Query 017747
Match_columns 366
No_of_seqs 145 out of 597
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 8E-100 2E-104 748.7 38.4 360 1-365 13-385 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 3.7E-92 8E-97 690.0 30.1 322 36-366 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.6 8.6E-14 1.9E-18 131.4 17.7 250 9-365 1-256 (258)
4 PRK14103 trans-aconitate 2-met 99.6 5.6E-14 1.2E-18 132.8 15.9 226 15-349 4-232 (255)
5 PRK10258 biotin biosynthesis p 99.5 2.5E-12 5.3E-17 121.1 16.5 192 15-322 17-208 (251)
6 TIGR02072 BioC biotin biosynth 99.4 6.1E-12 1.3E-16 116.0 12.4 216 14-344 5-221 (240)
7 PLN02233 ubiquinone biosynthes 99.1 5.7E-10 1.2E-14 106.2 13.2 170 50-291 73-246 (261)
8 COG4106 Tam Trans-aconitate me 99.1 1.3E-09 2.8E-14 99.5 13.0 219 50-365 30-255 (257)
9 TIGR00740 methyltransferase, p 99.1 2E-09 4.4E-14 100.6 14.0 163 50-287 53-221 (239)
10 TIGR02752 MenG_heptapren 2-hep 99.1 1.1E-09 2.3E-14 101.6 11.1 170 50-294 45-219 (231)
11 COG2226 UbiE Methylase involve 99.0 5E-10 1.1E-14 105.0 7.1 167 50-290 51-221 (238)
12 PTZ00098 phosphoethanolamine N 99.0 2E-08 4.3E-13 95.7 17.5 151 50-293 52-202 (263)
13 PLN02336 phosphoethanolamine N 98.9 2.9E-08 6.3E-13 102.0 16.2 193 50-348 266-460 (475)
14 PLN02244 tocopherol O-methyltr 98.9 1E-08 2.2E-13 101.3 12.3 160 50-292 118-277 (340)
15 PRK11036 putative S-adenosyl-L 98.9 1E-08 2.2E-13 97.0 11.1 165 49-295 43-209 (255)
16 PF01209 Ubie_methyltran: ubiE 98.9 7.2E-10 1.6E-14 103.9 2.7 164 50-291 47-218 (233)
17 PRK08317 hypothetical protein; 98.9 2.8E-07 6.1E-12 84.7 19.4 204 50-345 19-222 (241)
18 PRK15451 tRNA cmo(5)U34 methyl 98.9 4E-08 8.7E-13 92.6 13.7 165 49-287 55-224 (247)
19 PRK06202 hypothetical protein; 98.8 2.2E-07 4.7E-12 86.6 16.4 168 49-298 59-227 (232)
20 PRK15068 tRNA mo(5)U34 methylt 98.8 3.6E-08 7.8E-13 96.7 10.1 153 51-294 123-275 (322)
21 PLN02396 hexaprenyldihydroxybe 98.7 7.1E-08 1.5E-12 94.6 11.4 158 51-294 132-290 (322)
22 PF08241 Methyltransf_11: Meth 98.7 1.8E-08 3.8E-13 79.1 5.9 95 55-221 1-95 (95)
23 PF13489 Methyltransf_23: Meth 98.7 5E-08 1.1E-12 84.3 9.2 138 49-290 21-160 (161)
24 PRK11705 cyclopropane fatty ac 98.7 1.4E-06 3E-11 87.5 19.8 201 50-361 167-370 (383)
25 PRK00216 ubiE ubiquinone/menaq 98.7 1.7E-07 3.7E-12 86.4 12.3 169 51-297 52-229 (239)
26 PLN02490 MPBQ/MSBQ methyltrans 98.7 9.6E-08 2.1E-12 94.2 9.4 149 50-298 113-261 (340)
27 PRK11207 tellurite resistance 98.6 2.7E-07 5.8E-12 84.2 11.3 138 51-292 31-169 (197)
28 TIGR00452 methyltransferase, p 98.6 1.8E-07 4E-12 91.4 9.8 153 50-293 121-273 (314)
29 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 7.3E-07 1.6E-11 81.4 13.1 167 50-295 39-212 (223)
30 smart00828 PKS_MT Methyltransf 98.6 1.1E-06 2.5E-11 80.9 14.1 146 53-296 2-147 (224)
31 KOG2940 Predicted methyltransf 98.5 2.4E-07 5.3E-12 85.5 7.8 152 51-292 73-226 (325)
32 PRK11873 arsM arsenite S-adeno 98.5 4.8E-07 1E-11 86.2 9.9 153 50-292 77-229 (272)
33 PF08242 Methyltransf_12: Meth 98.4 1.5E-07 3.3E-12 75.6 3.5 99 55-219 1-99 (99)
34 PRK12335 tellurite resistance 98.4 1.1E-06 2.4E-11 84.7 9.4 137 51-292 121-258 (287)
35 TIGR00477 tehB tellurite resis 98.4 5.5E-07 1.2E-11 82.0 6.7 139 50-292 30-168 (195)
36 PRK00121 trmB tRNA (guanine-N( 98.4 7.6E-07 1.7E-11 81.5 7.4 139 24-223 14-156 (202)
37 PRK05785 hypothetical protein; 98.4 1.6E-06 3.4E-11 80.9 9.6 76 51-164 52-127 (226)
38 TIGR02716 C20_methyl_CrtF C-20 98.4 1.2E-05 2.5E-10 78.1 15.5 155 49-289 148-302 (306)
39 PRK06922 hypothetical protein; 98.3 9.3E-07 2E-11 93.1 7.5 116 50-222 418-536 (677)
40 TIGR02021 BchM-ChlM magnesium 98.3 4.2E-06 9.1E-11 77.1 11.0 30 265-295 179-208 (219)
41 PF13847 Methyltransf_31: Meth 98.3 1.7E-06 3.7E-11 75.1 7.6 107 50-225 3-112 (152)
42 TIGR02081 metW methionine bios 98.3 4.8E-06 1E-10 75.4 9.5 28 267-295 142-169 (194)
43 PF02353 CMAS: Mycolic acid cy 98.2 8.1E-05 1.7E-09 71.5 17.8 172 51-324 63-235 (273)
44 PLN02336 phosphoethanolamine N 98.2 6.2E-06 1.3E-10 84.8 10.8 101 51-222 38-141 (475)
45 PRK11088 rrmA 23S rRNA methylt 98.2 5.7E-06 1.2E-10 79.1 9.6 76 50-156 85-160 (272)
46 PF12847 Methyltransf_18: Meth 98.2 5.2E-06 1.1E-10 67.7 7.7 107 51-223 2-111 (112)
47 KOG1540 Ubiquinone biosynthesi 98.2 4.6E-06 9.9E-11 78.3 8.0 173 50-290 100-278 (296)
48 smart00138 MeTrc Methyltransfe 98.2 9.7E-06 2.1E-10 77.4 10.6 128 49-222 98-241 (264)
49 KOG3010 Methyltransferase [Gen 98.2 1.7E-05 3.6E-10 74.0 11.5 103 51-228 34-141 (261)
50 TIGR03438 probable methyltrans 98.2 7.6E-06 1.6E-10 79.5 9.8 115 50-228 63-182 (301)
51 TIGR01983 UbiG ubiquinone bios 98.2 2.7E-05 5.8E-10 71.6 12.1 159 50-294 45-204 (224)
52 KOG1541 Predicted protein carb 98.1 2.1E-05 4.6E-10 72.5 11.0 142 15-227 20-164 (270)
53 TIGR00138 gidB 16S rRNA methyl 98.1 4.2E-06 9E-11 75.5 5.8 130 51-267 43-173 (181)
54 PRK11188 rrmJ 23S rRNA methylt 98.1 1.7E-05 3.7E-10 73.1 9.3 111 50-227 51-169 (209)
55 PRK07580 Mg-protoporphyrin IX 98.1 0.00016 3.5E-09 66.6 15.7 31 265-296 187-217 (230)
56 PF03848 TehB: Tellurite resis 98.1 4.6E-06 1E-10 75.9 4.9 105 50-224 30-134 (192)
57 COG2230 Cfa Cyclopropane fatty 98.1 0.00031 6.7E-09 67.5 17.4 113 199-349 152-266 (283)
58 PF08003 Methyltransf_9: Prote 98.0 3E-05 6.4E-10 74.9 10.1 147 51-288 116-262 (315)
59 PF13649 Methyltransf_25: Meth 98.0 4.4E-06 9.6E-11 67.4 3.8 100 54-217 1-101 (101)
60 PRK05134 bifunctional 3-demeth 98.0 3.3E-05 7.2E-10 71.6 9.9 157 50-293 48-205 (233)
61 TIGR03587 Pse_Me-ase pseudamin 98.0 3.8E-05 8.3E-10 70.5 9.4 91 31-161 29-119 (204)
62 KOG2361 Predicted methyltransf 97.9 8.6E-05 1.9E-09 69.3 10.9 184 32-293 53-237 (264)
63 TIGR00537 hemK_rel_arch HemK-r 97.8 6.8E-05 1.5E-09 67.0 8.5 125 50-226 19-143 (179)
64 TIGR02469 CbiT precorrin-6Y C5 97.8 2E-05 4.2E-10 65.0 4.6 22 203-224 102-123 (124)
65 PRK09489 rsmC 16S ribosomal RN 97.8 5.3E-05 1.1E-09 75.1 7.4 107 51-223 197-303 (342)
66 PRK13944 protein-L-isoaspartat 97.8 3.1E-05 6.7E-10 71.0 5.3 82 51-160 73-155 (205)
67 TIGR00091 tRNA (guanine-N(7)-) 97.8 0.00021 4.6E-09 64.9 10.7 113 51-223 17-132 (194)
68 PLN02585 magnesium protoporphy 97.8 0.00078 1.7E-08 66.1 15.1 82 50-160 144-225 (315)
69 KOG1270 Methyltransferases [Co 97.7 0.00012 2.5E-09 69.3 8.4 77 200-292 172-248 (282)
70 PF05401 NodS: Nodulation prot 97.7 0.00029 6.2E-09 64.2 10.2 104 49-224 42-147 (201)
71 TIGR03840 TMPT_Se_Te thiopurin 97.7 0.00073 1.6E-08 62.6 13.1 152 50-295 34-189 (213)
72 TIGR00080 pimt protein-L-isoas 97.7 0.0001 2.2E-09 67.9 6.9 80 50-157 77-156 (215)
73 TIGR03534 RF_mod_PrmC protein- 97.7 0.00015 3.3E-09 67.6 8.0 130 50-223 87-217 (251)
74 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00012 2.6E-09 73.4 7.4 110 52-223 124-235 (390)
75 PRK15001 SAM-dependent 23S rib 97.6 0.00011 2.3E-09 73.8 6.7 111 52-223 230-340 (378)
76 PRK13942 protein-L-isoaspartat 97.6 0.0002 4.2E-09 66.1 7.9 81 50-158 76-156 (212)
77 PRK00312 pcm protein-L-isoaspa 97.6 0.00012 2.7E-09 67.1 6.5 80 50-160 78-157 (212)
78 PF05175 MTS: Methyltransferas 97.6 0.00013 2.7E-09 64.9 6.0 110 50-223 31-140 (170)
79 PRK14967 putative methyltransf 97.6 0.00046 9.9E-09 64.0 9.6 168 51-284 37-204 (223)
80 PRK08287 cobalt-precorrin-6Y C 97.5 0.00015 3.3E-09 65.1 6.0 35 50-100 31-65 (187)
81 PRK00107 gidB 16S rRNA methylt 97.5 0.00035 7.5E-09 63.5 7.9 101 50-223 45-145 (187)
82 PF00891 Methyltransf_2: O-met 97.5 0.0012 2.6E-08 61.7 11.6 104 49-228 99-204 (241)
83 PLN02232 ubiquinone biosynthes 97.5 0.00023 4.9E-09 62.8 5.7 108 136-290 33-144 (160)
84 TIGR00438 rrmJ cell division p 97.4 0.00059 1.3E-08 61.4 8.3 25 200-224 123-147 (188)
85 PF06080 DUF938: Protein of un 97.4 0.0017 3.6E-08 59.7 11.0 157 53-288 28-187 (204)
86 PRK13255 thiopurine S-methyltr 97.4 0.0043 9.3E-08 57.7 13.4 151 50-295 37-192 (218)
87 TIGR03533 L3_gln_methyl protei 97.3 0.00082 1.8E-08 64.9 8.6 128 51-224 122-252 (284)
88 PF03141 Methyltransf_29: Puta 97.3 0.00053 1.1E-08 70.2 7.4 48 140-226 173-222 (506)
89 PF07021 MetW: Methionine bios 97.3 0.001 2.3E-08 60.4 8.5 151 51-298 14-172 (193)
90 cd02440 AdoMet_MTases S-adenos 97.3 0.00097 2.1E-08 51.4 7.4 102 53-222 1-103 (107)
91 PTZ00146 fibrillarin; Provisio 97.3 0.0026 5.7E-08 61.6 11.8 61 18-100 107-167 (293)
92 PF05148 Methyltransf_8: Hypot 97.3 0.00056 1.2E-08 62.9 6.3 87 49-222 71-157 (219)
93 PRK04266 fibrillarin; Provisio 97.3 0.0015 3.3E-08 61.0 9.2 35 51-101 73-107 (226)
94 COG4123 Predicted O-methyltran 97.2 0.00065 1.4E-08 64.2 6.3 125 49-223 43-170 (248)
95 KOG3045 Predicted RNA methylas 97.2 0.0019 4.1E-08 61.1 8.5 88 48-224 178-265 (325)
96 COG2227 UbiG 2-polyprenyl-3-me 97.1 0.00059 1.3E-08 63.9 5.0 152 51-293 60-215 (243)
97 PRK14903 16S rRNA methyltransf 97.1 0.0015 3.2E-08 66.8 7.9 129 51-228 238-371 (431)
98 PRK11805 N5-glutamine S-adenos 97.1 0.0019 4.1E-08 63.1 8.2 73 52-154 135-208 (307)
99 PRK14904 16S rRNA methyltransf 97.0 0.0031 6.6E-08 64.7 9.5 126 51-227 251-381 (445)
100 TIGR00563 rsmB ribosomal RNA s 97.0 0.0037 8.1E-08 63.7 9.9 129 51-227 239-372 (426)
101 PRK10901 16S rRNA methyltransf 97.0 0.0028 6.1E-08 64.6 8.9 126 51-226 245-375 (427)
102 PRK00811 spermidine synthase; 96.9 0.0027 5.9E-08 61.2 7.2 116 49-223 75-191 (283)
103 PHA03411 putative methyltransf 96.8 0.0034 7.5E-08 60.3 7.4 116 51-226 65-186 (279)
104 TIGR00536 hemK_fam HemK family 96.8 0.0049 1.1E-07 59.4 8.6 130 52-224 116-245 (284)
105 PRK14902 16S rRNA methyltransf 96.8 0.0058 1.3E-07 62.6 9.5 127 51-226 251-382 (444)
106 KOG3178 Hydroxyindole-O-methyl 96.8 0.024 5.2E-07 55.9 13.1 186 9-289 138-326 (342)
107 TIGR00406 prmA ribosomal prote 96.8 0.0015 3.2E-08 63.2 4.6 34 51-101 160-193 (288)
108 PRK14968 putative methyltransf 96.7 0.0057 1.2E-07 54.2 7.6 124 51-223 24-148 (188)
109 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0036 7.7E-08 61.8 6.7 118 50-225 62-188 (331)
110 PRK14966 unknown domain/N5-glu 96.7 0.0064 1.4E-07 61.7 8.6 74 51-154 252-326 (423)
111 PRK09328 N5-glutamine S-adenos 96.7 0.0048 1E-07 58.5 7.4 24 200-223 215-238 (275)
112 KOG1331 Predicted methyltransf 96.7 0.0039 8.4E-08 59.7 6.3 133 17-230 17-150 (293)
113 PRK00377 cbiT cobalt-precorrin 96.6 0.0019 4.2E-08 58.6 4.1 36 50-100 40-75 (198)
114 PLN03075 nicotianamine synthas 96.6 0.014 3E-07 56.7 10.1 110 50-223 123-233 (296)
115 PF13659 Methyltransf_26: Meth 96.6 0.0063 1.4E-07 49.7 6.7 113 52-224 2-116 (117)
116 PRK01544 bifunctional N5-gluta 96.6 0.0044 9.6E-08 64.6 6.9 130 51-223 139-269 (506)
117 PF02390 Methyltransf_4: Putat 96.5 0.0044 9.6E-08 56.6 5.5 113 53-223 20-133 (195)
118 TIGR01177 conserved hypothetic 96.5 0.013 2.7E-07 57.7 9.0 115 51-226 183-297 (329)
119 PRK14901 16S rRNA methyltransf 96.5 0.014 3.1E-07 59.6 9.5 29 198-226 359-387 (434)
120 COG2242 CobL Precorrin-6B meth 96.4 0.031 6.7E-07 50.6 10.3 50 34-99 16-67 (187)
121 PRK00517 prmA ribosomal protei 96.4 0.0036 7.8E-08 59.1 4.4 17 50-66 119-135 (250)
122 KOG4300 Predicted methyltransf 96.4 0.0054 1.2E-07 56.4 5.2 154 51-295 77-234 (252)
123 TIGR00446 nop2p NOL1/NOP2/sun 96.4 0.014 3.1E-07 55.6 8.4 30 197-226 173-202 (264)
124 COG2813 RsmC 16S RNA G1207 met 96.4 0.019 4.2E-07 55.6 9.1 106 52-224 160-267 (300)
125 TIGR00417 speE spermidine synt 96.3 0.012 2.5E-07 56.4 7.0 114 49-222 71-185 (270)
126 PF05891 Methyltransf_PK: AdoM 96.2 0.0045 9.7E-08 57.3 3.8 93 127-292 106-200 (218)
127 COG2264 PrmA Ribosomal protein 96.2 0.004 8.7E-08 60.4 3.6 33 50-99 162-194 (300)
128 PRK04457 spermidine synthase; 96.2 0.015 3.3E-07 55.5 7.5 24 204-227 158-181 (262)
129 PRK13943 protein-L-isoaspartat 96.1 0.0075 1.6E-07 59.4 5.1 19 50-68 80-98 (322)
130 PLN02366 spermidine synthase 96.0 0.022 4.7E-07 55.8 7.8 116 49-223 90-206 (308)
131 TIGR03704 PrmC_rel_meth putati 95.9 0.058 1.2E-06 51.1 9.9 22 202-223 195-216 (251)
132 PF01135 PCMT: Protein-L-isoas 95.9 0.018 3.8E-07 53.3 6.0 17 51-67 73-89 (209)
133 KOG1975 mRNA cap methyltransfe 95.9 0.038 8.2E-07 54.0 8.4 118 51-226 118-240 (389)
134 COG2518 Pcm Protein-L-isoaspar 95.8 0.025 5.3E-07 52.2 6.6 18 50-67 72-89 (209)
135 PRK07402 precorrin-6B methylas 95.7 0.031 6.7E-07 50.6 6.9 23 202-224 121-143 (196)
136 COG4976 Predicted methyltransf 95.7 0.014 3E-07 54.6 4.6 63 205-297 207-269 (287)
137 PRK01544 bifunctional N5-gluta 95.6 0.057 1.2E-06 56.4 9.1 140 23-223 323-462 (506)
138 PF06325 PrmA: Ribosomal prote 95.4 0.02 4.3E-07 55.7 4.8 17 51-67 162-178 (295)
139 PRK03612 spermidine synthase; 95.4 0.056 1.2E-06 56.7 8.3 117 49-223 296-415 (521)
140 PF12147 Methyltransf_20: Puta 95.3 0.44 9.5E-06 46.2 13.2 52 32-99 119-170 (311)
141 smart00650 rADc Ribosomal RNA 95.2 0.014 3.1E-07 51.5 2.9 75 51-158 14-88 (169)
142 COG2890 HemK Methylase of poly 95.1 0.11 2.3E-06 50.2 8.9 125 53-223 113-238 (280)
143 PRK01581 speE spermidine synth 94.8 0.1 2.2E-06 52.2 7.9 119 48-222 148-267 (374)
144 PF01728 FtsJ: FtsJ-like methy 94.3 0.22 4.8E-06 44.2 8.2 37 50-101 23-59 (181)
145 TIGR03439 methyl_EasF probable 94.2 0.35 7.5E-06 47.6 10.0 69 49-140 75-143 (319)
146 PRK13256 thiopurine S-methyltr 93.7 0.31 6.7E-06 45.6 8.1 117 50-225 43-165 (226)
147 PF05724 TPMT: Thiopurine S-me 93.6 1.1 2.4E-05 41.6 11.7 165 33-295 23-192 (218)
148 PLN02672 methionine S-methyltr 93.4 0.16 3.5E-06 57.4 6.7 41 51-107 119-159 (1082)
149 PRK13168 rumA 23S rRNA m(5)U19 93.4 0.15 3.2E-06 52.4 5.9 34 51-102 298-331 (443)
150 KOG3191 Predicted N6-DNA-methy 93.1 0.8 1.7E-05 41.6 9.4 145 31-228 27-173 (209)
151 KOG1499 Protein arginine N-met 93.1 0.4 8.6E-06 47.4 8.1 105 50-220 60-164 (346)
152 COG0220 Predicted S-adenosylme 93.0 0.31 6.7E-06 45.7 7.0 114 52-223 50-164 (227)
153 PF11968 DUF3321: Putative met 92.8 0.49 1.1E-05 43.9 7.9 95 50-227 51-153 (219)
154 PLN02781 Probable caffeoyl-CoA 92.6 0.61 1.3E-05 43.7 8.4 36 50-100 68-103 (234)
155 KOG1500 Protein arginine N-met 92.5 0.46 1E-05 46.9 7.5 69 199-270 259-342 (517)
156 PRK00274 ksgA 16S ribosomal RN 92.4 0.052 1.1E-06 52.0 0.9 53 6-68 8-60 (272)
157 PRK10611 chemotaxis methyltran 92.2 0.44 9.6E-06 46.2 7.0 49 50-108 115-165 (287)
158 COG1352 CheR Methylase of chem 92.0 1.7 3.7E-05 41.8 10.7 44 50-100 96-139 (268)
159 PF10294 Methyltransf_16: Puta 91.8 0.4 8.7E-06 42.7 5.9 36 49-100 44-79 (173)
160 PF13679 Methyltransf_32: Meth 91.5 0.45 9.7E-06 40.8 5.7 57 30-100 7-63 (141)
161 KOG2899 Predicted methyltransf 91.5 1.1 2.3E-05 42.5 8.4 23 200-222 186-208 (288)
162 KOG2904 Predicted methyltransf 91.4 1.7 3.6E-05 42.0 9.8 131 51-228 149-290 (328)
163 PHA03412 putative methyltransf 91.3 0.17 3.6E-06 47.8 3.0 72 51-154 50-121 (241)
164 PF01739 CheR: CheR methyltran 91.3 1 2.2E-05 41.2 8.1 43 143-222 132-174 (196)
165 PRK14896 ksgA 16S ribosomal RN 91.1 0.28 6E-06 46.6 4.4 18 50-67 29-46 (258)
166 PRK11783 rlmL 23S rRNA m(2)G24 90.5 0.4 8.7E-06 52.1 5.4 116 51-223 539-656 (702)
167 PRK15128 23S rRNA m(5)C1962 me 88.8 2.8 6.1E-05 42.5 9.7 27 197-223 313-339 (396)
168 PRK11933 yebU rRNA (cytosine-C 88.8 1.7 3.7E-05 45.1 8.2 132 50-226 113-245 (470)
169 PF05219 DREV: DREV methyltran 86.9 1.9 4.2E-05 41.2 6.7 18 50-67 94-111 (265)
170 PLN02823 spermine synthase 86.7 2.7 5.9E-05 41.7 8.0 18 49-66 102-119 (336)
171 TIGR00755 ksgA dimethyladenosi 86.5 0.69 1.5E-05 43.6 3.5 18 50-67 29-46 (253)
172 PRK11727 23S rRNA mA1618 methy 86.2 1.7 3.7E-05 42.8 6.2 80 50-154 114-196 (321)
173 TIGR00478 tly hemolysin TlyA f 85.6 0.71 1.5E-05 43.3 3.1 37 50-103 75-111 (228)
174 COG2519 GCD14 tRNA(1-methylade 85.4 6 0.00013 37.7 9.1 128 51-265 95-223 (256)
175 PF09243 Rsm22: Mitochondrial 85.3 3.4 7.4E-05 39.6 7.7 17 50-66 33-49 (274)
176 PRK03522 rumB 23S rRNA methylu 84.9 1.3 2.8E-05 43.2 4.7 33 51-101 174-206 (315)
177 PF07942 N2227: N2227-like pro 84.7 11 0.00024 36.3 10.7 69 199-297 178-247 (270)
178 COG2263 Predicted RNA methylas 84.0 0.62 1.4E-05 42.4 1.8 17 51-67 46-62 (198)
179 PTZ00338 dimethyladenosine tra 82.3 1.6 3.5E-05 42.4 4.1 21 50-70 36-56 (294)
180 PF01234 NNMT_PNMT_TEMT: NNMT/ 81.6 2 4.4E-05 41.0 4.4 82 146-292 157-238 (256)
181 PF05185 PRMT5: PRMT5 arginine 79.2 1.3 2.9E-05 45.6 2.5 79 51-154 187-265 (448)
182 COG0500 SmtA SAM-dependent met 79.1 6 0.00013 31.1 5.9 24 206-229 138-161 (257)
183 PRK10909 rsmD 16S rRNA m(2)G96 77.5 2.8 6E-05 38.4 3.8 17 51-67 54-70 (199)
184 PRK04148 hypothetical protein; 76.7 7.2 0.00016 33.6 5.9 15 50-64 16-30 (134)
185 PLN02589 caffeoyl-CoA O-methyl 73.7 8.8 0.00019 36.4 6.2 36 50-100 79-114 (247)
186 KOG2798 Putative trehalase [Ca 73.1 43 0.00092 33.2 10.7 69 200-297 273-341 (369)
187 COG2521 Predicted archaeal met 72.6 4.6 0.0001 38.2 3.9 56 133-224 189-246 (287)
188 PF02384 N6_Mtase: N-6 DNA Met 72.3 7.8 0.00017 37.4 5.7 41 50-99 46-86 (311)
189 PF03514 GRAS: GRAS domain fam 71.0 71 0.0015 32.1 12.3 44 49-101 109-152 (374)
190 TIGR02085 meth_trns_rumB 23S r 70.5 5.8 0.00013 39.8 4.4 17 52-68 235-251 (374)
191 TIGR00095 RNA methyltransferas 69.4 5.8 0.00013 35.8 3.8 17 51-67 50-66 (189)
192 KOG1269 SAM-dependent methyltr 69.3 13 0.00028 37.3 6.6 54 134-226 165-218 (364)
193 COG0030 KsgA Dimethyladenosine 66.8 18 0.00039 34.6 6.7 52 51-107 31-94 (259)
194 KOG3420 Predicted RNA methylas 66.4 4 8.6E-05 35.9 2.0 17 50-66 48-64 (185)
195 TIGR00479 rumA 23S rRNA (uraci 65.7 7.3 0.00016 39.7 4.1 17 51-67 293-309 (431)
196 KOG1271 Methyltransferases [Ge 65.5 8.6 0.00019 35.2 3.9 15 52-66 69-83 (227)
197 PF08704 GCD14: tRNA methyltra 65.0 20 0.00042 34.1 6.6 22 51-72 41-62 (247)
198 COG5459 Predicted rRNA methyla 64.1 87 0.0019 31.7 10.8 66 205-282 207-272 (484)
199 COG4122 Predicted O-methyltran 63.6 27 0.00059 32.5 7.1 37 49-100 58-94 (219)
200 PRK11760 putative 23S rRNA C24 62.3 8 0.00017 38.6 3.5 33 35-67 191-228 (357)
201 COG1189 Predicted rRNA methyla 61.2 8.2 0.00018 36.5 3.2 38 48-102 77-114 (245)
202 PRK04338 N(2),N(2)-dimethylgua 60.4 12 0.00026 37.7 4.5 63 13-100 29-91 (382)
203 PRK05031 tRNA (uracil-5-)-meth 59.8 13 0.00028 37.2 4.5 16 52-67 208-223 (362)
204 TIGR02143 trmA_only tRNA (urac 56.5 15 0.00032 36.6 4.3 16 52-67 199-214 (353)
205 PF07757 AdoMet_MTase: Predict 55.3 6.8 0.00015 32.6 1.4 17 50-66 58-74 (112)
206 KOG4589 Cell division protein 55.1 21 0.00045 32.8 4.5 19 50-68 69-87 (232)
207 PF06859 Bin3: Bicoid-interact 54.9 11 0.00024 31.3 2.6 25 199-223 20-44 (110)
208 TIGR01444 fkbM_fam methyltrans 53.6 7.8 0.00017 32.5 1.6 15 53-67 1-15 (143)
209 PRK00050 16S rRNA m(4)C1402 me 52.2 19 0.00042 35.1 4.2 34 51-99 20-53 (296)
210 PRK00536 speE spermidine synth 51.0 1E+02 0.0022 29.6 8.8 50 48-115 70-119 (262)
211 KOG3115 Methyltransferase-like 50.6 4.3 9.4E-05 37.6 -0.5 17 51-67 61-77 (249)
212 PF00398 RrnaAD: Ribosomal RNA 49.0 38 0.00083 32.0 5.7 20 50-69 30-49 (262)
213 PRK01747 mnmC bifunctional tRN 48.9 49 0.0011 35.7 7.1 24 49-72 56-79 (662)
214 cd08788 CARD_NOD2_2_CARD15 Cas 46.1 22 0.00048 27.8 2.8 41 239-280 12-52 (81)
215 PF09445 Methyltransf_15: RNA 44.9 13 0.00029 33.0 1.7 16 53-68 2-17 (163)
216 COG0144 Sun tRNA and rRNA cyto 43.1 2.2E+02 0.0047 28.4 10.2 135 51-228 157-293 (355)
217 PF01564 Spermine_synth: Sperm 43.0 1.5E+02 0.0034 27.8 8.7 20 204-223 172-191 (246)
218 PRK00050 16S rRNA m(4)C1402 me 42.6 58 0.0013 31.8 5.9 33 194-226 207-239 (296)
219 TIGR02987 met_A_Alw26 type II 42.2 32 0.00068 36.0 4.3 43 50-100 31-73 (524)
220 PF01596 Methyltransf_3: O-met 41.9 19 0.00041 33.1 2.3 19 50-68 45-63 (205)
221 PF03962 Mnd1: Mnd1 family; I 41.2 19 0.0004 32.7 2.1 34 242-275 31-64 (188)
222 PRK11524 putative methyltransf 40.3 55 0.0012 31.3 5.3 22 202-223 59-80 (284)
223 PF07091 FmrO: Ribosomal RNA m 38.8 16 0.00035 34.8 1.3 50 34-100 90-139 (251)
224 PF02636 Methyltransf_28: Puta 36.4 54 0.0012 30.7 4.5 25 50-78 18-42 (252)
225 PF08123 DOT1: Histone methyla 35.5 32 0.0007 31.6 2.7 24 198-221 133-156 (205)
226 KOG1501 Arginine N-methyltrans 35.3 29 0.00062 35.9 2.5 22 49-70 65-86 (636)
227 COG5124 Protein predicted to b 34.6 31 0.00067 31.1 2.3 35 239-273 41-75 (209)
228 COG0293 FtsJ 23S rRNA methylas 32.9 97 0.0021 28.6 5.4 19 49-67 44-62 (205)
229 PLN02476 O-methyltransferase 31.4 53 0.0012 31.7 3.6 19 50-68 118-136 (278)
230 TIGR00308 TRM1 tRNA(guanine-26 30.8 54 0.0012 33.0 3.7 66 14-100 14-79 (374)
231 PF09597 IGR: IGR protein moti 30.3 51 0.0011 24.1 2.5 28 191-218 12-39 (57)
232 PF09851 SHOCT: Short C-termin 29.8 41 0.0009 21.2 1.7 19 245-263 6-24 (31)
233 PF02268 TFIIA_gamma_N: Transc 28.9 54 0.0012 23.2 2.3 20 241-260 13-32 (49)
234 KOG0820 Ribosomal RNA adenine 28.3 1.7E+02 0.0037 28.6 6.3 52 49-102 57-120 (315)
235 PHA03297 envelope glycoprotein 28.3 5.2 0.00011 34.9 -3.4 65 48-113 37-107 (185)
236 PF03641 Lysine_decarbox: Poss 28.0 83 0.0018 26.6 3.9 39 239-280 95-133 (133)
237 PF02375 JmjN: jmjN domain; I 27.9 25 0.00055 22.9 0.5 15 267-281 1-15 (34)
238 COG4076 Predicted RNA methylas 27.5 1.3E+02 0.0028 27.8 5.1 18 52-69 34-51 (252)
239 TIGR00730 conserved hypothetic 27.1 94 0.002 27.9 4.2 41 239-282 137-177 (178)
240 KOG4058 Uncharacterized conser 26.6 64 0.0014 28.6 2.9 60 7-66 24-88 (199)
241 KOG2920 Predicted methyltransf 26.1 34 0.00073 33.2 1.2 32 31-66 100-132 (282)
242 COG4627 Uncharacterized protei 26.0 66 0.0014 28.7 2.9 27 201-227 64-90 (185)
243 PF04816 DUF633: Family of unk 25.8 39 0.00084 31.1 1.5 23 271-294 103-125 (205)
244 KOG0451 Predicted 2-oxoglutara 25.7 1.6E+02 0.0034 31.5 5.9 72 180-264 390-475 (913)
245 PF14904 FAM86: Family of unkn 24.8 73 0.0016 26.1 2.7 33 312-344 67-99 (100)
246 smart00400 ZnF_CHCC zinc finge 24.2 66 0.0014 22.8 2.2 21 52-72 22-42 (55)
247 PF04672 Methyltransf_19: S-ad 24.0 2.3E+02 0.005 27.3 6.4 55 26-97 46-102 (267)
248 PRK13699 putative methylase; P 23.7 91 0.002 29.0 3.6 20 203-222 52-71 (227)
249 KOG1122 tRNA and rRNA cytosine 23.7 6.1E+02 0.013 26.3 9.5 42 51-107 242-283 (460)
250 PRK11783 rlmL 23S rRNA m(2)G24 22.9 5.3E+02 0.012 28.2 9.8 18 51-68 191-208 (702)
251 PF03141 Methyltransf_29: Puta 22.5 2E+02 0.0044 30.2 6.1 52 10-67 331-382 (506)
252 PF01189 Nol1_Nop2_Fmu: NOL1/N 21.8 82 0.0018 30.3 3.0 41 51-106 86-126 (283)
253 KOG4068 Uncharacterized conser 21.8 1.1E+02 0.0024 27.2 3.4 45 240-284 68-116 (174)
254 PF02475 Met_10: Met-10+ like- 21.7 69 0.0015 29.3 2.3 41 50-106 101-141 (200)
255 PF10357 Kin17_mid: Domain of 21.3 1.1E+02 0.0023 26.2 3.2 26 187-212 10-35 (127)
256 COG0031 CysK Cysteine synthase 21.2 2.7E+02 0.0059 27.3 6.4 119 52-227 170-294 (300)
257 PF12242 Eno-Rase_NADH_b: NAD( 20.9 1.2E+02 0.0025 23.8 3.0 17 49-65 37-53 (78)
258 PRK10953 cysJ sulfite reductas 20.8 7.2E+02 0.016 26.7 10.1 114 202-342 468-590 (600)
259 KOG3790 Uncharacterized conser 20.5 71 0.0015 32.9 2.3 14 49-62 210-223 (529)
260 COG0357 GidB Predicted S-adeno 20.3 1.2E+02 0.0027 28.1 3.7 31 51-97 68-98 (215)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=8.2e-100 Score=748.73 Aligned_cols=360 Identities=34% Similarity=0.571 Sum_probs=327.1
Q ss_pred CCccceeccCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCC-CceEEEeecCCCCcchHHHHHHHHHHHHHH
Q 017747 1 MDVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDP-KTINIADLGCSSGPNTLAIIKDFVQTVEMT 79 (366)
Q Consensus 1 ~~~~~~l~M~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~-~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~ 79 (366)
|+++++|||+||+|++||++||.+|+.++..++|+|+++|++++....+ ++++|||||||+|+||+.+|+.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988654334 689999999999999999999999999999
Q ss_pred hhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHH--hhhc--CCCCCCceEEeccCCCcccccCCCCcccEEEccc
Q 017747 80 SREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQL--RNER--GGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSN 155 (366)
Q Consensus 80 ~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~--~~~~--~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~ 155 (366)
|.+. +.++|++||||||||+||||+||++|+.+.+.+ ..+. ..+ .++||++|||||||+||||++|+||+||++
T Consensus 93 ~~~~-~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~-~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~ 170 (386)
T PLN02668 93 YESA-GLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASG-HRSYFAAGVPGSFYRRLFPARSIDVFHSAF 170 (386)
T ss_pred hhhc-CCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccC-CCceEEEecCccccccccCCCceEEEEeec
Confidence 9874 556789999999999999999999999765532 1110 011 246999999999999999999999999999
Q ss_pred ccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCC
Q 017747 156 SLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRG 235 (366)
Q Consensus 156 alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~ 235 (366)
||||||++|+.+.++.++.||||+||++.++ +.|.+||++||++||++||++|++||+|||+||++++||++.+++.++
T Consensus 171 slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~ 249 (386)
T PLN02668 171 SLHWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQG 249 (386)
T ss_pred cceecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCC
Confidence 9999999999999999999999999999888 779999999999999999999999999999999999999987777665
Q ss_pred -chhHHHH-HHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEEEEeeccCCCC----cccchhh
Q 017747 236 -NSFFWEL-LSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQVERQGHD----RGESYGS 309 (366)
Q Consensus 236 -~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~----d~~~~~~ 309 (366)
.+.+|+. +.++|++||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|.++..|++.. |....+.
T Consensus 250 ~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~ 329 (386)
T PLN02668 250 GAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGR 329 (386)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHH
Confidence 5667877 999999999999999999999999999999999999999999999999999998886533 3345678
Q ss_pred hHhhhHHHhhhhHHHhhcCCCcchHHHHHHHHHHHHHHHHHh--cCCCcEEEEEEEee
Q 017747 310 AVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGRLVDEEMAK--EEIKPLTFVLLLRK 365 (366)
Q Consensus 310 ~~~~~~Ra~~e~~l~~~~g~~~~i~d~lf~r~~~~~~~~~~~--~~~~~~~~~~~l~k 365 (366)
.+++++||++||+|.+||| ++++|+||+||+++++++++. ++..+.+++++|+-
T Consensus 330 ~~a~~~RA~~E~ll~~HFG--~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 330 AMANSCRSVAGVLVDAHIG--EELSNELFLRVERRATSHAKELLEKLQFFHIVASLSF 385 (386)
T ss_pred HHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEec
Confidence 8999999999999999999 999999999999999999998 88999999999973
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3.7e-92 Score=689.97 Aligned_cols=322 Identities=44% Similarity=0.813 Sum_probs=276.6
Q ss_pred HHHHHHHhhh-hcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhc-CCCCcceEEecCCCCCchhHHHhhCchh
Q 017747 36 TLEALQQLYL-EIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQ-NPAPEFHFYLNDLPTNDFNSVFKALPDF 113 (366)
Q Consensus 36 l~~ai~~l~~-~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~-~~~p~~~v~~nDLp~NDFn~lf~~l~~~ 113 (366)
||+||.+++. ...+++++|||||||+|+||+.+|+.||++|+++|... + .++|++||||||||+||||+||++|+.+
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~-~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~ 79 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSS-NNQPPPEFQVFFNDLPSNDFNTLFKSLPSF 79 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCT-T-SS--EEEEEEEE-TTS-HHHHHHCHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhh-cCCCCCeEEEEeCCCCCccHHHHHHhChhh
Confidence 5889998876 34778999999999999999999999999999998765 3 5788999999999999999999999998
Q ss_pred HHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHH
Q 017747 114 HRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKA 193 (366)
Q Consensus 114 ~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~a 193 (366)
.+++.. .++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++.+++++|.+|
T Consensus 80 ~~~~~~------~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~a 153 (334)
T PF03492_consen 80 QQSLKK------FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKA 153 (334)
T ss_dssp HHHHHH------TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHH
T ss_pred hhccCC------CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHH
Confidence 887765 56999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCH
Q 017747 194 YFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSK 273 (366)
Q Consensus 194 y~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~ 273 (366)
|++||++||++||++||+||+|||+|||+++||++.++...+.+.+|++++++|++||.||+|++|++|+||+|+|+||+
T Consensus 154 y~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~ 233 (334)
T PF03492_consen 154 YAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSP 233 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---H
T ss_pred HHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCH
Confidence 99999999999999999999999999999999999877777667899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCceEEeeEEEEeeccCCC-------CcccchhhhHhhhHHHhhhhHHHhhcCCCcchHHHHHHHHHHHHH
Q 017747 274 EEIEGEVGREGSFKLDQLDMFQVERQGH-------DRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGRLVD 346 (366)
Q Consensus 274 eEv~~~i~~~gsf~i~~~e~~~~~~~~~-------~d~~~~~~~~~~~~Ra~~e~~l~~~~g~~~~i~d~lf~r~~~~~~ 346 (366)
+||+++|+++|+|+|+++|.++.+|... +|...+|+.+++++|||+||+|++||| ++++|+||+||+++++
T Consensus 234 eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG--~ei~D~LF~r~~~~v~ 311 (334)
T PF03492_consen 234 EEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFG--EEIMDELFERYAKKVA 311 (334)
T ss_dssp HHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654332 123579999999999999999999999 9999999999999999
Q ss_pred HHHHhcC---CCcEEEEEEEeeC
Q 017747 347 EEMAKEE---IKPLTFVLLLRKL 366 (366)
Q Consensus 347 ~~~~~~~---~~~~~~~~~l~k~ 366 (366)
++++.++ +++++++++|+||
T Consensus 312 ~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 312 EHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHhhccCCCcEEEEEEEeeC
Confidence 9998776 8899999999997
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=8.6e-14 Score=131.39 Aligned_cols=250 Identities=13% Similarity=0.161 Sum_probs=151.3
Q ss_pred cCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCC
Q 017747 9 MAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPA 88 (366)
Q Consensus 9 M~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~ 88 (366)
|..++ +..|++++..|.+....++..+. .....+|+|+|||+|..+..+ .++ .
T Consensus 1 ~~~w~-~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~l--------a~~--------~ 53 (258)
T PRK01683 1 MSDWN-PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELL--------VER--------W 53 (258)
T ss_pred CCCCC-HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHH--------HHH--------C
Confidence 55555 45899999998877665543321 134589999999999998642 222 2
Q ss_pred CcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCccc
Q 017747 89 PEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLY 168 (366)
Q Consensus 89 p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~ 168 (366)
|..+|+..|+........-+.++ ..-|.. +++ ..+.|++++|+++|+.++||+.+.
T Consensus 54 ~~~~v~gvD~s~~~i~~a~~~~~---------------~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d~----- 109 (258)
T PRK01683 54 PAARITGIDSSPAMLAEARSRLP---------------DCQFVE---ADI-ASWQPPQALDLIFANASLQWLPDH----- 109 (258)
T ss_pred CCCEEEEEECCHHHHHHHHHhCC---------------CCeEEE---Cch-hccCCCCCccEEEEccChhhCCCH-----
Confidence 34789999987543322221111 112333 344 345677899999999999997541
Q ss_pred ccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHH
Q 017747 169 NEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLA 248 (366)
Q Consensus 169 ~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~ 248 (366)
..+|+.-.+.|+|||.+++++.+.... ..+ ..++
T Consensus 110 ----------------------------------~~~l~~~~~~LkpgG~~~~~~~~~~~~--------~~~----~~~~ 143 (258)
T PRK01683 110 ----------------------------------LELFPRLVSLLAPGGVLAVQMPDNLDE--------PSH----VLMR 143 (258)
T ss_pred ----------------------------------HHHHHHHHHhcCCCcEEEEECCCCCCC--------HHH----HHHH
Confidence 123556688999999999986432211 111 1222
Q ss_pred HHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHhh-hhHHHhhc
Q 017747 249 ILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQ-ESTIIHHF 327 (366)
Q Consensus 249 ~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~-e~~l~~~~ 327 (366)
++.........-...-..+.++++++++...+.+.| +.+...+... . .+.. ..+.+..|+++.. .+++ .++
T Consensus 144 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~~-~~l 215 (258)
T PRK01683 144 EVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-Y-HPMP----SAQAIVEWVKGTGLRPFL-DPL 215 (258)
T ss_pred HHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-e-eecC----CchhhhhhhhhccHHHHH-hhC
Confidence 222111111111111123457789999999999998 6554433321 1 1221 1356777888754 6666 678
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH-hc-C---CCcEEEEEEEee
Q 017747 328 GIGEGVLDNLFEIYGRLVDEEMA-KE-E---IKPLTFVLLLRK 365 (366)
Q Consensus 328 g~~~~i~d~lf~r~~~~~~~~~~-~~-~---~~~~~~~~~l~k 365 (366)
+ ++..+++.++|.+.+.+... .. + ..|.-+++..+|
T Consensus 216 ~--~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 216 T--ESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred C--HHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEe
Confidence 8 88999999999999988753 22 2 555556666655
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=5.6e-14 Score=132.78 Aligned_cols=226 Identities=14% Similarity=0.140 Sum_probs=141.3
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEE
Q 017747 15 PTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFY 94 (366)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~ 94 (366)
...|.+++..|.+.+..++..+.. ....+|+|+|||+|..+.. +.++ .|..+|+
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~~----------~~~~~vLDlGcG~G~~~~~--------l~~~--------~p~~~v~ 57 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVGA----------ERARRVVDLGCGPGNLTRY--------LARR--------WPGAVIE 57 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCCC----------CCCCEEEEEcCCCCHHHHH--------HHHH--------CCCCEEE
Confidence 458999999998777655443321 3468999999999988763 3232 2347899
Q ss_pred ecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCC
Q 017747 95 LNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGES 174 (366)
Q Consensus 95 ~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~ 174 (366)
..|+..+..... .. .+--|.. +++ +.+.|++++|+++|+.++||+.+.+
T Consensus 58 gvD~s~~~~~~a-----------~~------~~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d~~---------- 106 (255)
T PRK14103 58 ALDSSPEMVAAA-----------RE------RGVDART---GDV-RDWKPKPDTDVVVSNAALQWVPEHA---------- 106 (255)
T ss_pred EEECCHHHHHHH-----------Hh------cCCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCCHH----------
Confidence 999865322111 01 0111333 455 4566788999999999999975421
Q ss_pred CccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHH--HHHHHHHH
Q 017747 175 INKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLS--RSLAILVS 252 (366)
Q Consensus 175 ~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~--~al~~mv~ 252 (366)
.+|+.-.+.|+|||++++++.+.... + ...+...+. ..|.....
T Consensus 107 -----------------------------~~l~~~~~~LkpgG~l~~~~~~~~~~-~----~~~~~~~~~~~~~w~~~~~ 152 (255)
T PRK14103 107 -----------------------------DLLVRWVDELAPGSWIAVQVPGNFDA-P----SHAAVRALARREPWAKLLR 152 (255)
T ss_pred -----------------------------HHHHHHHHhCCCCcEEEEEcCCCcCC-h----hHHHHHHHhccCchhHHhc
Confidence 12344578899999999987653211 0 000111111 12322210
Q ss_pred cCccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHh-hhhHHHhhcCCCc
Q 017747 253 QGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAI-QESTIIHHFGIGE 331 (366)
Q Consensus 253 eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~-~e~~l~~~~g~~~ 331 (366)
-..+..+..+.+++++.+.+++.| |++...+..... +.. ..+.+..|+++. +.+++ +.++ +
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~-~~l~--~ 214 (255)
T PRK14103 153 --------DIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--QLT----GEDPVLDWITGTALRPVR-ERLS--D 214 (255)
T ss_pred --------ccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--eCC----Cchhhhhhhhccchhhhh-hhCC--H
Confidence 012334556789999999999999 987655542211 111 134577777755 35666 4688 8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 017747 332 GVLDNLFEIYGRLVDEEM 349 (366)
Q Consensus 332 ~i~d~lf~r~~~~~~~~~ 349 (366)
+.++++.+.+.+.+++.+
T Consensus 215 ~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 215 DSWEQFRAELIPLLREAY 232 (255)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 888999999999988875
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.45 E-value=2.5e-12 Score=121.06 Aligned_cols=192 Identities=14% Similarity=0.182 Sum_probs=123.5
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEE
Q 017747 15 PTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFY 94 (366)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~ 94 (366)
..+|++++.+|+.+...++..+.. ...-+|+|+|||+|.++.. +.+. ..+++
T Consensus 17 a~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~--------l~~~----------~~~v~ 68 (251)
T PRK10258 17 AAHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRY--------WRER----------GSQVT 68 (251)
T ss_pred HHhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHH--------HHHc----------CCeEE
Confidence 458999999999998887765542 2357899999999988754 2221 26789
Q ss_pred ecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCC
Q 017747 95 LNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGES 174 (366)
Q Consensus 95 ~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~ 174 (366)
..|+....-...-+.. ....|+. +++..-.+|++++|+++|+.++||+.+.+
T Consensus 69 ~~D~s~~~l~~a~~~~---------------~~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d~~---------- 120 (251)
T PRK10258 69 ALDLSPPMLAQARQKD---------------AADHYLA---GDIESLPLATATFDLAWSNLAVQWCGNLS---------- 120 (251)
T ss_pred EEECCHHHHHHHHhhC---------------CCCCEEE---cCcccCcCCCCcEEEEEECchhhhcCCHH----------
Confidence 9998653222111111 0112333 35544457889999999999999976532
Q ss_pred CccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcC
Q 017747 175 INKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQG 254 (366)
Q Consensus 175 ~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG 254 (366)
.+|+.-.+-|+|||.++++.++.++ +.+ +.++|..+ +
T Consensus 121 -----------------------------~~l~~~~~~Lk~gG~l~~~~~~~~~----------~~e-l~~~~~~~--~- 157 (251)
T PRK10258 121 -----------------------------TALRELYRVVRPGGVVAFTTLVQGS----------LPE-LHQAWQAV--D- 157 (251)
T ss_pred -----------------------------HHHHHHHHHcCCCeEEEEEeCCCCc----------hHH-HHHHHHHh--c-
Confidence 2245557899999999999988764 222 55666543 1
Q ss_pred ccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHhhhhH
Q 017747 255 EIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQEST 322 (366)
Q Consensus 255 ~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~ 322 (366)
......-+++.+|+.+.+...+ +++ ..+.+...+ + .+..+...+|..-...
T Consensus 158 --------~~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~f-~------~~~~~l~~lk~~G~~~ 208 (251)
T PRK10258 158 --------ERPHANRFLPPDAIEQALNGWR-YQH-HIQPITLWF-D------DALSAMRSLKGIGATH 208 (251)
T ss_pred --------cCCccccCCCHHHHHHHHHhCC-cee-eeeEEEEEC-C------CHHHHHHHHHHhCCCC
Confidence 1123445788999999998766 544 344444443 1 2345666666665443
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=6.1e-12 Score=116.00 Aligned_cols=216 Identities=19% Similarity=0.243 Sum_probs=133.3
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceE
Q 017747 14 GPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHF 93 (366)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v 93 (366)
...+|++.+..|+.+...+.+.+.... ...+.+|+|+|||+|..+.. +.+. .|..++
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~--------l~~~--------~~~~~~ 61 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRA--------LLKR--------FPQAEF 61 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHH--------HHHh--------CCCCcE
Confidence 356899999999999988888777531 13458899999999998764 2222 234778
Q ss_pred EecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccC
Q 017747 94 YLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGE 173 (366)
Q Consensus 94 ~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~ 173 (366)
+..|+.....+...+.++ .+-.|+. +++.+..+|++++|+++++.++||+...
T Consensus 62 ~~~D~~~~~~~~~~~~~~--------------~~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~~---------- 114 (240)
T TIGR02072 62 IALDISAGMLAQAKTKLS--------------ENVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDDL---------- 114 (240)
T ss_pred EEEeChHHHHHHHHHhcC--------------CCCeEEe---cchhhCCCCCCceeEEEEhhhhhhccCH----------
Confidence 999987654433333222 1112333 4665666789999999999999997441
Q ss_pred CCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHc
Q 017747 174 SINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQ 253 (366)
Q Consensus 174 ~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~e 253 (366)
..+|....+-|+|||.+++..++..+ +.+ +...+..
T Consensus 115 -----------------------------~~~l~~~~~~L~~~G~l~~~~~~~~~----------~~~-~~~~~~~---- 150 (240)
T TIGR02072 115 -----------------------------SQALSELARVLKPGGLLAFSTFGPGT----------LHE-LRQSFGQ---- 150 (240)
T ss_pred -----------------------------HHHHHHHHHHcCCCcEEEEEeCCccC----------HHH-HHHHHHH----
Confidence 23466778999999999998765543 111 2222221
Q ss_pred CccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHhhhhHHHh-hcCCCcc
Q 017747 254 GEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIH-HFGIGEG 332 (366)
Q Consensus 254 G~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~l~~-~~g~~~~ 332 (366)
....+++.+++.+.+++. |+...++...... .+. ....+..++|......... .++ .+
T Consensus 151 ------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~-~~~----~~~~~~~~l~~~g~~~~~~~~~~--~~ 209 (240)
T TIGR02072 151 ------------HGLRYLSLDELKALLKNS--FELLTLEEELITL-SFD----DPLDVLRHLKKTGANGLSSGRTS--RK 209 (240)
T ss_pred ------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEE-eCC----CHHHHHHHHHHhccCcCCCCCCC--HH
Confidence 123467899999999875 7665555433221 111 1345666777655433321 133 44
Q ss_pred hHHHHHHHHHHH
Q 017747 333 VLDNLFEIYGRL 344 (366)
Q Consensus 333 i~d~lf~r~~~~ 344 (366)
...++.+.|.+.
T Consensus 210 ~~~~~~~~~~~~ 221 (240)
T TIGR02072 210 QLKAFLERYEQE 221 (240)
T ss_pred HHHHHHHHHHHh
Confidence 444444444333
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.14 E-value=5.7e-10 Score=106.20 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=97.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+.. +.++. .|..+|+..|+..++-...-+..+.. .. +. ..++
T Consensus 73 ~~~~VLDlGcGtG~~~~~--------la~~~-------~~~~~V~gvD~S~~ml~~A~~r~~~~-----~~-~~--~~~i 129 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFL--------LSEKV-------GSDGKVMGLDFSSEQLAVAASRQELK-----AK-SC--YKNI 129 (261)
T ss_pred CCCEEEEECCcCCHHHHH--------HHHHh-------CCCCEEEEEECCHHHHHHHHHHhhhh-----hh-cc--CCCe
Confidence 457999999999998764 22221 23468999999876554443222100 00 00 1122
Q ss_pred -EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 -YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 -f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|+. ++..+-.+|++|+|++++++++||+.+.. .+|+.
T Consensus 130 ~~~~---~d~~~lp~~~~sfD~V~~~~~l~~~~d~~---------------------------------------~~l~e 167 (261)
T PLN02233 130 EWIE---GDATDLPFDDCYFDAITMGYGLRNVVDRL---------------------------------------KAMQE 167 (261)
T ss_pred EEEE---cccccCCCCCCCEeEEEEecccccCCCHH---------------------------------------HHHHH
Confidence 444 35544458999999999999999975421 23556
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHH-HHHHHHHH-HcCccchhhhccc-CccccCCCHHHHHHHHhhcCc
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELL-SRSLAILV-SQGEIEKEKLVAY-HAHFYAPSKEEIEGEVGREGS 285 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv-~eG~i~~e~~d~f-~~P~y~ps~eEv~~~i~~~gs 285 (366)
-.+-|+|||++++.-++..+... ...+++.. ...+.-+. .-|. .+.+.-+ ..--.+++++|+.+.+++.|
T Consensus 168 i~rvLkpGG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el~~ll~~aG- 240 (261)
T PLN02233 168 MYRVLKPGSRVSILDFNKSTQPF----TTSMQEWMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEELEKLALEAG- 240 (261)
T ss_pred HHHHcCcCcEEEEEECCCCCcHH----HHHHHHHHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHHHHHHHHCC-
Confidence 68999999999999887755310 00111111 10000000 0021 0111000 00123899999999999999
Q ss_pred eEEeeE
Q 017747 286 FKLDQL 291 (366)
Q Consensus 286 f~i~~~ 291 (366)
|++.+.
T Consensus 241 F~~~~~ 246 (261)
T PLN02233 241 FSSAKH 246 (261)
T ss_pred CCEEEE
Confidence 876543
No 8
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=99.54 Aligned_cols=219 Identities=15% Similarity=0.200 Sum_probs=140.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
.+.+|+|+|||+|..|.+ |.++ -|..++..-|-..-+.......+|+. -
T Consensus 30 ~~~~v~DLGCGpGnsTel--------L~~R--------wP~A~i~GiDsS~~Mla~Aa~rlp~~---------------~ 78 (257)
T COG4106 30 RPRRVVDLGCGPGNSTEL--------LARR--------WPDAVITGIDSSPAMLAKAAQRLPDA---------------T 78 (257)
T ss_pred ccceeeecCCCCCHHHHH--------HHHh--------CCCCeEeeccCCHHHHHHHHHhCCCC---------------c
Confidence 468999999999999975 4444 35688999998776666665555531 1
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.-+ + ....-|+...|++||+.+||||.+-|..+ ..-
T Consensus 79 f~~a---D-l~~w~p~~~~dllfaNAvlqWlpdH~~ll---------------------------------------~rL 115 (257)
T COG4106 79 FEEA---D-LRTWKPEQPTDLLFANAVLQWLPDHPELL---------------------------------------PRL 115 (257)
T ss_pred eecc---c-HhhcCCCCccchhhhhhhhhhccccHHHH---------------------------------------HHH
Confidence 2221 1 14567999999999999999987655433 334
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccC-ccccCCCHHHHHHHHhhcCceEE
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYH-AHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~-~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
-.+|.|||.|.+.+++.-++ -...++++.++++=...+ +.++. .----+|+..+-+++...+ -+|
T Consensus 116 ~~~L~Pgg~LAVQmPdN~de------------psH~~mr~~A~~~p~~~~-l~~~~~~r~~v~s~a~Yy~lLa~~~-~rv 181 (257)
T COG4106 116 VSQLAPGGVLAVQMPDNLDE------------PSHRLMRETADEAPFAQE-LGGRGLTRAPLPSPAAYYELLAPLA-CRV 181 (257)
T ss_pred HHhhCCCceEEEECCCccCc------------hhHHHHHHHHhcCchhhh-hCccccccCCCCCHHHHHHHhCccc-cee
Confidence 67899999999999766442 123344444444322222 22211 1223468888888888765 344
Q ss_pred eeEEEEeeccCCCCcccchhhhHhhhHHHhhh-hHHHhhcCCCcchHHHHHHHHHHHHHHHHHhcC-----CCcEEEEEE
Q 017747 289 DQLDMFQVERQGHDRGESYGSAVARTVRAIQE-STIIHHFGIGEGVLDNLFEIYGRLVDEEMAKEE-----IKPLTFVLL 362 (366)
Q Consensus 289 ~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e-~~l~~~~g~~~~i~d~lf~r~~~~~~~~~~~~~-----~~~~~~~~~ 362 (366)
+--+.... .+. ..++.++.|+++..- |++ ..++ ++-...+.++|..++++.+-.+. ..|.-++|+
T Consensus 182 DiW~T~Y~--h~l----~~a~aIvdWvkgTgLrP~L-~~L~--e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiV 252 (257)
T COG4106 182 DIWHTTYY--HQL----PGADAIVDWVKGTGLRPYL-DRLD--EEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIV 252 (257)
T ss_pred eeeeeecc--ccC----CCccchhhheeccccceec-cccC--HHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEE
Confidence 33333211 111 135679999997654 777 4577 88899999999999988765431 445556666
Q ss_pred Eee
Q 017747 363 LRK 365 (366)
Q Consensus 363 l~k 365 (366)
-+|
T Consensus 253 A~~ 255 (257)
T COG4106 253 ATR 255 (257)
T ss_pred Eec
Confidence 554
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.08 E-value=2e-09 Score=100.65 Aligned_cols=163 Identities=19% Similarity=0.188 Sum_probs=97.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+.+.+ ..|..+++..|+..+.-...-+.+. . .+. ..++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~p~~~v~gvD~s~~ml~~a~~~~~-------~-~~~--~~~v 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI--------------NQPNVKIIGIDNSQPMVERCRQHIA-------A-YHS--EIPV 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc--------------CCCCCeEEEEeCCHHHHHHHHHHHH-------h-cCC--CCCe
Confidence 45689999999999886532221 2345899999986643333222211 0 111 1122
Q ss_pred -EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 -YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 -f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|+ .+++.+-.++ +.|++++++++||++. +|...+|+.
T Consensus 109 ~~~---~~d~~~~~~~--~~d~v~~~~~l~~~~~-------------------------------------~~~~~~l~~ 146 (239)
T TIGR00740 109 EIL---CNDIRHVEIK--NASMVILNFTLQFLPP-------------------------------------EDRIALLTK 146 (239)
T ss_pred EEE---ECChhhCCCC--CCCEEeeecchhhCCH-------------------------------------HHHHHHHHH
Confidence 33 3567443343 5789999999999742 123456778
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHH-cCccchhhh----cccCccccCCCHHHHHHHHhhc
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVS-QGEIEKEKL----VAYHAHFYAPSKEEIEGEVGRE 283 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~eEv~~~i~~~ 283 (366)
-.+-|+|||+++++-..+.+... ..+.+.+.+..+.. +| .+.+++ +.+.-.....|++|+++.++++
T Consensus 147 i~~~LkpgG~l~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a 218 (239)
T TIGR00740 147 IYEGLNPNGVLVLSEKFRFEDTK-------INHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNV 218 (239)
T ss_pred HHHhcCCCeEEEEeecccCCCHh-------HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHc
Confidence 89999999999998654433211 12233333333332 34 344333 2333344567999999999999
Q ss_pred CceE
Q 017747 284 GSFK 287 (366)
Q Consensus 284 gsf~ 287 (366)
| |+
T Consensus 219 G-F~ 221 (239)
T TIGR00740 219 G-FS 221 (239)
T ss_pred C-Cc
Confidence 9 75
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.06 E-value=1.1e-09 Score=101.58 Aligned_cols=170 Identities=17% Similarity=0.213 Sum_probs=96.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+ .+.. .|..+++..|+..+....+-+.+. . .+ ..++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l--------a~~~-------~~~~~v~gvD~s~~~~~~a~~~~~-------~-~~---~~~v 98 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIAL--------AEAV-------GPEGHVIGLDFSENMLSVGRQKVK-------D-AG---LHNV 98 (231)
T ss_pred CCCEEEEeCCCcCHHHHHH--------HHHh-------CCCCEEEEEECCHHHHHHHHHHHH-------h-cC---CCce
Confidence 3579999999999988642 2211 234789999986543222211111 0 00 1122
Q ss_pred -EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 -YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 -f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
++. +++..-.+|++++|++++..++||++.. ..+|+.
T Consensus 99 ~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------------~~~l~~ 136 (231)
T TIGR02752 99 ELVH---GNAMELPFDDNSFDYVTIGFGLRNVPDY---------------------------------------MQVLRE 136 (231)
T ss_pred EEEE---echhcCCCCCCCccEEEEecccccCCCH---------------------------------------HHHHHH
Confidence 333 4554545788999999999999997542 123556
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhH----HHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcC
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFF----WELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREG 284 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~----~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~g 284 (366)
-.+-|+|||++++.-.+.++.. ....+ +..+...+......+..+.... ......+|+.+|+++.+++.|
T Consensus 137 ~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~aG 210 (231)
T TIGR02752 137 MYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL--QESTRDFPGMDELAEMFQEAG 210 (231)
T ss_pred HHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHcC
Confidence 6789999999998765543321 00000 0001111111111111000000 012236889999999999999
Q ss_pred ceEEeeEEEE
Q 017747 285 SFKLDQLDMF 294 (366)
Q Consensus 285 sf~i~~~e~~ 294 (366)
|++.+++.+
T Consensus 211 -f~~~~~~~~ 219 (231)
T TIGR02752 211 -FKDVEVKSY 219 (231)
T ss_pred -CCeeEEEEc
Confidence 988766654
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.02 E-value=5e-10 Score=104.97 Aligned_cols=167 Identities=16% Similarity=0.234 Sum_probs=107.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|||+|||||.-++.+.+.+ | ..+|+..|...++.+..-+.+... +. ..-.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~------------g----~g~v~~~D~s~~ML~~a~~k~~~~--------~~--~~i~ 104 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV------------G----TGEVVGLDISESMLEVAREKLKKK--------GV--QNVE 104 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc------------C----CceEEEEECCHHHHHHHHHHhhcc--------Cc--cceE
Confidence 57999999999999998643322 2 489999999988776665544320 11 1112
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|+. |++.+-.||++|+|++.+++.||++.+.+..| +--
T Consensus 105 fv~---~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL---------------------------------------~E~ 142 (238)
T COG2226 105 FVV---GDAENLPFPDNSFDAVTISFGLRNVTDIDKAL---------------------------------------KEM 142 (238)
T ss_pred EEE---echhhCCCCCCccCEEEeeehhhcCCCHHHHH---------------------------------------HHH
Confidence 444 58877779999999999999999998866554 344
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHH-HHHHHHHcCccc--hhhhc-ccCccccCCCHHHHHHHHhhcCc
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSR-SLAILVSQGEIE--KEKLV-AYHAHFYAPSKEEIEGEVGREGS 285 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~-al~~mv~eG~i~--~e~~d-~f~~P~y~ps~eEv~~~i~~~gs 285 (366)
+|-|||||++++.=+.+++..+... ........ ++-.+ -.+++ .+.+. -....-.+|+.+++...+++.|
T Consensus 143 ~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~--g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g- 216 (238)
T COG2226 143 YRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLI--GKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG- 216 (238)
T ss_pred HHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhh--ceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-
Confidence 8999999999998777765422110 01111111 11111 01111 11111 1133445899999999999999
Q ss_pred eEEee
Q 017747 286 FKLDQ 290 (366)
Q Consensus 286 f~i~~ 290 (366)
|+...
T Consensus 217 f~~i~ 221 (238)
T COG2226 217 FEEVR 221 (238)
T ss_pred ceEEe
Confidence 87654
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.00 E-value=2e-08 Score=95.72 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=94.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+. +. . ..+|+..|+..+.....-+.... . ..-.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~--------~-~~~v~giD~s~~~~~~a~~~~~~-----------~-~~i~ 102 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EK--------Y-GAHVHGVDICEKMVNIAKLRNSD-----------K-NKIE 102 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hh--------c-CCEEEEEECCHHHHHHHHHHcCc-----------C-CceE
Confidence 45799999999999876431 21 1 26899999876543332221110 0 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.. +++.+..+|++++|+++|..++++++. .|...+|+.-
T Consensus 103 ~~~---~D~~~~~~~~~~FD~V~s~~~l~h~~~-------------------------------------~d~~~~l~~i 142 (263)
T PTZ00098 103 FEA---NDILKKDFPENTFDMIYSRDAILHLSY-------------------------------------ADKKKLFEKC 142 (263)
T ss_pred EEE---CCcccCCCCCCCeEEEEEhhhHHhCCH-------------------------------------HHHHHHHHHH
Confidence 333 577666689999999999888766421 2344567777
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
++-|+|||+++++-....+... + ...+....... ....++++++.+.+++.| |+..
T Consensus 143 ~r~LkPGG~lvi~d~~~~~~~~--------~---~~~~~~~~~~~------------~~~~~~~~~~~~~l~~aG-F~~v 198 (263)
T PTZ00098 143 YKWLKPNGILLITDYCADKIEN--------W---DEEFKAYIKKR------------KYTLIPIQEYGDLIKSCN-FQNV 198 (263)
T ss_pred HHHcCCCcEEEEEEeccccccC--------c---HHHHHHHHHhc------------CCCCCCHHHHHHHHHHCC-CCee
Confidence 9999999999998665543210 1 11111111110 123579999999999999 8876
Q ss_pred eEEE
Q 017747 290 QLDM 293 (366)
Q Consensus 290 ~~e~ 293 (366)
..+.
T Consensus 199 ~~~d 202 (263)
T PTZ00098 199 VAKD 202 (263)
T ss_pred eEEe
Confidence 5553
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.92 E-value=2.9e-08 Score=102.00 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=114.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..++. +.+. . ..+++..|+........-+.. .+.. ..-.
T Consensus 266 ~~~~vLDiGcG~G~~~~~--------la~~--------~-~~~v~gvDiS~~~l~~A~~~~----------~~~~-~~v~ 317 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFY--------MAEN--------F-DVHVVGIDLSVNMISFALERA----------IGRK-CSVE 317 (475)
T ss_pred CCCEEEEEeccCCHHHHH--------HHHh--------c-CCEEEEEECCHHHHHHHHHHh----------hcCC-CceE
Confidence 457999999999987754 2221 1 268999998653221111100 0110 1112
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.. +++....+|++++|+++|..+++|+.+.+ .+|+.-
T Consensus 318 ~~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d~~---------------------------------------~~l~~~ 355 (475)
T PLN02336 318 FEV---ADCTKKTYPDNSFDVIYSRDTILHIQDKP---------------------------------------ALFRSF 355 (475)
T ss_pred EEE---cCcccCCCCCCCEEEEEECCcccccCCHH---------------------------------------HHHHHH
Confidence 333 46767678899999999999999975421 234566
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
++-|+|||+++++...+....+. . .+...+.. . -...++.+++.+.+++.| |++.
T Consensus 356 ~r~LkpgG~l~i~~~~~~~~~~~-----~---~~~~~~~~---~-------------g~~~~~~~~~~~~l~~aG-F~~i 410 (475)
T PLN02336 356 FKWLKPGGKVLISDYCRSPGTPS-----P---EFAEYIKQ---R-------------GYDLHDVQAYGQMLKDAG-FDDV 410 (475)
T ss_pred HHHcCCCeEEEEEEeccCCCCCc-----H---HHHHHHHh---c-------------CCCCCCHHHHHHHHHHCC-Ceee
Confidence 88999999999998876543211 0 11111111 1 124678999999999999 9886
Q ss_pred eEEEEeeccCCCCcccchhhhHhhhHHHhhh--hHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 017747 290 QLDMFQVERQGHDRGESYGSAVARTVRAIQE--STIIHHFGIGEGVLDNLFEIYGRLVDEE 348 (366)
Q Consensus 290 ~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e--~~l~~~~g~~~~i~d~lf~r~~~~~~~~ 348 (366)
..+.+... +...+..+..++.. .-+...+| ++..+.+...+.+.+...
T Consensus 411 ~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 411 IAEDRTDQ---------FLQVLQRELDAVEKEKDEFISDFS--EEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred eeecchHH---------HHHHHHHHHHHHHhCHHHHHHhcC--HHHHHHHHHhHHHHHhhh
Confidence 55433221 33444444444322 12224577 666677666666665543
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=98.92 E-value=1e-08 Score=101.26 Aligned_cols=160 Identities=12% Similarity=0.110 Sum_probs=94.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|.++..+ .+++ ..+|+..|+..+.-...-+.. ...+.. ..-.
T Consensus 118 ~~~~VLDiGCG~G~~~~~L--------a~~~---------g~~v~gvD~s~~~i~~a~~~~--------~~~g~~-~~v~ 171 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYL--------ARKY---------GANVKGITLSPVQAARANALA--------AAQGLS-DKVS 171 (340)
T ss_pred CCCeEEEecCCCCHHHHHH--------HHhc---------CCEEEEEECCHHHHHHHHHHH--------HhcCCC-CceE
Confidence 4578999999999998753 2221 267888888654322221111 111110 1123
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.. +++.+..||++++|+++|..++|++.+. ..+|+.-
T Consensus 172 ~~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~---------------------------------------~~~l~e~ 209 (340)
T PLN02244 172 FQV---ADALNQPFEDGQFDLVWSMESGEHMPDK---------------------------------------RKFVQEL 209 (340)
T ss_pred EEE---cCcccCCCCCCCccEEEECCchhccCCH---------------------------------------HHHHHHH
Confidence 444 4665656899999999999999886431 1245556
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
.+-|+|||++++......+..+...... ..-...+..+. ..+.+| .+.+.+|+.+.+++.| |+..
T Consensus 210 ~rvLkpGG~lvi~~~~~~~~~~~~~~l~---~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v 274 (340)
T PLN02244 210 ARVAAPGGRIIIVTWCHRDLEPGETSLK---PDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDI 274 (340)
T ss_pred HHHcCCCcEEEEEEecccccccccccCC---HHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCee
Confidence 8899999999998776544322111111 01112222221 112344 2458999999999999 8775
Q ss_pred eEE
Q 017747 290 QLD 292 (366)
Q Consensus 290 ~~e 292 (366)
+.+
T Consensus 275 ~~~ 277 (340)
T PLN02244 275 KTE 277 (340)
T ss_pred Eee
Confidence 543
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=1e-08 Score=97.01 Aligned_cols=165 Identities=16% Similarity=0.253 Sum_probs=96.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+.+.+|+|+|||+|..+..+ .+. ..+|+..|+....-..+-+.+. ..+. ..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~l--------a~~----------g~~v~~vD~s~~~l~~a~~~~~--------~~g~--~~~ 94 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKL--------AEL----------GHQVILCDLSAEMIQRAKQAAE--------AKGV--SDN 94 (255)
T ss_pred CCCCEEEEeCCCchHHHHHH--------HHc----------CCEEEEEECCHHHHHHHHHHHH--------hcCC--ccc
Confidence 45689999999999988653 221 1678899986543222211111 1111 112
Q ss_pred -eEEeccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 129 -VYIAGYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 129 -~f~~~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
.|+. +++.+-. ++++++|++++..++||+.+.+ . +|
T Consensus 95 v~~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~-~--------------------------------------~l 132 (255)
T PRK11036 95 MQFIH---CAAQDIAQHLETPVDLILFHAVLEWVADPK-S--------------------------------------VL 132 (255)
T ss_pred eEEEE---cCHHHHhhhcCCCCCEEEehhHHHhhCCHH-H--------------------------------------HH
Confidence 2344 3443321 5678999999999999986522 1 24
Q ss_pred HHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCce
Q 017747 207 RSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSF 286 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf 286 (366)
+.-++-|+|||++++.+...... .+-..+..-+.. +..|+...+.. ...|.+..+++++.+.+++.| |
T Consensus 133 ~~~~~~LkpgG~l~i~~~n~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f 200 (255)
T PRK11036 133 QTLWSVLRPGGALSLMFYNANGL--------LMHNMVAGNFDY-VQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-W 200 (255)
T ss_pred HHHHHHcCCCeEEEEEEECccHH--------HHHHHHccChHH-HHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-C
Confidence 45578999999999987654321 011111111111 12232211111 123567789999999999999 9
Q ss_pred EEeeEEEEe
Q 017747 287 KLDQLDMFQ 295 (366)
Q Consensus 287 ~i~~~e~~~ 295 (366)
++....-+.
T Consensus 201 ~~~~~~gi~ 209 (255)
T PRK11036 201 QIMGKTGVR 209 (255)
T ss_pred eEeeeeeEE
Confidence 987665543
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.89 E-value=7.2e-10 Score=103.91 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=67.9
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||||..|..+ .++ -.|..+|+..|+..++....-+.+.. .+ ..++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l--------~~~-------~~~~~~v~~vD~s~~ML~~a~~k~~~--------~~---~~~i 100 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTREL--------ARR-------VGPNGKVVGVDISPGMLEVARKKLKR--------EG---LQNI 100 (233)
T ss_dssp S--EEEEET-TTSHHHHHH--------GGG-------SS---EEEEEES-HHHHHHHHHHHHH--------TT-----SE
T ss_pred CCCEEEEeCCChHHHHHHH--------HHH-------CCCccEEEEecCCHHHHHHHHHHHHh--------hC---CCCe
Confidence 4689999999999988742 221 13457999999987654444332221 01 1234
Q ss_pred -EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 -YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 -f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|+. ++..+-.||++|+|.+++++.+|-+.+.+. .|+.
T Consensus 101 ~~v~---~da~~lp~~d~sfD~v~~~fglrn~~d~~~---------------------------------------~l~E 138 (233)
T PF01209_consen 101 EFVQ---GDAEDLPFPDNSFDAVTCSFGLRNFPDRER---------------------------------------ALRE 138 (233)
T ss_dssp EEEE----BTTB--S-TT-EEEEEEES-GGG-SSHHH---------------------------------------HHHH
T ss_pred eEEE---cCHHHhcCCCCceeEEEHHhhHHhhCCHHH---------------------------------------HHHH
Confidence 444 467566699999999999999998755322 2445
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHH---HcCccchhhhccc----CccccCCCHHHHHHHHh
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILV---SQGEIEKEKLVAY----HAHFYAPSKEEIEGEVG 281 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv---~eG~i~~e~~d~f----~~P~y~ps~eEv~~~i~ 281 (366)
-.+-|||||++++.=++++... ++..+-..+-..+ --.++..+ .+.+ ..-..||+++|+.+.++
T Consensus 139 ~~RVLkPGG~l~ile~~~p~~~--------~~~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~ 209 (233)
T PF01209_consen 139 MYRVLKPGGRLVILEFSKPRNP--------LLRALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELLE 209 (233)
T ss_dssp HHHHEEEEEEEEEEEEEB-SSH--------HHHHHHHH------------------------------------------
T ss_pred HHHHcCCCeEEEEeeccCCCCc--------hhhceeeeeecccccccccccccc-ccccccccccccccccccccccccc
Confidence 5899999999999888886531 1111111111100 01222222 1111 22234899999999999
Q ss_pred hcCceEEeeE
Q 017747 282 REGSFKLDQL 291 (366)
Q Consensus 282 ~~gsf~i~~~ 291 (366)
+.| |+..+.
T Consensus 210 ~~G-f~~v~~ 218 (233)
T PF01209_consen 210 EAG-FKNVEY 218 (233)
T ss_dssp ----------
T ss_pred ccc-cccccc
Confidence 999 875333
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.87 E-value=2.8e-07 Score=84.65 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=109.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+ .+++ .|..+++..|+..+.....-+... ... ....
T Consensus 19 ~~~~vLdiG~G~G~~~~~~--------a~~~-------~~~~~v~~~d~~~~~~~~a~~~~~----------~~~-~~~~ 72 (241)
T PRK08317 19 PGDRVLDVGCGPGNDAREL--------ARRV-------GPEGRVVGIDRSEAMLALAKERAA----------GLG-PNVE 72 (241)
T ss_pred CCCEEEEeCCCCCHHHHHH--------HHhc-------CCCcEEEEEeCCHHHHHHHHHHhh----------CCC-CceE
Confidence 4579999999999987642 2221 134688999986543222221100 000 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.. +++....++++++|++++..++||+.+.+ .+|+..
T Consensus 73 ~~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~---------------------------------------~~l~~~ 110 (241)
T PRK08317 73 FVR---GDADGLPFPDGSFDAVRSDRVLQHLEDPA---------------------------------------RALAEI 110 (241)
T ss_pred EEe---cccccCCCCCCCceEEEEechhhccCCHH---------------------------------------HHHHHH
Confidence 333 35544457889999999999999976521 234566
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
.+-|+|||++++....-++... .......+..+...|.. . +.- ..+..++.+.+++.| |+..
T Consensus 111 ~~~L~~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~----------~~~---~~~~~~~~~~l~~aG-f~~~ 172 (241)
T PRK08317 111 ARVLRPGGRVVVLDTDWDTLVW-HSGDRALMRKILNFWSD---H----------FAD---PWLGRRLPGLFREAG-LTDI 172 (241)
T ss_pred HHHhcCCcEEEEEecCCCceee-cCCChHHHHHHHHHHHh---c----------CCC---CcHHHHHHHHHHHcC-CCce
Confidence 8899999999998654322110 01111112222222221 1 111 124568999999999 8887
Q ss_pred eEEEEeeccCCCCcccchhhhHhhhHHHhhhhHHHhhcCCCcchHHHHHHHHHHHH
Q 017747 290 QLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGRLV 345 (366)
Q Consensus 290 ~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~l~~~~g~~~~i~d~lf~r~~~~~ 345 (366)
.++.+......... ......+...++.+.+ . -..+++-++++++.+++..
T Consensus 173 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~ 222 (241)
T PRK08317 173 EVEPYTLIETDLKE-ADKGFGLIRAARRAVE----A-GGISADEADAWLADLAQLA 222 (241)
T ss_pred eEEEEEEeccCcch-hhHHHHHHHHHHHHHH----c-CCCCHHHHHHHHHHHHHHH
Confidence 77776544322211 0112223333333322 1 1112555677777666644
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.86 E-value=4e-08 Score=92.63 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=95.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+...+|+|+|||+|.++..+ .+.. ..|..+++.-|+....-...-+.+.. .+. ..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l--------~~~~------~~~~~~v~gvD~S~~ml~~A~~~~~~--------~~~--~~~ 110 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSV--------RRNI------HHDNCKIIAIDNSPAMIERCRRHIDA--------YKA--PTP 110 (247)
T ss_pred CCCCEEEEEcccCCHHHHHH--------HHhc------CCCCCeEEEEeCCHHHHHHHHHHHHh--------cCC--CCC
Confidence 34578999999999988642 2210 13458999999866433322221110 011 112
Q ss_pred e-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 129 ~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
+ ++ .+++.+- |....|+++++.++||++. + +...+|+
T Consensus 111 v~~~---~~d~~~~--~~~~~D~vv~~~~l~~l~~-~------------------------------------~~~~~l~ 148 (247)
T PRK15451 111 VDVI---EGDIRDI--AIENASMVVLNFTLQFLEP-S------------------------------------ERQALLD 148 (247)
T ss_pred eEEE---eCChhhC--CCCCCCEEehhhHHHhCCH-H------------------------------------HHHHHHH
Confidence 2 32 3455433 3345899999999999753 1 1224466
Q ss_pred HHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcc----cCccccCCCHHHHHHHHhhc
Q 017747 208 SRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVA----YHAHFYAPSKEEIEGEVGRE 283 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~----f~~P~y~ps~eEv~~~i~~~ 283 (366)
.-++-|+|||.++++-.-..... ...+.+...|.++....-.+++++.. ..--...-|+++..+.+++.
T Consensus 149 ~i~~~LkpGG~l~l~e~~~~~~~-------~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~a 221 (247)
T PRK15451 149 KIYQGLNPGGALVLSEKFSFEDA-------KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKA 221 (247)
T ss_pred HHHHhcCCCCEEEEEEecCCCcc-------hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHc
Confidence 77899999999999853222211 12233444555554343355555533 22222224899999999999
Q ss_pred CceE
Q 017747 284 GSFK 287 (366)
Q Consensus 284 gsf~ 287 (366)
| |+
T Consensus 222 G-F~ 224 (247)
T PRK15451 222 G-FE 224 (247)
T ss_pred C-ch
Confidence 9 64
No 19
>PRK06202 hypothetical protein; Provisional
Probab=98.81 E-value=2.2e-07 Score=86.56 Aligned_cols=168 Identities=11% Similarity=0.105 Sum_probs=92.6
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
.++.+|+|+|||+|.++..+.... ++ ..+..+++..|+..+.....-+... . .+-
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~--------~g~~~~v~gvD~s~~~l~~a~~~~~-----------~--~~~ 113 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RR--------DGLRLEVTAIDPDPRAVAFARANPR-----------R--PGV 113 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----Hh--------CCCCcEEEEEcCCHHHHHHHHhccc-----------c--CCC
Confidence 356899999999999887532221 11 1334789999997643322211111 0 111
Q ss_pred eEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 129 ~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
-+..+....+ .++++++|+++|+.++||+.+ + ++..+|+.
T Consensus 114 ~~~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d-~------------------------------------~~~~~l~~ 153 (232)
T PRK06202 114 TFRQAVSDEL---VAEGERFDVVTSNHFLHHLDD-A------------------------------------EVVRLLAD 153 (232)
T ss_pred eEEEEecccc---cccCCCccEEEECCeeecCCh-H------------------------------------HHHHHHHH
Confidence 1222211111 137889999999999999855 1 12233444
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcC-ccchhhhcccCccccCCCHHHHHHHHhhcCceE
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQG-EIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFK 287 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG-~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~ 287 (366)
-.+-++ |.+++.-+.+... .+ - +..........| .+.. |....-.-++|++|+.+.+++ | |+
T Consensus 154 ~~r~~~--~~~~i~dl~~~~~-------~~--~-~~~~~~~~~~~~~~~~~---d~~~s~~~~~~~~el~~ll~~-G-f~ 216 (232)
T PRK06202 154 SAALAR--RLVLHNDLIRSRL-------AY--A-LFWAGTRLLSRSSFVHT---DGLLSVRRSYTPAELAALAPQ-G-WR 216 (232)
T ss_pred HHHhcC--eeEEEeccccCHH-------HH--H-HHHHHHHHhccCceeec---cchHHHHhhcCHHHHHHHhhC-C-Ce
Confidence 444444 5666665555421 11 1 111111111112 2222 223344568999999999998 7 99
Q ss_pred EeeEEEEeecc
Q 017747 288 LDQLDMFQVER 298 (366)
Q Consensus 288 i~~~e~~~~~~ 298 (366)
+.....|...|
T Consensus 217 ~~~~~~~~~~~ 227 (232)
T PRK06202 217 VERQWPFRYLL 227 (232)
T ss_pred EEeccceeeEE
Confidence 98877776554
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.76 E-value=3.6e-08 Score=96.75 Aligned_cols=153 Identities=19% Similarity=0.238 Sum_probs=91.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..+.. +.+. .+ -+|+..|.... +..-++... ...+. ..++.
T Consensus 123 g~~VLDIGCG~G~~~~~--------la~~--------g~-~~V~GiD~S~~-~l~q~~a~~-------~~~~~--~~~i~ 175 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWR--------MLGA--------GA-KLVVGIDPSQL-FLCQFEAVR-------KLLGN--DQRAH 175 (322)
T ss_pred CCEEEEeccCCcHHHHH--------HHHc--------CC-CEEEEEcCCHH-HHHHHHHHH-------HhcCC--CCCeE
Confidence 46899999999999864 2221 22 35899995543 222221111 00000 11232
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
+ +++++ +.+-.++++|+++|..++||..+ | ..+|+.-+
T Consensus 176 ~--~~~d~-e~lp~~~~FD~V~s~~vl~H~~d-p--------------------------------------~~~L~~l~ 213 (322)
T PRK15068 176 L--LPLGI-EQLPALKAFDTVFSMGVLYHRRS-P--------------------------------------LDHLKQLK 213 (322)
T ss_pred E--EeCCH-HHCCCcCCcCEEEECChhhccCC-H--------------------------------------HHHHHHHH
Confidence 1 23455 33322789999999999998544 2 12356668
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEee
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQ 290 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~ 290 (366)
+.|+|||++++..+..+..... .++ ..+.+..+...++.||.+++...+++.| |++.+
T Consensus 214 ~~LkpGG~lvl~~~~i~~~~~~-----~l~----------------p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~ 271 (322)
T PRK15068 214 DQLVPGGELVLETLVIDGDENT-----VLV----------------PGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVR 271 (322)
T ss_pred HhcCCCcEEEEEEEEecCCCcc-----ccC----------------chhHHhcCccceeCCCHHHHHHHHHHcC-CceEE
Confidence 8999999999987654432110 000 0111223344456799999999999999 98766
Q ss_pred EEEE
Q 017747 291 LDMF 294 (366)
Q Consensus 291 ~e~~ 294 (366)
+...
T Consensus 272 ~~~~ 275 (322)
T PRK15068 272 IVDV 275 (322)
T ss_pred EEeC
Confidence 6543
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.74 E-value=7.1e-08 Score=94.60 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=94.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..+.. +.+ +..+|+.-|..........+.. ...+.. ..-.|
T Consensus 132 g~~ILDIGCG~G~~s~~--------La~----------~g~~V~GID~s~~~i~~Ar~~~--------~~~~~~-~~i~~ 184 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEP--------LAR----------MGATVTGVDAVDKNVKIARLHA--------DMDPVT-STIEY 184 (322)
T ss_pred CCEEEEeeCCCCHHHHH--------HHH----------cCCEEEEEeCCHHHHHHHHHHH--------HhcCcc-cceeE
Confidence 46999999999998764 222 1268899998764433222111 000000 11124
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
.. +++.+-.++++++|++++..++||+.+.+ .||+..+
T Consensus 185 ~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~~---------------------------------------~~L~~l~ 222 (322)
T PLN02396 185 LC---TTAEKLADEGRKFDAVLSLEVIEHVANPA---------------------------------------EFCKSLS 222 (322)
T ss_pred Ee---cCHHHhhhccCCCCEEEEhhHHHhcCCHH---------------------------------------HHHHHHH
Confidence 44 35544346788999999999999976522 3566778
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHH-HHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELL-SRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
+-|+|||+++++.+.+... .+..... ..-+..++..| ......+.+++|+...+++.| |++.
T Consensus 223 r~LkPGG~liist~nr~~~-------~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~ 285 (322)
T PLN02396 223 ALTIPNGATVLSTINRTMR-------AYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVK 285 (322)
T ss_pred HHcCCCcEEEEEECCcCHH-------HHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEE
Confidence 8899999999998765321 1111111 11111111112 111224789999999999999 9887
Q ss_pred eEEEE
Q 017747 290 QLDMF 294 (366)
Q Consensus 290 ~~e~~ 294 (366)
.+.-+
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 76543
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.74 E-value=1.8e-08 Score=79.08 Aligned_cols=95 Identities=26% Similarity=0.347 Sum_probs=61.0
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEecc
Q 017747 55 ADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGY 134 (366)
Q Consensus 55 aDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~v 134 (366)
||+|||+|.++.. +.++ +..+++..|.....-...-+... . ...-+..
T Consensus 1 LdiG~G~G~~~~~--------l~~~---------~~~~v~~~D~~~~~~~~~~~~~~-----------~--~~~~~~~-- 48 (95)
T PF08241_consen 1 LDIGCGTGRFAAA--------LAKR---------GGASVTGIDISEEMLEQARKRLK-----------N--EGVSFRQ-- 48 (95)
T ss_dssp EEET-TTSHHHHH--------HHHT---------TTCEEEEEES-HHHHHHHHHHTT-----------T--STEEEEE--
T ss_pred CEecCcCCHHHHH--------HHhc---------cCCEEEEEeCCHHHHHHHHhccc-----------c--cCchhee--
Confidence 7999999999875 3221 23889999986532221111111 0 1112344
Q ss_pred CCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017747 135 PGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELV 214 (366)
Q Consensus 135 pgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 214 (366)
+++..-.||++|+|++++..++||+. |...+|+.-.+-||
T Consensus 49 -~d~~~l~~~~~sfD~v~~~~~~~~~~---------------------------------------~~~~~l~e~~rvLk 88 (95)
T PF08241_consen 49 -GDAEDLPFPDNSFDVVFSNSVLHHLE---------------------------------------DPEAALREIYRVLK 88 (95)
T ss_dssp -SBTTSSSS-TT-EEEEEEESHGGGSS---------------------------------------HHHHHHHHHHHHEE
T ss_pred -ehHHhCccccccccccccccceeecc---------------------------------------CHHHHHHHHHHHcC
Confidence 46766679999999999999999981 23445677799999
Q ss_pred cCceEEE
Q 017747 215 VGGRMVL 221 (366)
Q Consensus 215 ~GG~lvl 221 (366)
|||++++
T Consensus 89 ~gG~l~~ 95 (95)
T PF08241_consen 89 PGGRLVI 95 (95)
T ss_dssp EEEEEEE
T ss_pred cCeEEeC
Confidence 9999986
No 23
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.74 E-value=5e-08 Score=84.28 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=88.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+...+|+|+|||+|.++.. +++. + .+++..|........ ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~--------l~~~---------~-~~~~g~D~~~~~~~~------------~~--------- 61 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRA--------LAKR---------G-FEVTGVDISPQMIEK------------RN--------- 61 (161)
T ss_dssp TTTSEEEEESSTTSHHHHH--------HHHT---------T-SEEEEEESSHHHHHH------------TT---------
T ss_pred CCCCEEEEEcCCCCHHHHH--------HHHh---------C-CEEEEEECCHHHHhh------------hh---------
Confidence 4578999999999987653 3221 2 488888875421111 00
Q ss_pred eEEeccCCCcc--cccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFY--GRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 129 ~f~~~vpgSFy--~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
.++..|. ...+|++++|+++|+.+|||+.+ | ..+|
T Consensus 62 ----~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d-~--------------------------------------~~~l 98 (161)
T PF13489_consen 62 ----VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD-P--------------------------------------EEFL 98 (161)
T ss_dssp ----SEEEEEECHTHHCHSSSEEEEEEESSGGGSSH-H--------------------------------------HHHH
T ss_pred ----hhhhhhhhhhhhccccchhhHhhHHHHhhccc-H--------------------------------------HHHH
Confidence 0111221 34478999999999999999764 2 2346
Q ss_pred HHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCce
Q 017747 207 RSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSF 286 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf 286 (366)
+.-.+-|+|||+++++...+... ....+..+ ...... .--..+.+.++++.++++.| |
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~~~~-------------~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~ 156 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNRDDP-------------SPRSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-F 156 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBTTSH-------------HHHHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-E
T ss_pred HHHHHhcCCCCEEEEEEcCCcch-------------hhhHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-C
Confidence 67789999999999999887531 11222221 100000 01125669999999999999 8
Q ss_pred EEee
Q 017747 287 KLDQ 290 (366)
Q Consensus 287 ~i~~ 290 (366)
+|.+
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 24
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.71 E-value=1.4e-06 Score=87.51 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=116.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+ .+. . ..+|+..|+........-+... + . .+
T Consensus 167 ~g~rVLDIGcG~G~~a~~l--------a~~--------~-g~~V~giDlS~~~l~~A~~~~~----------~---l-~v 215 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYA--------AEH--------Y-GVSVVGVTISAEQQKLAQERCA----------G---L-PV 215 (383)
T ss_pred CCCEEEEeCCCccHHHHHH--------HHH--------C-CCEEEEEeCCHHHHHHHHHHhc----------c---C-eE
Confidence 3479999999999988643 221 1 2678888987643332222111 0 1 11
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
....+++ ..+ ++++|.++|...++|+.. +++..+|+.-
T Consensus 216 --~~~~~D~-~~l--~~~fD~Ivs~~~~ehvg~-------------------------------------~~~~~~l~~i 253 (383)
T PRK11705 216 --EIRLQDY-RDL--NGQFDRIVSVGMFEHVGP-------------------------------------KNYRTYFEVV 253 (383)
T ss_pred --EEEECch-hhc--CCCCCEEEEeCchhhCCh-------------------------------------HHHHHHHHHH
Confidence 1112343 233 578999999988888521 2344567778
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccc-cCCCHHHHHHHHhhcCceEE
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHF-YAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eEv~~~i~~~gsf~i 288 (366)
.+-|+|||++++..++.+..... . ..-++.+..|- +.|+.+++....+ .| |++
T Consensus 254 ~r~LkpGG~lvl~~i~~~~~~~~-----------~-------------~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v 307 (383)
T PRK11705 254 RRCLKPDGLFLLHTIGSNKTDTN-----------V-------------DPWINKYIFPNGCLPSVRQIAQASE-GL-FVM 307 (383)
T ss_pred HHHcCCCcEEEEEEccCCCCCCC-----------C-------------CCCceeeecCCCcCCCHHHHHHHHH-CC-cEE
Confidence 99999999999998877642100 0 01123345563 6899999999877 45 888
Q ss_pred eeEEEEeeccCCCCcccchhhhHhhhHHHhhhh--HHHhhcCCCcchHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017747 289 DQLDMFQVERQGHDRGESYGSAVARTVRAIQES--TIIHHFGIGEGVLDNLFEIYGRLVDEEMAKEEIKPLTFVL 361 (366)
Q Consensus 289 ~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~--~l~~~~g~~~~i~d~lf~r~~~~~~~~~~~~~~~~~~~~~ 361 (366)
.+++.+... |+.++..|.+.|-.. -+..-+| ++ .-.++.-|-.-.+..++........+++
T Consensus 308 ~d~~~~~~h---------y~~TL~~W~~~f~~~~~~~~~~~~--~~-~~r~w~~yl~~~~~~F~~~~~~~~q~~~ 370 (383)
T PRK11705 308 EDWHNFGAD---------YDRTLMAWHENFEAAWPELADNYS--ER-FYRMWRYYLLSCAGAFRARDIQLWQVVF 370 (383)
T ss_pred EEEecChhh---------HHHHHHHHHHHHHHHHHHHHHhCC--HH-HHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 666543221 444555554444432 1223344 33 2334555666666666666555555433
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.71 E-value=1.7e-07 Score=86.43 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=96.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..+..+ .+. + ++..+++..|+..+.....-+.+.. .+.. ....|
T Consensus 52 ~~~vldiG~G~G~~~~~l--------~~~-----~--~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~~-~~~~~ 107 (239)
T PRK00216 52 GDKVLDLACGTGDLAIAL--------AKA-----V--GKTGEVVGLDFSEGMLAVGREKLRD--------LGLS-GNVEF 107 (239)
T ss_pred CCeEEEeCCCCCHHHHHH--------HHH-----c--CCCCeEEEEeCCHHHHHHHHHhhcc--------cccc-cCeEE
Confidence 479999999999988753 222 1 1247899999865432222211110 0000 11123
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
.. +++.+..++++++|++++++.+|++++.+ .+|+...
T Consensus 108 ~~---~d~~~~~~~~~~~D~I~~~~~l~~~~~~~---------------------------------------~~l~~~~ 145 (239)
T PRK00216 108 VQ---GDAEALPFPDNSFDAVTIAFGLRNVPDID---------------------------------------KALREMY 145 (239)
T ss_pred Ee---cccccCCCCCCCccEEEEecccccCCCHH---------------------------------------HHHHHHH
Confidence 33 46655557788999999999999875522 2355667
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHH--------HHHHcCccchhhhcc-cCccccCCCHHHHHHHHh
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLA--------ILVSQGEIEKEKLVA-YHAHFYAPSKEEIEGEVG 281 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~--------~mv~eG~i~~e~~d~-f~~P~y~ps~eEv~~~i~ 281 (366)
+-|+|||++++.-........ +..+...+. .+..... +..+. .+.-..+++.+++...++
T Consensus 146 ~~L~~gG~li~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 214 (239)
T PRK00216 146 RVLKPGGRLVILEFSKPTNPP--------LKKAYDFYLFKVLPLIGKLISKNA---EAYSYLAESIRAFPDQEELAAMLE 214 (239)
T ss_pred HhccCCcEEEEEEecCCCchH--------HHHHHHHHHHhhhHHHHHHHcCCc---HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 889999999887655433210 111111111 1111110 00000 011124679999999999
Q ss_pred hcCceEEeeEEEEeec
Q 017747 282 REGSFKLDQLDMFQVE 297 (366)
Q Consensus 282 ~~gsf~i~~~e~~~~~ 297 (366)
+.| |++.+...+.-.
T Consensus 215 ~aG-f~~~~~~~~~~~ 229 (239)
T PRK00216 215 EAG-FERVRYRNLTGG 229 (239)
T ss_pred hCC-CceeeeeeeecC
Confidence 999 888777665433
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.65 E-value=9.6e-08 Score=94.23 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=92.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..++.+ .+. .+..+++..|+..+.....-+... ..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~L--------a~~--------~~~~~VtgVD~S~~mL~~A~~k~~--------------~~~i 162 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGI--------VKH--------VDAKNVTILDQSPHQLAKAKQKEP--------------LKEC 162 (340)
T ss_pred CCCEEEEEecCCcHHHHHH--------HHH--------CCCCEEEEEECCHHHHHHHHHhhh--------------ccCC
Confidence 3579999999999988642 221 122688999986654333222111 0111
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
..+.++..+.-++++++|+++++.++|++.+.. ..|+.-
T Consensus 163 --~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~---------------------------------------~~L~e~ 201 (340)
T PLN02490 163 --KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------------RGIKEA 201 (340)
T ss_pred --eEEeccHHhCCCCCCceeEEEEcChhhhCCCHH---------------------------------------HHHHHH
Confidence 113456655557899999999999999855411 135566
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
.+-|+|||++++.-....+ .| +..-+.+ .-..+++.+|+.+.+++.| |+..
T Consensus 202 ~rvLkPGG~LvIi~~~~p~----------~~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V 252 (340)
T PLN02490 202 YRVLKIGGKACLIGPVHPT----------FW--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDV 252 (340)
T ss_pred HHhcCCCcEEEEEEecCcc----------hh--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEE
Confidence 8999999999886322111 00 1111111 0113579999999999999 9887
Q ss_pred eEEEEeecc
Q 017747 290 QLDMFQVER 298 (366)
Q Consensus 290 ~~e~~~~~~ 298 (366)
+++.+...|
T Consensus 253 ~i~~i~~~~ 261 (340)
T PLN02490 253 KLKRIGPKW 261 (340)
T ss_pred EEEEcChhh
Confidence 776654444
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.64 E-value=2.7e-07 Score=84.18 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=81.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
+.+|+|+|||+|.+++.+ .++ ..+|+.-|+..+.-..+-+.. ...+ ..++
T Consensus 31 ~~~vLDiGcG~G~~a~~L--------a~~----------g~~V~gvD~S~~~i~~a~~~~--------~~~~---~~~v- 80 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYL--------AAN----------GFDVTAWDKNPMSIANLERIK--------AAEN---LDNL- 80 (197)
T ss_pred CCcEEEECCCCCHHHHHH--------HHC----------CCEEEEEeCCHHHHHHHHHHH--------HHcC---CCcc-
Confidence 579999999999999753 221 167888898654222111111 1111 1111
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
..+..++.+ +-+++++|+++|+.++||++. .|...+++.-+
T Consensus 81 -~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~-------------------------------------~~~~~~l~~i~ 121 (197)
T PRK11207 81 -HTAVVDLNN-LTFDGEYDFILSTVVLMFLEA-------------------------------------KTIPGLIANMQ 121 (197)
T ss_pred -eEEecChhh-CCcCCCcCEEEEecchhhCCH-------------------------------------HHHHHHHHHHH
Confidence 112234432 223567999999999999742 13445677778
Q ss_pred HHhccCceEEEE-eecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 211 EELVVGGRMVLI-LLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 211 ~EL~~GG~lvl~-~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
+-|+|||++++. .+...+. +. .. -|-+..+++|+.+.++ | |++.
T Consensus 122 ~~LkpgG~~~~~~~~~~~~~-~~-------------------~~------------~~~~~~~~~el~~~~~--~-~~~~ 166 (197)
T PRK11207 122 RCTKPGGYNLIVAAMDTADY-PC-------------------TV------------GFPFAFKEGELRRYYE--G-WEMV 166 (197)
T ss_pred HHcCCCcEEEEEEEecCCCC-CC-------------------CC------------CCCCccCHHHHHHHhC--C-CeEE
Confidence 999999996554 3332211 00 01 1235578899998887 6 8876
Q ss_pred eEE
Q 017747 290 QLD 292 (366)
Q Consensus 290 ~~e 292 (366)
+.+
T Consensus 167 ~~~ 169 (197)
T PRK11207 167 KYN 169 (197)
T ss_pred Eee
Confidence 653
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.61 E-value=1.8e-07 Score=91.37 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=89.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|..+..+ ... .+ -.|+.-|.......+ |+.... ..+. ...+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~--------~~~--------g~-~~v~GiDpS~~ml~q-~~~~~~-------~~~~--~~~v 173 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRM--------LGH--------GA-KSLVGIDPTVLFLCQ-FEAVRK-------LLDN--DKRA 173 (314)
T ss_pred CCCEEEEeccCCcHHHHHH--------HHc--------CC-CEEEEEcCCHHHHHH-HHHHHH-------Hhcc--CCCe
Confidence 3479999999999987542 111 12 357888865432221 211110 0000 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
.+ .++++ +.+-+.+++|+++|+.++||+.+ |. .+|+.-
T Consensus 174 ~~--~~~~i-e~lp~~~~FD~V~s~gvL~H~~d-p~--------------------------------------~~L~el 211 (314)
T TIGR00452 174 IL--EPLGI-EQLHELYAFDTVFSMGVLYHRKS-PL--------------------------------------EHLKQL 211 (314)
T ss_pred EE--EECCH-HHCCCCCCcCEEEEcchhhccCC-HH--------------------------------------HHHHHH
Confidence 11 22343 45545568999999999999644 21 235667
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
++-|+|||.|++..+..+..... . + ...+.+..+...++.||.+++...+++.| |+..
T Consensus 212 ~r~LkpGG~Lvletl~i~g~~~~-----~----l------------~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V 269 (314)
T TIGR00452 212 KHQLVIKGELVLETLVIDGDLNT-----V----L------------VPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENF 269 (314)
T ss_pred HHhcCCCCEEEEEEEEecCcccc-----c----c------------CchHHHHhccccccCCCHHHHHHHHHHCC-CeEE
Confidence 89999999999987644321100 0 0 00111222344567799999999999999 8875
Q ss_pred eEEE
Q 017747 290 QLDM 293 (366)
Q Consensus 290 ~~e~ 293 (366)
++..
T Consensus 270 ~i~~ 273 (314)
T TIGR00452 270 RILD 273 (314)
T ss_pred EEEe
Confidence 5443
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.60 E-value=7.3e-07 Score=81.37 Aligned_cols=167 Identities=18% Similarity=0.200 Sum_probs=94.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+. +. . +...+++..|+........-+.+. .. .+-.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~~-----~--~~~~~~~~iD~~~~~~~~~~~~~~-----------~~-~~i~ 91 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------KS-----A--PDRGKVTGVDFSSEMLEVAKKKSE-----------LP-LNIE 91 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------Hh-----c--CCCceEEEEECCHHHHHHHHHHhc-----------cC-CCce
Confidence 46899999999999886532 21 1 112688888975422221111111 00 1112
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+.. +++.+..++++++|+++++..+|+..+. ..+|+..
T Consensus 92 ~~~---~d~~~~~~~~~~~D~i~~~~~~~~~~~~---------------------------------------~~~l~~~ 129 (223)
T TIGR01934 92 FIQ---ADAEALPFEDNSFDAVTIAFGLRNVTDI---------------------------------------QKALREM 129 (223)
T ss_pred EEe---cchhcCCCCCCcEEEEEEeeeeCCcccH---------------------------------------HHHHHHH
Confidence 332 4666656788899999999999885431 2346677
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHH---cCccchhhhcccC----ccccCCCHHHHHHHHhh
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVS---QGEIEKEKLVAYH----AHFYAPSKEEIEGEVGR 282 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~---eG~i~~e~~d~f~----~P~y~ps~eEv~~~i~~ 282 (366)
.+.|+|||++++.-.-..... .+..+.+.+..... .+..... .+.+. ....+++.+|++.++++
T Consensus 130 ~~~L~~gG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (223)
T TIGR01934 130 YRVLKPGGRLVILEFSKPANA--------LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKE 200 (223)
T ss_pred HHHcCCCcEEEEEEecCCCch--------hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999998654332211 11112222221110 0111101 11111 11236799999999999
Q ss_pred cCceEEeeEEEEe
Q 017747 283 EGSFKLDQLDMFQ 295 (366)
Q Consensus 283 ~gsf~i~~~e~~~ 295 (366)
.| |++...+.+.
T Consensus 201 aG-f~~~~~~~~~ 212 (223)
T TIGR01934 201 AG-FEEVRYRSLT 212 (223)
T ss_pred cC-Cccceeeeee
Confidence 99 8887666543
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.59 E-value=1.1e-06 Score=80.90 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=89.0
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEe
Q 017747 53 NIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIA 132 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 132 (366)
+|+|+|||+|..+.. +.+. .|..+++..|+..+.....-+.+. ..|.. ..--+..
T Consensus 2 ~vLDiGcG~G~~~~~--------la~~--------~~~~~v~gid~s~~~~~~a~~~~~--------~~gl~-~~i~~~~ 56 (224)
T smart00828 2 RVLDFGCGYGSDLID--------LAER--------HPHLQLHGYTISPEQAEVGRERIR--------ALGLQ-GRIRIFY 56 (224)
T ss_pred eEEEECCCCCHHHHH--------HHHH--------CCCCEEEEEECCHHHHHHHHHHHH--------hcCCC-cceEEEe
Confidence 699999999998764 2222 133678888985543322222111 11111 1112222
Q ss_pred ccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 133 GYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEE 212 (366)
Q Consensus 133 ~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 212 (366)
+++....+ ++++|+++|..++|++.+ +..+|+.-++-
T Consensus 57 ---~d~~~~~~-~~~fD~I~~~~~l~~~~~---------------------------------------~~~~l~~~~~~ 93 (224)
T smart00828 57 ---RDSAKDPF-PDTYDLVFGFEVIHHIKD---------------------------------------KMDLFSNISRH 93 (224)
T ss_pred ---cccccCCC-CCCCCEeehHHHHHhCCC---------------------------------------HHHHHHHHHHH
Confidence 34433334 458999999999999643 22456677899
Q ss_pred hccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEE
Q 017747 213 LVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLD 292 (366)
Q Consensus 213 L~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e 292 (366)
|+|||++++.-+..+... + . ..-..+.|+++.+++.+.+++.| |++.+.+
T Consensus 94 LkpgG~l~i~~~~~~~~~-----------------------~-~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~ 143 (224)
T smart00828 94 LKDGGHLVLADFIANLLS-----------------------A-I-----EHEETTSYLVTREEWAELLARNN-LRVVEGV 143 (224)
T ss_pred cCCCCEEEEEEcccccCc-----------------------c-c-----cccccccccCCHHHHHHHHHHCC-CeEEEeE
Confidence 999999999855322100 0 0 00123456899999999999999 9987776
Q ss_pred EEee
Q 017747 293 MFQV 296 (366)
Q Consensus 293 ~~~~ 296 (366)
.+..
T Consensus 144 ~~~~ 147 (224)
T smart00828 144 DASL 147 (224)
T ss_pred ECcH
Confidence 6543
No 31
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=85.49 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=99.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-.++|+|||-|+.+..+ +.. . --+++..|.... +.+++...+ +++....|
T Consensus 73 fp~a~diGcs~G~v~rhl--------~~e--------~-vekli~~DtS~~----------M~~s~~~~q--dp~i~~~~ 123 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHL--------RGE--------G-VEKLIMMDTSYD----------MIKSCRDAQ--DPSIETSY 123 (325)
T ss_pred CcceeecccchhhhhHHH--------Hhc--------c-hhheeeeecchH----------HHHHhhccC--CCceEEEE
Confidence 356899999999987643 221 1 145677777653 222222111 00011223
Q ss_pred EeccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 131 ~~~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
..+ + .+.| |-++|+|+++||.++||.+++|... ..+
T Consensus 124 ~v~---D-EE~Ldf~ens~DLiisSlslHW~NdLPg~m---------------------------------------~~c 160 (325)
T KOG2940|consen 124 FVG---D-EEFLDFKENSVDLIISSLSLHWTNDLPGSM---------------------------------------IQC 160 (325)
T ss_pred Eec---c-hhcccccccchhhhhhhhhhhhhccCchHH---------------------------------------HHH
Confidence 332 2 2555 8999999999999999999999754 345
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHH-HHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWE-LLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~-~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
...|||.|.++-+++|-++ +++ ..+-.|.+|-.+|-|+.- ..| |-...++-.++..+| |..
T Consensus 161 k~~lKPDg~FiasmlggdT----------LyELR~slqLAelER~GGiSph-----iSP--f~qvrDiG~LL~rAG-F~m 222 (325)
T KOG2940|consen 161 KLALKPDGLFIASMLGGDT----------LYELRCSLQLAELEREGGISPH-----ISP--FTQVRDIGNLLTRAG-FSM 222 (325)
T ss_pred HHhcCCCccchhHHhcccc----------HHHHHHHhhHHHHHhccCCCCC-----cCh--hhhhhhhhhHHhhcC-ccc
Confidence 7889999999999999876 454 245556777777755442 222 335678888999999 876
Q ss_pred eeEE
Q 017747 289 DQLD 292 (366)
Q Consensus 289 ~~~e 292 (366)
..+.
T Consensus 223 ~tvD 226 (325)
T KOG2940|consen 223 LTVD 226 (325)
T ss_pred ceec
Confidence 5544
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.52 E-value=4.8e-07 Score=86.17 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=88.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..++.+...+ .+..+|+..|...+.....-+... ..+ ..++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~---------------g~~~~v~gvD~s~~~l~~A~~~~~--------~~g---~~~v 130 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV---------------GPTGKVIGVDMTPEMLAKARANAR--------KAG---YTNV 130 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh---------------CCCCEEEEECCCHHHHHHHHHHHH--------HcC---CCCE
Confidence 35799999999998776422111 233689999986543332221110 111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
..+.+++.+-.+|++++|+++|+.++||..+.+. .|+.-
T Consensus 131 --~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~---------------------------------------~l~~~ 169 (272)
T PRK11873 131 --EFRLGEIEALPVADNSVDVIISNCVINLSPDKER---------------------------------------VFKEA 169 (272)
T ss_pred --EEEEcchhhCCCCCCceeEEEEcCcccCCCCHHH---------------------------------------HHHHH
Confidence 1222465443478889999999999999543221 23445
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
.+-|+|||++++.-+..... +.+.+...+.-+ .| ......+.+|+.+.+++.| |...
T Consensus 170 ~r~LkpGG~l~i~~~~~~~~---------~~~~~~~~~~~~--~~-----------~~~~~~~~~e~~~~l~~aG-f~~v 226 (272)
T PRK11873 170 FRVLKPGGRFAISDVVLRGE---------LPEEIRNDAELY--AG-----------CVAGALQEEEYLAMLAEAG-FVDI 226 (272)
T ss_pred HHHcCCCcEEEEEEeeccCC---------CCHHHHHhHHHH--hc-----------cccCCCCHHHHHHHHHHCC-CCce
Confidence 78899999999975433221 111122222211 11 1113457899999999999 7765
Q ss_pred eEE
Q 017747 290 QLD 292 (366)
Q Consensus 290 ~~e 292 (366)
++.
T Consensus 227 ~i~ 229 (272)
T PRK11873 227 TIQ 229 (272)
T ss_pred EEE
Confidence 543
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.44 E-value=1.5e-07 Score=75.57 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=49.6
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEecc
Q 017747 55 ADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGY 134 (366)
Q Consensus 55 aDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~v 134 (366)
+|+|||+|..+.. +.+. .|..+++..|.........-+.+.... . .....+...
T Consensus 1 LdiGcG~G~~~~~--------l~~~--------~~~~~~~~~D~s~~~l~~a~~~~~~~~--------~--~~~~~~~~~ 54 (99)
T PF08242_consen 1 LDIGCGTGRLLRA--------LLEE--------LPDARYTGVDISPSMLERARERLAELG--------N--DNFERLRFD 54 (99)
T ss_dssp -EESTTTS-TTTT--------HHHH--------C-EEEEEEEESSSSTTSTTCCCHHHCT-------------EEEEE--
T ss_pred CEeCccChHHHHH--------HHHh--------CCCCEEEEEECCHHHHHHHHHHhhhcC--------C--cceeEEEee
Confidence 6999999999975 3332 144999999998875533322222110 0 011122222
Q ss_pred CCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017747 135 PGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELV 214 (366)
Q Consensus 135 pgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 214 (366)
..+... ..+.+++|+++++.++||+. |+..+|+.-++-|+
T Consensus 55 ~~~~~~-~~~~~~fD~V~~~~vl~~l~---------------------------------------~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 55 VLDLFD-YDPPESFDLVVASNVLHHLE---------------------------------------DIEAVLRNIYRLLK 94 (99)
T ss_dssp SSS----CCC----SEEEEE-TTS--S----------------------------------------HHHHHHHHTTT-T
T ss_pred cCChhh-cccccccceehhhhhHhhhh---------------------------------------hHHHHHHHHHHHcC
Confidence 222211 22337999999999999982 23345677789999
Q ss_pred cCceE
Q 017747 215 VGGRM 219 (366)
Q Consensus 215 ~GG~l 219 (366)
|||+|
T Consensus 95 pgG~l 99 (99)
T PF08242_consen 95 PGGIL 99 (99)
T ss_dssp SS-EE
T ss_pred CCCCC
Confidence 99986
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.41 E-value=1.1e-06 Score=84.69 Aligned_cols=137 Identities=14% Similarity=0.199 Sum_probs=83.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
+-+|+|+|||+|.|++.+ .+. ..+|+.-|.....-..+-+. ... .+ . ++
T Consensus 121 ~~~vLDlGcG~G~~~~~l--------a~~----------g~~V~avD~s~~ai~~~~~~-------~~~-~~---l-~v- 169 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYL--------ALL----------GFDVTAVDINQQSLENLQEI-------AEK-EN---L-NI- 169 (287)
T ss_pred CCCEEEeCCCCCHHHHHH--------HHC----------CCEEEEEECCHHHHHHHHHH-------HHH-cC---C-ce-
Confidence 459999999999999753 111 16888889865432222111 111 11 1 11
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
..+..+... .-+++++|+++|+.++|+++. .++..+|+.-.
T Consensus 170 -~~~~~D~~~-~~~~~~fD~I~~~~vl~~l~~-------------------------------------~~~~~~l~~~~ 210 (287)
T PRK12335 170 -RTGLYDINS-ASIQEEYDFILSTVVLMFLNR-------------------------------------ERIPAIIKNMQ 210 (287)
T ss_pred -EEEEechhc-ccccCCccEEEEcchhhhCCH-------------------------------------HHHHHHHHHHH
Confidence 111123322 223789999999999999742 24556678889
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcc-ccCCCHHHHHHHHhhcCceEEe
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAH-FYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
+-|+|||++++...-..+..+ ...| -+..+++|+++.+.. |+|.
T Consensus 211 ~~LkpgG~~l~v~~~~~~~~~--------------------------------~~~p~~~~~~~~el~~~~~~---~~i~ 255 (287)
T PRK12335 211 EHTNPGGYNLIVCAMDTEDYP--------------------------------CPMPFSFTFKEGELKDYYQD---WEIV 255 (287)
T ss_pred HhcCCCcEEEEEEecccccCC--------------------------------CCCCCCcccCHHHHHHHhCC---CEEE
Confidence 999999997775432221100 1123 356789999998863 8887
Q ss_pred eEE
Q 017747 290 QLD 292 (366)
Q Consensus 290 ~~e 292 (366)
+.+
T Consensus 256 ~~~ 258 (287)
T PRK12335 256 KYN 258 (287)
T ss_pred EEe
Confidence 664
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.40 E-value=5.5e-07 Score=81.97 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=82.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
.+.+|+|+|||+|.+++.+ .++ ..+|+.-|+..+.-..+-+.. .. .+ ..-.
T Consensus 30 ~~~~vLDiGcG~G~~a~~l--------a~~----------g~~V~~iD~s~~~l~~a~~~~-------~~-~~---~~v~ 80 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYL--------SLA----------GYDVRAWDHNPASIASVLDMK-------AR-EN---LPLR 80 (195)
T ss_pred CCCcEEEeCCCCCHHHHHH--------HHC----------CCeEEEEECCHHHHHHHHHHH-------HH-hC---CCce
Confidence 3579999999999999753 221 167899998754333222111 00 01 1111
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+.. .+. ...-+++++|+++|+.++||++. .++..+++.-
T Consensus 81 ~~~---~d~-~~~~~~~~fD~I~~~~~~~~~~~-------------------------------------~~~~~~l~~~ 119 (195)
T TIGR00477 81 TDA---YDI-NAAALNEDYDFIFSTVVFMFLQA-------------------------------------GRVPEIIANM 119 (195)
T ss_pred eEe---ccc-hhccccCCCCEEEEecccccCCH-------------------------------------HHHHHHHHHH
Confidence 111 222 12223468999999999999743 2344567777
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
++-|+|||++++...-..+..+ .| ..|-|..+++|+++.++ + |++.
T Consensus 120 ~~~LkpgG~lli~~~~~~~~~~---------------------~~----------~~~~~~~~~~el~~~f~--~-~~~~ 165 (195)
T TIGR00477 120 QAHTRPGGYNLIVAAMDTADYP---------------------CH----------MPFSFTFKEDELRQYYA--D-WELL 165 (195)
T ss_pred HHHhCCCcEEEEEEecccCCCC---------------------CC----------CCcCccCCHHHHHHHhC--C-CeEE
Confidence 8999999996654322211100 01 11235688999999886 3 8876
Q ss_pred eEE
Q 017747 290 QLD 292 (366)
Q Consensus 290 ~~e 292 (366)
+.+
T Consensus 166 ~~~ 168 (195)
T TIGR00477 166 KYN 168 (195)
T ss_pred Eee
Confidence 665
No 36
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.39 E-value=7.6e-07 Score=81.52 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCch
Q 017747 24 LQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDF 103 (366)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDF 103 (366)
+|+.+.....|.+-.....+..-......+|+|+|||+|..+..+ .+. .|..+++..|......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~l--------a~~--------~p~~~v~gVD~s~~~i 77 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEM--------AKA--------NPDINFIGIEVHEPGV 77 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHH--------HHH--------CCCccEEEEEechHHH
Confidence 455555555566533322221111224679999999999998752 222 2347899999876443
Q ss_pred hHHHhhCchhHHHHhhhcCCCCCCce-EEeccCCCc---ccccCCCCcccEEEcccccccccCCCCcccccccCCCcccc
Q 017747 104 NSVFKALPDFHRQLRNERGGGSSPSV-YIAGYPGSF---YGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGN 179 (366)
Q Consensus 104 n~lf~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSF---y~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~ 179 (366)
..+-+.+. . .+ ..++ ++. ++. +.+.++++++|.+++++..+|.... ....
T Consensus 78 ~~a~~~~~-------~-~~---~~~v~~~~---~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~-~~~~----------- 131 (202)
T PRK00121 78 GKALKKIE-------E-EG---LTNLRLLC---GDAVEVLLDMFPDGSLDRIYLNFPDPWPKKR-HHKR----------- 131 (202)
T ss_pred HHHHHHHH-------H-cC---CCCEEEEe---cCHHHHHHHHcCccccceEEEECCCCCCCcc-cccc-----------
Confidence 33332211 0 01 2233 333 344 2344788999999999888885531 1100
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 017747 180 IYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 180 i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
..+...||+.-++-|+|||++++..
T Consensus 132 -------------------~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 132 -------------------RLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred -------------------ccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 0123456777789999999999976
No 37
>PRK05785 hypothetical protein; Provisional
Probab=98.39 E-value=1.6e-06 Score=80.94 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=51.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
+.+|+|+|||||.++.. +.++ . ..+|+.-|+..++-...- . . .-+
T Consensus 52 ~~~VLDlGcGtG~~~~~--------l~~~--------~-~~~v~gvD~S~~Ml~~a~-----------~------~-~~~ 96 (226)
T PRK05785 52 PKKVLDVAAGKGELSYH--------FKKV--------F-KYYVVALDYAENMLKMNL-----------V------A-DDK 96 (226)
T ss_pred CCeEEEEcCCCCHHHHH--------HHHh--------c-CCEEEEECCCHHHHHHHH-----------h------c-cce
Confidence 67999999999998764 3222 1 158999998765322211 0 0 012
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCC
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVP 164 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p 164 (366)
+ -+++....||++|+|+++|++++||+.+.+
T Consensus 97 ~---~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 97 V---VGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred E---EechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 2 246655558999999999999999976643
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=1.2e-05 Score=78.14 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
....+|+|+|||+|..++. +.++ .|..+++.-|+|. .....-+ .. ...+. ..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~--------~~~~--------~p~~~~~~~D~~~-~~~~a~~-------~~-~~~gl--~~r 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAA--------MLKH--------FPELDSTILNLPG-AIDLVNE-------NA-AEKGV--ADR 200 (306)
T ss_pred CCCCEEEEeCCchhHHHHH--------HHHH--------CCCCEEEEEecHH-HHHHHHH-------HH-HhCCc--cce
Confidence 3457999999999988764 3332 3558888889863 1111111 01 11111 112
Q ss_pred eEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 129 ~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
+..++++|++..+|+ .|+++.+..+|-.+. .+-..+|+.
T Consensus 201 --v~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------------~~~~~il~~ 239 (306)
T TIGR02716 201 --MRGIAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------------QLSTIMCKK 239 (306)
T ss_pred --EEEEecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------------HHHHHHHHH
Confidence 234567998755665 499888888874221 112345677
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
-.+-|+|||++++.=.-.++... . .+..+...+.. -|.. ..+..+++.+|+.+++++.| |+.
T Consensus 240 ~~~~L~pgG~l~i~d~~~~~~~~--~----~~~~~~~~~~~---~~~~--------~~~~~~~~~~e~~~ll~~aG-f~~ 301 (306)
T TIGR02716 240 AFDAMRSGGRLLILDMVIDDPEN--P----NFDYLSHYILG---AGMP--------FSVLGFKEQARYKEILESLG-YKD 301 (306)
T ss_pred HHHhcCCCCEEEEEEeccCCCCC--c----hhhHHHHHHHH---cccc--------cccccCCCHHHHHHHHHHcC-CCe
Confidence 78999999999888443322111 0 11112222111 1211 01224566899999999999 864
Q ss_pred e
Q 017747 289 D 289 (366)
Q Consensus 289 ~ 289 (366)
.
T Consensus 302 v 302 (306)
T TIGR02716 302 V 302 (306)
T ss_pred e
Confidence 3
No 39
>PRK06922 hypothetical protein; Provisional
Probab=98.34 E-value=9.3e-07 Score=93.14 Aligned_cols=116 Identities=26% Similarity=0.253 Sum_probs=74.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|..+.. +.+. .|..+++..|++.+.-..+-+.+.. .+ .+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~--------LA~~--------~P~~kVtGIDIS~~MLe~Ararl~~--------~g---~~ie 470 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDM--------IEEE--------TEDKRIYGIDISENVIDTLKKKKQN--------EG---RSWN 470 (677)
T ss_pred CCCEEEEeCCCCCHHHHH--------HHHh--------CCCCEEEEEECCHHHHHHHHHHhhh--------cC---CCeE
Confidence 357999999999987653 3222 2458999999987544333222110 00 1112
Q ss_pred EEeccCCCccc--ccCCCCcccEEEcccccccc-cCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYG--RLFPNNSLHFIHSSNSLHWL-SKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 130 f~~~vpgSFy~--~lfp~~s~~~~~S~~alhWl-s~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
++.+ +... ..||++++|++++++++||+ +.+|..-. .+| .+|...+|
T Consensus 471 ~I~g---Da~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~----------------------~edl~kiL 520 (677)
T PRK06922 471 VIKG---DAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN----------------------HEVIKKGL 520 (677)
T ss_pred EEEc---chHhCccccCCCCEEEEEEchHHHhhhhhcccccc-----ccc----------------------HHHHHHHH
Confidence 3332 3322 23789999999999999975 44442110 000 25778889
Q ss_pred HHHHHHhccCceEEEE
Q 017747 207 RSRSEELVVGGRMVLI 222 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~ 222 (366)
+.-.+-|+|||++++.
T Consensus 521 reI~RVLKPGGrLII~ 536 (677)
T PRK06922 521 QSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHHcCCCcEEEEE
Confidence 9999999999999996
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.34 E-value=4.2e-06 Score=77.14 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.1
Q ss_pred CccccCCCHHHHHHHHhhcCceEEeeEEEEe
Q 017747 265 HAHFYAPSKEEIEGEVGREGSFKLDQLDMFQ 295 (366)
Q Consensus 265 ~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~ 295 (366)
..++++++++|+..++++.| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998777544
No 41
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.32 E-value=1.7e-06 Score=75.11 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=68.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|..+..+.. +. .|..+++..|+....-+..-+.. +..+ ..++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-------~~--------~~~~~i~gvD~s~~~i~~a~~~~--------~~~~---~~ni 56 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-------EL--------NPGAKIIGVDISEEMIEYAKKRA--------KELG---LDNI 56 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-------HS--------TTTSEEEEEESSHHHHHHHHHHH--------HHTT---STTE
T ss_pred CCCEEEEecCcCcHHHHHHHH-------hc--------CCCCEEEEEECcHHHHHHhhccc--------cccc---cccc
Confidence 468999999999999875322 11 23488999999764333222211 1111 2233
Q ss_pred -EEeccCCCccc--ccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 130 -YIAGYPGSFYG--RLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 130 -f~~~vpgSFy~--~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
|.. +++.+ +.++ +.+|++++..++||+... ..+|
T Consensus 57 ~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~---------------------------------------~~~l 93 (152)
T PF13847_consen 57 EFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPDP---------------------------------------EKVL 93 (152)
T ss_dssp EEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSHH---------------------------------------HHHH
T ss_pred ceEE---eehhccccccC-CCeeEEEEcCchhhccCH---------------------------------------HHHH
Confidence 444 35544 1134 899999999999986552 2234
Q ss_pred HHHHHHhccCceEEEEeec
Q 017747 207 RSRSEELVVGGRMVLILLG 225 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~~~g 225 (366)
+.-.+-|++||.+++....
T Consensus 94 ~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 94 KNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEECC
Confidence 5668999999999999876
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.26 E-value=4.8e-06 Score=75.44 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=23.7
Q ss_pred cccCCCHHHHHHHHhhcCceEEeeEEEEe
Q 017747 267 HFYAPSKEEIEGEVGREGSFKLDQLDMFQ 295 (366)
Q Consensus 267 P~y~ps~eEv~~~i~~~gsf~i~~~e~~~ 295 (366)
+..+++.+|+.+.+++.| |++.....+.
T Consensus 142 ~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 142 NIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred CcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 356889999999999999 9998877663
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.24 E-value=8.1e-05 Score=71.53 Aligned_cols=172 Identities=22% Similarity=0.297 Sum_probs=90.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
-.+|+|+|||-|..++.+ .+++ ..+|....|..+....+-+.+ .+.|. ...+-
T Consensus 63 G~~vLDiGcGwG~~~~~~--------a~~~---------g~~v~gitlS~~Q~~~a~~~~--------~~~gl--~~~v~ 115 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYA--------AERY---------GCHVTGITLSEEQAEYARERI--------REAGL--EDRVE 115 (273)
T ss_dssp T-EEEEES-TTSHHHHHH--------HHHH-----------EEEEEES-HHHHHHHHHHH--------HCSTS--SSTEE
T ss_pred CCEEEEeCCCccHHHHHH--------HHHc---------CcEEEEEECCHHHHHHHHHHH--------HhcCC--CCceE
Confidence 479999999999998753 3322 166777777654322221111 11122 12232
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
+.- .+| ..+ +. ++|-++|--++.-+ + .+++..|++.-.
T Consensus 116 v~~--~D~-~~~-~~-~fD~IvSi~~~Ehv---g----------------------------------~~~~~~~f~~~~ 153 (273)
T PF02353_consen 116 VRL--QDY-RDL-PG-KFDRIVSIEMFEHV---G----------------------------------RKNYPAFFRKIS 153 (273)
T ss_dssp EEE--S-G-GG-----S-SEEEEESEGGGT---C----------------------------------GGGHHHHHHHHH
T ss_pred EEE--eec-ccc-CC-CCCEEEEEechhhc---C----------------------------------hhHHHHHHHHHH
Confidence 222 244 232 22 88999887776543 1 245678889999
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccc-cCCCHHHHHHHHhhcCceEEe
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHF-YAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~eEv~~~i~~~gsf~i~ 289 (366)
+-|+|||++++...+..+.. .. ... ..+.+-+....+|- +.||.+|+...+++.| |+|.
T Consensus 154 ~~LkpgG~~~lq~i~~~~~~---------~~-~~~---------~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~v~ 213 (273)
T PF02353_consen 154 RLLKPGGRLVLQTITHRDPP---------YH-AER---------RSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LEVE 213 (273)
T ss_dssp HHSETTEEEEEEEEEE--HH---------HH-HCT---------TCCCHHHHHHTSTTS---BHHHHHHHHHHTT--EEE
T ss_pred HhcCCCcEEEEEeccccccc---------ch-hhc---------CCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EEEE
Confidence 99999999999988776531 00 000 00001111223443 5689999999999888 8886
Q ss_pred eEEEEeeccCCCCcccchhhhHhhhHHHhhhhHHH
Q 017747 290 QLDMFQVERQGHDRGESYGSAVARTVRAIQESTII 324 (366)
Q Consensus 290 ~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~l~ 324 (366)
+.+.+ +..++.++|+|.+.+.+
T Consensus 214 ~~~~~-------------~~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 214 DVENL-------------GRHYARTLRAWRENFDA 235 (273)
T ss_dssp EEEE--------------HHHHHHHHHHHHHHHHH
T ss_pred EEEEc-------------CcCHHHHHHHHHHHHHH
Confidence 65544 33456666666666553
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.24 E-value=6.2e-06 Score=84.81 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc-e
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS-V 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~ 129 (366)
..+|+|+|||+|.+|..+. +. ..+|+..|......... ....+. .++ .
T Consensus 38 ~~~vLDlGcG~G~~~~~la--------~~----------~~~v~giD~s~~~l~~a-----------~~~~~~--~~~i~ 86 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA--------KK----------AGQVIALDFIESVIKKN-----------ESINGH--YKNVK 86 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH--------hh----------CCEEEEEeCCHHHHHHH-----------HHHhcc--CCceE
Confidence 4589999999999997532 21 14678888754322111 000111 122 2
Q ss_pred EEeccCCCcc--cccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFY--GRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 130 f~~~vpgSFy--~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
|+.+ ++. ...+|++++|+++++.++||++. .++..+|+
T Consensus 87 ~~~~---d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------------~~~~~~l~ 126 (475)
T PLN02336 87 FMCA---DVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------------KEVENLAE 126 (475)
T ss_pred EEEe---cccccccCCCCCCEEEEehhhhHHhCCH-------------------------------------HHHHHHHH
Confidence 4443 443 22378899999999999999743 13456677
Q ss_pred HHHHHhccCceEEEE
Q 017747 208 SRSEELVVGGRMVLI 222 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~ 222 (366)
...+-|+|||+|++.
T Consensus 127 ~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 127 RMVKWLKVGGYIFFR 141 (475)
T ss_pred HHHHhcCCCeEEEEE
Confidence 889999999999885
No 45
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.23 E-value=5.7e-06 Score=79.06 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+...+ . .....+++..|+..+.....-+.. ..-.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~-----~~~~~~v~giD~s~~~l~~A~~~~---------------~~~~ 136 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------P-----EITTMQLFGLDISKVAIKYAAKRY---------------PQVT 136 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------c-----cccCCeEEEECCCHHHHHHHHHhC---------------CCCe
Confidence 45789999999999887543221 1 111257899999764322221111 1112
Q ss_pred EEeccCCCcccccCCCCcccEEEcccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNS 156 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~a 156 (366)
|.. ++..+-.|+++++|+++|..+
T Consensus 137 ~~~---~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 137 FCV---ASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred EEE---eecccCCCcCCceeEEEEecC
Confidence 333 245444588999999998654
No 46
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.21 E-value=5.2e-06 Score=67.65 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
.-+|+|+|||+|..++.+.+ + .|..+++.-|........+-+... . .+. ..++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--------~--------~~~~~v~gvD~s~~~~~~a~~~~~-------~-~~~--~~~i~ 55 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--------L--------FPGARVVGVDISPEMLEIARERAA-------E-EGL--SDRIT 55 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--------H--------HTTSEEEEEESSHHHHHHHHHHHH-------H-TTT--TTTEE
T ss_pred CCEEEEEcCcCCHHHHHHHh--------c--------CCCCEEEEEeCCHHHHHHHHHHHH-------h-cCC--CCCeE
Confidence 46899999999999986322 1 134889999986543333332221 0 111 1233
Q ss_pred EEeccCCCccccc-CCCCcccEEEccc-ccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNNSLHFIHSSN-SLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~s~~~~~S~~-alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
|+. +++ ... -..+.+|+++++. ++|++-.. .+...+|+
T Consensus 56 ~~~---~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~------------------------------------~~~~~~l~ 95 (112)
T PF12847_consen 56 FVQ---GDA-EFDPDFLEPFDLVICSGFTLHFLLPL------------------------------------DERRRVLE 95 (112)
T ss_dssp EEE---SCC-HGGTTTSSCEEEEEECSGSGGGCCHH------------------------------------HHHHHHHH
T ss_pred EEE---Ccc-ccCcccCCCCCEEEECCCccccccch------------------------------------hHHHHHHH
Confidence 444 455 222 2334599999999 77754221 24556678
Q ss_pred HHHHHhccCceEEEEe
Q 017747 208 SRSEELVVGGRMVLIL 223 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~ 223 (366)
.-.+-|+|||+|++..
T Consensus 96 ~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 96 RIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEE
Confidence 8899999999999874
No 47
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.20 E-value=4.6e-06 Score=78.33 Aligned_cols=173 Identities=14% Similarity=0.168 Sum_probs=102.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCC--
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSP-- 127 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~-- 127 (366)
..++++|++||||-.++.+++.+-++- + .-+-+|+..|+..++.+---+.- .+.+.+ ..
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~--------~--~~~~~V~v~Dinp~mL~vgkqRa--------~~~~l~-~~~~ 160 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQF--------G--DRESKVTVLDINPHMLAVGKQRA--------KKRPLK-ASSR 160 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhcccc--------C--CCCceEEEEeCCHHHHHHHHHHH--------hhcCCC-cCCc
Confidence 459999999999999998665552211 1 12377888888765433221111 001222 12
Q ss_pred ceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 128 SVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 128 ~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
-.|++ |+...-.||++++|...+++.+--+.+++..+ .+|
T Consensus 161 ~~w~~---~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l-----------------------~EA-------------- 200 (296)
T KOG1540|consen 161 VEWVE---GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKAL-----------------------REA-------------- 200 (296)
T ss_pred eEEEe---CCcccCCCCCCcceeEEEecceecCCCHHHHH-----------------------HHH--------------
Confidence 23444 57755569999999999999998877755544 233
Q ss_pred HHHHHhccCceEEEEeecCCCCCCC-CCCchhHHH---HHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhc
Q 017747 208 SRSEELVVGGRMVLILLGRIGPDHV-DRGNSFFWE---LLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGRE 283 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~~g~~~~~~~-~~~~~~~~~---~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~ 283 (366)
.|.|||||++.+.-+..-+..+. ..-..+.++ .+.+.+....+.+.+=-| .---||+.||+...++++
T Consensus 201 --YRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLve------SI~rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 201 --YRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVE------SIRRFPPQEEFASMIEDA 272 (296)
T ss_pred --HHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHh------hhhcCCCHHHHHHHHHHc
Confidence 67999999999988877653210 000011111 222222222222211111 112489999999999999
Q ss_pred CceEEee
Q 017747 284 GSFKLDQ 290 (366)
Q Consensus 284 gsf~i~~ 290 (366)
| |+...
T Consensus 273 G-F~~~~ 278 (296)
T KOG1540|consen 273 G-FSSVN 278 (296)
T ss_pred C-Ccccc
Confidence 9 87654
No 48
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.20 E-value=9.7e-06 Score=77.42 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
..+++|+|+|||||.-+--+.- .+.+.... ...+.++|+..|+....-...-+....... ... ....-...
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~----~l~e~~~~---~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~-~~~-~~~~~~~~ 168 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAM----LLAETLPK---AREPDVKILATDIDLKALEKARAGIYPERE-LED-LPKALLAR 168 (264)
T ss_pred CCCEEEEeccccCChHHHHHHH----HHHHHhhh---cCCCCeEEEEEECCHHHHHHHHcCCCCHHH-Hhc-CCHHHHhh
Confidence 3569999999999974221111 12222111 112358999999977655544443321000 000 00000001
Q ss_pred eEEe----------------ccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHH
Q 017747 129 VYIA----------------GYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSK 192 (366)
Q Consensus 129 ~f~~----------------~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ 192 (366)
+|.. -..++..+..+|.+++|+++|.+.|||++. |
T Consensus 169 yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~---------------------------- 219 (264)
T smart00138 169 YFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-P---------------------------- 219 (264)
T ss_pred hEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-H----------------------------
Confidence 1110 011233333356889999999999999754 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 017747 193 AYFKQFQEDFTLFLRSRSEELVVGGRMVLI 222 (366)
Q Consensus 193 ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~ 222 (366)
+....|+.-++-|+|||.|++.
T Consensus 220 --------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 220 --------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred --------HHHHHHHHHHHHhCCCeEEEEE
Confidence 1223456668999999999974
No 49
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=74.02 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-.+.|+|||+|..++. +.+. + -+|+..|+...+.+-+-+. +++-
T Consensus 34 h~~a~DvG~G~Gqa~~~--------iae~---------~-k~VIatD~s~~mL~~a~k~-----------------~~~~ 78 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARG--------IAEH---------Y-KEVIATDVSEAMLKVAKKH-----------------PPVT 78 (261)
T ss_pred cceEEEeccCCCcchHH--------HHHh---------h-hhheeecCCHHHHHHhhcC-----------------CCcc
Confidence 34889999999965543 3332 2 5678888876543322111 1111
Q ss_pred EeccCCCcc----ccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFY----GRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 131 ~~~vpgSFy----~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
-+-+|-++- ..| -+++|||++.+.-|+||+ |+.+|
T Consensus 79 y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF----------------------------------------dle~f 118 (261)
T KOG3010|consen 79 YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF----------------------------------------DLERF 118 (261)
T ss_pred cccCCccccccccccccCCCcceeeehhhhhHHhh----------------------------------------chHHH
Confidence 112333332 233 369999999999999995 45567
Q ss_pred HHHHHHHhccCceEEEEeecCCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~~ 228 (366)
++.-.+-|++.|.++....-+++
T Consensus 119 y~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 119 YKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred HHHHHHHcCCCCCEEEEEEccCC
Confidence 77779999999988887776654
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.20 E-value=7.6e-06 Score=79.54 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=73.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..|..+++.. +. ..+++.-|+....-....+.+.. . .+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l--------------~~-~~~~~~iDiS~~mL~~a~~~l~~-------~-----~p~~ 115 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL--------------RQ-PARYVPIDISADALKESAAALAA-------D-----YPQL 115 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh--------------cc-CCeEEEEECCHHHHHHHHHHHHh-------h-----CCCc
Confidence 35789999999999998654433 11 27899999987543333332221 0 2222
Q ss_pred EEeccCCCccccc-CCCC----cccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNN----SLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTL 204 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~----s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~ 204 (366)
-+.++-|+|.+.+ +|.. ...++++.+++++++. .|...
T Consensus 116 ~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~-------------------------------------~e~~~ 158 (301)
T TIGR03438 116 EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP-------------------------------------EEAVA 158 (301)
T ss_pred eEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------------------HHHHH
Confidence 2334446886543 3333 3556777778888642 24457
Q ss_pred HHHHHHHHhccCceEEEEeecCCC
Q 017747 205 FLRSRSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 205 FL~~Ra~EL~~GG~lvl~~~g~~~ 228 (366)
||+.-++-|+|||+|++.+-...+
T Consensus 159 ~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 159 FLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred HHHHHHHhcCCCCEEEEeccCCCC
Confidence 788888999999999998765544
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.15 E-value=2.7e-05 Score=71.57 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=85.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|..+..+ .+. . ..++..|+........-+.+. . .+. ....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l--------~~~--------~--~~v~~iD~s~~~~~~a~~~~~-------~-~~~--~~~~ 96 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL--------ARL--------G--ANVTGIDASEENIEVAKLHAK-------K-DPL--LKIE 96 (224)
T ss_pred CCCeEEEECCCCCHHHHHH--------Hhc--------C--CeEEEEeCCHHHHHHHHHHHH-------H-cCC--CceE
Confidence 4689999999999877642 111 1 347888875432221111110 0 000 0112
Q ss_pred EEeccCCCcccccCC-CCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFP-NNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~lfp-~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|.. +++-+-..+ ++++|+++++.++|+..+. ..+|+.
T Consensus 97 ~~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~~---------------------------------------~~~l~~ 134 (224)
T TIGR01983 97 YRC---TSVEDLAEKGAKSFDVVTCMEVLEHVPDP---------------------------------------QAFIRA 134 (224)
T ss_pred EEe---CCHHHhhcCCCCCccEEEehhHHHhCCCH---------------------------------------HHHHHH
Confidence 222 233222222 4789999999998886431 234566
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
..+-|+|||.+++....+... ........ .++. .+.+.. .......+.+++++.+.+++.| |+|
T Consensus 135 ~~~~L~~gG~l~i~~~~~~~~-------~~~~~~~~---~~~~-~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-~~i 198 (224)
T TIGR01983 135 CAQLLKPGGILFFSTINRTPK-------SYLLAIVG---AEYI-LRIVPK----GTHDWEKFIKPSELTSWLESAG-LRV 198 (224)
T ss_pred HHHhcCCCcEEEEEecCCCch-------HHHHHHHh---hhhh-hhcCCC----CcCChhhcCCHHHHHHHHHHcC-Cee
Confidence 678899999999876543210 11111111 0111 111110 0111123568999999999998 999
Q ss_pred eeEEEE
Q 017747 289 DQLDMF 294 (366)
Q Consensus 289 ~~~e~~ 294 (366)
..+..+
T Consensus 199 ~~~~~~ 204 (224)
T TIGR01983 199 KDVKGL 204 (224)
T ss_pred eeeeeE
Confidence 777643
No 52
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.15 E-value=2.1e-05 Score=72.50 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=90.9
Q ss_pred cchHHHhhHH---HHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcc
Q 017747 15 PTSYARNSSL---QKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEF 91 (366)
Q Consensus 15 ~~sY~~nS~~---Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~ 91 (366)
+.-|++||.+ |.+..++++.+|.- ..+++--|+|+|||||--+-. | ..+.-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~v--------L----------~~~Gh 73 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSV--------L----------SDSGH 73 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchhe--------e----------ccCCc
Confidence 4478888865 55555555544331 123578899999999987631 2 12347
Q ss_pred eEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccc
Q 017747 92 HFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEM 171 (366)
Q Consensus 92 ~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~ 171 (366)
+++.-|...-+.... ...+.. +.+-.+-.+ .+-.|+++++|-++|-+|+|||=..-.....
T Consensus 74 ~wiGvDiSpsML~~a----------~~~e~e----gdlil~DMG---~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~-- 134 (270)
T KOG1541|consen 74 QWIGVDISPSMLEQA----------VERELE----GDLILCDMG---EGLPFRPGTFDGVISISAVQWLCNADKSLHV-- 134 (270)
T ss_pred eEEeecCCHHHHHHH----------HHhhhh----cCeeeeecC---CCCCCCCCccceEEEeeeeeeecccCccccC--
Confidence 889999875432222 211110 112122111 2344899999999999999997554332211
Q ss_pred cCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCC
Q 017747 172 GESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 172 ~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
| ++.+.+|+..-..-|++|++-|+.+--.+
T Consensus 135 ----------------P----------~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 135 ----------------P----------KKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred ----------------h----------HHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 1 57788999999999999999999985443
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.12 E-value=4.2e-06 Score=75.51 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=75.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
..+|+|+|||+|..++.+ ... .|..+|+.-|...+.-..+-+.+ ...+ ..++
T Consensus 43 ~~~vLDiGcGtG~~s~~l--------a~~--------~~~~~V~~iD~s~~~~~~a~~~~--------~~~~---~~~i~ 95 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL--------AIA--------RPELKLTLLESNHKKVAFLREVK--------AELG---LNNVE 95 (181)
T ss_pred CCeEEEecCCCCccHHHH--------HHH--------CCCCeEEEEeCcHHHHHHHHHHH--------HHhC---CCCeE
Confidence 579999999999998752 221 23378999998765322221111 1111 1232
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
++. ++.. .+.+.+++|+++|.. +|++. .+++.-
T Consensus 96 ~i~---~d~~-~~~~~~~fD~I~s~~-~~~~~------------------------------------------~~~~~~ 128 (181)
T TIGR00138 96 IVN---GRAE-DFQHEEQFDVITSRA-LASLN------------------------------------------VLLELT 128 (181)
T ss_pred EEe---cchh-hccccCCccEEEehh-hhCHH------------------------------------------HHHHHH
Confidence 333 4543 344578999999864 33221 122333
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcc
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAH 267 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 267 (366)
.+-|+|||++++.. |... . ..+....+.|..+| ++..+.+++..|
T Consensus 129 ~~~LkpgG~lvi~~-~~~~----------~-~~~~~~~e~~~~~~-~~~~~~~~~~~~ 173 (181)
T TIGR00138 129 LNLLKVGGYFLAYK-GKKY----------L-DEIEEAKRKCQVLG-VEPLEVPPLTGP 173 (181)
T ss_pred HHhcCCCCEEEEEc-CCCc----------H-HHHHHHHHhhhhcC-ceEeeccccCCC
Confidence 66799999999874 2221 1 12444456666678 566667888887
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.08 E-value=1.7e-05 Score=73.12 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=69.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..|..++ ++. .+.-+|+.-|+.. .+ .++ +-.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~--------~~~-------~~~~~V~aVDi~~--~~----~~~---------------~v~ 94 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAV--------TQI-------GDKGRVIACDILP--MD----PIV---------------GVD 94 (209)
T ss_pred CCCEEEEEcccCCHHHHHHH--------HHc-------CCCceEEEEeccc--cc----CCC---------------CcE
Confidence 34689999999999886532 221 2236888889853 10 011 112
Q ss_pred EEeccCCCcccc--------cCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGR--------LFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQED 201 (366)
Q Consensus 130 f~~~vpgSFy~~--------lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D 201 (366)
++. +++.+. -++++++|+++|+.+.||... |. .+ . ..+ ...
T Consensus 95 ~i~---~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d--------------------~----~~~-~~~ 143 (209)
T PRK11188 95 FLQ---GDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD--------------------I----PRA-MYL 143 (209)
T ss_pred EEe---cCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH--------------------H----HHH-HHH
Confidence 333 466542 267899999999999999442 21 11 0 000 111
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCC
Q 017747 202 FTLFLRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 202 ~~~FL~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
....|+.-.+-|+|||+|++..+...
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 35678888999999999999766544
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.08 E-value=0.00016 Score=66.61 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=24.6
Q ss_pred CccccCCCHHHHHHHHhhcCceEEeeEEEEee
Q 017747 265 HAHFYAPSKEEIEGEVGREGSFKLDQLDMFQV 296 (366)
Q Consensus 265 ~~P~y~ps~eEv~~~i~~~gsf~i~~~e~~~~ 296 (366)
..+.++.+.+++...++..| |++...+.+..
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 217 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERISS 217 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence 34567789999999999999 99877766543
No 56
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.06 E-value=4.6e-06 Score=75.94 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=62.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
++-+++|+|||.|+||+. |.++ | ..|..-|....-...+.+ .....+ . ++
T Consensus 30 ~~g~~LDlgcG~GRNaly--------LA~~-----G-----~~VtAvD~s~~al~~l~~--------~a~~~~---l-~i 79 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALY--------LASQ-----G-----FDVTAVDISPVALEKLQR--------LAEEEG---L-DI 79 (192)
T ss_dssp -SSEEEEES-TTSHHHHH--------HHHT-----T------EEEEEESSHHHHHHHHH--------HHHHTT-----TE
T ss_pred CCCcEEEcCCCCcHHHHH--------HHHC-----C-----CeEEEEECCHHHHHHHHH--------HHhhcC---c-ee
Confidence 468999999999999986 3332 2 889999987543333221 111111 1 12
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
- ..-.+.-+.- +++..|+++|...+|.|.. .. +..+++..
T Consensus 80 ~--~~~~Dl~~~~-~~~~yD~I~st~v~~fL~~---~~----------------------------------~~~i~~~m 119 (192)
T PF03848_consen 80 R--TRVADLNDFD-FPEEYDFIVSTVVFMFLQR---EL----------------------------------RPQIIENM 119 (192)
T ss_dssp E--EEE-BGCCBS--TTTEEEEEEESSGGGS-G---GG----------------------------------HHHHHHHH
T ss_pred E--EEEecchhcc-ccCCcCEEEEEEEeccCCH---HH----------------------------------HHHHHHHH
Confidence 1 1112442333 3478999999999999753 12 12335667
Q ss_pred HHHhccCceEEEEee
Q 017747 210 SEELVVGGRMVLILL 224 (366)
Q Consensus 210 a~EL~~GG~lvl~~~ 224 (366)
.+.++|||.+++..+
T Consensus 120 ~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 120 KAATKPGGYNLIVTF 134 (192)
T ss_dssp HHTEEEEEEEEEEEE
T ss_pred HhhcCCcEEEEEEEe
Confidence 899999999888654
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=0.00031 Score=67.54 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcc-ccCCCHHHHH
Q 017747 199 QEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAH-FYAPSKEEIE 277 (366)
Q Consensus 199 ~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~eEv~ 277 (366)
.+.+..|++.-.+-|+|||+|++-.++....... . .. .-++.+.+| -+.||..++.
T Consensus 152 ~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---------~~-------------~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 152 KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---------FP-------------DFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---------ch-------------HHHHHhCCCCCcCCCHHHHH
Confidence 4567788999999999999999999888764211 0 00 011122333 3668999999
Q ss_pred HHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHhhhhHHHhhcCCCcchH-HHHHHHHHHHHHHHH
Q 017747 278 GEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVL-DNLFEIYGRLVDEEM 349 (366)
Q Consensus 278 ~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~l~~~~g~~~~i~-d~lf~r~~~~~~~~~ 349 (366)
...++.| |.+.+.+.+. ..++.+++.|.+.+-+ +.....+++ +.++.+|+..++..-
T Consensus 209 ~~~~~~~-~~v~~~~~~~-------------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~ 266 (283)
T COG2230 209 ELASEAG-FVVLDVESLR-------------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACA 266 (283)
T ss_pred HHHHhcC-cEEehHhhhc-------------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999998 8885544442 3455666666665543 232101123 344444555555443
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.03 E-value=3e-05 Score=74.93 Aligned_cols=147 Identities=20% Similarity=0.281 Sum_probs=98.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+||+.|+-+.. +.++ .| -.|+.-| |+-.|..-|+.+..+.. . ...+|
T Consensus 116 gk~VLDIGC~nGY~~fr--------M~~~--------GA-~~ViGiD-P~~lf~~QF~~i~~~lg-------~--~~~~~ 168 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFR--------MLGR--------GA-KSVIGID-PSPLFYLQFEAIKHFLG-------Q--DPPVF 168 (315)
T ss_pred CCEEEEecCCCcHHHHH--------Hhhc--------CC-CEEEEEC-CChHHHHHHHHHHHHhC-------C--CccEE
Confidence 46999999999999975 2221 23 5678888 66577776765543321 1 22444
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
...+ . .+.|-+.+++|.+||.-.|=-+.+ |- .. |..-.
T Consensus 169 ~lpl--g-vE~Lp~~~~FDtVF~MGVLYHrr~-Pl-----------------------~~---------------L~~Lk 206 (315)
T PF08003_consen 169 ELPL--G-VEDLPNLGAFDTVFSMGVLYHRRS-PL-----------------------DH---------------LKQLK 206 (315)
T ss_pred EcCc--c-hhhccccCCcCEEEEeeehhccCC-HH-----------------------HH---------------HHHHH
Confidence 4422 2 355545789999999766555443 22 12 45557
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
+-|++||.|||.++.-+.... .-++.++.+..|+--++.||...+...++..| |+-
T Consensus 207 ~~L~~gGeLvLETlvi~g~~~---------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~ 262 (315)
T PF08003_consen 207 DSLRPGGELVLETLVIDGDEN---------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKD 262 (315)
T ss_pred HhhCCCCEEEEEEeeecCCCc---------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cce
Confidence 889999999999887654321 11234455778888899999999999999999 754
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.03 E-value=4.4e-06 Score=67.43 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=60.5
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEec
Q 017747 54 IADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAG 133 (366)
Q Consensus 54 IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~ 133 (366)
|+|+|||+|.++..+.... . ..|+.+++.-|+..+.....-+.... .+ .+.-|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~---------~----~~~~~~~~gvD~s~~~l~~~~~~~~~--------~~---~~~~~~~~ 56 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---------D----AGPSSRVIGVDISPEMLELAKKRFSE--------DG---PKVRFVQA 56 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------------------SEEEEEES-HHHHHHHHHHSHH--------TT---TTSEEEES
T ss_pred CEEeecCCcHHHHHHHHHh---------h----hcccceEEEEECCHHHHHHHHHhchh--------cC---CceEEEEC
Confidence 7999999999998643332 1 12458999999976544333322211 00 22335554
Q ss_pred cCCCcccccCCCCcccEEEcccc-cccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 134 YPGSFYGRLFPNNSLHFIHSSNS-LHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEE 212 (366)
Q Consensus 134 vpgSFy~~lfp~~s~~~~~S~~a-lhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 212 (366)
++-+-.++.+++|+++++.. +|++++ +++..+|+.-++-
T Consensus 57 ---D~~~l~~~~~~~D~v~~~~~~~~~~~~-------------------------------------~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 57 ---DARDLPFSDGKFDLVVCSGLSLHHLSP-------------------------------------EELEALLRRIARL 96 (101)
T ss_dssp ---CTTCHHHHSSSEEEEEE-TTGGGGSSH-------------------------------------HHHHHHHHHHHHT
T ss_pred ---CHhHCcccCCCeeEEEEcCCccCCCCH-------------------------------------HHHHHHHHHHHHH
Confidence 44332367889999999655 888544 4567788888999
Q ss_pred hccCc
Q 017747 213 LVVGG 217 (366)
Q Consensus 213 L~~GG 217 (366)
|+|||
T Consensus 97 l~pgG 101 (101)
T PF13649_consen 97 LRPGG 101 (101)
T ss_dssp EEEEE
T ss_pred hCCCC
Confidence 99998
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.02 E-value=3.3e-05 Score=71.62 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=86.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..+..+ .+. ..+++..|+..+....+-+... . .+ ...-
T Consensus 48 ~~~~vLdiG~G~G~~~~~l--------~~~----------~~~v~~iD~s~~~~~~a~~~~~-------~-~~---~~~~ 98 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESM--------ARL----------GADVTGIDASEENIEVARLHAL-------E-SG---LKID 98 (233)
T ss_pred CCCeEEEeCCCCCHHHHHH--------HHc----------CCeEEEEcCCHHHHHHHHHHHH-------H-cC---CceE
Confidence 3578999999999876532 111 1467888886543221111110 0 00 1111
Q ss_pred EEeccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
+.. +++-.-+ .+++.+|+++++..+++..+. ..+|+.
T Consensus 99 ~~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~---------------------------------------~~~l~~ 136 (233)
T PRK05134 99 YRQ---TTAEELAAEHPGQFDVVTCMEMLEHVPDP---------------------------------------ASFVRA 136 (233)
T ss_pred EEe---cCHHHhhhhcCCCccEEEEhhHhhccCCH---------------------------------------HHHHHH
Confidence 222 2222211 356789999999888875431 124567
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
..+-|+|||+|+++..++... .+...... ...+..+. .. .......+.+++|+.+++++.| |++
T Consensus 137 ~~~~L~~gG~l~v~~~~~~~~-------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~ 200 (233)
T PRK05134 137 CAKLVKPGGLVFFSTLNRNLK-------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEV 200 (233)
T ss_pred HHHHcCCCcEEEEEecCCChH-------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeE
Confidence 788899999999987654221 11111111 11111111 10 1112235678999999999999 888
Q ss_pred eeEEE
Q 017747 289 DQLDM 293 (366)
Q Consensus 289 ~~~e~ 293 (366)
.....
T Consensus 201 v~~~~ 205 (233)
T PRK05134 201 QDITG 205 (233)
T ss_pred eeeee
Confidence 76653
No 61
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.98 E-value=3.8e-05 Score=70.54 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhC
Q 017747 31 TVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKAL 110 (366)
Q Consensus 31 ~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 110 (366)
....++.+.+.. .+...+|+|+|||+|.++.. +.+. .|..+++.-|+..+.....-+.+
T Consensus 29 ~~~~~~~~~l~~-----~~~~~~VLDiGCG~G~~~~~--------L~~~--------~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 29 AKLAMFARALNR-----LPKIASILELGANIGMNLAA--------LKRL--------LPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred HHHHHHHHHHHh-----cCCCCcEEEEecCCCHHHHH--------HHHh--------CCCCeEEEEECCHHHHHHHHhhC
Confidence 344455554442 23467899999999998864 2221 13478999998765433332211
Q ss_pred chhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEccccccccc
Q 017747 111 PDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLS 161 (366)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls 161 (366)
+ ...+. .++..+ .++++++|+++++.++|+++
T Consensus 88 ~---------------~~~~~---~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 88 P---------------NINII---QGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred C---------------CCcEE---EeeccC-CCCCCCEEEEEECChhhhCC
Confidence 1 11122 245555 77899999999999998763
No 62
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=8.6e-05 Score=69.33 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCc
Q 017747 32 VKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALP 111 (366)
Q Consensus 32 ~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~ 111 (366)
-..+|.+....+..-....+.+|+++|||.|.....+++ . .+.|.+.+|+.|-.++--+-+=++-.
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~-------~-------~~n~~l~v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLK-------T-------SPNNRLKVYACDFSPRAIELVKKSSG 118 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhh-------c-------CCCCCeEEEEcCCChHHHHHHHhccc
Confidence 355666666665543222345999999999987764321 1 24455999999987753222211110
Q ss_pred hhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHH
Q 017747 112 DFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVS 191 (366)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~ 191 (366)
+... ....|++-.-++=-...++.+|+|++.--+.| |-+|+.-
T Consensus 119 -----~~e~-----~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pek------------------------ 161 (264)
T KOG2361|consen 119 -----YDES-----RVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPEK------------------------ 161 (264)
T ss_pred -----cchh-----hhcccceeccchhccCCCCcCccceEEEEEEE---eccChHH------------------------
Confidence 0000 11223333323323455677788877654443 4444422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhc-ccCccccC
Q 017747 192 KAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLV-AYHAHFYA 270 (366)
Q Consensus 192 ~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d-~f~~P~y~ 270 (366)
+..=+....+-|||||.|++-=.|+.+-. .+.-- .+-.|+...+- .==.+.||
T Consensus 162 ----------~~~a~~nl~~llKPGG~llfrDYg~~Dla-----------qlRF~-----~~~~i~~nfYVRgDGT~~Yf 215 (264)
T KOG2361|consen 162 ----------MQSVIKNLRTLLKPGGSLLFRDYGRYDLA-----------QLRFK-----KGQCISENFYVRGDGTRAYF 215 (264)
T ss_pred ----------HHHHHHHHHHHhCCCcEEEEeecccchHH-----------HHhcc-----CCceeecceEEccCCceeee
Confidence 22225577889999999999887776521 11110 22223322111 11357799
Q ss_pred CCHHHHHHHHhhcCceEEeeEEE
Q 017747 271 PSKEEIEGEVGREGSFKLDQLDM 293 (366)
Q Consensus 271 ps~eEv~~~i~~~gsf~i~~~e~ 293 (366)
.+.+|++.++.++| |...+++.
T Consensus 216 F~~eeL~~~f~~ag-f~~~~~~~ 237 (264)
T KOG2361|consen 216 FTEEELDELFTKAG-FEEVQLEV 237 (264)
T ss_pred ccHHHHHHHHHhcc-cchhcccc
Confidence 99999999999999 77665554
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.85 E-value=6.8e-05 Score=66.96 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=68.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|..++.+ .+. . .+++..|+....-..+-+.+. . .+ . ++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l--------~~~--------~--~~v~~vD~s~~~~~~a~~~~~-------~-~~---~-~~ 68 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRL--------KGK--------G--KCILTTDINPFAVKELRENAK-------L-NN---V-GL 68 (179)
T ss_pred CCCeEEEeCCChhHHHHHH--------Hhc--------C--CEEEEEECCHHHHHHHHHHHH-------H-cC---C-ce
Confidence 3468999999999988642 121 1 278899986532222211111 0 00 1 12
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
..+.+++++. +.+++|+++|+..+|.....+.. .+.....+..| ..-...+..||+.-
T Consensus 69 --~~~~~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~-----------------~~~~~~~~~~l~~~ 126 (179)
T TIGR00537 69 --DVVMTDLFKG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG-----------------KDGRKVIDRFLDEL 126 (179)
T ss_pred --EEEEcccccc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC-----------------CchHHHHHHHHHhH
Confidence 1123465553 34599999999888765432211 00000000000 00012356788888
Q ss_pred HHHhccCceEEEEeecC
Q 017747 210 SEELVVGGRMVLILLGR 226 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~ 226 (366)
.+-|+|||++++...+.
T Consensus 127 ~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 127 PEILKEGGRVQLIQSSL 143 (179)
T ss_pred HHhhCCCCEEEEEEecc
Confidence 89999999999987444
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.84 E-value=2e-05 Score=65.01 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCceEEEEee
Q 017747 203 TLFLRSRSEELVVGGRMVLILL 224 (366)
Q Consensus 203 ~~FL~~Ra~EL~~GG~lvl~~~ 224 (366)
..+++.-.+.|+|||++++++.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEec
Confidence 3567888999999999999863
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.79 E-value=5.3e-05 Score=75.07 Aligned_cols=107 Identities=16% Similarity=0.312 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-+|+|+|||+|..++. +.++ .|..+|+..|.........-+.+ .. ++ ....+
T Consensus 197 ~g~VLDlGCG~G~ls~~--------la~~--------~p~~~v~~vDis~~Al~~A~~nl-------~~-n~---l~~~~ 249 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAV--------LARH--------SPKIRLTLSDVSAAALESSRATL-------AA-NG---LEGEV 249 (342)
T ss_pred CCeEEEeccCcCHHHHH--------HHHh--------CCCCEEEEEECCHHHHHHHHHHH-------HH-cC---CCCEE
Confidence 35899999999998864 3222 34578999998643222221111 11 11 11111
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
++++.+.. .++++|+++|+-.+||.-.. + ..+...|++.-+
T Consensus 250 ---~~~D~~~~--~~~~fDlIvsNPPFH~g~~~-----~-----------------------------~~~~~~~i~~a~ 290 (342)
T PRK09489 250 ---FASNVFSD--IKGRFDMIISNPPFHDGIQT-----S-----------------------------LDAAQTLIRGAV 290 (342)
T ss_pred ---EEcccccc--cCCCccEEEECCCccCCccc-----c-----------------------------HHHHHHHHHHHH
Confidence 22344443 36789999999999973210 0 134567788889
Q ss_pred HHhccCceEEEEe
Q 017747 211 EELVVGGRMVLIL 223 (366)
Q Consensus 211 ~EL~~GG~lvl~~ 223 (366)
+-|+|||.|++..
T Consensus 291 ~~LkpgG~L~iVa 303 (342)
T PRK09489 291 RHLNSGGELRIVA 303 (342)
T ss_pred HhcCcCCEEEEEE
Confidence 9999999999875
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.79 E-value=3.1e-05 Score=71.00 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=46.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
..+|+|+|||+|..|..+...+ .+.-+|+..|...+.-...-+.+. ..+. ..++
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~---------------~~~g~V~~iD~~~~~~~~a~~~l~--------~~~~--~~~v~ 127 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI---------------ERRGKVYTVEIVKELAIYAAQNIE--------RLGY--WGVVE 127 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc---------------CCCCEEEEEeCCHHHHHHHHHHHH--------HcCC--CCcEE
Confidence 4799999999999986532211 112578888886542222211111 1111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWL 160 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWl 160 (366)
+.. +++.+-+.+.+++|.+++..+++++
T Consensus 128 ~~~---~d~~~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 128 VYH---GDGKRGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred EEE---CCcccCCccCCCccEEEEccCcchh
Confidence 222 4554444455789999999887763
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.78 E-value=0.00021 Score=64.87 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=68.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-+|+|+|||+|..+.. +.++ .|..+++..|+........-+.+. . .+ ..++-
T Consensus 17 ~~~ilDiGcG~G~~~~~--------la~~--------~p~~~v~gvD~~~~~l~~a~~~~~-------~-~~---l~ni~ 69 (194)
T TIGR00091 17 APLHLEIGCGKGRFLID--------MAKQ--------NPDKNFLGIEIHTPIVLAANNKAN-------K-LG---LKNLH 69 (194)
T ss_pred CceEEEeCCCccHHHHH--------HHHh--------CCCCCEEEEEeeHHHHHHHHHHHH-------H-hC---CCCEE
Confidence 45899999999999874 2222 355889999986533222221111 1 11 22442
Q ss_pred EeccCCCcc---cccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFY---GRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 131 ~~~vpgSFy---~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
+ +-++.. ..++|++++|.+++++..+|..+ .... ..+ .-..||+
T Consensus 70 ~--i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~~----------~r~--------------------~~~~~l~ 116 (194)
T TIGR00091 70 V--LCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHNK----------RRI--------------------TQPHFLK 116 (194)
T ss_pred E--EccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Cccc----------ccc--------------------CCHHHHH
Confidence 2 223443 34467889999999999899433 1100 000 0134677
Q ss_pred HHHHHhccCceEEEEe
Q 017747 208 SRSEELVVGGRMVLIL 223 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~ 223 (366)
.-++-|+|||.+++..
T Consensus 117 ~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 117 EYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHhCCCCEEEEEe
Confidence 7899999999999886
No 68
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.77 E-value=0.00078 Score=66.06 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=46.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+..+|+|+|||+|.+++.+ .++ ..+|+..|+..+.....-+..... .....+. ....
T Consensus 144 ~~~~VLDlGcGtG~~a~~l--------a~~----------g~~V~gvD~S~~ml~~A~~~~~~~---~~~~~~~--~~~~ 200 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPL--------ALE----------GAIVSASDISAAMVAEAERRAKEA---LAALPPE--VLPK 200 (315)
T ss_pred CCCEEEEecCCCCHHHHHH--------HHC----------CCEEEEEECCHHHHHHHHHHHHhc---ccccccc--cceE
Confidence 3579999999999998752 221 157899999876544333222110 0000000 1112
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWL 160 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWl 160 (366)
|..+ +. +. .++++|+++|+.++|++
T Consensus 201 f~~~---Dl-~~--l~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 201 FEAN---DL-ES--LSGKYDTVTCLDVLIHY 225 (315)
T ss_pred EEEc---ch-hh--cCCCcCEEEEcCEEEec
Confidence 3332 22 12 26889999999998763
No 69
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.74 E-value=0.00012 Score=69.29 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHH
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGE 279 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~ 279 (366)
+|...||.+.++-|+|||+|+++..-|.=. +-...- .+.+.....|-.|.- .+-=|++++|+..+
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~l--S~~~~i----~~~E~vl~ivp~Gth---------~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTIL--SFAGTI----FLAEIVLRIVPKGTH---------TWEKFINPEELTSI 236 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHH--Hhhccc----cHHHHHHHhcCCCCc---------CHHHcCCHHHHHHH
Confidence 466778899999999999999999877422 100111 122222336667743 34457899999999
Q ss_pred HhhcCceEEeeEE
Q 017747 280 VGREGSFKLDQLD 292 (366)
Q Consensus 280 i~~~gsf~i~~~e 292 (366)
++.++ +.+..+.
T Consensus 237 l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 237 LNANG-AQVNDVV 248 (282)
T ss_pred HHhcC-cchhhhh
Confidence 99987 7765554
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.71 E-value=0.00029 Score=64.24 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=61.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+.--+++|+|||.|.+|.. |..+| -.+...|+...--....+.+. . .++
T Consensus 42 ~ry~~alEvGCs~G~lT~~--------LA~rC----------d~LlavDis~~Al~~Ar~Rl~-----------~--~~~ 90 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTER--------LAPRC----------DRLLAVDISPRALARARERLA-----------G--LPH 90 (201)
T ss_dssp SSEEEEEEE--TTSHHHHH--------HGGGE----------EEEEEEES-HHHHHHHHHHTT-----------T---SS
T ss_pred cccceeEecCCCccHHHHH--------HHHhh----------CceEEEeCCHHHHHHHHHhcC-----------C--CCC
Confidence 3457899999999999975 33332 345666664321111111111 1 222
Q ss_pred e-EEec-cCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAG-YPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 129 ~-f~~~-vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
+ |..+ +|. ..|++++|+++-+-.+++|+. ..|+..++
T Consensus 91 V~~~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~------------------------------------~~~L~~~l 129 (201)
T PF05401_consen 91 VEWIQADVPE-----FWPEGRFDLIVLSEVLYYLDD------------------------------------AEDLRAAL 129 (201)
T ss_dssp EEEEES-TTT--------SS-EEEEEEES-GGGSSS------------------------------------HHHHHHHH
T ss_pred eEEEECcCCC-----CCCCCCeeEEEEehHhHcCCC------------------------------------HHHHHHHH
Confidence 2 3332 442 359999999999999999865 23566777
Q ss_pred HHHHHHhccCceEEEEee
Q 017747 207 RSRSEELVVGGRMVLILL 224 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~~~ 224 (366)
..-.+-|.|||.||+.-.
T Consensus 130 ~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 130 DRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHhCCCCEEEEEEe
Confidence 788899999999999754
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.70 E-value=0.00073 Score=62.57 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=87.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhh--h-cCCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRN--E-RGGGSS 126 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~--~-~~~~~~ 126 (366)
...+|+|+|||.|+|++. +.++ ..+|+..|+...-...+++...-... ... . ...+..
T Consensus 34 ~~~rvLd~GCG~G~da~~--------LA~~----------G~~V~gvD~S~~Ai~~~~~~~~~~~~-~~~~~~~~~~~~~ 94 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAW--------LAEQ----------GHRVLGVELSEIAVEQFFAENGLTPT-VTQQGEFTRYRAG 94 (213)
T ss_pred CCCeEEEeCCCchhHHHH--------HHhC----------CCeEEEEeCCHHHHHHHHHHcCCCcc-eeccccceeeecC
Confidence 347999999999999985 3232 28899999977644443321110000 000 0 000000
Q ss_pred CceEEeccCCCcccccC-CCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 127 PSVYIAGYPGSFYGRLF-PNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 127 ~~~f~~~vpgSFy~~lf-p~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+--|.. ++|++.-. +...+|.++-..++|= +|+ .+...+
T Consensus 95 ~v~~~~---~D~~~~~~~~~~~fD~i~D~~~~~~---l~~----------------------------------~~R~~~ 134 (213)
T TIGR03840 95 NIEIFC---GDFFALTAADLGPVDAVYDRAALIA---LPE----------------------------------EMRQRY 134 (213)
T ss_pred ceEEEE---ccCCCCCcccCCCcCEEEechhhcc---CCH----------------------------------HHHHHH
Confidence 111222 35544221 1346888888887772 343 233445
Q ss_pred HHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCc
Q 017747 206 LRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGS 285 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gs 285 (366)
++.-.+-|+|||++++..+...... ..-|-|.-+++|+++.+.. +
T Consensus 135 ~~~l~~lLkpgG~~ll~~~~~~~~~---------------------------------~~gpp~~~~~~eL~~~f~~-~- 179 (213)
T TIGR03840 135 AAHLLALLPPGARQLLITLDYDQSE---------------------------------MAGPPFSVSPAEVEALYGG-H- 179 (213)
T ss_pred HHHHHHHcCCCCeEEEEEEEcCCCC---------------------------------CCCcCCCCCHHHHHHHhcC-C-
Confidence 6788999999998777766543210 0124477889999988863 2
Q ss_pred eEEeeEEEEe
Q 017747 286 FKLDQLDMFQ 295 (366)
Q Consensus 286 f~i~~~e~~~ 295 (366)
|+|..++..+
T Consensus 180 ~~i~~~~~~~ 189 (213)
T TIGR03840 180 YEIELLESRD 189 (213)
T ss_pred ceEEEEeecc
Confidence 7887776544
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.67 E-value=0.0001 Score=67.95 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=44.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|.+|..+ .+.. .++.+|+..|.-..-...+-+. + ...+. .+..
T Consensus 77 ~~~~VLDiG~GsG~~a~~l--------a~~~-------~~~g~V~~vD~~~~~~~~A~~~-------~-~~~g~--~~v~ 131 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVL--------AEIV-------GRDGLVVSIERIPELAEKAERR-------L-RKLGL--DNVI 131 (215)
T ss_pred CcCEEEEECCCccHHHHHH--------HHHh-------CCCCEEEEEeCCHHHHHHHHHH-------H-HHCCC--CCeE
Confidence 4579999999999999752 2221 2236788888754221111111 1 11111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEccccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSL 157 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~al 157 (366)
++. ++..+-+.+.+.+|++++..+.
T Consensus 132 ~~~---~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 132 VIV---GDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EEE---CCcccCCcccCCCCEEEEcCCc
Confidence 333 4554444455689999877553
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.66 E-value=0.00015 Score=67.59 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=70.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
.+.+|+|+|||+|..++.+. +. .|..+++..|........+-+.+. ..+ ..++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~--------~~--------~~~~~v~~iD~~~~~~~~a~~~~~--------~~~---~~~~ 139 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALA--------KE--------RPDARVTAVDISPEALAVARKNAA--------RLG---LDNV 139 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHH--------HH--------CCCCEEEEEECCHHHHHHHHHHHH--------HcC---CCeE
Confidence 35689999999999887532 21 234789999986543332222111 111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHH-HHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAY-FKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay-~~Q~~~D~~~FL~~ 208 (366)
..+.+++.+ .++++++|+++++--.+..+.... +... + ..-.+. ...+ ......++..|++.
T Consensus 140 --~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~-~~~~---------~--~~~e~~--~~~~~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 140 --TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHL-LDPE---------V--RFHEPR--LALFGGEDGLDFYRRIIAQ 202 (251)
T ss_pred --EEEECchhc-cCcCCceeEEEECCCCCchhhhhh-cChh---------h--hhcCCH--HHHcCCCcHHHHHHHHHHH
Confidence 122346655 467889999999644433222110 0000 0 000000 0000 11224567789999
Q ss_pred HHHHhccCceEEEEe
Q 017747 209 RSEELVVGGRMVLIL 223 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~ 223 (366)
-.+.|+|||++++..
T Consensus 203 ~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 203 APRLLKPGGWLLLEI 217 (251)
T ss_pred HHHhcccCCEEEEEE
Confidence 999999999999864
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.64 E-value=0.00012 Score=73.44 Aligned_cols=110 Identities=22% Similarity=0.231 Sum_probs=69.8
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
-.++|+|||+|..++. +.++ .|+..++.-|+.......+-+... . .+ ..++.+
T Consensus 124 p~vLEIGcGsG~~ll~--------lA~~--------~P~~~~iGIEI~~~~i~~a~~ka~-------~-~g---L~NV~~ 176 (390)
T PRK14121 124 KILIEIGFGSGRHLLY--------QAKN--------NPNKLFIGIEIHTPSIEQVLKQIE-------L-LN---LKNLLI 176 (390)
T ss_pred CeEEEEcCcccHHHHH--------HHHh--------CCCCCEEEEECCHHHHHHHHHHHH-------H-cC---CCcEEE
Confidence 4799999999998864 3232 467899999986543333322211 1 11 234433
Q ss_pred eccCCCc--ccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSF--YGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 132 ~~vpgSF--y~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
.- ++. .-..+|++++|.++.++...|..+ +. ++. -...||..-
T Consensus 177 i~--~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH-----------------------------RRl---v~~~fL~e~ 221 (390)
T PRK14121 177 IN--YDARLLLELLPSNSVEKIFVHFPVPWDKK-PH-----------------------------RRV---ISEDFLNEA 221 (390)
T ss_pred EE--CCHHHhhhhCCCCceeEEEEeCCCCcccc-ch-----------------------------hhc---cHHHHHHHH
Confidence 32 333 124589999999998877777222 10 000 125678888
Q ss_pred HHHhccCceEEEEe
Q 017747 210 SEELVVGGRMVLIL 223 (366)
Q Consensus 210 a~EL~~GG~lvl~~ 223 (366)
++-|+|||.+.+.+
T Consensus 222 ~RvLkpGG~l~l~T 235 (390)
T PRK14121 222 LRVLKPGGTLELRT 235 (390)
T ss_pred HHHcCCCcEEEEEE
Confidence 99999999999986
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.62 E-value=0.00011 Score=73.80 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=64.6
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
.+|+|+|||+|..++. +.++ .|..+|++.|...-.....-+ ....+ +.....++
T Consensus 230 ~~VLDLGCGtGvi~i~--------la~~--------~P~~~V~~vD~S~~Av~~A~~-------N~~~n-~~~~~~~v-- 283 (378)
T PRK15001 230 GEIVDLGCGNGVIGLT--------LLDK--------NPQAKVVFVDESPMAVASSRL-------NVETN-MPEALDRC-- 283 (378)
T ss_pred CeEEEEeccccHHHHH--------HHHh--------CCCCEEEEEECCHHHHHHHHH-------HHHHc-CcccCceE--
Confidence 5899999999998864 3232 356899999986421111111 11111 10000111
Q ss_pred eccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSE 211 (366)
Q Consensus 132 ~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 211 (366)
..+.++.+..+ ++.++|+++|+--+|+...++. .+ ...+++.-.+
T Consensus 284 ~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~-----------------------~i-----------a~~l~~~a~~ 328 (378)
T PRK15001 284 EFMINNALSGV-EPFRFNAVLCNPPFHQQHALTD-----------------------NV-----------AWEMFHHARR 328 (378)
T ss_pred EEEEccccccC-CCCCEEEEEECcCcccCccCCH-----------------------HH-----------HHHHHHHHHH
Confidence 11224555443 5678999999988887433211 01 1235555678
Q ss_pred HhccCceEEEEe
Q 017747 212 ELVVGGRMVLIL 223 (366)
Q Consensus 212 EL~~GG~lvl~~ 223 (366)
-|+|||.|++..
T Consensus 329 ~LkpGG~L~iV~ 340 (378)
T PRK15001 329 CLKINGELYIVA 340 (378)
T ss_pred hcccCCEEEEEE
Confidence 899999999984
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.62 E-value=0.0002 Score=66.14 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=45.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..|..+. +.. .+.-+|+.-|.-.......-+.+ . ..+ ..++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la--------~~~-------~~~~~V~~vE~~~~~~~~a~~~l-------~-~~g---~~~v 129 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA--------EIV-------GKSGKVVTIERIPELAEKAKKTL-------K-KLG---YDNV 129 (212)
T ss_pred CcCEEEEECCcccHHHHHHH--------Hhc-------CCCCEEEEEeCCHHHHHHHHHHH-------H-HcC---CCCe
Confidence 45799999999999996532 211 12357888887542221111111 1 111 2232
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLH 158 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alh 158 (366)
..+-|+..+-+.+.+.+|.+++..+.+
T Consensus 130 --~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 130 --EVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred --EEEECCcccCCCcCCCcCEEEECCCcc
Confidence 122245555556678899999887654
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.61 E-value=0.00012 Score=67.06 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=43.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..|..+ ... . -+++.-|...+....+-+.+. + .+ ..++
T Consensus 78 ~~~~VLeiG~GsG~~t~~l-a~~------------~-----~~v~~vd~~~~~~~~a~~~~~-------~-~~---~~~v 128 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL-AHL------------V-----RRVFSVERIKTLQWEAKRRLK-------Q-LG---LHNV 128 (212)
T ss_pred CCCEEEEECCCccHHHHHH-HHH------------h-----CEEEEEeCCHHHHHHHHHHHH-------H-CC---CCce
Confidence 4589999999999998632 111 0 246666765332222211111 1 11 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccc
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWL 160 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWl 160 (366)
..+.+++.+.+.+.+++|++++..+++++
T Consensus 129 --~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 129 --SVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred --EEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 22334554444445789999998776653
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.58 E-value=0.00013 Score=64.93 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=64.9
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..++. +.++ .|..+|++.|.-..-...+-+.+ .. ++ ...
T Consensus 31 ~~~~vLDlG~G~G~i~~~--------la~~--------~~~~~v~~vDi~~~a~~~a~~n~-------~~-n~---~~~- 82 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLA--------LAKR--------GPDAKVTAVDINPDALELAKRNA-------ER-NG---LEN- 82 (170)
T ss_dssp TTCEEEEETSTTSHHHHH--------HHHT--------STCEEEEEEESBHHHHHHHHHHH-------HH-TT---CTT-
T ss_pred cCCeEEEecCChHHHHHH--------HHHh--------CCCCEEEEEcCCHHHHHHHHHHH-------Hh-cC---ccc-
Confidence 457899999999999875 3332 34578999998643222221111 11 11 222
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+..+..+.++.+ +++++|+++|+-=+|+-.+ .. ..-+..|++.-
T Consensus 83 -v~~~~~d~~~~~-~~~~fD~Iv~NPP~~~~~~--------------------------~~--------~~~~~~~i~~a 126 (170)
T PF05175_consen 83 -VEVVQSDLFEAL-PDGKFDLIVSNPPFHAGGD--------------------------DG--------LDLLRDFIEQA 126 (170)
T ss_dssp -EEEEESSTTTTC-CTTCEEEEEE---SBTTSH--------------------------CH--------HHHHHHHHHHH
T ss_pred -cccccccccccc-cccceeEEEEccchhcccc--------------------------cc--------hhhHHHHHHHH
Confidence 223335676655 4899999999743222110 00 12345667777
Q ss_pred HHHhccCceEEEEe
Q 017747 210 SEELVVGGRMVLIL 223 (366)
Q Consensus 210 a~EL~~GG~lvl~~ 223 (366)
.+-|+|||.|++..
T Consensus 127 ~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 127 RRYLKPGGRLFLVI 140 (170)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhccCCCEEEEEe
Confidence 89999999998865
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=97.56 E-value=0.00046 Score=63.97 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=85.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..++.+ .+. +..+++..|+........-+.+ .. .+ . ++
T Consensus 37 ~~~vLDlGcG~G~~~~~l--------a~~---------~~~~v~~vD~s~~~l~~a~~n~-------~~-~~---~-~~- 86 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAA--------AAA---------GAGSVTAVDISRRAVRSARLNA-------LL-AG---V-DV- 86 (223)
T ss_pred CCeEEEecCCHHHHHHHH--------HHc---------CCCeEEEEECCHHHHHHHHHHH-------HH-hC---C-ee-
Confidence 469999999999987642 111 1147888888653222111111 00 01 1 11
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
..+-+++.. .++++++|+++++--.+..+... ..+ . +....|....+ -..++..|++.-.
T Consensus 87 -~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~-~----~~~~~~~~~~~-----------~~~~~~~~l~~a~ 146 (223)
T PRK14967 87 -DVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPS-R----GPARAWDAGPD-----------GRAVLDRLCDAAP 146 (223)
T ss_pred -EEEECchhh-hccCCCeeEEEECCCCCCCCccc--ccc-c----ChhHhhhCCCc-----------HHHHHHHHHHHHH
Confidence 122256654 46788999999875333221110 000 0 00000000000 1235677888888
Q ss_pred HHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcC
Q 017747 211 EELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREG 284 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~g 284 (366)
+-|+|||++++......+ ..++++.+...| +..+.+.+..+|+ .+..-.....+++.|
T Consensus 147 ~~Lk~gG~l~~~~~~~~~--------------~~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 147 ALLAPGGSLLLVQSELSG--------------VERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred HhcCCCcEEEEEEecccC--------------HHHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 999999999987544321 223334333344 3444455555663 232233445677777
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.54 E-value=0.00015 Score=65.12 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=25.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
...+|+|+|||+|..++.+ .++ .|..+++..|...
T Consensus 31 ~~~~vLDiG~G~G~~~~~l--------a~~--------~~~~~v~~vD~s~ 65 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEA--------ALQ--------FPSLQVTAIERNP 65 (187)
T ss_pred CCCEEEEECCcCCHHHHHH--------HHH--------CCCCEEEEEECCH
Confidence 4579999999999998753 221 2347899999854
No 81
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.51 E-value=0.00035 Score=63.47 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|..++.+ ... .|..+|+.-|.....-..+-+.. ...+ ..++
T Consensus 45 ~g~~VLDiGcGtG~~al~l--------a~~--------~~~~~V~giD~s~~~l~~A~~~~--------~~~~---l~~i 97 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPL--------AIA--------RPELKVTLVDSLGKKIAFLREVA--------AELG---LKNV 97 (187)
T ss_pred CCCeEEEEcCCCCHHHHHH--------HHH--------CCCCeEEEEeCcHHHHHHHHHHH--------HHcC---CCCE
Confidence 3689999999999988753 221 23478999998653222211111 1111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
..+.++..+ +-+++++|++++... .++..|++..
T Consensus 98 --~~~~~d~~~-~~~~~~fDlV~~~~~-------------------------------------------~~~~~~l~~~ 131 (187)
T PRK00107 98 --TVVHGRAEE-FGQEEKFDVVTSRAV-------------------------------------------ASLSDLVELC 131 (187)
T ss_pred --EEEeccHhh-CCCCCCccEEEEccc-------------------------------------------cCHHHHHHHH
Confidence 222234433 333678999998520 1234467788
Q ss_pred HHHhccCceEEEEe
Q 017747 210 SEELVVGGRMVLIL 223 (366)
Q Consensus 210 a~EL~~GG~lvl~~ 223 (366)
++-|+|||++++..
T Consensus 132 ~~~LkpGG~lv~~~ 145 (187)
T PRK00107 132 LPLLKPGGRFLALK 145 (187)
T ss_pred HHhcCCCeEEEEEe
Confidence 89999999999885
No 82
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.50 E-value=0.0012 Score=61.68 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=69.8
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+..-+|+|+|+|+|..+.. +.++ .|.++++.-|||.. ++.... . .+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~--------l~~~--------~P~l~~~v~Dlp~v--------~~~~~~------~----~r 144 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIA--------LARA--------YPNLRATVFDLPEV--------IEQAKE------A----DR 144 (241)
T ss_dssp TTSSEEEEET-TTSHHHHH--------HHHH--------STTSEEEEEE-HHH--------HCCHHH------T----TT
T ss_pred cCccEEEeccCcchHHHHH--------HHHH--------CCCCcceeeccHhh--------hhcccc------c----cc
Confidence 3456899999999998864 3333 46689999999852 111111 1 12
Q ss_pred eEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 129 ~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
+ ..+||+|+ .-+|. .|+++-.+.||=.++ +|-..+|+.
T Consensus 145 v--~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d-------------------------------------~~~~~iL~~ 182 (241)
T PF00891_consen 145 V--EFVPGDFF-DPLPV--ADVYLLRHVLHDWSD-------------------------------------EDCVKILRN 182 (241)
T ss_dssp E--EEEES-TT-TCCSS--ESEEEEESSGGGS-H-------------------------------------HHHHHHHHH
T ss_pred c--ccccccHH-hhhcc--ccceeeehhhhhcch-------------------------------------HHHHHHHHH
Confidence 2 34679999 66787 999999999975332 344567889
Q ss_pred HHHHhccC--ceEEEEeecCCC
Q 017747 209 RSEELVVG--GRMVLILLGRIG 228 (366)
Q Consensus 209 Ra~EL~~G--G~lvl~~~g~~~ 228 (366)
-++.|+|| |++++.=.-.++
T Consensus 183 ~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 183 AAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHhCCCCCCeEEEEeeccCC
Confidence 99999999 999988665544
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.45 E-value=0.00023 Score=62.76 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017747 136 GSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVV 215 (366)
Q Consensus 136 gSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 215 (366)
|+..+-.++++++|++++++++||+.+. ..+|+.-.+-|+|
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~---------------------------------------~~~l~ei~rvLkp 73 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVDR---------------------------------------LRAMKEMYRVLKP 73 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCCH---------------------------------------HHHHHHHHHHcCc
Confidence 3554444789999999999999997431 2345667899999
Q ss_pred CceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcc----ccCCCHHHHHHHHhhcCceEEee
Q 017747 216 GGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAH----FYAPSKEEIEGEVGREGSFKLDQ 290 (366)
Q Consensus 216 GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P----~y~ps~eEv~~~i~~~gsf~i~~ 290 (366)
||++++.-++..+.... ..++..... .-++.-|.+... .+.+..- ..+++++|+.+++++.| |+..+
T Consensus 74 GG~l~i~d~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 74 GSRVSILDFNKSNQSVT----TFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred CeEEEEEECCCCChHHH----HHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 99999987776442110 001100000 000111111111 1122111 35899999999999999 86543
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.42 E-value=0.00059 Score=61.41 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhccCceEEEEee
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLILL 224 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~~~ 224 (366)
.+...+|+.-.+-|+|||++++..+
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEc
Confidence 4567788889999999999999753
No 85
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.41 E-value=0.0017 Score=59.71 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=93.7
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEe
Q 017747 53 NIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIA 132 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 132 (366)
+|+++|||||--...+.. ..|.+++-=+|...+-+.++-.-+... .+.+ . .+++.+-
T Consensus 28 ~vLEiaSGtGqHa~~FA~----------------~lP~l~WqPSD~~~~~~~sI~a~~~~~--~~~N-v----~~P~~lD 84 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ----------------ALPHLTWQPSDPDDNLRPSIRAWIAEA--GLPN-V----RPPLALD 84 (204)
T ss_pred eEEEEcCCccHHHHHHHH----------------HCCCCEEcCCCCChHHHhhHHHHHHhc--CCcc-c----CCCeEee
Confidence 699999999998765322 245688888999887666554322110 0000 0 1122221
Q ss_pred c-cCCCccc--ccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 133 G-YPGSFYG--RLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 133 ~-vpgSFy~--~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+ .+..=.. -.++.+++|.+++.+.+|-.+- .. + ..+++.=
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~---~~----------------------~------------~~lf~~a 127 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINMLHISPW---SA----------------------V------------EGLFAGA 127 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHHHhcCH---HH----------------------H------------HHHHHHH
Confidence 1 1100001 1136789999999999999543 11 1 1234555
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEE
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKL 288 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i 288 (366)
++-|++||.|++--+=..+...++.. +- .+...|+. -+.-+=.+..++|.++-++.| +++
T Consensus 128 ~~~L~~gG~L~~YGPF~~~G~~ts~S-N~---~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L~l 187 (204)
T PF06080_consen 128 ARLLKPGGLLFLYGPFNRDGKFTSES-NA---AFDASLRS--------------RDPEWGIRDIEDVEALAAAHG-LEL 187 (204)
T ss_pred HHhCCCCCEEEEeCCcccCCEeCCcH-HH---HHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC-Ccc
Confidence 89999999999886644443333332 22 34455553 234467899999999999999 554
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.36 E-value=0.0043 Score=57.66 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=83.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCC----CC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGG----GS 125 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~----~~ 125 (366)
+..+|+|+|||.|+|++.+ .++ ..+|+..|+...-...+++... +.... ...+. .+
T Consensus 37 ~~~rvL~~gCG~G~da~~L--------A~~----------G~~V~avD~s~~Ai~~~~~~~~-l~~~~-~~~~~~~~~~~ 96 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWL--------AEQ----------GHEVLGVELSELAVEQFFAENG-LTPQT-RQSGEFEHYQA 96 (218)
T ss_pred CCCeEEEeCCCChHhHHHH--------HhC----------CCeEEEEccCHHHHHHHHHHcC-CCccc-ccccccccccc
Confidence 3479999999999999853 221 2789999987654333332110 00000 00000 00
Q ss_pred CCceEEeccCCCcccccC-CCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHH
Q 017747 126 SPSVYIAGYPGSFYGRLF-PNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTL 204 (366)
Q Consensus 126 ~~~~f~~~vpgSFy~~lf-p~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~ 204 (366)
..-.+.. +++++-.. ....+|+++-..++|= +|+ .+...
T Consensus 97 ~~v~~~~---~D~~~l~~~~~~~fd~v~D~~~~~~---l~~----------------------------------~~R~~ 136 (218)
T PRK13255 97 GEITIYC---GDFFALTAADLADVDAVYDRAALIA---LPE----------------------------------EMRER 136 (218)
T ss_pred CceEEEE---CcccCCCcccCCCeeEEEehHhHhh---CCH----------------------------------HHHHH
Confidence 0011222 24443321 1146788888777773 232 23344
Q ss_pred HHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcC
Q 017747 205 FLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREG 284 (366)
Q Consensus 205 FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~g 284 (366)
+++.-.+-|+|||++++......... ..-|-|.-+++|+++.+. .
T Consensus 137 ~~~~l~~lL~pgG~~~l~~~~~~~~~---------------------------------~~gPp~~~~~~el~~~~~-~- 181 (218)
T PRK13255 137 YVQQLAALLPAGCRGLLVTLDYPQEE---------------------------------LAGPPFSVSDEEVEALYA-G- 181 (218)
T ss_pred HHHHHHHHcCCCCeEEEEEEEeCCcc---------------------------------CCCCCCCCCHHHHHHHhc-C-
Confidence 55777899999997666554433210 012446889999999885 2
Q ss_pred ceEEeeEEEEe
Q 017747 285 SFKLDQLDMFQ 295 (366)
Q Consensus 285 sf~i~~~e~~~ 295 (366)
.|+|..++...
T Consensus 182 ~~~i~~~~~~~ 192 (218)
T PRK13255 182 CFEIELLERQD 192 (218)
T ss_pred CceEEEeeecc
Confidence 28887777543
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.34 E-value=0.00082 Score=64.87 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
+.+|+|+|||+|..++. +.+. .|..+++..|+........-+... .++. ..++
T Consensus 122 ~~~vLDlG~GsG~i~~~--------la~~--------~~~~~v~avDis~~al~~A~~n~~--------~~~~--~~~i~ 175 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIA--------CAYA--------FPEAEVDAVDISPDALAVAEINIE--------RHGL--EDRVT 175 (284)
T ss_pred CCEEEEEeCchhHHHHH--------HHHH--------CCCCEEEEEECCHHHHHHHHHHHH--------HcCC--CCcEE
Confidence 47899999999998875 3222 234789999986432222221111 1111 1122
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHH--HHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYF--KQFQEDFTLFLR 207 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~--~Q~~~D~~~FL~ 207 (366)
|+. +++++. +|++++|+++|+ |+-+....-....+ .+ ...|. .|.. ...-.....|++
T Consensus 176 ~~~---~D~~~~-~~~~~fD~Iv~N---------PPy~~~~~~~~l~~-~~---~~ep~---~al~gg~dGl~~~~~il~ 235 (284)
T TIGR03533 176 LIQ---SDLFAA-LPGRKYDLIVSN---------PPYVDAEDMADLPA-EY---HHEPE---LALASGEDGLDLVRRILA 235 (284)
T ss_pred EEE---Cchhhc-cCCCCccEEEEC---------CCCCCccchhhCCH-hh---hcCHH---HHhcCCCcHHHHHHHHHH
Confidence 333 465544 367789999987 33221100000000 00 00000 0000 011234466888
Q ss_pred HHHHHhccCceEEEEee
Q 017747 208 SRSEELVVGGRMVLILL 224 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~~ 224 (366)
.-.+-|+|||++++.+.
T Consensus 236 ~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 236 EAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHhcCCCCEEEEEEC
Confidence 88899999999998763
No 88
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.33 E-value=0.00053 Score=70.21 Aligned_cols=48 Identities=31% Similarity=0.471 Sum_probs=34.4
Q ss_pred ccc-CCCCcccEEEccccc-ccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 017747 140 GRL-FPNNSLHFIHSSNSL-HWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGG 217 (366)
Q Consensus 140 ~~l-fp~~s~~~~~S~~al-hWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 217 (366)
.|| ||++++|++|++-|+ .|.+.-- ++.- ++ -|-|+|||
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g---------------~~l~-----ev-------------------dRvLRpGG 213 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDG---------------FLLF-----EV-------------------DRVLRPGG 213 (506)
T ss_pred ccccCCccchhhhhcccccccchhccc---------------ceee-----hh-------------------hhhhccCc
Confidence 566 999999999999886 5644421 1111 13 78999999
Q ss_pred eEEEEeecC
Q 017747 218 RMVLILLGR 226 (366)
Q Consensus 218 ~lvl~~~g~ 226 (366)
.++++..-.
T Consensus 214 yfv~S~ppv 222 (506)
T PF03141_consen 214 YFVLSGPPV 222 (506)
T ss_pred eEEecCCcc
Confidence 999997643
No 89
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.32 E-value=0.001 Score=60.39 Aligned_cols=151 Identities=20% Similarity=0.332 Sum_probs=94.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-+|+|+|||.|.+-. .|.+. ..++.+.-++-. ..+ ..+..+ |.
T Consensus 14 gsrVLDLGCGdG~LL~--------~L~~~---------k~v~g~GvEid~---~~v-------~~cv~r--Gv------- 57 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLA--------YLKDE---------KQVDGYGVEIDP---DNV-------AACVAR--GV------- 57 (193)
T ss_pred CCEEEecCCCchHHHH--------HHHHh---------cCCeEEEEecCH---HHH-------HHHHHc--CC-------
Confidence 5899999999998543 23332 126666666522 111 122211 11
Q ss_pred EeccCCCccccc--CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRL--FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 131 ~~~vpgSFy~~l--fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
..+.++-.+-| ||++|+|.++-+-|||=+.+ |..+.
T Consensus 58 -~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL---------------------------------------- 95 (193)
T PF07021_consen 58 -SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL---------------------------------------- 95 (193)
T ss_pred -CEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH----------------------------------------
Confidence 13445665556 89999999999999999877 54331
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcccc------CCCHHHHHHHHhh
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFY------APSKEEIEGEVGR 282 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y------~ps~eEv~~~i~~ 282 (366)
.+=|+.|.+.+++|+.-. .|. .--.++-.|..+..+ .+..+|| +-|..++++..++
T Consensus 96 -~EmlRVgr~~IVsFPNFg-----------~W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 96 -EEMLRVGRRAIVSFPNFG-----------HWR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred -HHHHHhcCeEEEEecChH-----------HHH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHH
Confidence 355788999999984221 233 222333356655542 3444444 6799999999999
Q ss_pred cCceEEeeEEEEeecc
Q 017747 283 EGSFKLDQLDMFQVER 298 (366)
Q Consensus 283 ~gsf~i~~~e~~~~~~ 298 (366)
.| ++|.+-..+...+
T Consensus 158 ~~-i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 LG-IRIEERVFLDGGR 172 (193)
T ss_pred CC-CEEEEEEEEcCCC
Confidence 98 8886666655443
No 90
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.32 E-value=0.00097 Score=51.39 Aligned_cols=102 Identities=26% Similarity=0.312 Sum_probs=61.0
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEe
Q 017747 53 NIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIA 132 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 132 (366)
+|+|+|||.|.++..+.. .+..+++..|+..+-....-+.. ...+. ....++.
T Consensus 1 ~ildig~G~G~~~~~~~~-----------------~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~--~~~~~~~ 53 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----------------GPGARVTGVDISPVALELARKAA--------AALLA--DNVEVLK 53 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----------------CCCCEEEEEeCCHHHHHHHHHHH--------hcccc--cceEEEE
Confidence 589999999998764311 12378888898654333222100 00000 1112222
Q ss_pred ccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 133 GYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSE 211 (366)
Q Consensus 133 ~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 211 (366)
+++.+.. .+.+++|+++.+..+++. + .+...+++.-.+
T Consensus 54 ---~~~~~~~~~~~~~~d~i~~~~~~~~~---~-----------------------------------~~~~~~l~~~~~ 92 (107)
T cd02440 54 ---GDAEELPPEADESFDVIISDPPLHHL---V-----------------------------------EDLARFLEEARR 92 (107)
T ss_pred ---cChhhhccccCCceEEEEEccceeeh---h-----------------------------------hHHHHHHHHHHH
Confidence 3443333 367789999999998886 0 133445666677
Q ss_pred HhccCceEEEE
Q 017747 212 ELVVGGRMVLI 222 (366)
Q Consensus 212 EL~~GG~lvl~ 222 (366)
-|+|||.++++
T Consensus 93 ~l~~~g~~~~~ 103 (107)
T cd02440 93 LLKPGGVLVLT 103 (107)
T ss_pred HcCCCCEEEEE
Confidence 88999999986
No 91
>PTZ00146 fibrillarin; Provisional
Probab=97.32 E-value=0.0026 Score=61.55 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecC
Q 017747 18 YARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLND 97 (366)
Q Consensus 18 Y~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nD 97 (366)
|-.=.+.+.+++..++-=|+ .+. ...-.+|||+|||+|..|..+.+.+ + ++-.||..|
T Consensus 107 yR~w~p~rSKlaa~i~~g~~----~l~---IkpG~~VLDLGaG~G~~t~~lAdiV------------G---~~G~VyAVD 164 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA----NIP---IKPGSKVLYLGAASGTTVSHVSDLV------------G---PEGVVYAVE 164 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc----eec---cCCCCEEEEeCCcCCHHHHHHHHHh------------C---CCCEEEEEE
Confidence 55555566555544322122 111 1234799999999999887543322 1 235788888
Q ss_pred CCC
Q 017747 98 LPT 100 (366)
Q Consensus 98 Lp~ 100 (366)
+..
T Consensus 165 ~s~ 167 (293)
T PTZ00146 165 FSH 167 (293)
T ss_pred CcH
Confidence 654
No 92
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.28 E-value=0.00056 Score=62.91 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=48.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
++..+|||+|||.+..+.. +. ....|.--||-.. .+.
T Consensus 71 ~~~~viaD~GCGdA~la~~--------~~-----------~~~~V~SfDLva~------------------------n~~ 107 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKA--------VP-----------NKHKVHSFDLVAP------------------------NPR 107 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---------------------S---EEEEESS-S------------------------STT
T ss_pred CCCEEEEECCCchHHHHHh--------cc-----------cCceEEEeeccCC------------------------CCC
Confidence 5568999999999997732 21 1267777788532 112
Q ss_pred eEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 129 ~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
+-++ +--.-.++++|+|+++-+.+|.= .||..||.-
T Consensus 108 Vtac----dia~vPL~~~svDv~VfcLSLMG----------------------------------------Tn~~~fi~E 143 (219)
T PF05148_consen 108 VTAC----DIANVPLEDESVDVAVFCLSLMG----------------------------------------TNWPDFIRE 143 (219)
T ss_dssp EEES-----TTS-S--TT-EEEEEEES---S----------------------------------------S-HHHHHHH
T ss_pred EEEe----cCccCcCCCCceeEEEEEhhhhC----------------------------------------CCcHHHHHH
Confidence 2222 22234479999999998887642 267778888
Q ss_pred HHHHhccCceEEEE
Q 017747 209 RSEELVVGGRMVLI 222 (366)
Q Consensus 209 Ra~EL~~GG~lvl~ 222 (366)
=.|-|||||.|.+.
T Consensus 144 A~RvLK~~G~L~IA 157 (219)
T PF05148_consen 144 ANRVLKPGGILKIA 157 (219)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHheeccCcEEEEE
Confidence 89999999999987
No 93
>PRK04266 fibrillarin; Provisional
Probab=97.26 E-value=0.0015 Score=61.02 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=25.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCC
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTN 101 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~N 101 (366)
..+|+|+|||+|..|..+.+.+ +.-.|+.-|+...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v----------------~~g~V~avD~~~~ 107 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV----------------EEGVVYAVEFAPR 107 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc----------------CCCeEEEEECCHH
Confidence 4799999999999987532211 1257888898754
No 94
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00065 Score=64.22 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+..-+|+|+|||+|..++++ .++ .+..++...++-.-......+++.- +++ ..+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~l--------a~r--------~~~a~I~~VEiq~~~a~~A~~nv~l--------n~l--~~r 96 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLL--------AQR--------TEKAKIVGVEIQEEAAEMAQRNVAL--------NPL--EER 96 (248)
T ss_pred ccCCeEEEecCCcCHHHHHH--------hcc--------CCCCcEEEEEeCHHHHHHHHHHHHh--------Ccc--hhc
Confidence 34789999999999999863 222 1226666666654444444443321 111 112
Q ss_pred e-EEeccCCCc--ccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAGYPGSF--YGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 129 ~-f~~~vpgSF--y~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+ ++. .++ +.+..+..++|+++|+ |+.... ... ..+.+..+-.+-+..-++..+
T Consensus 97 i~v~~---~Di~~~~~~~~~~~fD~Ii~N---------PPyf~~---------~~~---~~~~~~~~~Ar~e~~~~le~~ 152 (248)
T COG4123 97 IQVIE---ADIKEFLKALVFASFDLIICN---------PPYFKQ---------GSR---LNENPLRAIARHEITLDLEDL 152 (248)
T ss_pred eeEeh---hhHHHhhhcccccccCEEEeC---------CCCCCC---------ccc---cCcChhhhhhhhhhcCCHHHH
Confidence 2 222 233 2334455589999986 665433 111 123346666777788899999
Q ss_pred HHHHHHHhccCceEEEEe
Q 017747 206 LRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~ 223 (366)
++.-++-|||||++.+..
T Consensus 153 i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 153 IRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHHccCCCEEEEEe
Confidence 999999999999999886
No 95
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.15 E-value=0.0019 Score=61.12 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCC
Q 017747 48 DPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSP 127 (366)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~ 127 (366)
.+..+.|+|+|||.+..+.. .+ -+|+--||-.- ..
T Consensus 178 r~~~~vIaD~GCGEakiA~~--------------------~~-~kV~SfDL~a~------------------------~~ 212 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIASS--------------------ER-HKVHSFDLVAV------------------------NE 212 (325)
T ss_pred CcCceEEEecccchhhhhhc--------------------cc-cceeeeeeecC------------------------CC
Confidence 36789999999999987630 11 45566676421 11
Q ss_pred ceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 128 SVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 128 ~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
.+-+| +.-+-.++++|+|+++.+.+|+= .||..|++
T Consensus 213 ~V~~c----Dm~~vPl~d~svDvaV~CLSLMg----------------------------------------tn~~df~k 248 (325)
T KOG3045|consen 213 RVIAC----DMRNVPLEDESVDVAVFCLSLMG----------------------------------------TNLADFIK 248 (325)
T ss_pred ceeec----cccCCcCccCcccEEEeeHhhhc----------------------------------------ccHHHHHH
Confidence 33333 33344589999999987776642 36777888
Q ss_pred HHHHHhccCceEEEEee
Q 017747 208 SRSEELVVGGRMVLILL 224 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~~ 224 (366)
--.+-|+|||.+.+.=+
T Consensus 249 Ea~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 249 EANRILKPGGLLYIAEV 265 (325)
T ss_pred HHHHHhccCceEEEEeh
Confidence 88999999999998843
No 96
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.14 E-value=0.00059 Score=63.89 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=86.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
-.+|+|+|||-|..|.. +.+. | ..|+..|+..- ..+ +.+.+...+.-.+
T Consensus 60 g~~vLDvGCGgG~Lse~--------mAr~-----G-----a~VtgiD~se~-----------~I~-~Ak~ha~e~gv~i~ 109 (243)
T COG2227 60 GLRVLDVGCGGGILSEP--------LARL-----G-----ASVTGIDASEK-----------PIE-VAKLHALESGVNID 109 (243)
T ss_pred CCeEEEecCCccHhhHH--------HHHC-----C-----CeeEEecCChH-----------HHH-HHHHhhhhcccccc
Confidence 48999999999977753 3331 2 89999998641 111 1111000000010
Q ss_pred EEeccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|..+ .- +.| ...+++|++.|.-.++-+.+ | ..|++.
T Consensus 110 y~~~---~~-edl~~~~~~FDvV~cmEVlEHv~d-p--------------------------------------~~~~~~ 146 (243)
T COG2227 110 YRQA---TV-EDLASAGGQFDVVTCMEVLEHVPD-P--------------------------------------ESFLRA 146 (243)
T ss_pred chhh---hH-HHHHhcCCCccEEEEhhHHHccCC-H--------------------------------------HHHHHH
Confidence 2221 11 344 44489999998766665433 1 237889
Q ss_pred HHHHhccCceEEEEeecCCCCCCCCCCchhHH--HHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCce
Q 017747 209 RSEELVVGGRMVLILLGRIGPDHVDRGNSFFW--ELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSF 286 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~--~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf 286 (366)
+++=+||||.|+++.+-|.-- .++. -..+-.++ ++-.|.-+-+ -|-.++|+...+...| |
T Consensus 147 c~~lvkP~G~lf~STinrt~k-------a~~~~i~~ae~vl~-~vP~gTH~~~---------k~irp~El~~~~~~~~-~ 208 (243)
T COG2227 147 CAKLVKPGGILFLSTINRTLK-------AYLLAIIGAEYVLR-IVPKGTHDYR---------KFIKPAELIRWLLGAN-L 208 (243)
T ss_pred HHHHcCCCcEEEEeccccCHH-------HHHHHHHHHHHHHH-hcCCcchhHH---------HhcCHHHHHHhcccCC-c
Confidence 999999999999999876431 1211 11223333 4444421111 1456788888888776 6
Q ss_pred EEeeEEE
Q 017747 287 KLDQLDM 293 (366)
Q Consensus 287 ~i~~~e~ 293 (366)
++.+..-
T Consensus 209 ~~~~~~g 215 (243)
T COG2227 209 KIIDRKG 215 (243)
T ss_pred eEEeecc
Confidence 6655543
No 97
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.10 E-value=0.0015 Score=66.83 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=76.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV- 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~- 129 (366)
..+|+|+|||+|.-|..+. +.. .+..+|+.+|+..+....+-+.+. . .| ..++
T Consensus 238 g~~VLD~cagpGgkt~~la--------~~~-------~~~g~V~a~Dis~~rl~~~~~n~~-------r-~g---~~~v~ 291 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------ELM-------KDQGKILAVDISREKIQLVEKHAK-------R-LK---LSSIE 291 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc-------CCCCEEEEEECCHHHHHHHHHHHH-------H-cC---CCeEE
Confidence 4689999999999998532 221 123789999997654333322221 1 11 1222
Q ss_pred EEeccCCCccccc-CCCCcccEEEc---ccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNNSLHFIHS---SNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~s~~~~~S---~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+..+ +...-. +.++++|.++. ++.+..+.+.|..... .+ +.-..+..+.-..+
T Consensus 292 ~~~~---Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~-----~~~~~~l~~~Q~~i 348 (431)
T PRK14903 292 IKIA---DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VN-----KEDFKKLSEIQLRI 348 (431)
T ss_pred EEEC---chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CC-----HHHHHHHHHHHHHH
Confidence 3332 321111 23568999985 3455666655543211 01 11224455666788
Q ss_pred HHHHHHHhccCceEEEEeecCCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~~ 228 (366)
|..-++-|+|||+|+.++.....
T Consensus 349 L~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 349 VSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHhcCCCCEEEEEECCCCh
Confidence 99999999999999999876543
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.08 E-value=0.0019 Score=63.11 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=42.9
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-E
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV-Y 130 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~-f 130 (366)
.+|+|+|||+|..++.+ .+. .|..+++..|+...-....-+.+. ..+. ..++ |
T Consensus 135 ~~VLDlG~GsG~iai~l--------a~~--------~p~~~V~avDis~~al~~A~~n~~--------~~~l--~~~i~~ 188 (307)
T PRK11805 135 TRILDLCTGSGCIAIAC--------AYA--------FPDAEVDAVDISPDALAVAEINIE--------RHGL--EDRVTL 188 (307)
T ss_pred CEEEEEechhhHHHHHH--------HHH--------CCCCEEEEEeCCHHHHHHHHHHHH--------HhCC--CCcEEE
Confidence 68999999999988752 222 244889999986532222221111 1111 1122 3
Q ss_pred EeccCCCcccccCCCCcccEEEcc
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSS 154 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~ 154 (366)
+. +++.+. +|++++|+++|+
T Consensus 189 ~~---~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 189 IE---SDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred EE---Cchhhh-CCCCCccEEEEC
Confidence 33 466554 366789999996
No 99
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.02 E-value=0.0031 Score=64.69 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=72.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc-e
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS-V 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~ 129 (366)
..+|+|+|||+|..|..+...+ ....+|+..|+.......+-+.+.. .| ..+ .
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~---------------~~~~~V~avD~s~~~l~~~~~~~~~--------~g---~~~v~ 304 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM---------------QNRGQITAVDRYPQKLEKIRSHASA--------LG---ITIIE 304 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh---------------CCCcEEEEEECCHHHHHHHHHHHHH--------hC---CCeEE
Confidence 4789999999999997532221 1125899999977554444332221 11 122 2
Q ss_pred EEeccCCCcccccCCCCcccEEEc----ccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHS----SNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S----~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
++. ++. ..+.|++++|.++. +.+-+|-. -|..... .++..+ .+..+.-..+
T Consensus 305 ~~~---~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~r-~p~~~~~---------------~~~~~~-----~~l~~~q~~i 359 (445)
T PRK14904 305 TIE---GDA-RSFSPEEQPDAILLDAPCTGTGVLGR-RAELRWK---------------LTPEKL-----AELVGLQAEL 359 (445)
T ss_pred EEe---Ccc-cccccCCCCCEEEEcCCCCCcchhhc-Ccchhhc---------------CCHHHH-----HHHHHHHHHH
Confidence 333 333 23346778999983 22223322 2322110 011111 2334556678
Q ss_pred HHHHHHHhccCceEEEEeecCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
|..-++-|+|||+|+.+++.-.
T Consensus 360 L~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCCC
Confidence 9999999999999999886654
No 100
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.01 E-value=0.0037 Score=63.67 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=74.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|.-|..+...+ + ..+++..|...+....+-+.+. . .| .. +-
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~-~~~v~a~D~~~~~l~~~~~n~~-------r-~g---~~-~~ 290 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------P-QAQVVALDIHEHRLKRVYENLK-------R-LG---LT-IK 290 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------C-CCeEEEEeCCHHHHHHHHHHHH-------H-cC---CC-eE
Confidence 4799999999999998532211 1 3689999997654444433222 1 11 11 22
Q ss_pred EeccCCCccccc--CCCCcccEEEc---ccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRL--FPNNSLHFIHS---SNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 131 ~~~vpgSFy~~l--fp~~s~~~~~S---~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+..+.++..+-. .+.+++|.++. ++++.-+.+.|+.... .++..+ .+..+.-..+
T Consensus 291 v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~---------------~~~~~~-----~~l~~lQ~~l 350 (426)
T TIGR00563 291 AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL---------------RKPRDI-----AELAELQSEI 350 (426)
T ss_pred EEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhc---------------CCHHHH-----HHHHHHHHHH
Confidence 222223332222 25678999985 3444445555543211 011112 2334455677
Q ss_pred HHHHHHHhccCceEEEEeecCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
|..=++-|+|||+||.+++.-.
T Consensus 351 L~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 351 LDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHHHHHhcCCCcEEEEEeCCCC
Confidence 8888889999999999986654
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.99 E-value=0.0028 Score=64.59 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|.-|+.+.+.. +...|+..|+.......+-+.+. . .| ....+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~----------------~~~~v~a~D~s~~~l~~~~~n~~-------~-~g---~~~~~ 297 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA----------------PQAQVVALDIDAQRLERVRENLQ-------R-LG---LKATV 297 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc----------------CCCEEEEEeCCHHHHHHHHHHHH-------H-cC---CCeEE
Confidence 4789999999999987532211 12678999986643333322221 1 11 11223
Q ss_pred EeccCCCccc--ccCCCCcccEEEcc---cccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYG--RLFPNNSLHFIHSS---NSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 131 ~~~vpgSFy~--~lfp~~s~~~~~S~---~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+. ++..+ ..++++++|.+++. +...-+.+-|..... ..++ -...+.+....+
T Consensus 298 ~~---~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~----------------~~~~----~l~~l~~~q~~i 354 (427)
T PRK10901 298 IV---GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWL----------------RRPE----DIAALAALQSEI 354 (427)
T ss_pred EE---cCcccchhhcccCCCCEEEECCCCCcccccccCcccccc----------------CCHH----HHHHHHHHHHHH
Confidence 33 33322 22456789999842 122112222332110 0011 112344556778
Q ss_pred HHHHHHHhccCceEEEEeecC
Q 017747 206 LRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~ 226 (366)
|..-.+-|+|||+|+.++..-
T Consensus 355 L~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 355 LDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 888889999999999887533
No 102
>PRK00811 spermidine synthase; Provisional
Probab=96.87 E-value=0.0027 Score=61.22 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+++.+|+|+|||+|..+..+ + ++ ++.-+|...|+-..--...-+.++.+..... . .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~-------l-~~--------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~-----~-d~r 132 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREV-------L-KH--------PSVEKITLVEIDERVVEVCRKYLPEIAGGAY-----D-DPR 132 (283)
T ss_pred CCCCEEEEEecCchHHHHHH-------H-cC--------CCCCEEEEEeCCHHHHHHHHHHhHHhccccc-----c-CCc
Confidence 56789999999999987542 1 11 1225788888865433333222221111000 0 223
Q ss_pred e-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 129 ~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
+ ++.+-+..|-.. +++++|++++..+-+|. |. .+.|. ..|++
T Consensus 133 v~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~~---~~-------------------------~~l~t-------~ef~~ 175 (283)
T PRK00811 133 VELVIGDGIKFVAE--TENSFDVIIVDSTDPVG---PA-------------------------EGLFT-------KEFYE 175 (283)
T ss_pred eEEEECchHHHHhh--CCCcccEEEECCCCCCC---ch-------------------------hhhhH-------HHHHH
Confidence 3 444443344333 57789999987654441 10 01121 36677
Q ss_pred HHHHHhccCceEEEEe
Q 017747 208 SRSEELVVGGRMVLIL 223 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~ 223 (366)
...+-|+|||.|++..
T Consensus 176 ~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 176 NCKRALKEDGIFVAQS 191 (283)
T ss_pred HHHHhcCCCcEEEEeC
Confidence 7889999999998753
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=96.84 E-value=0.0034 Score=60.27 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=68.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..++.+ .++ .+..+|+..|+........-+.++ ..-+
T Consensus 65 ~grVLDLGcGsGilsl~l--------a~r--------~~~~~V~gVDisp~al~~Ar~n~~---------------~v~~ 113 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCM--------LHR--------CKPEKIVCVELNPEFARIGKRLLP---------------EAEW 113 (279)
T ss_pred CCeEEEcCCCCCHHHHHH--------HHh--------CCCCEEEEEECCHHHHHHHHHhCc---------------CCEE
Confidence 368999999999877642 221 122789999986532221111111 1122
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHH----HHH--HHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQ----FQE--DFTL 204 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q----~~~--D~~~ 204 (366)
+. +++.+ +.+..++|+++|+-.++++.... .. +.|+-+ ..+ .+..
T Consensus 114 v~---~D~~e-~~~~~kFDlIIsNPPF~~l~~~d--~~-----------------------~~~~~~GG~~g~~~l~~~~ 164 (279)
T PHA03411 114 IT---SDVFE-FESNEKFDVVISNPPFGKINTTD--TK-----------------------DVFEYTGGEFEFKVMTLGQ 164 (279)
T ss_pred EE---Cchhh-hcccCCCcEEEEcCCccccCchh--hh-----------------------hhhhhccCccccccccHHH
Confidence 33 45543 33467899999999998854211 10 111110 001 2578
Q ss_pred HHHHHHHHhccCceEEEEeecC
Q 017747 205 FLRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 205 FL~~Ra~EL~~GG~lvl~~~g~ 226 (366)
||+..+.-|+|+|...+..-|+
T Consensus 165 ~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 165 KFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred HHhhhHheecCCceEEEEEecc
Confidence 8999999999999888775444
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.84 E-value=0.0049 Score=59.36 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=65.1
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
.+|+|+|||+|..++.+ ... .|..+++..|+...-....-+.+ . ..+.. ..-.|+
T Consensus 116 ~~vLDlG~GsG~i~l~l--------a~~--------~~~~~v~avDis~~al~~a~~n~-------~-~~~~~-~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGCIALAL--------AYE--------FPNAEVIAVDISPDALAVAEENA-------E-KNQLE-HRVEFI 170 (284)
T ss_pred CEEEEEeccHhHHHHHH--------HHH--------CCCCEEEEEECCHHHHHHHHHHH-------H-HcCCC-CcEEEE
Confidence 68999999999887742 221 23478999998643222211111 1 11110 011233
Q ss_pred eccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSE 211 (366)
Q Consensus 132 ~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 211 (366)
. +++++. ++++++|+++|+--..--+..+. . + .+.- -.|..+.-. -.-.-.+...|+..-.+
T Consensus 171 ~---~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~---------~-~-~~~~--~eP~~AL~g-g~dgl~~~~~ii~~a~~ 232 (284)
T TIGR00536 171 Q---SNLFEP-LAGQKIDIIVSNPPYIDEEDLAD---------L-P-NVVR--FEPLLALVG-GDDGLNILRQIIELAPD 232 (284)
T ss_pred E---Cchhcc-CcCCCccEEEECCCCCCcchhhc---------C-C-cccc--cCcHHHhcC-CCcHHHHHHHHHHHHHH
Confidence 3 466554 45568999998622111110000 0 0 0000 000000000 00012466778888889
Q ss_pred HhccCceEEEEee
Q 017747 212 ELVVGGRMVLILL 224 (366)
Q Consensus 212 EL~~GG~lvl~~~ 224 (366)
-|+|||.+++...
T Consensus 233 ~L~~gG~l~~e~g 245 (284)
T TIGR00536 233 YLKPNGFLVCEIG 245 (284)
T ss_pred hccCCCEEEEEEC
Confidence 9999999998873
No 105
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.82 E-value=0.0058 Score=62.60 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=67.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..|+.+.... .+.-+++..|+..+.-..+-+.+. . .| ..++
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~---------------~~~~~v~avDi~~~~l~~~~~n~~-------~-~g---~~~v- 303 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL---------------KNTGKVVALDIHEHKLKLIEENAK-------R-LG---LTNI- 303 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh---------------CCCCEEEEEeCCHHHHHHHHHHHH-------H-cC---CCeE-
Confidence 4689999999999998532221 123689999996543333322211 1 11 1222
Q ss_pred EeccCCCcccc--cCCCCcccEEEcc---cccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGR--LFPNNSLHFIHSS---NSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 131 ~~~vpgSFy~~--lfp~~s~~~~~S~---~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
..+-+++.+- .++ +++|++++. +....+++.|..... + ++..+ ....+--..+
T Consensus 304 -~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~-------~--------~~~~~-----~~l~~~q~~i 361 (444)
T PRK14902 304 -ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYN-------K--------TKEDI-----ESLQEIQLEI 361 (444)
T ss_pred -EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhc-------C--------CHHHH-----HHHHHHHHHH
Confidence 1222344321 133 789999864 223333333332111 0 11111 1223334567
Q ss_pred HHHHHHHhccCceEEEEeecC
Q 017747 206 LRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~ 226 (366)
|..-.+-|+|||+||.++..-
T Consensus 362 L~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 362 LESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHcCCCCEEEEEcCCC
Confidence 888889999999999776433
No 106
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.80 E-value=0.024 Score=55.85 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=103.4
Q ss_pred cCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCC
Q 017747 9 MAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPA 88 (366)
Q Consensus 9 M~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~ 88 (366)
|.||-+..+|.-+-.+|+.....-....++. .+.+.. ....-..+|.|-|.|..+-.+++ + .
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~i-l~~~~G-f~~v~~avDvGgGiG~v~k~ll~--------~--------f 199 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMSFLSTLVMKKI-LEVYTG-FKGVNVAVDVGGGIGRVLKNLLS--------K--------Y 199 (342)
T ss_pred hhhhhcccccccHHHHHHHHHHHHHHHHHhh-hhhhcc-cccCceEEEcCCcHhHHHHHHHH--------h--------C
Confidence 4566566555444445444332222222222 222211 23456789999999998865322 2 4
Q ss_pred CcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCccc
Q 017747 89 PEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLY 168 (366)
Q Consensus 89 p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~ 168 (366)
|.+..+-=|+|.= -+.-+ ..+ +. +.-+.|+++.. .|++- ++|--+.||=+ +
T Consensus 200 p~ik~infdlp~v-----~~~a~--------~~~----~g--V~~v~gdmfq~-~P~~d--aI~mkWiLhdw-------t 250 (342)
T KOG3178|consen 200 PHIKGINFDLPFV-----LAAAP--------YLA----PG--VEHVAGDMFQD-TPKGD--AIWMKWILHDW-------T 250 (342)
T ss_pred CCCceeecCHHHH-----Hhhhh--------hhc----CC--cceeccccccc-CCCcC--eEEEEeecccC-------C
Confidence 5588877777631 11000 000 01 33466888888 78776 66655555432 2
Q ss_pred ccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCC---CCCchhHHHHHHH
Q 017747 169 NEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHV---DRGNSFFWELLSR 245 (366)
Q Consensus 169 ~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~---~~~~~~~~~~l~~ 245 (366)
| +|...||+++++-|+|||.+++.=.-.+.+... ........+.+..
T Consensus 251 D------------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~ 300 (342)
T KOG3178|consen 251 D------------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLML 300 (342)
T ss_pred h------------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHH
Confidence 2 689999999999999999999874422221111 0111112333333
Q ss_pred HHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEe
Q 017747 246 SLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLD 289 (366)
Q Consensus 246 al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~ 289 (366)
+..+ -| --++.+|++..+.++| |.+-
T Consensus 301 ~~~~---~G--------------kert~~e~q~l~~~~g-F~~~ 326 (342)
T KOG3178|consen 301 TQTS---GG--------------KERTLKEFQALLPEEG-FPVC 326 (342)
T ss_pred HHhc---cc--------------eeccHHHHHhcchhhc-Ccee
Confidence 3221 13 3478999999999998 7663
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.79 E-value=0.0015 Score=63.20 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=24.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCC
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTN 101 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~N 101 (366)
..+|+|+|||+|..++. +.+. | . -+|+..|+...
T Consensus 160 g~~VLDvGcGsG~lai~--------aa~~-----g---~-~~V~avDid~~ 193 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIA--------ALKL-----G---A-AKVVGIDIDPL 193 (288)
T ss_pred CCEEEEeCCChhHHHHH--------HHHc-----C---C-CeEEEEECCHH
Confidence 47999999999998764 2121 2 1 47889998654
No 108
>PRK14968 putative methyltransferase; Provisional
Probab=96.72 E-value=0.0057 Score=54.17 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=65.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCC-ce
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSP-SV 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~-~~ 129 (366)
..+|+|+|||+|..++.+ .++ ..+++..|...+....+-+.+. . .+.+ .. ..
T Consensus 24 ~~~vLd~G~G~G~~~~~l--------~~~----------~~~v~~~D~s~~~~~~a~~~~~-------~-~~~~-~~~~~ 76 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVA--------AKN----------GKKVVGVDINPYAVECAKCNAK-------L-NNIR-NNGVE 76 (188)
T ss_pred CCEEEEEccccCHHHHHH--------Hhh----------cceEEEEECCHHHHHHHHHHHH-------H-cCCC-CcceE
Confidence 468999999999987642 111 1678888886543333322211 1 1111 11 12
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
++ .+++.+. ++++++|+++++..+.+-. |..... ..++. .+..... .......|++.-
T Consensus 77 ~~---~~d~~~~-~~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~~--~~~~~~~-----------~~~~~~~~i~~~ 134 (188)
T PRK14968 77 VI---RSDLFEP-FRGDKFDVILFNPPYLPTE--EEEEWD---DWLNY--ALSGGKD-----------GREVIDRFLDEV 134 (188)
T ss_pred EE---ecccccc-ccccCceEEEECCCcCCCC--chhhhh---hhhhh--hhccCcC-----------hHHHHHHHHHHH
Confidence 22 2455554 4566899999875543311 111000 00000 0000000 123456788899
Q ss_pred HHHhccCceEEEEe
Q 017747 210 SEELVVGGRMVLIL 223 (366)
Q Consensus 210 a~EL~~GG~lvl~~ 223 (366)
.+-|+|||.+++..
T Consensus 135 ~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 135 GRYLKPGGRILLLQ 148 (188)
T ss_pred HHhcCCCeEEEEEE
Confidence 99999999998875
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.70 E-value=0.0036 Score=61.85 Aligned_cols=118 Identities=18% Similarity=0.281 Sum_probs=65.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCC-C---C
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGG-G---S 125 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~-~---~ 125 (366)
...+|||||||-|.-.. +|.. ..+ -.++..|+...--.....+. ..+.+.... . +
T Consensus 62 ~~~~VLDl~CGkGGDL~------------Kw~~----~~i-~~~vg~Dis~~si~ea~~Ry----~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQ------------KWQK----AKI-KHYVGIDISEESIEEARERY----KQLKKRNNSKQYRFD 120 (331)
T ss_dssp TT-EEEEET-TTTTTHH------------HHHH----TT--SEEEEEES-HHHHHHHHHHH----HHHHTSTT-HTSEEC
T ss_pred CCCeEEEecCCCchhHH------------HHHh----cCC-CEEEEEeCCHHHHHHHHHHH----HHhcccccccccccc
Confidence 56999999999999743 2222 122 66788898643222222111 001110000 0 0
Q ss_pred CCceEEeccCCCcc---cccCCCC--cccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHH
Q 017747 126 SPSVYIAGYPGSFY---GRLFPNN--SLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQE 200 (366)
Q Consensus 126 ~~~~f~~~vpgSFy---~~lfp~~--s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~ 200 (366)
+...|+.+ -.|- ...+++. .+|++-+-.|||..=.- ++
T Consensus 121 f~a~f~~~--D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes-----------------------------------e~ 163 (331)
T PF03291_consen 121 FIAEFIAA--DCFSESLREKLPPRSRKFDVVSCQFALHYAFES-----------------------------------EE 163 (331)
T ss_dssp CEEEEEES--TTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS-----------------------------------HH
T ss_pred chhheecc--ccccchhhhhccccCCCcceeehHHHHHHhcCC-----------------------------------HH
Confidence 22233333 1222 2345555 99999999999996441 23
Q ss_pred HHHHHHHHHHHHhccCceEEEEeec
Q 017747 201 DFTLFLRSRSEELVVGGRMVLILLG 225 (366)
Q Consensus 201 D~~~FL~~Ra~EL~~GG~lvl~~~g 225 (366)
-.+.||+.-++-|+|||.++.+++-
T Consensus 164 ~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 164 KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 3467899999999999999999873
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.70 E-value=0.0064 Score=61.71 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=42.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..++.+ .+. .|..+++..|+........-+.. .. .+ .+-.|
T Consensus 252 ~~rVLDLGcGSG~IaiaL--------A~~--------~p~a~VtAVDiS~~ALe~AreNa-------~~-~g---~rV~f 304 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTV--------ALE--------RPDAFVRASDISPPALETARKNA-------AD-LG---ARVEF 304 (423)
T ss_pred CCEEEEEeChhhHHHHHH--------HHh--------CCCCEEEEEECCHHHHHHHHHHH-------HH-cC---CcEEE
Confidence 358999999999998742 221 24478999998643222221111 11 11 11123
Q ss_pred EeccCCCcccccCC-CCcccEEEcc
Q 017747 131 IAGYPGSFYGRLFP-NNSLHFIHSS 154 (366)
Q Consensus 131 ~~~vpgSFy~~lfp-~~s~~~~~S~ 154 (366)
+ -+++.+..+| .+++|+++|+
T Consensus 305 i---~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 305 A---HGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred E---EcchhccccccCCCccEEEEC
Confidence 3 3576665454 4589999996
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.70 E-value=0.0048 Score=58.45 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhccCceEEEEe
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
.++..|++.-.+-|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 566778888889999999999964
No 112
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0039 Score=59.74 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=83.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEec
Q 017747 17 SYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLN 96 (366)
Q Consensus 17 sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~n 96 (366)
-|++.+..=...-....|++.+.+.. .+....++|.|||.|.-+. ..|..-++..
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-----~~~gsv~~d~gCGngky~~--------------------~~p~~~~ig~ 71 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDS-----QPTGSVGLDVGCGNGKYLG--------------------VNPLCLIIGC 71 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhc-----cCCcceeeecccCCcccCc--------------------CCCcceeeec
Confidence 34444444222223345566665442 2446789999999999762 2344888999
Q ss_pred CCCCCchhHHHhhCchhHHHHhhhcCCCCCC-ceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCC
Q 017747 97 DLPTNDFNSVFKALPDFHRQLRNERGGGSSP-SVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESI 175 (366)
Q Consensus 97 DLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~-~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~ 175 (366)
|++.- +....++. .. .+.++ +..+-.+++.|+|...|...+||||.--.-
T Consensus 72 D~c~~-----------l~~~ak~~-----~~~~~~~a----d~l~~p~~~~s~d~~lsiavihhlsT~~RR--------- 122 (293)
T KOG1331|consen 72 DLCTG-----------LLGGAKRS-----GGDNVCRA----DALKLPFREESFDAALSIAVIHHLSTRERR--------- 122 (293)
T ss_pred chhhh-----------hccccccC-----CCceeehh----hhhcCCCCCCccccchhhhhhhhhhhHHHH---------
Confidence 98741 11111111 12 12222 345777899999999999999999873211
Q ss_pred ccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCC
Q 017747 176 NKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPD 230 (366)
Q Consensus 176 nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~ 230 (366)
..-|+--.++|+|||.+.+..-+.....
T Consensus 123 ---------------------------~~~l~e~~r~lrpgg~~lvyvwa~~q~~ 150 (293)
T KOG1331|consen 123 ---------------------------ERALEELLRVLRPGGNALVYVWALEQHQ 150 (293)
T ss_pred ---------------------------HHHHHHHHHHhcCCCceEEEEehhhccC
Confidence 1124555799999999999988876544
No 113
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.64 E-value=0.0019 Score=58.65 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=25.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
...+|+|+|||+|..++.+.... .+..+|+..|+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~---------------~~~~~v~avD~~~ 75 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV---------------GETGKVYAVDKDE 75 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh---------------CCCCEEEEEECCH
Confidence 45799999999999887521111 2336899999854
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=96.64 E-value=0.014 Score=56.74 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
.+-+|||+|||.|+.|...+.. . -.|.-+++.-|...- -+.+.+.+- ....+.. ..-.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa------~--------~~p~~~~~giD~d~~-ai~~Ar~~~------~~~~gL~-~rV~ 180 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK------H--------HLPTTSFHNFDIDPS-ANDVARRLV------SSDPDLS-KRMF 180 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH------h--------cCCCCEEEEEeCCHH-HHHHHHHHh------hhccCcc-CCcE
Confidence 5789999999999887643211 1 134568888888542 222222111 0001111 1223
Q ss_pred EEeccCCCcccccCC-CCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFP-NNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~lfp-~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|..+ +-.+ +.+ .+.+|++|+. ++|-.++.++ ...|..
T Consensus 181 F~~~---Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k-------------------------------------~~vL~~ 218 (296)
T PLN03075 181 FHTA---DVMD-VTESLKEYDVVFLA-ALVGMDKEEK-------------------------------------VKVIEH 218 (296)
T ss_pred EEEC---chhh-cccccCCcCEEEEe-cccccccccH-------------------------------------HHHHHH
Confidence 5543 2222 232 4689999999 7666543211 122556
Q ss_pred HHHHhccCceEEEEe
Q 017747 209 RSEELVVGGRMVLIL 223 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~ 223 (366)
-++-|+|||.+++-+
T Consensus 219 l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 219 LGKHMAPGALLMLRS 233 (296)
T ss_pred HHHhcCCCcEEEEec
Confidence 689999999999986
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.62 E-value=0.0063 Score=49.69 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=62.6
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
.+|+|+|||+|..++.+ .+. + ..+++..|+-.---....+.++ . .+.. .+.-++
T Consensus 2 ~~vlD~~~G~G~~~~~~--------~~~-----~----~~~~~gvdi~~~~~~~a~~~~~-------~-~~~~-~~~~~~ 55 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAA--------LRR-----G----AARVTGVDIDPEAVELARRNLP-------R-NGLD-DRVEVI 55 (117)
T ss_dssp EEEEEETSTTCHHHHHH--------HHH-----C----TCEEEEEESSHHHHHHHHHHCH-------H-CTTT-TTEEEE
T ss_pred CEEEEcCcchHHHHHHH--------HHH-----C----CCeEEEEEECHHHHHHHHHHHH-------H-ccCC-ceEEEE
Confidence 58999999999987642 222 1 2788888884311111111111 1 1110 122334
Q ss_pred eccCCCccccc--CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSFYGRL--FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 132 ~~vpgSFy~~l--fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
. +++..-. ++++++|+++++-=.+.....+.. -.++...|++.-
T Consensus 56 ~---~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~-------------------------------~~~~~~~~~~~~ 101 (117)
T PF13659_consen 56 V---GDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAA-------------------------------LRRLYSRFLEAA 101 (117)
T ss_dssp E---SHHHHHHHTCTTT-EEEEEE--STTSBTT-----------------------------------GGCHHHHHHHHH
T ss_pred E---CchhhchhhccCceeEEEEECCCCccccccchh-------------------------------hHHHHHHHHHHH
Confidence 4 3444333 788999999987433211110000 011667889999
Q ss_pred HHHhccCceEEEEee
Q 017747 210 SEELVVGGRMVLILL 224 (366)
Q Consensus 210 a~EL~~GG~lvl~~~ 224 (366)
.+-|+|||.+++.+.
T Consensus 102 ~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 102 ARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHcCCCeEEEEEeC
Confidence 999999999999864
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.61 E-value=0.0044 Score=64.60 Aligned_cols=130 Identities=12% Similarity=0.191 Sum_probs=66.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
+.+|+|+|||+|..++.+. .. .|..+++..|+........-+. .. ..+. ...+
T Consensus 139 ~~~VLDlG~GsG~iai~la--------~~--------~p~~~v~avDis~~al~~A~~N-------~~-~~~l--~~~v- 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--------CE--------LPNANVIATDISLDAIEVAKSN-------AI-KYEV--TDRI- 191 (506)
T ss_pred CCEEEEccCchhHHHHHHH--------HH--------CCCCeEEEEECCHHHHHHHHHH-------HH-HcCC--ccce-
Confidence 4689999999999887432 21 2347899999964322211111 11 1111 1122
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHH-HHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYF-KQFQEDFTLFLRSR 209 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~-~Q~~~D~~~FL~~R 209 (366)
..+-+++++. ++.+++|+++|+--....+..+....+ + ..-.| ..+.+. ..--..+..+++.-
T Consensus 192 -~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~----------v--~~~EP--~~AL~gg~dGl~~~~~il~~a 255 (506)
T PRK01544 192 -QIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE----------T--INYEP--SIALFAEEDGLQAYFIIAENA 255 (506)
T ss_pred -eeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCch----------h--hccCc--HHHhcCCccHHHHHHHHHHHH
Confidence 1233566553 366789999997433332221111000 0 00000 000010 00123456677777
Q ss_pred HHHhccCceEEEEe
Q 017747 210 SEELVVGGRMVLIL 223 (366)
Q Consensus 210 a~EL~~GG~lvl~~ 223 (366)
.+-|+|||++++..
T Consensus 256 ~~~L~~gG~l~lEi 269 (506)
T PRK01544 256 KQFLKPNGKIILEI 269 (506)
T ss_pred HHhccCCCEEEEEE
Confidence 88999999999864
No 117
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.52 E-value=0.0044 Score=56.58 Aligned_cols=113 Identities=25% Similarity=0.397 Sum_probs=66.3
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce-EE
Q 017747 53 NIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV-YI 131 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~-f~ 131 (366)
.++|+|||.|...+. +... .|+..++.-|.-.+ .+.+.+... .. .+ ..++ ++
T Consensus 20 l~lEIG~G~G~~l~~--------~A~~--------~Pd~n~iGiE~~~~---~v~~a~~~~----~~-~~---l~Nv~~~ 72 (195)
T PF02390_consen 20 LILEIGCGKGEFLIE--------LAKR--------NPDINFIGIEIRKK---RVAKALRKA----EK-RG---LKNVRFL 72 (195)
T ss_dssp EEEEET-TTSHHHHH--------HHHH--------STTSEEEEEES-HH---HHHHHHHHH----HH-HT---TSSEEEE
T ss_pred eEEEecCCCCHHHHH--------HHHH--------CCCCCEEEEecchH---HHHHHHHHH----Hh-hc---ccceEEE
Confidence 889999999998763 3222 46799999998543 332222211 11 11 3354 45
Q ss_pred eccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSE 211 (366)
Q Consensus 132 ~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~ 211 (366)
.+-...+...++|++|++-++-.+-=-|-.+-. .|-++ .+ ..||..-++
T Consensus 73 ~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----------~krRl----~~----------------~~fl~~~~~ 121 (195)
T PF02390_consen 73 RGDARELLRRLFPPGSVDRIYINFPDPWPKKRH-----------HKRRL----VN----------------PEFLELLAR 121 (195)
T ss_dssp ES-CTTHHHHHSTTTSEEEEEEES-----SGGG-----------GGGST----TS----------------HHHHHHHHH
T ss_pred EccHHHHHhhcccCCchheEEEeCCCCCcccch-----------hhhhc----CC----------------chHHHHHHH
Confidence 555566678889999999999887666622211 01111 01 246777789
Q ss_pred HhccCceEEEEe
Q 017747 212 ELVVGGRMVLIL 223 (366)
Q Consensus 212 EL~~GG~lvl~~ 223 (366)
-|+|||.+.+.+
T Consensus 122 ~L~~gG~l~~~T 133 (195)
T PF02390_consen 122 VLKPGGELYFAT 133 (195)
T ss_dssp HEEEEEEEEEEE
T ss_pred HcCCCCEEEEEe
Confidence 999999998875
No 118
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.49 E-value=0.013 Score=57.72 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=62.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|.|||+|..++. .. . ....++..|+-.......-+.+. ..|. .++
T Consensus 183 g~~vLDp~cGtG~~lie-------aa-~----------~~~~v~g~Di~~~~~~~a~~nl~--------~~g~---~~i- 232 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIE-------AG-L----------MGAKVIGCDIDWKMVAGARINLE--------HYGI---EDF- 232 (329)
T ss_pred cCEEEECCCCCCHHHHH-------HH-H----------hCCeEEEEcCCHHHHHHHHHHHH--------HhCC---CCC-
Confidence 46899999999976432 11 1 12678999985433322221111 1121 121
Q ss_pred EeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
..+-+++.+--++++++|++++.- |-+.... .++ .....-...+|+.-+
T Consensus 233 -~~~~~D~~~l~~~~~~~D~Iv~dP--------Pyg~~~~-----~~~-----------------~~~~~l~~~~l~~~~ 281 (329)
T TIGR01177 233 -FVKRGDATKLPLSSESVDAIATDP--------PYGRSTT-----AAG-----------------DGLESLYERSLEEFH 281 (329)
T ss_pred -eEEecchhcCCcccCCCCEEEECC--------CCcCccc-----ccC-----------------CchHHHHHHHHHHHH
Confidence 122346654345678999998852 2211100 000 001122456777778
Q ss_pred HHhccCceEEEEeecC
Q 017747 211 EELVVGGRMVLILLGR 226 (366)
Q Consensus 211 ~EL~~GG~lvl~~~g~ 226 (366)
+-|+|||++++.+...
T Consensus 282 r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 282 EVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHccCCcEEEEEEcCC
Confidence 9999999999998654
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.47 E-value=0.014 Score=59.62 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhccCceEEEEeecC
Q 017747 198 FQEDFTLFLRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 198 ~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~ 226 (366)
+.+.-..+|..-++-|+|||+||.++..-
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 44555788899999999999999887544
No 120
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.44 E-value=0.031 Score=50.65 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhc--CCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCC
Q 017747 34 HITLEALQQLYLEI--DPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLP 99 (366)
Q Consensus 34 ~~l~~ai~~l~~~~--~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp 99 (366)
|+-.+.|+.+.... ..+..+++|+|||||.-|+..+ . ..|.-++|.-|--
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a--------~--------~~p~~~v~AIe~~ 67 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA--------L--------AGPSGRVIAIERD 67 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH--------H--------hCCCceEEEEecC
Confidence 34445555443322 2234799999999999998532 1 1345888888864
No 121
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.41 E-value=0.0036 Score=59.13 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.5
Q ss_pred CceEEEeecCCCCcchH
Q 017747 50 KTINIADLGCSSGPNTL 66 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (366)
...+|+|+|||+|..++
T Consensus 119 ~~~~VLDiGcGsG~l~i 135 (250)
T PRK00517 119 PGKTVLDVGCGSGILAI 135 (250)
T ss_pred CCCEEEEeCCcHHHHHH
Confidence 45799999999998765
No 122
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.39 E-value=0.0054 Score=56.40 Aligned_cols=154 Identities=15% Similarity=0.097 Sum_probs=86.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCC--c
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSP--S 128 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~--~ 128 (366)
-.-++++|||||+|=-. + +..|.-.|++-|=..|+=.-+-+ +.+.+. .. .
T Consensus 77 K~~vLEvgcGtG~Nfkf------------y-----~~~p~~svt~lDpn~~mee~~~k-------s~~E~k----~~~~~ 128 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF------------Y-----PWKPINSVTCLDPNEKMEEIADK-------SAAEKK----PLQVE 128 (252)
T ss_pred ccceEEecccCCCCccc------------c-----cCCCCceEEEeCCcHHHHHHHHH-------HHhhcc----CcceE
Confidence 35679999999999521 1 12355778888865542111111 222211 22 2
Q ss_pred eEEeccCCCccccc--CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 129 VYIAGYPGSFYGRL--FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 129 ~f~~~vpgSFy~~l--fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
.|+.|-+ +++ +|+.|+|.++...+|.=..+ =..-|
T Consensus 129 ~fvva~g----e~l~~l~d~s~DtVV~TlvLCSve~---------------------------------------~~k~L 165 (252)
T KOG4300|consen 129 RFVVADG----ENLPQLADGSYDTVVCTLVLCSVED---------------------------------------PVKQL 165 (252)
T ss_pred EEEeech----hcCcccccCCeeeEEEEEEEeccCC---------------------------------------HHHHH
Confidence 4677654 444 39999999998876632111 12235
Q ss_pred HHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCce
Q 017747 207 RSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSF 286 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf 286 (366)
+.-.+-|+|||++++.=-|+...+ -...+|+...+-+..+...| +.=..|.-+.++++. |
T Consensus 166 ~e~~rlLRpgG~iifiEHva~~y~----~~n~i~q~v~ep~~~~~~dG---------------C~ltrd~~e~Leda~-f 225 (252)
T KOG4300|consen 166 NEVRRLLRPGGRIIFIEHVAGEYG----FWNRILQQVAEPLWHLESDG---------------CVLTRDTGELLEDAE-F 225 (252)
T ss_pred HHHHHhcCCCcEEEEEecccccch----HHHHHHHHHhchhhheeccc---------------eEEehhHHHHhhhcc-c
Confidence 566899999999999977775431 11223332222222222223 222345556677664 7
Q ss_pred EEeeEEEEe
Q 017747 287 KLDQLDMFQ 295 (366)
Q Consensus 287 ~i~~~e~~~ 295 (366)
++...+.+.
T Consensus 226 ~~~~~kr~~ 234 (252)
T KOG4300|consen 226 SIDSCKRFN 234 (252)
T ss_pred ccchhhccc
Confidence 777666554
No 123
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.39 E-value=0.014 Score=55.57 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEeecC
Q 017747 197 QFQEDFTLFLRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 197 Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~ 226 (366)
+..+.-..+|+.=++-|+|||+||.++...
T Consensus 173 ~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 173 EISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 344455668888899999999999887544
No 124
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.019 Score=55.63 Aligned_cols=106 Identities=19% Similarity=0.328 Sum_probs=61.7
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc--e
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS--V 129 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~--~ 129 (366)
.+|||+|||-|..++. +.+. .|..++.+.|. |+-.+-. -+..++.+. ..+ +
T Consensus 160 ~~vlDlGCG~Gvlg~~--------la~~--------~p~~~vtmvDv---n~~Av~~----ar~Nl~~N~----~~~~~v 212 (300)
T COG2813 160 GKVLDLGCGYGVLGLV--------LAKK--------SPQAKLTLVDV---NARAVES----ARKNLAANG----VENTEV 212 (300)
T ss_pred CcEEEeCCCccHHHHH--------HHHh--------CCCCeEEEEec---CHHHHHH----HHHhHHHcC----CCccEE
Confidence 4899999999999874 3332 45799999997 3333311 111122221 122 3
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
|.+ +-|+.+.. ++|+++|+ |+....+. +. ..+. .+++..=
T Consensus 213 ~~s----~~~~~v~~--kfd~IisN---------PPfh~G~~-------------v~-~~~~-----------~~~i~~A 252 (300)
T COG2813 213 WAS----NLYEPVEG--KFDLIISN---------PPFHAGKA-------------VV-HSLA-----------QEIIAAA 252 (300)
T ss_pred EEe----cccccccc--cccEEEeC---------CCccCCcc-------------hh-HHHH-----------HHHHHHH
Confidence 333 44666655 89999986 54332210 00 0111 1344455
Q ss_pred HHHhccCceEEEEee
Q 017747 210 SEELVVGGRMVLILL 224 (366)
Q Consensus 210 a~EL~~GG~lvl~~~ 224 (366)
.+-|++||.|.+..-
T Consensus 253 ~~~L~~gGeL~iVan 267 (300)
T COG2813 253 ARHLKPGGELWIVAN 267 (300)
T ss_pred HHhhccCCEEEEEEc
Confidence 788999999999875
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.25 E-value=0.012 Score=56.39 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+++.+|+|+|||+|..+..+ + +. .+.-++...|+..+-....-+.++...... . .++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~l-------l-~~--------~~~~~v~~veid~~vi~~a~~~~~~~~~~~------~-~~~ 127 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREV-------L-KH--------KSVEKATLVDIDEKVIELSKKFLPSLAGSY------D-DPR 127 (270)
T ss_pred CCCCEEEEEcCCchHHHHHH-------H-hC--------CCcceEEEEeCCHHHHHHHHHHhHhhcccc------c-CCc
Confidence 45679999999999966432 1 11 122567888886654443333332211000 0 112
Q ss_pred e-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 129 ~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
+ ++.+-+..|..+ .++++|++++..+-++-. +. ..|. ..|++
T Consensus 128 v~i~~~D~~~~l~~--~~~~yDvIi~D~~~~~~~--~~--------------------------~l~~-------~ef~~ 170 (270)
T TIGR00417 128 VDLQIDDGFKFLAD--TENTFDVIIVDSTDPVGP--AE--------------------------TLFT-------KEFYE 170 (270)
T ss_pred eEEEECchHHHHHh--CCCCccEEEEeCCCCCCc--cc--------------------------chhH-------HHHHH
Confidence 2 222322233333 257899998865433210 00 0111 35667
Q ss_pred HHHHHhccCceEEEE
Q 017747 208 SRSEELVVGGRMVLI 222 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~ 222 (366)
..++-|+|||++++.
T Consensus 171 ~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 171 LLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHhCCCcEEEEc
Confidence 778999999999987
No 126
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.23 E-value=0.0045 Score=57.34 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=56.6
Q ss_pred CceEEeccCCCcccccCCC-CcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 127 PSVYIAGYPGSFYGRLFPN-NSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 127 ~~~f~~~vpgSFy~~lfp~-~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
..+|.++. +..-|+ +..|++|.-+++..|.+ .||..|
T Consensus 106 ~~~~~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD-------------------------------------~dlv~f 143 (218)
T PF05891_consen 106 GEFYCVGL-----QDFTPEEGKYDLIWIQWCLGHLTD-------------------------------------EDLVAF 143 (218)
T ss_dssp EEEEES-G-----GG----TT-EEEEEEES-GGGS-H-------------------------------------HHHHHH
T ss_pred ceEEecCH-----hhccCCCCcEeEEEehHhhccCCH-------------------------------------HHHHHH
Confidence 35677764 444565 69999998777666543 699999
Q ss_pred HHHHHHHhccCceEEEE-eecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcC
Q 017747 206 LRSRSEELVVGGRMVLI-LLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREG 284 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~-~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~g 284 (366)
|+.+.+.|+|||.+|+= ....... ..++++ | -...||.+.++++++++|
T Consensus 144 L~RCk~~L~~~G~IvvKEN~~~~~~------------------------~~~D~~--D----sSvTRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 144 LKRCKQALKPNGVIVVKENVSSSGF------------------------DEFDEE--D----SSVTRSDEHFRELFKQAG 193 (218)
T ss_dssp HHHHHHHEEEEEEEEEEEEEESSSE------------------------EEEETT--T----TEEEEEHHHHHHHHHHCT
T ss_pred HHHHHHhCcCCcEEEEEecCCCCCC------------------------cccCCc--c----CeeecCHHHHHHHHHHcC
Confidence 99999999999988874 1111100 011111 1 124577899999999999
Q ss_pred ceEEeeEE
Q 017747 285 SFKLDQLD 292 (366)
Q Consensus 285 sf~i~~~e 292 (366)
+++.+-+
T Consensus 194 -l~~v~~~ 200 (218)
T PF05891_consen 194 -LRLVKEE 200 (218)
T ss_dssp --EEEEEE
T ss_pred -CEEEEec
Confidence 7775444
No 127
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.004 Score=60.43 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=24.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLP 99 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp 99 (366)
+..+++|+|||||-.++. ..+. |. ..++..|+-
T Consensus 162 ~g~~vlDvGcGSGILaIA--------a~kL-----GA----~~v~g~DiD 194 (300)
T COG2264 162 KGKTVLDVGCGSGILAIA--------AAKL-----GA----KKVVGVDID 194 (300)
T ss_pred CCCEEEEecCChhHHHHH--------HHHc-----CC----ceEEEecCC
Confidence 579999999999999974 2221 32 678888873
No 128
>PRK04457 spermidine synthase; Provisional
Probab=96.20 E-value=0.015 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCceEEEEeecCC
Q 017747 204 LFLRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 204 ~FL~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
.|++...+-|+|||++++++.+++
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 567788888999999999877654
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.13 E-value=0.0075 Score=59.36 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=16.0
Q ss_pred CceEEEeecCCCCcchHHH
Q 017747 50 KTINIADLGCSSGPNTLAI 68 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~ 68 (366)
+..+|+|+|||+|.+++.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~L 98 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVM 98 (322)
T ss_pred CCCEEEEEeCCccHHHHHH
Confidence 3479999999999999753
No 130
>PLN02366 spermidine synthase
Probab=96.04 E-value=0.022 Score=55.75 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+++-+|+++|||+|..... +.+. ++.-+|...|+...--....+.++.... +.. .++
T Consensus 90 ~~pkrVLiIGgG~G~~~re--------llk~--------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~------~~~-dpR 146 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLRE--------IARH--------SSVEQIDICEIDKMVIDVSKKFFPDLAV------GFD-DPR 146 (308)
T ss_pred CCCCeEEEEcCCccHHHHH--------HHhC--------CCCCeEEEEECCHHHHHHHHHhhhhhcc------ccC-CCc
Confidence 5688999999999996532 2221 2225677778765322222222222110 111 222
Q ss_pred e-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Q 017747 129 V-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLR 207 (366)
Q Consensus 129 ~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~ 207 (366)
+ ++.+-+..|.+. .|++++|++++-.+-+|- |. ...|. ..|++
T Consensus 147 v~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~---~~-------------------------~~L~t-------~ef~~ 190 (308)
T PLN02366 147 VNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVG---PA-------------------------QELFE-------KPFFE 190 (308)
T ss_pred eEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCC---ch-------------------------hhhhH-------HHHHH
Confidence 2 444433344333 256789999985544431 10 11111 35667
Q ss_pred HHHHHhccCceEEEEe
Q 017747 208 SRSEELVVGGRMVLIL 223 (366)
Q Consensus 208 ~Ra~EL~~GG~lvl~~ 223 (366)
...+-|+|||.|+...
T Consensus 191 ~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 191 SVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHhcCCCcEEEECc
Confidence 7788999999997653
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.92 E-value=0.058 Score=51.13 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccCceEEEEe
Q 017747 202 FTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 202 ~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
+..++..=.+-|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 4567777788999999999885
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.86 E-value=0.018 Score=53.28 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.6
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
-.+|+|+|||+|++|..
T Consensus 73 g~~VLeIGtGsGY~aAl 89 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAAL 89 (209)
T ss_dssp T-EEEEES-TTSHHHHH
T ss_pred CCEEEEecCCCcHHHHH
Confidence 48999999999999975
No 133
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.86 E-value=0.038 Score=54.05 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=72.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-.++|||||-|.-.+- +.. .. .-+++..|...---++.-++-.+..+.-++. - ++..|
T Consensus 118 ~~~~~~LgCGKGGDLlK------------w~k----Ag-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~---~-f~a~f 176 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLK------------WDK----AG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKF---I-FTAVF 176 (389)
T ss_pred ccccceeccCCcccHhH------------hhh----hc-ccceEeeehhhccHHHHHHHHHHHHhhhhcc---c-ceeEE
Confidence 35678999999997542 111 11 1457777776544444433322222211110 0 44667
Q ss_pred EeccCCCccccc---C--CCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRL---F--PNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 131 ~~~vpgSFy~~l---f--p~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
++| -+|+++| + ++-++|++=+=+|+|+.=. + ..-...+
T Consensus 177 ~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe------t-----------------------------ee~ar~~ 219 (389)
T KOG1975|consen 177 IAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE------T-----------------------------EESARIA 219 (389)
T ss_pred EEe--ccchhHHHHhccCCCCCcceeeeeeeEeeeec------c-----------------------------HHHHHHH
Confidence 776 4677554 3 4555999999999999422 1 1122456
Q ss_pred HHHHHHHhccCceEEEEeecC
Q 017747 206 LRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~ 226 (366)
|+.-++-|+|||.|+-+++-.
T Consensus 220 l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 220 LRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHHhhcCCCcEEEEecCcH
Confidence 888999999999999998544
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.025 Score=52.21 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCcchHH
Q 017747 50 KTINIADLGCSSGPNTLA 67 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~ 67 (366)
...+|+|+|||+|++|..
T Consensus 72 ~g~~VLEIGtGsGY~aAv 89 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAV 89 (209)
T ss_pred CCCeEEEECCCchHHHHH
Confidence 469999999999999864
No 135
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.71 E-value=0.031 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhccCceEEEEee
Q 017747 202 FTLFLRSRSEELVVGGRMVLILL 224 (366)
Q Consensus 202 ~~~FL~~Ra~EL~~GG~lvl~~~ 224 (366)
+..+|+.-.+-|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 45567777788999999999974
No 136
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.71 E-value=0.014 Score=54.58 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcC
Q 017747 205 FLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREG 284 (366)
Q Consensus 205 FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~g 284 (366)
++-.-+.-|+|||.|.++.=..++.. .+ .+.. .--|..+..=|++.++..|
T Consensus 207 ~~~~aa~~L~~gGlfaFSvE~l~~~~------~f---~l~p--------------------s~RyAH~~~YVr~~l~~~G 257 (287)
T COG4976 207 LFAGAAGLLAPGGLFAFSVETLPDDG------GF---VLGP--------------------SQRYAHSESYVRALLAASG 257 (287)
T ss_pred HHHHHHHhcCCCceEEEEecccCCCC------Ce---ecch--------------------hhhhccchHHHHHHHHhcC
Confidence 34455899999999999964333221 01 1111 1126667778999999999
Q ss_pred ceEEeeEEEEeec
Q 017747 285 SFKLDQLDMFQVE 297 (366)
Q Consensus 285 sf~i~~~e~~~~~ 297 (366)
|++..++.....
T Consensus 258 -l~~i~~~~ttiR 269 (287)
T COG4976 258 -LEVIAIEDTTIR 269 (287)
T ss_pred -ceEEEeecccch
Confidence 899888765544
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.56 E-value=0.057 Score=56.41 Aligned_cols=140 Identities=19% Similarity=0.145 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCc
Q 017747 23 SLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTND 102 (366)
Q Consensus 23 ~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ND 102 (366)
..|++.++...|.+.=....+. ....-.++|+|||.|..++. +.+ ..|+..++.-|.-.+
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf---~~~~p~~lEIG~G~G~~~~~--------~A~--------~~p~~~~iGiE~~~~- 382 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLV---NEKRKVFLEIGFGMGEHFIN--------QAK--------MNPDALFIGVEVYLN- 382 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhC---CCCCceEEEECCCchHHHHH--------HHH--------hCCCCCEEEEEeeHH-
Confidence 3788888887777654333322 12346779999999998763 222 356788888888643
Q ss_pred hhHHHhhCchhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEE
Q 017747 103 FNSVFKALPDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYI 182 (366)
Q Consensus 103 Fn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~ 182 (366)
.+-+.+.. .. ..+ ..++.+......+....||++|||-++-++-=-| |+.-- .|-++.
T Consensus 383 --~~~~~~~~----~~-~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkrh-------~krRl~- 440 (506)
T PRK01544 383 --GVANVLKL----AG-EQN---ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNKQ-------KKKRIF- 440 (506)
T ss_pred --HHHHHHHH----HH-HcC---CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCCC-------cccccc-
Confidence 23222211 11 111 3456543322233467799999999999988777 33110 111221
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 017747 183 SESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 183 ~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
. ..||..-++-|+|||.+.+.+
T Consensus 441 --------~-----------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 441 --------N-----------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred --------C-----------HHHHHHHHHhcCCCCEEEEEc
Confidence 1 246677789999999999875
No 138
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.42 E-value=0.02 Score=55.74 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.0
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
..+|+|+|||||-.++.
T Consensus 162 g~~vLDvG~GSGILaia 178 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIA 178 (295)
T ss_dssp TSEEEEES-TTSHHHHH
T ss_pred CCEEEEeCCcHHHHHHH
Confidence 46999999999999974
No 139
>PRK03612 spermidine synthase; Provisional
Probab=95.37 E-value=0.056 Score=56.66 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHh--hCchhHHHHhhhcCCCCC
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFK--ALPDFHRQLRNERGGGSS 126 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~--~l~~~~~~~~~~~~~~~~ 126 (366)
+++.+|+|+|||+|..+.. +.++ ++.-++...|+-..-....-+ .++..... ... .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~--------ll~~--------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~-d 353 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALRE--------VLKY--------PDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALD-D 353 (521)
T ss_pred CCCCeEEEEcCCccHHHHH--------HHhC--------CCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccC-C
Confidence 5678999999999987643 2121 122578888885543333222 12111100 000 1
Q ss_pred Cce-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 127 PSV-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 127 ~~~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
+++ ++.+.+..|-.+ .++++|++++...-+|- |. ..+.|. ..|
T Consensus 354 prv~vi~~Da~~~l~~--~~~~fDvIi~D~~~~~~---~~------------------------~~~L~t-------~ef 397 (521)
T PRK03612 354 PRVTVVNDDAFNWLRK--LAEKFDVIIVDLPDPSN---PA------------------------LGKLYS-------VEF 397 (521)
T ss_pred CceEEEEChHHHHHHh--CCCCCCEEEEeCCCCCC---cc------------------------hhccch-------HHH
Confidence 222 344333333222 34689999988443331 10 011111 235
Q ss_pred HHHHHHHhccCceEEEEe
Q 017747 206 LRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~ 223 (366)
++.-.+-|+|||++++..
T Consensus 398 ~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 398 YRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHhcCCCeEEEEec
Confidence 566678899999999875
No 140
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.26 E-value=0.44 Score=46.22 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCC
Q 017747 32 VKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLP 99 (366)
Q Consensus 32 ~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp 99 (366)
+..+|++++..+.. ...+++|+|+-||+|+- |++++.+. ...| .++.++|..
T Consensus 119 l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~------~~~~-~~i~LrDys 170 (311)
T PF12147_consen 119 LEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH------PERP-DSILLRDYS 170 (311)
T ss_pred HHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC------CCCC-ceEEEEeCC
Confidence 56677777776643 36789999999999986 44556442 1123 688999874
No 141
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.23 E-value=0.014 Score=51.50 Aligned_cols=75 Identities=7% Similarity=0.012 Sum_probs=43.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..|..+++. ..+++.-|+.......+-+.+.. ..++-
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~------------------~~~v~~vE~~~~~~~~~~~~~~~-------------~~~v~ 62 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER------------------AARVTAIEIDPRLAPRLREKFAA-------------ADNLT 62 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc------------------CCeEEEEECCHHHHHHHHHHhcc-------------CCCEE
Confidence 468999999999999753221 14677777754322222111110 11221
Q ss_pred EeccCCCcccccCCCCcccEEEcccccc
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSSNSLH 158 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~~alh 158 (366)
.+-+++.+-.+++.++|.++|+.-.|
T Consensus 63 --ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 63 --VIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred --EEECchhcCCccccCCCEEEECCCcc
Confidence 23467766667777788888864444
No 142
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.11 Score=50.22 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=65.4
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEEe
Q 017747 53 NIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYIA 132 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 132 (366)
+|+|+|||||..++. +.+. .|...|+..|+...=....-+ .. ..++ ..++++.
T Consensus 113 ~ilDlGTGSG~iai~--------la~~--------~~~~~V~a~Dis~~Al~~A~~-------Na-~~~~---l~~~~~~ 165 (280)
T COG2890 113 RILDLGTGSGAIAIA--------LAKE--------GPDAEVIAVDISPDALALARE-------NA-ERNG---LVRVLVV 165 (280)
T ss_pred cEEEecCChHHHHHH--------HHhh--------CcCCeEEEEECCHHHHHHHHH-------HH-HHcC---CccEEEE
Confidence 899999999999874 3332 344799999996421111100 01 1111 1122222
Q ss_pred ccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHH-HHHHHHHHHHHHHH
Q 017747 133 GYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQ-FQEDFTLFLRSRSE 211 (366)
Q Consensus 133 ~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q-~~~D~~~FL~~Ra~ 211 (366)
. ++.++.+-. .+|+++|+ |+-+..+ .+....+-+. -.| ....+..- --+..++|+..=.+
T Consensus 166 -~-~dlf~~~~~--~fDlIVsN---------PPYip~~-~~~~~~~~~~---~EP--~~Al~~g~dGl~~~~~i~~~a~~ 226 (280)
T COG2890 166 -Q-SDLFEPLRG--KFDLIVSN---------PPYIPAE-DPELLPEVVR---YEP--LLALVGGGDGLEVYRRILGEAPD 226 (280)
T ss_pred -e-eecccccCC--ceeEEEeC---------CCCCCCc-ccccChhhhc---cCH--HHHHccCccHHHHHHHHHHhhHH
Confidence 2 266566544 89999996 6655442 1111110000 000 11111111 12345677777888
Q ss_pred HhccCceEEEEe
Q 017747 212 ELVVGGRMVLIL 223 (366)
Q Consensus 212 EL~~GG~lvl~~ 223 (366)
-|+|||.+++..
T Consensus 227 ~l~~~g~l~le~ 238 (280)
T COG2890 227 ILKPGGVLILEI 238 (280)
T ss_pred HcCCCcEEEEEE
Confidence 899999888875
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=94.84 E-value=0.1 Score=52.21 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCC
Q 017747 48 DPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSP 127 (366)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~ 127 (366)
.+++.+|+++|||+|..... +.+. ++..+|...|+-... -.+.+..+.+.. ..+ .+.. .+
T Consensus 148 h~~PkrVLIIGgGdG~tlre--------lLk~--------~~v~~It~VEIDpeV-IelAr~~~~L~~-~~~-~~~~-Dp 207 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALRE--------VLKY--------ETVLHVDLVDLDGSM-INMARNVPELVS-LNK-SAFF-DN 207 (374)
T ss_pred CCCCCEEEEECCCHHHHHHH--------HHhc--------CCCCeEEEEeCCHHH-HHHHHhccccch-hcc-ccCC-CC
Confidence 35678999999999984322 1111 233678888886532 223332222111 000 0001 22
Q ss_pred ce-EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 128 SV-YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 128 ~~-f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
++ .+.+-+..|-.. .++++|+++... |.+... .....|. ..|+
T Consensus 208 RV~vvi~Da~~fL~~--~~~~YDVIIvDl--------~DP~~~-------------------~~~~LyT-------~EFy 251 (374)
T PRK01581 208 RVNVHVCDAKEFLSS--PSSLYDVIIIDF--------PDPATE-------------------LLSTLYT-------SELF 251 (374)
T ss_pred ceEEEECcHHHHHHh--cCCCccEEEEcC--------CCcccc-------------------chhhhhH-------HHHH
Confidence 33 233333333322 356789988762 211100 0112222 3566
Q ss_pred HHHHHHhccCceEEEE
Q 017747 207 RSRSEELVVGGRMVLI 222 (366)
Q Consensus 207 ~~Ra~EL~~GG~lvl~ 222 (366)
+...+-|+|||+|++.
T Consensus 252 ~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 252 ARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHhcCCCcEEEEe
Confidence 7778889999999887
No 144
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.30 E-value=0.22 Score=44.24 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=26.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTN 101 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~N 101 (366)
+..+++|+|||.|.-|.. +.++ ..+.-.|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~--------~~~~-------~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQV--------LLQR-------GGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHH--------HHTS-------TTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeee--------eeec-------ccccceEEEEecccc
Confidence 569999999999999864 2221 123488999999764
No 145
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.23 E-value=0.35 Score=47.64 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=42.4
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS 128 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~ 128 (366)
+...+|+|||||+|.-|..+++.+. .. .. .+..+--|+...--....+.|. . .. ++.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~-~~~Y~plDIS~~~L~~a~~~L~-------~---~~-~p~ 131 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALE----RQ-------KK-SVDYYALDVSRSELQRTLAELP-------L---GN-FSH 131 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH----hc-------CC-CceEEEEECCHHHHHHHHHhhh-------h---cc-CCC
Confidence 3456899999999999987766652 11 12 2788999997642222222222 0 11 455
Q ss_pred eEEeccCCCccc
Q 017747 129 VYIAGYPGSFYG 140 (366)
Q Consensus 129 ~f~~~vpgSFy~ 140 (366)
+-+.++-|+|..
T Consensus 132 l~v~~l~gdy~~ 143 (319)
T TIGR03439 132 VRCAGLLGTYDD 143 (319)
T ss_pred eEEEEEEecHHH
Confidence 666777778844
No 146
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=93.67 E-value=0.31 Score=45.62 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=69.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcC---CCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERG---GGSS 126 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~---~~~~ 126 (366)
...+|++.|||.|.+... |.+. | .+|+..|+...--...|+...-... ...... ....
T Consensus 43 ~~~rvLvPgCGkg~D~~~--------LA~~-----G-----~~V~GvDlS~~Ai~~~~~e~~~~~~-~~~~~~~~~~~~~ 103 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLF--------FLSK-----G-----VKVIGIELSEKAVLSFFSQNTINYE-VIHGNDYKLYKGD 103 (226)
T ss_pred CCCeEEEeCCCChHHHHH--------HHhC-----C-----CcEEEEecCHHHHHHHHHHcCCCcc-eecccccceeccC
Confidence 357999999999999875 3232 2 7899999977655555553221000 000000 0001
Q ss_pred CceEEeccCCCcccccCC---CCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHH
Q 017747 127 PSVYIAGYPGSFYGRLFP---NNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFT 203 (366)
Q Consensus 127 ~~~f~~~vpgSFy~~lfp---~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~ 203 (366)
.-.+.+ |+|++--.+ -+.+|+++=..+|+=| |+ +....|+
T Consensus 104 ~i~~~~---gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp-----------------------~~R~~Y~-------- 146 (226)
T PRK13256 104 DIEIYV---ADIFNLPKIANNLPVFDIWYDRGAYIAL---PN-----------------------DLRTNYA-------- 146 (226)
T ss_pred ceEEEE---ccCcCCCccccccCCcCeeeeehhHhcC---CH-----------------------HHHHHHH--------
Confidence 112333 577763211 2468888887777764 33 2455666
Q ss_pred HHHHHHHHHhccCceEEEEeec
Q 017747 204 LFLRSRSEELVVGGRMVLILLG 225 (366)
Q Consensus 204 ~FL~~Ra~EL~~GG~lvl~~~g 225 (366)
+.-++-|+|||.+++.++-
T Consensus 147 ---~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 147 ---KMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ---HHHHHHhCCCcEEEEEEEe
Confidence 4557889999999999873
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.60 E-value=1.1 Score=41.55 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCch
Q 017747 33 KHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPD 112 (366)
Q Consensus 33 ~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~ 112 (366)
-|.|.+.+..+. .+..-+|++-|||.|..... |.++ | .+|+..|+...=-...|+.-..
T Consensus 23 ~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~--------La~~-----G-----~~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 23 NPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLW--------LAEQ-----G-----HDVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp THHHHHHHHHHT---TSTSEEEEETTTTTSCHHHH--------HHHT-----T-----EEEEEEES-HHHHHHHHHHCTT
T ss_pred CHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHH--------HHHC-----C-----CeEEEEecCHHHHHHHHHHhcc
Confidence 355555544421 23457999999999998764 3332 2 8899999976544444332210
Q ss_pred hHHHHhhhcC---CCCCCceEEeccCCCcccccCCC--CcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCC
Q 017747 113 FHRQLRNERG---GGSSPSVYIAGYPGSFYGRLFPN--NSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSP 187 (366)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~f~~~vpgSFy~~lfp~--~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~ 187 (366)
. .......+ .+ ...+ ..+-|+||+ +-|. +++|+++=-.+|+=| |+.
T Consensus 82 ~-~~~~~~~~~~~~~-~~~i--~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp~--------------------- 132 (218)
T PF05724_consen 82 E-PTVTSVGGFKRYQ-AGRI--TIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PPE--------------------- 132 (218)
T ss_dssp E-EECTTCTTEEEET-TSSE--EEEES-TTT-GGGSCHHSEEEEEECSSTTTS----GG---------------------
T ss_pred C-CCcccccceeeec-CCce--EEEEccccc-CChhhcCCceEEEEecccccC---CHH---------------------
Confidence 0 00000000 00 0111 122258877 2222 258999988888764 432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCcc
Q 017747 188 SAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAH 267 (366)
Q Consensus 188 ~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 267 (366)
..+.|++ .-++=|+|||++++.++-.+.. ...-|
T Consensus 133 --~R~~Ya~-----------~l~~ll~p~g~~lLi~l~~~~~---------------------------------~~~GP 166 (218)
T PF05724_consen 133 --MRERYAQ-----------QLASLLKPGGRGLLITLEYPQG---------------------------------EMEGP 166 (218)
T ss_dssp --GHHHHHH-----------HHHHCEEEEEEEEEEEEES-CS---------------------------------CSSSS
T ss_pred --HHHHHHH-----------HHHHHhCCCCcEEEEEEEcCCc---------------------------------CCCCc
Confidence 4566774 4578999999955554422110 01244
Q ss_pred ccCCCHHHHHHHHhhcCceEEeeEEEEe
Q 017747 268 FYAPSKEEIEGEVGREGSFKLDQLDMFQ 295 (366)
Q Consensus 268 ~y~ps~eEv~~~i~~~gsf~i~~~e~~~ 295 (366)
=|.-+.+||++++. .+ |+|+.++...
T Consensus 167 Pf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 167 PFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp S----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred CCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 46668899999999 44 9998888743
No 148
>PLN02672 methionine S-methyltransferase
Probab=93.41 E-value=0.16 Score=57.35 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=28.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHH
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVF 107 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 107 (366)
..+|+|+|||+|..++. +.+. .|..+|+..|+...-.....
T Consensus 119 ~~~VLDlG~GSG~Iai~--------La~~--------~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 119 DKTVAELGCGNGWISIA--------IAEK--------WLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred CCEEEEEecchHHHHHH--------HHHH--------CCCCEEEEEECCHHHHHHHH
Confidence 35899999999999985 3332 13368999999765444433
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=93.37 E-value=0.15 Score=52.35 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=24.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCc
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTND 102 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ND 102 (366)
..+|+|+|||+|..|+.+ .+. ..+|+.-|.....
T Consensus 298 ~~~VLDlgcGtG~~sl~l--------a~~----------~~~V~gvD~s~~a 331 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPL--------ARQ----------AAEVVGVEGVEAM 331 (443)
T ss_pred CCEEEEEeccCCHHHHHH--------HHh----------CCEEEEEeCCHHH
Confidence 468999999999988753 221 1568888876543
No 150
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=0.8 Score=41.58 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhC
Q 017747 31 TVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKAL 110 (366)
Q Consensus 31 ~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 110 (366)
.+++.||+...++... .+.-.+|+|||||--|-.+.+.+ + |.+..+..|+-.- .+-.++
T Consensus 27 lLlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i------------~---~~~~~latDiNp~---A~~~Tl 85 (209)
T KOG3191|consen 27 LLLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVI------------G---PQALYLATDINPE---ALEATL 85 (209)
T ss_pred HHHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhc------------C---CCceEEEecCCHH---HHHHHH
Confidence 3677777777766432 36778999999999886654444 2 3477778887321 111111
Q ss_pred chhHHHHhhhcCCCCCCceEEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHH
Q 017747 111 PDFHRQLRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAV 190 (366)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v 190 (366)
. ....+ .+-+-.|-.|+..-|-+ +++|+..=+ |+-+.....+. | ....
T Consensus 86 ~-----TA~~n------~~~~~~V~tdl~~~l~~-~~VDvLvfN---------PPYVpt~~~~i---~--------~~~i 133 (209)
T KOG3191|consen 86 E-----TARCN------RVHIDVVRTDLLSGLRN-ESVDVLVFN---------PPYVPTSDEEI---G--------DEGI 133 (209)
T ss_pred H-----HHHhc------CCccceeehhHHhhhcc-CCccEEEEC---------CCcCcCCcccc---h--------hHHH
Confidence 1 01111 12223344466666655 888876532 44332211100 0 0113
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhccCceEEEEeecCCC
Q 017747 191 SKAYF--KQFQEDFTLFLRSRSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 191 ~~ay~--~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~ 228 (366)
..+|+ +--+.=..+||..--.-|.|-|.+.+..+-++.
T Consensus 134 ~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 134 ASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred HHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 34454 444555667888888889999999999876654
No 151
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=93.09 E-value=0.4 Score=47.42 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=64.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
+.-+|+|.|||+|-.|+.. .+. |. ..|+.-|- +... .....+.+.++. ..+
T Consensus 60 ~dK~VlDVGcGtGILS~F~--------akA-----GA----~~V~aVe~-----S~ia----~~a~~iv~~N~~---~~i 110 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFA--------AKA-----GA----RKVYAVEA-----SSIA----DFARKIVKDNGL---EDV 110 (346)
T ss_pred CCCEEEEcCCCccHHHHHH--------HHh-----Cc----ceEEEEec-----hHHH----HHHHHHHHhcCc---cce
Confidence 4578999999999999751 111 31 45555542 2222 222223232222 222
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+-.+.|.-.+-.+|-..+|++.|-|-=+||-. +.=+...|-+|
T Consensus 111 -i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~------------------------------------EsMldsVl~AR 153 (346)
T KOG1499|consen 111 -ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY------------------------------------ESMLDSVLYAR 153 (346)
T ss_pred -EEEeecceEEEecCccceeEEeehhhhHHHHH------------------------------------hhhhhhhhhhh
Confidence 33345566555688899999999887777643 12234457799
Q ss_pred HHHhccCceEE
Q 017747 210 SEELVVGGRMV 220 (366)
Q Consensus 210 a~EL~~GG~lv 220 (366)
-+=|+|||.++
T Consensus 154 dkwL~~~G~i~ 164 (346)
T KOG1499|consen 154 DKWLKEGGLIY 164 (346)
T ss_pred hhccCCCceEc
Confidence 99999999886
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.05 E-value=0.31 Score=45.69 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=69.2
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
-.++|+|||.|...+. +.. ..|+.-++.-+.-.+ .+-+.+.. .. +.+ ..|+.+
T Consensus 50 pi~lEIGfG~G~~l~~--------~A~--------~nP~~nfiGiEi~~~---~v~~~l~k----~~-~~~---l~Nlri 102 (227)
T COG0220 50 PIVLEIGFGMGEFLVE--------MAK--------KNPEKNFLGIEIRVP---GVAKALKK----IK-ELG---LKNLRL 102 (227)
T ss_pred cEEEEECCCCCHHHHH--------HHH--------HCCCCCEEEEEEehH---HHHHHHHH----HH-HcC---CCcEEE
Confidence 4789999999997653 222 357788888887543 22222211 11 111 224443
Q ss_pred e-ccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 132 A-GYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 132 ~-~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
. .-.-.+.+.++|++|+|=++-++.=-| |+.-= +|.++. . ..||+.-+
T Consensus 103 ~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH-------~KRRl~----~----------------~~fl~~~a 151 (227)
T COG0220 103 LCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRH-------HKRRLT----Q----------------PEFLKLYA 151 (227)
T ss_pred EcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccc-------cccccC----C----------------HHHHHHHH
Confidence 3 222344567778889999999887777 33110 222221 1 24677889
Q ss_pred HHhccCceEEEEe
Q 017747 211 EELVVGGRMVLIL 223 (366)
Q Consensus 211 ~EL~~GG~lvl~~ 223 (366)
+-|+|||.+.+.+
T Consensus 152 ~~Lk~gG~l~~aT 164 (227)
T COG0220 152 RKLKPGGVLHFAT 164 (227)
T ss_pred HHccCCCEEEEEe
Confidence 9999999999986
No 153
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.82 E-value=0.49 Score=43.93 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=66.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
..++++|+||=+..|... ..+.+.|..-||-+. .+.|
T Consensus 51 ~~lrlLEVGals~~N~~s-------------------~~~~fdvt~IDLns~------------------------~~~I 87 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS-------------------TSGWFDVTRIDLNSQ------------------------HPGI 87 (219)
T ss_pred ccceEEeecccCCCCccc-------------------ccCceeeEEeecCCC------------------------CCCc
Confidence 459999999999988752 123488999999653 1122
Q ss_pred EEeccCCCcccccCC---CCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFP---NNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFL 206 (366)
Q Consensus 130 f~~~vpgSFy~~lfp---~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL 206 (366)
.= -+|.++.+| ++++|++..|..|.+ +|.+.. +| .-|
T Consensus 88 ~q----qDFm~rplp~~~~e~FdvIs~SLVLNf---VP~p~~--------RG-------------------------~Ml 127 (219)
T PF11968_consen 88 LQ----QDFMERPLPKNESEKFDVISLSLVLNF---VPDPKQ--------RG-------------------------EML 127 (219)
T ss_pred ee----eccccCCCCCCcccceeEEEEEEEEee---CCCHHH--------HH-------------------------HHH
Confidence 22 288898876 678999999999988 454220 11 124
Q ss_pred HHHHHHhccCce-----EEEEeecCC
Q 017747 207 RSRSEELVVGGR-----MVLILLGRI 227 (366)
Q Consensus 207 ~~Ra~EL~~GG~-----lvl~~~g~~ 227 (366)
+.-.+=|+|+|. |+++++-.+
T Consensus 128 ~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 128 RRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHhCCCCccCcceEEEEeCchH
Confidence 566778999999 999886543
No 154
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.56 E-value=0.61 Score=43.69 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
++-+|+|+||++|.-++.+...+ ++..+++..|...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~---------------~~~g~v~tiD~d~ 103 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL---------------PEDGRITAIDIDK 103 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC---------------CCCCEEEEEECCH
Confidence 46899999999999887532211 2346888888864
No 155
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=92.49 E-value=0.46 Score=46.90 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHH---------------HHHHHHHHcCccchhhhcc
Q 017747 199 QEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLS---------------RSLAILVSQGEIEKEKLVA 263 (366)
Q Consensus 199 ~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~---------------~al~~mv~eG~i~~e~~d~ 263 (366)
++=+..+|.+| +=|+|.|.|+=++ |+-.-.|.+.+.-+ .|... ..|..-+-+|.+.+--+|.
T Consensus 259 ERMLEsYl~Ar-k~l~P~GkMfPT~-gdiHlAPFsDE~Ly-~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDt 335 (517)
T KOG1500|consen 259 ERMLESYLHAR-KWLKPNGKMFPTV-GDIHLAPFSDEQLY-VEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDT 335 (517)
T ss_pred HHHHHHHHHHH-hhcCCCCcccCcc-cceeecccchHHHH-HHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccc
Confidence 35577888999 9999999998664 44333343332211 12111 1222223345566666777
Q ss_pred cCccccC
Q 017747 264 YHAHFYA 270 (366)
Q Consensus 264 f~~P~y~ 270 (366)
|.+.+..
T Consensus 336 FD~Rilm 342 (517)
T KOG1500|consen 336 FDIRILM 342 (517)
T ss_pred cccceee
Confidence 7666553
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.37 E-value=0.052 Score=51.97 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeccCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHH
Q 017747 6 LFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAI 68 (366)
Q Consensus 6 ~l~M~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~ 68 (366)
.|.|.|=.-..+|.+|-..+..+++.+...+. .....+|+|+|||+|..|..+
T Consensus 8 ~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L 60 (272)
T PRK00274 8 LLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPL 60 (272)
T ss_pred HHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHH
Confidence 34444444455677766666666654443321 123468999999999999753
No 157
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=92.16 E-value=0.44 Score=46.21 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=28.9
Q ss_pred CceEEEeecCCCCcc--hHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHh
Q 017747 50 KTINIADLGCSSGPN--TLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFK 108 (366)
Q Consensus 50 ~~~~IaDlGCs~G~n--s~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~ 108 (366)
.+++|...|||||-= |+.+ .+.+.. +.....++|+..|+..+--...-+
T Consensus 115 ~~irIWSAgCStGEEpYSlAm------ll~e~~----~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAM------TLADTL----GTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CCEEEEEccccCCHHHHHHHH------HHHHhh----cccCCCcEEEEEECCHHHHHHHHh
Confidence 469999999999953 3321 122221 111124899999997654444333
No 158
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.98 E-value=1.7 Score=41.78 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=27.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
.+++|--.|||||-=.--+.-. +.+.... .....++++..|+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~----l~e~~~~---~~~~~~~I~AtDId~ 139 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAML----LLEALGK---LAGFRVKILATDIDL 139 (268)
T ss_pred CceEEEecCcCCCccHHHHHHH----HHHHhcc---ccCCceEEEEEECCH
Confidence 5899999999999644322222 2222111 123359999999943
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.76 E-value=0.4 Score=42.69 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
....+|+|||||+|--++.+... .....|++.|++.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~----------------~~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL----------------FGAARVVLTDYNE 79 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-----------------T-SEEEEEE-S-
T ss_pred cCCceEEEECCccchhHHHHHhc----------------cCCceEEEeccch
Confidence 34689999999999888753211 0127899999875
No 160
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=91.48 E-value=0.45 Score=40.82 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 30 DTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 30 ~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
+++..++...++.. .....+.+|+|+|||.|+.|+.+...+ .. ..+..+|+.-|.-.
T Consensus 7 ~~~~~~i~~~~~~~--~~~~~~~~vvD~GsG~GyLs~~La~~l--------~~----~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 7 ERMAELIDSLCDSV--GESKRCITVVDLGSGKGYLSRALAHLL--------CN----SSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHHh--hccCCCCEEEEeCCChhHHHHHHHHHH--------Hh----cCCCCeEEEEECCc
Confidence 34444555544422 112457999999999999998643311 11 12458888888743
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=91.47 E-value=1.1 Score=42.55 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhccCceEEEE
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLI 222 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~ 222 (366)
..+.+||+.-++-|.|||+||+.
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEc
Confidence 46889999999999999999986
No 162
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=91.42 E-value=1.7 Score=41.97 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
.-.|+|+|||+|.-|+.++..+ |.-.++..|+...- .+....+.+.+. . .+.+-
T Consensus 149 ~~~ildlgtGSGaIslsll~~L----------------~~~~v~AiD~S~~A----i~La~eN~qr~~----l--~g~i~ 202 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL----------------PQCTVTAIDVSKAA----IKLAKENAQRLK----L--SGRIE 202 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC----------------CCceEEEEeccHHH----HHHHHHHHHHHh----h--cCceE
Confidence 4479999999999998643322 34778888876421 111111111111 1 11222
Q ss_pred Ee--ccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHH--------HH
Q 017747 131 IA--GYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQ--------FQ 199 (366)
Q Consensus 131 ~~--~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q--------~~ 199 (366)
+. -.-++-|... .+.+.+|+..|+ |+-+.++. |.+- .++| ..|..- -.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsN---------PPYI~~dD----~~~l-------~~eV-~~yEp~lALdGg~eG~ 261 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSN---------PPYIRKDD----NRQL-------KPEV-RLYEPKLALDGGLEGY 261 (328)
T ss_pred EEecccccccccccccccCceeEEecC---------CCcccccc----hhhc-------Cchh-eecCchhhhccccchh
Confidence 21 1124555555 788999999886 55443321 1100 0001 111111 12
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCC
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~ 228 (366)
.-+..|+..-.+-|+|||.++|.+.++..
T Consensus 262 ~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 262 DNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred HHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 23556777779999999999999998854
No 163
>PHA03412 putative methyltransferase; Provisional
Probab=91.32 E-value=0.17 Score=47.78 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|..++.+...+ . ..+..+|+.-|+-.+.....-+.++ ..-+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~--------~-----~~~~~~V~aVEID~~Al~~Ar~n~~---------------~~~~ 101 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMM--------M-----YAKPREIVCVELNHTYYKLGKRIVP---------------EATW 101 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhc--------c-----cCCCcEEEEEECCHHHHHHHHhhcc---------------CCEE
Confidence 5799999999999887532222 1 1124789999986543333322221 1122
Q ss_pred EeccCCCcccccCCCCcccEEEcc
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSS 154 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~ 154 (366)
+. ++|.... +++++|+++|+
T Consensus 102 ~~---~D~~~~~-~~~~FDlIIsN 121 (241)
T PHA03412 102 IN---ADALTTE-FDTLFDMAISN 121 (241)
T ss_pred EE---cchhccc-ccCCccEEEEC
Confidence 32 4664332 35689999986
No 164
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.28 E-value=1 Score=41.21 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 017747 143 FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLI 222 (366)
Q Consensus 143 fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~ 222 (366)
.+.+.+|++++-+.|-.++..- =.+.++.-++-|+|||.|++.
T Consensus 132 ~~~~~fD~I~CRNVlIYF~~~~-------------------------------------~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 132 PPFGRFDLIFCRNVLIYFDPET-------------------------------------QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp -----EEEEEE-SSGGGS-HHH-------------------------------------HHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCccEEEecCEEEEeCHHH-------------------------------------HHHHHHHHHHHcCCCCEEEEe
Confidence 4667889999998888765411 123356668999999999875
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=91.10 E-value=0.28 Score=46.57 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.7
Q ss_pred CceEEEeecCCCCcchHH
Q 017747 50 KTINIADLGCSSGPNTLA 67 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~ 67 (366)
+..+|+|+|||+|..|..
T Consensus 29 ~~~~VLEIG~G~G~lt~~ 46 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDE 46 (258)
T ss_pred CcCeEEEEeCccCHHHHH
Confidence 357899999999999985
No 166
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.47 E-value=0.4 Score=52.12 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=63.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCc-e
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPS-V 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~-~ 129 (366)
.-+|+|+||++|..|+.+. .. | . .+|+..|+...-....-+.+ .. ++.. ..+ -
T Consensus 539 g~rVLDlf~gtG~~sl~aa--------~~-----G---a-~~V~~vD~s~~al~~a~~N~-------~~-ng~~-~~~v~ 592 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAA--------LG-----G---A-KSTTTVDMSNTYLEWAERNF-------AL-NGLS-GRQHR 592 (702)
T ss_pred CCeEEEcCCCCCHHHHHHH--------HC-----C---C-CEEEEEeCCHHHHHHHHHHH-------HH-hCCC-ccceE
Confidence 4689999999999998521 11 1 1 46899998654322222111 11 1110 012 2
Q ss_pred EEeccCCCccccc-CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRL-FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~~vpgSFy~~l-fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
|+. ++.++-+ -..+++|++++. |+.+... +. ...+ ....+|+..++..
T Consensus 593 ~i~---~D~~~~l~~~~~~fDlIilD---------PP~f~~~------~~--------~~~~-----~~~~~~y~~l~~~ 641 (702)
T PRK11783 593 LIQ---ADCLAWLKEAREQFDLIFID---------PPTFSNS------KR--------MEDS-----FDVQRDHVALIKD 641 (702)
T ss_pred EEE---ccHHHHHHHcCCCcCEEEEC---------CCCCCCC------Cc--------cchh-----hhHHHHHHHHHHH
Confidence 333 3433211 015689999876 4444220 00 0001 1234567777777
Q ss_pred HHHHhccCceEEEEe
Q 017747 209 RSEELVVGGRMVLIL 223 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~ 223 (366)
-.+-|+|||.++++.
T Consensus 642 a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 642 AKRLLRPGGTLYFSN 656 (702)
T ss_pred HHHHcCCCCEEEEEe
Confidence 788999999998875
No 167
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=88.83 E-value=2.8 Score=42.50 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEe
Q 017747 197 QFQEDFTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 197 Q~~~D~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
...+++..++..-.+-|+|||.+++..
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 345677788888888999999999765
No 168
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=88.77 E-value=1.7 Score=45.11 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=66.9
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|++||.|.-|..+.+.+ + .+-.|+.||...+-...|-+.+.. .| ..++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l------------~---~~g~lvA~D~~~~R~~~L~~nl~r--------~G---~~nv 166 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALM------------N---NQGAIVANEYSASRVKVLHANISR--------CG---VSNV 166 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc------------C---CCCEEEEEeCCHHHHHHHHHHHHH--------cC---CCeE
Confidence 34799999999999997643222 1 125799999977655555443321 11 2233
Q ss_pred EEe-ccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIA-GYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 130 f~~-~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
-+. .-+..+ ...+| +.+|.++ =++||.-.. .+.|..--....++..+. +..+-=..+|..
T Consensus 167 ~v~~~D~~~~-~~~~~-~~fD~IL--------vDaPCSG~G----~~rk~p~~~~~~s~~~v~-----~l~~lQ~~iL~~ 227 (470)
T PRK11933 167 ALTHFDGRVF-GAALP-ETFDAIL--------LDAPCSGEG----TVRKDPDALKNWSPESNL-----EIAATQRELIES 227 (470)
T ss_pred EEEeCchhhh-hhhch-hhcCeEE--------EcCCCCCCc----ccccCHHHhhhCCHHHHH-----HHHHHHHHHHHH
Confidence 222 222222 12222 3466665 233443211 000000000001222222 222333557788
Q ss_pred HHHHhccCceEEEEeecC
Q 017747 209 RSEELVVGGRMVLILLGR 226 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~ 226 (366)
=++-|+|||+||-+++.-
T Consensus 228 A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 228 AFHALKPGGTLVYSTCTL 245 (470)
T ss_pred HHHHcCCCcEEEEECCCC
Confidence 888999999998887654
No 169
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=86.87 E-value=1.9 Score=41.15 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.6
Q ss_pred CceEEEeecCCCCcchHH
Q 017747 50 KTINIADLGCSSGPNTLA 67 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~ 67 (366)
+..+++|+|.|+|.-|..
T Consensus 94 ~~~~lLDlGAGdG~VT~~ 111 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER 111 (265)
T ss_pred cCCceEEecCCCcHHHHH
Confidence 457899999999999874
No 170
>PLN02823 spermine synthase
Probab=86.72 E-value=2.7 Score=41.66 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCceEEEeecCCCCcchH
Q 017747 49 PKTINIADLGCSSGPNTL 66 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~ 66 (366)
+++.+|+.+|+|.|....
T Consensus 102 ~~pk~VLiiGgG~G~~~r 119 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAR 119 (336)
T ss_pred CCCCEEEEECCCchHHHH
Confidence 567899999999997654
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=86.51 E-value=0.69 Score=43.60 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=15.7
Q ss_pred CceEEEeecCCCCcchHH
Q 017747 50 KTINIADLGCSSGPNTLA 67 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~ 67 (366)
...+|+|+|||+|..|..
T Consensus 29 ~~~~VLEiG~G~G~lt~~ 46 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEP 46 (253)
T ss_pred CcCEEEEeCCCCCHHHHH
Confidence 457899999999999875
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=86.18 E-value=1.7 Score=42.85 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=43.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCce
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~ 129 (366)
...+|+|+|||+|....++ .. ..+..+++..|+-..-....-+.+ ..+.+. ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lL--------a~--------~~~~~~~~atDId~~Al~~A~~Nv-------~~Np~l--~~~I 168 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI--------GV--------HEYGWRFVGSDIDPQALASAQAII-------SANPGL--NGAI 168 (321)
T ss_pred CCceEEEecCCccHHHHHH--------Hh--------hCCCCEEEEEeCCHHHHHHHHHHH-------HhccCC--cCcE
Confidence 4589999999999655432 11 123478999998432222111111 111011 1123
Q ss_pred --EEeccCCCccccc-CCCCcccEEEcc
Q 017747 130 --YIAGYPGSFYGRL-FPNNSLHFIHSS 154 (366)
Q Consensus 130 --f~~~vpgSFy~~l-fp~~s~~~~~S~ 154 (366)
.....++..+..+ .+.+.+|+++|+
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeC
Confidence 2233445555554 467899999996
No 173
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=85.64 E-value=0.71 Score=43.27 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=26.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCch
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDF 103 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDF 103 (366)
+..+|+|+|||+|..|..+ .+. | --+|+.-|...++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l--------~~~-----g----a~~v~avD~~~~~l 111 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCA--------LQK-----G----AKEVYGVDVGYNQL 111 (228)
T ss_pred CCCEEEEcccCCCHHHHHH--------HHc-----C----CCEEEEEeCCHHHH
Confidence 4568999999999999742 221 1 16799999987643
No 174
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=85.39 E-value=6 Score=37.68 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=75.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHh-hCchhHHHHhhhcCCCCCCce
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFK-ALPDFHRQLRNERGGGSSPSV 129 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~-~l~~~~~~~~~~~~~~~~~~~ 129 (366)
-.+|+|.|.|||..|..+...+ .|+-+|+--|.-. ||-...+ ++..+ +.+ ....
T Consensus 95 g~rVlEAGtGSG~lt~~La~~v---------------g~~G~v~tyE~r~-d~~k~A~~Nl~~~--------~l~-d~v~ 149 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAV---------------GPEGHVTTYEIRE-DFAKTARENLSEF--------GLG-DRVT 149 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhh---------------CCCceEEEEEecH-HHHHHHHHHHHHh--------ccc-cceE
Confidence 4899999999999998643333 2446777777654 5554432 22111 111 1111
Q ss_pred EEeccCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017747 130 YIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSR 209 (366)
Q Consensus 130 f~~~vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 209 (366)
+.. |+..+-.++. .+|.+|= ++|.+- . .|..-
T Consensus 150 ~~~---~Dv~~~~~~~-~vDav~L--------Dmp~PW---------------------~---------------~le~~ 181 (256)
T COG2519 150 LKL---GDVREGIDEE-DVDAVFL--------DLPDPW---------------------N---------------VLEHV 181 (256)
T ss_pred EEe---cccccccccc-ccCEEEE--------cCCChH---------------------H---------------HHHHH
Confidence 222 6777777766 7777762 334321 1 25677
Q ss_pred HHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccC
Q 017747 210 SEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYH 265 (366)
Q Consensus 210 a~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~ 265 (366)
++.|+|||.+++-.+. .+.+...+..|-+.|..+.+..+...
T Consensus 182 ~~~Lkpgg~~~~y~P~--------------veQv~kt~~~l~~~g~~~ie~~E~l~ 223 (256)
T COG2519 182 SDALKPGGVVVVYSPT--------------VEQVEKTVEALRERGFVDIEAVETLV 223 (256)
T ss_pred HHHhCCCcEEEEEcCC--------------HHHHHHHHHHHHhcCccchhhheeee
Confidence 9999999999988633 34566666666556766665544433
No 175
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.30 E-value=3.4 Score=39.62 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.1
Q ss_pred CceEEEeecCCCCcchH
Q 017747 50 KTINIADLGCSSGPNTL 66 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (366)
.|.+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 57899999999997543
No 176
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=84.89 E-value=1.3 Score=43.24 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCC
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTN 101 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~N 101 (366)
+.+|+|+|||+|..++.+. +. ..+|+..|+...
T Consensus 174 ~~~VLDl~cG~G~~sl~la--------~~----------~~~V~gvD~s~~ 206 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA--------TP----------GMQLTGIEISAE 206 (315)
T ss_pred CCEEEEccCCCCHHHHHHH--------hc----------CCEEEEEeCCHH
Confidence 4789999999999987532 11 157888888643
No 177
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=84.66 E-value=11 Score=36.29 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHH
Q 017747 199 QEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEG 278 (366)
Q Consensus 199 ~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~ 278 (366)
+++.-.+|..-.+-||||| +...+|.-- |=++ ++ + + -+-...-.|.||+++
T Consensus 178 A~Ni~~Yi~tI~~lLkpgG--~WIN~GPLl---------yh~~-------~~---~-~-------~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 178 AENIIEYIETIEHLLKPGG--YWINFGPLL---------YHFE-------PM---S-I-------PNEMSVELSLEEIKE 228 (270)
T ss_pred hHHHHHHHHHHHHHhccCC--EEEecCCcc---------ccCC-------CC---C-C-------CCCcccCCCHHHHHH
Confidence 3566778889999999999 344444421 1001 00 0 0 001115578999999
Q ss_pred HHhhcCceEEeeEEE-Eeec
Q 017747 279 EVGREGSFKLDQLDM-FQVE 297 (366)
Q Consensus 279 ~i~~~gsf~i~~~e~-~~~~ 297 (366)
+++.-| |++.+-+. ....
T Consensus 229 l~~~~G-F~~~~~~~~i~~~ 247 (270)
T PF07942_consen 229 LIEKLG-FEIEKEESSILSG 247 (270)
T ss_pred HHHHCC-CEEEEEEEeeecC
Confidence 999999 99987766 4443
No 178
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.00 E-value=0.62 Score=42.42 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.8
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
.-+|+|+|||||..++.
T Consensus 46 g~~V~DlG~GTG~La~g 62 (198)
T COG2263 46 GKTVLDLGAGTGILAIG 62 (198)
T ss_pred CCEEEEcCCCcCHHHHH
Confidence 45799999999999874
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=82.28 E-value=1.6 Score=42.45 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.2
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 017747 50 KTINIADLGCSSGPNTLAIIK 70 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~ 70 (366)
..-+|+|+|||+|..|..++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred CcCEEEEecCchHHHHHHHHH
Confidence 346899999999999986543
No 180
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=81.62 E-value=2 Score=40.96 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=55.8
Q ss_pred CcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeec
Q 017747 146 NSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLG 225 (366)
Q Consensus 146 ~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g 225 (366)
...|.+.|+.||.=.++-+. .+.+=|++-+.-|||||.|++....
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~-----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD-----------------------------------EYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH-----------------------------------HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred cchhhhhhhHHHHHHcCCHH-----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 35999999999987665322 2233456778999999999999875
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhhcCceEEeeEE
Q 017747 226 RIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLD 292 (366)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~~gsf~i~~~e 292 (366)
..+. |+ -| .-.+|...-+.+.|+++|+++| |.|...+
T Consensus 202 ~~t~--------Y~-------------vG--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 202 GSTY--------YM-------------VG--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp S-SE--------EE-------------ET--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred Ccee--------EE-------------EC--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 5431 21 01 1247788889999999999999 9998877
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=79.24 E-value=1.3 Score=45.57 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=41.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+|||+|+.+...++.. .+. + . ..+||.-.--.|-.-++-+.+ +.++++ ..|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~----~~~-----~--~-a~~VyAVEkn~~A~~~l~~~v--------~~n~w~--~~V- 243 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG----ARA-----G--G-AVKVYAVEKNPNAVVTLQKRV--------NANGWG--DKV- 243 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT----HHH-----C--C-ESEEEEEESSTHHHHHHHHHH--------HHTTTT--TTE-
T ss_pred ceEEEEeCCCccHHHHHHHHHH----HHh-----C--C-CeEEEEEcCCHhHHHHHHHHH--------HhcCCC--CeE-
Confidence 5789999999999987643332 111 1 1 278888776544333322111 122321 233
Q ss_pred EeccCCCcccccCCCCcccEEEcc
Q 017747 131 IAGYPGSFYGRLFPNNSLHFIHSS 154 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~s~~~~~S~ 154 (366)
..+.|+- +.+-++..+|+++|=
T Consensus 244 -~vi~~d~-r~v~lpekvDIIVSE 265 (448)
T PF05185_consen 244 -TVIHGDM-REVELPEKVDIIVSE 265 (448)
T ss_dssp -EEEES-T-TTSCHSS-EEEEEE-
T ss_pred -EEEeCcc-cCCCCCCceeEEEEe
Confidence 2333444 667777799999983
No 182
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=79.14 E-value=6 Score=31.14 Aligned_cols=24 Identities=46% Similarity=0.427 Sum_probs=18.3
Q ss_pred HHHHHHHhccCceEEEEeecCCCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRIGP 229 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~~~ 229 (366)
+....+-|+|||.+++........
T Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 138 LRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHhcCCCcEEEEEeccCCCC
Confidence 345577799999999998776553
No 183
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=77.45 E-value=2.8 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.6
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
..+|+|+|||+|..++.
T Consensus 54 ~~~vLDl~~GsG~l~l~ 70 (199)
T PRK10909 54 DARCLDCFAGSGALGLE 70 (199)
T ss_pred CCEEEEcCCCccHHHHH
Confidence 36899999999998874
No 184
>PRK04148 hypothetical protein; Provisional
Probab=76.69 E-value=7.2 Score=33.56 Aligned_cols=15 Identities=27% Similarity=0.209 Sum_probs=12.6
Q ss_pred CceEEEeecCCCCcc
Q 017747 50 KTINIADLGCSSGPN 64 (366)
Q Consensus 50 ~~~~IaDlGCs~G~n 64 (366)
+..+|+|+|||+|..
T Consensus 16 ~~~kileIG~GfG~~ 30 (134)
T PRK04148 16 KNKKIVELGIGFYFK 30 (134)
T ss_pred cCCEEEEEEecCCHH
Confidence 458899999999973
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=73.68 E-value=8.8 Score=36.38 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=25.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
++-+|+++|+++|+-|+.+...+ ++..+++--|...
T Consensus 79 ~ak~iLEiGT~~GySal~la~al---------------~~~g~v~tiE~~~ 114 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALAL---------------PEDGKILAMDINR 114 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhC---------------CCCCEEEEEeCCH
Confidence 56899999999999988532221 2346777777643
No 186
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=73.14 E-value=43 Score=33.19 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHH
Q 017747 200 EDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGE 279 (366)
Q Consensus 200 ~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~ 279 (366)
+..-.+|..-.+-|||||..+ .+|.-- | - ++. + -..-+.+..-.|.|++..+
T Consensus 273 ~NileYi~tI~~iLk~GGvWi--NlGPLl---------Y--H-F~d-------~-------~g~~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWI--NLGPLL---------Y--H-FED-------T-------HGVENEMSIELSLEDLKRV 324 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEE--ecccee---------e--e-ccC-------C-------CCCcccccccccHHHHHHH
Confidence 345567889999999999765 333311 0 0 000 0 0113567788899999999
Q ss_pred HhhcCceEEeeEEEEeec
Q 017747 280 VGREGSFKLDQLDMFQVE 297 (366)
Q Consensus 280 i~~~gsf~i~~~e~~~~~ 297 (366)
.+.-| |++++-+.++..
T Consensus 325 ~~~~G-F~~~ke~~Idt~ 341 (369)
T KOG2798|consen 325 ASHRG-FEVEKERGIDTT 341 (369)
T ss_pred HHhcC-cEEEEeeeeecc
Confidence 99999 999888866544
No 187
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=72.64 E-value=4.6 Score=38.22 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=39.0
Q ss_pred ccCCCccccc--CCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 133 GYPGSFYGRL--FPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRS 210 (366)
Q Consensus 133 ~vpgSFy~~l--fp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 210 (366)
.+.|+-|+-+ |+++|+|+++ .+ |+-+.- +.+.|...|.+.| +
T Consensus 189 iilGD~~e~V~~~~D~sfDaIi--------HD-PPRfS~--------------------AgeLYseefY~El-------~ 232 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAII--------HD-PPRFSL--------------------AGELYSEEFYREL-------Y 232 (287)
T ss_pred EecccHHHHHhcCCccccceEe--------eC-CCccch--------------------hhhHhHHHHHHHH-------H
Confidence 4668888777 9999999985 24 443311 3467776555444 6
Q ss_pred HHhccCceEEEEee
Q 017747 211 EELVVGGRMVLILL 224 (366)
Q Consensus 211 ~EL~~GG~lvl~~~ 224 (366)
+-|+|||+|+=-..
T Consensus 233 RiLkrgGrlFHYvG 246 (287)
T COG2521 233 RILKRGGRLFHYVG 246 (287)
T ss_pred HHcCcCCcEEEEeC
Confidence 78899999987653
No 188
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=72.33 E-value=7.8 Score=37.36 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=27.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLP 99 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp 99 (366)
...+|+|-.||+|..-+..+..+.+.- . ..+..+++..|+-
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~-~--------~~~~~~i~G~ei~ 86 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKR-N--------KIKEINIYGIEID 86 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCH-H--------HHCCEEEEEEES-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccc-c--------ccccceeEeecCc
Confidence 457899999999998776655553321 1 1234899999984
No 189
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=70.96 E-value=71 Score=32.11 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCC
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTN 101 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~N 101 (366)
.+.+.|+|||.+.|. -+-.+|+.|.++. ..+|.+.++.-+.|..
T Consensus 109 ~~~vHIID~~i~~G~----QW~~LiqaLa~R~-----~gpp~LrIT~i~~~~~ 152 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGV----QWPSLIQALASRP-----GGPPSLRITGIGPPNS 152 (374)
T ss_pred CcceEEEeccCCcch----HHHHHHHHHhcCC-----CCCCeEEEEeccCCCC
Confidence 356899999999995 3556677776652 2466899999999764
No 190
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=70.46 E-value=5.8 Score=39.76 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred eEEEeecCCCCcchHHH
Q 017747 52 INIADLGCSSGPNTLAI 68 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~ 68 (366)
.+|+|+|||+|..++.+
T Consensus 235 ~~vLDL~cG~G~~~l~l 251 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHC 251 (374)
T ss_pred CEEEEccCCccHHHHHH
Confidence 58999999999998753
No 191
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=69.41 E-value=5.8 Score=35.82 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.9
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
..+++|++||+|..++.
T Consensus 50 g~~vLDLfaGsG~lgle 66 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEE 66 (189)
T ss_pred CCEEEEecCCCcHHHHH
Confidence 46899999999999875
No 192
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=69.30 E-value=13 Score=37.32 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=39.4
Q ss_pred cCCCcccccCCCCcccEEEcccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017747 134 YPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEEL 213 (366)
Q Consensus 134 vpgSFy~~lfp~~s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 213 (366)
+-+.|-+.+|+++++|++.+.-+.+..++. .++|+++ .+.+
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~~---------------------------~~~y~Ei------------~rv~ 205 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPDL---------------------------EKVYAEI------------YRVL 205 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCcH---------------------------HHHHHHH------------hccc
Confidence 335788888999999999998888876551 2344433 3459
Q ss_pred ccCceEEEEeecC
Q 017747 214 VVGGRMVLILLGR 226 (366)
Q Consensus 214 ~~GG~lvl~~~g~ 226 (366)
+|||+.+..-..+
T Consensus 206 kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 206 KPGGLFIVKEWIK 218 (364)
T ss_pred CCCceEEeHHHHH
Confidence 9999999875544
No 193
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=66.84 E-value=18 Score=34.61 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=38.1
Q ss_pred ceEEEeecCCCCcchHHHHHHH------------HHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHH
Q 017747 51 TINIADLGCSSGPNTLAIIKDF------------VQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVF 107 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~i------------i~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 107 (366)
.-+|+++|+|.|..|..+++.. +..|+++. .....++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~-----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF-----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-----ccccceEEEeCchhcCcchhhc
Confidence 5899999999999999888754 33444432 1234599999998777877653
No 194
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.43 E-value=4 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=14.9
Q ss_pred CceEEEeecCCCCcchH
Q 017747 50 KTINIADLGCSSGPNTL 66 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (366)
+..+++|+|||.|-.++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 56889999999999885
No 195
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=65.73 E-value=7.3 Score=39.66 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
..+|+|+|||+|..++.
T Consensus 293 ~~~vLDl~cG~G~~sl~ 309 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLP 309 (431)
T ss_pred CCEEEEcCCCcCHHHHH
Confidence 47899999999999985
No 196
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=65.48 E-value=8.6 Score=35.16 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=12.5
Q ss_pred eEEEeecCCCCcchH
Q 017747 52 INIADLGCSSGPNTL 66 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~ 66 (366)
-+|+|||||.|..-.
T Consensus 69 ~~VlDLGtGNG~~L~ 83 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLF 83 (227)
T ss_pred cceeeccCCchHHHH
Confidence 399999999998644
No 197
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=65.04 E-value=20 Score=34.08 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.4
Q ss_pred ceEEEeecCCCCcchHHHHHHH
Q 017747 51 TINIADLGCSSGPNTLAIIKDF 72 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~i 72 (366)
-.+|+|-|.|+|..|..+...+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHh
Confidence 4899999999999998755444
No 198
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=64.07 E-value=87 Score=31.65 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhh
Q 017747 205 FLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGR 282 (366)
Q Consensus 205 FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~ 282 (366)
.+..-..-+.|||.||+.=.|.+- =|+.+..|=..+.+.|-.+.|. +|+.-+..|++-+-+-+|+-
T Consensus 207 ~ie~lw~l~~~gg~lVivErGtp~----------Gf~~I~rAR~~ll~~~~~~~e~--~~~ahiiAPCPH~~~CPl~v 272 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVERGTPA----------GFERILRARQILLAPGNFPDEF--NYFAHIIAPCPHQRKCPLQV 272 (484)
T ss_pred HHHHHHHhccCCCeEEEEeCCCch----------hHHHHHHHHHHHhcCCCCcccc--ccceeeeccCCCCCCCCccC
Confidence 345556788999999998655542 3778888888888888777664 67777777888777777664
No 199
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=63.58 E-value=27 Score=32.54 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=26.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
.++-+|+++|.+.|+-|+.+...+ +...+++-.|...
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l---------------~~~g~l~tiE~~~ 94 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL---------------PDDGRLTTIERDE 94 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC---------------CCCCeEEEEeCCH
Confidence 367899999999999998643332 2146788888765
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=62.32 E-value=8 Score=38.56 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhh-----cCCCceEEEeecCCCCcchHH
Q 017747 35 ITLEALQQLYLE-----IDPKTINIADLGCSSGPNTLA 67 (366)
Q Consensus 35 ~l~~ai~~l~~~-----~~~~~~~IaDlGCs~G~ns~~ 67 (366)
-|++++..+... ......+++|+|||+|.-|..
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~ 228 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQ 228 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHH
Confidence 456665544321 123458999999999999964
No 201
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.17 E-value=8.2 Score=36.47 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=27.8
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCc
Q 017747 48 DPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTND 102 (366)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ND 102 (366)
..+..+++|+|+|||..|.- +.++ | . -.||.-|.-.|.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~--------lLq~-----g---A-k~VyavDVG~~Q 114 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDV--------LLQR-----G---A-KHVYAVDVGYGQ 114 (245)
T ss_pred CCCCCEEEEecCCCccHHHH--------HHHc-----C---C-cEEEEEEccCCc
Confidence 45678999999999999963 2221 2 1 678999988773
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=60.35 E-value=12 Score=37.72 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=41.4
Q ss_pred CCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcce
Q 017747 13 TGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFH 92 (366)
Q Consensus 13 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~ 92 (366)
.+...|+-|...-+.+...+...+... ....+|+|++||+|..++.+.... +..+
T Consensus 29 ~~~vFyqp~~~~nrdl~~~v~~~~~~~---------~~~~~vLDl~aGsG~~~l~~a~~~----------------~~~~ 83 (382)
T PRK04338 29 WAPVFYNPRMELNRDISVLVLRAFGPK---------LPRESVLDALSASGIRGIRYALET----------------GVEK 83 (382)
T ss_pred CCCeeeCccccchhhHHHHHHHHHHhh---------cCCCEEEECCCcccHHHHHHHHHC----------------CCCE
Confidence 355688888887777666555444210 123689999999999998632211 1157
Q ss_pred EEecCCCC
Q 017747 93 FYLNDLPT 100 (366)
Q Consensus 93 v~~nDLp~ 100 (366)
|+.+|+-.
T Consensus 84 V~a~Din~ 91 (382)
T PRK04338 84 VTLNDINP 91 (382)
T ss_pred EEEEeCCH
Confidence 99999854
No 203
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=59.78 E-value=13 Score=37.16 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=14.3
Q ss_pred eEEEeecCCCCcchHH
Q 017747 52 INIADLGCSSGPNTLA 67 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~ 67 (366)
.+++|++||+|..|+.
T Consensus 208 ~~vLDl~~G~G~~sl~ 223 (362)
T PRK05031 208 GDLLELYCGNGNFTLA 223 (362)
T ss_pred CeEEEEeccccHHHHH
Confidence 4699999999999984
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=56.53 E-value=15 Score=36.59 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=14.2
Q ss_pred eEEEeecCCCCcchHH
Q 017747 52 INIADLGCSSGPNTLA 67 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~ 67 (366)
.+|+|+|||+|..|+.
T Consensus 199 ~~vlDl~~G~G~~sl~ 214 (353)
T TIGR02143 199 GDLLELYCGNGNFSLA 214 (353)
T ss_pred CcEEEEeccccHHHHH
Confidence 3699999999999985
No 205
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=55.28 E-value=6.8 Score=32.57 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=13.9
Q ss_pred CceEEEeecCCCCcchH
Q 017747 50 KTINIADLGCSSGPNTL 66 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (366)
++...+|+|||.|-..-
T Consensus 58 ~~~~FVDlGCGNGLLV~ 74 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVY 74 (112)
T ss_pred CCCceEEccCCchHHHH
Confidence 46789999999997654
No 206
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=55.10 E-value=21 Score=32.85 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCcchHHH
Q 017747 50 KTINIADLGCSSGPNTLAI 68 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~ 68 (366)
+-.+|+|+||+.|.=|.-.
T Consensus 69 p~~~VlD~G~APGsWsQVa 87 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVA 87 (232)
T ss_pred CCCEEEEccCCCChHHHHH
Confidence 3589999999999988643
No 207
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=54.95 E-value=11 Score=31.29 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEe
Q 017747 199 QEDFTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 199 ~~D~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
...+.+|++.-++-|+|||+|++.-
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4578899999999999999999984
No 208
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=53.63 E-value=7.8 Score=32.45 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEeecCCCCcchHH
Q 017747 53 NIADLGCSSGPNTLA 67 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~ 67 (366)
+|+|+||+.|..|+.
T Consensus 1 ~vlDiGa~~G~~~~~ 15 (143)
T TIGR01444 1 VVIDVGANIGDTSLY 15 (143)
T ss_pred CEEEccCCccHHHHH
Confidence 589999999998875
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=52.20 E-value=19 Score=35.09 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=24.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCC
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLP 99 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp 99 (366)
..+++|.+||.|.-|..+++.+ ++...|+.-|.-
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~---------------~~~g~VigiD~D 53 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL---------------GPKGRLIAIDRD 53 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC---------------CCCCEEEEEcCC
Confidence 3689999999999998643322 234667777773
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=50.98 E-value=1e+02 Score=29.58 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=31.5
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHH
Q 017747 48 DPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHR 115 (366)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~ 115 (366)
.++|-+|+=+|-|.|.... +..+ .|+ +|.+.|+-..--...-+-+|.+..
T Consensus 70 h~~pk~VLIiGGGDGg~~R-----------EvLk------h~~-~v~mVeID~~Vv~~~k~~lP~~~~ 119 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAH-----------QLFK------YDT-HVDFVQADEKILDSFISFFPHFHE 119 (262)
T ss_pred CCCCCeEEEEcCCchHHHH-----------HHHC------cCC-eeEEEECCHHHHHHHHHHCHHHHH
Confidence 4788999999999998643 3321 233 888888865333333333665544
No 211
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=50.58 E-value=4.3 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.2
Q ss_pred ceEEEeecCCCCcchHH
Q 017747 51 TINIADLGCSSGPNTLA 67 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (366)
..-+||+|||=|...+.
T Consensus 61 kvefaDIGCGyGGLlv~ 77 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMK 77 (249)
T ss_pred cceEEeeccCccchhhh
Confidence 36799999999988764
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=49.05 E-value=38 Score=31.98 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=17.2
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017747 50 KTINIADLGCSSGPNTLAII 69 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (366)
+...|+|+|.|.|..|..+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~ 49 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELL 49 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHH
T ss_pred CCCEEEEeCCCCccchhhHh
Confidence 46899999999999998654
No 213
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=48.90 E-value=49 Score=35.68 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHH
Q 017747 49 PKTINIADLGCSSGPNTLAIIKDF 72 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~i 72 (366)
.+.++|+|+|=|+|.|++..++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~ 79 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAF 79 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHH
Confidence 346999999999999999877654
No 214
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=46.11 E-value=22 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHH
Q 017747 239 FWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEV 280 (366)
Q Consensus 239 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i 280 (366)
+...+..+|+.|...|.|+.++.|....|++.|+.. .+.+|
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqq-ARrLL 52 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQ-ARRLL 52 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHHH-HHHHH
Confidence 345688899999999999999999999999988754 34433
No 215
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=44.91 E-value=13 Score=32.97 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.4
Q ss_pred EEEeecCCCCcchHHH
Q 017747 53 NIADLGCSSGPNTLAI 68 (366)
Q Consensus 53 ~IaDlGCs~G~ns~~~ 68 (366)
+|+|.-||.|.||+.+
T Consensus 2 ~vlD~fcG~GGNtIqF 17 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF 17 (163)
T ss_dssp EEEETT-TTSHHHHHH
T ss_pred EEEEeccCcCHHHHHH
Confidence 6899999999999964
No 216
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=43.06 E-value=2.2e+02 Score=28.37 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceE
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVY 130 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f 130 (366)
..+|+|+=++-|.=|..+ .... ......|+.+|...+-...|...+.. .| ..++=
T Consensus 157 ge~VlD~cAAPGGKTthl--------a~~~------~~~~~iV~A~D~~~~Rl~~l~~nl~R--------lG---~~nv~ 211 (355)
T COG0144 157 GERVLDLCAAPGGKTTHL--------AELM------ENEGAIVVAVDVSPKRLKRLRENLKR--------LG---VRNVI 211 (355)
T ss_pred cCEEEEECCCCCCHHHHH--------HHhc------CCCCceEEEEcCCHHHHHHHHHHHHH--------cC---CCceE
Confidence 489999999999999753 2221 12236689999987655555443332 12 12322
Q ss_pred EeccCCCcccccCCCC-cccEEEcccccccccCCCCcccccccCCCcccc-EEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017747 131 IAGYPGSFYGRLFPNN-SLHFIHSSNSLHWLSKVPPTLYNEMGESINKGN-IYISESSPSAVSKAYFKQFQEDFTLFLRS 208 (366)
Q Consensus 131 ~~~vpgSFy~~lfp~~-s~~~~~S~~alhWls~~p~~~~~~~~~~~nkg~-i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 208 (366)
+.-..++.+....+.. .+|-+. =+.||.-.. .+.|.- +.-.. ++..+.+ ..+==..+|..
T Consensus 212 ~~~~d~~~~~~~~~~~~~fD~iL--------lDaPCSg~G----~irr~Pd~~~~~-~~~~i~~-----l~~lQ~~iL~~ 273 (355)
T COG0144 212 VVNKDARRLAELLPGGEKFDRIL--------LDAPCSGTG----VIRRDPDVKWRR-TPEDIAE-----LAKLQKEILAA 273 (355)
T ss_pred EEecccccccccccccCcCcEEE--------ECCCCCCCc----ccccCccccccC-CHHHHHH-----HHHHHHHHHHH
Confidence 2222223333333333 366553 345654322 000000 00000 1111211 11222457788
Q ss_pred HHHHhccCceEEEEeecCCC
Q 017747 209 RSEELVVGGRMVLILLGRIG 228 (366)
Q Consensus 209 Ra~EL~~GG~lvl~~~g~~~ 228 (366)
=.+-|||||+||-+++....
T Consensus 274 a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 274 ALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred HHHhcCCCCEEEEEccCCch
Confidence 88889999999999876644
No 217
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=42.96 E-value=1.5e+02 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 017747 204 LFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 204 ~FL~~Ra~EL~~GG~lvl~~ 223 (366)
.|++...+-|+|||.+++..
T Consensus 172 ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 172 EFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEEc
Confidence 56788899999999999998
No 218
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=42.62 E-value=58 Score=31.75 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEEeecC
Q 017747 194 YFKQFQEDFTLFLRSRSEELVVGGRMVLILLGR 226 (366)
Q Consensus 194 y~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~ 226 (366)
+..+=-..+..+|..-.+-|+|||+|++..+-.
T Consensus 207 ~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 207 EVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 344556779999999999999999999987644
No 219
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=42.16 E-value=32 Score=36.04 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=28.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
...+|+|.|||+|...+.++..+.+ . . +...-+.+++..|+-.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~--~--~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I--N--YFKEVELNIYFADIDK 73 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c--C--CcccceeeeeeechhH
Confidence 4689999999999998776555421 0 0 1111247788888754
No 220
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=41.92 E-value=19 Score=33.07 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.0
Q ss_pred CceEEEeecCCCCcchHHH
Q 017747 50 KTINIADLGCSSGPNTLAI 68 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~ 68 (366)
++-+|+++||++|+-|+.+
T Consensus 45 ~~k~vLEIGt~~GySal~l 63 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWL 63 (205)
T ss_dssp T-SEEEEESTTTSHHHHHH
T ss_pred CCceEEEeccccccHHHHH
Confidence 4789999999999999864
No 221
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.22 E-value=19 Score=32.75 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCccchhhhcccCccccCCCHHH
Q 017747 242 LLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEE 275 (366)
Q Consensus 242 ~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eE 275 (366)
.+.+.++.||++|+|.-|++.+-|+=|-|||.+-
T Consensus 31 ~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~ 64 (188)
T PF03962_consen 31 SVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAK 64 (188)
T ss_pred hHHHHHHHHhccccchhhhccCeeEEEecChHHH
Confidence 6899999999999999999999999999998654
No 222
>PRK11524 putative methyltransferase; Provisional
Probab=40.33 E-value=55 Score=31.34 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccCceEEEEe
Q 017747 202 FTLFLRSRSEELVVGGRMVLIL 223 (366)
Q Consensus 202 ~~~FL~~Ra~EL~~GG~lvl~~ 223 (366)
+..+|..-.+-|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888899999999999863
No 223
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=38.76 E-value=16 Score=34.78 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCC
Q 017747 34 HITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPT 100 (366)
Q Consensus 34 ~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ 100 (366)
|.|++....+... .+.+-+|+|+|||-=|.++..| ...|...++..|+-.
T Consensus 90 ~~Ld~fY~~if~~-~~~p~sVlDigCGlNPlalp~~----------------~~~~~a~Y~a~DID~ 139 (251)
T PF07091_consen 90 PNLDEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWM----------------PEAPGATYIAYDIDS 139 (251)
T ss_dssp GGHHHHHHHHCCC-S---SEEEEET-TTCHHHHHTT----------------TSSTT-EEEEEESBH
T ss_pred hhHHHHHHHHHhc-CCCCchhhhhhccCCceehhhc----------------ccCCCcEEEEEeCCH
Confidence 3344444333322 3458999999999988886421 124458889998853
No 224
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=36.38 E-value=54 Score=30.72 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHH
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEM 78 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~ 78 (366)
.+++|+|+|.|+|.+.. .|++.+++
T Consensus 18 ~~~~ivE~GaG~G~La~----diL~~l~~ 42 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLAR----DILRYLRK 42 (252)
T ss_dssp S-EEEEEES-TTSHHHH----HHHHHHCC
T ss_pred cCcEEEEECCCchHHHH----HHHHHHHH
Confidence 36999999999999865 44444443
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=35.49 E-value=32 Score=31.61 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhccCceEEE
Q 017747 198 FQEDFTLFLRSRSEELVVGGRMVL 221 (366)
Q Consensus 198 ~~~D~~~FL~~Ra~EL~~GG~lvl 221 (366)
|..|+..-|..+..+|++|-++|.
T Consensus 133 F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 133 FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 345667778888999999877653
No 226
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=35.30 E-value=29 Score=35.90 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCceEEEeecCCCCcchHHHHH
Q 017747 49 PKTINIADLGCSSGPNTLAIIK 70 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~ 70 (366)
..-.-++|+|.|||-.|++.+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred CceEEEEEccCCccHHHHHHHH
Confidence 3446689999999999998654
No 227
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=34.63 E-value=31 Score=31.12 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCccchhhhcccCccccCCCH
Q 017747 239 FWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSK 273 (366)
Q Consensus 239 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~ 273 (366)
+...+.+.+++||++|+++-|+..+-|+=|-|||.
T Consensus 41 Vl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 41 VLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 34568999999999999999999999999999864
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.87 E-value=97 Score=28.64 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.1
Q ss_pred CCceEEEeecCCCCcchHH
Q 017747 49 PKTINIADLGCSSGPNTLA 67 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~ 67 (366)
.+..+|+||||+.|.=|..
T Consensus 44 ~~~~~ViDLGAAPGgWsQv 62 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQV 62 (205)
T ss_pred cCCCEEEEcCCCCCcHHHH
Confidence 3468999999999999864
No 229
>PLN02476 O-methyltransferase
Probab=31.38 E-value=53 Score=31.74 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.7
Q ss_pred CceEEEeecCCCCcchHHH
Q 017747 50 KTINIADLGCSSGPNTLAI 68 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~ 68 (366)
++-+|+|+||++|+-|+.+
T Consensus 118 ~ak~VLEIGT~tGySal~l 136 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAV 136 (278)
T ss_pred CCCeEEEecCCCCHHHHHH
Confidence 5789999999999999864
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=30.84 E-value=54 Score=33.04 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=42.9
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceE
Q 017747 14 GPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHF 93 (366)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v 93 (366)
+...||-.+.+-|.+.-.+.....+... ....++|+|+.||+|.-++...+++ ..--+|
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e~---------------~ga~~V 72 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHEI---------------EGVREV 72 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhhC---------------CCCCEE
Confidence 4568998888888876554444333210 1124899999999999998643222 111579
Q ss_pred EecCCCC
Q 017747 94 YLNDLPT 100 (366)
Q Consensus 94 ~~nDLp~ 100 (366)
++||+-.
T Consensus 73 v~nD~n~ 79 (374)
T TIGR00308 73 FANDINP 79 (374)
T ss_pred EEEeCCH
Confidence 9999854
No 231
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=30.26 E-value=51 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCce
Q 017747 191 SKAYFKQFQEDFTLFLRSRSEELVVGGR 218 (366)
Q Consensus 191 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 218 (366)
.+.+++-|..||..++......|+.-|.
T Consensus 12 ~~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 12 CEEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 3677888899999999999999998775
No 232
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.75 E-value=41 Score=21.19 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.3
Q ss_pred HHHHHHHHcCccchhhhcc
Q 017747 245 RSLAILVSQGEIEKEKLVA 263 (366)
Q Consensus 245 ~al~~mv~eG~i~~e~~d~ 263 (366)
..|.+|.+.|.|+++++..
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4577888999999998763
No 233
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=28.88 E-value=54 Score=23.25 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCccchhh
Q 017747 241 ELLSRSLAILVSQGEIEKEK 260 (366)
Q Consensus 241 ~~l~~al~~mv~eG~i~~e~ 260 (366)
..|.++|.+|+.+|.|+++-
T Consensus 13 ~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHcCCCCHHH
Confidence 47999999999999998863
No 234
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=28.34 E-value=1.7e+02 Score=28.56 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCceEEEeecCCCCcchHHHHHH------------HHHHHHHHhhhhhcCCCCcceEEecCCCCCc
Q 017747 49 PKTINIADLGCSSGPNTLAIIKD------------FVQTVEMTSREILQNPAPEFHFYLNDLPTND 102 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~------------ii~~l~~~~~~~~~~~~p~~~v~~nDLp~ND 102 (366)
..+-+|+++|-|||..|..+++. .+..|.++.+.. +-...+||++.|.-..|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt--p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT--PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC--CccceeeEEecccccCC
Confidence 35789999999999999988764 455666654321 11235888888875555
No 235
>PHA03297 envelope glycoprotein L; Provisional
Probab=28.28 E-value=5.2 Score=34.89 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=37.6
Q ss_pred CCCceEEEeecCCCCcch------HHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchh
Q 017747 48 DPKTINIADLGCSSGPNT------LAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDF 113 (366)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns------~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~ 113 (366)
.++|-||++-.||+|+.- ...++++...+....-+. ..++||+-+.+.|-+..=+.-=|..+..+
T Consensus 37 ~gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~-~CsPPEaILW~~~~~~aYWvNPyvviqGL 107 (185)
T PHA03297 37 PGEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKA-HCNPPEAILWVDTPPKPVWVNPFAVIQGL 107 (185)
T ss_pred CCCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEec-CCCCceeEEEecCCCceEEecHHHHHHHH
Confidence 457899999999999853 223444444432221110 24688988888886543333333333333
No 236
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.00 E-value=83 Score=26.58 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHH
Q 017747 239 FWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEV 280 (366)
Q Consensus 239 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i 280 (366)
.|+.+-+-++.|+++|.++++..+ ......+++|+.+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 577788888899999999998764 677788999887654
No 237
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=27.87 E-value=25 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=8.5
Q ss_pred cccCCCHHHHHHHHh
Q 017747 267 HFYAPSKEEIEGEVG 281 (366)
Q Consensus 267 P~y~ps~eEv~~~i~ 281 (366)
|.+.||.+|+++.+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 678899999888654
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=27.47 E-value=1.3e+02 Score=27.83 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.0
Q ss_pred eEEEeecCCCCcchHHHH
Q 017747 52 INIADLGCSSGPNTLAII 69 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~ 69 (366)
-+++|||.|+|..|+...
T Consensus 34 d~~~DLGaGsGiLs~~Aa 51 (252)
T COG4076 34 DTFADLGAGSGILSVVAA 51 (252)
T ss_pred hceeeccCCcchHHHHHH
Confidence 567999999999998543
No 239
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.05 E-value=94 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHHhh
Q 017747 239 FWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGR 282 (366)
Q Consensus 239 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i~~ 282 (366)
+|+-+.+-++.|+++|.++++..+ ......+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 788899999999999999998654 55568999999888864
No 240
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=64 Score=28.59 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=34.0
Q ss_pred eccCCCCCcchHHHhhHHHHHHHHH-HHHHH---HHHHHHhhhhcCCC-ceEEEeecCCCCcchH
Q 017747 7 FHMAGGTGPTSYARNSSLQKKASDT-VKHIT---LEALQQLYLEIDPK-TINIADLGCSSGPNTL 66 (366)
Q Consensus 7 l~M~gg~g~~sY~~nS~~Q~~~~~~-~~~~l---~~ai~~l~~~~~~~-~~~IaDlGCs~G~ns~ 66 (366)
+...||.|-+.|+--+.+=+-+..+ ..|.+ .+.+.++..-...+ .-+.+|+|+|+|+--+
T Consensus 24 ~~aagg~gla~sav~a~fvaPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVl 88 (199)
T KOG4058|consen 24 LQAAGGSGLAASAVWALFVAPAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVL 88 (199)
T ss_pred HHhccchhHHHHHHHHHHhhHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeeh
Confidence 4456777777776665554444433 22222 33333433322223 3789999999999765
No 241
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=26.09 E-value=34 Score=33.16 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHH-HHhhhhcCCCceEEEeecCCCCcchH
Q 017747 31 TVKHITLEAL-QQLYLEIDPKTINIADLGCSSGPNTL 66 (366)
Q Consensus 31 ~~~~~l~~ai-~~l~~~~~~~~~~IaDlGCs~G~ns~ 66 (366)
.+.+.+.+++ ..+. -.--||+||||++|--.+
T Consensus 100 dl~~~l~~e~~~~~~----~~~k~vLELgCg~~Lp~i 132 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMS----FSGKRVLELGCGAALPGI 132 (282)
T ss_pred HHHHHHHHHhhhheE----ecCceeEecCCcccccch
Confidence 3566666665 2221 224689999999997765
No 242
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=66 Score=28.75 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCC
Q 017747 201 DFTLFLRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 201 D~~~FL~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
....+|+.+.+-|||||.|-+.++...
T Consensus 64 Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 64 EGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred HHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 456678999999999999999987543
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.84 E-value=39 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.5
Q ss_pred CCHHHHHHHHhhcCceEEeeEEEE
Q 017747 271 PSKEEIEGEVGREGSFKLDQLDMF 294 (366)
Q Consensus 271 ps~eEv~~~i~~~gsf~i~~~e~~ 294 (366)
....+++..+.+.| |.|.+-+.+
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv 125 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLV 125 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEE
Confidence 47889999999999 999777664
No 244
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=25.67 E-value=1.6e+02 Score=31.53 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=41.8
Q ss_pred EEEcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCCC-CCCCCchhHHHHH-------HH
Q 017747 180 IYISESSPSAVSK------AYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPD-HVDRGNSFFWELL-------SR 245 (366)
Q Consensus 180 i~~~~~s~~~v~~------ay~~Q~~~D~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~-~~~~~~~~~~~~l-------~~ 245 (366)
||+.+-+|++|.+ +|++||+||.--=|.|=.+ .|.++.+ |+-.. -.+|+.+ ..
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~fts-pvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTFTS-PVMYKEVEARESVPDL 456 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccccC-hhHHHHHHhhhcccHH
Confidence 7788888888776 4899999985332322211 3443332 33211 1233322 12
Q ss_pred HHHHHHHcCccchhhhccc
Q 017747 246 SLAILVSQGEIEKEKLVAY 264 (366)
Q Consensus 246 al~~mv~eG~i~~e~~d~f 264 (366)
-.+.|+++|++++|++-.+
T Consensus 457 ya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred HHHHHHhcccccHHHHHHH
Confidence 3567889999999887544
No 245
>PF14904 FAM86: Family of unknown function
Probab=24.83 E-value=73 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.2
Q ss_pred hhhHHHhhhhHHHhhcCCCcchHHHHHHHHHHH
Q 017747 312 ARTVRAIQESTIIHHFGIGEGVLDNLFEIYGRL 344 (366)
Q Consensus 312 ~~~~Ra~~e~~l~~~~g~~~~i~d~lf~r~~~~ 344 (366)
.++.|+|...+|+.+=.-..+..|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 567899999999864432289999999999864
No 246
>smart00400 ZnF_CHCC zinc finger.
Probab=24.15 E-value=66 Score=22.75 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=16.0
Q ss_pred eEEEeecCCCCcchHHHHHHH
Q 017747 52 INIADLGCSSGPNTLAIIKDF 72 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~i 72 (366)
-..=++||+.|.+.+-++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999988665544
No 247
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=24.03 E-value=2.3e+02 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCC--CCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecC
Q 017747 26 KKASDTVKHITLEALQQLYLEIDPKTINIADLGCS--SGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLND 97 (366)
Q Consensus 26 ~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs--~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nD 97 (366)
+.++..-...|..+++-+... -..-..+|+||| |-.|+-.+.+.+ .|+..|.+.|
T Consensus 46 ~~~ar~nR~Fl~RaVr~la~~--~GIrQFLDlGsGlPT~~nvHevAq~~---------------~P~aRVVYVD 102 (267)
T PF04672_consen 46 REAARANRAFLRRAVRYLAEE--AGIRQFLDLGSGLPTAGNVHEVAQRV---------------APDARVVYVD 102 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--T---EEEEET--S--SS-HHHHHHHH----------------TT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCcceEEEcccCCCCCCCHhHHHHhh---------------CCCceEEEEC
No 248
>PRK13699 putative methylase; Provisional
Probab=23.74 E-value=91 Score=28.97 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccCceEEEE
Q 017747 203 TLFLRSRSEELVVGGRMVLI 222 (366)
Q Consensus 203 ~~FL~~Ra~EL~~GG~lvl~ 222 (366)
..+|..-.+.|||||.|++.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 46777888999999988864
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=23.73 E-value=6.1e+02 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=28.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHH
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVF 107 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 107 (366)
..||+|.=|+.|.-|-. |.++-+ . +=.+|.||--.|--..|-
T Consensus 242 gERIlDmcAAPGGKTt~-----IAalMk---n-------~G~I~AnD~n~~r~~~l~ 283 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTH-----IAALMK---N-------TGVIFANDSNENRLKSLK 283 (460)
T ss_pred CCeecchhcCCCchHHH-----HHHHHc---C-------CceEEecccchHHHHHHH
Confidence 48999999999999843 222222 1 267899998665444443
No 250
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=22.90 E-value=5.3e+02 Score=28.18 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.0
Q ss_pred ceEEEeecCCCCcchHHH
Q 017747 51 TINIADLGCSSGPNTLAI 68 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~ 68 (366)
...++|-+||+|-..+..
T Consensus 191 ~~~l~DP~CGSGTilIEA 208 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEA 208 (702)
T ss_pred CCeEEccCCCccHHHHHH
Confidence 478999999999877654
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=22.54 E-value=2e+02 Score=30.22 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=32.2
Q ss_pred CCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCcchHH
Q 017747 10 AGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIADLGCSSGPNTLA 67 (366)
Q Consensus 10 ~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~l~~~~~~~~~~IaDlGCs~G~ns~~ 67 (366)
.+|.....|.+....=++.+..-..++.-.+. ....-.|.|...+.|..+..
T Consensus 331 ~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~------~~~iRNVMDMnAg~GGFAAA 382 (506)
T PF03141_consen 331 IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIK------WGRIRNVMDMNAGYGGFAAA 382 (506)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhccccc------ccceeeeeeecccccHHHHH
Confidence 34555666766666656555555544432221 23445689999999999864
No 252
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=21.78 E-value=82 Score=30.29 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=28.3
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHH
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSV 106 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l 106 (366)
..+|+|+-+|.|.-|..+ .+.. ...-.++.+|...+-...|
T Consensus 86 ~~~VLD~CAapGgKt~~l--------a~~~-------~~~g~i~A~D~~~~Rl~~l 126 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHL--------AELM-------GNKGEIVANDISPKRLKRL 126 (283)
T ss_dssp TSEEEESSCTTSHHHHHH--------HHHT-------TTTSEEEEEESSHHHHHHH
T ss_pred cccccccccCCCCceeee--------eecc-------cchhHHHHhccCHHHHHHH
Confidence 477999999999999753 2321 1137899999976544443
No 253
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=1.1e+02 Score=27.20 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCccchhhhcccCccccCCCHHHHHHHH----hhcC
Q 017747 240 WELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEV----GREG 284 (366)
Q Consensus 240 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~eEv~~~i----~~~g 284 (366)
-+.+..+|.+|.++|+++.-.-..-..-+|.+|++|....| .+.|
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg 116 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG 116 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 45789999999999998765444566778999999987765 4566
No 254
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=21.67 E-value=69 Score=29.32 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=25.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHH
Q 017747 50 KTINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSV 106 (366)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l 106 (366)
...+|+|+-||.|+.|+.+ .+. ...-.|+.+|+-..-+..|
T Consensus 101 ~~e~VlD~faGIG~f~l~~--------ak~--------~~~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPI--------AKH--------GKAKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp TT-EEEETT-TTTTTHHHH--------HHH--------T-SSEEEEEES-HHHHHHH
T ss_pred cceEEEEccCCccHHHHHH--------hhh--------cCccEEEEecCCHHHHHHH
Confidence 3589999999999999863 221 0126799999865433333
No 255
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=21.28 E-value=1.1e+02 Score=26.19 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017747 187 PSAVSKAYFKQFQEDFTLFLRSRSEE 212 (366)
Q Consensus 187 ~~~v~~ay~~Q~~~D~~~FL~~Ra~E 212 (366)
|..+.+.|.+||++||...|+.|..+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34578999999999999999988643
No 256
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=21.22 E-value=2.7e+02 Score=27.25 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecCCCCCchhHHHhhCchhHHHHhhhcCCCCCCceEE
Q 017747 52 INIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRNERGGGSSPSVYI 131 (366)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 131 (366)
...+=-|+|||.....+-.. |++ ..|.++++..|=..-.+.+- | ..+.-+
T Consensus 170 ~d~fVagvGTGGTitGvar~----Lk~--------~~p~i~iv~vdP~~S~~~~~---------------G---~g~~~i 219 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARY----LKE--------RNPNVRIVAVDPEGSVLLSG---------------G---EGPHKI 219 (300)
T ss_pred CCEEEEeCCcchhHHHHHHH----HHh--------hCCCcEEEEECCCCCcccCC---------------C---CCCccc
Confidence 55566799999976542222 223 25669999999542111000 0 013345
Q ss_pred eccCCCcccccCCCCcccEEEc------ccccccccCCCCcccccccCCCccccEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 017747 132 AGYPGSFYGRLFPNNSLHFIHS------SNSLHWLSKVPPTLYNEMGESINKGNIYISESSPSAVSKAYFKQFQEDFTLF 205 (366)
Q Consensus 132 ~~vpgSFy~~lfp~~s~~~~~S------~~alhWls~~p~~~~~~~~~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 205 (366)
-+++.+|.-..+-..-+|-++. ..+.+||.+.. -+.+..||-..+..|.
T Consensus 220 ~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~e--------------GilvG~SsGA~~~aa~----------- 274 (300)
T COG0031 220 EGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREE--------------GLLVGISSGAALAAAL----------- 274 (300)
T ss_pred CCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHh--------------CeeecccHHHHHHHHH-----------
Confidence 5777777654444444554442 22333433321 2444445444443333
Q ss_pred HHHHHHHhccCceEEEEeecCC
Q 017747 206 LRSRSEELVVGGRMVLILLGRI 227 (366)
Q Consensus 206 L~~Ra~EL~~GG~lvl~~~g~~ 227 (366)
..++++.+|+.+|+.++-..
T Consensus 275 --~~a~~~~~g~~IVti~pD~G 294 (300)
T COG0031 275 --KLAKELPAGKTIVTILPDSG 294 (300)
T ss_pred --HHHHhcCCCCeEEEEECCCc
Confidence 34889999999998886544
No 257
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=20.93 E-value=1.2e+02 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=12.2
Q ss_pred CCceEEEeecCCCCcch
Q 017747 49 PKTINIADLGCSSGPNT 65 (366)
Q Consensus 49 ~~~~~IaDlGCs~G~ns 65 (366)
..|-++|=+|||+|+--
T Consensus 37 ~GpK~VLViGaStGyGL 53 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGL 53 (78)
T ss_dssp TS-SEEEEES-SSHHHH
T ss_pred CCCceEEEEecCCcccH
Confidence 34678999999999853
No 258
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=20.84 E-value=7.2e+02 Score=26.73 Aligned_cols=114 Identities=15% Similarity=0.236 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCCCCCCCCCchhHHHHHHHHHHHHHHcCccchhhhcccC----ccccC-----CC
Q 017747 202 FTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFFWELLSRSLAILVSQGEIEKEKLVAYH----AHFYA-----PS 272 (366)
Q Consensus 202 ~~~FL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~----~P~y~-----ps 272 (366)
|..||+.|... ...|.+.|.+..|.... .+ +..+-|++++++|.++.-. ..|. -..|. -.
T Consensus 468 frsflq~r~~~-~~~~~~~LffG~R~~~~------D~---lY~~El~~~~~~g~l~~l~-~afSRd~~~k~YVQ~~l~e~ 536 (600)
T PRK10953 468 FRAFMQQRAAD-GAPGKNWLFFGNPHFTE------DF---LYQVEWQRYVKEGLLTRID-LAWSRDQKEKIYVQDKLREQ 536 (600)
T ss_pred HHHHHHHHHHc-CCCCCeEEEeeccCCcc------ch---hHHHHHHHHHHcCCcceEE-EEECCCCCCCCcHHHHHHHH
Confidence 56677777653 34578888776665221 12 3467788888899775411 1111 11221 01
Q ss_pred HHHHHHHHhhcCceEEeeEEEEeeccCCCCcccchhhhHhhhHHHhhhhHHHhhcCCCcchHHHHHHHHH
Q 017747 273 KEEIEGEVGREGSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYG 342 (366)
Q Consensus 273 ~eEv~~~i~~~gsf~i~~~e~~~~~~~~~~d~~~~~~~~~~~~Ra~~e~~l~~~~g~~~~i~d~lf~r~~ 342 (366)
.+|+.+.+++.+. .+-+. + +..|+.-++.....++..|=|.+++-.++..++++
T Consensus 537 ~~~l~~~l~~ga~-------~YVCG-----~----~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~ 590 (600)
T PRK10953 537 GAELWRWINDGAH-------IYVCG-----D----ANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 590 (600)
T ss_pred HHHHHHHHHCCcE-------EEEEC-----C----CccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2233334432221 12232 1 34567777777777777765544554455554443
No 259
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=71 Score=32.93 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=12.3
Q ss_pred CCceEEEeecCCCC
Q 017747 49 PKTINIADLGCSSG 62 (366)
Q Consensus 49 ~~~~~IaDlGCs~G 62 (366)
..|..-+|+||+.|
T Consensus 210 ~~p~~f~d~gcgng 223 (529)
T KOG3790|consen 210 SKPNKFVDIGCGNG 223 (529)
T ss_pred ccccchhccccCch
Confidence 36788999999999
No 260
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=1.2e+02 Score=28.10 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=22.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCcceEEecC
Q 017747 51 TINIADLGCSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLND 97 (366)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~l~~~~~~~~~~~~p~~~v~~nD 97 (366)
..+++|+|+|-|-=.+.+. | ..|+.+|.+-|
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I--------------~~p~~~vtLle 98 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--I--------------AFPDLKVTLLE 98 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--H--------------hccCCcEEEEc
Confidence 5799999999998877532 1 14557777777
Done!