Query 017748
Match_columns 366
No_of_seqs 149 out of 1606
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.3E-34 5E-39 247.9 27.6 222 103-332 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 2.2E-15 4.7E-20 122.3 18.7 149 202-356 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.7 1.9E-14 4.1E-19 128.4 24.3 307 1-337 1-353 (373)
4 PF08268 FBA_3: F-box associat 99.6 4.7E-14 1E-18 109.7 14.2 112 202-318 1-118 (129)
5 PHA02713 hypothetical protein; 99.6 7E-13 1.5E-17 128.0 21.9 197 118-337 321-540 (557)
6 KOG4441 Proteins containing BT 99.5 2.5E-12 5.4E-17 123.8 19.5 198 118-339 350-555 (571)
7 KOG4441 Proteins containing BT 99.5 7.6E-12 1.6E-16 120.5 20.0 200 118-341 302-510 (571)
8 PHA03098 kelch-like protein; P 99.4 2.1E-11 4.5E-16 118.3 21.8 199 118-337 312-518 (534)
9 PHA02713 hypothetical protein; 99.4 2.4E-11 5.3E-16 117.4 21.2 202 118-341 273-500 (557)
10 PHA02790 Kelch-like protein; P 99.3 2.1E-10 4.6E-15 109.2 21.2 183 118-337 288-477 (480)
11 PLN02153 epithiospecifier prot 99.3 2.6E-09 5.7E-14 97.6 25.9 209 117-337 50-291 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.3 3.4E-09 7.4E-14 97.1 24.1 209 117-341 29-309 (346)
13 PLN02193 nitrile-specifier pro 99.2 3.8E-09 8.2E-14 100.4 23.3 204 118-337 194-417 (470)
14 PRK14131 N-acetylneuraminic ac 99.2 1E-08 2.2E-13 94.9 23.3 224 103-341 34-331 (376)
15 TIGR03548 mutarot_permut cycli 99.2 6.7E-09 1.4E-13 94.2 21.6 200 118-337 40-286 (323)
16 PHA02790 Kelch-like protein; P 99.1 5.1E-09 1.1E-13 99.8 18.3 148 172-340 285-433 (480)
17 PHA03098 kelch-like protein; P 99.1 7.8E-09 1.7E-13 100.4 19.3 193 122-337 268-471 (534)
18 PF12937 F-box-like: F-box-lik 99.0 1.4E-10 3E-15 72.8 1.7 43 4-46 1-43 (47)
19 PLN02153 epithiospecifier prot 99.0 8.1E-08 1.8E-12 87.8 19.6 157 174-340 50-234 (341)
20 PLN02193 nitrile-specifier pro 98.9 1.7E-07 3.8E-12 89.1 20.7 198 119-337 139-358 (470)
21 PF00646 F-box: F-box domain; 98.9 3.1E-10 6.6E-15 71.7 -0.0 46 3-48 2-47 (48)
22 TIGR03548 mutarot_permut cycli 98.8 1.6E-06 3.5E-11 78.6 21.0 139 117-267 88-233 (323)
23 PRK14131 N-acetylneuraminic ac 98.8 3.8E-06 8.3E-11 77.8 23.0 160 174-337 189-375 (376)
24 smart00256 FBOX A Receptor for 98.7 3.4E-09 7.3E-14 64.4 1.0 39 7-45 1-39 (41)
25 TIGR03547 muta_rot_YjhT mutatr 98.7 2.5E-06 5.5E-11 78.2 18.9 161 174-340 29-237 (346)
26 KOG1230 Protein containing rep 98.4 1.6E-05 3.6E-10 70.7 14.8 218 117-342 98-351 (521)
27 KOG4693 Uncharacterized conser 98.3 5.3E-05 1.1E-09 63.8 15.0 185 101-297 82-288 (392)
28 KOG4693 Uncharacterized conser 98.2 9.5E-05 2.1E-09 62.3 13.8 225 106-344 33-289 (392)
29 KOG0379 Kelch repeat-containin 98.0 0.00077 1.7E-08 64.4 18.6 207 118-337 89-308 (482)
30 KOG0281 Beta-TrCP (transducin 97.9 0.00012 2.5E-09 63.8 10.7 43 4-46 75-121 (499)
31 KOG0379 Kelch repeat-containin 97.9 0.00074 1.6E-08 64.5 17.0 157 175-342 89-260 (482)
32 KOG2120 SCF ubiquitin ligase, 97.7 1.2E-05 2.7E-10 69.0 0.7 40 4-43 98-137 (419)
33 KOG1230 Protein containing rep 97.4 0.019 4E-07 51.9 17.3 119 173-294 97-224 (521)
34 PF13964 Kelch_6: Kelch motif 97.0 0.0019 4.1E-08 40.6 4.8 42 201-242 6-48 (50)
35 KOG2997 F-box protein FBX9 [Ge 96.9 0.00038 8.2E-09 60.3 0.9 46 4-49 107-157 (366)
36 PF02191 OLF: Olfactomedin-lik 96.7 0.11 2.3E-06 45.0 14.7 126 200-341 72-213 (250)
37 PF01344 Kelch_1: Kelch motif; 96.6 0.0052 1.1E-07 37.9 4.4 41 201-241 6-47 (47)
38 COG3055 Uncharacterized protei 96.3 0.063 1.4E-06 47.7 11.0 121 173-298 112-268 (381)
39 KOG0274 Cdc4 and related F-box 96.3 0.47 1E-05 46.0 18.0 42 4-45 108-149 (537)
40 smart00284 OLF Olfactomedin-li 96.3 0.18 3.9E-06 43.4 13.5 126 200-341 77-218 (255)
41 PF13360 PQQ_2: PQQ-like domai 96.2 0.71 1.5E-05 39.4 18.0 191 106-337 35-237 (238)
42 PF07646 Kelch_2: Kelch motif; 95.6 0.034 7.3E-07 34.7 4.7 39 201-239 6-46 (49)
43 PF13360 PQQ_2: PQQ-like domai 95.4 1.5 3.1E-05 37.4 16.3 143 175-340 4-150 (238)
44 PRK11138 outer membrane biogen 95.1 3 6.5E-05 38.9 20.3 113 200-341 250-364 (394)
45 PF07250 Glyoxal_oxid_N: Glyox 94.9 1.2 2.6E-05 38.3 13.4 170 173-358 45-222 (243)
46 TIGR03300 assembly_YfgL outer 94.8 3.4 7.3E-05 38.2 20.0 115 200-342 235-350 (377)
47 PRK11138 outer membrane biogen 94.6 4 8.7E-05 38.1 19.6 190 106-336 119-318 (394)
48 PF07893 DUF1668: Protein of u 94.4 1.5 3.2E-05 40.1 13.6 132 99-244 68-223 (342)
49 smart00612 Kelch Kelch domain. 94.2 0.078 1.7E-06 32.2 3.7 24 173-196 14-37 (47)
50 PF07893 DUF1668: Protein of u 94.0 2 4.2E-05 39.3 13.8 109 224-337 87-214 (342)
51 PF13418 Kelch_4: Galactose ox 93.7 0.1 2.2E-06 32.4 3.3 40 202-241 7-48 (49)
52 KOG0310 Conserved WD40 repeat- 93.5 3.3 7.3E-05 38.5 13.8 193 124-356 8-207 (487)
53 PF13964 Kelch_6: Kelch motif 93.1 0.15 3.3E-06 31.7 3.6 23 116-139 27-49 (50)
54 TIGR01640 F_box_assoc_1 F-box 92.7 4.8 0.0001 34.3 13.5 122 204-341 3-137 (230)
55 TIGR03074 PQQ_membr_DH membran 92.4 2.8 6.1E-05 42.6 13.1 126 198-340 186-354 (764)
56 TIGR03300 assembly_YfgL outer 92.4 8.9 0.00019 35.4 20.0 190 106-336 104-303 (377)
57 PF01344 Kelch_1: Kelch motif; 92.4 0.25 5.5E-06 30.1 3.9 24 170-193 24-47 (47)
58 smart00612 Kelch Kelch domain. 92.2 0.48 1E-05 28.6 5.0 35 209-244 2-37 (47)
59 PLN02772 guanylate kinase 92.2 0.92 2E-05 41.8 8.5 78 199-283 27-108 (398)
60 PF07762 DUF1618: Protein of u 92.2 1.2 2.6E-05 34.3 8.2 77 224-300 7-101 (131)
61 PF07646 Kelch_2: Kelch motif; 91.1 0.59 1.3E-05 28.9 4.5 43 251-295 5-48 (49)
62 PF10282 Lactonase: Lactonase, 90.9 13 0.00027 34.1 15.4 189 122-337 68-284 (345)
63 PF02897 Peptidase_S9_N: Proly 90.7 15 0.00032 34.5 19.2 148 174-337 252-411 (414)
64 COG1520 FOG: WD40-like repeat 90.5 10 0.00023 35.0 14.1 143 173-340 34-181 (370)
65 PF08450 SGL: SMP-30/Gluconola 90.4 11 0.00023 32.5 24.3 198 107-342 11-224 (246)
66 PF13415 Kelch_3: Galactose ox 90.2 1 2.2E-05 27.8 5.0 39 206-244 1-41 (49)
67 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.9 6.5 0.00014 38.3 12.5 120 200-337 63-196 (527)
68 KOG0647 mRNA export protein (c 89.5 5.6 0.00012 34.9 10.2 75 257-342 39-113 (347)
69 PF05096 Glu_cyclase_2: Glutam 89.0 15 0.00032 32.0 14.1 145 171-342 65-215 (264)
70 PRK11028 6-phosphogluconolacto 88.9 17 0.00037 32.8 15.5 140 173-331 11-157 (330)
71 KOG2055 WD40 repeat protein [G 88.2 22 0.00048 33.2 17.6 114 204-337 266-381 (514)
72 COG4257 Vgb Streptogramin lyas 88.2 12 0.00027 32.6 11.4 141 100-263 192-334 (353)
73 KOG3545 Olfactomedin and relat 88.1 7.9 0.00017 33.1 10.1 141 184-341 56-212 (249)
74 PF01011 PQQ: PQQ enzyme repea 87.5 1.6 3.5E-05 25.2 4.3 29 314-342 2-30 (38)
75 PF08450 SGL: SMP-30/Gluconola 87.4 18 0.00038 31.1 14.0 108 206-337 11-129 (246)
76 TIGR02658 TTQ_MADH_Hv methylam 87.3 24 0.00051 32.4 20.3 204 116-341 76-298 (352)
77 PF13418 Kelch_4: Galactose ox 86.7 1.2 2.6E-05 27.4 3.6 23 171-193 26-48 (49)
78 KOG4341 F-box protein containi 86.7 0.22 4.8E-06 45.5 0.3 37 6-42 74-110 (483)
79 COG3055 Uncharacterized protei 86.7 2.7 5.8E-05 37.8 6.8 90 175-268 59-157 (381)
80 PF10282 Lactonase: Lactonase, 86.2 27 0.00058 31.9 23.4 173 145-337 144-331 (345)
81 KOG0294 WD40 repeat-containing 85.4 26 0.00057 31.1 12.1 118 200-341 46-168 (362)
82 PF06433 Me-amine-dh_H: Methyl 85.2 13 0.00028 33.6 10.5 125 200-337 187-327 (342)
83 KOG4152 Host cell transcriptio 83.5 12 0.00025 35.6 9.6 127 153-283 210-363 (830)
84 PF05096 Glu_cyclase_2: Glutam 83.1 31 0.00067 30.1 13.3 113 205-340 54-167 (264)
85 smart00564 PQQ beta-propeller 82.1 4.7 0.0001 22.1 4.5 24 314-337 8-31 (33)
86 COG2706 3-carboxymuconate cycl 81.8 40 0.00086 30.5 15.7 119 206-340 155-285 (346)
87 PF13415 Kelch_3: Galactose ox 81.3 2.1 4.5E-05 26.4 3.0 26 171-196 16-41 (49)
88 PRK04043 tolB translocation pr 81.2 50 0.0011 31.2 13.5 98 224-337 214-316 (419)
89 PRK11028 6-phosphogluconolacto 80.0 45 0.00098 30.0 14.9 119 205-337 184-313 (330)
90 KOG1274 WD40 repeat protein [G 78.6 83 0.0018 32.2 19.6 73 257-334 149-222 (933)
91 KOG0282 mRNA splicing factor [ 78.5 60 0.0013 30.6 13.0 33 303-335 435-467 (503)
92 PF13570 PQQ_3: PQQ-like domai 76.8 5.4 0.00012 23.2 3.7 26 200-232 15-40 (40)
93 KOG0289 mRNA splicing factor [ 75.9 69 0.0015 29.9 12.3 116 205-340 357-472 (506)
94 PLN00181 protein SPA1-RELATED; 72.8 1.2E+02 0.0026 31.3 24.1 191 109-333 547-741 (793)
95 cd00216 PQQ_DH Dehydrogenases 70.3 95 0.0021 30.0 12.5 131 203-340 106-274 (488)
96 KOG0293 WD40 repeat-containing 69.6 97 0.0021 28.8 14.9 88 254-355 403-492 (519)
97 KOG0316 Conserved WD40 repeat- 66.8 83 0.0018 27.0 14.8 186 107-337 28-220 (307)
98 cd00216 PQQ_DH Dehydrogenases 66.0 74 0.0016 30.7 10.7 31 200-237 55-87 (488)
99 PF12458 DUF3686: ATPase invol 65.5 58 0.0013 30.4 9.1 139 106-281 237-384 (448)
100 COG4946 Uncharacterized protei 65.0 1.3E+02 0.0028 28.6 15.1 141 173-337 286-438 (668)
101 KOG1310 WD40 repeat protein [G 64.8 93 0.002 30.1 10.4 35 303-337 276-310 (758)
102 KOG0639 Transducin-like enhanc 64.7 80 0.0017 30.1 9.9 52 224-282 488-540 (705)
103 TIGR03866 PQQ_ABC_repeats PQQ- 63.4 99 0.0022 26.7 21.5 180 115-335 9-192 (300)
104 KOG4152 Host cell transcriptio 62.8 98 0.0021 29.7 10.1 166 172-342 55-249 (830)
105 PF13013 F-box-like_2: F-box-l 61.7 3.3 7.1E-05 30.7 0.5 29 4-32 22-50 (109)
106 KOG0649 WD40 repeat protein [G 60.9 34 0.00074 29.3 6.3 67 274-340 82-154 (325)
107 COG4946 Uncharacterized protei 60.7 1.6E+02 0.0034 28.1 16.6 32 308-341 274-305 (668)
108 PF13859 BNR_3: BNR repeat-lik 60.2 1.3E+02 0.0029 27.1 12.3 90 198-296 122-217 (310)
109 cd01207 Ena-Vasp Enabled-VASP- 58.7 40 0.00087 25.1 5.7 43 118-166 10-52 (111)
110 TIGR02658 TTQ_MADH_Hv methylam 58.6 1.5E+02 0.0033 27.3 23.8 199 105-337 113-337 (352)
111 KOG2437 Muskelin [Signal trans 58.5 18 0.00038 34.4 4.6 141 124-267 235-395 (723)
112 PF13854 Kelch_5: Kelch motif 58.5 27 0.00059 20.5 4.1 32 250-281 7-38 (42)
113 PF07433 DUF1513: Protein of u 58.3 1.4E+02 0.003 26.8 21.0 219 108-340 18-257 (305)
114 PF03088 Str_synth: Strictosid 56.7 31 0.00067 24.5 4.7 32 306-337 3-52 (89)
115 COG2706 3-carboxymuconate cycl 56.7 1.6E+02 0.0034 26.8 18.9 155 173-337 166-330 (346)
116 TIGR03866 PQQ_ABC_repeats PQQ- 56.0 1.3E+02 0.0029 25.9 22.6 118 206-341 167-290 (300)
117 KOG2321 WD40 repeat protein [G 54.9 1.3E+02 0.0028 29.4 9.6 110 206-337 145-265 (703)
118 cd00200 WD40 WD40 domain, foun 54.7 1.3E+02 0.0027 25.2 19.7 97 224-337 116-214 (289)
119 KOG4649 PQQ (pyrrolo-quinoline 53.9 1.5E+02 0.0033 25.9 10.1 120 185-333 2-126 (354)
120 KOG0265 U5 snRNP-specific prot 53.3 70 0.0015 28.3 7.1 69 257-336 58-126 (338)
121 KOG0319 WD40-repeat-containing 53.0 1.4E+02 0.003 30.0 9.7 66 224-296 41-107 (775)
122 KOG2502 Tub family proteins [G 51.6 10 0.00023 34.0 2.0 38 3-40 44-89 (355)
123 PF09910 DUF2139: Uncharacteri 50.2 1.9E+02 0.0041 25.9 9.8 102 224-334 79-185 (339)
124 KOG0291 WD40-repeat-containing 49.5 3E+02 0.0065 28.0 15.8 118 202-332 251-382 (893)
125 KOG0647 mRNA export protein (c 48.2 2E+02 0.0044 25.6 11.2 92 224-334 95-188 (347)
126 KOG2437 Muskelin [Signal trans 47.4 32 0.0007 32.7 4.5 132 201-337 265-419 (723)
127 KOG1036 Mitotic spindle checkp 47.1 2.1E+02 0.0046 25.5 16.2 92 223-334 75-167 (323)
128 PRK04922 tolB translocation pr 47.1 2.5E+02 0.0055 26.5 13.8 115 206-341 214-334 (433)
129 cd01206 Homer Homer type EVH1 47.1 47 0.001 24.5 4.4 40 117-165 11-51 (111)
130 KOG0316 Conserved WD40 repeat- 46.3 1.9E+02 0.0042 24.9 13.5 185 107-335 71-262 (307)
131 PF14583 Pectate_lyase22: Olig 46.3 2.5E+02 0.0054 26.2 14.5 110 222-340 167-282 (386)
132 COG4257 Vgb Streptogramin lyas 46.3 2.1E+02 0.0046 25.3 16.7 209 105-337 70-312 (353)
133 PF06058 DCP1: Dcp1-like decap 45.2 63 0.0014 24.5 5.2 27 315-342 22-48 (122)
134 KOG2445 Nuclear pore complex c 45.1 2.3E+02 0.005 25.4 11.2 82 257-342 124-221 (361)
135 KOG0299 U3 snoRNP-associated p 44.5 2.8E+02 0.0061 26.2 18.7 105 202-319 332-444 (479)
136 PRK04792 tolB translocation pr 44.4 2.9E+02 0.0062 26.3 18.5 144 173-337 241-389 (448)
137 COG0823 TolB Periplasmic compo 43.0 1.4E+02 0.0031 28.2 8.2 103 224-342 219-325 (425)
138 PF03178 CPSF_A: CPSF A subuni 42.4 2.5E+02 0.0055 25.1 14.3 95 223-337 62-166 (321)
139 PRK02889 tolB translocation pr 42.3 3E+02 0.0065 25.9 13.8 117 206-342 207-327 (427)
140 PRK03629 tolB translocation pr 42.3 3E+02 0.0066 26.0 17.7 153 163-337 212-370 (429)
141 KOG0291 WD40-repeat-containing 41.0 4.1E+02 0.0089 27.1 20.3 112 201-333 439-553 (893)
142 KOG0301 Phospholipase A2-activ 40.7 3.9E+02 0.0085 26.8 12.5 89 224-332 201-290 (745)
143 KOG2055 WD40 repeat protein [G 40.6 3.3E+02 0.0071 25.9 14.1 110 109-238 272-381 (514)
144 PF02239 Cytochrom_D1: Cytochr 40.1 3.1E+02 0.0066 25.4 12.3 106 208-336 6-114 (369)
145 KOG0295 WD40 repeat-containing 39.4 1.8E+02 0.0039 26.6 7.7 66 259-337 305-371 (406)
146 KOG3926 F-box proteins [Amino 38.3 20 0.00043 31.1 1.6 43 3-45 201-244 (332)
147 PF08268 FBA_3: F-box associat 38.0 1.8E+02 0.0038 22.0 9.8 92 172-263 18-118 (129)
148 PTZ00334 trans-sialidase; Prov 37.6 2.5E+02 0.0054 28.9 9.2 83 200-291 263-348 (780)
149 PRK00178 tolB translocation pr 37.5 3.5E+02 0.0076 25.3 18.7 144 173-337 222-370 (430)
150 KOG0279 G protein beta subunit 36.6 3E+02 0.0066 24.3 9.9 96 220-333 169-265 (315)
151 PLN02772 guanylate kinase 35.2 2.9E+02 0.0063 25.9 8.7 80 252-335 29-113 (398)
152 PRK04043 tolB translocation pr 34.2 4.1E+02 0.0088 25.1 20.9 190 116-337 212-407 (419)
153 PF12217 End_beta_propel: Cata 33.8 2.8E+02 0.006 24.3 7.6 64 203-268 197-260 (367)
154 PTZ00420 coronin; Provisional 33.6 3.3E+02 0.0072 27.0 9.4 54 274-335 149-202 (568)
155 TIGR03075 PQQ_enz_alc_DH PQQ-d 33.4 1.7E+02 0.0038 28.6 7.5 29 312-340 120-148 (527)
156 KOG1963 WD40 repeat protein [G 31.8 5.9E+02 0.013 26.2 11.2 98 224-332 433-540 (792)
157 TIGR03074 PQQ_membr_DH membran 31.6 2.4E+02 0.0052 29.1 8.2 26 312-337 260-285 (764)
158 PRK04792 tolB translocation pr 31.3 4.7E+02 0.01 24.9 19.1 116 206-341 228-348 (448)
159 PF15525 DUF4652: Domain of un 31.0 3.1E+02 0.0066 22.7 8.9 22 321-342 139-160 (200)
160 PF00930 DPPIV_N: Dipeptidyl p 30.7 4.2E+02 0.0091 24.2 13.9 111 223-337 158-275 (353)
161 KOG0640 mRNA cleavage stimulat 30.4 4.1E+02 0.0088 23.9 10.1 160 149-336 221-389 (430)
162 COG1520 FOG: WD40-like repeat 30.3 4.3E+02 0.0093 24.2 15.2 204 104-340 65-278 (370)
163 KOG0649 WD40 repeat protein [G 30.2 3.7E+02 0.008 23.4 12.7 59 207-282 127-187 (325)
164 KOG0321 WD40 repeat-containing 30.1 2E+02 0.0044 28.4 6.9 105 224-337 75-182 (720)
165 KOG0296 Angio-associated migra 29.9 4.4E+02 0.0096 24.2 12.5 100 223-337 86-185 (399)
166 KOG1034 Transcriptional repres 29.8 2.3E+02 0.005 25.7 6.7 53 274-329 330-382 (385)
167 PF07250 Glyoxal_oxid_N: Glyox 29.6 2.4E+02 0.0051 24.4 6.8 89 224-320 47-136 (243)
168 PLN02919 haloacid dehalogenase 29.0 7.7E+02 0.017 26.7 22.2 69 256-334 813-892 (1057)
169 PRK10115 protease 2; Provision 28.9 6.4E+02 0.014 25.7 21.5 117 205-337 278-401 (686)
170 KOG0303 Actin-binding protein 28.7 4.9E+02 0.011 24.3 8.9 73 274-356 155-227 (472)
171 KOG0319 WD40-repeat-containing 27.5 6.7E+02 0.014 25.5 14.2 191 104-334 27-226 (775)
172 KOG3669 Uncharacterized conser 27.1 6.2E+02 0.013 25.0 10.6 58 177-244 211-274 (705)
173 TIGR03032 conserved hypothetic 26.2 2.4E+02 0.0053 25.5 6.3 55 200-267 206-261 (335)
174 KOG1920 IkappaB kinase complex 26.1 8.8E+02 0.019 26.4 16.7 123 224-361 267-399 (1265)
175 KOG2096 WD40 repeat protein [G 26.1 2.5E+02 0.0055 25.3 6.3 55 274-331 109-164 (420)
176 PF07569 Hira: TUP1-like enhan 26.0 4E+02 0.0088 22.5 8.4 34 97-131 12-45 (219)
177 KOG4379 Uncharacterized conser 25.9 4.3E+02 0.0094 25.1 8.0 53 275-327 478-535 (596)
178 KOG0266 WD40 repeat-containing 25.8 5.9E+02 0.013 24.3 19.2 141 173-337 224-371 (456)
179 PF07569 Hira: TUP1-like enhan 25.4 4.2E+02 0.009 22.4 8.3 46 306-358 72-118 (219)
180 KOG0283 WD40 repeat-containing 25.1 1.8E+02 0.004 29.3 5.9 60 273-340 432-491 (712)
181 PF15232 DUF4585: Domain of un 25.1 1.4E+02 0.0031 20.3 3.6 10 124-133 35-44 (75)
182 KOG2321 WD40 repeat protein [G 24.8 2.5E+02 0.0054 27.5 6.4 77 101-186 181-262 (703)
183 KOG0293 WD40 repeat-containing 24.3 2.4E+02 0.0052 26.4 6.0 71 254-335 319-389 (519)
184 KOG0300 WD40 repeat-containing 24.3 2.8E+02 0.006 24.9 6.2 58 273-337 378-435 (481)
185 PF02239 Cytochrom_D1: Cytochr 23.9 5.8E+02 0.013 23.6 20.4 193 115-340 14-212 (369)
186 KOG0321 WD40 repeat-containing 23.8 7.4E+02 0.016 24.8 13.4 176 95-283 154-349 (720)
187 PRK13259 regulatory protein Sp 23.7 80 0.0017 22.7 2.4 35 98-132 32-70 (94)
188 PF15408 PH_7: Pleckstrin homo 23.6 24 0.00053 24.6 -0.2 22 24-45 79-100 (104)
189 PRK04922 tolB translocation pr 23.4 6.3E+02 0.014 23.8 19.0 143 173-337 227-375 (433)
190 cd00200 WD40 WD40 domain, foun 23.3 4.3E+02 0.0093 21.8 21.3 95 224-337 158-256 (289)
191 KOG2106 Uncharacterized conser 23.2 7E+02 0.015 24.2 20.5 54 273-337 390-443 (626)
192 PF02393 US22: US22 like; Int 23.1 1.6E+02 0.0035 21.9 4.3 24 314-337 83-106 (125)
193 KOG2048 WD40 repeat protein [G 23.0 7.8E+02 0.017 24.7 16.1 26 106-132 214-239 (691)
194 PF02191 OLF: Olfactomedin-lik 22.2 4.3E+02 0.0092 23.0 7.1 51 287-342 57-109 (250)
195 PF14339 DUF4394: Domain of un 22.1 3E+02 0.0066 23.6 6.0 53 107-163 38-92 (236)
196 PTZ00421 coronin; Provisional 22.1 7.3E+02 0.016 24.1 14.6 110 206-333 87-201 (493)
197 KOG0295 WD40 repeat-containing 21.9 2E+02 0.0044 26.3 5.1 95 223-333 130-226 (406)
198 PRK00178 tolB translocation pr 21.7 6.7E+02 0.014 23.5 22.4 186 117-337 223-413 (430)
199 PTZ00420 coronin; Provisional 21.6 8E+02 0.017 24.4 23.3 166 147-337 128-300 (568)
200 KOG0643 Translation initiation 21.5 5.7E+02 0.012 22.6 11.9 104 224-333 75-180 (327)
201 KOG0645 WD40 repeat protein [G 21.5 5.7E+02 0.012 22.6 19.3 150 173-342 36-193 (312)
202 KOG0639 Transducin-like enhanc 20.8 5.4E+02 0.012 24.9 7.7 104 223-336 440-545 (705)
203 PF12768 Rax2: Cortical protei 20.7 6E+02 0.013 22.5 10.5 62 173-240 15-81 (281)
204 PF13919 ASXH: Asx homology do 20.3 43 0.00093 26.1 0.5 44 3-46 43-106 (138)
205 KOG0292 Vesicle coat complex C 20.2 1E+03 0.022 25.1 15.1 27 314-341 333-359 (1202)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.3e-34 Score=247.89 Aligned_cols=222 Identities=25% Similarity=0.363 Sum_probs=166.9
Q ss_pred EeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+++||||+|+... ..++ ||||+||+++.||+++...........++|||+.+++||||++...........++||+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~-V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLV-VWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEE-EECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 4799999998865 6788 9999999999999876432110122679999999999999999764322345689999999
Q ss_pred CCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEECCeEE
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEALGGCLC 261 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~g~L~ 261 (366)
+++||.+...+........+|++||.+||++....+. ....|++||+++|+|+ .+++|...........|++++|+|+
T Consensus 79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred CCCccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEE
Confidence 9999998754433222233999999999999765321 1137999999999999 5899976522223568999999999
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEEEecCCcEEEEEeeC--Ce-EEEEeCCCC
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLVYSRSEDKVLLHAVR--GD-LCWYDLERH 332 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~~~~~g~~i~~~~~~--~~-~~~yd~~t~ 332 (366)
++......+ .++||+|++++. ..|+++++|+.... ....|.++..+| +|++.... ++ ++.||++|+
T Consensus 158 ~v~~~~~~~---~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g-~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTN---NFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKG-EIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCC---cEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCC-EEEEEeCCCCceEEEEEeccCC
Confidence 998864311 699999998865 45999999985322 124578888887 88887664 44 999999985
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.70 E-value=2.2e-15 Score=122.32 Aligned_cols=149 Identities=33% Similarity=0.558 Sum_probs=105.6
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEE
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
+|++||.+||++....... ...|++||+++|+| ..+++|...........|++. +|+|+++....... .++||+
T Consensus 1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~---~~~IWv 76 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETS---KIEIWV 76 (164)
T ss_pred CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCc---cEEEEE
Confidence 6899999999998864321 12799999999999 888999887423456677555 78999997644321 699999
Q ss_pred eccCC-CCCceEEEEEeccCCCc-----eeeEEEEecCCcEEEEEeeC-------CeEEEEeCCCCeEEEeeeecCcccC
Q 017748 280 MKEYG-VNDSWTKLATLLNVGGG-----NVKPLVYSRSEDKVLLHAVR-------GDLCWYDLERHRVRSIVEIDDKVRR 346 (366)
Q Consensus 280 l~~~~-~~~~W~~~~~i~~~~~~-----~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t~~~~~v~~~~~~~~~ 346 (366)
|++++ ...+|++..+|+..... +..+..+..++++++++.+. ..++.|+ +++..+++ +++.....
T Consensus 77 m~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~-~~~~~~~~ 154 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEV-DIEDKSSC 154 (164)
T ss_pred EeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEc-ccccCCCC
Confidence 99765 26899999999865441 11233333344466666432 2378888 88888888 77541346
Q ss_pred eeeeeEEecC
Q 017748 347 CDMRTVCVNT 356 (366)
Q Consensus 347 ~~~~~~y~~s 356 (366)
++..+.|+||
T Consensus 155 ~~~~~~YvpS 164 (164)
T PF07734_consen 155 WPSICNYVPS 164 (164)
T ss_pred CCCEEEECCC
Confidence 7888899987
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.69 E-value=1.9e-14 Score=128.45 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=159.7
Q ss_pred CCCCCCCcHHHHHHHHccCC-cccceeeeccchhhhhhcCChhHHHHHHhcccccCCceEEEEeeecCCceeEEEeeccc
Q 017748 1 METSVQLPLDLIVDILIRLP-VRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVENSKWKRRYYSLSFD 79 (366)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLP-~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (366)
|++++.||+|||..|..||| ..++.|||+|||+||+.+.... + . .+ .+..+++++...... ..+.. +
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~-~~-~~~~~~~~~~~~~~~--~~~~~---~ 68 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--K-NP-FRTRPLILFNPINPS--ETLTD---D 68 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--c-CC-cccccccccCcccCC--CCccc---c
Confidence 89999999999999999996 6689999999999999986410 0 0 00 000122222210000 00000 0
Q ss_pred ccCCCCcceecCCCccC-CCceE-EEeeeceeEEeec---CCccEEEEEeccccceeecCCcCCCCCCCC----cceEEE
Q 017748 80 QYAFDNCLEIDLPLMKN-CKFGF-IIGSCNGLLALED---SRRNIMLLLNPLTKRHRVLPTFYRDLSRCV----PSLEGF 150 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~Gll~~~~---~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~----~~~~~l 150 (366)
.. ........+... ..+.. ..++..|++.-.. ...++. +.||+++.-..+|+-....-... ...+.+
T Consensus 69 --~~-~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~-Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l 144 (373)
T PLN03215 69 --RS-YISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFH-LLNPLSRLPLRHSSESVDLLEFTVSEIREAYQV 144 (373)
T ss_pred --cc-ccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccE-ecCccccCccCCCCccceeeeeEEEEccceEEE
Confidence 00 000000000000 00000 1134678886654 346778 99999999887775332211100 011111
Q ss_pred -eeecC---CCCe--EEEEEEEEcCCCCccEEEEEEec------CCcEEEccCCCcceecCCcceEECCcEEEEEeeCCC
Q 017748 151 -GFDVG---SGDF--KLVKILAFGKPMNYTEVAVFSLR------VNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQD 218 (366)
Q Consensus 151 -g~d~~---~~~y--kvv~~~~~~~~~~~~~~~vyss~------t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~ 218 (366)
+.+.. ...| |++......++.....+.|+..+ .++|+.++.... .....++.+|.+|.+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~---~~~DIi~~kGkfYAvD~~G-- 219 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY---HFSDIIVHKGQTYALDSIG-- 219 (373)
T ss_pred EecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc---eeeEEEEECCEEEEEcCCC--
Confidence 11110 0013 22222110111112233333222 478888764322 2355799999999995543
Q ss_pred CCCCcEEEEEECCCceeeeeC--CCCccC--CCCceEEEEEECCeEEEEEeecCCC------------CCCcEEEEEecc
Q 017748 219 ADRNDIIIAFDLKSEEFYQVP--LPPIVG--IEGYYILLEALGGCLCLLCKFDDDD------------DDRPWDLWVMKE 282 (366)
Q Consensus 219 ~~~~~~i~~fD~~~~~~~~i~--lP~~~~--~~~~~~~l~~~~g~L~l~~~~~~~~------------~~~~l~iW~l~~ 282 (366)
.+.++|.+-+ .+.+. +..... .......|++..|+|++|....... ....++|+.++.
T Consensus 220 -----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~ 293 (373)
T PLN03215 220 -----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD 293 (373)
T ss_pred -----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC
Confidence 5777774322 12221 110010 1123567999999999998853210 123688899986
Q ss_pred CCCCCceEEEEEeccCCC--ceeeEEEE------ecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGG--GNVKPLVY------SRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~--~~~~~~~~------~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. ..+|.++.+++...+ +.....++ ...++.||+..+.. ..+||++.++...+
T Consensus 294 ~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~-~~v~~~~dg~~~~~ 353 (373)
T PLN03215 294 E--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTM-PKVFKLDNGNGSSI 353 (373)
T ss_pred C--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCc-ceEEECCCCCccce
Confidence 3 467999999876443 11111111 12346888887655 88999999997766
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.59 E-value=4.7e-14 Score=109.72 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=83.8
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEec
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
|+++||++||++... ......|++||+++|+|+.|++|...........|.+++|+|+++....... ...++||+|+
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 689999999999882 2223699999999999999999932223345778999999999988876531 3469999999
Q ss_pred cCCCCCceEEEEEe-ccCCC-----ceeeEEEEecCCcEEEEE
Q 017748 282 EYGVNDSWTKLATL-LNVGG-----GNVKPLVYSRSEDKVLLH 318 (366)
Q Consensus 282 ~~~~~~~W~~~~~i-~~~~~-----~~~~~~~~~~~g~~i~~~ 318 (366)
+++. ++|++.+.+ +.... ....+.++..+| +|++.
T Consensus 78 D~~k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~G-eiv~~ 118 (129)
T PF08268_consen 78 DYEK-QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTG-EIVFA 118 (129)
T ss_pred cccc-ceEEEEEEECChHHhcccCCcEEEEEEEcCCC-EEEEE
Confidence 9864 789998664 43221 136778888777 66666
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.56 E-value=7e-13 Score=127.98 Aligned_cols=197 Identities=10% Similarity=0.127 Sum_probs=131.7
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.+. .+||.+++|..+|+++..+.. +..++++ + ||.+++..........+++|+..+++|+.++.+|....
T Consensus 321 ~v~-~Yd~~~n~W~~~~~m~~~R~~--~~~~~~~-----g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~ 390 (557)
T PHA02713 321 KVY-KINIENKIHVELPPMIKNRCR--FSLAVID-----D--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS 390 (557)
T ss_pred eEE-EEECCCCeEeeCCCCcchhhc--eeEEEEC-----C--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc
Confidence 466 899999999999998865532 2222221 2 44444322222234579999999999999998887654
Q ss_pred cCCcceEECCcEEEEEeeCCCC-----------------CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCe
Q 017748 198 TGTCSVFVNGALHWTAALNQDA-----------------DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGC 259 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~-----------------~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~ 259 (366)
.. ..+.++|.+|.+++..... .....+.+||+++++|+.+ ++|... ....+++.+|+
T Consensus 391 ~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r----~~~~~~~~~~~ 465 (557)
T PHA02713 391 SY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT----IRPGVVSHKDD 465 (557)
T ss_pred cc-cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc----ccCcEEEECCE
Confidence 33 3678999999998754210 0134799999999999988 666654 34567899999
Q ss_pred EEEEEeecCCCCCCcE-EEEEeccCCCC-CceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeE
Q 017748 260 LCLLCKFDDDDDDRPW-DLWVMKEYGVN-DSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRV 334 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l-~iW~l~~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~ 334 (366)
||++++..+.. ... .+-..+. .. ++|+.+..|+.... ..-.++ .+| +|++.+... .+-.||++|++|
T Consensus 466 IYv~GG~~~~~--~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~--~~~~~~-~~~-~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 466 IYVVCDIKDEK--NVKTCIFRYNT--NTYNGWELITTTESRLS--ALHTIL-HDN-TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EEEEeCCCCCC--ccceeEEEecC--CCCCCeeEccccCcccc--cceeEE-ECC-EEEEEeeecceeehhhcCcccccc
Confidence 99998865321 011 1223332 23 47999988876442 222222 234 888876532 389999999999
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
..+
T Consensus 538 ~~~ 540 (557)
T PHA02713 538 NHI 540 (557)
T ss_pred cch
Confidence 999
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.49 E-value=2.5e-12 Score=123.80 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=139.8
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
... .+||.+++|..+|++...+.. ...+.+ ..++.++..++.......+|.|+..++.|..++.|+....
T Consensus 350 ~ve-~YD~~~~~W~~~a~M~~~R~~--~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~ 419 (571)
T KOG4441|consen 350 SVE-RYDPRTNQWTPVAPMNTKRSD--FGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS 419 (571)
T ss_pred eEE-EecCCCCceeccCCccCcccc--ceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee
Confidence 456 899999999999999876653 221221 2345555443444556689999999999999998877433
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~ 276 (366)
. ..++.++|.+|-+++..........+.+||+.+++|+.+ +++... ....+++++|+||++++.++.. .+.
T Consensus 420 ~-~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----~~~g~a~~~~~iYvvGG~~~~~---~~~ 491 (571)
T KOG4441|consen 420 G-HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----SGFGVAVLNGKIYVVGGFDGTS---ALS 491 (571)
T ss_pred e-eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----ccceEEEECCEEEEECCccCCC---ccc
Confidence 3 337889999999998764433456999999999999998 888776 4455899999999999987632 221
Q ss_pred EEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEEeee
Q 017748 277 LWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRSIVE 339 (366)
Q Consensus 277 iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~v~~ 339 (366)
- .+.|+ ..++|..+..|.... .-.++...++.+++..... .+-.||+++++|..+.+
T Consensus 492 ~--VE~ydp~~~~W~~v~~m~~~r----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 492 S--VERYDPETNQWTMVAPMTSPR----SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred e--EEEEcCCCCceeEcccCcccc----ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 1 23232 357899997666543 2233333344788875422 39999999999999944
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.45 E-value=7.6e-12 Score=120.50 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=141.0
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
... .+||.+++|..+.+++..+.. ...+.++ + +|..++..+ .......+++|++.+++|..++.|....
T Consensus 302 ~ve-~yd~~~~~w~~~a~m~~~r~~--~~~~~~~-----~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R 371 (571)
T KOG4441|consen 302 SVE-CYDPKTNEWSSLAPMPSPRCR--VGVAVLN-----G--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR 371 (571)
T ss_pred eeE-EecCCcCcEeecCCCCccccc--ccEEEEC-----C--EEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence 344 789999999999999866542 2222222 1 444444333 2355679999999999999998887655
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.... .+.++|.+|.+++.. +......+..||+.+++|+.+ +++... .....++.+|+||++++..... -
T Consensus 372 ~~~~-v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~GG~~~~~----~ 441 (571)
T KOG4441|consen 372 SDFG-VAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYIIGGGDGSS----N 441 (571)
T ss_pred ccce-eEEECCEEEEEeccc-cccccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEEcCcCCCc----c
Confidence 4333 678999999999876 333445899999999999998 687754 5667889999999999976631 1
Q ss_pred EEEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~v~~~~ 341 (366)
.+=.++-|+ ..++|..+..|+.... ...+++. ++ .||.+.... .+-.||+++++|..+..+.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRS--GFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccc--cceEEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 111223332 4578999999887653 3334443 33 788886522 3899999999999994454
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.43 E-value=2.1e-11 Score=118.30 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=130.8
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.++ .+||.|++|..+|+++.++.. ...+.++ + ++..++..........+++|+..+++|+..+.+|....
T Consensus 312 ~v~-~yd~~~~~W~~~~~~~~~R~~--~~~~~~~-----~--~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~ 381 (534)
T PHA03098 312 SVV-SYDTKTKSWNKVPELIYPRKN--PGVTVFN-----N--RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY 381 (534)
T ss_pred cEE-EEeCCCCeeeECCCCCccccc--ceEEEEC-----C--EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc
Confidence 577 999999999999988755432 2222221 2 23333322222335578999999999999988876543
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC-CcE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD-RPW 275 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~-~~l 275 (366)
. ..++.++|.+|.+++..........+..||+.+++|..+ ++|... .....+..+|+||++++....+.. ..-
T Consensus 382 ~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 382 N-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred c-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECCccCCCCCcccc
Confidence 3 335779999999988543222235799999999999988 666554 233467789999999886542111 012
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
.+|..+. ..++|+++..++.... ....++ .++ .|++.... ..+..||+++++|+.+
T Consensus 457 ~v~~yd~--~~~~W~~~~~~~~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 457 IVESYNP--VTNKWTELSSLNFPRI--NASLCI-FNN-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred eEEEecC--CCCceeeCCCCCcccc--cceEEE-ECC-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 3666665 3468999876654332 222222 244 77776542 2499999999999988
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.42 E-value=2.4e-11 Score=117.36 Aligned_cols=202 Identities=10% Similarity=0.108 Sum_probs=131.5
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
... .+||.+++|..++++|..+.. ...+.+ +. +|..++... .......++.|+..++.|..++.|+...
T Consensus 273 ~v~-~yd~~~~~W~~l~~mp~~r~~--~~~a~l------~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R 342 (557)
T PHA02713 273 CIL-VYNINTMEYSVISTIPNHIIN--YASAIV------DN-EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR 342 (557)
T ss_pred CEE-EEeCCCCeEEECCCCCccccc--eEEEEE------CC-EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence 356 889999999999988765432 111111 12 344443211 1123467899999999999999887654
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCC----
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDD---- 271 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~---- 271 (366)
.. ...+.++|++|.+++.... .....+.+||+.+++|..+ ++|... .....++++|+||++++......
T Consensus 343 ~~-~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 343 CR-FSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hc-eeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCCCcccccccc
Confidence 33 3468899999999986422 2234799999999999988 777665 33456788999999988653100
Q ss_pred ------------CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEEeCCC-
Q 017748 272 ------------DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWYDLER- 331 (366)
Q Consensus 272 ------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t- 331 (366)
...-.+...+. ..++|+.+..++.... ...++..+| .||+.... ..+..||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~---~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI---RPGVVSHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccceEEEECC--CCCeEeecCCCCcccc---cCcEEEECC-EEEEEeCCCCCCccceeEEEecCCCC
Confidence 00112333333 3468998877765432 222223344 88887542 1267999999
Q ss_pred CeEEEeeeec
Q 017748 332 HRVRSIVEID 341 (366)
Q Consensus 332 ~~~~~v~~~~ 341 (366)
++|+.+..++
T Consensus 491 ~~W~~~~~m~ 500 (557)
T PHA02713 491 NGWELITTTE 500 (557)
T ss_pred CCeeEccccC
Confidence 8999985554
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.33 E-value=2.1e-10 Score=109.23 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=122.6
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
... .+||.++.|..+|+++.++.. ...+. .+ + +|.+++... ....++.|+..+++|..++++|....
T Consensus 288 ~v~-~Ydp~~~~W~~~~~m~~~r~~--~~~v~--~~---~--~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~ 354 (480)
T PHA02790 288 NAI-AVNYISNNWIPIPPMNSPRLY--ASGVP--AN---N--KLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRC 354 (480)
T ss_pred eEE-EEECCCCEEEECCCCCchhhc--ceEEE--EC---C--EEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCc
Confidence 455 789999999999998765432 22221 11 2 333333211 12458999999999999998886543
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEE
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~ 276 (366)
. ..++.++|.+|.+++.... ...+.+||+++++|+.+ ++|... .....++.+|+||++++. .+
T Consensus 355 ~-~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~GG~--------~e 418 (480)
T PHA02790 355 N-PAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLVGRN--------AE 418 (480)
T ss_pred c-cEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEECCc--------eE
Confidence 2 3467899999999886422 14688999999999988 555544 334567899999999852 22
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
++ +. ..++|+.+..++.... ..-++..+| +|++.+.. ..+..||+++++|+.-
T Consensus 419 ~y--dp--~~~~W~~~~~m~~~r~---~~~~~v~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 419 FY--CE--SSNTWTLIDDPIYPRD---NPELIIVDN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred Ee--cC--CCCcEeEcCCCCCCcc---ccEEEEECC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 22 21 2467999877765332 222223344 88887642 2489999999999865
No 11
>PLN02153 epithiospecifier protein
Probab=99.31 E-value=2.6e-09 Score=97.59 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=121.7
Q ss_pred ccEEEEEeccccceeecCCcCC-CCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC---
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYR-DLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF--- 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~-~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~--- 192 (366)
..++ ++||.+++|..+|+... ++.. .....+..++ + +|+.+.-.........+++|+..+++|+.++.+
T Consensus 50 ~~~~-~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~~---~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLY-VFDFNTHTWSIAPANGDVPRIS-CLGVRMVAVG---T--KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEE-EEECCCCEEEEcCccCCCCCCc-cCceEEEEEC---C--EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence 3578 99999999999887542 2211 1111111111 2 344443222222345789999999999988765
Q ss_pred --CcceecCCcceEECCcEEEEEeeCCCC-----CCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEe
Q 017748 193 --PYFWVTGTCSVFVNGALHWTAALNQDA-----DRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCK 265 (366)
Q Consensus 193 --~~~~~~~~~~v~~~G~lYw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~ 265 (366)
|... .....+..+|++|.+++..... .....+.+||+++++|..++.+......+....+++.+|+||++..
T Consensus 123 ~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 123 GGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEec
Confidence 3222 2334678899999998764321 1123689999999999987533211011123356778999999876
Q ss_pred ecCC------CCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeC---------------Ce
Q 017748 266 FDDD------DDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVR---------------GD 323 (366)
Q Consensus 266 ~~~~------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~---------------~~ 323 (366)
.... .....-+++.++- ...+|+++........ ......++ . ++.|++.... ..
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHAV-V-GKYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred cccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeEE-E-CCEEEEECcccCCcccccccccccccc
Confidence 4321 0000124566654 2467999875432111 11222222 2 3367776442 14
Q ss_pred EEEEeCCCCeEEEe
Q 017748 324 LCWYDLERHRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t~~~~~v 337 (366)
++.||+++++|+.+
T Consensus 278 v~~~d~~~~~W~~~ 291 (341)
T PLN02153 278 GYALDTETLVWEKL 291 (341)
T ss_pred EEEEEcCccEEEec
Confidence 89999999999998
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.26 E-value=3.4e-09 Score=97.13 Aligned_cols=209 Identities=17% Similarity=0.188 Sum_probs=125.4
Q ss_pred ccEEEEEec--cccceeecCCcCC-CCCCCCcceEEEeeecCCCCeEEEEEEEEcCC------CCccEEEEEEecCCcEE
Q 017748 117 RNIMLLLNP--LTKRHRVLPTFYR-DLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP------MNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 117 ~~~~~V~NP--~t~~~~~LP~~~~-~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~------~~~~~~~vyss~t~~W~ 187 (366)
..++ ++++ .+++|..+|+++. .+. ....+.+ + + +|.++.-.... .....++.|+..+++|+
T Consensus 29 ~~~~-~~d~~~~~~~W~~l~~~p~~~R~--~~~~~~~--~---~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 29 TSWY-KLDLKKPSKGWQKIADFPGGPRN--QAVAAAI--D---G--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred CeeE-EEECCCCCCCceECCCCCCCCcc--cceEEEE--C---C--EEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 4567 7774 6789999998873 332 1222222 1 2 34444322111 12357999999999999
Q ss_pred EccC-CCcceecCCcce-EECCcEEEEEeeCCCC---------------------------------CCCcEEEEEECCC
Q 017748 188 RIQD-FPYFWVTGTCSV-FVNGALHWTAALNQDA---------------------------------DRNDIIIAFDLKS 232 (366)
Q Consensus 188 ~~~~-~~~~~~~~~~~v-~~~G~lYw~~~~~~~~---------------------------------~~~~~i~~fD~~~ 232 (366)
.++. +|.... ...++ .++|+||.+++..... .....+.+||+++
T Consensus 99 ~~~~~~p~~~~-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t 177 (346)
T TIGR03547 99 KLDTRSPVGLL-GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST 177 (346)
T ss_pred cCCCCCCCccc-ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC
Confidence 9863 333221 12123 5899999998754210 0024799999999
Q ss_pred ceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEE
Q 017748 233 EEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLV 307 (366)
Q Consensus 233 ~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~ 307 (366)
++|+.+ ++|.... ....++..+|+||++++.... ......+|..+-.....+|+++..++.... +.....+
T Consensus 178 ~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 178 NQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred CceeECccCCCCcC---CCceEEEECCEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 999998 6764321 344577889999999987532 122345665542223467999887764321 0011112
Q ss_pred EecCCcEEEEEeeC-----------------------CeEEEEeCCCCeEEEeeeec
Q 017748 308 YSRSEDKVLLHAVR-----------------------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 308 ~~~~g~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~~~ 341 (366)
+..++ +|++.... ..+-+||+++++|+.+..++
T Consensus 254 ~~~~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 254 GISNG-VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred eEECC-EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 23344 78877532 13679999999999884444
No 13
>PLN02193 nitrile-specifier protein
Probab=99.23 E-value=3.8e-09 Score=100.42 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=123.8
Q ss_pred cEEEEEeccccceeecCCcC-CCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC---C
Q 017748 118 NIMLLLNPLTKRHRVLPTFY-RDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF---P 193 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~---~ 193 (366)
.++ ++||.+.+|..+|+.. .+... .....+..++ . ++..+.-.........+++|++.+++|+.++.+ |
T Consensus 194 ~v~-~yD~~~~~W~~~~~~g~~P~~~-~~~~~~v~~~----~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 194 HLY-VFDLETRTWSISPATGDVPHLS-CLGVRMVSIG----S-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred cEE-EEECCCCEEEeCCCCCCCCCCc-ccceEEEEEC----C-EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCC
Confidence 478 9999999999887542 11111 0111111121 1 333332212222345789999999999998766 3
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
.... ....+.+++++|.+++.... .....+.+||+.+++|+.++.|......+....+++.+|+++++.......
T Consensus 267 ~~R~-~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~--- 341 (470)
T PLN02193 267 TPRS-FHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--- 341 (470)
T ss_pred CCcc-ceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc---
Confidence 2222 23356789999999876432 123468999999999998865432211123345677899999998764321
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeC---------------CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVR---------------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~---------------~~~~~yd~~t~~~~~v 337 (366)
.-++|+++-. ..+|+++..+...+. ...... +..++ .|++.... ..+++||++|++|+++
T Consensus 342 ~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~-~~~~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 342 VDDVHYYDPV--QDKWTQVETFGVRPSERSVFAS-AAVGK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred cCceEEEECC--CCEEEEeccCCCCCCCcceeEE-EEECC-EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 3457777763 467999876532211 112222 22334 67766431 1389999999999998
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.18 E-value=1e-08 Score=94.92 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=129.2
Q ss_pred EeeeceeEEeec--CCccEEEEEecc--ccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC--C----CC
Q 017748 103 IGSCNGLLALED--SRRNIMLLLNPL--TKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK--P----MN 172 (366)
Q Consensus 103 ~~s~~Gll~~~~--~~~~~~~V~NP~--t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~--~----~~ 172 (366)
.+..++-|.+.. ....++ ++++. +++|..+|+++..... ....+.++ + +|..+.-... + ..
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~-~~d~~~~~~~W~~l~~~p~~~r~-~~~~v~~~-----~--~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWY-KLDLNAPSKGWTKIAAFPGGPRE-QAVAAFID-----G--KLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEE-EEECCCCCCCeEECCcCCCCCcc-cceEEEEC-----C--EEEEEcCCCCCCCCCceeE
Confidence 344455554322 234566 77765 5789999987632211 11222221 2 2333321111 0 11
Q ss_pred ccEEEEEEecCCcEEEccCC-CcceecCCcceE-ECCcEEEEEeeCCCC-------------------------------
Q 017748 173 YTEVAVFSLRVNSWRRIQDF-PYFWVTGTCSVF-VNGALHWTAALNQDA------------------------------- 219 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~v~-~~G~lYw~~~~~~~~------------------------------- 219 (366)
...++.|+..+++|+.++.+ |..... ..++. .+|+||.+++.....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 35789999999999998742 332211 22344 799999998754210
Q ss_pred --CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 220 --DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 220 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
.....+.+||+.+++|+.+ ++|.... ....++..+++||++++.... ..+...+|.++-.....+|+++..++
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCCC
Confidence 0124699999999999988 5665321 234567789999999986432 22355666654322346799988776
Q ss_pred cCCCc-----eeeEEEEecCCcEEEEEeeCC-----------------------eEEEEeCCCCeEEEeeeec
Q 017748 297 NVGGG-----NVKPLVYSRSEDKVLLHAVRG-----------------------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 297 ~~~~~-----~~~~~~~~~~g~~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~~~~ 341 (366)
....+ .....++..++ +|++..... .+-+||+++++|+.+..++
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNG-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CCCcCCcCCccceEeceeECC-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 53210 01111223344 777765321 2457999999999884443
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.18 E-value=6.7e-09 Score=94.21 Aligned_cols=200 Identities=12% Similarity=0.123 Sum_probs=122.5
Q ss_pred cEEEEE-ecccc-ceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE----EEccC
Q 017748 118 NIMLLL-NPLTK-RHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW----RRIQD 191 (366)
Q Consensus 118 ~~~~V~-NP~t~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W----~~~~~ 191 (366)
.++ ++ +|..+ +|..+++++.++.. ...+ ..+ + +|+.+.-.........++.|+..++.| +.++.
T Consensus 40 ~v~-~~~~~~~~~~W~~~~~lp~~r~~--~~~~--~~~---~--~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~ 109 (323)
T TIGR03548 40 GIY-IAKDENSNLKWVKDGQLPYEAAY--GASV--SVE---N--GIYYIGGSNSSERFSSVYRITLDESKEELICETIGN 109 (323)
T ss_pred eeE-EEecCCCceeEEEcccCCccccc--eEEE--EEC---C--EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC
Confidence 355 55 45433 78888877765432 1121 221 1 344443222223356789999999887 67777
Q ss_pred CCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCC
Q 017748 192 FPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 192 ~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+|..... ..++.++|++|.+++.... .....+.+||+++++|+.+ ++|...+ ....++..+++||++++.....
T Consensus 110 lp~~~~~-~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r---~~~~~~~~~~~iYv~GG~~~~~ 184 (323)
T TIGR03548 110 LPFTFEN-GSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPR---VQPVCVKLQNELYVFGGGSNIA 184 (323)
T ss_pred CCcCccC-ceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCC---CcceEEEECCEEEEEcCCCCcc
Confidence 7755432 3367789999999875322 1235799999999999998 4775331 2345577899999999865321
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCc--eeeEEEEecCCcEEEEEeeC---------------------------
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGG--NVKPLVYSRSEDKVLLHAVR--------------------------- 321 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~--~~~~~~~~~~g~~i~~~~~~--------------------------- 321 (366)
..+++..+- ..++|+++..++..... ...-.++...++.|++....
T Consensus 185 ---~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 185 ---YTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred ---ccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 345666665 34679987665321110 01112222223367766431
Q ss_pred -----------CeEEEEeCCCCeEEEe
Q 017748 322 -----------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 322 -----------~~~~~yd~~t~~~~~v 337 (366)
..+..||+++++|+.+
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W~~~ 286 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKWKSI 286 (323)
T ss_pred hCCCccccCcCceEEEEECCCCeeeEc
Confidence 2499999999999998
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=99.11 E-value=5.1e-09 Score=99.81 Aligned_cols=148 Identities=10% Similarity=0.062 Sum_probs=105.2
Q ss_pred CccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCce
Q 017748 172 NYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYY 250 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 250 (366)
....++.|++.+++|..++.|+..... ...+.++|.+|.+++.... ..+..||+.+++|..+ ++|... ..
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r----~~ 355 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR----CN 355 (480)
T ss_pred cCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC----cc
Confidence 345788999999999999988765433 3367899999999986421 3689999999999888 777654 34
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE 330 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~ 330 (366)
...++++|+||++++.... ...+..+ +. ..++|+.+..++.... ...++..+| +|++... .+..||++
T Consensus 356 ~~~~~~~g~IYviGG~~~~--~~~ve~y--dp--~~~~W~~~~~m~~~r~---~~~~~~~~~-~IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 356 PAVASINNVIYVIGGHSET--DTTTEYL--LP--NHDQWQFGPSTYYPHY---KSCALVFGR-RLFLVGR--NAEFYCES 423 (480)
T ss_pred cEEEEECCEEEEecCcCCC--CccEEEE--eC--CCCEEEeCCCCCCccc---cceEEEECC-EEEEECC--ceEEecCC
Confidence 5678899999999886542 1234443 22 2467999766665432 223333344 8888763 47889999
Q ss_pred CCeEEEeeee
Q 017748 331 RHRVRSIVEI 340 (366)
Q Consensus 331 t~~~~~v~~~ 340 (366)
+++|+.+..+
T Consensus 424 ~~~W~~~~~m 433 (480)
T PHA02790 424 SNTWTLIDDP 433 (480)
T ss_pred CCcEeEcCCC
Confidence 9999998444
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.10 E-value=7.8e-09 Score=100.41 Aligned_cols=193 Identities=8% Similarity=0.055 Sum_probs=122.7
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-CCCccEEEEEEecCCcEEEccCCCcceecCC
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-PMNYTEVAVFSLRVNSWRRIQDFPYFWVTGT 200 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~ 200 (366)
-+|+.+++|..++..+... .+..+ .. ++ +++.++.... ......+..|+..+++|..++.++..... .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~---~~~~~--~~----~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~ 336 (534)
T PHA03098 268 TNYSPLSEINTIIDIHYVY---CFGSV--VL----NN-VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-P 336 (534)
T ss_pred ecchhhhhcccccCccccc---cceEE--EE----CC-EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-c
Confidence 5688899998887654321 11111 11 11 3333322111 12234789999999999999888754433 3
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEE
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
..+.++|.+|.+++.... .....+.+||+.+++|+.+ ++|... .....+..+|++|++++....+ ...-.++.
T Consensus 337 ~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~~~~~iYv~GG~~~~~-~~~~~v~~ 410 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR----YNPCVVNVNNLIYVIGGISKND-ELLKTVEC 410 (534)
T ss_pred eEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC----ccceEEEECCEEEEECCcCCCC-cccceEEE
Confidence 467899999999986522 2234789999999999988 676654 3345577899999998854321 11224555
Q ss_pred eccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------CeEEEEeCCCCeEEEe
Q 017748 280 MKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---------~~~~~yd~~t~~~~~v 337 (366)
++- ..++|.++..++.... .. .++..++ .|++.... ..+..||+++++|+.+
T Consensus 411 yd~--~t~~W~~~~~~p~~r~--~~-~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 411 FSL--NTNKWSKGSPLPISHY--GG-CAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred EeC--CCCeeeecCCCCcccc--Cc-eEEEECC-EEEEECCccCCCCCcccceEEEecCCCCceeeC
Confidence 554 2467999876664432 22 2233334 77776531 1399999999999998
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.00 E-value=1.4e-10 Score=72.76 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNR 46 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~ 46 (366)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999998866544
No 19
>PLN02153 epithiospecifier protein
Probab=98.98 E-value=8.1e-08 Score=87.79 Aligned_cols=157 Identities=10% Similarity=0.101 Sum_probs=98.3
Q ss_pred cEEEEEEecCCcEEEccCCCc-ce--ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CC-----CCcc
Q 017748 174 TEVAVFSLRVNSWRRIQDFPY-FW--VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PL-----PPIV 244 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~-~~--~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~l-----P~~~ 244 (366)
..+++|+..+++|+.++.++. .. ......+.++|+||.+++..... ....+.+||+++++|..+ ++ |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 479999999999998765432 11 11233678899999998764322 224689999999999987 34 3322
Q ss_pred CCCCceEEEEEECCeEEEEEeecCCC---CCCc-EEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEe
Q 017748 245 GIEGYYILLEALGGCLCLLCKFDDDD---DDRP-WDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 245 ~~~~~~~~l~~~~g~L~l~~~~~~~~---~~~~-l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~ 319 (366)
.....++.+++||++++..... .... -+++.++- ..++|.++..+..... ......++ .++ +|++..
T Consensus 129 ----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~l~~~~~~~~~r~~~~~~~-~~~-~iyv~G 200 (341)
T PLN02153 129 ----TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI--ADGKWVQLPDPGENFEKRGGAGFAV-VQG-KIWVVY 200 (341)
T ss_pred ----eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC--CCCeEeeCCCCCCCCCCCCcceEEE-ECC-eEEEEe
Confidence 3445677899999998865321 0101 24666665 3467998655431111 11112222 234 666642
Q ss_pred e--------------CCeEEEEeCCCCeEEEeeee
Q 017748 320 V--------------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 320 ~--------------~~~~~~yd~~t~~~~~v~~~ 340 (366)
. ...+.+||+++++|+++ ..
T Consensus 201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~-~~ 234 (341)
T PLN02153 201 GFATSILPGGKSDYESNAVQFFDPASGKWTEV-ET 234 (341)
T ss_pred ccccccccCCccceecCceEEEEcCCCcEEec-cc
Confidence 1 12499999999999998 54
No 20
>PLN02193 nitrile-specifier protein
Probab=98.93 E-value=1.7e-07 Score=89.12 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=115.8
Q ss_pred EEEEEeccc----cceeecCCc---CCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-CC-CccEEEEEEecCCcEEEc
Q 017748 119 IMLLLNPLT----KRHRVLPTF---YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-PM-NYTEVAVFSLRVNSWRRI 189 (366)
Q Consensus 119 ~~~V~NP~t----~~~~~LP~~---~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~~-~~~~~~vyss~t~~W~~~ 189 (366)
.+ +++|.+ .+|..+++. |.++.. ..++.++ . +|+.+.-... .. ....+++|+..+++|+.+
T Consensus 139 ~y-~~~~~~~~~~~~W~~~~~~~~~P~pR~~--h~~~~~~------~-~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~ 208 (470)
T PLN02193 139 AY-ISLPSTPKLLGKWIKVEQKGEGPGLRCS--HGIAQVG------N-KIYSFGGEFTPNQPIDKHLYVFDLETRTWSIS 208 (470)
T ss_pred EE-EecCCChhhhceEEEcccCCCCCCCccc--cEEEEEC------C-EEEEECCcCCCCCCeeCcEEEEECCCCEEEeC
Confidence 56 778766 789988764 222221 1222111 2 3333322111 11 224699999999999987
Q ss_pred cCC---CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CC---CCccCCCCceEEEEEECCeEEE
Q 017748 190 QDF---PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PL---PPIVGIEGYYILLEALGGCLCL 262 (366)
Q Consensus 190 ~~~---~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~l---P~~~~~~~~~~~l~~~~g~L~l 262 (366)
+.+ |.........+.+++.+|.+++.... .....+.+||+.+++|+.+ ++ |... ....++..+++||+
T Consensus 209 ~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R----~~h~~~~~~~~iYv 283 (470)
T PLN02193 209 PATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPR----SFHSMAADEENVYV 283 (470)
T ss_pred CCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCc----cceEEEEECCEEEE
Confidence 532 22111123357799999999875432 1234799999999999987 44 3322 33456678999999
Q ss_pred EEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C----CeEEEEeCCCCeEEE
Q 017748 263 LCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R----GDLCWYDLERHRVRS 336 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~----~~~~~yd~~t~~~~~ 336 (366)
+........ .-+++.++- ...+|+.+........ +.....++. ++ +|++... + ..+..||+++++|++
T Consensus 284 ~GG~~~~~~--~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~-~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 284 FGGVSATAR--LKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVV-QG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred ECCCCCCCC--cceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEE-CC-cEEEEECCCCCccCceEEEECCCCEEEE
Confidence 988754211 234566554 2467998654211111 112222332 34 6666543 1 349999999999999
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 358 ~ 358 (470)
T PLN02193 358 V 358 (470)
T ss_pred e
Confidence 8
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.88 E-value=3.1e-10 Score=71.65 Aligned_cols=46 Identities=28% Similarity=0.490 Sum_probs=38.9
Q ss_pred CCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHH
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYV 48 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~ 48 (366)
++..||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 4567999999999999999999999999999999999998876653
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.79 E-value=1.6e-06 Score=78.64 Aligned_cols=139 Identities=12% Similarity=-0.004 Sum_probs=86.1
Q ss_pred ccEEEEEeccccce----eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRH----RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~----~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. .+|+.+++| ..+|++|..+.. ..++ .++ + +|..+.-.........+++|+..+++|+.++.+
T Consensus 88 ~~v~-~~d~~~~~w~~~~~~~~~lp~~~~~--~~~~--~~~---~--~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 88 SSVY-RITLDESKEELICETIGNLPFTFEN--GSAC--YKD---G--TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred eeEE-EEEEcCCceeeeeeEcCCCCcCccC--ceEE--EEC---C--EEEEEeCcCCCccCceEEEEcCCCCCeeECCCC
Confidence 3566 889999987 678877655432 1221 222 1 344443222223356799999999999999877
Q ss_pred CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc--CCCCceEEEEEECCeEEEEEeec
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV--GIEGYYILLEALGGCLCLLCKFD 267 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~--~~~~~~~~l~~~~g~L~l~~~~~ 267 (366)
|.........+.++|.+|.+++..... ...+.+||+++++|+.+ +++... ........++..+++|++++..+
T Consensus 158 p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 158 PGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 642222233467999999998764221 12478999999999988 333211 00012333455579999998865
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.76 E-value=3.8e-06 Score=77.80 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=97.0
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCC--cEEEEEECCCceeeee-CCCCccC---CC
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRN--DIIIAFDLKSEEFYQV-PLPPIVG---IE 247 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~--~~i~~fD~~~~~~~~i-~lP~~~~---~~ 247 (366)
..+++|+..++.|+.++.+|.........+.++|+||.+++........ .....||+++++|..+ ++|.... ..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 4689999999999999877753223334577899999999864322111 2445678899999887 6665431 00
Q ss_pred C-ceEEEEEECCeEEEEEeecCCCCC-----Cc-------EEEEEeccCC-CCCceEEEEEeccCCCceeeEEEEecCCc
Q 017748 248 G-YYILLEALGGCLCLLCKFDDDDDD-----RP-------WDLWVMKEYG-VNDSWTKLATLLNVGGGNVKPLVYSRSED 313 (366)
Q Consensus 248 ~-~~~~l~~~~g~L~l~~~~~~~~~~-----~~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~ 313 (366)
. .....++++|+||++++....... .. -.+|..+-|. ..+.|+++..++.... .. .++..++
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~~-~av~~~~- 344 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--YG-VSVSWNN- 344 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--ce-EEEEeCC-
Confidence 1 122356789999999886531100 00 0123322221 2367998877765432 22 2333344
Q ss_pred EEEEEeeC-------CeEEEEeCCCCeEEEe
Q 017748 314 KVLLHAVR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 314 ~i~~~~~~-------~~~~~yd~~t~~~~~v 337 (366)
.|++.... ..+..|+++++++...
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~ 375 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWDGKKLTVE 375 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe
Confidence 77777532 1488899998887643
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.73 E-value=3.4e-09 Score=64.38 Aligned_cols=39 Identities=49% Similarity=0.777 Sum_probs=36.8
Q ss_pred CcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 7 LPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 7 LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
||+|++.+||.+|+.+++.+++.|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.68 E-value=2.5e-06 Score=78.19 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred cEEEEEEe--cCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCC-----CCCcEEEEEECCCceeeeeCCCCccCC
Q 017748 174 TEVAVFSL--RVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDA-----DRNDIIIAFDLKSEEFYQVPLPPIVGI 246 (366)
Q Consensus 174 ~~~~vyss--~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~ 246 (366)
..+++|++ .+++|+.++.+|.........+.++|.||.+++..... .....+.+||+.+++|+.+..|....
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~- 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG- 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-
Confidence 46788886 46889999988732222334678999999999864211 01347999999999999985322210
Q ss_pred CCceEEEEEECCeEEEEEeecCCCC-----------C---------------------CcEEEEEeccCCCCCceEEEEE
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDD-----------D---------------------RPWDLWVMKEYGVNDSWTKLAT 294 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~-----------~---------------------~~l~iW~l~~~~~~~~W~~~~~ 294 (366)
......++..+|+||++++...... . ..-.+|..+- ..++|..+..
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp--~t~~W~~~~~ 185 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP--STNQWRNLGE 185 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC--CCCceeECcc
Confidence 1112223368999999988642100 0 0024666665 3467999887
Q ss_pred eccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEE--eCCCCeEEEeeee
Q 017748 295 LLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWY--DLERHRVRSIVEI 340 (366)
Q Consensus 295 i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~y--d~~t~~~~~v~~~ 340 (366)
++.... .....+..++ +|++.... ..+..| |+++++|..+-.+
T Consensus 186 ~p~~~r--~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 186 NPFLGT--AGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCCCcC--CCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 764321 2222233344 77776431 124445 5577899887333
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.38 E-value=1.6e-05 Score=70.72 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=130.3
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC-----CCccEEEEEEecCCcEEEccC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP-----MNYTEVAVFSLRVNSWRRIQD 191 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~-----~~~~~~~vyss~t~~W~~~~~ 191 (366)
+.+| ++|--+.+|+.+-.|..+.++ +.......|+. +-.+....+.+. ......++|+..+..|..+..
T Consensus 98 ndLy-~Yn~k~~eWkk~~spn~P~pR---sshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 98 NDLY-SYNTKKNEWKKVVSPNAPPPR---SSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeee-EEeccccceeEeccCCCcCCC---ccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 3588 999999999887544433332 22223333332 333333333332 345678999999999999863
Q ss_pred C--CcceecCCcceEECCcEEEEEeeCC---CCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEe
Q 017748 192 F--PYFWVTGTCSVFVNGALHWTAALNQ---DADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCK 265 (366)
Q Consensus 192 ~--~~~~~~~~~~v~~~G~lYw~~~~~~---~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~ 265 (366)
. |... .....|.....|.-.++-.+ ...+..-+.+||+.+=+|+.+..+......+...++.+. +|.+++.++
T Consensus 172 ~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 172 GGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 2 2222 22224444444443333221 112334799999999999998554422122244566777 889988877
Q ss_pred ecCC-------CCCCcEEEEEeccCC---CCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C------------
Q 017748 266 FDDD-------DDDRPWDLWVMKEYG---VNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R------------ 321 (366)
Q Consensus 266 ~~~~-------~~~~~l~iW~l~~~~---~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~------------ 321 (366)
+... .+..+-++|.|+... .+-.|.++......+- +----+++++++..++|..- |
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F 330 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEF 330 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhh
Confidence 6531 244567899997542 2346788776655433 11223566777656777532 1
Q ss_pred -CeEEEEeCCCCeEEEeeeecC
Q 017748 322 -GDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 322 -~~~~~yd~~t~~~~~v~~~~~ 342 (366)
+.+++||+..++|... ++++
T Consensus 331 ~NDLy~fdlt~nrW~~~-qlq~ 351 (521)
T KOG1230|consen 331 FNDLYFFDLTRNRWSEG-QLQG 351 (521)
T ss_pred hhhhhheecccchhhHh-hhcc
Confidence 1399999999999998 8876
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.28 E-value=5.3e-05 Score=63.77 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=108.4
Q ss_pred EEEeeeceeEEeec-CC------ccEEEEEeccccceeecCCcCCCCCC-CCcceEEEeeecCCCCeEEEEEEEEcCCCC
Q 017748 101 FIIGSCNGLLALED-SR------RNIMLLLNPLTKRHRVLPTFYRDLSR-CVPSLEGFGFDVGSGDFKLVKILAFGKPMN 172 (366)
Q Consensus 101 ~~~~s~~Gll~~~~-~~------~~~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~ 172 (366)
+.+-.-.+-+.+.. ++ +.++ -++|-|.+|.+.--...-... ...+++.+| +..-|+.....+-+.-
T Consensus 82 HtvV~y~d~~yvWGGRND~egaCN~Ly-~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDDEGACNLLY-EFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQRF 155 (392)
T ss_pred ceEEEEcceEEEEcCccCcccccceee-eeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHhh
Confidence 34444555555553 11 2355 668999999873211111110 023444444 2223333221111123
Q ss_pred ccEEEEEEecCCcEEEcc--CCCcceecCCcceEECCcEEEEEeeCCCC--------CCCcEEEEEECCCceeeee----
Q 017748 173 YTEVAVFSLRVNSWRRIQ--DFPYFWVTGTCSVFVNGALHWTAALNQDA--------DRNDIIIAFDLKSEEFYQV---- 238 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~--~~~~~~~~~~~~v~~~G~lYw~~~~~~~~--------~~~~~i~~fD~~~~~~~~i---- 238 (366)
...+++++..|-+|+.+- .-|..+..+..++.++|.+|-.++..+.. ..-..|++||++++.|..-
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 557888999999999874 22333333344777889999998765421 1234899999999999765
Q ss_pred CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc
Q 017748 239 PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN 297 (366)
Q Consensus 239 ~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 297 (366)
.+|.+. ..-..-+.+|++|++++....-...--++|.++. ....|+++..-..
T Consensus 236 ~~P~GR----RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 236 MKPGGR----RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGK 288 (392)
T ss_pred cCCCcc----cccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccCC
Confidence 234433 2334567899999999987632222347788887 3467999766543
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.15 E-value=9.5e-05 Score=62.29 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=122.7
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCC--CCC----C---CcceEEEeeecCCCCeEEEEE-EEEcCCCCccE
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRD--LSR----C---VPSLEGFGFDVGSGDFKLVKI-LAFGKPMNYTE 175 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~--~~~----~---~~~~~~lg~d~~~~~ykvv~~-~~~~~~~~~~~ 175 (366)
|.|-.-=..++-.+. |.|..+-+|.++|+--.. ... . .+......|+ =|+..- ...+++..-..
T Consensus 33 CsGedy~~~~piDVH-~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGGRND~egaCN~ 106 (392)
T KOG4693|consen 33 CSGEDYDAKDPIDVH-VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGGRNDDEGACNL 106 (392)
T ss_pred ccccccccCCcceeE-EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcCccCcccccce
Confidence 444443333556678 999999999999983211 110 0 1111111111 022221 22122334456
Q ss_pred EEEEEecCCcEEEcc---CCCcceecCCcceEECCcEEEEEeeCCC-CCCCcEEEEEECCCceeeeeC---CCCccCCCC
Q 017748 176 VAVFSLRVNSWRRIQ---DFPYFWVTGTCSVFVNGALHWTAALNQD-ADRNDIIIAFDLKSEEFYQVP---LPPIVGIEG 248 (366)
Q Consensus 176 ~~vyss~t~~W~~~~---~~~~~~~~~~~~v~~~G~lYw~~~~~~~-~~~~~~i~~fD~~~~~~~~i~---lP~~~~~~~ 248 (366)
..-|+.++..|++.. .+|... ...+++++++.+|-.++..+. +....-+.++|+++.+|+.+. -|+.-+
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR--- 182 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR--- 182 (392)
T ss_pred eeeeccccccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh---
Confidence 788999999998653 233322 223356677788877765432 111236899999999999983 233221
Q ss_pred ceEEEEEECCeEEEEEeecCCCCCCc-------EEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC
Q 017748 249 YYILLEALGGCLCLLCKFDDDDDDRP-------WDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR 321 (366)
Q Consensus 249 ~~~~l~~~~g~L~l~~~~~~~~~~~~-------l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~ 321 (366)
..-.-.+++|..|++++..+..++.+ -.|-.|+- ..+.|.+-..-+..+.+-.+-..+.-+| ++++-...
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGY 259 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGY 259 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcc-eEEEeccc
Confidence 12234566899999988765321110 12223333 2356887533332221112222233345 66655332
Q ss_pred --------CeEEEEeCCCCeEEEeeeecCcc
Q 017748 322 --------GDLCWYDLERHRVRSIVEIDDKV 344 (366)
Q Consensus 322 --------~~~~~yd~~t~~~~~v~~~~~~~ 344 (366)
..++.||++|..|..+ +..|+.
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~I-~~~Gk~ 289 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSVI-SVRGKY 289 (392)
T ss_pred chhhhhhhcceeecccccchheee-eccCCC
Confidence 1399999999999999 888743
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.99 E-value=0.00077 Score=64.41 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=123.2
Q ss_pred cEEEEEeccccceeecCCcCCCCCC-CCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc--
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSR-CVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY-- 194 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~-- 194 (366)
.++ |+|--+..|............ ....+.+++ ++-++.............++.|+..|++|+.+.....
T Consensus 89 dl~-~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLY-VLDLESQLWTKPAATGDEPSPRYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeE-EeecCCcccccccccCCCCCcccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC
Confidence 488 999999888876543322111 012223333 2222222221122335689999999999998753322
Q ss_pred -ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 195 -FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 195 -~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
.. .....+.++.++|..++..........+.+||+++.+|..+.........+....++..+++++++.+... ....
T Consensus 162 ~~r-~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~-~~~~ 239 (482)
T KOG0379|consen 162 PPR-AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD-GDVY 239 (482)
T ss_pred CCc-ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc-CCce
Confidence 22 23335667778888877664443567899999999999988543332122245567888999999888662 1111
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEe-eC-------CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHA-VR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~-~~-------~~~~~yd~~t~~~~~v 337 (366)
-=++|.|+-. ..+|.++.......- +..+...+..+ .+++.. .. ..++.||.+++.|.++
T Consensus 240 l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~~~--~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 240 LNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVSGD--HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred ecceEeeecc--cceeeeccccCCCCCCcceeeeEEECC--EEEEEcCCcccccccccccccccccccceeee
Confidence 3378888863 366886544332211 22444443322 444442 21 2389999999999999
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.93 E-value=0.00012 Score=63.85 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCCc----HHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHH
Q 017748 4 SVQLP----LDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNR 46 (366)
Q Consensus 4 ~~~LP----~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~ 46 (366)
+..|| +++.+.||+.|...+|..|..|||+|+++++++...+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35689 99999999999999999999999999999999876554
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.91 E-value=0.00074 Score=64.53 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=105.9
Q ss_pred EEEEEEecCCcEEEccC---CCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCC
Q 017748 175 EVAVFSLRVNSWRRIQD---FPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIE 247 (366)
Q Consensus 175 ~~~vyss~t~~W~~~~~---~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~ 247 (366)
.+.+++.++..|..... .|... .....++++..+|.+++..........+..||+.+.+|..+. .|...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r-~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r--- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR-YGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR--- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc-cceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc---
Confidence 69999999999976542 23222 334467899999999987742333458999999999998872 24333
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEee-C-C--
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAV-R-G-- 322 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~-~-~-- 322 (366)
..-.++..+.+|++.++..... ...-++|+++-. ..+|.++.+.+...- +..+.+++.++. +++... + +
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~-~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~--~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTG-DSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNK--LLVFGGGDDGDV 238 (482)
T ss_pred -ccceEEEECCEEEEECCccCcc-cceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCe--EEEEeccccCCc
Confidence 3445677789999998876532 145688998873 356999988866443 234445555443 444332 2 1
Q ss_pred ---eEEEEeCCCCeEEEeeeecC
Q 017748 323 ---DLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 323 ---~~~~yd~~t~~~~~v~~~~~ 342 (366)
.+..+|+.+.+|+++ ...+
T Consensus 239 ~l~D~~~ldl~~~~W~~~-~~~g 260 (482)
T KOG0379|consen 239 YLNDVHILDLSTWEWKLL-PTGG 260 (482)
T ss_pred eecceEeeecccceeeec-cccC
Confidence 399999999999977 5444
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.2e-05 Score=68.96 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDF 43 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F 43 (366)
+..||||+++.||+.||.|+|+++..|||+|+++.++.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999999999999999999877654
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.45 E-value=0.019 Score=51.86 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=76.2
Q ss_pred ccEEEEEEecCCcEEEccCC--CcceecCCcceEECCcEEEEEeeCCCC----C-CCcEEEEEECCCceeeeeCCCCccC
Q 017748 173 YTEVAVFSLRVNSWRRIQDF--PYFWVTGTCSVFVNGALHWTAALNQDA----D-RNDIIIAFDLKSEEFYQVPLPPIVG 245 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~--~~~~~~~~~~v~~~G~lYw~~~~~~~~----~-~~~~i~~fD~~~~~~~~i~lP~~~~ 245 (366)
......|+..+++|+.+..+ |......+..|.-.|.+|..++.-..+ . ...-+-.||+.+.+|..+.++...
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P- 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP- 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC-
Confidence 34678899999999988643 333223443344447666666544321 1 223688999999999999888765
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCC--CcEEEEEeccCCCCCceEEEEE
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDD--RPWDLWVMKEYGVNDSWTKLAT 294 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~--~~l~iW~l~~~~~~~~W~~~~~ 294 (366)
..+..-.+++...+|.++++..+.+.. ---+||.++= ...+|+++..
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep 224 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP 224 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC
Confidence 223444688899999998886653211 1125666554 2357999876
No 34
>PF13964 Kelch_6: Kelch motif
Probab=96.98 E-value=0.0019 Score=40.63 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=34.1
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCC
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPP 242 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~ 242 (366)
..+.++|.||.+++..........+..||+++++|+.+ ++|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 46889999999998875333446899999999999998 6664
No 35
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.85 E-value=0.00038 Score=60.26 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHccCC-----cccceeeeccchhhhhhcCChhHHHHHHh
Q 017748 4 SVQLPLDLIVDILIRLP-----VRSLARFRCVSRSFRSLIDGQDFVNRYVN 49 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP-----~~~l~r~r~VcK~W~~li~s~~F~~~~~~ 49 (366)
++.||||+|.+||.|+= ..+|.++.+|||.|+-..++|+|.+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 57899999999999874 58999999999999999999999887544
No 36
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.68 E-value=0.11 Score=45.03 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=82.8
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCC--------CCceEEEEEECCeEEEEEeecCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGI--------EGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~--------~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+..|+-||.+|+..... ..|+.||+.++... ...||..... ......+++-+..|.++....+.
T Consensus 72 tG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~- 144 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN- 144 (250)
T ss_pred CCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-
Confidence 44678999999998755 48999999999998 7788876511 12346788888889988776542
Q ss_pred CCCcEEEEEeccC--CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC----e-EEEEeCCCCeEEEeeeec
Q 017748 271 DDRPWDLWVMKEY--GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG----D-LCWYDLERHRVRSIVEID 341 (366)
Q Consensus 271 ~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~----~-~~~yd~~t~~~~~v~~~~ 341 (366)
...+.|-.|+.. ..+..|..-. +... --.+|-.+| .++...... + .++||+.+++-+.+ .|.
T Consensus 145 -~g~ivvskld~~tL~v~~tw~T~~--~k~~----~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~ 213 (250)
T PF02191_consen 145 -NGNIVVSKLDPETLSVEQTWNTSY--PKRS----AGNAFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIP 213 (250)
T ss_pred -CCcEEEEeeCcccCceEEEEEecc--Cchh----hcceeeEee-EEEEEEECCCCCcEEEEEEECCCCceece-eee
Confidence 124777777754 2345566422 1111 112333345 666654322 2 79999999999887 664
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.55 E-value=0.0052 Score=37.94 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=34.0
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCC
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLP 241 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 241 (366)
..+.++|.+|.+++..........+..||+++++|..+ +||
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 46889999999998876445567999999999999887 554
No 38
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.063 Score=47.70 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=79.2
Q ss_pred ccEEEEEEecCCcEEEccCC-CcceecCCcceEECC-cEEEEEeeCCC--------------------------------
Q 017748 173 YTEVAVFSLRVNSWRRIQDF-PYFWVTGTCSVFVNG-ALHWTAALNQD-------------------------------- 218 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~v~~~G-~lYw~~~~~~~-------------------------------- 218 (366)
...+..|++.+++|..++.. |.. .....++..++ .+|+.++....
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 34678899999999988754 444 22233455555 88887754321
Q ss_pred -CCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 219 -ADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 219 -~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
......+++||+.+++|+.. ..|...+. ...++.-+++|.++..+-.+ .-+...+|+.+-.+...+|.++..++
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gsa~~~~~n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNA---GSAVVIKGNKLTLINGEIKP-GLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCcc---CcceeecCCeEEEEcceecC-CccccceeEEEeccCceeeeeccCCC
Confidence 11345899999999999988 68876622 12233345678888886553 34466677766544557899987766
Q ss_pred cC
Q 017748 297 NV 298 (366)
Q Consensus 297 ~~ 298 (366)
..
T Consensus 267 ~~ 268 (381)
T COG3055 267 AP 268 (381)
T ss_pred CC
Confidence 53
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.30 E-value=0.47 Score=45.99 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 467999999999999999999999999999999998765554
No 40
>smart00284 OLF Olfactomedin-like domains.
Probab=96.28 E-value=0.18 Score=43.42 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=81.4
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc-CC-------CCceEEEEEECCeEEEEEeecCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV-GI-------EGYYILLEALGGCLCLLCKFDDDD 270 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~-~~-------~~~~~~l~~~~g~L~l~~~~~~~~ 270 (366)
+..|+-||.+|+..... ..|+.||+.+++.... .||... .. ....+.+++-+..|.++......
T Consensus 77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~- 149 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN- 149 (255)
T ss_pred ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-
Confidence 44789999999976554 4799999999999644 677532 11 12357889989999998776542
Q ss_pred CCCcEEEEEeccCC--CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee----CCe-EEEEeCCCCeEEEeeeec
Q 017748 271 DDRPWDLWVMKEYG--VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV----RGD-LCWYDLERHRVRSIVEID 341 (366)
Q Consensus 271 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~----~~~-~~~yd~~t~~~~~v~~~~ 341 (366)
...|.|-.|+... .++.|..-+.-... -.+|-.+| .++.... +.+ .++||+.|++-+.+ .|.
T Consensus 150 -~g~ivvSkLnp~tL~ve~tW~T~~~k~sa------~naFmvCG-vLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~ 218 (255)
T smart00284 150 -AGKIVISKLNPATLTIENTWITTYNKRSA------SNAFMICG-ILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIP 218 (255)
T ss_pred -CCCEEEEeeCcccceEEEEEEcCCCcccc------cccEEEee-EEEEEccCCCCCcEEEEEEECCCCcccee-eee
Confidence 2278888888642 24556652221111 12333345 5666542 222 89999999998777 553
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.16 E-value=0.71 Score=39.39 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=95.5
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.+.+......++ .+|+.|++..+--..+..... . +....=+|++.. . ...+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~-~~d~~tG~~~W~~~~~~~~~~---~-------~~~~~~~v~v~~--~----~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 35 DGGRVYVASGDGNLY-ALDAKTGKVLWRFDLPGPISG---A-------PVVDGGRVYVGT--S----DGSLYALDAKTGK 97 (238)
T ss_dssp ETTEEEEEETTSEEE-EEETTTSEEEEEEECSSCGGS---G-------EEEETTEEEEEE--T----TSEEEEEETTTSC
T ss_pred eCCEEEEEcCCCEEE-EEECCCCCEEEEeeccccccc---e-------eeeccccccccc--c----eeeeEecccCCcc
Confidence 677777776677888 999999986553333222111 1 110111233222 1 226777776554
Q ss_pred -cEE-EccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--ee-eCCCCccCC----CCceEEEE
Q 017748 185 -SWR-RIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQ-VPLPPIVGI----EGYYILLE 254 (366)
Q Consensus 185 -~W~-~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~-i~lP~~~~~----~~~~~~l~ 254 (366)
.|+ .....+. .........+.++.+|.....+ .|.++|+++.+- .. +..|..... ......+.
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 698 3433221 1112222333345555554333 799999997654 33 233332110 01123444
Q ss_pred EECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE-EecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 255 ALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV-YSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 255 ~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~-~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
..+|.+++...... .+.+ -+.. .+..|+.. +.. +.. ....++.|++...+++++++|++|++
T Consensus 171 ~~~~~v~~~~~~g~-----~~~~-d~~t--g~~~w~~~--~~~-------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 171 ISDGRVYVSSGDGR-----VVAV-DLAT--GEKLWSKP--ISG-------IYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCTTEEEEECCTSS-----EEEE-ETTT--TEEEEEEC--SS--------ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EECCEEEEEcCCCe-----EEEE-ECCC--CCEEEEec--CCC-------ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 44676666544321 2322 2222 22236321 111 111 23445588888777889999999999
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
..+.
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 8764
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.58 E-value=0.034 Score=34.65 Aligned_cols=39 Identities=10% Similarity=0.322 Sum_probs=31.4
Q ss_pred cceEECCcEEEEEee--CCCCCCCcEEEEEECCCceeeeeC
Q 017748 201 CSVFVNGALHWTAAL--NQDADRNDIIIAFDLKSEEFYQVP 239 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~--~~~~~~~~~i~~fD~~~~~~~~i~ 239 (366)
.++.++|+||.+++. .........+..||+++++|+.++
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 467899999999988 333344568999999999999884
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.43 E-value=1.5 Score=37.45 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=78.2
Q ss_pred EEEEEEecCC--cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceE
Q 017748 175 EVAVFSLRVN--SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYI 251 (366)
Q Consensus 175 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~ 251 (366)
.+..++..++ .|+.--...... .....+.-+|.+|..... ..+.++|..+++... ..++.... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~----~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGG-PVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPIS----GA 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSS-EEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGG----SG
T ss_pred EEEEEECCCCCEEEEEECCCCCCC-ccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeecccccc----ce
Confidence 4566776554 587632111110 111133467777777433 389999997765433 34454431 11
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE-EEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK-LATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE 330 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~ 330 (366)
....++++++... + . .++.++...++..|.. ...-+.... ..+......++.+++...++.++++|++
T Consensus 72 -~~~~~~~v~v~~~--~-----~-~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 72 -PVVDGGRVYVGTS--D-----G-SLYALDAKTGKVLWSIYLTSSPPAGV--RSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp -EEEETTEEEEEET--T-----S-EEEEEETTTSCEEEEEEE-SSCTCST--B--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred -eeecccccccccc--e-----e-eeEecccCCcceeeeecccccccccc--ccccCceEecCEEEEEeccCcEEEEecC
Confidence 3666788877662 1 2 5566663223466884 332222221 2222222225578777767789999999
Q ss_pred CCeEEEeeee
Q 017748 331 RHRVRSIVEI 340 (366)
Q Consensus 331 t~~~~~v~~~ 340 (366)
+++..+-+.+
T Consensus 141 tG~~~w~~~~ 150 (238)
T PF13360_consen 141 TGKLLWKYPV 150 (238)
T ss_dssp TTEEEEEEES
T ss_pred CCcEEEEeec
Confidence 9998766455
No 44
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.05 E-value=3 Score=38.93 Aligned_cols=113 Identities=22% Similarity=0.353 Sum_probs=64.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~i 277 (366)
..++..+|.+|.....+ .+.++|.++.+ |.. +++.. ..++..+|+||+..... . +
T Consensus 250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~-------~~~~~~~~~vy~~~~~g------~--l 306 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSV-------NDFAVDGGRIYLVDQND------R--V 306 (394)
T ss_pred CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCc-------cCcEEECCEEEEEcCCC------e--E
Confidence 45778899999877544 79999998754 543 22211 12344567777655321 2 2
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
..++....+..|..-. +.... ...|... +| .|++...++.++++|.++++..+-.++.
T Consensus 307 ~ald~~tG~~~W~~~~-~~~~~--~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 307 YALDTRGGVELWSQSD-LLHRL--LTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred EEEECCCCcEEEcccc-cCCCc--ccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 2233222234464311 11111 1334432 34 8888888888999999999877654554
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.89 E-value=1.2 Score=38.32 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=94.5
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC----ceeeeeCCCCccCCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS----EEFYQVPLPPIVGIEG 248 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~----~~~~~i~lP~~~~~~~ 248 (366)
.....+|+..+++++.+.-....+ ....++.-||.+.-.++...+. ..+-.|++.+ ..|. +.+..+...+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~F-CSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~--e~~~~m~~~R 118 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTF-CSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWT--ESPNDMQSGR 118 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCc-ccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCce--ECcccccCCC
Confidence 456789999999999875332222 2233456788888776654432 3577788765 3443 3333343344
Q ss_pred ceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC-CCCceEEEEEec-cCCCceeeEEEEecCCcEEEEEeeCCeEE
Q 017748 249 YYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG-VNDSWTKLATLL-NVGGGNVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 249 ~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
+.+....+ +|++.++++.... ..+.|=-.... ....|....... ......+-.+.+..+| +||+..+.. -.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~-s~ 192 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRG-SI 192 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCC-cE
Confidence 66666665 7899999987754 44443221111 111222221111 1111225556677788 777776654 78
Q ss_pred EEeCCCCeE-EEeeeecCcccCeeeeeEEecCcc
Q 017748 326 WYDLERHRV-RSIVEIDDKVRRCDMRTVCVNTLV 358 (366)
Q Consensus 326 ~yd~~t~~~-~~v~~~~~~~~~~~~~~~y~~sl~ 358 (366)
.||.+++++ +.+=.+.| -.+..+..-|-|
T Consensus 193 i~d~~~n~v~~~lP~lPg----~~R~YP~sgssv 222 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPG----GPRNYPASGSSV 222 (243)
T ss_pred EEeCCCCeEEeeCCCCCC----CceecCCCcceE
Confidence 889999977 45423333 244445544444
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.78 E-value=3.4 Score=38.23 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=64.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLW 278 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW 278 (366)
..++..+|.+|.....+ .+.++|.++.+.... +.+. ....+..+|.+|+... +. .+..+
T Consensus 235 ~~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~~~~~-------~~~p~~~~~~vyv~~~-~G-----~l~~~ 294 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKRDASS-------YQGPAVDDNRLYVTDA-DG-----VVVAL 294 (377)
T ss_pred CccEEECCEEEEEEcCC-------EEEEEECCCCcEEEeeccCC-------ccCceEeCCEEEEECC-CC-----eEEEE
Confidence 34667888888876554 799999987543221 2221 1123345666666542 11 34333
Q ss_pred EeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 279 VMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 279 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
..++ ++..|.... +..... ..|.. .++.|++...++.++++|.++++..+-+.+.+
T Consensus 295 d~~t--G~~~W~~~~-~~~~~~--ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 295 DRRS--GSELWKNDE-LKYRQL--TAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ECCC--CcEEEcccc-ccCCcc--ccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 3332 234465421 111111 33333 23488888878889999999998876546554
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.55 E-value=4 Score=38.06 Aligned_cols=190 Identities=9% Similarity=-0.004 Sum_probs=98.6
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.|.+......++ .+|+.|++.++--..+... .+...+. +. +|+... ....+..++..++
T Consensus 119 ~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~----~ssP~v~-----~~-~v~v~~------~~g~l~ald~~tG~ 181 (394)
T PRK11138 119 AGGKVYIGSEKGQVY-ALNAEDGEVAWQTKVAGEA----LSRPVVS-----DG-LVLVHT------SNGMLQALNESDGA 181 (394)
T ss_pred ECCEEEEEcCCCEEE-EEECCCCCCcccccCCCce----ecCCEEE-----CC-EEEEEC------CCCEEEEEEccCCC
Confidence 466776665566788 8999998754422211110 0000111 12 222221 1335677777665
Q ss_pred -cEEEccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eee-eCCCCccCC----CCceEEEEE
Q 017748 185 -SWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQ-VPLPPIVGI----EGYYILLEA 255 (366)
Q Consensus 185 -~W~~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~----~~~~~~l~~ 255 (366)
.|+.-...+. .......++..+|.+|+....+ .+.++|.++.+ |+. +..|..... ......-+.
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCCCcEE
Confidence 5886433221 1112345677888888765443 79999998764 542 223322100 000112234
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|.|++.... . . +..++-..++..|.+.. . .. ..+. ..++.||+...+++++++|.++++..
T Consensus 255 ~~~~vy~~~~~-g-----~--l~ald~~tG~~~W~~~~--~--~~--~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 255 VGGVVYALAYN-G-----N--LVALDLRSGQIVWKREY--G--SV--NDFA---VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ECCEEEEEEcC-C-----e--EEEEECCCCCEEEeecC--C--Cc--cCcE---EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 57777775532 1 2 33444332345576531 1 11 1221 23458999888888999999998754
Q ss_pred E
Q 017748 336 S 336 (366)
Q Consensus 336 ~ 336 (366)
+
T Consensus 318 W 318 (394)
T PRK11138 318 W 318 (394)
T ss_pred E
Confidence 4
No 48
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.36 E-value=1.5 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred ceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC--CC---c
Q 017748 99 FGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP--MN---Y 173 (366)
Q Consensus 99 ~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~--~~---~ 173 (366)
.+.+.+..+.-|+..+.....+ |+++.|+....+|.+..+... .+.+.. .+ +|.++...... .. .
T Consensus 68 ~~~F~al~gskIv~~d~~~~t~-vyDt~t~av~~~P~l~~pk~~----pisv~V---G~--~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQSGRTL-VYDTDTRAVATGPRLHSPKRC----PISVSV---GD--KLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred eeEEEEecCCeEEEEcCCCCeE-EEECCCCeEeccCCCCCCCcc----eEEEEe---CC--eEEEeeccCccccccCccc
Confidence 3445555455554444446677 999999999999987654321 122221 12 25555332211 11 0
Q ss_pred cEEEEE--E--------ecCCcEEEccCCCcceec------CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee
Q 017748 174 TEVAVF--S--------LRVNSWRRIQDFPYFWVT------GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ 237 (366)
Q Consensus 174 ~~~~vy--s--------s~t~~W~~~~~~~~~~~~------~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~ 237 (366)
..+|++ + .++-+|+.++.+|+.... -.+-++++|.--|+...+.. ..-.+||+++.+|+.
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----WGTYSFDTESHEWRK 213 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----eEEEEEEcCCcceee
Confidence 144554 3 123478888877754431 12223338888888665411 269999999999988
Q ss_pred e---CCCCcc
Q 017748 238 V---PLPPIV 244 (366)
Q Consensus 238 i---~lP~~~ 244 (366)
. .||-..
T Consensus 214 ~GdW~LPF~G 223 (342)
T PF07893_consen 214 HGDWMLPFHG 223 (342)
T ss_pred ccceecCcCC
Confidence 7 788754
No 49
>smart00612 Kelch Kelch domain.
Probab=94.24 E-value=0.078 Score=32.22 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.3
Q ss_pred ccEEEEEEecCCcEEEccCCCcce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
...+++|+.++++|+..+.++...
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcc
Confidence 567899999999999998887654
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.04 E-value=2 Score=39.32 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=62.9
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCC-----cEEEEEecc----CCCCCceEEEEE
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDR-----PWDLWVMKE----YGVNDSWTKLAT 294 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~-----~l~iW~l~~----~~~~~~W~~~~~ 294 (366)
..+.||.++...... |.-.... .....+..+|+||+........... .+++-.... ......|.=..
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk-~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPK-RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCC-cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 599999999887754 3322111 2344555688999988765421111 333432221 11223344322
Q ss_pred eccCCCc----e----eeEEEEecCCcEEEEEeeCC--eEEEEeCCCCeEEEe
Q 017748 295 LLNVGGG----N----VKPLVYSRSEDKVLLHAVRG--DLCWYDLERHRVRSI 337 (366)
Q Consensus 295 i~~~~~~----~----~~~~~~~~~g~~i~~~~~~~--~~~~yd~~t~~~~~v 337 (366)
+|...+. . ..-.+++ +|..|++...+. ..++||.++.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 4433331 0 3334566 677899977654 699999999999998
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=93.66 E-value=0.1 Score=32.40 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=24.2
Q ss_pred ceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCC
Q 017748 202 SVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLP 241 (366)
Q Consensus 202 ~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 241 (366)
++.+ ++.+|..++..........+..||+++++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4556 588888887664332334789999999999998 444
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.47 E-value=3.3 Score=38.46 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=106.0
Q ss_pred eccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcc
Q 017748 124 NPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCS 202 (366)
Q Consensus 124 NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~ 202 (366)
+|-++.|...-.++.... ..+...+.|.|.. .|-++... ...+++|++.+.+=+. +...... ...-.
T Consensus 8 t~e~~~w~~~~~~~~~ke--~~~vssl~fsp~~-P~d~aVt~-------S~rvqly~~~~~~~~k~~srFk~~--v~s~~ 75 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKE--HNSVSSLCFSPKH-PYDFAVTS-------SVRVQLYSSVTRSVRKTFSRFKDV--VYSVD 75 (487)
T ss_pred Cccchhhhhhcccccccc--cCcceeEecCCCC-CCceEEec-------ccEEEEEecchhhhhhhHHhhccc--eeEEE
Confidence 555666666544433222 2345567776752 23333322 5579999998765432 2222111 11112
Q ss_pred eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eee---CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEE
Q 017748 203 VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQV---PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLW 278 (366)
Q Consensus 203 v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i---~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW 278 (366)
...||.+...++.. ..|-.||..+... +.+ +.|... ......++.+.+.+..+. ...+|
T Consensus 76 fR~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~~------~~f~~~d~t~l~s~sDd~-----v~k~~ 138 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVHV------TKFSPQDNTMLVSGSDDK-----VVKYW 138 (487)
T ss_pred eecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCceeE------EEecccCCeEEEecCCCc-----eEEEE
Confidence 34569998887765 3799999665322 222 233322 223334555555444433 78889
Q ss_pred EeccCCCCCceEEEEEecc-CCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecC
Q 017748 279 VMKEYGVNDSWTKLATLLN-VGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNT 356 (366)
Q Consensus 279 ~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~s 356 (366)
.+... . + ...+.- .. ..+-..+....+.|++.. .|+.+-.||.++.+ .+++++.. +..-..++|.+|
T Consensus 139 d~s~a---~--v-~~~l~~htD--YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnh--g~pVe~vl~lps 207 (487)
T KOG0310|consen 139 DLSTA---Y--V-QAELSGHTD--YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNH--GCPVESVLALPS 207 (487)
T ss_pred EcCCc---E--E-EEEecCCcc--eeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecC--CCceeeEEEcCC
Confidence 88762 1 2 333322 12 244455555555677764 56779999999998 66657762 355666666666
No 53
>PF13964 Kelch_6: Kelch motif
Probab=93.12 E-value=0.15 Score=31.73 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.3
Q ss_pred CccEEEEEeccccceeecCCcCCC
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRD 139 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~ 139 (366)
...+. ++||.|++|..+|+++.+
T Consensus 27 ~~~v~-~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVE-RYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEE-EEcCCCCcEEECCCCCCC
Confidence 35577 999999999999998754
No 54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.70 E-value=4.8 Score=34.33 Aligned_cols=122 Identities=9% Similarity=0.072 Sum_probs=67.2
Q ss_pred EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccC--CCCceEEEEEEC--C--eEEEEEeecCCCCCCcEEE
Q 017748 204 FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVG--IEGYYILLEALG--G--CLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 204 ~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~--~~~~~~~l~~~~--g--~L~l~~~~~~~~~~~~l~i 277 (366)
.+||.+ .+... ..++..|+.|+++..++.|.... .......++... + ++..+............+|
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 368888 44432 26999999999999997665420 111112222211 2 3333322211112236677
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC------eEEEEeCCCCeEEE-eeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG------DLCWYDLERHRVRS-IVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~------~~~~yd~~t~~~~~-v~~~~ 341 (366)
+.+.. ++|..+...+.... ..+. ++.-+| .+++..... .+++||+++.+++. + .++
T Consensus 75 ys~~~----~~Wr~~~~~~~~~~-~~~~-~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i-~~P 137 (230)
T TIGR01640 75 YTLGS----NSWRTIECSPPHHP-LKSR-GVCING-VLYYLAYTLKTNPDYFIVSFDVSSERFKEFI-PLP 137 (230)
T ss_pred EEeCC----CCccccccCCCCcc-ccCC-eEEECC-EEEEEEEECCCCCcEEEEEEEcccceEeeee-ecC
Confidence 77765 47998763222111 1222 555566 677764321 59999999999995 6 554
No 55
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.45 E-value=2.8 Score=42.56 Aligned_cols=126 Identities=17% Similarity=-0.003 Sum_probs=68.7
Q ss_pred cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC--ceeeee-CCCCcc-----C-----------------------C
Q 017748 198 TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS--EEFYQV-PLPPIV-----G-----------------------I 246 (366)
Q Consensus 198 ~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~--~~~~~i-~lP~~~-----~-----------------------~ 246 (366)
....++.++|++|..+..+ .++++|.++ +.|+.- ..+... . .
T Consensus 186 ~e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred cccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc
Confidence 3456899999999987654 799999986 456542 333210 0 0
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEE-EEeccCCCce-eeEEEEecCCcEEEEEee----
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL-ATLLNVGGGN-VKPLVYSRSEDKVLLHAV---- 320 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~-~~i~~~~~~~-~~~~~~~~~g~~i~~~~~---- 320 (366)
....+.+...+|+|+.+.... .-.+|.+...+. ..|.+- ...+...... ..|+.+ ++.|++...
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~T------Gk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~---~g~VIvG~~v~d~ 328 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADT------GKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVA---GTTVVIGGRVADN 328 (764)
T ss_pred cCCEEEEecCCCeEEEEECCC------CCEEEEecCCCc-eeeecccCcCCCcccccccCCEEE---CCEEEEEeccccc
Confidence 111333444556666555543 345677665432 224431 1111111111 223333 236776532
Q ss_pred ------CCeEEEEeCCCCeEEEeeee
Q 017748 321 ------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 321 ------~~~~~~yd~~t~~~~~v~~~ 340 (366)
++.+.+||.+|++..+-.+.
T Consensus 329 ~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 329 YSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ccccCCCcEEEEEECCCCcEeeEEec
Confidence 35699999999998887554
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.44 E-value=8.9 Score=35.42 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
.+|.+.+......++ .+|+.|++.++--...... .....+ .++ +|+... ....+..++..++
T Consensus 104 ~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~----~~~p~v-----~~~-~v~v~~------~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 104 DGGLVFVGTEKGEVI-ALDAEDGKELWRAKLSSEV----LSPPLV-----ANG-LVVVRT------NDGRLTALDAATGE 166 (377)
T ss_pred cCCEEEEEcCCCEEE-EEECCCCcEeeeeccCcee----ecCCEE-----ECC-EEEEEC------CCCeEEEEEcCCCc
Confidence 466666665556677 8888887754421111110 000001 112 233221 1334667776554
Q ss_pred -cEEEccCCCc-ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeee-eCCCCccCC----CCceEEEEE
Q 017748 185 -SWRRIQDFPY-FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQ-VPLPPIVGI----EGYYILLEA 255 (366)
Q Consensus 185 -~W~~~~~~~~-~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~-i~lP~~~~~----~~~~~~l~~ 255 (366)
.|+.-...+. .......++..+|.+|.-...+ .+.++|++++ .|+. +..|..... .........
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 5875432221 1112344677888776544332 7999999875 4532 223321100 000112233
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|.+++... .. .+..+..+. .+..|.... ... ..|. + .++.|++...++.++++|..+++..
T Consensus 240 ~~~~vy~~~~-~g-----~l~a~d~~t--G~~~W~~~~----~~~--~~p~-~--~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 240 DGGQVYAVSY-QG-----RVAALDLRS--GRVLWKRDA----SSY--QGPA-V--DDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred ECCEEEEEEc-CC-----EEEEEECCC--CcEEEeecc----CCc--cCce-E--eCCEEEEECCCCeEEEEECCCCcEE
Confidence 4666666543 22 444444443 234576531 111 2222 2 3448888887888999999998754
Q ss_pred E
Q 017748 336 S 336 (366)
Q Consensus 336 ~ 336 (366)
+
T Consensus 303 W 303 (377)
T TIGR03300 303 W 303 (377)
T ss_pred E
Confidence 4
No 57
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.43 E-value=0.25 Score=30.13 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCCccEEEEEEecCCcEEEccCCC
Q 017748 170 PMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 170 ~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
......+++|+..+++|+.+++||
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CceeeeEEEEeCCCCEEEEcCCCC
Confidence 456779999999999999988775
No 58
>smart00612 Kelch Kelch domain.
Probab=92.21 E-value=0.48 Score=28.58 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=23.1
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc
Q 017748 209 LHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV 244 (366)
Q Consensus 209 lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 244 (366)
+|.+++... ......+.+||+++++|+.+ ++|...
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCcc
Confidence 455554432 12234789999999999887 666554
No 59
>PLN02772 guanylate kinase
Probab=92.17 E-value=0.92 Score=41.81 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=54.4
Q ss_pred CCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 199 GTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 199 ~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
...++.++.++|.+++..+.......+.+||..+.+|.... .|... + .+..+..-+++|.++...... .
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r--~-GhSa~v~~~~rilv~~~~~~~----~ 99 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC--K-GYSAVVLNKDRILVIKKGSAP----D 99 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC--C-cceEEEECCceEEEEeCCCCC----c
Confidence 35588999999999986654323468999999999997652 33332 1 244445557899998876554 4
Q ss_pred EEEEEeccC
Q 017748 275 WDLWVMKEY 283 (366)
Q Consensus 275 l~iW~l~~~ 283 (366)
=++|.|+-.
T Consensus 100 ~~~w~l~~~ 108 (398)
T PLN02772 100 DSIWFLEVD 108 (398)
T ss_pred cceEEEEcC
Confidence 678988753
No 60
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=92.17 E-value=1.2 Score=34.34 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEEECCCc--eeeeeCCCCccC----C------CCceEEEEEECCeEEEEEeecCC-----CCCCcEEEEEeccC-CC
Q 017748 224 IIIAFDLKSE--EFYQVPLPPIVG----I------EGYYILLEALGGCLCLLCKFDDD-----DDDRPWDLWVMKEY-GV 285 (366)
Q Consensus 224 ~i~~fD~~~~--~~~~i~lP~~~~----~------~~~~~~l~~~~g~L~l~~~~~~~-----~~~~~l~iW~l~~~-~~ 285 (366)
.|+.+|+-.+ .++.++||.... . ......+++.+|+|-++...... .....+.+|.|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5888999865 667788887651 1 12345788899999998886542 24557899999985 23
Q ss_pred CCceEEEEEeccCCC
Q 017748 286 NDSWTKLATLLNVGG 300 (366)
Q Consensus 286 ~~~W~~~~~i~~~~~ 300 (366)
..+|.+-+++....+
T Consensus 87 ~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCEEEeEEEEhhhc
Confidence 567999998887554
No 61
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.08 E-value=0.59 Score=28.90 Aligned_cols=43 Identities=21% Similarity=0.506 Sum_probs=30.5
Q ss_pred EEEEEECCeEEEEEee-cCCCCCCcEEEEEeccCCCCCceEEEEEe
Q 017748 251 ILLEALGGCLCLLCKF-DDDDDDRPWDLWVMKEYGVNDSWTKLATL 295 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~-~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 295 (366)
...++.+++|++++.. ........-++|.++.. +.+|.++..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence 3456789999999998 22233446788888873 4789987654
No 62
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.91 E-value=13 Score=34.08 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=100.8
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-cEEEccCC-------C
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-SWRRIQDF-------P 193 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~W~~~~~~-------~ 193 (366)
-+++.+++...+-..+.. ....+.+..++. +.|-+++-.. ...+.+|+..+. +=...... |
T Consensus 68 ~i~~~~g~L~~~~~~~~~----g~~p~~i~~~~~-g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 68 RIDPDTGTLTLLNSVPSG----GSSPCHIAVDPD-GRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp EEETTTTEEEEEEEEEES----SSCEEEEEECTT-SSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred EECCCcceeEEeeeeccC----CCCcEEEEEecC-CCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCC
Confidence 345555555555443321 224456677664 4455554321 556788888663 22211100 0
Q ss_pred ---cceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce--ee---eeCCCCccCCCCceEEEEEE-CC-eEE
Q 017748 194 ---YFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE--FY---QVPLPPIVGIEGYYILLEAL-GG-CLC 261 (366)
Q Consensus 194 ---~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~---~i~lP~~~~~~~~~~~l~~~-~g-~L~ 261 (366)
.........+.. +|...|+...+. ..|..|++..+. .. .+.+|... ....++.. +| .+|
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~----GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGS----GPRHLAFSPDGKYAY 207 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTS----SEEEEEE-TTSSEEE
T ss_pred cccccccccceeEEECCCCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCC----CCcEEEEcCCcCEEE
Confidence 000011123333 477777776653 478888887665 43 34666654 23344443 34 556
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC---c--eeeEEEEecCCcEEEEEee-CCeEEEEeC--CCCe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG---G--NVKPLVYSRSEDKVLLHAV-RGDLCWYDL--ERHR 333 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~~g~~i~~~~~-~~~~~~yd~--~t~~ 333 (366)
++..... .+.++.++.. ...+..+.+++...- + ...-+.+.++|+.||+... .+.+.+|++ ++++
T Consensus 208 v~~e~s~-----~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 208 VVNELSN-----TVSVFDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp EEETTTT-----EEEEEEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred EecCCCC-----cEEEEeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 6555443 8999888842 246777777764321 1 2445667788866777554 345777876 6678
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
++.+
T Consensus 281 l~~~ 284 (345)
T PF10282_consen 281 LTLV 284 (345)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8877
No 63
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.71 E-value=15 Score=34.52 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=78.4
Q ss_pred cEEEEEEecCC-----cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce---eeeeCCCCccC
Q 017748 174 TEVAVFSLRVN-----SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE---FYQVPLPPIVG 245 (366)
Q Consensus 174 ~~~~vyss~t~-----~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~ 245 (366)
..+.+.+..++ .|+.+........ ...-..++.+|.++..+.. ...|++.|+.+-. |..+-.|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~--~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~- 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE--YYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDE- 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E--EEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SS-
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE--EEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCC-
Confidence 55666666553 6766532111110 1122347788888774422 2589999999765 5544333322
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG--- 322 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~--- 322 (366)
......+...++.|.+....+... .|.++-++ ..|.... ++....+.........+++.+++...+.
T Consensus 326 -~~~l~~~~~~~~~Lvl~~~~~~~~---~l~v~~~~-----~~~~~~~-~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P 395 (414)
T PF02897_consen 326 -DVSLEDVSLFKDYLVLSYRENGSS---RLRVYDLD-----DGKESRE-IPLPEAGSVSGVSGDFDSDELRFSYSSFTTP 395 (414)
T ss_dssp -SEEEEEEEEETTEEEEEEEETTEE---EEEEEETT------TEEEEE-EESSSSSEEEEEES-TT-SEEEEEEEETTEE
T ss_pred -ceeEEEEEEECCEEEEEEEECCcc---EEEEEECC-----CCcEEee-ecCCcceEEeccCCCCCCCEEEEEEeCCCCC
Confidence 112344555688999888876621 45555444 1244433 3222221112222234556788876543
Q ss_pred -eEEEEeCCCCeEEEe
Q 017748 323 -DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 -~~~~yd~~t~~~~~v 337 (366)
.++.||+++++.+.+
T Consensus 396 ~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 396 PTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEETTTTCEEEE
T ss_pred CEEEEEECCCCCEEEE
Confidence 499999999999877
No 64
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.48 E-value=10 Score=34.96 Aligned_cols=143 Identities=11% Similarity=-0.040 Sum_probs=81.4
Q ss_pred ccEEEEEEecCCcEEEc-cCCCcceecCCc-ceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCC-CccCCC
Q 017748 173 YTEVAVFSLRVNSWRRI-QDFPYFWVTGTC-SVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLP-PIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~-~~~~~~~~~~~~-~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP-~~~~~~ 247 (366)
.........++..|... ....... .... .++.+|++|.....+ .|.+||+++.. |+.-..+ ...
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~~~~~~-~~~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~--- 102 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGSGGGGI-YAGPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQ--- 102 (370)
T ss_pred ceEEEcccCcceeeeeecccCccce-EeccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCccee---
Confidence 34455566677788643 1111111 2222 589999999985544 69999999876 6544443 111
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
...-+...+|+|++-... . .++.++....+..|.....- . .....+.. ..++ .+++...++.+++.
T Consensus 103 -~~~~~~~~~G~i~~g~~~-------g-~~y~ld~~~G~~~W~~~~~~-~--~~~~~~~v-~~~~-~v~~~s~~g~~~al 168 (370)
T COG1520 103 -LSGPILGSDGKIYVGSWD-------G-KLYALDASTGTLVWSRNVGG-S--PYYASPPV-VGDG-TVYVGTDDGHLYAL 168 (370)
T ss_pred -ccCceEEeCCeEEEeccc-------c-eEEEEECCCCcEEEEEecCC-C--eEEecCcE-EcCc-EEEEecCCCeEEEE
Confidence 111223337776654432 1 56777774334567774333 1 11122222 2234 67777666789999
Q ss_pred eCCCCeEEEeeee
Q 017748 328 DLERHRVRSIVEI 340 (366)
Q Consensus 328 d~~t~~~~~v~~~ 340 (366)
|.+|++..+.+++
T Consensus 169 ~~~tG~~~W~~~~ 181 (370)
T COG1520 169 NADTGTLKWTYET 181 (370)
T ss_pred EccCCcEEEEEec
Confidence 9999988776444
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.44 E-value=11 Score=32.48 Aligned_cols=198 Identities=19% Similarity=0.180 Sum_probs=104.8
Q ss_pred ceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|-|.+.+ ...+++ .++|.+++...+..+. ..++.++...+ +++... .....+++..++.
T Consensus 11 ~g~l~~~D~~~~~i~-~~~~~~~~~~~~~~~~---------~~G~~~~~~~g--~l~v~~-------~~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIY-RVDPDTGEVEVIDLPG---------PNGMAFDRPDG--RLYVAD-------SGGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETTTTEEE-EEETTTTEEEEEESSS---------EEEEEEECTTS--EEEEEE-------TTCEEEEETTTTE
T ss_pred CCEEEEEEcCCCEEE-EEECCCCeEEEEecCC---------CceEEEEccCC--EEEEEE-------cCceEEEecCCCc
Confidence 44444444 567788 9999998876544332 23555553222 222221 4456777999999
Q ss_pred EEEccCCCcc---eecCCc-ceEECCcEEEEEeeCCCCCCC--cEEEEEECCCceeeee----CCCCccCCCCceEEEEE
Q 017748 186 WRRIQDFPYF---WVTGTC-SVFVNGALHWTAALNQDADRN--DIIIAFDLKSEEFYQV----PLPPIVGIEGYYILLEA 255 (366)
Q Consensus 186 W~~~~~~~~~---~~~~~~-~v~~~G~lYw~~~~~~~~~~~--~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~ 255 (366)
++.+...+.. ....+. .+--+|.+|+-.......... ..+..+|.. .+...+ ..|.. |+.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG---------i~~ 141 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG---------IAF 141 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE---------EEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc---------eEE
Confidence 9887654311 111221 233468876665443222222 579999999 554443 22222 222
Q ss_pred E-CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCC-ceeeEEEEecCCcEEEEEee-CCeEEEEeCC
Q 017748 256 L-GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGG-GNVKPLVYSRSEDKVLLHAV-RGDLCWYDLE 330 (366)
Q Consensus 256 ~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~-~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~ 330 (366)
. +| .||++... .-.||.++-......+.....+ ..... +...=+++..+| .|++... .+++..||++
T Consensus 142 s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 142 SPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT
T ss_pred CCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC
Confidence 2 45 45554443 2336666654333446655444 22221 123335555566 7777754 5679999999
Q ss_pred CCeEEEeeeecC
Q 017748 331 RHRVRSIVEIDD 342 (366)
Q Consensus 331 t~~~~~v~~~~~ 342 (366)
.+....+ ++..
T Consensus 214 G~~~~~i-~~p~ 224 (246)
T PF08450_consen 214 GKLLREI-ELPV 224 (246)
T ss_dssp SCEEEEE-E-SS
T ss_pred ccEEEEE-cCCC
Confidence 6666666 7764
No 66
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=90.17 E-value=1 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCcEEEEEeeC-CCCCCCcEEEEEECCCceeeee-CCCCcc
Q 017748 206 NGALHWTAALN-QDADRNDIIIAFDLKSEEFYQV-PLPPIV 244 (366)
Q Consensus 206 ~G~lYw~~~~~-~~~~~~~~i~~fD~~~~~~~~i-~lP~~~ 244 (366)
++.+|..++.. ........+.+||+.+.+|+.+ ++|...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 35667666655 2233345799999999999988 555544
No 67
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.87 E-value=6.5 Score=38.32 Aligned_cols=120 Identities=18% Similarity=0.100 Sum_probs=65.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccCC----CCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVGI----EGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~----~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..+++.+|.+|.....+ .|+++|.++. .|+.- ..|..... ......++..+|++++....
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------ 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------ 129 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC------
Confidence 45788999999866544 6999999864 55433 33322200 00112234556777764431
Q ss_pred CcEEEEEeccCCCCCceEEEEE-eccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLAT-LLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~-i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
=.+..|+...++..|..... ..........|+.. ++ .|++... ++.+++||.+|++..+-
T Consensus 130 --g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred --CEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 23555665434456765321 11000001234333 33 6777643 35699999999997765
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.50 E-value=5.6 Score=34.91 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
.+-+..++..++ .+++|++++.+.... +........ .-..+...+|.+|+....+..+-.||+.+++...
T Consensus 39 ~~~~~~A~SWD~-----tVR~wevq~~g~~~~---ka~~~~~~P--vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 39 ADNLLAAGSWDG-----TVRIWEVQNSGQLVP---KAQQSHDGP--VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred cCceEEecccCC-----ceEEEEEecCCcccc---hhhhccCCC--eEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 345555666666 899999998642111 111111111 2234455777788888888889999999999999
Q ss_pred eeeecC
Q 017748 337 IVEIDD 342 (366)
Q Consensus 337 v~~~~~ 342 (366)
| ..+.
T Consensus 109 v-~~Hd 113 (347)
T KOG0647|consen 109 V-AAHD 113 (347)
T ss_pred e-eecc
Confidence 9 6654
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.99 E-value=15 Score=32.04 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=80.2
Q ss_pred CCccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc-eeeeeCCCCccCCCCc
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE-EFYQVPLPPIVGIEGY 249 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~~~ 249 (366)
...+.+..|+..++.=.....+|...+.. ....+++.+|-++... .....||..+- .-..++.|. .
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~d~l~qLTWk~------~~~f~yd~~tl~~~~~~~y~~------E 131 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILGDKLYQLTWKE------GTGFVYDPNTLKKIGTFPYPG------E 131 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEE-SS------S
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccce-eEEEECCEEEEEEecC------CeEEEEccccceEEEEEecCC------c
Confidence 44678889999988754444555443322 2456899999999876 48999999863 333445543 2
Q ss_pred eEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC----ceeeEEEEecCCcEEEEEee-CCeE
Q 017748 250 YILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG----GNVKPLVYSRSEDKVLLHAV-RGDL 324 (366)
Q Consensus 250 ~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~----~~~~~~~~~~~g~~i~~~~~-~~~~ 324 (366)
..-|+.-+..|++-.+. =.++.++.. ....+.+|..... +..--+=+ .+| .|+-.-. ...+
T Consensus 132 GWGLt~dg~~Li~SDGS--------~~L~~~dP~----~f~~~~~i~V~~~g~pv~~LNELE~-i~G-~IyANVW~td~I 197 (264)
T PF05096_consen 132 GWGLTSDGKRLIMSDGS--------SRLYFLDPE----TFKEVRTIQVTDNGRPVSNLNELEY-ING-KIYANVWQTDRI 197 (264)
T ss_dssp --EEEECSSCEEEE-SS--------SEEEEE-TT----T-SEEEEEE-EETTEE---EEEEEE-ETT-EEEEEETTSSEE
T ss_pred ceEEEcCCCEEEEECCc--------cceEEECCc----ccceEEEEEEEECCEECCCcEeEEE-EcC-EEEEEeCCCCeE
Confidence 33455556666665552 235556542 2444444443211 00111111 255 7777654 4469
Q ss_pred EEEeCCCCeEEEeeeecC
Q 017748 325 CWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 325 ~~yd~~t~~~~~v~~~~~ 342 (366)
+..|++|++....+++.+
T Consensus 198 ~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEEETTT-BEEEEEE-HH
T ss_pred EEEeCCCCeEEEEEEhhH
Confidence 999999999988767753
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.93 E-value=17 Score=32.75 Aligned_cols=140 Identities=6% Similarity=0.090 Sum_probs=70.7
Q ss_pred ccEEEEEEecC-CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECC-CceeeeeC-CCCccCCC
Q 017748 173 YTEVAVFSLRV-NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLK-SEEFYQVP-LPPIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t-~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~-~~~~~~i~-lP~~~~~~ 247 (366)
...+.+|+..+ +.++.+...+.. .....+.+ +|..-+++.... ..|.+|++. ++++..+. .|...
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPG--- 80 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCC---
Confidence 34567777753 677665443321 11123333 465444443322 368888886 45555442 22211
Q ss_pred CceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEE
Q 017748 248 GYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLC 325 (366)
Q Consensus 248 ~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~ 325 (366)
....++.. +|+..++...... .+.+|.+++.+.. ...+..++.... .+-.++.++|+.+++... ++.+.
T Consensus 81 -~p~~i~~~~~g~~l~v~~~~~~----~v~v~~~~~~g~~--~~~~~~~~~~~~--~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 81 -SPTHISTDHQGRFLFSASYNAN----CVSVSPLDKDGIP--VAPIQIIEGLEG--CHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred -CceEEEECCCCCEEEEEEcCCC----eEEEEEECCCCCC--CCceeeccCCCc--ccEeEeCCCCCEEEEeeCCCCEEE
Confidence 11233433 4554444443332 8999999754321 222333322111 333556777767766654 45699
Q ss_pred EEeCCC
Q 017748 326 WYDLER 331 (366)
Q Consensus 326 ~yd~~t 331 (366)
+||+++
T Consensus 152 v~d~~~ 157 (330)
T PRK11028 152 LFTLSD 157 (330)
T ss_pred EEEECC
Confidence 999976
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.24 E-value=22 Score=33.18 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred EECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEec
Q 017748 204 FVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 204 ~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
+-+|. .-+.++.. ..+++||+++.+...+..|.... ....-...+. .+...++.+..+ .|.+-...
T Consensus 266 ~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhak 333 (514)
T KOG2055|consen 266 APNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAK 333 (514)
T ss_pred cCCCceEEEecccc------eEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhh
Confidence 34565 44444443 48999999999999998888773 1111112222 233333333333 55553333
Q ss_pred cCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 282 EYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. ++|..-..|+- ...-..+..++..|+.+..++.|+.+|+++++....
T Consensus 334 T----~eli~s~KieG----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 334 T----KELITSFKIEG----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred h----hhhhheeeecc----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 2 34555444432 244556666776777777778899999999976544
No 72
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.19 E-value=12 Score=32.56 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=83.3
Q ss_pred eEEEeeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 100 GFIIGSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 100 ~~~~~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.-+++.-+|=|-... ..+.+. -.||.++.-..+|.|..-... .-.+..|+... +.+. ......+..
T Consensus 192 yGi~atpdGsvwyaslagnaia-ridp~~~~aev~p~P~~~~~g----sRriwsdpig~----~wit----twg~g~l~r 258 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIA-RIDPFAGHAEVVPQPNALKAG----SRRIWSDPIGR----AWIT----TWGTGSLHR 258 (353)
T ss_pred cceEECCCCcEEEEeccccceE-EcccccCCcceecCCCccccc----ccccccCccCc----EEEe----ccCCceeeE
Confidence 347777778775554 345566 889999988888877542221 11234444321 1111 122456888
Q ss_pred EEecCCcEEEccCCCcceecCCcceEECC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEEC
Q 017748 179 FSLRVNSWRRIQDFPYFWVTGTCSVFVNG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALG 257 (366)
Q Consensus 179 yss~t~~W~~~~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~ 257 (366)
|+..+.+|.+-.-+... ....++++|. -.-|+..-.. ..|..||+++++|+.++.|.... ....|.-..
T Consensus 259 fdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n~---gn~ql~gr~ 328 (353)
T COG4257 259 FDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPNS---GNIQLDGRP 328 (353)
T ss_pred eCcccccceeeeCCCCC--CCcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCCC---CceeccCCC
Confidence 99999999976422111 2233555553 3446654432 48999999999999998887641 133333334
Q ss_pred CeEEEE
Q 017748 258 GCLCLL 263 (366)
Q Consensus 258 g~L~l~ 263 (366)
|++.+.
T Consensus 329 ge~W~~ 334 (353)
T COG4257 329 GELWFT 334 (353)
T ss_pred Cceeec
Confidence 555553
No 73
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=88.12 E-value=7.9 Score=33.10 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=83.4
Q ss_pred CcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCC--------CCceEEEE
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGI--------EGYYILLE 254 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~--------~~~~~~l~ 254 (366)
+.|...-.+|..+. .+..|+.+|.+|+..... ..|+.||++++.- ....+|...-. ......++
T Consensus 56 ~~~~~~~~lp~~~~-gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 56 GRKAEKYRLPYSWD-GTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred cCcceEEeCCCCcc-ccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 45555445555442 344689999999988655 4899999998544 34466654411 11235778
Q ss_pred EECCeEEEEEeecCCCCCCcEEEEEeccC--CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----Ce-EEEE
Q 017748 255 ALGGCLCLLCKFDDDDDDRPWDLWVMKEY--GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GD-LCWY 327 (366)
Q Consensus 255 ~~~g~L~l~~~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~-~~~y 327 (366)
+-+..|.++....++ ...+.|-.|+.. ..+..|..-..-... --++..+| .++..... .. -++|
T Consensus 129 vDE~GLWviYat~~~--~g~iv~skLdp~tl~~e~tW~T~~~k~~~------~~aF~iCG-vLY~v~S~~~~~~~i~yay 199 (249)
T KOG3545|consen 129 VDENGLWVIYATPEN--AGTIVLSKLDPETLEVERTWNTTLPKRSA------GNAFMICG-VLYVVHSYNCTHTQISYAY 199 (249)
T ss_pred ecccceeEEeccccc--CCcEEeeccCHHHhheeeeeccccCCCCc------CceEEEee-eeEEEeccccCCceEEEEE
Confidence 888888887776542 225666777763 234556542222111 12333345 55555431 22 3799
Q ss_pred eCCCCeEEEeeeec
Q 017748 328 DLERHRVRSIVEID 341 (366)
Q Consensus 328 d~~t~~~~~v~~~~ 341 (366)
|..+++-+.+ .|+
T Consensus 200 dt~~~~~~~~-~ip 212 (249)
T KOG3545|consen 200 DTTTGTQERI-DLP 212 (249)
T ss_pred EcCCCceecc-ccc
Confidence 9999999888 653
No 74
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=87.52 E-value=1.6 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.3
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.|++...++.++++|.+|++..+-++..+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 68888778889999999999988766654
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.40 E-value=18 Score=31.09 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
+|.+||..... ..|..+|+.+++...+.+|... ...+..-+|+|+++... .+.+. +. .
T Consensus 11 ~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~~~-----G~~~~~~~g~l~v~~~~-------~~~~~--d~--~ 68 (246)
T PF08450_consen 11 DGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPGPN-----GMAFDRPDGRLYVADSG-------GIAVV--DP--D 68 (246)
T ss_dssp TTEEEEEETTT------TEEEEEETTTTEEEEEESSSEE-----EEEEECTTSEEEEEETT-------CEEEE--ET--T
T ss_pred CCEEEEEEcCC------CEEEEEECCCCeEEEEecCCCc-----eEEEEccCCEEEEEEcC-------ceEEE--ec--C
Confidence 69999997654 3899999999999888777732 22222236777776542 33333 32 2
Q ss_pred CCceEEEEEeccC--CCceeeEEEEecCCcEEEEEeeC---------CeEEEEeCCCCeEEEe
Q 017748 286 NDSWTKLATLLNV--GGGNVKPLVYSRSEDKVLLHAVR---------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 286 ~~~W~~~~~i~~~--~~~~~~~~~~~~~g~~i~~~~~~---------~~~~~yd~~t~~~~~v 337 (366)
.++++.+...... .......+++..+| .+++.... ++++.+++. ++.+.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 3568887777422 23123335566676 67776432 358899998 666655
No 76
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=87.28 E-value=24 Score=32.40 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=99.5
Q ss_pred CccEEEEEeccccce-eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-EccCCC
Q 017748 116 RRNIMLLLNPLTKRH-RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR-RIQDFP 193 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~~ 193 (366)
.+.+- |+++.|.+. .+||.++.++.........+++.+. +++-.|.- ......+.|.+..++.=- +++ .|
T Consensus 76 ~d~V~-v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n-----~~p~~~V~VvD~~~~kvv~ei~-vp 147 (352)
T TIGR02658 76 TDYVE-VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQ-----FSPSPAVGVVDLEGKAFVRMMD-VP 147 (352)
T ss_pred CCEEE-EEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEec-----CCCCCEEEEEECCCCcEEEEEe-CC
Confidence 34566 999999875 4576555433110112223344332 22333221 122456777777765432 222 12
Q ss_pred c--cee----cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeec
Q 017748 194 Y--FWV----TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFD 267 (366)
Q Consensus 194 ~--~~~----~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~ 267 (366)
- ..+ ......+.+|.+.-++...++.........||.+.. -...-|.....++ ...-+..+|.++++....
T Consensus 148 ~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~--~v~~rP~~~~~dg-~~~~vs~eG~V~~id~~~ 224 (352)
T TIGR02658 148 DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE--YLINHPAYSNKSG-RLVWPTYTGKIFQIDLSS 224 (352)
T ss_pred CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc--ccccCCceEcCCC-cEEEEecCCeEEEEecCC
Confidence 1 111 112245677877776665544322234444544321 1112331111111 223344458888887544
Q ss_pred CCCCCCcEEEEEeccCCC-CCceEEEEEeccCCCceeeEEEEecCCcEEEEEe----------eCCeEEEEeCCCCeEEE
Q 017748 268 DDDDDRPWDLWVMKEYGV-NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA----------VRGDLCWYDLERHRVRS 336 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~----------~~~~~~~yd~~t~~~~~ 336 (366)
.. ......|.+...+. ++.|.. +...+++++.+|+++|+.. .++.+.++|.+|++...
T Consensus 225 ~~--~~~~~~~~~~~~~~~~~~wrP---------~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 225 GD--AKFLPAIEAFTEAEKADGWRP---------GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred Cc--ceecceeeeccccccccccCC---------CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 31 11344555433221 122321 2366788898888888843 12469999999998765
Q ss_pred eeeec
Q 017748 337 IVEID 341 (366)
Q Consensus 337 v~~~~ 341 (366)
...+.
T Consensus 294 ~i~vG 298 (352)
T TIGR02658 294 KIELG 298 (352)
T ss_pred EEeCC
Confidence 42443
No 77
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.70 E-value=1.2 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.713 Sum_probs=15.0
Q ss_pred CCccEEEEEEecCCcEEEccCCC
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
.....+++|+..+++|+.++.+|
T Consensus 26 ~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EE---EEEEETTTTEEEE--SS-
T ss_pred cccCCEEEEECCCCEEEECCCCC
Confidence 45668899999999999997766
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.68 E-value=0.22 Score=45.50 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHccCCcccceeeeccchhhhhhcCChh
Q 017748 6 QLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQD 42 (366)
Q Consensus 6 ~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~ 42 (366)
.||.|++..||+-|..++++|++.+|+.|+-+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 5999999999999999999999999999999987754
No 79
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.67 E-value=2.7 Score=37.77 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=61.2
Q ss_pred EEEEEEecC--CcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCC----CCcEEEEEECCCceeeee--CCCCccCC
Q 017748 175 EVAVFSLRV--NSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDAD----RNDIIIAFDLKSEEFYQV--PLPPIVGI 246 (366)
Q Consensus 175 ~~~vyss~t--~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~----~~~~i~~fD~~~~~~~~i--~lP~~~~~ 246 (366)
...+.++.. ..|+.++..|-........+.++|.||..+..+.... .-..+..||+.+++|+.+ ..|...
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl-- 136 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGL-- 136 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccc--
Confidence 344555543 6899999887665555557899999999997764322 234789999999999888 566654
Q ss_pred CCceEEEEEECC-eEEEEEeecC
Q 017748 247 EGYYILLEALGG-CLCLLCKFDD 268 (366)
Q Consensus 247 ~~~~~~l~~~~g-~L~l~~~~~~ 268 (366)
....-...++ ++++....+.
T Consensus 137 --~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 137 --VGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred --ccceeEecCCceEEEEccccH
Confidence 2222334455 7888777543
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.16 E-value=27 Score=31.92 Aligned_cols=173 Identities=12% Similarity=0.152 Sum_probs=88.0
Q ss_pred cceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc--EEEccCC--CcceecCCcceE-ECCcEEEEEeeCCCC
Q 017748 145 PSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS--WRRIQDF--PYFWVTGTCSVF-VNGALHWTAALNQDA 219 (366)
Q Consensus 145 ~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~--~~~~~~~~~~v~-~~G~lYw~~~~~~~~ 219 (366)
.....+.++|.. +|-++.-. ....+.+|+...+. ....... +... .....++ -+|..-|+..+..
T Consensus 144 ~h~H~v~~~pdg-~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s-- 213 (345)
T PF10282_consen 144 PHPHQVVFSPDG-RFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELS-- 213 (345)
T ss_dssp TCEEEEEE-TTS-SEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTT--
T ss_pred ccceeEEECCCC-CEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCC--
Confidence 355667777753 34443311 14568888886654 5442211 1111 0011122 2565555544432
Q ss_pred CCCcEEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEE
Q 017748 220 DRNDIIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKL 292 (366)
Q Consensus 220 ~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~ 292 (366)
..|.+|+.. +..+..+ .+|...........|... +|+..++...... .+.++.++... +.-..+
T Consensus 214 ---~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~----sI~vf~~d~~~--g~l~~~ 284 (345)
T PF10282_consen 214 ---NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN----SISVFDLDPAT--GTLTLV 284 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT----EEEEEEECTTT--TTEEEE
T ss_pred ---CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC----EEEEEEEecCC--CceEEE
Confidence 256666666 6666554 455533111133445544 4554444443332 89999996532 345556
Q ss_pred EEeccCCCceeeEEEEecCCcEEEEEee-CCeEEE--EeCCCCeEEEe
Q 017748 293 ATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCW--YDLERHRVRSI 337 (366)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~--yd~~t~~~~~v 337 (366)
..++... ...+-+.+.++|+.+++... ++.+.+ .|.++++++.+
T Consensus 285 ~~~~~~G-~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 285 QTVPTGG-KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEESS-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEeCCC-CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 6665422 12455666778877777653 344554 47789999988
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.42 E-value=26 Score=31.13 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeE---EEEEeecCCCCCCcE
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCL---CLLCKFDDDDDDRPW 275 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L---~l~~~~~~~~~~~~l 275 (366)
-.++.++|-.-.-+..+ ..|-.||+.+..=..+ .-|.+. .-.|-- .+.+ .++.+.++- .+
T Consensus 46 itavAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Hags-----itaL~F-~~~~S~shLlS~sdDG----~i 109 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHAGS-----ITALKF-YPPLSKSHLLSGSDDG----HI 109 (362)
T ss_pred eeEEEecceeEeccCCC------CcEEEEeccchhhhcceeccccc-----eEEEEe-cCCcchhheeeecCCC----cE
Confidence 34677887644433333 4799999987644333 333322 111111 1111 444444432 89
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+|..+. |+.+.++..-.- -...+++++.| ++-+. ..|..+-.+|+-+++-..++.+.
T Consensus 110 ~iw~~~~------W~~~~slK~H~~-~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 110 IIWRVGS------WELLKSLKAHKG-QVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred EEEEcCC------eEEeeeeccccc-ccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccC
Confidence 9998765 988888854321 16667888888 55554 45556888888888877776664
No 82
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.21 E-value=13 Score=33.61 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=68.9
Q ss_pred CcceEEC--CcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCcc-CCCCce---EEEEEE---CCeEEEEEeec
Q 017748 200 TCSVFVN--GALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIV-GIEGYY---ILLEAL---GGCLCLLCKFD 267 (366)
Q Consensus 200 ~~~v~~~--G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~-~~~~~~---~~l~~~---~g~L~l~~~~~ 267 (366)
..+++.+ |.+||++..+ .|...|++.+.-... .+-... ....+. ..+..+ .|+||++....
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp S--EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred cccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 3456544 6799988876 799999998754333 111111 011121 123333 58999875432
Q ss_pred CCC--CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-e-CCeEEEEeCCCCeEEEe
Q 017748 268 DDD--DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-V-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 268 ~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~-~~~~~~yd~~t~~~~~v 337 (366)
... ..-.-+||+++-. +=.++.++++... ..-+++..+..=+++.. . ++.+++||..|++....
T Consensus 260 ~~gsHKdpgteVWv~D~~----t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLK----THKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp -TT-TTS-EEEEEEEETT----TTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCCccCCceEEEEEECC----CCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 210 1115789999973 2456777776432 33467777665455543 2 45699999999987644
No 83
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.50 E-value=12 Score=35.56 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=78.1
Q ss_pred ecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEcc-----CCCcceecCCcceEECCcEEEEEeeCC--------CC
Q 017748 153 DVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQ-----DFPYFWVTGTCSVFVNGALHWTAALNQ--------DA 219 (366)
Q Consensus 153 d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~-----~~~~~~~~~~~~v~~~G~lYw~~~~~~--------~~ 219 (366)
...++.-|++..... .+-.-...+..++++-+|.... .+|+.. .+++.+++++|..++.-. .+
T Consensus 210 eKDs~~skmvvyGGM-~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~ 285 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGM-SGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVAT 285 (830)
T ss_pred eccCCcceEEEEccc-ccccccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeecccccccc
Confidence 445556676665431 1223456788999999997653 344432 457889999997764321 01
Q ss_pred ---CC--CcEEEEEECCCceeeeeCCCCccCC----CCceEEEEEECCeEEEEEeecCC-----CCCCcEEEEEeccC
Q 017748 220 ---DR--NDIIIAFDLKSEEFYQVPLPPIVGI----EGYYILLEALGGCLCLLCKFDDD-----DDDRPWDLWVMKEY 283 (366)
Q Consensus 220 ---~~--~~~i~~fD~~~~~~~~i~lP~~~~~----~~~~~~l~~~~g~L~l~~~~~~~-----~~~~~l~iW~l~~~ 283 (366)
.+ +..+-++|+.+..|..+.+-...++ .+..-+-+..+.+||+-.+.++. +..+--++|-||..
T Consensus 286 hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 286 HEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 11 2378899999999988754332211 11223456678999998887652 34445577887754
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.12 E-value=31 Score=30.11 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=66.4
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
-+|.+|=-++... .-.|..+|+++++.. ..++|... +.--++..+++|+.++=.+. ..-++-.+
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d~l~qLTWk~~-----~~f~yd~~-- 118 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGDKLYQLTWKEG-----TGFVYDPN-- 118 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSSS-----EEEEEETT--
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc----cceeEEEECCEEEEEEecCC-----eEEEEccc--
Confidence 3567765544332 248999999998874 56999876 55567888999999887665 33333222
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
...++.+++...- --|.+.+|+.+++.....++...|+++-+..+-..+
T Consensus 119 ----tl~~~~~~~y~~E----GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 119 ----TLKKIGTFPYPGE----GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp ----TTEEEEEEE-SSS------EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred ----cceEEEEEecCCc----ceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 3555655554321 123335665777776667899999998765433244
No 85
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.11 E-value=4.7 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.6
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+++...++.++++|.++++..+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 788888788899999999987764
No 86
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=81.82 E-value=40 Score=30.47 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEec
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
+|.+-+...-+. ..|..||++.++.... .++++. ....|+-- +|+++++..+-.. .+.+|..+
T Consensus 155 ~~~~l~v~DLG~-----Dri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~ 221 (346)
T COG2706 155 DGRYLVVPDLGT-----DRIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVNELNS----TVDVLEYN 221 (346)
T ss_pred CCCEEEEeecCC-----ceEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEeccCC----EEEEEEEc
Confidence 355555555543 4677777775555432 444443 12233332 5777766555444 89999998
Q ss_pred cCCCCCceEEEEEeccCCC---c--eeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEeeee
Q 017748 282 EYGVNDSWTKLATLLNVGG---G--NVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v~~~ 340 (366)
.. .++-.++.++...+- + ...-+.+..+|..++....+. -++..|+.+++++-+ +.
T Consensus 222 ~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~ 285 (346)
T COG2706 222 PA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GI 285 (346)
T ss_pred CC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EE
Confidence 85 355777776654322 1 244455667884444443322 288889999998877 54
No 87
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=81.33 E-value=2.1 Score=26.39 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=20.8
Q ss_pred CCccEEEEEEecCCcEEEccCCCcce
Q 017748 171 MNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 171 ~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
.....+++|+..+++|+.++.+|...
T Consensus 16 ~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CEecCEEEEECCCCEEEECCCCCCCc
Confidence 34567899999999999997776543
No 88
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.16 E-value=50 Score=31.19 Aligned_cols=98 Identities=9% Similarity=0.136 Sum_probs=59.5
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+++-..+ ..+... ..... .-+| +|.+...... .-+||.++-.+ +.+.++..-+..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~----~~~~~-SPDG~~la~~~~~~g-----~~~Iy~~dl~~--g~~~~LT~~~~~--- 278 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML----VVSDV-SKDGSKLLLTMAPKG-----QPDIYLYDTNT--KTLTQITNYPGI--- 278 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE----EeeEE-CCCCCEEEEEEccCC-----CcEEEEEECCC--CcEEEcccCCCc---
Confidence 799999998877666 333221 11222 2245 5655544332 57899888533 345554332211
Q ss_pred eeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v 337 (366)
.....+.++|+.|++..+.. .++.+|+.+++.+++
T Consensus 279 -d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 279 -DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred -cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 22234667888899987532 599999999999888
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.01 E-value=45 Score=30.00 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEE
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~ 276 (366)
=+|...|...... ..|.+||+. ++++..+ .+|...........+... +|+ ||+. ..... .+.
T Consensus 184 pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~----~I~ 253 (330)
T PRK11028 184 PNQQYAYCVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTAS----LIS 253 (330)
T ss_pred CCCCEEEEEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCC----eEE
Confidence 3456555554432 368888876 3444333 244432111111122222 454 5554 32222 899
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEE--eCCCCeEEEe
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWY--DLERHRVRSI 337 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~y--d~~t~~~~~v 337 (366)
+|.++..+ ..+..+..++.... .+-+.+.++|..|+.... ++.+..| |.+++.++.+
T Consensus 254 v~~i~~~~--~~~~~~~~~~~~~~--p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 254 VFSVSEDG--SVLSFEGHQPTETQ--PRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEeCCC--CeEEEeEEEecccc--CCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 99987643 34666666654322 344567788867776654 4456666 5567888777
No 90
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=78.60 E-value=83 Score=32.25 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=45.0
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
+|.+..+...++ .+.||.+++..-...|..+..- ....-..+.-.+++++|+.+.+...++.|.+|+.++...
T Consensus 149 ~~~fLAvss~dG-----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 149 KGNFLAVSSCDG-----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred CCCEEEEEecCc-----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 455555555555 8999999975333445554222 111112355667778877888887777799998765443
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=78.49 E-value=60 Score=30.58 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=24.8
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
..-+.+.++|+.|+-...++++++||-+|-++-
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 334567788867776777788999999988754
No 92
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.82 E-value=5.4 Score=23.21 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=18.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKS 232 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~ 232 (366)
..+++.+|.+|..+..+ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 44678899999887755 899999875
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=75.88 E-value=69 Score=29.89 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=71.5
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
=||.++-.+..+ ..+-.||+++.. ..-.+|... .-...+.-.++.-+++...++. .+.+|-|....
T Consensus 357 pDgLifgtgt~d------~~vkiwdlks~~-~~a~Fpght---~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~ 422 (506)
T KOG0289|consen 357 PDGLIFGTGTPD------GVVKIWDLKSQT-NVAKFPGHT---GPVKAISFSENGYWLATAADDG----SVKLWDLRKLK 422 (506)
T ss_pred CCceEEeccCCC------ceEEEEEcCCcc-ccccCCCCC---CceeEEEeccCceEEEEEecCC----eEEEEEehhhc
Confidence 345555544433 378899999887 555777643 1234455567777787777664 69999987642
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
...++......-..-+.+...|..+.+...+-+++.|+-.++.|.++-++
T Consensus 423 ------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 423 ------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred ------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 12344433221133455556664455554455689999999999998444
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.84 E-value=1.2e+02 Score=31.33 Aligned_cols=191 Identities=9% Similarity=0.041 Sum_probs=93.9
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc-EE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS-WR 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~-W~ 187 (366)
++.....+..+. |||..+++.... ...+ ......+.+++..+.+-+.+ . ....+.+|+..++. ..
T Consensus 547 ~las~~~Dg~v~-lWd~~~~~~~~~--~~~H----~~~V~~l~~~p~~~~~L~Sg-s------~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 547 QVASSNFEGVVQ-VWDVARSQLVTE--MKEH----EKRVWSIDYSSADPTLLASG-S------DDGSVKLWSINQGVSIG 612 (793)
T ss_pred EEEEEeCCCeEE-EEECCCCeEEEE--ecCC----CCCEEEEEEcCCCCCEEEEE-c------CCCEEEEEECCCCcEEE
Confidence 333333455677 888777654321 1111 12344566665444332222 1 14467888876542 22
Q ss_pred EccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEE
Q 017748 188 RIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLC 264 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~ 264 (366)
.+.... . ...+.. +|.....+..+ ..|..+|+.+..-....+... ......+...++...+..
T Consensus 613 ~~~~~~-~----v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h---~~~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 613 TIKTKA-N----ICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH---SKTVSYVRFVDSSTLVSS 678 (793)
T ss_pred EEecCC-C----eEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC---CCCEEEEEEeCCCEEEEE
Confidence 221100 0 001111 35544444433 379999998653111111111 111223333466655555
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
..+. .+.||-+........|..+..+.-.. .....+++..+++.|.....++.+..|+..+..
T Consensus 679 s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 679 STDN-----TLKLWDLSMSISGINETPLHSFMGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ECCC-----EEEEEeCCCCccccCCcceEEEcCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 5444 89999987532223465555553211 113446666667555556667789999987654
No 95
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=70.30 E-value=95 Score=29.97 Aligned_cols=131 Identities=8% Similarity=-0.052 Sum_probs=63.0
Q ss_pred eEEC-CcEEEEEeeCCCCCCCcEEEEEECCCc--eeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCC-CCCCcEEEE
Q 017748 203 VFVN-GALHWTAALNQDADRNDIIIAFDLKSE--EFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDD-DDDRPWDLW 278 (366)
Q Consensus 203 v~~~-G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~-~~~~~l~iW 278 (366)
++.+ |.+|.-...+ .++++|.++. .|+.-.-+............+..++.+++....... .....=.++
T Consensus 106 ~~~~~~~V~v~~~~g-------~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 106 AYWDPRKVFFGTFDG-------RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALR 178 (488)
T ss_pred EEccCCeEEEecCCC-------eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEE
Confidence 3445 8888765443 7999999865 444332222100000011123334555543221100 000012456
Q ss_pred EeccCCCCCceEEEEEeccC-CC---------------ceeeEEEEecCCcEEEEEeeCC------------------eE
Q 017748 279 VMKEYGVNDSWTKLATLLNV-GG---------------GNVKPLVYSRSEDKVLLHAVRG------------------DL 324 (366)
Q Consensus 279 ~l~~~~~~~~W~~~~~i~~~-~~---------------~~~~~~~~~~~g~~i~~~~~~~------------------~~ 324 (366)
.++....+..|.....-+.. .. ....+..+...++.|++...+. .+
T Consensus 179 alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l 258 (488)
T cd00216 179 AYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSI 258 (488)
T ss_pred EEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeE
Confidence 66654344567653321100 00 0012234443445788876442 69
Q ss_pred EEEeCCCCeEEEeeee
Q 017748 325 CWYDLERHRVRSIVEI 340 (366)
Q Consensus 325 ~~yd~~t~~~~~v~~~ 340 (366)
+++|.+|++..+.++.
T Consensus 259 ~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 259 VALDADTGKVKWFYQT 274 (488)
T ss_pred EEEcCCCCCEEEEeeC
Confidence 9999999998887554
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=69.56 E-value=97 Score=28.83 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=49.1
Q ss_pred EEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCceeeEEEEecCCcE-EEEEeeCCeEEEEeCCC
Q 017748 254 EALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGGNVKPLVYSRSEDK-VLLHAVRGDLCWYDLER 331 (366)
Q Consensus 254 ~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~-i~~~~~~~~~~~yd~~t 331 (366)
..-+|++.++..... .+.+|-+++ |..+..- +...-.+.---||.+.++. |.-.+.|.+++.++.++
T Consensus 403 iS~d~k~~LvnL~~q-----ei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQ-----EIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EcCCCcEEEEEcccC-----eeEEeecch------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 334789999988776 899999986 3222111 1111111222334332223 33345678899999999
Q ss_pred CeEEEeeeecCcccCeeeeeEEec
Q 017748 332 HRVRSIVEIDDKVRRCDMRTVCVN 355 (366)
Q Consensus 332 ~~~~~v~~~~~~~~~~~~~~~y~~ 355 (366)
++.-.+ +.| .....+++.+.|
T Consensus 472 gkll~~--LsG-Hs~~vNcVswNP 492 (519)
T KOG0293|consen 472 GKLLAV--LSG-HSKTVNCVSWNP 492 (519)
T ss_pred CceeEe--ecC-CcceeeEEecCC
Confidence 997655 344 223344444443
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.76 E-value=83 Score=26.98 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=100.5
Q ss_pred ceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN- 184 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~- 184 (366)
+|-.|+.. .+..+- +|||..+...+-=. .+.. ...-+++.+|.. |+. .......+.+++.+|+
T Consensus 28 dGnY~ltcGsdrtvr-LWNp~rg~liktYs---ghG~-EVlD~~~s~Dns----kf~------s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVR-LWNPLRGALIKTYS---GHGH-EVLDAALSSDNS----KFA------SCGGDKAVQVWDVNTGK 92 (307)
T ss_pred CCCEEEEcCCCceEE-eecccccceeeeec---CCCc-eeeecccccccc----ccc------cCCCCceEEEEEcccCe
Confidence 55555555 345566 99999887654110 0000 111122222221 211 1123557888888876
Q ss_pred ---cEEEccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeE
Q 017748 185 ---SWRRIQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCL 260 (366)
Q Consensus 185 ---~W~~~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L 260 (366)
.|+....--.... +..++|.+.|.+= ..+-++|..++.+.+|+.=.... ....-..+.+..
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD------------~s~r~wDCRS~s~ePiQildea~---D~V~Si~v~~he 157 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFD------------SSVRLWDCRSRSFEPIQILDEAK---DGVSSIDVAEHE 157 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEecccc------------ceeEEEEcccCCCCccchhhhhc---CceeEEEecccE
Confidence 4665432222222 3444555555431 37999999999999886654431 123345556777
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+++..++ .++.+-+... ++....++ -..-+.+.++++..+...-+..+-..|-+|+++-+.
T Consensus 158 IvaGS~DG-----tvRtydiR~G----------~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 158 IVAGSVDG-----TVRTYDIRKG----------TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred EEeeccCC-----cEEEEEeecc----------eeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 77777665 5666555431 11111110 023355667776666666666688888888887544
No 98
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=65.99 E-value=74 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=23.5
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeee
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQ 237 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~ 237 (366)
..+++.+|.+|.....+ .+.++|.++. .|+.
T Consensus 55 ~sPvv~~g~vy~~~~~g-------~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS-------ALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCCC-------cEEEEECCCChhhcee
Confidence 45788999999876554 7999999864 4554
No 99
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=65.48 E-value=58 Score=30.39 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred eceeEEeec----C-CccEEEEEeccccceeecCCcCCCCCCC---CcceEEEeeecCCCCeEEEEEEEEcCCCCccEEE
Q 017748 106 CNGLLALED----S-RRNIMLLLNPLTKRHRVLPTFYRDLSRC---VPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVA 177 (366)
Q Consensus 106 ~~Gll~~~~----~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~---~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~ 177 (366)
-+.|+++.- . .-+++ |+|..|++..+|.......... .-....-||.-.++++|++-..
T Consensus 237 vG~LILLrI~PY~E~~~Ryl-VfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~------------ 303 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYL-VFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTD------------ 303 (448)
T ss_pred cCcEEEEEeccCCCcceeEE-EEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeeccc------------
Confidence 356667664 2 23688 9999999999987554221100 0011122444445555554421
Q ss_pred EEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEEC
Q 017748 178 VFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALG 257 (366)
Q Consensus 178 vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~ 257 (366)
.. ++.+... -.+---..++|..-....+. ..++.||+-+.+. .-|..+ +..-.--+
T Consensus 304 -----~~------~l~F~r~--vrSPNGEDvLYvF~~~~~g~---~~Ll~YN~I~k~v---~tPi~c-----hG~alf~D 359 (448)
T PF12458_consen 304 -----MD------GLEFERK--VRSPNGEDVLYVFYAREEGR---YLLLPYNLIRKEV---ATPIIC-----HGYALFED 359 (448)
T ss_pred -----CC------CceEEEE--ecCCCCceEEEEEEECCCCc---EEEEechhhhhhh---cCCeec-----cceeEecC
Confidence 11 1111110 00111334677665544332 5889999876543 334433 22223447
Q ss_pred CeEEEEEee-cCCCCCCcEEEEEec
Q 017748 258 GCLCLLCKF-DDDDDDRPWDLWVMK 281 (366)
Q Consensus 258 g~L~l~~~~-~~~~~~~~l~iW~l~ 281 (366)
|+|+++... +++.-...++||+-.
T Consensus 360 G~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 360 GRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred CEEEEEecCCCCcceeccceeecCC
Confidence 999998876 333344568899754
No 100
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=64.99 E-value=1.3e+02 Score=28.62 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=79.5
Q ss_pred ccEEEEEEecCCcEEEcc-CCCccee-----------cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC
Q 017748 173 YTEVAVFSLRVNSWRRIQ-DFPYFWV-----------TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL 240 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~-~~~~~~~-----------~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l 240 (366)
...+.+|+.++.+=+.++ ++|.... ....=..++|..+-+...+ ....++.-..-- +++
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~--iqv 356 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYS--IQV 356 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCee--EEc
Confidence 456788999888877765 3333211 1112345788888888776 455555543322 333
Q ss_pred CCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee
Q 017748 241 PPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV 320 (366)
Q Consensus 241 P~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~ 320 (366)
+.... . ....+......+.+.+...+ .+.|.-.+.. ++.++... ++...-+++..+|+.+++..+
T Consensus 357 ~~~~~-V-rY~r~~~~~e~~vigt~dgD-----~l~iyd~~~~-------e~kr~e~~-lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 357 GKKGG-V-RYRRIQVDPEGDVIGTNDGD-----KLGIYDKDGG-------EVKRIEKD-LGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CCCCc-e-EEEEEccCCcceEEeccCCc-----eEEEEecCCc-------eEEEeeCC-ccceEEEEEcCCCcEEEEEcC
Confidence 33321 0 23444444444444333322 6776544431 12233221 122445667778866777777
Q ss_pred CCeEEEEeCCCCeEEEe
Q 017748 321 RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 321 ~~~~~~yd~~t~~~~~v 337 (366)
...+.++|+++++.+.+
T Consensus 422 r~el~vididngnv~~i 438 (668)
T COG4946 422 RFELWVIDIDNGNVRLI 438 (668)
T ss_pred ceEEEEEEecCCCeeEe
Confidence 77899999999998877
No 101
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=64.76 E-value=93 Score=30.11 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=26.5
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..-+.+.++|-++++...+..|+.+|+..++--.-
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 45566778887888888888899999987774433
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=64.73 E-value=80 Score=30.13 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=36.0
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEecc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
.+-..|+.+.+-+.- +|+.... .+...-+.-+.+||+.++.++ .+.||-|.+
T Consensus 488 tlsiWDLAapTprikaeltssap--aCyALa~spDakvcFsccsdG-----nI~vwDLhn 540 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAP--ACYALAISPDAKVCFSCCSDG-----NIAVWDLHN 540 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcch--hhhhhhcCCccceeeeeccCC-----cEEEEEccc
Confidence 688889988877655 6766431 122222334779999999887 899998876
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=63.37 E-value=99 Score=26.71 Aligned_cols=180 Identities=10% Similarity=0.120 Sum_probs=82.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
....+. ++|+.|++....-.... . ...+.+++.. .+-++... ....+.+|+..++.... +....
T Consensus 9 ~d~~v~-~~d~~t~~~~~~~~~~~-----~--~~~l~~~~dg-~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 9 KDNTIS-VIDTATLEVTRTFPVGQ-----R--PRGITLSKDG-KLLYVCAS------DSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred CCCEEE-EEECCCCceEEEEECCC-----C--CCceEECCCC-CEEEEEEC------CCCeEEEEECCCCcEEEeccCCC
Confidence 345677 88888876433211110 1 1134455432 22222211 13457788888766543 21111
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEE-ECCeEEEEEeecCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEA-LGGCLCLLCKFDDDDD 271 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~ 271 (366)
. ...-.+.-+|...+++.... ..+..+|+++.+- ..++.+... . .+.. -+|++.++......
T Consensus 74 -~--~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~----~--~~~~~~dg~~l~~~~~~~~-- 137 (300)
T TIGR03866 74 -D--PELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPVGVEP----E--GMAVSPDGKIVVNTSETTN-- 137 (300)
T ss_pred -C--ccEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeCCCCc----c--eEEECCCCCEEEEEecCCC--
Confidence 0 00101112455444443221 2689999987543 223322211 1 1222 25666665543321
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEE
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVR 335 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~ 335 (366)
.+.+|-.+. ......+..... ..-+.+..+|..+++.. .++.+..||+++++..
T Consensus 138 --~~~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 138 --MAHFIDTKT------YEIVDNVLVDQR--PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred --eEEEEeCCC------CeEEEEEEcCCC--ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 333443322 222222322211 23355667775666654 3567999999988753
No 104
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.75 E-value=98 Score=29.72 Aligned_cols=166 Identities=13% Similarity=0.100 Sum_probs=79.9
Q ss_pred CccEEEEEEecCCcEEEcc---CCCcceecCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCceee--ee--CCCCc
Q 017748 172 NYTEVAVFSLRVNSWRRIQ---DFPYFWVTGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY--QV--PLPPI 243 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~---~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~--~i--~lP~~ 243 (366)
-..+.++|.-.+++|..-+ +.|.... ..+ |+.+..+|..++.-+.+. +.=--|.+..-+|. .+ ..|..
T Consensus 55 iiDELHvYNTatnqWf~PavrGDiPpgcA--A~GfvcdGtrilvFGGMvEYGk--YsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 55 IIDELHVYNTATNQWFAPAVRGDIPPGCA--AFGFVCDGTRILVFGGMVEYGK--YSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred chhhhhhhccccceeecchhcCCCCCchh--hcceEecCceEEEEccEeeecc--ccchHHHhhhhhhhHhhcCCCCCCC
Confidence 3568899999999997543 3443332 223 334446666665432211 11222344444554 33 11211
Q ss_pred c--CCCCceEEEEEECCeEEEEEeecCC------CCCC---cEEEEEeccCCCCCceEEEEEeccCCCce---eeEEEEe
Q 017748 244 V--GIEGYYILLEALGGCLCLLCKFDDD------DDDR---PWDLWVMKEYGVNDSWTKLATLLNVGGGN---VKPLVYS 309 (366)
Q Consensus 244 ~--~~~~~~~~l~~~~g~L~l~~~~~~~------~~~~---~l~iW~l~~~~~~~~W~~~~~i~~~~~~~---~~~~~~~ 309 (366)
. .+.+..-.....+++-|++++-.+. +.++ .+-+-+|....+.-.|+.-.+-......- .-++..-
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e 210 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE 210 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence 1 1111122344556788887664321 2222 23333444322234587754333221100 1122222
Q ss_pred cCC--cEEEEEee--C---CeEEEEeCCCCeEEEeeeecC
Q 017748 310 RSE--DKVLLHAV--R---GDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 310 ~~g--~~i~~~~~--~---~~~~~yd~~t~~~~~v~~~~~ 342 (366)
+|. .++++... + +.+...|++|-.|.+. +++|
T Consensus 211 KDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp-~~~G 249 (830)
T KOG4152|consen 211 KDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKP-SLSG 249 (830)
T ss_pred ccCCcceEEEEcccccccccceeEEecceeecccc-cccC
Confidence 222 23443322 2 2399999999999999 8876
No 105
>PF13013 F-box-like_2: F-box-like domain
Probab=61.74 E-value=3.3 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccch
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSR 32 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK 32 (366)
+..||+||++.|+..-..+.+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999998888766555555
No 106
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=60.94 E-value=34 Score=29.32 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=42.4
Q ss_pred cEEEEEeccCC----CCCceEEEEEeccCCCceeeEEEEe--cCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 274 PWDLWVMKEYG----VNDSWTKLATLLNVGGGNVKPLVYS--RSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 274 ~l~iW~l~~~~----~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
.+.=|...+.. -+..|+.+..+.....+...+.+++ +..+.|++...|+.++..|+++++.+++|.-
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence 56667665432 2345877654433222223344444 3445888888888899999999999988443
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=60.67 E-value=1.6e+02 Score=28.11 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=26.8
Q ss_pred EecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 308 YSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 308 ~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
..-+|.+|+++..+. ++.|||+|.+++++ +|.
T Consensus 274 ~nsDGkrIvFq~~Gd-IylydP~td~lekl-dI~ 305 (668)
T COG4946 274 ANSDGKRIVFQNAGD-IYLYDPETDSLEKL-DIG 305 (668)
T ss_pred cCCCCcEEEEecCCc-EEEeCCCcCcceee-ecC
Confidence 335777888888665 99999999999999 886
No 108
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=60.15 E-value=1.3e+02 Score=27.07 Aligned_cols=90 Identities=16% Similarity=0.278 Sum_probs=47.0
Q ss_pred cCCcceEE-CCcEEEEEeeCCCCCC-CcEEEEEECC-Cceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCC
Q 017748 198 TGTCSVFV-NGALHWTAALNQDADR-NDIIIAFDLK-SEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDD 272 (366)
Q Consensus 198 ~~~~~v~~-~G~lYw~~~~~~~~~~-~~~i~~fD~~-~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~ 272 (366)
...++|.. ||.|-+-......... ...++.|-.. ...|..- -+|+. .+..+.+++. +|+|.|+..++.-
T Consensus 122 gGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~---gC~~psv~EWe~gkLlM~~~c~~g--- 195 (310)
T PF13859_consen 122 GGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPA---GCSDPSVVEWEDGKLLMMTACDDG--- 195 (310)
T ss_dssp -SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----T---T-EEEEEEEE-TTEEEEEEE-TTS---
T ss_pred CCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCC---CcceEEEEeccCCeeEEEEecccc---
Confidence 34446665 8888876654322222 3577888776 5677765 33322 2268899999 7999999888762
Q ss_pred CcEEEEEeccCCCCCceEEE-EEec
Q 017748 273 RPWDLWVMKEYGVNDSWTKL-ATLL 296 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~-~~i~ 296 (366)
+-.|++=.+ ...+|.+. .+++
T Consensus 196 -~rrVYeS~D--mG~tWtea~gtls 217 (310)
T PF13859_consen 196 -RRRVYESGD--MGTTWTEALGTLS 217 (310)
T ss_dssp ----EEEESS--TTSS-EE-TTTTT
T ss_pred -eEEEEEEcc--cceehhhccCccc
Confidence 345555544 44679983 3443
No 109
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=58.67 E-value=40 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=29.1
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEE
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILA 166 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~ 166 (366)
..+ +.||.||.|. |..+... ..+...+.+++..+.|+|+....
T Consensus 10 ~Vm-~~d~~tk~W~--P~~~~~~---~ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 10 SVM-VYDDSNKKWV--PAGGGSQ---GFSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred Eee-EEcCCCCcEE--cCCCCCC---CcceEEEEEcCCCCEEEEEEeec
Confidence 356 8999999854 4433111 23456677888888999998653
No 110
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=58.58 E-value=1.5e+02 Score=27.25 Aligned_cols=199 Identities=13% Similarity=0.035 Sum_probs=104.6
Q ss_pred eece-eEEeec-C-CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 105 SCNG-LLALED-S-RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 105 s~~G-ll~~~~-~-~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
+.+| ++.+.+ + ...+. |.|..+++... +|-+.+. ..|-.....|.+.+. ......+.
T Consensus 113 s~dgk~l~V~n~~p~~~V~-VvD~~~~kvv~ei~vp~~~----------~vy~t~e~~~~~~~~--------Dg~~~~v~ 173 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVG-VVDLEGKAFVRMMDVPDCY----------HIFPTANDTFFMHCR--------DGSLAKVG 173 (352)
T ss_pred CCCCCEEEEecCCCCCEEE-EEECCCCcEEEEEeCCCCc----------EEEEecCCccEEEee--------cCceEEEE
Confidence 3455 555555 4 45566 99999988755 6654321 222222344554443 11223333
Q ss_pred ecC-CcEEEccCCCc--c--eecCCcc--eEECCcEEEEEeeCCCCCCCcEEEEEECCCc------eeeeeCCC---Ccc
Q 017748 181 LRV-NSWRRIQDFPY--F--WVTGTCS--VFVNGALHWTAALNQDADRNDIIIAFDLKSE------EFYQVPLP---PIV 244 (366)
Q Consensus 181 s~t-~~W~~~~~~~~--~--~~~~~~~--v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~------~~~~i~lP---~~~ 244 (366)
+++ +. ......+. . ......+ .-.+|..+|++.++ .|..+|++.. .|..+..- ..-
T Consensus 174 ~d~~g~-~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 174 YGTKGN-PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred ecCCCc-eEEeeeeeecCCccccccCCceEcCCCcEEEEecCC-------eEEEEecCCCcceecceeeecccccccccc
Confidence 322 22 21222221 1 1112223 33479999999885 7999996543 34433111 111
Q ss_pred CCCCceEEEEEE--CCeEEEEEeecC--CCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe
Q 017748 245 GIEGYYILLEAL--GGCLCLLCKFDD--DDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA 319 (366)
Q Consensus 245 ~~~~~~~~l~~~--~g~L~l~~~~~~--~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~ 319 (366)
+-.+.+. ++.- +++||++..... +-....=.||+++- .++..+.+++.... ..-+++..+|+ .++...
T Consensus 246 rP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG~~--~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 246 RPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELGHE--IDSINVSQDAKPLLYALS 318 (352)
T ss_pred CCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCCCc--eeeEEECCCCCeEEEEeC
Confidence 1122233 3332 467777543111 00000247899986 56889999987654 66778889986 444443
Q ss_pred -eCCeEEEEeCCCCeEEEe
Q 017748 320 -VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 320 -~~~~~~~yd~~t~~~~~v 337 (366)
.++.+.++|..+++..+-
T Consensus 319 ~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 319 TGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCCcEEEEECcCCeEEee
Confidence 234599999999865433
No 111
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=58.46 E-value=18 Score=34.36 Aligned_cols=141 Identities=9% Similarity=-0.020 Sum_probs=75.6
Q ss_pred eccccceeecCCcCCCCCC-----CCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccC---CCcc
Q 017748 124 NPLTKRHRVLPTFYRDLSR-----CVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQD---FPYF 195 (366)
Q Consensus 124 NP~t~~~~~LP~~~~~~~~-----~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~---~~~~ 195 (366)
-|.+-.|-++|+....... +......+.+++.+..-.+...- +..+....+++|+-+.+.|..+.. .|-.
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW--dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~ 312 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW--DGTQDLADFWAYSVKENQWTCINRDTEGPGA 312 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc--ccchhHHHHHhhcCCcceeEEeecCCCCCcc
Confidence 4778888888876531110 02344455666554432222211 111445678999999999998742 2211
Q ss_pred eecCCcceEEC--CcEEEEEeeCC-----CCCCCcEEEEEECCCceeeeeCCCCccC---CCCceEEEEEECCe--EEEE
Q 017748 196 WVTGTCSVFVN--GALHWTAALNQ-----DADRNDIIIAFDLKSEEFYQVPLPPIVG---IEGYYILLEALGGC--LCLL 263 (366)
Q Consensus 196 ~~~~~~~v~~~--G~lYw~~~~~~-----~~~~~~~i~~fD~~~~~~~~i~lP~~~~---~~~~~~~l~~~~g~--L~l~ 263 (366)
. .+...|.-- -++|-++..-. .-+...-+-.||..+..|..+..-.... ..-+.-.+++.+.+ ||+.
T Consensus 313 R-sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 313 R-SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred h-hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 1 223334332 37887764321 1123447899999999999885543320 00012234444444 7777
Q ss_pred Eeec
Q 017748 264 CKFD 267 (366)
Q Consensus 264 ~~~~ 267 (366)
++..
T Consensus 392 GGr~ 395 (723)
T KOG2437|consen 392 GGRI 395 (723)
T ss_pred cCee
Confidence 7654
No 112
>PF13854 Kelch_5: Kelch motif
Probab=58.45 E-value=27 Score=20.50 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEEECCeEEEEEeecCCCCCCcEEEEEec
Q 017748 250 YILLEALGGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 250 ~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
.-..+..+++|++.++....+....=++|+++
T Consensus 7 ~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred ceEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 34456678999999887731111123667765
No 113
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.34 E-value=1.4e+02 Score=26.78 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=114.3
Q ss_pred eeEEeecCCccEEEEEecccccee-ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHR-VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
..+.+..++..+.+|+|+.+++.. .+++++.. ..++-|.-...++ .+...+.+.+...-.+-||+.. +..
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR------HFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~-~~~ 88 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR------HFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA-RGY 88 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC------EEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc-CCc
Confidence 344555567666669999999975 45444322 1222222111122 2222222333556788899998 444
Q ss_pred EEccCCCc------cee---cCCcceEECCcEEEEEeeCCC-C---CCCcEEEEEECCCcee-eeeCCCCccCCCCceEE
Q 017748 187 RRIQDFPY------FWV---TGTCSVFVNGALHWTAALNQD-A---DRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYIL 252 (366)
Q Consensus 187 ~~~~~~~~------~~~---~~~~~v~~~G~lYw~~~~~~~-~---~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~ 252 (366)
+.+.+.+. ... ....=|+.||-+.=....+.. . .-.-+++-+|..+.+. ....||... +......
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cccceee
Confidence 44443321 111 111235566655443222110 0 0122688888888775 555888765 2223556
Q ss_pred EEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC---C-ceeeEEEEecCCcEEEEEee-CCeEEE
Q 017748 253 LEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG---G-GNVKPLVYSRSEDKVLLHAV-RGDLCW 326 (366)
Q Consensus 253 l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---~-~~~~~~~~~~~g~~i~~~~~-~~~~~~ 326 (366)
|+.- +|.+++............--+...+..+ . .+...++... + ++..-+++..+|+.|.+.+. ++.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 7775 4677777666553222222233333211 1 1122222211 1 44777888888866666654 446999
Q ss_pred EeCCCCeEEEeeee
Q 017748 327 YDLERHRVRSIVEI 340 (366)
Q Consensus 327 yd~~t~~~~~v~~~ 340 (366)
||..++++.....+
T Consensus 244 ~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 244 WDAATGRLLGSVPL 257 (305)
T ss_pred EECCCCCEeecccc
Confidence 99999999876344
No 114
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=56.73 E-value=31 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEecCCcEEEEEee------------------CCeEEEEeCCCCeEEEe
Q 017748 306 LVYSRSEDKVLLHAV------------------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 306 ~~~~~~g~~i~~~~~------------------~~~~~~yd~~t~~~~~v 337 (366)
+.+..++|.|+|... .++++.||++|++.+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 345556447887732 24699999999998877
No 115
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=56.67 E-value=1.6e+02 Score=26.83 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=80.6
Q ss_pred ccEEEEEEecCCcEEEccCCCccee-cCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee----CCCCccCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV----PLPPIVGI 246 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~ 246 (366)
...+.+|+..++.-........... ....-++ =||++-++..+= +....+..||....++..+ -+|.....
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---NSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---CCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 4568889988776655432211111 1222333 245554444332 1224566666666788766 46766532
Q ss_pred CCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---
Q 017748 247 EGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG--- 322 (366)
Q Consensus 247 ~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~--- 322 (366)
......|-.. +|+-.++..+... .|.+..+++.+ +.=..+...+... .+.+..-+...|+.++....+.
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~d----sI~~f~V~~~~--g~L~~~~~~~teg-~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHD----SIAVFSVDPDG--GKLELVGITPTEG-QFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCC----eEEEEEEcCCC--CEEEEEEEeccCC-cCCccceeCCCCCEEEEEccCCCcE
Confidence 2233333333 4554444443332 67777777754 3233333333322 1244455566664555554333
Q ss_pred eEEEEeCCCCeEEEe
Q 017748 323 DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ~~~~yd~~t~~~~~v 337 (366)
.++.-|.+|+++..+
T Consensus 316 ~vf~~d~~TG~L~~~ 330 (346)
T COG2706 316 TVFERDKETGRLTLL 330 (346)
T ss_pred EEEEEcCCCceEEec
Confidence 388889999999887
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=56.03 E-value=1.3e+02 Score=25.87 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=61.1
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCC--CCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEec
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPL--PPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMK 281 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~l--P~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~ 281 (366)
+|...+++.... ..+..+|+++.+. ..+.. |...........+... +|+..++...... .+.+|-++
T Consensus 167 dg~~l~~~~~~~-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~----~i~v~d~~ 237 (300)
T TIGR03866 167 DGKELWVSSEIG-----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN----RVAVVDAK 237 (300)
T ss_pred CCCEEEEEcCCC-----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC----eEEEEECC
Confidence 565554443321 3689999988654 33322 1111000011122222 4554333332222 78888654
Q ss_pred cCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeE-EEeeeec
Q 017748 282 EYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRV-RSIVEID 341 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~-~~v~~~~ 341 (366)
. |..+..+..... ...+.+.++|+.|+... .++.+.+||+++++. +.+ .+.
T Consensus 238 ~------~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 290 (300)
T TIGR03866 238 T------YEVLDYLLVGQR--VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI-KVG 290 (300)
T ss_pred C------CcEEEEEEeCCC--cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-Ecc
Confidence 3 444444432222 44566778886666543 466799999999985 555 654
No 117
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.85 E-value=1.3e+02 Score=29.36 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+--+|..+... .|..||++.+.|-. +..-... -..+.+..++|-| .++..++ .++.|-...-
T Consensus 145 scDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~---lN~v~in~~hgLl-a~Gt~~g-----~VEfwDpR~k- 207 (703)
T KOG2321|consen 145 SCDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGE---LNVVSINEEHGLL-ACGTEDG-----VVEFWDPRDK- 207 (703)
T ss_pred CccEEEeecCc-------ceEEEEcccccccccccccccc---ceeeeecCccceE-EecccCc-----eEEEecchhh-
Confidence 34677666554 69999999999843 3333221 1233444444533 3344343 7888865431
Q ss_pred CCCceEEEEEecc------CCC--ceeeE--EEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 285 VNDSWTKLATLLN------VGG--GNVKP--LVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 285 ~~~~W~~~~~i~~------~~~--~~~~~--~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+.++.. ... ....+ +.+..+|=.+-+....+.++.||+++.+=-.+
T Consensus 208 -----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 208 -----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred -----hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 11122221 111 11223 33444452344445567799999998874444
No 118
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=54.71 E-value=1.3e+02 Score=25.20 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=51.2
Q ss_pred EEEEEECCCceee-eeCCCCccCCCCceEEEEEEC-CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEALG-GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.+..+|+.+.+.. .+..... ....+.... +++.+....+. .+.+|.+.... .+..+.... .
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~------~~~~~~~~~-~ 178 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTD-----WVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGK------CVATLTGHT-G 178 (289)
T ss_pred eEEEEECCCcEEEEEeccCCC-----cEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccc------cceeEecCc-c
Confidence 7899999854432 2231111 122333333 45444443233 78899886421 122222111 0
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
...-+.+.+++..+++...++.+..||+++++....
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 133345556665677777677799999987665444
No 119
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.95 E-value=1.5e+02 Score=25.89 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee---CCCCccCCCCceEEEEEECCe
Q 017748 185 SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV---PLPPIVGIEGYYILLEALGGC 259 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i---~lP~~~~~~~~~~~l~~~~g~ 259 (366)
.|+. ++........-.|+-+-+-|...+...+ .+.+.|+.++ .|+.+ ..-...-..+.+..++-.+|.
T Consensus 2 rW~v--d~~kCVDaspLVV~~dskT~v~igSHs~-----~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 2 RWAV--DLRKCVDASPLVVCNDSKTLVVIGSHSG-----IVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGG 74 (354)
T ss_pred ceec--cchhhccCCcEEEecCCceEEEEecCCc-----eEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCc
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
||+++... .=.+|..+-.+.-+ .++..-...| .|+....++.+++.|+++..
T Consensus 75 lYfl~~~t------Gs~~w~f~~~~~vk---------------~~a~~d~~~g-lIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 75 LYFLCVKT------GSQIWNFVILETVK---------------VRAQCDFDGG-LIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EEEEEecc------hhheeeeeehhhhc---------------cceEEcCCCc-eEEEecCCCcEEEecccccc
No 120
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=53.30 E-value=70 Score=28.34 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+|..++-.+.+. .+-+|...+.+ +.-|... .... ..--+-...++..|+-+..|..+..+|.+|++-.+
T Consensus 58 ~gs~~aSgG~Dr-----~I~LWnv~gdc-eN~~~lk---gHsg--AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 58 DGSCFASGGSDR-----AIVLWNVYGDC-ENFWVLK---GHSG--AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred CCCeEeecCCcc-----eEEEEeccccc-cceeeec---cccc--eeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 455555555554 88999865543 3557765 1110 01122233566567777777789999999998543
No 121
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.97 E-value=1.4e+02 Score=29.96 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=37.1
Q ss_pred EEEEEECCCceeeeeCCCCccC-CCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVG-IEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
.|...|+++.+.. +|.... +......+....+.-.++...... -+.+|.++...--.+|.-.+.-|
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~----llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQ----LLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccc----eEEEEEcccchHhHhHhhccCCC
Confidence 6899999988775 444431 111222333333333333333332 79999999864345677655544
No 122
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=51.63 E-value=10 Score=34.00 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.8
Q ss_pred CCCCCcHHHHHHHHccCC--------cccceeeeccchhhhhhcCC
Q 017748 3 TSVQLPLDLIVDILIRLP--------VRSLARFRCVSRSFRSLIDG 40 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP--------~~~l~r~r~VcK~W~~li~s 40 (366)
.++.||.+++.+|+.|.- -+++..+..||+.|+....+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 467899999999999884 34688999999999997643
No 123
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.16 E-value=1.9e+02 Score=25.86 Aligned_cols=102 Identities=8% Similarity=-0.028 Sum_probs=51.6
Q ss_pred EEEEEECCCceeeee---CCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC
Q 017748 224 IIIAFDLKSEEFYQV---PLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV 298 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 298 (366)
-|..||+++.+.+.+ .......-.+....|.. .+++|+++-..... .+.||.++....+.+|.....-...
T Consensus 79 HVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~----nLGvy~ldr~~g~~~~L~~~ps~KG 154 (339)
T PF09910_consen 79 HVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHA----NLGVYSLDRRTGKAEKLSSNPSLKG 154 (339)
T ss_pred eEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcc----eeeeEEEcccCCceeeccCCCCcCc
Confidence 688999999887666 11111100001112222 26899988776655 8999999965433222221111111
Q ss_pred CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 299 GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 299 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+ .....++.-+. +...-..+.+||+.+++|
T Consensus 155 ~~-~~D~a~F~i~~----~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 155 TL-VHDYACFGINN----FHKGVSGIHCLDLISGKW 185 (339)
T ss_pred eE-eeeeEEEeccc----cccCCceEEEEEccCCeE
Confidence 11 01111221100 111123499999999999
No 124
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.47 E-value=3e+02 Score=27.98 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=65.2
Q ss_pred ceEECCcEEEEEeeCC-----CCCCCcEEEEEECCCceeeeeCCCCccC-----CCCceEEEEEE---CCeEEEEEeecC
Q 017748 202 SVFVNGALHWTAALNQ-----DADRNDIIIAFDLKSEEFYQVPLPPIVG-----IEGYYILLEAL---GGCLCLLCKFDD 268 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~-----~~~~~~~i~~fD~~~~~~~~i~lP~~~~-----~~~~~~~l~~~---~g~L~l~~~~~~ 268 (366)
..+..++.||+..... .-+....+++.+.+++.|...++|...- .......-+.. ++-|.+-+..-+
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 4677788888875431 1122348999999999999999998531 11122222222 334444333322
Q ss_pred CCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 269 DDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 269 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.+-||+++.. + +.+..... .-..-+++.++|..|.-..+|++|-+||...+
T Consensus 331 -----QLlVweWqsE----s----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 331 -----QLLVWEWQSE----S----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred -----eEEEEEeecc----c----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 8999998862 2 23322211 00233445566644444455667777777663
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.17 E-value=2e+02 Score=25.64 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=51.5
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeE--EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCL--CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L--~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.+-.+|+++++-..+.+.... ...+-..+|-+ |++++.-+. .+..|-+.... .+.++.+.
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~p-----vkt~~wv~~~~~~cl~TGSWDK----TlKfWD~R~~~------pv~t~~LP--- 156 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAP-----VKTCHWVPGMNYQCLVTGSWDK----TLKFWDTRSSN------PVATLQLP--- 156 (347)
T ss_pred ceEEEEccCCCeeeeeecccc-----eeEEEEecCCCcceeEeccccc----ceeecccCCCC------eeeeeecc---
Confidence 688999999988888766554 22233334444 666665444 89999877532 24455443
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+..++.-.-..+++...+..+.+|+++...-
T Consensus 157 -eRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 157 -ERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred -ceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 22223222222344444455577777755443
No 126
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=47.44 E-value=32 Score=32.72 Aligned_cols=132 Identities=11% Similarity=0.135 Sum_probs=75.6
Q ss_pred cceEECC--cEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCCCceEEEEEECCeEEEEEeecCC----C
Q 017748 201 CSVFVNG--ALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIEGYYILLEALGGCLCLLCKFDDD----D 270 (366)
Q Consensus 201 ~~v~~~G--~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~----~ 270 (366)
..|+-.| ++|-.++.+.-. ...-.-+|+...+.|..+. .|....++ ...+-....+||+.+.+-+. .
T Consensus 265 QMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH--RMVid~S~~KLYLlG~Y~~sS~r~~ 341 (723)
T KOG2437|consen 265 QMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCH--RMVIDISRRKLYLLGRYLDSSVRNS 341 (723)
T ss_pred eEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhh--hhhhhhhHhHHhhhhhccccccccc
Confidence 3677666 899887765311 1124567888999999883 44443211 22233345688887654331 2
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEecc--CCCc--eeeEEEEecCCcEEEEEee-----C----CeEEEEeCCCCeEEEe
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLN--VGGG--NVKPLVYSRSEDKVLLHAV-----R----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~--~~~~~~~~~~g~~i~~~~~-----~----~~~~~yd~~t~~~~~v 337 (366)
...+-++|++|-. +..|..+.-=.. ...+ +-+-+++..+.+.|++-.. + +.+++||.....|+..
T Consensus 342 ~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 342 KSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred cccccceEEEecC--CceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 2336689999974 467987532111 1101 2334455444433544321 1 2499999999999866
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=47.12 E-value=2.1e+02 Score=25.53 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=49.2
Q ss_pred cEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
..|..+|+.+..=..+.-.... ...+.-..+. ..+.+..+. .+.+|-....-. ..+.+ ..
T Consensus 75 g~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsgsWD~-----~ik~wD~R~~~~------~~~~d--~~- 135 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISGSWDK-----TIKFWDPRNKVV------VGTFD--QG- 135 (323)
T ss_pred ceEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEcccCc-----cEEEEecccccc------ccccc--cC-
Confidence 3799999987665555332221 1222222222 233344444 788886552100 00000 00
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
..+.++.-.|+.|++.+.+.+++.||+++...
T Consensus 136 -kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 136 -KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -ceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 23444444566788878888899999987654
No 128
>PRK04922 tolB translocation protein TolB; Provisional
Probab=47.12 E-value=2.5e+02 Score=26.46 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred CC-cEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECC-eEEEEEeecCCCCCCcEEEEEecc
Q 017748 206 NG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGG-CLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g-~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
+| .+++...... ...|..+|+.+++...+ ..+... ..+.... +| +|++....++ ..+||+++-
T Consensus 214 Dg~~la~~s~~~~----~~~l~~~dl~~g~~~~l~~~~g~~----~~~~~Sp-DG~~l~~~~s~~g-----~~~Iy~~d~ 279 (433)
T PRK04922 214 DGKKLAYVSFERG----RSAIYVQDLATGQRELVASFRGIN----GAPSFSP-DGRRLALTLSRDG-----NPEIYVMDL 279 (433)
T ss_pred CCCEEEEEecCCC----CcEEEEEECCCCCEEEeccCCCCc----cCceECC-CCCEEEEEEeCCC-----CceEEEEEC
Confidence 45 4566553321 13688899988776555 343221 1111111 34 4554443332 345555543
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEeeeec
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+ ++-. .+.... .......+..+|..|++..+. ..++.+|+++++.+.+ ...
T Consensus 280 ~~--g~~~---~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~ 334 (433)
T PRK04922 280 GS--RQLT---RLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQ 334 (433)
T ss_pred CC--CCeE---ECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecC
Confidence 22 1111 121111 112234566778778877642 2499999999988887 443
No 129
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=47.10 E-value=47 Score=24.51 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=28.6
Q ss_pred ccEEEEEecccc-ceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEE
Q 017748 117 RNIMLLLNPLTK-RHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL 165 (366)
Q Consensus 117 ~~~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~ 165 (366)
...+ ++||.|| .|.. ..+ ......+-+|+..+.|+||.+.
T Consensus 11 A~V~-~yd~~tKk~WvP--s~~------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVF-QIDPKTKKNWIP--ASK------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEE-EECCCCcceeEe--CCC------CceeEEEEecCCCcEEEEEEec
Confidence 3467 9999997 6653 332 1245678889999999999964
No 130
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.35 E-value=1.9e+02 Score=24.87 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=88.0
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
|.-+|....+..++ ||+-.|++..+==.- + .-..-++.|+.. -.||.-.. -...+.+++-++.+-
T Consensus 71 nskf~s~GgDk~v~-vwDV~TGkv~Rr~rg--H----~aqVNtV~fNee---sSVv~Sgs-----fD~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQ-VWDVNTGKVDRRFRG--H----LAQVNTVRFNEE---SSVVASGS-----FDSSVRLWDCRSRSF 135 (307)
T ss_pred ccccccCCCCceEE-EEEcccCeeeeeccc--c----cceeeEEEecCc---ceEEEecc-----ccceeEEEEcccCCC
Confidence 33344333456677 999999986541000 0 111222333322 22333221 123444455444444
Q ss_pred EEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee--CCCCcc---CCCCceEEEEEECCeEE
Q 017748 187 RRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV--PLPPIV---GIEGYYILLEALGGCLC 261 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~---~~~~~~~~l~~~~g~L~ 261 (366)
+.+.-+.... ..-.++-+.+....-+..+ ..+-.||+..++-..= --|... ..+........+++.|-
T Consensus 136 ePiQildea~-D~V~Si~v~~heIvaGS~D------GtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 136 EPIQILDEAK-DGVSSIDVAEHEIVAGSVD------GTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred Cccchhhhhc-CceeEEEecccEEEeeccC------CcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 3332111110 1123556666665544333 3688999987665432 233322 12334445555677777
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCC--CceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVN--DSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~--~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
++....+. .|+.|.+. .+....+++.. ..-.++-...+++|+.||+...+.-
T Consensus 209 LlDk~tGk---------lL~sYkGhkn~eykldc~l~q-------------sdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 209 LLDKETGK---------LLKSYKGHKNMEYKLDCCLNQ-------------SDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ecccchhH---------HHHHhcccccceeeeeeeecc-------------cceeEEeccCCceEEEEEeccceee
Confidence 77665542 25565321 22222233322 1213444566778999999877754
No 131
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.33 E-value=2.5e+02 Score=26.16 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=54.0
Q ss_pred CcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 222 NDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 222 ~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
.+.|+..|+.+.+...+ .-..-. .++...-.+..|.+.|.+..-.. -.-+||.++..+. ..|......+.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl----gH~~fsP~dp~li~fCHEGpw~~-Vd~RiW~i~~dg~-~~~~v~~~~~~--- 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL----GHVQFSPTDPTLIMFCHEGPWDL-VDQRIWTINTDGS-NVKKVHRRMEG--- 237 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E----EEEEEETTEEEEEEEEE-S-TTT-SS-SEEEEETTS----EESS---TT---
T ss_pred CceEEEEECCCCceeEEEecCccc----cCcccCCCCCCEEEEeccCCcce-eceEEEEEEcCCC-cceeeecCCCC---
Confidence 46899999999888776 333322 23333333567777776543110 0136899997653 44555444332
Q ss_pred ceeeEEEEecCCcEEEEEee--CC---eEEEEeCCCCeEEEeeee
Q 017748 301 GNVKPLVYSRSEDKVLLHAV--RG---DLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~--~~---~~~~yd~~t~~~~~v~~~ 340 (366)
....--.+..+|..|++... ++ .+..||++|++=+.+.++
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 12333344567767777543 22 399999999987766444
No 132
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=46.27 E-value=2.1e+02 Score=25.32 Aligned_cols=209 Identities=18% Similarity=0.134 Sum_probs=106.5
Q ss_pred eeceeEEeecC-CccEEEEEeccccceeecCCcCCCCCCC---------Cc---ceEEEeeecCCCCeEEEEEEEEcCCC
Q 017748 105 SCNGLLALEDS-RRNIMLLLNPLTKRHRVLPTFYRDLSRC---------VP---SLEGFGFDVGSGDFKLVKILAFGKPM 171 (366)
Q Consensus 105 s~~Gll~~~~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~---------~~---~~~~lg~d~~~~~ykvv~~~~~~~~~ 171 (366)
+-+|-|-+... ...+= =.||.|++....|-..-..... .+ .....-+|+++..++-+-+-. +...
T Consensus 70 apdG~VWft~qg~gaiG-hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~-~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQGTGAIG-HLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL-EHAD 147 (353)
T ss_pred CCCCceEEecCccccce-ecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-ccCC
Confidence 34666655543 23333 6799999999888655433220 00 111122344443333333211 1123
Q ss_pred CccEEEEEEecCCcEEEcc-----CC----------CcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCce
Q 017748 172 NYTEVAVFSLRVNSWRRIQ-----DF----------PYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEE 234 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~-----~~----------~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~ 234 (366)
.-.+..||+....-|-+-. .+ +........+++ -||.+|+-...+ ..|...|+.+..
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~~~~ 221 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPFAGH 221 (353)
T ss_pred CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccccCC
Confidence 4556778888888885432 01 001012233444 569998876555 379999999998
Q ss_pred eeeeCCCCccCCCCceEEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE--EecC
Q 017748 235 FYQVPLPPIVGIEGYYILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV--YSRS 311 (366)
Q Consensus 235 ~~~i~lP~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~ 311 (366)
-..++.|...... ...+.. --|++.+-+.... .+-.++. ...+|.. +.++-.. .++.. +...
T Consensus 222 aev~p~P~~~~~g--sRriwsdpig~~wittwg~g-------~l~rfdP--s~~sW~e-ypLPgs~---arpys~rVD~~ 286 (353)
T COG4257 222 AEVVPQPNALKAG--SRRIWSDPIGRAWITTWGTG-------SLHRFDP--SVTSWIE-YPLPGSK---ARPYSMRVDRH 286 (353)
T ss_pred cceecCCCccccc--ccccccCccCcEEEeccCCc-------eeeEeCc--cccccee-eeCCCCC---CCcceeeeccC
Confidence 8888888874111 111111 1244444322111 1122222 1234655 2333221 22322 2223
Q ss_pred CcEEEEE-eeCCeEEEEeCCCCeEEEe
Q 017748 312 EDKVLLH-AVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 312 g~~i~~~-~~~~~~~~yd~~t~~~~~v 337 (366)
| +|.+. ...+-+..||++|.++..+
T Consensus 287 g-rVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 287 G-RVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred C-cEEeeccccCceeecCcccceEEEe
Confidence 3 66664 3345599999999999887
No 133
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=45.16 E-value=63 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.3
Q ss_pred EEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 315 VLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 315 i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
|+.....-.++.||.++++|++. +++|
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~-~iEG 48 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKT-DIEG 48 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEE-EEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeec-CcEe
Confidence 44444333488888999999999 9988
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.13 E-value=2.3e+02 Score=25.41 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC---ceeeEEEE--e-c---CCcEEEEEeeC------
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG---GNVKPLVY--S-R---SEDKVLLHAVR------ 321 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~~~~~~~~--~-~---~g~~i~~~~~~------ 321 (366)
.-.|-|++...+. .++|++.-+...-..|.+.+.|..... .+..+.++ | . ..-.|.+..+.
T Consensus 124 hlGLklA~~~aDG----~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 124 HLGLKLAAASADG----ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred hcceEEEEeccCc----EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence 3344555554432 789988877655567999887763211 11111110 1 0 11134444332
Q ss_pred -CeEEEEeCCCCeEEEeeeecC
Q 017748 322 -GDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 322 -~~~~~yd~~t~~~~~v~~~~~ 342 (366)
-.++-||-..+||.++.++.+
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ceEEEEecCCcceeeeehhcCC
Confidence 137888888889999977765
No 135
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=44.51 E-value=2.8e+02 Score=26.22 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=55.8
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCcc-------CCCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIV-------GIEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~-------~~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
+|+.=..-|++.+..++ .|---++.+.+--.+ +++.+. ....+...|+++.|.=.++.+..+.
T Consensus 332 cv~~In~~HfvsGSdnG-----~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G---- 402 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNG-----SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG---- 402 (479)
T ss_pred eEEEecccceeeccCCc-----eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC----
Confidence 34433445566655543 455555554443222 333222 1112556778887754444443332
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~ 319 (366)
.+.+|...+.- ..=..++.++.. +|..-+++..+|+.|+...
T Consensus 403 ~vrLW~i~~g~--r~i~~l~~ls~~--GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 403 CVRLWKIEDGL--RAINLLYSLSLV--GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ceEEEEecCCc--cccceeeecccc--cEEEEEEEccCCCEEEEec
Confidence 89999999842 223444555543 4466677777775566553
No 136
>PRK04792 tolB translocation protein TolB; Provisional
Probab=44.40 E-value=2.9e+02 Score=26.32 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=74.3
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceE
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYI 251 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~ 251 (366)
...+.+++..++.-+.+...+... ......-+|. +++..... + ...|..+|+++.+...+.-.... ...+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPDG~~La~~~~~~-g---~~~Iy~~dl~tg~~~~lt~~~~~---~~~p 311 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN--GAPRFSPDGKKLALVLSKD-G---QPEIYVVDIATKALTRITRHRAI---DTEP 311 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc--CCeeECCCCCEEEEEEeCC-C---CeEEEEEECCCCCeEECccCCCC---ccce
Confidence 446777777777666554333211 1111123554 44443322 1 13689999998877655221111 0112
Q ss_pred EEEEECCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEE
Q 017748 252 LLEALGGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWY 327 (366)
Q Consensus 252 ~l~~~~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~y 327 (366)
... -+|+ |++...... ..+||.++-.+ +++.++. ..... .....+..+|+.|++..... .++.+
T Consensus 312 ~wS-pDG~~I~f~s~~~g-----~~~Iy~~dl~~--g~~~~Lt-~~g~~---~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 312 SWH-PDGKSLIFTSERGG-----KPQIYRVNLAS--GKVSRLT-FEGEQ---NLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred EEC-CCCCEEEEEECCCC-----CceEEEEECCC--CCEEEEe-cCCCC---CcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 111 2444 444432222 56888887532 3455432 11111 11235567887888865432 48899
Q ss_pred eCCCCeEEEe
Q 017748 328 DLERHRVRSI 337 (366)
Q Consensus 328 d~~t~~~~~v 337 (366)
|+++++.+.+
T Consensus 380 dl~~g~~~~l 389 (448)
T PRK04792 380 DLETGAMQVL 389 (448)
T ss_pred ECCCCCeEEc
Confidence 9999988776
No 137
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=42.99 E-value=1.4e+02 Score=28.24 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=57.4
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.++..|+.+..-..+ ..+... ..+...--+.+|.+....++ ..+||+++-.+. ..+. +.... +.
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~----~~P~fspDG~~l~f~~~rdg-----~~~iy~~dl~~~-~~~~----Lt~~~-gi 283 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNN----GAPAFSPDGSKLAFSSSRDG-----SPDIYLMDLDGK-NLPR----LTNGF-GI 283 (425)
T ss_pred eEEEEeccCCccceeeccCCcc----CCccCCCCCCEEEEEECCCC-----CccEEEEcCCCC-ccee----cccCC-cc
Confidence 577777776554433 333322 11111111234444444443 789999987653 2122 21111 11
Q ss_pred eeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEeeeecC
Q 017748 303 VKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v~~~~~ 342 (366)
...-.+.++|+.|++..+.. .++.||++++..+++ ...+
T Consensus 284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~ 325 (425)
T COG0823 284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSG 325 (425)
T ss_pred ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccC
Confidence 22334557888999987643 499999999999988 6643
No 138
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=42.39 E-value=2.5e+02 Score=25.10 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=55.8
Q ss_pred cEEEEEECCCc-----eeeee---CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEE
Q 017748 223 DIIIAFDLKSE-----EFYQV---PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLAT 294 (366)
Q Consensus 223 ~~i~~fD~~~~-----~~~~i---~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 294 (366)
..|+.|++.+. ++..+ +.+. ....+...+|+|.++.. . .+.++.++... ++.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g------~V~ai~~~~~~lv~~~g--~-----~l~v~~l~~~~---~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG------PVTAICSFNGRLVVAVG--N-----KLYVYDLDNSK---TLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-------EEEEEEETTEEEEEET--T-----EEEEEEEETTS---SEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC------cceEhhhhCCEEEEeec--C-----EEEEEEccCcc---cchhhhe
Confidence 46777777764 44333 2222 24567778898554443 3 89999999832 4888777
Q ss_pred eccCCCceeeEEEEecCCcEEEEEeeCCe--EEEEeCCCCeEEEe
Q 017748 295 LLNVGGGNVKPLVYSRSEDKVLLHAVRGD--LCWYDLERHRVRSI 337 (366)
Q Consensus 295 i~~~~~~~~~~~~~~~~g~~i~~~~~~~~--~~~yd~~t~~~~~v 337 (366)
...... . ..+...++.|++...... ++.|+.+.+++..+
T Consensus 126 ~~~~~~--i--~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 126 YDSPFY--I--TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp E-BSSS--E--EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred ecceEE--E--EEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 765432 2 222222446666654333 66778877778888
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=42.32 E-value=3e+02 Score=25.94 Aligned_cols=117 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+..+++........ .|..+|+.+++-..+ ..+... ..+...--+.+|++....++ ..+||.++..+
T Consensus 207 G~~la~~s~~~~~~----~I~~~dl~~g~~~~l~~~~g~~----~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~~~ 273 (427)
T PRK02889 207 GTKLAYVSFESKKP----VVYVHDLATGRRRVVANFKGSN----SAPAWSPDGRTLAVALSRDG-----NSQIYTVNADG 273 (427)
T ss_pred CCEEEEEEccCCCc----EEEEEECCCCCEEEeecCCCCc----cceEECCCCCEEEEEEccCC-----CceEEEEECCC
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCe---EEEEeCCCCeEEEeeeecC
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGD---LCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~---~~~yd~~t~~~~~v~~~~~ 342 (366)
.. ...+.... +......+.++|..|++..+... ++.+|+.+++.+.+ ..++
T Consensus 274 ~~-----~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g 327 (427)
T PRK02889 274 SG-----LRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTG 327 (427)
T ss_pred CC-----cEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCC
No 140
>PRK03629 tolB translocation protein TolB; Provisional
Probab=42.29 E-value=3e+02 Score=25.97 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEEEcCCCCccEEEEEEecCCcEEEccCCCccee-cCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeee-C
Q 017748 163 KILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQV-P 239 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~ 239 (366)
.+...........+.+++..++.-+.+...+.... ...++ +|. +++........ .|..+|+.+.+...+ .
T Consensus 212 ~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP---DG~~La~~~~~~g~~----~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 212 KLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP---DGSKLAFALSKTGSL----NLYVMDLASGQIRQVTD 284 (429)
T ss_pred EEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC---CCCEEEEEEcCCCCc----EEEEEECCCCCEEEccC
Q ss_pred CCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe
Q 017748 240 LPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 240 lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~ 319 (366)
-+... ..+...--+.+|++...... ..+||.++-.+. ...++.... +......+.++|+.|++..
T Consensus 285 ~~~~~----~~~~wSPDG~~I~f~s~~~g-----~~~Iy~~d~~~g-----~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 285 GRSNN----TEPTWFPDSQNLAYTSDQAG-----RPQVYKVNINGG-----APQRITWEG-SQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CCCCc----CceEECCCCCEEEEEeCCCC-----CceEEEEECCCC-----CeEEeecCC-CCccCEEECCCCCEEEEEE
Q ss_pred eCCe---EEEEeCCCCeEEEe
Q 017748 320 VRGD---LCWYDLERHRVRSI 337 (366)
Q Consensus 320 ~~~~---~~~yd~~t~~~~~v 337 (366)
.... ++.+|+++++++.+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred ccCCCceEEEEECCCCCeEEe
No 141
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.96 E-value=4.1e+02 Score=27.10 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=74.2
Q ss_pred cceEEC--CcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEE
Q 017748 201 CSVFVN--GALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 201 ~~v~~~--G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~i 277 (366)
..+.++ |-+-+.+..+. ..|..-++++++.-.+ .-..+. .........|.+.+-...+. .+++
T Consensus 439 scvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWDk-----TVRi 504 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWDK-----TVRI 504 (893)
T ss_pred eEEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccccc-----eEEE
Confidence 356677 88877776542 5788888888776554 333322 11112223566555555554 8999
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
|-+=+ +|..+.+++.... ..-+.+.++|++|.+..-++.+-.||.+.+.
T Consensus 505 W~if~-----s~~~vEtl~i~sd--vl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 505 WDIFS-----SSGTVETLEIRSD--VLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred EEeec-----cCceeeeEeeccc--eeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 98765 3666777765433 4556778889999999999899999998765
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.71 E-value=3.9e+02 Score=26.81 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=52.4
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEE-EECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLE-ALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|.--|+..|....+.-... +...+. ..++.+.+.++++. +++||.-++. ...|..... .
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn-----~vYsis~~~~~~~Ivs~gEDr-----tlriW~~~e~--------~q~I~lPtt-s 261 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTN-----FVYSISMALSDGLIVSTGEDR-----TLRIWKKDEC--------VQVITLPTT-S 261 (745)
T ss_pred eEEEEeccCceeeeeeccce-----EEEEEEecCCCCeEEEecCCc-----eEEEeecCce--------EEEEecCcc-c
Confidence 56666666665555544333 233344 44678888888776 8999987742 334443321 1
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
..-..+..+| .|+....|+.+.+|-.+..
T Consensus 262 iWsa~~L~Ng-DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 262 IWSAKVLLNG-DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEEEeeCC-CEEEeccCceEEEEEeccc
Confidence 3444455566 6777766776666666533
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.58 E-value=3.3e+02 Score=25.88 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=60.3
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
.+|......-++ +||-.|.+...|-++...... ++--|-..+.+ .|-++... ...+.+....|+.|-.
T Consensus 272 ~i~~s~rrky~y-syDle~ak~~k~~~~~g~e~~---~~e~FeVShd~-~fia~~G~-------~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 272 VIFTSGRRKYLY-SYDLETAKVTKLKPPYGVEEK---SMERFEVSHDS-NFIAIAGN-------NGHIHLLHAKTKELIT 339 (514)
T ss_pred EEEecccceEEE-EeeccccccccccCCCCcccc---hhheeEecCCC-CeEEEccc-------CceEEeehhhhhhhhh
Confidence 455555556677 999999999888776543322 22223322322 24443322 4456777777877743
Q ss_pred ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee
Q 017748 189 IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV 238 (366)
Q Consensus 189 ~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i 238 (366)
.=.++-... .-...-+|+.-|..+.. ..|..+|+..+.....
T Consensus 340 s~KieG~v~--~~~fsSdsk~l~~~~~~------GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 340 SFKIEGVVS--DFTFSSDSKELLASGGT------GEVYVWNLRQNSCLHR 381 (514)
T ss_pred eeeeccEEe--eEEEecCCcEEEEEcCC------ceEEEEecCCcceEEE
Confidence 211111111 00111456666766544 3799999998855443
No 144
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=40.13 E-value=3.1e+02 Score=25.41 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=55.5
Q ss_pred cEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 208 ALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 208 ~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
.++++...+. ..+..+|.++.+. ..++..... +..+... +|+..++...+. .+.++-+..
T Consensus 6 ~l~~V~~~~~-----~~v~viD~~t~~~~~~i~~~~~~-----h~~~~~s~Dgr~~yv~~rdg-----~vsviD~~~--- 67 (369)
T PF02239_consen 6 NLFYVVERGS-----GSVAVIDGATNKVVARIPTGGAP-----HAGLKFSPDGRYLYVANRDG-----TVSVIDLAT--- 67 (369)
T ss_dssp GEEEEEEGGG-----TEEEEEETTT-SEEEEEE-STTE-----EEEEE-TT-SSEEEEEETTS-----EEEEEETTS---
T ss_pred cEEEEEecCC-----CEEEEEECCCCeEEEEEcCCCCc-----eeEEEecCCCCEEEEEcCCC-----eEEEEECCc---
Confidence 4455554432 3799999988654 555554322 2223332 465444443333 666665554
Q ss_pred CCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEE
Q 017748 286 NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRS 336 (366)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~ 336 (366)
...+.++....- ..-+++..+|..++... ..+.+..+|.+|.+..+
T Consensus 68 ---~~~v~~i~~G~~--~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 68 ---GKVVATIKVGGN--PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp ---SSEEEEEE-SSE--EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred ---ccEEEEEecCCC--cceEEEcCCCCEEEEEecCCCceeEecccccccee
Confidence 225666765432 44466677886666653 46679999999876544
No 145
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.42 E-value=1.8e+02 Score=26.63 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=42.4
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec-cCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL-NVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..+.....+. .|.+|.+.-. .-+.++. .. .+.+-+++...|..|+-+.+|..+-+||+++++=.+.
T Consensus 305 ~~l~s~SrDk-----tIk~wdv~tg------~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 305 QVLGSGSRDK-----TIKIWDVSTG------MCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cEEEeecccc-----eEEEEeccCC------eEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 4444444444 7899988762 1122221 11 3466778887786777778777799999999885544
No 146
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=38.27 E-value=20 Score=31.09 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=32.6
Q ss_pred CCCCCcHHHHHHHHccCC-cccceeeeccchhhhhhcCChhHHH
Q 017748 3 TSVQLPLDLIVDILIRLP-VRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP-~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
.+.+||.+++.+||.||| -.+|..+..|--.-..++.+....+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 456899999999999998 6788887777666666666554433
No 147
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=38.03 E-value=1.8e+02 Score=22.00 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=52.8
Q ss_pred CccEEEEEEecCCcEEEccCC--CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEE-ECCCceeeee--CCCCccCC
Q 017748 172 NYTEVAVFSLRVNSWRRIQDF--PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAF-DLKSEEFYQV--PLPPIVGI 246 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~--~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~f-D~~~~~~~~i--~lP~~~~~ 246 (366)
....+-.||.++.+|+.+..+ +........-+-.+|++-.+............|-.+ |.++++|+.. .+|....+
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~ 97 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSWQH 97 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHHhc
Confidence 356677899999999988654 121113333456889998887665332112344444 6778899765 46654311
Q ss_pred ----CCceEEEEEECCeEEEE
Q 017748 247 ----EGYYILLEALGGCLCLL 263 (366)
Q Consensus 247 ----~~~~~~l~~~~g~L~l~ 263 (366)
......-+.-.|++.++
T Consensus 98 ~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 98 FVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccCCcEEEEEEEcCCCEEEEE
Confidence 11122222235787776
No 148
>PTZ00334 trans-sialidase; Provisional
Probab=37.64 E-value=2.5e+02 Score=28.93 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred CcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEEC-CeEEEEEeecCCCCCCcEE
Q 017748 200 TCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALG-GCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 200 ~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~~~~l~ 276 (366)
.++|. -||.+-+-....+.......++.|-..+..|..- -+|+. ....+.+++.+ |+|.|+..+++- +-.
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~---gC~~P~I~EWe~gkLlM~t~C~dG----~Rr 335 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSAD---GCSDPSVVEWKEGKLMMMTACDDG----RRR 335 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCC---CCCCCEEEEEcCCeEEEEEEeCCC----CEE
Confidence 34554 4688777654322222335677776666678544 23332 23577899996 999998887652 445
Q ss_pred EEEeccCCCCCceEE
Q 017748 277 LWVMKEYGVNDSWTK 291 (366)
Q Consensus 277 iW~l~~~~~~~~W~~ 291 (366)
|++=.| ...+|.+
T Consensus 336 VYES~D--mG~tWtE 348 (780)
T PTZ00334 336 VYESGD--KGDSWTE 348 (780)
T ss_pred EEEECC--CCCChhh
Confidence 655544 3466877
No 149
>PRK00178 tolB translocation protein TolB; Provisional
Probab=37.51 E-value=3.5e+02 Score=25.35 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=75.1
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceE
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYI 251 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~ 251 (366)
...+.+++..++.-+.+...+... ......-+|. +++...... . ..|..+|+++.+...+.-.... ...+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~g-~---~~Iy~~d~~~~~~~~lt~~~~~---~~~~ 292 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKDG-N---PEIYVMDLASRQLSRVTNHPAI---DTEP 292 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccCC-C---ceEEEEECCCCCeEEcccCCCC---cCCe
Confidence 456788888888777665433111 0111122554 444433221 1 3689999998877655221111 0112
Q ss_pred EEEEECC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEE
Q 017748 252 LLEALGG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWY 327 (366)
Q Consensus 252 ~l~~~~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~y 327 (366)
... -+| +|++...... ..+||.++-.+ +++.++.. .. . ......+..+|+.|++..... .++.+
T Consensus 293 ~~s-pDg~~i~f~s~~~g-----~~~iy~~d~~~--g~~~~lt~-~~-~--~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 293 FWG-KDGRTLYFTSDRGG-----KPQIYKVNVNG--GRAERVTF-VG-N--YNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred EEC-CCCCEEEEEECCCC-----CceEEEEECCC--CCEEEeec-CC-C--CccceEECCCCCEEEEEEccCCceEEEEE
Confidence 211 144 4555433222 45677776432 33444321 11 1 123345567787887776432 49999
Q ss_pred eCCCCeEEEe
Q 017748 328 DLERHRVRSI 337 (366)
Q Consensus 328 d~~t~~~~~v 337 (366)
|+++++.+.+
T Consensus 361 dl~tg~~~~l 370 (430)
T PRK00178 361 DLQRGSVRIL 370 (430)
T ss_pred ECCCCCEEEc
Confidence 9999988777
No 150
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=36.57 E-value=3e+02 Score=24.31 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC
Q 017748 220 DRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV 298 (366)
Q Consensus 220 ~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 298 (366)
.....+-.-|+.+-+......-... +.-.+++. +|.||.-++.+. .+-+|-|.+... ++.++..
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~~----~v~t~~vSpDGslcasGgkdg-----~~~LwdL~~~k~------lysl~a~ 233 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHSG----YVNTVTVSPDGSLCASGGKDG-----EAMLWDLNEGKN------LYSLEAF 233 (315)
T ss_pred cCCceEEEEccCCcchhhccccccc----cEEEEEECCCCCEEecCCCCc-----eEEEEEccCCce------eEeccCC
Q ss_pred CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 299 GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 299 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.. ..-++|.++. ..+....+..+..+|++++.
T Consensus 234 ~~--v~sl~fspnr-ywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 234 DI--VNSLCFSPNR-YWLCAATATSIKIWDLESKA 265 (315)
T ss_pred Ce--EeeEEecCCc-eeEeeccCCceEEEeccchh
No 151
>PLN02772 guanylate kinase
Probab=35.23 E-value=2.9e+02 Score=25.87 Aligned_cols=80 Identities=9% Similarity=0.147 Sum_probs=48.5
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEecCCcEEEEEeeC----CeEEE
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAVR----GDLCW 326 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~~----~~~~~ 326 (366)
..++.++++|++++.++. ......+|.+|.. ...|+.-...+..+.. .-+-.++..++ +|++...+ ..+..
T Consensus 29 tav~igdk~yv~GG~~d~-~~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~-rilv~~~~~~~~~~~w~ 104 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEG-NTLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKD-RILVIKKGSAPDDSIWF 104 (398)
T ss_pred eeEEECCEEEEEcccCCC-ccccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCc-eEEEEeCCCCCccceEE
Confidence 457789999999986652 2236789999984 4679987665543331 13334444444 77776532 23556
Q ss_pred EeCCCCeEE
Q 017748 327 YDLERHRVR 335 (366)
Q Consensus 327 yd~~t~~~~ 335 (366)
..+.|.-.+
T Consensus 105 l~~~t~~~~ 113 (398)
T PLN02772 105 LEVDTPFVR 113 (398)
T ss_pred EEcCCHHHH
Confidence 666555443
No 152
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.16 E-value=4.1e+02 Score=25.10 Aligned_cols=190 Identities=10% Similarity=0.082 Sum_probs=101.0
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
...++ +.|..|++...|-..+.. .. ...+.|. +..-++.... .....+.+++..++.++.+...+..
T Consensus 212 ~~~Iy-v~dl~tg~~~~lt~~~g~-----~~--~~~~SPD-G~~la~~~~~----~g~~~Iy~~dl~~g~~~~LT~~~~~ 278 (419)
T PRK04043 212 KPTLY-KYNLYTGKKEKIASSQGM-----LV--VSDVSKD-GSKLLLTMAP----KGQPDIYLYDTNTKTLTQITNYPGI 278 (419)
T ss_pred CCEEE-EEECCCCcEEEEecCCCc-----EE--eeEECCC-CCEEEEEEcc----CCCcEEEEEECCCCcEEEcccCCCc
Confidence 45788 999999988887543211 11 1223332 2233333221 2246788888888999888654321
Q ss_pred eecCCcceEECC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECC-eEEEEEeecCCCC-C
Q 017748 196 WVTGTCSVFVNG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGG-CLCLLCKFDDDDD-D 272 (366)
Q Consensus 196 ~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g-~L~l~~~~~~~~~-~ 272 (366)
. ......-+| .+|+....... ..|...|+.+.+...+-.-.. ...... -+| .|.++........ .
T Consensus 279 d--~~p~~SPDG~~I~F~Sdr~g~----~~Iy~~dl~~g~~~rlt~~g~-----~~~~~S-PDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 279 D--VNGNFVEDDKRIVFVSDRLGY----PNIFMKKLNSGSVEQVVFHGK-----NNSSVS-TYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred c--CccEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEeCccCCC-----cCceEC-CCCCEEEEEEcCCCcccCC
Confidence 1 111122345 57777654322 379999999887755532111 111122 244 4544443321100 1
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v 337 (366)
...+||.++-.+ +.+..+.. ... .....+.++|..|++....+ .+..+++..++-..+
T Consensus 347 ~~~~I~v~d~~~--g~~~~LT~---~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 347 NTFNLYLISTNS--DYIRRLTA---NGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCcEEEEEECCC--CCeEECCC---CCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 247888887532 33443322 111 22244677887788876432 388899988776666
No 153
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=33.77 E-value=2.8e+02 Score=24.28 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred eEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecC
Q 017748 203 VFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDD 268 (366)
Q Consensus 203 v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~ 268 (366)
-+-+|++|-.+.......--..+..-+..-+.|+.+.+|... ++ ...-.+..++.|+++..+..
T Consensus 197 kyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nv-Hh-tnlPFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 197 KYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNV-HH-TNLPFAKVGDVLYMFGSERA 260 (367)
T ss_dssp EEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT----S-S---EEEETTEEEEEEE-SS
T ss_pred hhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccc-cc-cCCCceeeCCEEEEEecccc
Confidence 478999999887654321113677888888999999999776 22 34456778999999888653
No 154
>PTZ00420 coronin; Provisional
Probab=33.65 E-value=3.3e+02 Score=26.96 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=32.4
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+.||-+.... .+..+..... ..-+.+..+|..+.....++.+..||+++++..
T Consensus 149 tIrIWDl~tg~------~~~~i~~~~~--V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 149 FVNIWDIENEK------RAFQINMPKK--LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEECCCCc------EEEEEecCCc--EEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 89999887521 2223322111 344556677744444455667999999988654
No 155
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.41 E-value=1.7e+02 Score=28.57 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.2
Q ss_pred CcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 312 EDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 312 g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
+++|++...+++++++|.+|++..+-.++
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 34888888888899999999998765343
No 156
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=31.76 E-value=5.9e+02 Score=26.21 Aligned_cols=98 Identities=14% Similarity=0.262 Sum_probs=57.7
Q ss_pred EEEEEECCCcee---eeeCCCCccCCCCceEEEEEEC--CeEEEEEe-ecCCCCCCcEEEEEeccCC----CCCceEEEE
Q 017748 224 IIIAFDLKSEEF---YQVPLPPIVGIEGYYILLEALG--GCLCLLCK-FDDDDDDRPWDLWVMKEYG----VNDSWTKLA 293 (366)
Q Consensus 224 ~i~~fD~~~~~~---~~i~lP~~~~~~~~~~~l~~~~--g~L~l~~~-~~~~~~~~~l~iW~l~~~~----~~~~W~~~~ 293 (366)
..-.||.....| +.|..|... .......++ -+..+++. .++ .+.||+++++. ....|....
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~----~~vat~~~~~~rs~~~vta~~dg-----~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGN----AFVATIFLNPTRSVRCVTASVDG-----DFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCc----eeEEEEEecCcccceeEEeccCC-----eEEEEEEecccccCcCccceEEee
Confidence 556677777777 345777764 222222222 22133333 333 89999996542 345798865
Q ss_pred EeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 294 TLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.=..... -..-.++..+| .++...-++.+..||..+.
T Consensus 504 i~sy~k~-~i~a~~fs~dG-slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 504 IGSYHKT-PITALCFSQDG-SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeccccC-cccchhhcCCC-cEEEEecCCEEEEecCCCh
Confidence 4433111 02234555667 7777777778999999994
No 157
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.63 E-value=2.4e+02 Score=29.14 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=22.5
Q ss_pred CcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 312 EDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 312 g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+++||+...++++++.|.+|++..+-
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~ 285 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCED 285 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEE
Confidence 44899998899999999999998764
No 158
>PRK04792 tolB translocation protein TolB; Provisional
Probab=31.33 E-value=4.7e+02 Score=24.91 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=61.6
Q ss_pred CC-cEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+| .+.|...... ...|..+|+.+.+-..+ ..+... ..+...--+..|+++...++ ..+||.++-.
T Consensus 228 DG~~La~~s~~~g----~~~L~~~dl~tg~~~~lt~~~g~~----~~~~wSPDG~~La~~~~~~g-----~~~Iy~~dl~ 294 (448)
T PRK04792 228 DGRKLAYVSFENR----KAEIFVQDIYTQVREKVTSFPGIN----GAPRFSPDGKKLALVLSKDG-----QPEIYVVDIA 294 (448)
T ss_pred CCCEEEEEEecCC----CcEEEEEECCCCCeEEecCCCCCc----CCeeECCCCCEEEEEEeCCC-----CeEEEEEECC
Confidence 45 4555554321 13799999988766554 333221 11222222234655443333 5678877653
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEeeeec
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v~~~~ 341 (366)
+ ++..++.. .. .......+..+|+.|++..+. ..++.+|+++++.+++ ..+
T Consensus 295 t--g~~~~lt~---~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~ 348 (448)
T PRK04792 295 T--KALTRITR---HR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE 348 (448)
T ss_pred C--CCeEECcc---CC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC
Confidence 2 23333211 11 012233456677778777542 2599999999998887 443
No 159
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=30.97 E-value=3.1e+02 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.2
Q ss_pred CCeEEEEeCCCCeEEEeeeecC
Q 017748 321 RGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 321 ~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
++.||.|++.|+....+++...
T Consensus 139 GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred CCeEEEEEccCCceeEeeeccc
Confidence 3459999999999999977643
No 160
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=30.68 E-value=4.2e+02 Score=24.16 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=61.0
Q ss_pred cEEEEEECCCceeeeeCCCCcc-CCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIV-GIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~-~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
..+..+|+++++...+..|... ..+.....+.-. +++ |++.......+ .+.+...+-.....++..... ....
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~---~~~l~~~d~~tg~~~~~~~e~-~~~W 233 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN---RLDLVLCDASTGETRVVLEET-SDGW 233 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST---EEEEEEEEECTTTCEEEEEEE-SSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC---EEEEEEEECCCCceeEEEEec-CCcc
Confidence 4788999999988888877422 122233444443 455 77666655433 777777765322333443222 2222
Q ss_pred CceeeEEEEe-cCCcEEEEEeeC-C--eEEEEeCCCCeEEEe
Q 017748 300 GGNVKPLVYS-RSEDKVLLHAVR-G--DLCWYDLERHRVRSI 337 (366)
Q Consensus 300 ~~~~~~~~~~-~~g~~i~~~~~~-~--~~~~yd~~t~~~~~v 337 (366)
+....+..+. .+++.+++.... + +++.||..++..+.+
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 2224455554 556566666542 2 599999999886655
No 161
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=30.39 E-value=4.1e+02 Score=23.95 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=76.6
Q ss_pred EEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcce--EECCcEEEEEeeCCCCCCCcEEE
Q 017748 149 GFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSV--FVNGALHWTAALNQDADRNDIII 226 (366)
Q Consensus 149 ~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v--~~~G~lYw~~~~~~~~~~~~~i~ 226 (366)
.+.|+|. ++|-++.- +.....+|+..|-+--.-.++.......-..| .-.|.+|..+..+ ..|-
T Consensus 221 siSfHPs-GefllvgT-------dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD------G~Ik 286 (430)
T KOG0640|consen 221 SISFHPS-GEFLLVGT-------DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD------GAIK 286 (430)
T ss_pred eEeecCC-CceEEEec-------CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC------CcEE
Confidence 3444443 44555443 25567888888754433323222111111112 1348899887665 3677
Q ss_pred EEECCCcee-eee-CCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-cc-CCC
Q 017748 227 AFDLKSEEF-YQV-PLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LN-VGG 300 (366)
Q Consensus 227 ~fD~~~~~~-~~i-~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~-~~~ 300 (366)
.+|--+++. ..+ ....+ ..++-++ -+|+-.+-.+.+. .+.+|++-..- =.+.++= +. ...
T Consensus 287 lwDGVS~rCv~t~~~AH~g-----sevcSa~Ftkn~kyiLsSG~DS-----~vkLWEi~t~R----~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGNAHGG-----SEVCSAVFTKNGKYILSSGKDS-----TVKLWEISTGR----MLKEYTGAGTTGRQ 352 (430)
T ss_pred eeccccHHHHHHHHhhcCC-----ceeeeEEEccCCeEEeecCCcc-----eeeeeeecCCc----eEEEEecCCcccch
Confidence 888766544 333 33222 2222233 2555555444443 78899986521 1111110 00 000
Q ss_pred ceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEE
Q 017748 301 GNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRS 336 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~ 336 (366)
....-..+....+.|++.... ..++.+|-+|..-..
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 012222344455566666543 348888887765433
No 162
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.34 E-value=4.3e+02 Score=24.21 Aligned_cols=204 Identities=12% Similarity=-0.010 Sum_probs=102.4
Q ss_pred eeeceeEEeecCCccEEEEEeccccceee--cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 104 GSCNGLLALEDSRRNIMLLLNPLTKRHRV--LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 104 ~s~~Gll~~~~~~~~~~~V~NP~t~~~~~--LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
.-.+|.+.....+.+++ -.||.|++.++ -....... .... .... .+ +++.-.. ...+..|+.
T Consensus 65 ~~~dg~v~~~~~~G~i~-A~d~~~g~~~W~~~~~~~~~~---~~~~--~~~~--~G--~i~~g~~------~g~~y~ld~ 128 (370)
T COG1520 65 ADGDGTVYVGTRDGNIF-ALNPDTGLVKWSYPLLGAVAQ---LSGP--ILGS--DG--KIYVGSW------DGKLYALDA 128 (370)
T ss_pred EeeCCeEEEecCCCcEE-EEeCCCCcEEecccCcCccee---ccCc--eEEe--CC--eEEEecc------cceEEEEEC
Confidence 44567776655555788 88999988432 11110000 0000 1111 11 2222211 114555555
Q ss_pred --cCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECC
Q 017748 182 --RVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGG 258 (366)
Q Consensus 182 --~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g 258 (366)
++..|+.-..- . .......+..+|.+|..+..+ .++++|..+.+.... ..+... ........+..+|
T Consensus 129 ~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s~~g-------~~~al~~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~ 198 (370)
T COG1520 129 STGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGTDDG-------HLYALNADTGTLKWTYETPAPL-SLSIYGSPAIASG 198 (370)
T ss_pred CCCcEEEEEecCC-C-eEEecCcEEcCcEEEEecCCC-------eEEEEEccCCcEEEEEecCCcc-ccccccCceeecc
Confidence 44578764333 1 224455788999999987333 799999997644332 222101 0001111224456
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-----ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-----GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.+++-... .. . .+|.++...+...|+.......... .....-.+..++ .++.....++++++|..+++
T Consensus 199 ~vy~~~~~-~~----~-~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 199 TVYVGSDG-YD----G-ILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred eEEEecCC-Cc----c-eEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCc
Confidence 66654332 11 2 6777776545567887644433211 001111112233 45566666679999999988
Q ss_pred EEEeeee
Q 017748 334 VRSIVEI 340 (366)
Q Consensus 334 ~~~v~~~ 340 (366)
..+.++.
T Consensus 272 ~~W~~~~ 278 (370)
T COG1520 272 LIWSFPA 278 (370)
T ss_pred eEEEEec
Confidence 7766555
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=30.20 E-value=3.7e+02 Score=23.36 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=34.8
Q ss_pred CcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEE-EECCeEEEEEeecCCCCCCcEEEEEecc
Q 017748 207 GALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLE-ALGGCLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 207 G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~-~~~g~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
|.+..-+++. .+...|+++++++.. .-..+. .+.... +.++++ +-+.+++ ..+||-.+.
T Consensus 127 nSi~~AgGD~-------~~y~~dlE~G~i~r~~rGHtDY----vH~vv~R~~~~qi-lsG~EDG-----tvRvWd~kt 187 (325)
T KOG0649|consen 127 NSILFAGGDG-------VIYQVDLEDGRIQREYRGHTDY----VHSVVGRNANGQI-LSGAEDG-----TVRVWDTKT 187 (325)
T ss_pred CcEEEecCCe-------EEEEEEecCCEEEEEEcCCcce----eeeeeecccCcce-eecCCCc-----cEEEEeccc
Confidence 6666666443 899999999999776 444432 222222 223333 2333344 788887765
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=30.06 E-value=2e+02 Score=28.43 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=63.5
Q ss_pred EEEEEECCCceeeee--CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV--PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|.-||.++..|+.- +|=....+.+..+.+.-..|+..++....+. .+..|.++..+-.+ . ++.....+
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs----T~r~Wdvk~s~l~G----~-~~~~GH~~ 145 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS----TIRPWDVKTSRLVG----G-RLNLGHTG 145 (720)
T ss_pred ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc----eeeeeeeccceeec----c-eeeccccc
Confidence 799999999888721 1111111344567777778999999998776 89999998753211 0 11111111
Q ss_pred eeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v 337 (366)
-..-.++...+..+|.. +.|+.+..+|.+.+.+...
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence 13335555555233332 3456699999988885544
No 165
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=29.94 E-value=4.4e+02 Score=24.23 Aligned_cols=100 Identities=10% Similarity=0.108 Sum_probs=54.5
Q ss_pred cEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.....+|..+..| ...++..- .....+.-..+.-+++++.-.. .+.||..... ...|...+.+...
T Consensus 86 D~AflW~~~~ge~-~~eltgHK---DSVt~~~FshdgtlLATGdmsG----~v~v~~~stg--~~~~~~~~e~~di---- 151 (399)
T KOG0296|consen 86 DLAFLWDISTGEF-AGELTGHK---DSVTCCSFSHDGTLLATGDMSG----KVLVFKVSTG--GEQWKLDQEVEDI---- 151 (399)
T ss_pred ceEEEEEccCCcc-eeEecCCC---CceEEEEEccCceEEEecCCCc----cEEEEEcccC--ceEEEeecccCce----
Confidence 3677788887773 33444432 1222333333444444443221 7888887763 3557766444331
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.-+..++.+..++....++.+.+|....+...++
T Consensus 152 -eWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 152 -EWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred -EEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 2233344442344445667799999998776666
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.84 E-value=2.3e+02 Score=25.67 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=32.4
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDL 329 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~ 329 (366)
.+-+|.|+..+....=...+.+... ..+-.++..+|..|+++.++..+..+|-
T Consensus 330 ~v~vwdL~~~ep~~~ttl~~s~~~~---tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLTHSKSGS---TVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cEEEEECCCCCCccCceEEeccccc---eeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 7889999886543111112222221 2666788888866777777776777764
No 167
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.63 E-value=2.4e+02 Score=24.45 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=51.7
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEE-EeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLA-TLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~ 302 (366)
.-..||+.+++++.+.++...- +.....--+|+|..+++..+ +.+.+++..-........|.+.. .|.... +
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~F---CSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R--W 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTF---CSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGR--W 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCc---ccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCC--c
Confidence 4678999999999988876651 11122224788888877654 33456654433322345698864 444433 2
Q ss_pred eeEEEEecCCcEEEEEee
Q 017748 303 VKPLVYSRSEDKVLLHAV 320 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~ 320 (366)
+--...-.+| +|++...
T Consensus 120 YpT~~~L~DG-~vlIvGG 136 (243)
T PF07250_consen 120 YPTATTLPDG-RVLIVGG 136 (243)
T ss_pred cccceECCCC-CEEEEeC
Confidence 4444455677 5555543
No 168
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.04 E-value=7.7e+02 Score=26.72 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=38.9
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC------C--ceeeEE--EEecCCcEEEEEee-CCeE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG------G--GNVKPL--VYSRSEDKVLLHAV-RGDL 324 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~------~--~~~~~~--~~~~~g~~i~~~~~-~~~~ 324 (366)
-+|.||++...+. .+.+|-.+. .....+....... . .+..|. ++..+| .+++... +..+
T Consensus 813 ~dG~LYVADs~N~-----rIrviD~~t----g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~I 882 (1057)
T PLN02919 813 KDGQIYVADSYNH-----KIKKLDPAT----KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLI 882 (1057)
T ss_pred CCCcEEEEECCCC-----EEEEEECCC----CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEE
Confidence 3578888876554 787776653 1122222111100 0 124454 445666 6776643 4569
Q ss_pred EEEeCCCCeE
Q 017748 325 CWYDLERHRV 334 (366)
Q Consensus 325 ~~yd~~t~~~ 334 (366)
..+|+++++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999999876
No 169
>PRK10115 protease 2; Provisional
Probab=28.95 E-value=6.4e+02 Score=25.72 Aligned_cols=117 Identities=8% Similarity=-0.004 Sum_probs=65.0
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECC-CceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLK-SEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~-~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
.++.+|..+..+.. ...|+..|+. .++|..+--+... ...-.+...++.|++....+. .-.+++++..
T Consensus 278 ~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~~~~---~~i~~~~~~~~~l~~~~~~~g-----~~~l~~~~~~ 346 (686)
T PRK10115 278 YQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPPREN---IMLEGFTLFTDWLVVEERQRG-----LTSLRQINRK 346 (686)
T ss_pred CCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECCCCC---CEEEEEEEECCEEEEEEEeCC-----EEEEEEEcCC
Confidence 34677766654322 2478988988 5788777554221 012233445788888777666 6667777642
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEe--cCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYS--RSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
+ . ++..+...........+.. .+++.+++.... ..++.||+++++++.+
T Consensus 347 ~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l 401 (686)
T PRK10115 347 T--R---EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVL 401 (686)
T ss_pred C--C---ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 2 1 1233332111011222222 233466666442 3599999999987766
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=28.71 E-value=4.9e+02 Score=24.32 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=45.4
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecCcccCeeeeeEE
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRRCDMRTVC 353 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y 353 (366)
.+.||-++.... +.++....+ ..-+.+..+|+.+.-...|.++-++|+++++.... ... +++...+..+|
T Consensus 155 ~v~iWnv~tgea------li~l~hpd~--i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e-~~~-heG~k~~Raif 224 (472)
T KOG0303|consen 155 TVSIWNVGTGEA------LITLDHPDM--VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE-GVA-HEGAKPARAIF 224 (472)
T ss_pred eEEEEeccCCce------eeecCCCCe--EEEEEeccCCceeeeecccceeEEEcCCCCcEeee-ccc-ccCCCcceeEE
Confidence 888998876321 233443333 55566677785555556677899999999998777 422 23344444444
Q ss_pred ecC
Q 017748 354 VNT 356 (366)
Q Consensus 354 ~~s 356 (366)
..+
T Consensus 225 l~~ 227 (472)
T KOG0303|consen 225 LAS 227 (472)
T ss_pred ecc
Confidence 443
No 171
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.49 E-value=6.7e+02 Score=25.49 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=92.6
Q ss_pred eeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 104 GSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 104 ~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
=+.||=.+...-.+.+. +.+-.|++.. +|........ .... +..+|. +=+++.+.. ..-.++|+..+
T Consensus 27 ~s~nG~~L~t~~~d~Vi-~idv~t~~~~-l~s~~~ed~d-~ita--~~l~~d--~~~L~~a~r------s~llrv~~L~t 93 (775)
T KOG0319|consen 27 WSSNGQHLYTACGDRVI-IIDVATGSIA-LPSGSNEDED-EITA--LALTPD--EEVLVTASR------SQLLRVWSLPT 93 (775)
T ss_pred ECCCCCEEEEecCceEE-EEEccCCcee-cccCCccchh-hhhe--eeecCC--ccEEEEeec------cceEEEEEccc
Confidence 34455554443344455 7777888876 6655433332 2333 333333 223333332 55688999987
Q ss_pred C----cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-C-CCCccCCCCceEEEEEEC
Q 017748 184 N----SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-P-LPPIVGIEGYYILLEALG 257 (366)
Q Consensus 184 ~----~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~-lP~~~~~~~~~~~l~~~~ 257 (366)
+ +|+..-.-|.- .+.+++.-.-++..+.. ..+.+-|.+.+....- . .|... .....+
T Consensus 94 gk~irswKa~He~Pvi------~ma~~~~g~LlAtggaD----~~v~VWdi~~~~~th~fkG~gGvV-------ssl~F~ 156 (775)
T KOG0319|consen 94 GKLIRSWKAIHEAPVI------TMAFDPTGTLLATGGAD----GRVKVWDIKNGYCTHSFKGHGGVV-------SSLLFH 156 (775)
T ss_pred chHhHhHhhccCCCeE------EEEEcCCCceEEecccc----ceEEEEEeeCCEEEEEecCCCceE-------EEEEeC
Confidence 5 68774333321 12233333444443332 3788888887655332 2 22221 122222
Q ss_pred C---eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 258 G---CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g---~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
. +..++.+..+. .+.+|-+.+.. . .++.+.. ...-..-+++..++..++-...|.-+..||+.+.+-
T Consensus 157 ~~~~~~lL~sg~~D~----~v~vwnl~~~~---t--cl~~~~~-H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 157 PHWNRWLLASGATDG----TVRVWNLNDKR---T--CLHTMIL-HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK 226 (775)
T ss_pred CccchhheeecCCCc----eEEEEEcccCc---h--HHHHHHh-hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh
Confidence 1 11222222222 67777777521 1 1111110 001144456666676666667666688888865543
No 172
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=27.08 E-value=6.2e+02 Score=24.99 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.8
Q ss_pred EEEEecCCcEEEccCCC-ccee--cCC---cceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCcc
Q 017748 177 AVFSLRVNSWRRIQDFP-YFWV--TGT---CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIV 244 (366)
Q Consensus 177 ~vyss~t~~W~~~~~~~-~~~~--~~~---~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~ 244 (366)
.+-.....+|+.+...+ .... ... =+|.-||.+++.. .|-.+|+.-+.|..|+-|...
T Consensus 211 s~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~----------GVsRqNp~GdsWkdI~tP~~a 274 (705)
T KOG3669|consen 211 SVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYRE----------GVSRQNPEGDSWKDIVTPRQA 274 (705)
T ss_pred cCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEe----------cccccCCCCchhhhccCcccc
Confidence 33344556898875444 1111 111 1455677777643 588899999999998888876
No 173
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.21 E-value=2.4e+02 Score=25.47 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=40.0
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeec
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFD 267 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~ 267 (366)
.++-..+|.+|.+.... ..+..+|++++++..+ .+|...+ -|+-. |.+.++....
T Consensus 206 hSPRWhdgrLwvldsgt------Gev~~vD~~~G~~e~Va~vpG~~r------GL~f~-G~llvVgmSk 261 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGR------GELGYVDPQAGKFQPVAFLPGFTR------GLAFA-GDFAFVGLSK 261 (335)
T ss_pred cCCcEeCCeEEEEECCC------CEEEEEcCCCCcEEEEEECCCCCc------cccee-CCEEEEEecc
Confidence 34677889998887655 4899999999999888 8887541 12333 8888877754
No 174
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=26.09 E-value=8.8e+02 Score=26.41 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|+.|.-.-.+-....+|.... ....-.|... ++. |.++...... ..+.+|...+| .|-++..+....-.
T Consensus 267 ~IvffErNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~Ny----hWYLKq~l~~~~~~ 338 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLD-EKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNY----HWYLKQELQFSQKA 338 (1265)
T ss_pred cEEEEecCCccccccccCCccc-ccchheeeecCCCCceeeeeccccc---ceEEEEEecCe----EEEEEEEEeccccc
Confidence 5777877666665554444331 1112233333 333 4443333322 15999999996 49998877653320
Q ss_pred --eeeEEEEecCCcEEEEEeeCCeEEEEeCC----C--CeEEEeeeecCcccCeeeeeEEecCcccCC
Q 017748 302 --NVKPLVYSRSEDKVLLHAVRGDLCWYDLE----R--HRVRSIVEIDDKVRRCDMRTVCVNTLVSPN 361 (366)
Q Consensus 302 --~~~~~~~~~~g~~i~~~~~~~~~~~yd~~----t--~~~~~v~~~~~~~~~~~~~~~y~~sl~~~~ 361 (366)
.++|. .. ..+.+-..+++.++||.. . +....++.|.| ....+.++-+++|||+
T Consensus 339 ~~~W~p~---~~-~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDg---s~llvT~ls~~vvPPP 399 (1265)
T KOG1920|consen 339 LLMWDPV---TE-KTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDG---SRLLVTPLSLAVVPPP 399 (1265)
T ss_pred cccccCC---Cc-eeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeC---CEEEEecchhhcCCCC
Confidence 02221 11 133333344444444332 2 11223334555 5566666667777664
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=26.05 E-value=2.5e+02 Score=25.30 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=26.2
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEeeCCeEEEEeCCC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~yd~~t 331 (366)
.+.||.+++.....-=..+..++... ..-+.+.++-. .|+.+..+.++++|-+..
T Consensus 109 ~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 109 SIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred eEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 89999999874322111122233221 22233333332 333345555677776543
No 176
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.00 E-value=4e+02 Score=22.48 Aligned_cols=34 Identities=9% Similarity=-0.103 Sum_probs=23.5
Q ss_pred CCceEEEeeeceeEEeecCCccEEEEEecccccee
Q 017748 97 CKFGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHR 131 (366)
Q Consensus 97 ~~~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~ 131 (366)
+.....+.+++..++.-+....++ |||-.+++..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~-vWnl~~~k~~ 45 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLY-VWNLKKGKAV 45 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEE-EEECCCCeec
Confidence 344556777777765555677899 9997776653
No 177
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=25.91 E-value=4.3e+02 Score=25.08 Aligned_cols=53 Identities=21% Similarity=0.023 Sum_probs=30.0
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCC----c-eeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGG----G-NVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~----~-~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
--+|.........+|+.+.++.--.. + -....++.++-+...++-.-.+|+.|
T Consensus 478 allW~~~~s~~~~~~~H~atl~AfGYVQASK~~rkf~~CsPn~syaaice~~rrVlvY 535 (596)
T KOG4379|consen 478 ALLWLQMYSPSRPSVRHEATLHAFGYVQASKVVRKFTVCSPNLSYAAICEPVRRVLVY 535 (596)
T ss_pred hhhccccccCCCcchhhheehhheeeEeeeeeeeeeeeeCCCcceeeeeccceEEEEE
Confidence 34788877666678988877764221 0 12233444554445555444557777
No 178
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.78 E-value=5.9e+02 Score=24.29 Aligned_cols=141 Identities=13% Similarity=0.207 Sum_probs=75.8
Q ss_pred ccEEEEEEecCC--cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCc
Q 017748 173 YTEVAVFSLRVN--SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGY 249 (366)
Q Consensus 173 ~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~ 249 (366)
...+.|++...+ .=+++.+.+.... .-...-+|.+..-+..+ ..|-..|+++.+... +......
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~--~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~----- 290 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVT--SVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDG----- 290 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceE--EEEecCCCCEEEEecCC------CcEEEEeccCCeEEEeeeccCCc-----
Confidence 667888888433 3344443332221 10112335444444433 378899999844432 2333221
Q ss_pred eEEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE--EEEeccCCCc-eeeEEEEecCCcEEEEEeeCCeEE
Q 017748 250 YILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK--LATLLNVGGG-NVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 250 ~~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
...+.. -+|.+.+....+. .+.||-+.. |.+ +..+...... ...-+.+.++++.++....+..+.
T Consensus 291 is~~~f~~d~~~l~s~s~d~-----~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDG-----TIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred eEEEEECCCCCEEEEcCCCc-----cEEEEECCC------CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 112222 2566666665444 899998876 332 1222221111 145566778886777777777799
Q ss_pred EEeCCCCeEEEe
Q 017748 326 WYDLERHRVRSI 337 (366)
Q Consensus 326 ~yd~~t~~~~~v 337 (366)
.||+.+.+....
T Consensus 360 ~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 360 LWDLRSGKSVGT 371 (456)
T ss_pred EEEccCCcceee
Confidence 999997766544
No 179
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.38 E-value=4.2e+02 Score=22.41 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=31.0
Q ss_pred EEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecCcccC-eeeeeEEecCcc
Q 017748 306 LVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDDKVRR-CDMRTVCVNTLV 358 (366)
Q Consensus 306 ~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~-~~~~~~y~~sl~ 358 (366)
..+..+| ..++...++..|.||.+-+.|.+| ... ++....|..++.
T Consensus 72 ~~lt~~G-~PiV~lsng~~y~y~~~L~~W~~v------sd~w~~~~S~~~~~~~ 118 (219)
T PF07569_consen 72 CSLTSNG-VPIVTLSNGDSYSYSPDLGCWIRV------SDSWWAIGSQYWDSLP 118 (219)
T ss_pred EEEcCCC-CEEEEEeCCCEEEeccccceeEEe------ccchhhhhcccccccC
Confidence 3445566 666666666799999999999999 222 455555555554
No 180
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.14 E-value=1.8e+02 Score=29.31 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=43.9
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
..++||-+.+... .-|..+.. + ..-+++.++|...++.+-.+.+..|+.+..+++.-..|
T Consensus 432 ~KvRiWsI~d~~V-v~W~Dl~~-----l--ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 432 GKVRLWSISDKKV-VDWNDLRD-----L--ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred cceEEeecCcCee-Eeehhhhh-----h--heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 3789998877543 33766552 2 55577778887788888788899999999999755455
No 181
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=25.12 E-value=1.4e+02 Score=20.28 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=4.2
Q ss_pred eccccceeec
Q 017748 124 NPLTKRHRVL 133 (366)
Q Consensus 124 NP~t~~~~~L 133 (366)
+|-||+.+++
T Consensus 35 DPETGqYVeV 44 (75)
T PF15232_consen 35 DPETGQYVEV 44 (75)
T ss_pred cCCCCcEEEE
Confidence 4444444433
No 182
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=24.84 E-value=2.5e+02 Score=27.54 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=43.4
Q ss_pred EEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCC---CCCC--CcceEEEeeecCCCCeEEEEEEEEcCCCCccE
Q 017748 101 FIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRD---LSRC--VPSLEGFGFDVGSGDFKLVKILAFGKPMNYTE 175 (366)
Q Consensus 101 ~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~---~~~~--~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~ 175 (366)
.-+..+|||+++......+- .|+|-+++....-..... ++.. ..+..++.|... .-.|-+. .....
T Consensus 181 v~in~~hgLla~Gt~~g~VE-fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVG------ts~G~ 251 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVE-FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVG------TSTGS 251 (703)
T ss_pred eeecCccceEEecccCceEE-EecchhhhhheeeecccccCCCccccccCcceEEEecCC--ceeEEee------ccCCc
Confidence 34567899999887666666 999999986543221111 1110 223445555432 1222221 12456
Q ss_pred EEEEEecCCcE
Q 017748 176 VAVFSLRVNSW 186 (366)
Q Consensus 176 ~~vyss~t~~W 186 (366)
+.||++++.+=
T Consensus 252 v~iyDLRa~~p 262 (703)
T KOG2321|consen 252 VLIYDLRASKP 262 (703)
T ss_pred EEEEEcccCCc
Confidence 88999987654
No 183
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.34 E-value=2.4e+02 Score=26.37 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred EEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 254 EALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 254 ~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+.+-+...++++..+. .+..|-++... .+.|+-+.. .....+++..+|..++....+.++..|+.++..
T Consensus 319 ~W~pDg~~~V~Gs~dr----~i~~wdlDgn~-~~~W~gvr~------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSPDR----TIIMWDLDGNI-LGNWEGVRD------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred EEccCCceeEecCCCC----cEEEecCCcch-hhccccccc------ceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3333334444443332 88899998764 356887654 125556667777667777666667777777655
Q ss_pred EE
Q 017748 334 VR 335 (366)
Q Consensus 334 ~~ 335 (366)
=+
T Consensus 388 dr 389 (519)
T KOG0293|consen 388 DR 389 (519)
T ss_pred hh
Confidence 43
No 184
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.32 E-value=2.8e+02 Score=24.94 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=36.1
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+.||.|.+- =+.+.+|-.... ..-+++...+..|-+-++..++-.||+..+++-++
T Consensus 378 rTvKvWdLrNM-----RsplATIRtdS~--~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 378 RTVKVWDLRNM-----RSPLATIRTDSP--ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred ceEEEeeeccc-----cCcceeeecCCc--cceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 37888888763 122444443322 33345555443455556667799999999998877
No 185
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.88 E-value=5.8e+02 Score=23.57 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCccEEEEEeccccce-eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCC
Q 017748 115 SRRNIMLLLNPLTKRH-RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
....+. |.+..|++. .++|.... ....+.+.+ .++|-.+. .. ...+.+++..++. .+...+
T Consensus 14 ~~~~v~-viD~~t~~~~~~i~~~~~-------~h~~~~~s~-Dgr~~yv~-~r------dg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 14 GSGSVA-VIDGATNKVVARIPTGGA-------PHAGLKFSP-DGRYLYVA-NR------DGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GGTEEE-EEETTT-SEEEEEE-STT-------EEEEEE-TT--SSEEEEE-ET------TSEEEEEETTSSS--EEEEEE
T ss_pred CCCEEE-EEECCCCeEEEEEcCCCC-------ceeEEEecC-CCCEEEEE-cC------CCeEEEEECCccc--EEEEEe
Confidence 456677 889888764 55554321 111222322 24554443 21 3468888888766 232222
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce-eeeeCCCCccC--CCCceEEEEEECC-eEEEEEeecCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE-FYQVPLPPIVG--IEGYYILLEALGG-CLCLLCKFDDD 269 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i~lP~~~~--~~~~~~~l~~~~g-~L~l~~~~~~~ 269 (366)
.+.....-.+.-+|..-+.+.... ..+..+|.++.+ ...|+...... .......+....+ ..+++...+
T Consensus 76 ~G~~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-- 148 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-- 148 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred cCCCcceEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence 221111113345788776665543 379999998754 45554432210 1112233444444 445555543
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEeeee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
.-+||+++-..... .+...+..... .+-.++..+|..++.. ...+++.+.|.++++.....+.
T Consensus 149 ----~~~I~vVdy~d~~~--~~~~~i~~g~~--~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 149 ----TGEIWVVDYSDPKN--LKVTTIKVGRF--PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp ----TTEEEEEETTTSSC--EEEEEEE--TT--EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ----CCeEEEEEeccccc--cceeeeccccc--ccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 34789887433222 12334554443 6667777777455553 3455799999999988765454
No 186
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=23.75 E-value=7.4e+02 Score=24.76 Aligned_cols=176 Identities=17% Similarity=0.182 Sum_probs=81.6
Q ss_pred cCCCceEEEeeeceeEEeec----CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCe-EEEEEEEEc-
Q 017748 95 KNCKFGFIIGSCNGLLALED----SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDF-KLVKILAFG- 168 (366)
Q Consensus 95 ~~~~~~~~~~s~~Gll~~~~----~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~y-kvv~~~~~~- 168 (366)
+......+.|..+|-+++.+ ..+.+..+||=+++....-|.+..+...+.... .+-....-.| .|+.+....
T Consensus 154 ~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~--kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 154 PTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW--KAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred cCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc--ccccCceeeeeEEEEEeccce
Confidence 33445567888899988886 111222278888888887664433332211100 0100111112 233322110
Q ss_pred ---CCCCccEEEEEEecCCcE--E----EccCCCccee--cCCcceEEC--CcEEEEEeeCCCCCCCcEEEEEECCCcee
Q 017748 169 ---KPMNYTEVAVFSLRVNSW--R----RIQDFPYFWV--TGTCSVFVN--GALHWTAALNQDADRNDIIIAFDLKSEEF 235 (366)
Q Consensus 169 ---~~~~~~~~~vyss~t~~W--~----~~~~~~~~~~--~~~~~v~~~--G~lYw~~~~~~~~~~~~~i~~fD~~~~~~ 235 (366)
.+.....+.|+|++...= + .....+..-. .......+| |.--+....+ ..|+.||+.++.-
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD------~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD------NSIYFYNMRSLSI 305 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC------CcEEEEeccccCc
Confidence 012356778888876432 1 1111222211 111122233 2333333333 3799999999887
Q ss_pred eeeCCCCccCCCCceEEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 236 YQVPLPPIVGIEGYYILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 236 ~~i~lP~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+.+..-.+.....+...-.. -+|+-++-+..+. +--||.+...
T Consensus 306 sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~-----~ayiw~vs~~ 349 (720)
T KOG0321|consen 306 SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE-----QAYIWVVSSP 349 (720)
T ss_pred CchhhccCcccceeeeeeecCCCCceEeccCCCc-----ceeeeeecCc
Confidence 77644333211222222222 2444444333333 7889998864
No 187
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.67 E-value=80 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=24.6
Q ss_pred CceEEEeeeceeEEeec----CCccEEEEEeccccceee
Q 017748 98 KFGFIIGSCNGLLALED----SRRNIMLLLNPLTKRHRV 132 (366)
Q Consensus 98 ~~~~~~~s~~Gll~~~~----~~~~~~~V~NP~t~~~~~ 132 (366)
..+.++.+.+||++-.. ....+.=+|+|+|++.++
T Consensus 32 ~~ikVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~Re 70 (94)
T PRK13259 32 HDIRVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTRE 70 (94)
T ss_pred eeeEEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHHH
Confidence 45678888899887654 223455599999988654
No 188
>PF15408 PH_7: Pleckstrin homology domain
Probab=23.64 E-value=24 Score=24.55 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.6
Q ss_pred ceeeeccchhhhhhcCChhHHH
Q 017748 24 LARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 24 l~r~r~VcK~W~~li~s~~F~~ 45 (366)
....+-|||+|-.+..+|+|.-
T Consensus 79 FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 79 FASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhHHHHHHHHHHHhcChhhhh
Confidence 4445679999999999998853
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=23.45 E-value=6.3e+02 Score=23.79 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=72.5
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeC-CCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVP-LPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~ 250 (366)
...+.+++..++.-+.+...+... ......-+|. +++...... . ..|..+|+.+.+...+. -+... ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~--~~~~~SpDG~~l~~~~s~~g-~---~~Iy~~d~~~g~~~~lt~~~~~~----~~ 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN--GAPSFSPDGRRLALTLSRDG-N---PEIYVMDLGSRQLTRLTNHFGID----TE 296 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc--cCceECCCCCEEEEEEeCCC-C---ceEEEEECCCCCeEECccCCCCc----cc
Confidence 345667777777666554332111 1111223453 444433221 1 36899999887765442 11111 11
Q ss_pred EEEEEECCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEE
Q 017748 251 ILLEALGGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCW 326 (366)
Q Consensus 251 ~~l~~~~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~ 326 (366)
+... -+|+ |++...... ..+||.++-.+ ++..++. ... . ......+..+|+.|++...++ .++.
T Consensus 297 ~~~s-pDG~~l~f~sd~~g-----~~~iy~~dl~~--g~~~~lt-~~g-~--~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 297 PTWA-PDGKSIYFTSDRGG-----RPQIYRVAASG--GSAERLT-FQG-N--YNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred eEEC-CCCCEEEEEECCCC-----CceEEEEECCC--CCeEEee-cCC-C--CccCEEECCCCCEEEEEECCCCceeEEE
Confidence 2221 1454 444332222 46788876432 3344332 111 1 122345667887887765432 5999
Q ss_pred EeCCCCeEEEe
Q 017748 327 YDLERHRVRSI 337 (366)
Q Consensus 327 yd~~t~~~~~v 337 (366)
+|+.+++.+.+
T Consensus 365 ~d~~~g~~~~L 375 (433)
T PRK04922 365 MDLSTGSVRTL 375 (433)
T ss_pred EECCCCCeEEC
Confidence 99999998876
No 190
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.27 E-value=4.3e+02 Score=21.81 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=48.2
Q ss_pred EEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCC
Q 017748 224 IIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGG 300 (366)
Q Consensus 224 ~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~ 300 (366)
.+..||+.+.+. ..+..+.. ....+... +|+..+++..+. .+.+|.+... ..+..+ ....
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~------~~~~~~~~~~~- 220 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTG-----EVNSVAFSPDGEKLLSSSSDG-----TIKLWDLSTG------KCLGTLRGHEN- 220 (289)
T ss_pred cEEEEEccccccceeEecCcc-----ccceEEECCCcCEEEEecCCC-----cEEEEECCCC------ceecchhhcCC-
Confidence 688899875433 22232211 11223333 343444444333 7999987652 112222 1111
Q ss_pred ceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 301 GNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
...-+.+..++ .+++... ++.+..||.++++....
T Consensus 221 -~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 221 -GVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred -ceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEE
Confidence 13334455555 5555554 67799999997665443
No 191
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=23.17 E-value=7e+02 Score=24.21 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=32.7
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+.+|. + .+-.|+++..=+ ..-.++++.| .|.+....++.++.|.++..+-.+
T Consensus 390 k~v~lW~--~--~k~~wt~~~~d~------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 390 KHVRLWN--D--HKLEWTKIIEDP------AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred ceEEEcc--C--CceeEEEEecCc------eeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 3566665 1 234576643222 3345666667 666667677788888888766555
No 192
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=23.07 E-value=1.6e+02 Score=21.95 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+++....+.|++||++++.+-.+
T Consensus 83 ~vvl~~~~G~Vy~yd~~~~~l~~l 106 (125)
T PF02393_consen 83 LVVLVGESGRVYAYDPEDDRLYRL 106 (125)
T ss_pred EEEEEeCCCeEEEEEcCCCEEEEE
Confidence 566667778899999999887777
No 193
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.03 E-value=7.8e+02 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=15.7
Q ss_pred eceeEEeecCCccEEEEEeccccceee
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRV 132 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~ 132 (366)
..|.+...++...+- +||+.++....
T Consensus 214 rd~tI~sgDS~G~V~-FWd~~~gTLiq 239 (691)
T KOG2048|consen 214 RDSTIASGDSAGTVT-FWDSIFGTLIQ 239 (691)
T ss_pred ecCcEEEecCCceEE-EEcccCcchhh
Confidence 455555454555667 78887776543
No 194
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.19 E-value=4.3e+02 Score=22.96 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=30.9
Q ss_pred CceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE-EeeeecC
Q 017748 287 DSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR-SIVEIDD 342 (366)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~-~v~~~~~ 342 (366)
....+.+.++....|.-+ +.-+| .+++... ...++.||+++++.. +. .+++
T Consensus 57 ~~~~~~~~Lp~~~~GtG~---vVYng-slYY~~~~s~~IvkydL~t~~v~~~~-~L~~ 109 (250)
T PF02191_consen 57 GRSSRTYKLPYPWQGTGH---VVYNG-SLYYNKYNSRNIVKYDLTTRSVVARR-ELPG 109 (250)
T ss_pred CCCceEEEEeceeccCCe---EEECC-cEEEEecCCceEEEEECcCCcEEEEE-ECCc
Confidence 345666666643211111 11244 6666654 346999999999999 66 7765
No 195
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.08 E-value=3e+02 Score=23.64 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=36.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeec--CCcCCCCCCCCcceEEEeeecCCCCeEEEE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVL--PTFYRDLSRCVPSLEGFGFDVGSGDFKLVK 163 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~L--P~~~~~~~~~~~~~~~lg~d~~~~~ykvv~ 163 (366)
+|.|.-.....++| -.||.|+.-..+ .++..... -..+++-|+|.-++-+||.
T Consensus 38 ~G~LYgl~~~g~lY-tIn~~tG~aT~vg~s~~~~al~---g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 38 NGQLYGLGSTGRLY-TINPATGAATPVGASPLTVALS---GTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCEEEEeCCCcEE-EEECCCCeEEEeeccccccccc---CceEEEecCcccCcEEEEc
Confidence 55554444567899 999999997776 33333222 2467788889888777775
No 196
>PTZ00421 coronin; Provisional
Probab=22.07 E-value=7.3e+02 Score=24.07 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCcc--CCCCceEEEEEEC---CeEEEEEeecCCCCCCcEEEEEe
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIV--GIEGYYILLEALG---GCLCLLCKFDDDDDDRPWDLWVM 280 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~--~~~~~~~~l~~~~---g~L~l~~~~~~~~~~~~l~iW~l 280 (366)
+|.+...+..+ ..|..+|+.++........... ..+...+..+... +.+.+.+..+. .+.||-+
T Consensus 87 d~~~LaSgS~D------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg-----tVrIWDl 155 (493)
T PTZ00421 87 DPQKLFTASED------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM-----VVNVWDV 155 (493)
T ss_pred CCCEEEEEeCC------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC-----EEEEEEC
Q ss_pred ccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 281 KEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 281 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+. -..+..+.... ....-+.+..+|..++....++.+..||+++++
T Consensus 156 ~t------g~~~~~l~~h~-~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 156 ER------GKAVEVIKCHS-DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CC------CeEEEEEcCCC-CceEEEEEECCCCEEEEecCCCEEEEEECCCCc
No 197
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.93 E-value=2e+02 Score=26.28 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=54.5
Q ss_pred cEEEEEECCCceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEE-eccCCC
Q 017748 223 DIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLAT-LLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~-i~~~~~ 300 (366)
..|-+||.++.+... ++-... ....+..-+-..+++....+. .+.+|.++... ..+.. +....
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~-----sv~di~~~a~Gk~l~tcSsDl----~~~LWd~~~~~-----~c~ks~~gh~h- 194 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTD-----SVFDISFDASGKYLATCSSDL----SAKLWDFDTFF-----RCIKSLIGHEH- 194 (406)
T ss_pred ceEEEEEccchhhhhhhhcccc-----ceeEEEEecCccEEEecCCcc----chhheeHHHHH-----HHHHHhcCccc-
Confidence 479999999988822 122221 123344444335555555543 58889988631 01111 12221
Q ss_pred ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 301 GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
...-+++.+.|+.|+-++.|..+..+|..|+-
T Consensus 195 -~vS~V~f~P~gd~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 195 -GVSSVFFLPLGDHILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred -ceeeEEEEecCCeeeecccccceeEEecccce
Confidence 24445566667778888877778888888775
No 198
>PRK00178 tolB translocation protein TolB; Provisional
Probab=21.74 E-value=6.7e+02 Score=23.46 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=94.0
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..++ ++|..|++...|...... .. ...+.|. +++-++... . .....+.+++..++..+.+..-+..
T Consensus 223 ~~l~-~~~l~~g~~~~l~~~~g~-----~~--~~~~SpD-G~~la~~~~--~--~g~~~Iy~~d~~~~~~~~lt~~~~~- 288 (430)
T PRK00178 223 PRIF-VQNLDTGRREQITNFEGL-----NG--APAWSPD-GSKLAFVLS--K--DGNPEIYVMDLASRQLSRVTNHPAI- 288 (430)
T ss_pred CEEE-EEECCCCCEEEccCCCCC-----cC--CeEECCC-CCEEEEEEc--c--CCCceEEEEECCCCCeEEcccCCCC-
Confidence 4688 899999888777543311 11 2333333 222222221 1 1235678889988888776532211
Q ss_pred ecCCcceE-ECC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 197 VTGTCSVF-VNG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 197 ~~~~~~v~-~~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
...+.+ -+| .+++....... ..|..+|+.+.+...+...... ........-+..|++...... .
T Consensus 289 --~~~~~~spDg~~i~f~s~~~g~----~~iy~~d~~~g~~~~lt~~~~~---~~~~~~Spdg~~i~~~~~~~~-----~ 354 (430)
T PRK00178 289 --DTEPFWGKDGRTLYFTSDRGGK----PQIYKVNVNGGRAERVTFVGNY---NARPRLSADGKTLVMVHRQDG-----N 354 (430)
T ss_pred --cCCeEECCCCCEEEEEECCCCC----ceEEEEECCCCCEEEeecCCCC---ccceEECCCCCEEEEEEccCC-----c
Confidence 111122 245 45665433211 3688899988777665332211 012222222344544443222 5
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v 337 (366)
..||.++-.. +....+..-. .. ..| .+..+|..|++.... .+++..+...+.-+.+
T Consensus 355 ~~l~~~dl~t--g~~~~lt~~~--~~--~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 355 FHVAAQDLQR--GSVRILTDTS--LD--ESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred eEEEEEECCC--CCEEEccCCC--CC--CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 6677776432 2233322111 11 233 566788777777543 2488888876655555
No 199
>PTZ00420 coronin; Provisional
Probab=21.62 E-value=8e+02 Score=24.36 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=78.2
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc-EEEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS-WRRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~ 223 (366)
...+.++|. +.+.++.... ...+.+++.+++. -..+. .+... .++. -+|.+...+..+ .
T Consensus 128 V~sVaf~P~-g~~iLaSgS~------DgtIrIWDl~tg~~~~~i~-~~~~V----~SlswspdG~lLat~s~D------~ 189 (568)
T PTZ00420 128 ISIIDWNPM-NYYIMCSSGF------DSFVNIWDIENEKRAFQIN-MPKKL----SSLKWNIKGNLLSGTCVG------K 189 (568)
T ss_pred EEEEEECCC-CCeEEEEEeC------CCeEEEEECCCCcEEEEEe-cCCcE----EEEEECCCCCEEEEEecC------C
Confidence 445666664 3333333221 3467888887653 11111 11111 1222 256655444333 3
Q ss_pred EEEEEECCCceee-eeCCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 224 IIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 224 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
.|..+|+.+++-. .+..+... .......+.. .++...+.++.+. ...+.+.||-+...+ +=.....++...
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~-~~s~~v~~~~fs~d~~~IlTtG~d~-~~~R~VkLWDlr~~~---~pl~~~~ld~~~- 263 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGG-KNTKNIWIDGLGGDDNYILSTGFSK-NNMREMKLWDLKNTT---SALVTMSIDNAS- 263 (568)
T ss_pred EEEEEECCCCcEEEEEecccCC-ceeEEEEeeeEcCCCCEEEEEEcCC-CCccEEEEEECCCCC---CceEEEEecCCc-
Confidence 7999999986542 22332221 0001111111 2344444444333 123479999988632 112222332211
Q ss_pred ceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 301 GNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
+...|.....+| .+++.. .|+.+.+|++.++....+
T Consensus 264 ~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 264 APLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred cceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEee
Confidence 112233333344 566554 566799999988876666
No 200
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=21.51 E-value=5.7e+02 Score=22.59 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=60.0
Q ss_pred EEEEEECCCceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCC-CCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGV-NDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~ 301 (366)
.+.--|+++++--. .+.|..+ ...=-..+|.++++......+....+.+..+.+... ..+=+....|+...-
T Consensus 75 t~kLWDv~tGk~la~~k~~~~V-----k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s- 148 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPV-----KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS- 148 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCee-----EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-
Confidence 67778888876533 3555554 111122367888877766544455677777765421 111222444543221
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
..........++.|+-.+.++.+-.||.++++
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 12223333455578888888899999999974
No 201
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=21.50 E-value=5.7e+02 Score=22.59 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=78.8
Q ss_pred ccEEEEEEec-CCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCccCC
Q 017748 173 YTEVAVFSLR-VNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIVGI 246 (366)
Q Consensus 173 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~ 246 (366)
...+.+++.. .++|.....+.-.....-++|.. .|. |-.+.+-+ ..+..+--+..+|..+ +-|..
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD-----~t~~Iw~k~~~efecv~~lEGHEn--- 106 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFD-----ATVVIWKKEDGEFECVATLEGHEN--- 106 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeecc-----ceEEEeecCCCceeEEeeeecccc---
Confidence 4567778776 67887654333222212223333 344 22222221 2344444455566554 22222
Q ss_pred CCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEE
Q 017748 247 EGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 247 ~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
.--.++-. +|.+...+.++. .+-||+.++. ++-+-...+..-. +....+..++..+.++-+..++.+-
T Consensus 107 --EVK~Vaws~sG~~LATCSRDK-----SVWiWe~ded---dEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 107 --EVKCVAWSASGNYLATCSRDK-----SVWIWEIDED---DEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred --ceeEEEEcCCCCEEEEeeCCC-----eEEEEEecCC---CcEEEEeeecccc-ccccEEEEcCCcceeEEeccCCeEE
Confidence 12223333 354444444443 7888888753 3345455554311 2244556666665666677777777
Q ss_pred EEeCC-CCeEEEeeeecC
Q 017748 326 WYDLE-RHRVRSIVEIDD 342 (366)
Q Consensus 326 ~yd~~-t~~~~~v~~~~~ 342 (366)
+|.-+ .+.|+-+..++|
T Consensus 176 ~~~~~~dddW~c~~tl~g 193 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDG 193 (312)
T ss_pred EEeecCCCCeeEEEEecC
Confidence 77777 888888877776
No 202
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.83 E-value=5.4e+02 Score=24.92 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=56.6
Q ss_pred cEEEEEECCCc--eeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSE--EFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..|-+.|+... ++-.-+|+..-.+.....+..--+|+-.+++++.. .+.||-|..-...- +..+.-..
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas-----tlsiWDLAapTpri----kaeltssa- 509 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS-----TLSIWDLAAPTPRI----KAELTSSA- 509 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc-----eeeeeeccCCCcch----hhhcCCcc-
Confidence 37888888743 22222555442121123334444788888888754 89999987632100 01111111
Q ss_pred ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 301 GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
..+--+++..+.+..|-+..++.+.+||+...++-+
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 013335566677344445667779999998887644
No 203
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.73 E-value=6e+02 Score=22.53 Aligned_cols=62 Identities=8% Similarity=0.207 Sum_probs=39.6
Q ss_pred ccEEEEEEecCCcEEEccCC-Ccc---ee-cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDF-PYF---WV-TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL 240 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~-~~~---~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l 240 (366)
-..+.+|+..+.+|.....- .-. .. ....-+++.|.+-.-+. ....+..||..+.+|..+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~------~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT------NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC------CceeEEEEecCCCeeeecCC
Confidence 56789999999999987532 111 11 12334555554443221 12589999999999988744
No 204
>PF13919 ASXH: Asx homology domain
Probab=20.28 E-value=43 Score=26.07 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCCCcHHHHHHHHccCCccccee--------------------eeccchhhhhhcCChhHHHH
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLAR--------------------FRCVSRSFRSLIDGQDFVNR 46 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r--------------------~r~VcK~W~~li~s~~F~~~ 46 (366)
.+..||.+=-.+||..||..+... |+..|..|+..+.+-.|-..
T Consensus 43 tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~pe 106 (138)
T PF13919_consen 43 TWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFDPE 106 (138)
T ss_pred HHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCChH
Confidence 467899999999999999765422 55666777776665555433
No 205
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.19 E-value=1e+03 Score=25.10 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=18.6
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+++.. +..+..||+.|.+=..++.+.
T Consensus 333 ~LfYvk-d~~i~~~d~~t~~d~~v~~lr 359 (1202)
T KOG0292|consen 333 GLFYVK-DRFIRSYDLRTQKDTAVASLR 359 (1202)
T ss_pred EEEEEc-cceEEeeeccccccceeEecc
Confidence 566666 556999999987655554554
Done!