Query 017748
Match_columns 366
No_of_seqs 149 out of 1606
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2woz_A Kelch repeat and BTB do 99.6 2.9E-12 9.8E-17 114.7 25.7 196 119-337 80-293 (318)
2 3ii7_A Kelch-like protein 7; p 99.6 2E-12 7E-17 115.0 24.6 217 102-341 50-282 (306)
3 2xn4_A Kelch-like protein 2; s 99.5 4E-12 1.4E-16 112.8 26.3 211 104-337 58-282 (302)
4 1zgk_A Kelch-like ECH-associat 99.5 3E-12 1E-16 114.1 25.5 201 117-341 90-297 (308)
5 4asc_A Kelch repeat and BTB do 99.5 2.2E-12 7.5E-17 115.3 24.2 196 119-337 69-283 (315)
6 2vpj_A Kelch-like protein 12; 99.5 3.8E-12 1.3E-16 112.9 25.5 201 117-341 78-288 (301)
7 3ii7_A Kelch-like protein 7; p 99.5 6.1E-12 2.1E-16 111.9 23.5 200 116-337 23-231 (306)
8 2vpj_A Kelch-like protein 12; 99.5 2.3E-11 7.9E-16 107.8 23.1 198 117-338 31-238 (301)
9 2xn4_A Kelch-like protein 2; s 99.4 1.7E-11 5.8E-16 108.8 21.9 199 117-337 30-235 (302)
10 1zgk_A Kelch-like ECH-associat 99.4 2.1E-11 7.1E-16 108.6 19.4 197 117-337 39-246 (308)
11 4asc_A Kelch repeat and BTB do 99.4 9.4E-11 3.2E-15 104.6 23.7 203 117-338 13-228 (315)
12 2uvk_A YJHT; unknown function, 99.3 3.1E-11 1E-15 109.8 17.4 223 102-341 14-304 (357)
13 2woz_A Kelch repeat and BTB do 99.3 3.7E-10 1.3E-14 100.9 23.7 202 118-340 25-240 (318)
14 2uvk_A YJHT; unknown function, 99.2 1.5E-09 5E-14 98.6 21.1 156 174-337 168-348 (357)
15 2zwa_A Leucine carboxyl methyl 99.2 1.4E-09 4.9E-14 107.3 19.7 203 117-341 412-644 (695)
16 2e31_A FBS1, F-box only protei 99.2 1.2E-11 4.1E-16 107.1 3.4 51 1-51 48-99 (297)
17 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 8.1E-12 2.8E-16 79.8 1.7 44 2-45 7-50 (53)
18 2ovr_B FBW7, F-BOX/WD repeat p 99.1 2.3E-07 7.9E-12 86.5 30.2 285 2-337 17-314 (445)
19 3v7d_B Cell division control p 99.0 1.8E-06 6.1E-11 80.7 32.2 44 4-47 15-59 (464)
20 1p22_A F-BOX/WD-repeat protein 98.9 7.4E-08 2.5E-12 89.7 18.6 288 4-336 11-330 (435)
21 1k3i_A Galactose oxidase precu 98.8 7.2E-08 2.5E-12 94.8 14.8 203 118-337 220-503 (656)
22 2zwa_A Leucine carboxyl methyl 98.7 2.2E-07 7.7E-12 91.7 16.4 152 172-337 410-589 (695)
23 1k3i_A Galactose oxidase precu 98.4 1.6E-06 5.6E-11 85.1 13.1 194 122-337 170-384 (656)
24 3l2o_B F-box only protein 4; s 98.1 6.5E-07 2.2E-11 76.7 1.2 51 3-53 4-54 (312)
25 2ast_B S-phase kinase-associat 97.7 1.2E-05 4E-10 72.0 1.7 42 2-43 7-48 (336)
26 2p1m_B Transport inhibitor res 97.0 0.00014 4.8E-09 70.2 0.8 35 3-37 5-40 (594)
27 3ei3_B DNA damage-binding prot 96.7 0.3 1E-05 43.5 22.2 194 109-334 88-285 (383)
28 3dsm_A Uncharacterized protein 96.7 0.28 9.7E-06 43.0 20.8 200 107-341 2-222 (328)
29 3ogk_B Coronatine-insensitive 96.5 0.00053 1.8E-08 66.1 0.9 34 4-37 13-47 (592)
30 3mbr_X Glutamine cyclotransfer 96.2 0.18 6E-06 42.3 14.6 119 200-341 23-143 (243)
31 3q7m_A Lipoprotein YFGL, BAMB; 96.0 0.82 2.8E-05 40.6 20.0 195 102-337 98-302 (376)
32 3jro_A Fusion protein of prote 95.5 0.87 3E-05 45.1 18.6 189 116-333 30-240 (753)
33 2iwa_A Glutamine cyclotransfer 95.5 0.35 1.2E-05 41.2 13.6 113 207-341 32-145 (266)
34 1p22_A F-BOX/WD-repeat protein 95.4 1.3 4.5E-05 40.2 18.5 191 99-333 175-367 (435)
35 3jrp_A Fusion protein of prote 95.4 1.3 4.3E-05 38.9 18.3 204 108-340 70-297 (379)
36 3jrp_A Fusion protein of prote 95.4 1.3 4.4E-05 38.8 23.5 143 173-333 78-242 (379)
37 3nol_A Glutamine cyclotransfer 95.4 0.3 1E-05 41.3 12.6 114 204-340 50-164 (262)
38 1l0q_A Surface layer protein; 95.3 1.5 5.1E-05 38.9 19.9 186 115-340 94-284 (391)
39 1gxr_A ESG1, transducin-like e 95.2 1.4 4.7E-05 37.9 22.7 186 116-337 71-261 (337)
40 1l0q_A Surface layer protein; 95.1 1.6 5.6E-05 38.6 19.0 180 115-337 10-195 (391)
41 3bws_A Protein LP49; two-domai 95.0 2 6.7E-05 38.7 22.0 194 106-337 179-396 (433)
42 4e54_B DNA damage-binding prot 94.9 0.66 2.2E-05 42.3 14.8 193 109-334 134-330 (435)
43 3dwl_C Actin-related protein 2 94.8 0.62 2.1E-05 41.2 14.0 189 115-334 31-239 (377)
44 3nok_A Glutaminyl cyclase; bet 94.7 0.41 1.4E-05 40.6 11.6 114 202-341 59-174 (268)
45 3q7m_A Lipoprotein YFGL, BAMB; 94.7 1.4 4.8E-05 39.1 16.2 119 200-340 47-171 (376)
46 3u4y_A Uncharacterized protein 94.2 2.5 8.5E-05 36.4 18.4 183 115-334 18-210 (331)
47 2z2n_A Virginiamycin B lyase; 94.1 2.3 8E-05 35.7 18.3 188 106-335 108-299 (299)
48 4aez_A CDC20, WD repeat-contai 94.0 3.2 0.00011 37.1 23.1 196 103-337 99-299 (401)
49 3scy_A Hypothetical bacterial 93.6 2.5 8.6E-05 37.0 15.4 119 206-337 221-345 (361)
50 1yfq_A Cell cycle arrest prote 93.5 3.3 0.00011 35.6 22.2 197 109-337 71-288 (342)
51 3hfq_A Uncharacterized protein 92.9 4.3 0.00015 35.2 16.2 116 206-337 50-178 (347)
52 1gxr_A ESG1, transducin-like e 92.6 4.5 0.00015 34.5 21.1 187 109-337 111-302 (337)
53 3g4e_A Regucalcin; six bladed 92.5 4.5 0.00016 34.4 24.5 199 109-341 27-239 (297)
54 3bws_A Protein LP49; two-domai 92.4 3 0.0001 37.4 14.4 114 206-337 133-249 (433)
55 3dsm_A Uncharacterized protein 92.4 5 0.00017 34.8 21.5 195 106-335 52-257 (328)
56 3sjl_D Methylamine dehydrogena 92.3 2.2 7.4E-05 38.4 12.8 124 206-342 237-374 (386)
57 1ri6_A Putative isomerase YBHE 92.3 4.9 0.00017 34.4 24.5 156 173-341 150-320 (343)
58 3v65_B Low-density lipoprotein 92.2 6.1 0.00021 35.4 19.7 190 106-335 126-322 (386)
59 1k8k_C P40, ARP2/3 complex 41 92.0 5.7 0.00019 34.5 21.6 193 115-337 28-239 (372)
60 3m0c_C LDL receptor, low-densi 91.7 11 0.00039 37.3 22.1 178 147-357 473-656 (791)
61 2pm9_A Protein WEB1, protein t 91.5 7 0.00024 34.6 15.6 198 108-334 127-340 (416)
62 1ri6_A Putative isomerase YBHE 91.5 4.9 0.00017 34.4 14.2 144 173-337 14-167 (343)
63 4g56_B MGC81050 protein; prote 91.2 7.4 0.00025 34.2 16.1 196 107-337 105-307 (357)
64 4gqb_B Methylosome protein 50; 91.2 7.3 0.00025 34.1 19.6 196 107-337 93-295 (344)
65 3odt_A Protein DOA1; ubiquitin 90.7 6.7 0.00023 32.9 20.9 100 224-342 206-307 (313)
66 3mkq_A Coatomer beta'-subunit; 90.6 14 0.00047 36.3 22.1 190 107-337 67-265 (814)
67 2ovr_B FBW7, F-BOX/WD repeat p 90.5 9.6 0.00033 34.4 25.5 193 98-337 160-354 (445)
68 4g56_B MGC81050 protein; prote 90.4 8.7 0.0003 33.7 18.6 179 115-332 159-344 (357)
69 2aq5_A Coronin-1A; WD40 repeat 90.0 9.8 0.00034 33.7 20.0 200 109-337 96-307 (402)
70 1yr2_A Prolyl oligopeptidase; 89.9 16 0.00053 35.8 20.7 145 173-337 293-447 (741)
71 3v9f_A Two-component system se 89.7 16 0.00056 35.9 21.0 194 107-337 417-617 (781)
72 4aow_A Guanine nucleotide-bind 89.5 9.2 0.00031 32.6 20.4 93 224-333 238-339 (340)
73 4gga_A P55CDC, cell division c 89.4 11 0.00039 33.6 22.5 202 101-337 109-316 (420)
74 1k8k_C P40, ARP2/3 complex 41 89.4 10 0.00034 32.9 21.7 68 257-337 213-282 (372)
75 3nol_A Glutamine cyclotransfer 89.3 8.8 0.0003 32.3 12.9 142 173-342 64-212 (262)
76 2bkl_A Prolyl endopeptidase; m 89.2 17 0.00057 35.3 21.7 192 118-337 203-403 (695)
77 1r5m_A SIR4-interacting protei 89.1 11 0.00038 33.1 18.5 189 106-330 216-424 (425)
78 1nir_A Nitrite reductase; hemo 89.0 15 0.00052 34.5 20.3 198 107-340 148-364 (543)
79 4a11_B DNA excision repair pro 89.0 11 0.00039 32.9 19.5 162 146-335 101-280 (408)
80 3vgz_A Uncharacterized protein 88.9 10 0.00036 32.5 25.4 208 103-340 96-312 (353)
81 3e5z_A Putative gluconolactona 88.8 9.8 0.00034 32.0 23.1 199 109-342 42-256 (296)
82 3v64_C Agrin; beta propeller, 88.8 12 0.0004 32.9 22.0 191 105-335 82-279 (349)
83 3v7d_B Cell division control p 88.6 14 0.00047 33.4 22.8 197 102-337 127-347 (464)
84 1nir_A Nitrite reductase; hemo 88.5 15 0.00053 34.4 15.7 119 206-335 334-462 (543)
85 1npe_A Nidogen, entactin; glyc 88.5 9.7 0.00033 31.6 22.9 194 104-337 44-244 (267)
86 3fm0_A Protein CIAO1; WDR39,SG 88.3 12 0.00041 32.5 19.2 183 115-329 36-223 (345)
87 3fm0_A Protein CIAO1; WDR39,SG 88.2 12 0.00042 32.4 21.3 152 173-342 37-192 (345)
88 2pm7_B Protein transport prote 88.2 11 0.00038 31.8 16.7 71 259-337 220-292 (297)
89 2ad6_A Methanol dehydrogenase 88.1 4.7 0.00016 38.3 11.9 122 200-340 56-194 (571)
90 4ery_A WD repeat-containing pr 88.0 11 0.00039 31.8 22.7 182 115-337 43-229 (312)
91 3lrv_A PRE-mRNA-splicing facto 88.0 12 0.00042 32.3 19.5 203 101-336 88-299 (343)
92 2mad_H Methylamine dehydrogena 88.0 9.6 0.00033 33.9 13.3 75 257-337 278-356 (373)
93 4aez_A CDC20, WD repeat-contai 88.0 14 0.00047 32.8 21.7 114 206-342 228-347 (401)
94 1n7d_A LDL receptor, low-densi 87.6 5.1 0.00017 39.2 12.0 137 174-337 475-620 (699)
95 2p4o_A Hypothetical protein; p 87.6 12 0.00042 31.8 14.8 107 206-334 42-150 (306)
96 2ojh_A Uncharacterized protein 87.6 11 0.00037 31.1 18.0 194 115-340 60-267 (297)
97 3hrp_A Uncharacterized protein 87.6 6.6 0.00023 35.4 12.1 111 206-337 141-255 (409)
98 1sq9_A Antiviral protein SKI8; 87.5 14 0.00048 32.3 19.5 99 224-333 259-397 (397)
99 4e54_B DNA damage-binding prot 87.4 16 0.00054 32.9 15.1 33 303-336 403-435 (435)
100 2oiz_A Aromatic amine dehydrog 86.9 13 0.00044 32.7 13.5 76 257-340 265-343 (361)
101 3f3f_A Nucleoporin SEH1; struc 86.4 14 0.00048 31.2 14.2 101 224-333 34-145 (351)
102 1q7f_A NHL, brain tumor CG1071 86.3 13 0.00046 30.9 22.3 201 106-340 39-246 (286)
103 3bg1_A Protein SEC13 homolog; 86.0 15 0.00053 31.3 14.4 54 274-331 190-247 (316)
104 3iuj_A Prolyl endopeptidase; h 85.6 27 0.00094 33.8 19.1 143 174-337 259-411 (693)
105 2dg1_A DRP35, lactonase; beta 85.5 12 0.00042 31.9 12.4 115 206-337 55-177 (333)
106 3jro_A Fusion protein of prote 85.2 23 0.0008 34.7 15.5 98 224-334 32-135 (753)
107 1kv9_A Type II quinohemoprotei 85.1 4.1 0.00014 39.7 9.8 123 200-340 60-196 (668)
108 4a11_B DNA excision repair pro 84.8 19 0.00066 31.4 19.8 100 224-335 268-369 (408)
109 2pm9_A Protein WEB1, protein t 84.6 17 0.00059 31.9 13.3 153 109-283 180-338 (416)
110 1yiq_A Quinohemoprotein alcoho 84.6 5.4 0.00018 38.9 10.5 122 200-339 64-200 (689)
111 3scy_A Hypothetical bacterial 84.6 19 0.00065 31.2 16.8 144 175-332 28-187 (361)
112 3dwl_C Actin-related protein 2 84.5 3.3 0.00011 36.3 8.3 142 173-332 32-178 (377)
113 3hfq_A Uncharacterized protein 84.4 19 0.00065 30.9 26.1 169 147-337 143-325 (347)
114 1kb0_A Quinohemoprotein alcoho 84.3 3.8 0.00013 40.0 9.1 122 200-340 71-208 (677)
115 3sfz_A APAF-1, apoptotic pepti 84.0 11 0.00037 39.4 13.1 186 108-335 974-1162(1249)
116 1got_B GT-beta; complex (GTP-b 83.8 20 0.0007 30.8 23.9 96 224-336 165-262 (340)
117 1sq9_A Antiviral protein SKI8; 83.7 22 0.00074 31.1 22.1 56 274-337 208-273 (397)
118 1jmx_B Amine dehydrogenase; ox 83.7 6.1 0.00021 33.9 9.6 107 206-333 10-136 (349)
119 1pby_B Quinohemoprotein amine 83.7 16 0.00056 30.8 12.4 100 224-341 220-320 (337)
120 3mmy_A MRNA export factor; mRN 83.6 20 0.00069 30.6 19.5 194 109-337 100-310 (368)
121 1pby_B Quinohemoprotein amine 83.1 18 0.00063 30.5 12.4 101 223-340 11-133 (337)
122 3g4e_A Regucalcin; six bladed 82.8 21 0.0007 30.2 13.2 101 206-331 24-139 (297)
123 3no2_A Uncharacterized protein 82.7 21 0.0007 30.1 15.4 194 108-339 6-203 (276)
124 3c75_H MADH, methylamine dehyd 82.7 13 0.00045 33.8 11.5 75 257-337 330-408 (426)
125 2ynn_A Coatomer subunit beta'; 82.6 21 0.00072 30.1 21.5 190 108-339 68-267 (304)
126 1flg_A Protein (quinoprotein e 82.5 20 0.00068 34.1 13.2 123 200-337 62-199 (582)
127 2vdu_B TRNA (guanine-N(7)-)-me 82.3 28 0.00096 31.3 21.0 102 224-339 172-279 (450)
128 3vgz_A Uncharacterized protein 81.9 23 0.0008 30.2 22.0 189 116-340 68-271 (353)
129 3mkq_A Coatomer beta'-subunit; 81.9 40 0.0014 32.9 20.6 179 116-336 34-222 (814)
130 3bg1_A Protein SEC13 homolog; 81.7 23 0.0008 30.1 18.3 75 259-341 229-304 (316)
131 3odt_A Protein DOA1; ubiquitin 81.5 22 0.00075 29.6 23.0 191 107-337 29-220 (313)
132 3zwl_B Eukaryotic translation 81.4 25 0.00084 30.1 22.0 72 257-339 186-257 (369)
133 3ow8_A WD repeat-containing pr 80.9 26 0.00088 30.0 20.1 181 114-337 99-285 (321)
134 3mbr_X Glutamine cyclotransfer 80.5 23 0.0008 29.3 17.8 143 173-342 42-190 (243)
135 3p5b_L Low density lipoprotein 80.5 32 0.0011 30.8 22.3 179 146-357 160-344 (400)
136 2ojh_A Uncharacterized protein 80.4 23 0.00077 29.0 20.6 186 116-337 21-212 (297)
137 1r5m_A SIR4-interacting protei 80.3 29 0.001 30.3 22.9 189 109-337 122-325 (425)
138 3vl1_A 26S proteasome regulato 80.3 30 0.001 30.4 25.7 189 107-333 109-324 (420)
139 2pm7_B Protein transport prote 80.1 26 0.00087 29.5 19.2 67 258-332 170-239 (297)
140 3i2n_A WD repeat-containing pr 79.6 28 0.00095 29.6 22.1 200 109-333 131-355 (357)
141 3k26_A Polycomb protein EED; W 79.5 28 0.00097 29.7 20.9 67 258-331 299-366 (366)
142 3e5z_A Putative gluconolactona 79.3 20 0.00068 30.0 11.1 109 206-337 38-167 (296)
143 3vu4_A KMHSV2; beta-propeller 79.0 32 0.0011 29.9 18.7 66 257-333 206-273 (355)
144 2hqs_A Protein TOLB; TOLB, PAL 78.8 36 0.0012 30.4 21.7 185 117-337 159-350 (415)
145 3nok_A Glutaminyl cyclase; bet 78.5 29 0.001 29.2 13.0 137 176-341 77-220 (268)
146 2aq5_A Coronin-1A; WD40 repeat 78.2 35 0.0012 30.0 19.0 186 115-333 55-256 (402)
147 2ghs_A AGR_C_1268P; regucalcin 77.7 33 0.0011 29.4 14.3 105 207-337 61-174 (326)
148 3zwl_B Eukaryotic translation 77.6 32 0.0011 29.3 21.5 194 109-337 88-310 (369)
149 4a2l_A BT_4663, two-component 77.3 58 0.002 32.0 21.1 195 106-337 415-620 (795)
150 1w6s_A Methanol dehydrogenase 77.2 16 0.00055 34.9 10.6 124 200-341 56-201 (599)
151 4gqb_B Methylosome protein 50; 77.1 36 0.0012 29.5 19.7 180 115-334 147-334 (344)
152 3azo_A Aminopeptidase; POP fam 77.1 51 0.0018 31.3 18.9 191 117-337 161-375 (662)
153 1qks_A Cytochrome CD1 nitrite 77.0 51 0.0017 31.2 21.8 200 107-340 166-382 (567)
154 3m0c_C LDL receptor, low-densi 76.7 62 0.0021 32.1 22.0 113 202-337 475-595 (791)
155 2dg1_A DRP35, lactonase; beta 76.7 34 0.0012 29.0 21.5 209 106-341 54-272 (333)
156 1ijq_A LDL receptor, low-densi 76.6 35 0.0012 29.2 23.0 192 105-335 39-242 (316)
157 3sov_A LRP-6, low-density lipo 76.6 36 0.0012 29.3 24.6 155 173-357 100-262 (318)
158 3k26_A Polycomb protein EED; W 76.1 36 0.0012 29.0 18.6 96 223-334 95-195 (366)
159 2hz6_A Endoplasmic reticulum t 76.0 11 0.00038 33.3 8.7 136 175-341 60-202 (369)
160 2hz6_A Endoplasmic reticulum t 76.0 0.45 1.5E-05 42.6 -0.6 27 201-234 4-30 (369)
161 2iwa_A Glutamine cyclotransfer 75.8 35 0.0012 28.7 14.3 142 173-341 43-191 (266)
162 1rwi_B Serine/threonine-protei 75.6 31 0.0011 28.1 20.4 186 107-333 77-266 (270)
163 3u4y_A Uncharacterized protein 75.6 36 0.0012 28.7 20.3 187 118-341 109-314 (331)
164 1yiq_A Quinohemoprotein alcoho 75.6 61 0.0021 31.4 14.8 36 305-340 239-293 (689)
165 1kb0_A Quinohemoprotein alcoho 75.5 56 0.0019 31.6 14.2 37 305-341 247-302 (677)
166 1q7f_A NHL, brain tumor CG1071 75.4 33 0.0011 28.3 21.4 189 106-331 87-280 (286)
167 2qc5_A Streptogramin B lactona 74.9 34 0.0012 28.2 19.2 192 105-341 70-268 (300)
168 3lrv_A PRE-mRNA-splicing facto 74.7 40 0.0014 28.9 12.6 97 224-335 105-205 (343)
169 1pjx_A Dfpase, DIISOPROPYLFLUO 74.5 37 0.0013 28.4 20.2 193 115-334 44-259 (314)
170 2hqs_A Protein TOLB; TOLB, PAL 73.6 50 0.0017 29.5 25.1 184 117-337 203-393 (415)
171 1npe_A Nidogen, entactin; glyc 73.2 37 0.0013 27.9 19.0 161 147-337 38-204 (267)
172 3dm0_A Maltose-binding peripla 73.1 68 0.0023 30.8 21.0 92 224-331 584-693 (694)
173 1rwi_B Serine/threonine-protei 72.8 37 0.0013 27.6 17.7 189 105-337 32-228 (270)
174 2z2n_A Virginiamycin B lyase; 72.0 40 0.0014 27.7 21.7 191 106-341 66-263 (299)
175 1jmx_B Amine dehydrogenase; ox 71.7 38 0.0013 28.6 11.1 101 224-342 234-336 (349)
176 3dr2_A Exported gluconolactona 70.3 22 0.00076 30.1 9.1 109 206-337 55-184 (305)
177 3i2n_A WD repeat-containing pr 70.1 49 0.0017 28.0 25.3 108 205-332 178-292 (357)
178 3iz6_a 40S ribosomal protein R 70.1 55 0.0019 28.5 19.1 194 110-333 173-377 (380)
179 3iz6_a 40S ribosomal protein R 69.8 56 0.0019 28.5 17.5 101 224-337 181-286 (380)
180 3s94_A LRP-6, low-density lipo 69.4 81 0.0028 30.1 21.0 191 104-335 48-247 (619)
181 1vyh_C Platelet-activating fac 69.3 61 0.0021 28.7 21.3 65 258-334 308-372 (410)
182 3p5b_L Low density lipoprotein 68.5 65 0.0022 28.7 20.1 109 206-337 170-283 (400)
183 1kv9_A Type II quinohemoprotei 68.5 87 0.003 30.2 16.5 37 305-341 234-289 (668)
184 1yfq_A Cell cycle arrest prote 68.1 54 0.0018 27.6 18.7 177 114-332 30-226 (342)
185 2be1_A Serine/threonine-protei 67.2 13 0.00044 32.7 6.8 30 312-341 111-140 (339)
186 1pgu_A Actin interacting prote 66.7 82 0.0028 29.2 19.4 69 257-337 171-244 (615)
187 3v65_B Low-density lipoprotein 66.3 70 0.0024 28.3 22.3 189 107-337 87-283 (386)
188 1erj_A Transcriptional repress 66.2 68 0.0023 28.1 14.7 95 224-336 146-243 (393)
189 2pbi_B Guanine nucleotide-bind 66.2 64 0.0022 27.8 20.2 182 109-328 168-354 (354)
190 1pgu_A Actin interacting prote 66.1 84 0.0029 29.1 15.4 95 224-332 468-573 (615)
191 3v9f_A Two-component system se 65.5 1.1E+02 0.0036 30.0 21.8 198 106-337 322-530 (781)
192 3dm0_A Maltose-binding peripla 65.4 98 0.0034 29.6 22.3 95 224-337 542-638 (694)
193 2kwv_A RAD30 homolog B, DNA po 64.2 3.4 0.00012 24.0 1.6 17 4-20 21-37 (48)
194 4a0p_A LRP6, LRP-6, low-densit 63.9 1E+02 0.0036 29.4 23.3 188 104-335 45-241 (628)
195 2xzm_R RACK1; ribosome, transl 63.8 69 0.0024 27.3 11.5 74 257-336 38-112 (343)
196 3hrp_A Uncharacterized protein 63.0 84 0.0029 28.0 20.9 198 106-337 140-360 (409)
197 2fp8_A Strictosidine synthase; 62.7 71 0.0024 27.1 13.5 139 117-282 165-313 (322)
198 2hes_X YDR267CP; beta-propelle 60.8 77 0.0026 26.9 19.3 72 252-332 255-329 (330)
199 4ggc_A P55CDC, cell division c 59.5 74 0.0025 26.3 20.8 147 105-283 34-182 (318)
200 4aow_A Guanine nucleotide-bind 59.3 78 0.0027 26.5 21.2 99 224-337 151-252 (340)
201 3dr2_A Exported gluconolactona 59.2 79 0.0027 26.5 20.6 202 109-341 59-276 (305)
202 3o4h_A Acylamino-acid-releasin 59.1 1.1E+02 0.0039 28.3 18.3 185 107-337 122-320 (582)
203 3hxj_A Pyrrolo-quinoline quino 58.9 32 0.0011 29.0 7.9 48 175-233 118-167 (330)
204 4hw6_A Hypothetical protein, I 58.4 1.1E+02 0.0036 27.7 12.2 115 200-334 141-262 (433)
205 2z3z_A Dipeptidyl aminopeptida 58.3 1.3E+02 0.0044 28.7 24.5 191 117-334 235-438 (706)
206 4a2l_A BT_4663, two-component 57.9 1.4E+02 0.0049 29.1 23.6 203 103-337 221-442 (795)
207 3no2_A Uncharacterized protein 57.5 83 0.0028 26.2 13.1 145 173-341 14-164 (276)
208 1mda_H Methylamine dehydrogena 57.4 37 0.0013 30.1 8.1 51 289-341 304-356 (368)
209 4h5i_A Guanine nucleotide-exch 57.3 96 0.0033 26.9 20.2 184 116-332 156-344 (365)
210 3vl1_A 26S proteasome regulato 57.1 98 0.0034 26.9 22.7 98 223-331 313-419 (420)
211 4ggc_A P55CDC, cell division c 57.1 82 0.0028 26.0 17.9 136 173-333 44-183 (318)
212 3gre_A Serine/threonine-protei 57.0 1E+02 0.0035 27.1 19.9 98 223-337 192-298 (437)
213 3f3f_A Nucleoporin SEH1; struc 56.7 85 0.0029 26.1 21.7 80 258-342 124-212 (351)
214 3tc9_A Hypothetical hydrolase; 55.5 1.2E+02 0.004 27.3 14.5 116 202-337 141-263 (430)
215 1erj_A Transcriptional repress 55.1 1.1E+02 0.0037 26.8 24.6 198 107-336 134-346 (393)
216 3sfz_A APAF-1, apoptotic pepti 54.7 2E+02 0.0068 29.7 23.6 187 109-337 629-834 (1249)
217 3s94_A LRP-6, low-density lipo 54.4 1.5E+02 0.0051 28.2 26.6 210 104-356 357-573 (619)
218 4ery_A WD repeat-containing pr 54.4 93 0.0032 25.8 20.9 178 115-330 127-311 (312)
219 3mmy_A MRNA export factor; mRN 52.6 1E+02 0.0036 25.9 20.3 182 109-333 56-249 (368)
220 2vdu_B TRNA (guanine-N(7)-)-me 51.7 1.3E+02 0.0045 26.7 23.7 144 173-335 219-397 (450)
221 2oaj_A Protein SNI1; WD40 repe 50.9 2E+02 0.007 28.7 15.4 95 224-336 40-134 (902)
222 2ad6_A Methanol dehydrogenase 50.7 1.4E+02 0.0049 28.0 11.5 26 202-234 111-136 (571)
223 3frx_A Guanine nucleotide-bind 50.4 1.1E+02 0.0039 25.6 23.1 93 224-335 177-271 (319)
224 3ow8_A WD repeat-containing pr 49.3 1.2E+02 0.0041 25.6 21.4 97 223-336 144-242 (321)
225 2xyi_A Probable histone-bindin 49.3 1.4E+02 0.0048 26.4 18.2 196 109-335 196-414 (430)
226 3ei3_B DNA damage-binding prot 47.3 1.4E+02 0.0047 25.7 19.8 156 147-331 76-236 (383)
227 2lyd_A Decapping protein 1; DC 46.7 43 0.0015 24.8 5.6 28 314-342 30-57 (134)
228 2qc5_A Streptogramin B lactona 46.2 1.2E+02 0.0041 24.7 22.3 192 102-337 25-223 (300)
229 2ynn_A Coatomer subunit beta'; 46.1 1.3E+02 0.0044 25.0 16.0 93 224-333 36-130 (304)
230 1evh_A WH1 domain, protein (ME 45.7 42 0.0014 24.0 5.3 41 118-165 12-52 (112)
231 2fp8_A Strictosidine synthase; 45.1 1.4E+02 0.0047 25.1 18.8 201 110-341 33-278 (322)
232 1qks_A Cytochrome CD1 nitrite 43.8 2.1E+02 0.0072 26.9 13.9 101 223-340 177-284 (567)
233 2z3z_A Dipeptidyl aminopeptida 43.6 2.2E+02 0.0075 27.0 19.4 153 172-337 233-397 (706)
234 3v64_C Agrin; beta propeller, 42.7 1.7E+02 0.0056 25.3 23.5 189 107-337 44-240 (349)
235 1ijq_A LDL receptor, low-densi 42.6 1.5E+02 0.0053 25.0 24.1 180 116-337 9-201 (316)
236 3gre_A Serine/threonine-protei 39.6 1.8E+02 0.0062 25.4 10.0 70 257-337 181-251 (437)
237 2dk7_A Transcription elongatio 39.6 29 0.00098 22.6 3.1 23 314-336 22-44 (73)
238 4hvt_A Ritya.17583.B, post-pro 39.0 2.8E+02 0.0096 26.9 12.7 123 204-337 297-435 (711)
239 2xdw_A Prolyl endopeptidase; a 38.1 2.7E+02 0.0094 26.6 20.7 146 173-337 258-422 (710)
240 1n7d_A LDL receptor, low-densi 37.8 1.2E+02 0.0039 29.5 8.8 57 173-235 561-617 (699)
241 2ghs_A AGR_C_1268P; regucalcin 37.3 1.9E+02 0.0064 24.4 23.2 197 107-341 60-269 (326)
242 2xzm_R RACK1; ribosome, transl 37.3 1.9E+02 0.0064 24.4 19.5 30 303-332 312-341 (343)
243 2hes_X YDR267CP; beta-propelle 37.1 1.9E+02 0.0064 24.3 21.3 78 257-342 118-195 (330)
244 1got_B GT-beta; complex (GTP-b 37.0 1.9E+02 0.0065 24.4 21.5 182 107-328 154-340 (340)
245 2be1_A Serine/threonine-protei 36.7 2.1E+02 0.0072 24.8 14.8 112 107-236 10-134 (339)
246 3c5m_A Oligogalacturonate lyas 36.2 86 0.0029 27.0 7.1 104 223-337 168-279 (396)
247 2xe4_A Oligopeptidase B; hydro 35.9 3.1E+02 0.011 26.6 14.1 120 206-337 330-464 (751)
248 3dw8_B Serine/threonine-protei 34.0 2.4E+02 0.0081 24.6 18.3 197 108-337 108-379 (447)
249 3c5m_A Oligogalacturonate lyas 33.9 2.2E+02 0.0075 24.2 16.2 199 117-337 168-390 (396)
250 3hxj_A Pyrrolo-quinoline quino 33.0 1.5E+02 0.0051 24.7 8.0 18 314-331 307-324 (330)
251 2qe8_A Uncharacterized protein 32.7 1.7E+02 0.0058 24.9 8.3 63 202-265 71-139 (343)
252 1q67_A Decapping protein invol 32.6 79 0.0027 25.4 5.2 28 314-342 36-63 (231)
253 1egx_A VAsp, vasodilator-stimu 31.7 74 0.0025 22.8 4.7 42 118-165 12-53 (115)
254 1jof_A Carboxy-CIS,CIS-muconat 31.7 2.4E+02 0.0083 24.0 16.5 117 206-337 155-298 (365)
255 1mda_H Methylamine dehydrogena 31.6 2.6E+02 0.009 24.4 9.5 59 276-341 47-115 (368)
256 1vyh_C Platelet-activating fac 30.9 2.7E+02 0.0092 24.3 22.9 141 108-282 121-265 (410)
257 3iuj_A Prolyl endopeptidase; h 30.8 3.6E+02 0.012 25.7 15.6 103 224-341 260-368 (693)
258 1w6s_A Methanol dehydrogenase 30.6 3.5E+02 0.012 25.5 19.4 64 174-238 131-199 (599)
259 1flg_A Protein (quinoprotein e 30.4 92 0.0031 29.4 6.5 30 312-341 117-146 (582)
260 4h5i_A Guanine nucleotide-exch 30.1 2.6E+02 0.009 23.9 18.4 145 173-336 156-305 (365)
261 2xzh_A Clathrin heavy chain 1; 29.1 2E+02 0.0068 25.3 7.7 40 303-342 260-301 (365)
262 2pbi_B Guanine nucleotide-bind 28.4 2.8E+02 0.0094 23.6 24.4 98 223-337 176-277 (354)
263 3ott_A Two-component system se 27.5 4.2E+02 0.014 25.5 13.1 97 224-337 83-180 (758)
264 4gga_A P55CDC, cell division c 26.1 3.3E+02 0.011 23.7 20.9 54 274-335 302-357 (420)
265 1ddw_A GLGF-domain protein hom 25.8 1.5E+02 0.005 21.4 5.4 40 117-165 11-51 (120)
266 3ju4_A Endo-N-acetylneuraminid 25.8 2.7E+02 0.0091 25.2 7.9 64 203-268 345-408 (670)
267 1z68_A Fibroblast activation p 25.7 4.3E+02 0.015 25.0 16.0 202 118-337 225-449 (719)
268 2oiz_A Aromatic amine dehydrog 25.2 3.2E+02 0.011 23.4 10.7 101 224-336 32-145 (361)
269 4gq1_A NUP37; propeller, trans 24.6 3.4E+02 0.012 23.4 12.4 67 257-335 155-222 (393)
270 2j04_A TAU60, YPL007P, hypothe 24.4 2.2E+02 0.0075 27.0 7.7 61 257-333 96-162 (588)
271 2qkl_A DCP1 protein, SPBC3B9.2 24.3 40 0.0014 24.7 2.2 27 315-342 26-52 (127)
272 3ott_A Two-component system se 24.2 4.9E+02 0.017 25.1 18.0 192 102-337 68-266 (758)
273 2w18_A PALB2, fancn, partner a 22.8 3.9E+02 0.013 23.4 8.8 33 258-298 53-85 (356)
274 1nr0_A Actin interacting prote 22.7 4.7E+02 0.016 24.3 25.3 33 305-337 453-485 (611)
275 3amr_A 3-phytase; beta-propell 22.3 3.9E+02 0.014 23.3 18.1 153 175-334 51-218 (355)
276 3sre_A PON1, serum paraoxonase 22.0 4E+02 0.014 23.2 16.9 189 115-330 81-297 (355)
277 2oaj_A Protein SNI1; WD40 repe 21.9 6E+02 0.02 25.3 23.9 34 303-336 214-247 (902)
278 2lh0_A Histone chaperone RTT10 21.9 36 0.0012 21.9 1.3 18 1-18 4-23 (70)
279 3sjl_D Methylamine dehydrogena 21.7 4.2E+02 0.014 23.4 12.0 107 223-342 59-180 (386)
280 2p4o_A Hypothetical protein; p 21.1 3.5E+02 0.012 22.3 24.1 194 107-337 42-247 (306)
281 2ymu_A WD-40 repeat protein; u 21.0 4.7E+02 0.016 23.7 25.7 96 224-337 408-504 (577)
282 3frx_A Guanine nucleotide-bind 20.6 3.6E+02 0.012 22.3 21.0 92 223-332 218-318 (319)
283 2ecf_A Dipeptidyl peptidase IV 20.1 5.6E+02 0.019 24.3 20.3 193 118-337 264-465 (741)
No 1
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.55 E-value=2.9e-12 Score=114.72 Aligned_cols=196 Identities=11% Similarity=0.162 Sum_probs=133.3
Q ss_pred EEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc--CCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG--KPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 119 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~--~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
+. ++||.|++|..+|+++..+.. ..++.+ +. +++.+.-.. .......+++|+..+++|+.++.+|...
T Consensus 80 ~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~~------~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 149 (318)
T 2woz_A 80 FF-QLDNVSSEWVGLPPLPSARCL--FGLGEV------DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV 149 (318)
T ss_dssp EE-EEETTTTEEEECSCBSSCBCS--CEEEEE------TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE
T ss_pred EE-EEeCCCCcEEECCCCCccccc--cceEEE------CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc
Confidence 67 999999999999988776542 222222 12 344443322 2234567999999999999998887665
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.... .+.++|.+|.+++..........+..||+++++|+.+ ++|... .....+..+|+|+++++..... ..-
T Consensus 150 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~--~~~ 222 (318)
T 2woz_A 150 YGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIHKGKIVIAGGVTEDG--LSA 222 (318)
T ss_dssp ESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEEEEETTE--EEE
T ss_pred cccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEECCEEEEEcCcCCCC--ccc
Confidence 4333 6779999999997643322334799999999999998 566544 3334677899999999876521 124
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee---------------CCeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---------------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---------------~~~~~~yd~~t~~~~~v 337 (366)
++|.++-. ..+|+++..++.... ..-.++ .++ .|++... ...+..||+++++|+++
T Consensus 223 ~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 223 SVEAFDLK--TNKWEVMTEFPQERS--SISLVS-LAG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEETT--TCCEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred eEEEEECC--CCeEEECCCCCCccc--ceEEEE-ECC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 67777653 467999877665432 222232 334 7777632 12499999999999998
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.55 E-value=2e-12 Score=114.99 Aligned_cols=217 Identities=9% Similarity=-0.025 Sum_probs=141.9
Q ss_pred EEeeeceeEEeec-----CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc-CCCCccE
Q 017748 102 IIGSCNGLLALED-----SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG-KPMNYTE 175 (366)
Q Consensus 102 ~~~s~~Gll~~~~-----~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~-~~~~~~~ 175 (366)
.....+|.+.+.. ....+. ++||.|++|..+|+++..+.. ..++. ++ . +++.+.-.. .......
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~iyv~GG~~~~~~~~~~ 119 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMD-CYNVVKDSWYSKLGPPTPRDS--LAACA--AE----G-KIYTSGGSEVGNSALYL 119 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEE-EEETTTTEEEEEECCSSCCBS--CEEEE--ET----T-EEEEECCBBTTBSCCCC
T ss_pred EEEEECCEEEEEeCCCCCCcceEE-EEeCCCCeEEECCCCCccccc--eeEEE--EC----C-EEEEECCCCCCCcEeee
Confidence 3344566554432 135677 999999999999988765432 22222 21 1 344443222 2244568
Q ss_pred EEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCC---CcEEEEEECCCceeeee-CCCCccCCCCceE
Q 017748 176 VAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADR---NDIIIAFDLKSEEFYQV-PLPPIVGIEGYYI 251 (366)
Q Consensus 176 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~ 251 (366)
+++|+..+++|+.++.+|...... .++.++|.+|.+++....... ...+.+||+++++|+.+ ++|... ...
T Consensus 120 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~ 194 (306)
T 3ii7_A 120 FECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR----KNH 194 (306)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC----BSC
T ss_pred EEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh----hcc
Confidence 999999999999998887654333 367789999999976432211 35799999999999998 566554 344
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEE
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLC 325 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~ 325 (366)
.++..+|+|+++++..... ..-++|.++-. .++|+++..++.... ..-.++. ++ .|++.... ..+.
T Consensus 195 ~~~~~~~~i~v~GG~~~~~--~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~-~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 195 GLVFVKDKIFAVGGQNGLG--GLDNVEYYDIK--LNEWKMVSPMPWKGV--TVKCAAV-GS-IVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp EEEEETTEEEEECCEETTE--EBCCEEEEETT--TTEEEECCCCSCCBS--CCEEEEE-TT-EEEEEECBCSSSBCCEEE
T ss_pred eEEEECCEEEEEeCCCCCC--CCceEEEeeCC--CCcEEECCCCCCCcc--ceeEEEE-CC-EEEEEeCcCCCeeeeeEE
Confidence 5677799999998865421 12346777652 367999876665332 2222222 44 77776531 3599
Q ss_pred EEeCCCCeEEEeeeec
Q 017748 326 WYDLERHRVRSIVEID 341 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~ 341 (366)
.||+++++|+.+-.+.
T Consensus 267 ~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 267 EYNTETDKWVANSKVR 282 (306)
T ss_dssp EEETTTTEEEEEEEEE
T ss_pred EEcCCCCeEEeCCCcc
Confidence 9999999999994444
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.55 E-value=4e-12 Score=112.83 Aligned_cols=211 Identities=10% Similarity=0.109 Sum_probs=138.8
Q ss_pred eeeceeEEeec------CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEE
Q 017748 104 GSCNGLLALED------SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVA 177 (366)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~ 177 (366)
...+|.+.+.. ....+. ++||.|++|..+|+++..+.. ..++. + +. +++.+.-.........++
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~iyv~GG~~~~~~~~~~~ 127 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVD-SYDPVKDQWTSVANMRDRRST--LGAAV--L----NG-LLYAVGGFDGSTGLSSVE 127 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEE-EEETTTTEEEEECCCSSCCBS--CEEEE--E----TT-EEEEEEEECSSCEEEEEE
T ss_pred EEECCEEEEEeCcCCCccccceE-EECCCCCceeeCCCCCccccc--eEEEE--E----CC-EEEEEcCCCCCccCceEE
Confidence 34456554432 124578 999999999999988765432 22222 2 12 344443323333456799
Q ss_pred EEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCC-CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEE
Q 017748 178 VFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDA-DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEA 255 (366)
Q Consensus 178 vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~ 255 (366)
+|+..+++|+.++.+|..... ...+.++|.+|.+++..... .....+..||+++++|+.+ ++|... ....++.
T Consensus 128 ~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~ 202 (302)
T 2xn4_A 128 AYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR----SGAGVGV 202 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC----BSCEEEE
T ss_pred EEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc----ccccEEE
Confidence 999999999999887765433 33677899999998764321 1124699999999999988 666554 3345677
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeC
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDL 329 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~ 329 (366)
.+|+|+++++...... .-++|.++-. ..+|.++..++.... ..-.++ .++ .|++.... ..+..||+
T Consensus 203 ~~~~iyv~GG~~~~~~--~~~~~~yd~~--~~~W~~~~~~~~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 203 LNNLLYAVGGHDGPLV--RKSVEVYDPT--TNAWRQVADMNMCRR--NAGVCA-VNG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp ETTEEEEECCBSSSSB--CCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred ECCEEEEECCCCCCcc--cceEEEEeCC--CCCEeeCCCCCCccc--cCeEEE-ECC-EEEEECCcCCCcccccEEEEcC
Confidence 8999999988654211 2357777652 367999876665432 222222 244 77777431 23999999
Q ss_pred CCCeEEEe
Q 017748 330 ERHRVRSI 337 (366)
Q Consensus 330 ~t~~~~~v 337 (366)
++++|+.+
T Consensus 275 ~~~~W~~~ 282 (302)
T 2xn4_A 275 TTDKWTVV 282 (302)
T ss_dssp TTTEEEEC
T ss_pred CCCeEEEC
Confidence 99999998
No 4
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.55 E-value=3e-12 Score=114.11 Aligned_cols=201 Identities=11% Similarity=0.134 Sum_probs=133.2
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++||.|++|..+|+++..+.. ..++. ++ + +++.+.-.........+++|+..+++|+.++.+|...
T Consensus 90 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~---~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 159 (308)
T 1zgk_A 90 SALD-CYNPMTNQWSPCAPMSVPRNR--IGVGV--ID---G--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR 159 (308)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBT--CEEEE--ET---T--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC
T ss_pred ceEE-EECCCCCeEeECCCCCcCccc--cEEEE--EC---C--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc
Confidence 3578 999999999999988765432 22222 21 2 3444432222223457999999999999998877554
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
... ..+.++|.+|.+++..... ....+..||+.+++|+.+ ++|... .....+..+++|+++++...... .-
T Consensus 160 ~~~-~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~--~~ 231 (308)
T 1zgk_A 160 IGV-GVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR----SGAGVCVLHNCIYAAGGYDGQDQ--LN 231 (308)
T ss_dssp BSC-EEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSSB--CC
T ss_pred cce-EEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCcc----ccceEEEECCEEEEEeCCCCCCc--cc
Confidence 333 3677899999998765322 134799999999999988 566544 33356677999999988654211 34
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++|.++-. ..+|+++..++.... ..-.++ .++ .|++... ...+..||+++++|+++-.+.
T Consensus 232 ~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 232 SVERYDVE--TETWTFVAPMKHRRS--ALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp CEEEEETT--TTEEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred eEEEEeCC--CCcEEECCCCCCCcc--ceEEEE-ECC-EEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 56777652 367999876654332 222222 244 7777643 134999999999999993433
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.54 E-value=2.2e-12 Score=115.31 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=133.7
Q ss_pred EEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEc---CCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 119 IMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFG---KPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 119 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~---~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+. ++||.|++|..+|+++..+.. ..++.+ +. +++.+.-.. .......+++|+..+++|+.++.+|..
T Consensus 69 ~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~~------~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 138 (315)
T 4asc_A 69 FL-QFDHLDSEWLGMPPLPSPRCL--FGLGEA------LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV 138 (315)
T ss_dssp EE-EEETTTTEEEECCCBSSCEES--CEEEEE------TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eE-EecCCCCeEEECCCCCcchhc--eeEEEE------CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc
Confidence 67 899999999999988765432 222221 12 344443222 134456899999999999999888765
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
... ..++.++|.+|.+++..........+.+||+.+++|+.+ ++|... .....+..+|+|+++++..... ..
T Consensus 139 r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~--~~ 211 (315)
T 4asc_A 139 VYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----SLFGATVHDGRIIVAAGVTDTG--LT 211 (315)
T ss_dssp CBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEEEEECSSS--EE
T ss_pred ccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----hceEEEEECCEEEEEeccCCCC--cc
Confidence 433 336779999999998743333345799999999999988 566654 3445677899999999976531 13
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------------CeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---------------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---------------~~~~~yd~~t~~~~~v 337 (366)
-++|.++-. ..+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 212 ~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 212 SSAEVYSIT--DNKWAPFEAFPQERS--SLSLVS-LVG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ceEEEEECC--CCeEEECCCCCCccc--ceeEEE-ECC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 367887763 468999876654432 222222 344 66665421 2389999999999999
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.54 E-value=3.8e-12 Score=112.94 Aligned_cols=201 Identities=10% Similarity=0.102 Sum_probs=133.8
Q ss_pred ccEEEEEeccccc---eeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCC
Q 017748 117 RNIMLLLNPLTKR---HRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 117 ~~~~~V~NP~t~~---~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
..+. ++||.|++ |..+++++..+.. ..++. ++ . +++.+.-.........+++|+..+++|+.++.+|
T Consensus 78 ~~~~-~~d~~~~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 147 (301)
T 2vpj_A 78 SSVE-CLDYTADEDGVWYSVAPMNVRRGL--AGATT--LG----D-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ 147 (301)
T ss_dssp CCEE-EEETTCCTTCCCEEECCCSSCCBS--CEEEE--ET----T-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred ceEE-EEECCCCCCCeeEECCCCCCCccc--eeEEE--EC----C-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCC
Confidence 4578 99999999 9999988765432 22222 21 2 4444432222233568999999999999998777
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..... ...+.++|.+|.+++.... .....+.+||+++++|+.+ ++|... ....++..+++|++++.......
T Consensus 148 ~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~i~v~GG~~~~~~- 220 (301)
T 2vpj_A 148 TAREG-AGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMATKR----SGAGVALLNDHIYVVGGFDGTAH- 220 (301)
T ss_dssp SCCBS-CEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCBCSSSB-
T ss_pred CCccc-ceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCCCCCccc----ccceEEEECCEEEEEeCCCCCcc-
Confidence 54433 3367789999999875432 1234799999999999998 566554 34456778999999988764211
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEeeeec
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v~~~~ 341 (366)
.-++|.++-. ..+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+-.+.
T Consensus 221 -~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 288 (301)
T 2vpj_A 221 -LSSVEAYNIR--TDSWTTVTSMTTPRC--YVGATV-LRG-RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288 (301)
T ss_dssp -CCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred -cceEEEEeCC--CCcEEECCCCCCccc--ceeEEE-ECC-EEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence 2346666652 367999876655432 222222 344 77776431 24899999999999993433
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.50 E-value=6.1e-12 Score=111.87 Aligned_cols=200 Identities=9% Similarity=0.105 Sum_probs=133.3
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
...+. ++||.+++|..+++++..+.. ..++. . +. +|+.+.-.. ......+++|+..+++|+.++.+|..
T Consensus 23 ~~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 23 PQSCR-YFNPKDYSWTDIRCPFEKRRD--AACVF--W----DN-VVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp TTSEE-EEETTTTEEEECCCCSCCCBS--CEEEE--E----TT-EEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred CceEE-EecCCCCCEecCCCCCcccce--eEEEE--E----CC-EEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCcc
Confidence 35678 999999999999988765432 22222 2 12 344433212 33456899999999999999888755
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC--
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD-- 272 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~-- 272 (366)
... ..++.++|.+|.+++..........+..||+.+++|+.+ ++|... .....+..+|+|+++++.......
T Consensus 92 r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 92 RDS-LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CBS-CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCEESCTTTCE
T ss_pred ccc-eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEEEEECCEEEEECCCCCCCCccc
Confidence 433 336778999999988653333345799999999999988 666554 334556789999999887643210
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
..-++|.++-. ..+|+++..++.... ..-.++ .++ +|++... ...+..||+++++|+.+
T Consensus 167 ~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 167 VLNSCEVYDPA--TETWTELCPMIEARK--NHGLVF-VKD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp ECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccceEEEeCCC--CCeEEECCCccchhh--cceEEE-ECC-EEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 02346666652 367999876654332 222222 244 7777642 12499999999999999
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.45 E-value=2.3e-11 Score=107.83 Aligned_cols=198 Identities=10% Similarity=0.130 Sum_probs=131.8
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc---EEEccCCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS---WRRIQDFP 193 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~---W~~~~~~~ 193 (366)
..+. ++||.|++|..+|+++..+.. ..++. .+ . +++.+.-.........+++|+..+++ |+.++.+|
T Consensus 31 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~----~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p 100 (301)
T 2vpj_A 31 DVVE-KYDPKTQEWSFLPSITRKRRY--VASVS--LH----D-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN 100 (301)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBS--CEEEE--ET----T-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS
T ss_pred eEEE-EEcCCCCeEEeCCCCChhhcc--ccEEE--EC----C-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC
Confidence 4578 999999999999987664332 22222 11 2 44444322222345679999999999 99998887
Q ss_pred cceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 194 YFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..... ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+|+|+++++.....
T Consensus 101 ~~r~~-~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~-- 172 (301)
T 2vpj_A 101 VRRGL-AGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLN-- 172 (301)
T ss_dssp SCCBS-CEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCC----BSCEEEEETTEEEEECCBCSSC--
T ss_pred CCccc-eeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCc----ccceEEEECCEEEEECCCCCCc--
Confidence 65433 3367789999999876532 2235899999999999988 666544 3345567799999998865421
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSIV 338 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v~ 338 (366)
..-++|.++-. ..+|+++..++... ....++..++ .|++.... ..+..||+++++|+.+-
T Consensus 173 ~~~~~~~~d~~--~~~W~~~~~~p~~r---~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 173 ILNSVEKYDPH--TGHWTNVTPMATKR---SGAGVALLND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp BCCCEEEEETT--TTEEEEECCCSSCC---BSCEEEEETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred ccceEEEEeCC--CCcEEeCCCCCccc---ccceEEEECC-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 12346666652 36799986665433 2222222344 77776531 24999999999999993
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.45 E-value=1.7e-11 Score=108.76 Aligned_cols=199 Identities=13% Similarity=0.183 Sum_probs=131.7
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++||.+++|..++++|..+.. ..++. . +. +|+.+.-.........+++|+..+++|+.++.+|...
T Consensus 30 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 99 (302)
T 2xn4_A 30 RSVE-CYDFKEERWHQVAELPSRRCR--AGMVY--M----AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR 99 (302)
T ss_dssp CCEE-EEETTTTEEEEECCCSSCCBS--CEEEE--E----TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CcEE-EEcCcCCcEeEcccCCccccc--ceEEE--E----CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc
Confidence 4577 899999999999887765432 12221 1 12 3444432222233467899999999999998887654
Q ss_pred ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcE
Q 017748 197 VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPW 275 (366)
Q Consensus 197 ~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l 275 (366)
.. ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+|+|+++++.........-
T Consensus 100 ~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 100 ST-LGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVGVVGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp BS-CEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEECCEETTTTEECC
T ss_pred cc-eEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcc----cCceEEEECCEEEEEeCCCCCCCcccc
Confidence 33 3367789999999986532 2234799999999999998 566544 334567789999999887542110122
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
++|.++- ...+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 174 ~~~~yd~--~~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 174 TVECYNA--TTNEWTYIAEMSTRRS--GAGVGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp CEEEEET--TTTEEEEECCCSSCCB--SCEEEE-ETT-EEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEEeC--CCCcEEECCCCccccc--cccEEE-ECC-EEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 4666665 2467999876654432 222222 344 77777431 2499999999999998
No 10
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.40 E-value=2.1e-11 Score=108.62 Aligned_cols=197 Identities=10% Similarity=0.070 Sum_probs=129.8
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEE----cCCCCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAF----GKPMNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~----~~~~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. ++||.+++|..++++|..+.. ..++. . +. +|+.+.-. ........+++|+..+++|+.++.+
T Consensus 39 ~~~~-~~d~~~~~W~~~~~~p~~r~~--~~~~~--~----~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 108 (308)
T 1zgk_A 39 SYLE-AYNPSNGTWLRLADLQVPRSG--LAGCV--V----GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 108 (308)
T ss_dssp CCEE-EEETTTTEEEECCCCSSCCBS--CEEEE--E----TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC
T ss_pred ceEE-EEcCCCCeEeECCCCCccccc--ceEEE--E----CC-EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC
Confidence 4577 999999999999887765432 12221 1 12 33333211 1112245789999999999999887
Q ss_pred CcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCC
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
|..... ...+.++|.+|.+++.... .....+..||+.+++|+.+ ++|... .....+..+++|++++.......
T Consensus 109 p~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 109 SVPRNR-IGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR----IGVGVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp SSCCBT-CEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSCB
T ss_pred CcCccc-cEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccc----cceEEEEECCEEEEEeCCCCCCc
Confidence 765433 3367789999999875432 1124699999999999988 666554 33345667999999988764321
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC------CeEEEEeCCCCeEEEe
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~------~~~~~yd~~t~~~~~v 337 (366)
.-++|.++- ...+|+++..++.... ..-.++ .++ .|++.... ..+..||+++++|+.+
T Consensus 183 --~~~~~~yd~--~~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 183 --LNSAECYYP--ERNEWRMITAMNTIRS--GAGVCV-LHN-CIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp --CCCEEEEET--TTTEEEECCCCSSCCB--SCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred --CceEEEEeC--CCCeEeeCCCCCCccc--cceEEE-ECC-EEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 234666665 2467999876655332 222222 244 77777531 3499999999999998
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.40 E-value=9.4e-11 Score=104.64 Aligned_cols=203 Identities=10% Similarity=0.077 Sum_probs=128.4
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-C---CCccEEEEEEecCCcEEEccCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-P---MNYTEVAVFSLRVNSWRRIQDF 192 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~---~~~~~~~vyss~t~~W~~~~~~ 192 (366)
..+. ++||.|++|.. ++++.+..+ ...+... ..+..-|+....... . .....+++|+..+++|+.++.+
T Consensus 13 ~~~~-~yd~~~~~W~~-~~~~~p~~r---~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 13 EGAV-AYDPAANECYC-ASLSSQVPK---NHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp TEEE-EEETTTTEEEE-EECCCCSCS---SEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred CceE-EECCCCCeEec-CCCCCCCCc---cceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 5678 99999999986 444332222 1112221 123223333221111 1 1123489999999999999888
Q ss_pred CcceecCCcceEECCcEEEEEeeCC--CCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCC
Q 017748 193 PYFWVTGTCSVFVNGALHWTAALNQ--DADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 193 ~~~~~~~~~~v~~~G~lYw~~~~~~--~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
|...... ..+.++|.+|.+++... .......+..||+.+++|+.+ ++|... .....+..+|+|+++++....
T Consensus 86 p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 86 PSPRCLF-GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SSCEESC-EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCTT
T ss_pred Ccchhce-eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----cceeEEEECCEEEEEeCCCCC
Confidence 7654433 36778999999998541 223345799999999999988 666654 344567789999999987321
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-C-----CeEEEEeCCCCeEEEee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-R-----GDLCWYDLERHRVRSIV 338 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~-----~~~~~yd~~t~~~~~v~ 338 (366)
....-++|.++-. ..+|+++..++.... ..-.+ ..++ +|++... + ..+..||+++++|+.+-
T Consensus 161 -~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 161 -RKCLNKMCVYDPK--KFEWKELAPMQTARS--LFGAT-VHDG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp -SCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEE-EETT-EEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred -CcccceEEEEeCC--CCeEEECCCCCCchh--ceEEE-EECC-EEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 1113357777653 467999876655332 22222 2344 6777643 1 14999999999999993
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.35 E-value=3.1e-11 Score=109.77 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=132.6
Q ss_pred EEeeeceeEEeec--CCccEEEEEecc--ccceeecCCcC-CCCCCCCcceEEEeeecCCCCeEEEEEEEE-c--C--CC
Q 017748 102 IIGSCNGLLALED--SRRNIMLLLNPL--TKRHRVLPTFY-RDLSRCVPSLEGFGFDVGSGDFKLVKILAF-G--K--PM 171 (366)
Q Consensus 102 ~~~s~~Gll~~~~--~~~~~~~V~NP~--t~~~~~LP~~~-~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~-~--~--~~ 171 (366)
..+..+|.|.+.. ....++ ++||. +++|..+|+++ ..+.. ..++.+ + + +|+.+.-. . . ..
T Consensus 14 ~~~~~~~~iyv~GG~~~~~~~-~~d~~~~~~~W~~~~~~p~~~R~~--~~~~~~--~---~--~lyv~GG~~~~~~~~~~ 83 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGTAWY-KLDTQAKDKKWTALAAFPGGPRDQ--ATSAFI--D---G--NLYVFGGIGKNSEGLTQ 83 (357)
T ss_dssp EEEEETTEEEEECGGGTTCEE-EEETTSSSCCEEECCCCTTCCCBS--CEEEEE--T---T--EEEEECCEEECTTSCEE
T ss_pred EEEEECCEEEEEeCcCCCeEE-EEccccCCCCeeECCCCCCCcCcc--ceEEEE--C---C--EEEEEcCCCCCCCccce
Confidence 3334466664443 345688 99998 49999999877 44321 222222 1 2 34443222 1 1 12
Q ss_pred CccEEEEEEecCCcEEEccCCC-cceecCCcceEECCcEEEEEeeCCCC-------------------------------
Q 017748 172 NYTEVAVFSLRVNSWRRIQDFP-YFWVTGTCSVFVNGALHWTAALNQDA------------------------------- 219 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~v~~~G~lYw~~~~~~~~------------------------------- 219 (366)
....+++|+..+++|+.++.++ ... ....++.++|.+|.+++.....
T Consensus 84 ~~~~v~~yd~~~~~W~~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLMSHAPMGM-AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp ECCCEEEEETTTTEEEECSCCCSSCC-SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred eeccEEEEeCCCCcEEECCCCCCccc-ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 2457999999999999998876 322 2233566999999999754210
Q ss_pred --CCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 220 --DRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 220 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
.....+.+||+++++|+.+ ++|.... ....++..+++|+++++.... ....-++|.++-+....+|.++..++
T Consensus 163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNKGDKTWLINGEAKP-GLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp GGCCCCEEEEEETTTTEEEEEEECSSCCC---BSCEEEEETTEEEEECCEEET-TEECCCEEEEECC---CEEEECCCSS
T ss_pred ccCCcccEEEEeCCCCcEEECCCCCCCCc---ccccEEEECCEEEEEeeecCC-CcccCceEEEEecCCCCcEEecCCCC
Confidence 0124899999999999988 6665431 224567789999999876532 11133566665322346799987764
Q ss_pred cCCCceeeEEEEecCCcEEEEEeeC-----------------------CeEEEEeCCCCeEEEeeeec
Q 017748 297 NVGGGNVKPLVYSRSEDKVLLHAVR-----------------------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~~~ 341 (366)
.... .....++..++ .|++.... ..+..||+++++|+++-.+.
T Consensus 239 ~~~~-~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 304 (357)
T 2uvk_A 239 SPDG-VAGGFAGISND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304 (357)
T ss_dssp TTTC-CBSCEEEEETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred CCcc-cccceEEEECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence 3321 11222233344 77776531 13789999999999994443
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.34 E-value=3.7e-10 Score=100.90 Aligned_cols=202 Identities=12% Similarity=0.152 Sum_probs=125.5
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEE--cC-C---CCccEEEEEEecCCcEEEccC
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAF--GK-P---MNYTEVAVFSLRVNSWRRIQD 191 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~--~~-~---~~~~~~~vyss~t~~W~~~~~ 191 (366)
... ++||.|++|...|.+ .+..+ . ..+... ..+ +|+.+.-. .. . .....+++|+..+++|+.++.
T Consensus 25 ~~~-~yd~~~~~W~~~~~~-~~~~r-~--~~~~~~--~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 25 AAV-AYDPMENECYLTALA-EQIPR-N--HSSIVT--QQN--QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEE-EEETTTTEEEEEEEC-TTSCS-S--EEEEEC--SSS--CEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred ceE-EECCCCCceecccCC-ccCCc-c--ceEEEE--ECC--EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 367 899999999884432 22211 1 111111 112 23333211 01 1 112348999999999999988
Q ss_pred CCcceecCCcceEECCcEEEEEeeCC-CCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCC
Q 017748 192 FPYFWVTGTCSVFVNGALHWTAALNQ-DADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 192 ~~~~~~~~~~~v~~~G~lYw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
+|..... ...+.++|.+|.+++... .......+.+||+.+++|+.+ ++|... .....+..+|+|+++++....
T Consensus 96 ~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 96 LPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV----YGHNVISHNGMIYCLGGKTDD 170 (318)
T ss_dssp BSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE----ESCEEEEETTEEEEECCEESS
T ss_pred CCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc----cccEEEEECCEEEEEcCCCCC
Confidence 8765433 336778999999998752 222335799999999999988 677654 233456689999999886431
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee--C----CeEEEEeCCCCeEEEeeee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV--R----GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~--~----~~~~~yd~~t~~~~~v~~~ 340 (366)
....-++|.++-. ..+|+++..++.... ..-.++ .++ .|++... + ..+..||+++++|+.+-.+
T Consensus 171 -~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 171 -KKCTNRVFIYNPK--KGDWKDLAPMKTPRS--MFGVAI-HKG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp -SCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEE-ETT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred -CCccceEEEEcCC--CCEEEECCCCCCCcc--cceEEE-ECC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 1112357777763 467999876654332 222222 344 7777642 1 2488999999999999333
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.22 E-value=1.5e-09 Score=98.58 Aligned_cols=156 Identities=11% Similarity=0.110 Sum_probs=98.5
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEEC--CCceeeee-CCCCccCCCCce
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDL--KSEEFYQV-PLPPIVGIEGYY 250 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~--~~~~~~~i-~lP~~~~~~~~~ 250 (366)
..+++|+..+++|+.++.+|.........+.++|.+|.+++..........+..||+ ++++|+.+ .+|... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~--~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD--GVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT--CCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc--cccc
Confidence 589999999999999987775433334467899999999875422212235778876 89999987 554433 1123
Q ss_pred EEEEEECCeEEEEEeecCCC---------------CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEE
Q 017748 251 ILLEALGGCLCLLCKFDDDD---------------DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKV 315 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~---------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i 315 (366)
..++..+|+|+++++....+ ....-++|.++-. ..+|.++..++.... .. .++..++ +|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~-~~~~~~~-~i 319 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA--YG-VSLPWNN-SL 319 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCB--SS-EEEEETT-EE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCCcc--cc-eeEEeCC-EE
Confidence 35678899999998864210 0111356666652 467999988776543 22 2233344 66
Q ss_pred EEEee-C------CeEEEEeCCCCeEEEe
Q 017748 316 LLHAV-R------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 316 ~~~~~-~------~~~~~yd~~t~~~~~v 337 (366)
++... + ..++.+++++++|.+.
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 66643 1 1388899999999887
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.17 E-value=1.4e-09 Score=107.35 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=125.7
Q ss_pred ccEEEEEeccccceeecC-Cc-----CCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC-CCccEEEEEEecCCcEEEc
Q 017748 117 RNIMLLLNPLTKRHRVLP-TF-----YRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP-MNYTEVAVFSLRVNSWRRI 189 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP-~~-----~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~-~~~~~~~vyss~t~~W~~~ 189 (366)
..+. ++||.|++|..++ +. +..+. ...++.+.. +. +++.+.-.... .....+++|+..+++|+.+
T Consensus 412 ~~v~-~yd~~~~~W~~~~~~~p~~~~p~~R~--~hs~~~~~~----~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~ 483 (695)
T 2zwa_A 412 NEIL-QLSIHYDKIDMKNIEVSSSEVPVARM--CHTFTTISR----NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMI 483 (695)
T ss_dssp CCEE-EEEECSSCEEEEECCCCCSCCCCCCB--SCEEEEETT----TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEEC
T ss_pred CcEE-EEECCCCeEEEeccCCCCCCCCcccc--ceEEEEEcc----CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEEC
Confidence 4578 9999999999998 52 22221 122222210 11 34444322222 2346799999999999999
Q ss_pred cCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC----CCCccCCCCceEEEEEEC---CeEE
Q 017748 190 QDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP----LPPIVGIEGYYILLEALG---GCLC 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~---g~L~ 261 (366)
+.+|....... ++.+ +|.+|.+++..... .+.+||+++++|+.+. +|... .....++++ |+||
T Consensus 484 ~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 484 KSLSHTRFRHS-ACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQGI 554 (695)
T ss_dssp CCCSBCCBSCE-EEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTEEE
T ss_pred CCCCCCcccce-EEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCEEE
Confidence 88876544333 4554 99999998875332 6999999999999885 44443 122223334 8999
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCc------eEEEEEeccCCCceeeEEEEecCCcEEEEEee---------CCeEEE
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDS------WTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---------RGDLCW 326 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---------~~~~~~ 326 (366)
++++....+....-++|.++-. ... |.++..++...- ...-.++..++ .|++... ...+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQR-YGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCC-BSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEE
T ss_pred EECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCc-ccceEEEeCCC-EEEEECCccCCCCCCCCCeEEE
Confidence 9998743211113456666643 234 888877642221 12333333334 7777643 124999
Q ss_pred EeCCCCeEEEeeeec
Q 017748 327 YDLERHRVRSIVEID 341 (366)
Q Consensus 327 yd~~t~~~~~v~~~~ 341 (366)
||+++++|+.+ .+.
T Consensus 631 yd~~t~~W~~~-~~p 644 (695)
T 2zwa_A 631 LDPLSETLTSI-PIS 644 (695)
T ss_dssp EETTTTEEEEC-CCC
T ss_pred EECCCCeEEEe-ecc
Confidence 99999999977 654
No 16
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.15 E-value=1.2e-11 Score=107.14 Aligned_cols=51 Identities=25% Similarity=0.413 Sum_probs=47.7
Q ss_pred CCCCCCCcHHHHHHHHccCCcccce-eeeccchhhhhhcCChhHHHHHHhcc
Q 017748 1 METSVQLPLDLIVDILIRLPVRSLA-RFRCVSRSFRSLIDGQDFVNRYVNHS 51 (366)
Q Consensus 1 ~~~~~~LP~dll~~IL~rLP~~~l~-r~r~VcK~W~~li~s~~F~~~~~~~~ 51 (366)
|+.+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4577899999999999999999999 99999999999999999999988766
No 17
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.15 E-value=8.1e-12 Score=79.77 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHH
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVN 45 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 45 (366)
..+..||+|++.+||++||++++.+++.|||+|+.++.++.|.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 35788999999999999999999999999999999999998754
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.10 E-value=2.3e-07 Score=86.46 Aligned_cols=285 Identities=9% Similarity=0.053 Sum_probs=150.4
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccccCCceEEEEeeecCCceeEEEeec----
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETNSNLGLFVSVENSKWKRRYYSLS---- 77 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---- 77 (366)
..++.||+|++..||+.|++++|.++..|||+|+.++.++.+.+.......-..+. . ....... .......+
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~wk~~ 92 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPL-H--IKRRKVI-KPGFIHSPWKSA 92 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCC-C--CCC--CC-SSCCCCCHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeeccccccc-c--cccceec-CCCccCCcHHHH
Confidence 35778999999999999999999999999999999999998888765433211100 0 0000000 00000000
Q ss_pred c-cccCC-CCcce--ec--CCCccCCCc-eEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEE
Q 017748 78 F-DQYAF-DNCLE--ID--LPLMKNCKF-GFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGF 150 (366)
Q Consensus 78 ~-~~~~~-~~~~~--~~--~~~~~~~~~-~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~l 150 (366)
+ .+... ..+.. .. ..+..+... ...+...+.+++....+..+. |||..+++...--.. + ......+
T Consensus 93 ~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~~ 165 (445)
T 2ovr_B 93 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK-VWSAVTGKCLRTLVG--H----TGGVWSS 165 (445)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEE-EEETTTCCEEEECCC--C----SSCEEEE
T ss_pred HhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEE-EEECCCCcEEEEEcC--C----CCCEEEE
Confidence 0 00000 00000 00 001111111 234555566666666677888 999988875432111 1 1123445
Q ss_pred eeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEE
Q 017748 151 GFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFD 229 (366)
Q Consensus 151 g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD 229 (366)
.++ +.+ ++... ....+.+++..++.-.. +..-. ..-.++..+|.....+..+ ..|..+|
T Consensus 166 ~~~---~~~-l~s~~------~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s~s~d------g~i~~wd 225 (445)
T 2ovr_B 166 QMR---DNI-IISGS------TDRTLKVWNAETGECIHTLYGHT----STVRCMHLHEKRVVSGSRD------ATLRVWD 225 (445)
T ss_dssp EEE---TTE-EEEEE------TTSCEEEEETTTTEEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEE
T ss_pred Eec---CCE-EEEEe------CCCeEEEEECCcCcEEEEECCCC----CcEEEEEecCCEEEEEeCC------CEEEEEE
Confidence 554 222 22222 14468888887764321 11111 1112344556554444433 3799999
Q ss_pred CCCceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEE
Q 017748 230 LKSEEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVY 308 (366)
Q Consensus 230 ~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~ 308 (366)
+.+.+... +..... ...-...+|...+++..+. .+.+|-++.. ..+..+.... ..+.++
T Consensus 226 ~~~~~~~~~~~~~~~------~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~------~~~~~~~~~~---~~v~~~ 285 (445)
T 2ovr_B 226 IETGQCLHVLMGHVA------AVRCVQYDGRRVVSGAYDF-----MVKVWDPETE------TCLHTLQGHT---NRVYSL 285 (445)
T ss_dssp SSSCCEEEEEECCSS------CEEEEEECSSCEEEEETTS-----CEEEEEGGGT------EEEEEECCCS---SCEEEE
T ss_pred CCCCcEEEEEcCCcc------cEEEEEECCCEEEEEcCCC-----EEEEEECCCC------cEeEEecCCC---CceEEE
Confidence 98765432 222221 1222233777766666555 8999987752 2333443211 122233
Q ss_pred ecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 309 SRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 309 ~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..++..++....++.+..||+++++....
T Consensus 286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 286 QFDGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EECCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 33565677677777899999998875543
No 19
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.00 E-value=1.8e-06 Score=80.73 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCC-hhHHHHH
Q 017748 4 SVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDG-QDFVNRY 47 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s-~~F~~~~ 47 (366)
++.||+|++.+||+.||+++|+++..|||+|+.++.+ +...+..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4569999999999999999999999999999999998 6655443
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.91 E-value=7.4e-08 Score=89.65 Aligned_cols=288 Identities=12% Similarity=0.084 Sum_probs=144.2
Q ss_pred CCCCcHH----HHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccccC---------Cc--eEEEEeeecCC
Q 017748 4 SVQLPLD----LIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIETN---------SN--LGLFVSVENSK 68 (366)
Q Consensus 4 ~~~LP~d----ll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~---------~~--~~l~~~~~~~~ 68 (366)
++.||+| |+..||+.|++++|.++..|||+|+.++.++.+.+....+..... .. ..++-+.....
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDG 90 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-------
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCC
Confidence 3569999 999999999999999999999999999998887766544321100 00 00010000000
Q ss_pred c--eeEEEeeccccc-----CC-CCcceec---CCC---ccCCCceEEEeeeceeEEeecCCccEEEEEeccccceeecC
Q 017748 69 W--KRRYYSLSFDQY-----AF-DNCLEID---LPL---MKNCKFGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLP 134 (366)
Q Consensus 69 ~--~~~~~~~~~~~~-----~~-~~~~~~~---~~~---~~~~~~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP 134 (366)
. ...++...+... .. ..|..-. ..+ .........++..+.+++....+..+. |+|..+++....-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~~~~~~~ 169 (435)
T 1p22_A 91 NAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIK-IWDKNTLECKRIL 169 (435)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEE-EEESSSCCEEEEE
T ss_pred CCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEE-EEeCCCCeEEEEE
Confidence 0 000000000000 00 0000000 000 011223344455555665555667788 9999887764432
Q ss_pred CcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEE
Q 017748 135 TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTA 213 (366)
Q Consensus 135 ~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~ 213 (366)
... .....++.+| +.+ ++.... ...+.+++..++.-.. +..-. ..-.++..++.....+
T Consensus 170 ~~h------~~~v~~l~~~---~~~-l~sg~~------dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~l~s~ 229 (435)
T 1p22_A 170 TGH------TGSVLCLQYD---ERV-IITGSS------DSTVRVWDVNTGEMLNTLIHHC----EAVLHLRFNNGMMVTC 229 (435)
T ss_dssp CCC------SSCEEEEECC---SSE-EEEEET------TSCEEEEESSSCCEEEEECCCC----SCEEEEECCTTEEEEE
T ss_pred cCC------CCcEEEEEEC---CCE-EEEEcC------CCeEEEEECCCCcEEEEEcCCC----CcEEEEEEcCCEEEEe
Confidence 211 1133445553 232 222221 4468888888765322 11111 1112344455544444
Q ss_pred eeCCCCCCCcEEEEEECCCceeeee--CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE
Q 017748 214 ALNQDADRNDIIIAFDLKSEEFYQV--PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK 291 (366)
Q Consensus 214 ~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~ 291 (366)
..+ ..|..+|+.+..-... .+.... ........+|...+++..+. .+.+|-+... ..
T Consensus 230 s~d------g~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~------~~ 288 (435)
T 1p22_A 230 SKD------RSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDR-----TIKVWNTSTC------EF 288 (435)
T ss_dssp ETT------SCEEEEECSSSSCCEEEEEECCCS----SCEEEEEEETTEEEEEETTS-----EEEEEETTTC------CE
T ss_pred eCC------CcEEEEeCCCCCCceeeeEecCCC----CcEEEEEeCCCEEEEEeCCC-----eEEEEECCcC------cE
Confidence 433 3688999987543211 111111 12222233666666565554 8999987752 22
Q ss_pred EEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 292 LATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+..+.... ..+.++..+++.++....++.+..||+++++...
T Consensus 289 ~~~~~~~~---~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 289 VRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEcCCC---CcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 33443211 1222333345467767777789999999887543
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=7.2e-08 Score=94.79 Aligned_cols=203 Identities=10% Similarity=-0.039 Sum_probs=120.6
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV 197 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~ 197 (366)
.+. ++||.|++|..++.++..+.. .....++..+ + +++.+.-.. ...+++|+..+++|+.++.++....
T Consensus 220 ~~~-~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~~---g--~lyv~GG~~----~~~v~~yd~~t~~W~~~~~~~~~R~ 288 (656)
T 1k3i_A 220 LTS-SWDPSTGIVSDRTVTVTKHDM-FCPGISMDGN---G--QIVVTGGND----AKKTSLYDSSSDSWIPGPDMQVARG 288 (656)
T ss_dssp EEE-EECTTTCCBCCCEEEECSCCC-SSCEEEECTT---S--CEEEECSSS----TTCEEEEEGGGTEEEECCCCSSCCS
T ss_pred EEE-EEeCCCCcEEeCcccCCCCCC-ccccccCCCC---C--CEEEeCCCC----CCceEEecCcCCceeECCCCCcccc
Confidence 466 999999999999877655432 1112222221 1 344432111 2379999999999999988776443
Q ss_pred cCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee------CCCCccC-----CCCc----------------
Q 017748 198 TGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV------PLPPIVG-----IEGY---------------- 249 (366)
Q Consensus 198 ~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i------~lP~~~~-----~~~~---------------- 249 (366)
. ..++.+ +|++|.+++..........+..||+++++|..+ ++|.... ....
T Consensus 289 ~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~ 367 (656)
T 1k3i_A 289 Y-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP 367 (656)
T ss_dssp S-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS
T ss_pred c-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecC
Confidence 2 235666 999999998433222334799999999999886 2332210 0000
Q ss_pred -------------------------------eEEEEE----ECCeEEEEEeecCCC---CCC-cEEEEEeccCCCCCceE
Q 017748 250 -------------------------------YILLEA----LGGCLCLLCKFDDDD---DDR-PWDLWVMKEYGVNDSWT 290 (366)
Q Consensus 250 -------------------------------~~~l~~----~~g~L~l~~~~~~~~---~~~-~l~iW~l~~~~~~~~W~ 290 (366)
....++ .+|+|+++++....+ ... ...++..+. ....|.
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~ 445 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNT 445 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCee
Confidence 001122 378999998753211 011 124555543 346799
Q ss_pred EEE--EeccCCCceeeEEEEecCCcEEEEEee-C-----------CeEEEEeCCCCeEEEe
Q 017748 291 KLA--TLLNVGGGNVKPLVYSRSEDKVLLHAV-R-----------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 291 ~~~--~i~~~~~~~~~~~~~~~~g~~i~~~~~-~-----------~~~~~yd~~t~~~~~v 337 (366)
++. .++.... ..-.++..+| +|++... + ..+..||+++++|+.+
T Consensus 446 ~~~~~~mp~~R~--~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 446 VFASNGLYFART--FHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp EECTTCCSSCCB--SCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred EEccCCCCCCcc--cCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 876 5554332 3333444456 6776643 1 2489999999999988
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.73 E-value=2.2e-07 Score=91.70 Aligned_cols=152 Identities=11% Similarity=0.146 Sum_probs=104.8
Q ss_pred CccEEEEEEecCCcEEEcc-C-----CCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCC
Q 017748 172 NYTEVAVFSLRVNSWRRIQ-D-----FPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPP 242 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~-~-----~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~ 242 (366)
....+++|+..+++|+.++ . +|... .....+.+ +|.+|.+++..........+..||+.+++|+.+ ++|.
T Consensus 410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~ 488 (695)
T 2zwa_A 410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH 488 (695)
T ss_dssp BCCCEEEEEECSSCEEEEECCCCCSCCCCCC-BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB
T ss_pred CcCcEEEEECCCCeEEEeccCCCCCCCCccc-cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC
Confidence 3557899999999999987 5 33322 23346778 999999998754322234699999999999998 6665
Q ss_pred ccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEE---eccCCCceeeE-EEEecCCcEEEE
Q 017748 243 IVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLAT---LLNVGGGNVKP-LVYSRSEDKVLL 317 (366)
Q Consensus 243 ~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~---i~~~~~~~~~~-~~~~~~g~~i~~ 317 (366)
.. .....+.+ +|+||++++.... . ++|.++-. ..+|+.+.. ++.... ..- ..+..+++.|++
T Consensus 489 ~R----~~h~~~~~~~~~iyv~GG~~~~----~-~v~~yd~~--t~~W~~~~~~g~~p~~r~--~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 489 TR----FRHSACSLPDGNVLILGGVTEG----P-AMLLYNVT--EEIFKDVTPKDEFFQNSL--VSAGLEFDPVSKQGII 555 (695)
T ss_dssp CC----BSCEEEECTTSCEEEECCBCSS----C-SEEEEETT--TTEEEECCCSSGGGGSCC--BSCEEEEETTTTEEEE
T ss_pred Cc----ccceEEEEcCCEEEEECCCCCC----C-CEEEEECC--CCceEEccCCCCCCCccc--ceeEEEEeCCCCEEEE
Confidence 54 33345554 9999999987664 3 77888763 467999876 443332 222 223333247887
Q ss_pred EeeC--------CeEEEEeCCCCe------EEEe
Q 017748 318 HAVR--------GDLCWYDLERHR------VRSI 337 (366)
Q Consensus 318 ~~~~--------~~~~~yd~~t~~------~~~v 337 (366)
.... ..+..||+++++ |+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~ 589 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK 589 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEc
Confidence 7532 249999999999 8887
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=1.6e-06 Score=85.08 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=113.0
Q ss_pred EEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCC------CCccEEEEEEecCCcEEEccCCCcc
Q 017748 122 LLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKP------MNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 122 V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~------~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
..||.+++|..++++|... .. . ++-+..+ +|+.+...... .....+++|+..+++|+.+..++..
T Consensus 170 ~~dp~~~~W~~~~~~P~~~----~~-~--av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 170 APQPGLGRWGPTIDLPIVP----AA-A--AIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp CCCTTSCEEEEEEECSSCC----SE-E--EEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred cCCCCCCeeeeeccCCCCc----ee-E--EEEecCC--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 5689999999888776521 11 1 2222112 44444322211 1234789999999999988766554
Q ss_pred eecCCcc-e-EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEee-cCCC
Q 017748 196 WVTGTCS-V-FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKF-DDDD 270 (366)
Q Consensus 196 ~~~~~~~-v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~-~~~~ 270 (366)
......+ + ..+|.+|.+++... ..+..||+.+++|..+ ++|... .....+.+ +|+|+++++. +...
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R----~~~s~~~~~dg~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR----GYQSSATMSDGRVFTIGGSWSGGV 311 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC----SSCEEEECTTSCEEEECCCCCSSS
T ss_pred CCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccc----cccceEEecCCeEEEEeCcccCCc
Confidence 4322222 3 36899999987543 2699999999999988 566544 34456777 9999999984 3211
Q ss_pred CCCcEEEEEeccCCCCCceEEEEE-----eccCCCc-----eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLAT-----LLNVGGG-----NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~-----i~~~~~~-----~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
....+ |.++- ...+|+.+.. ++..... ......+...++.++.......+..||+++++|...
T Consensus 312 ~~~~~--e~yd~--~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~ 384 (656)
T 1k3i_A 312 FEKNG--EVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 384 (656)
T ss_dssp CCCCE--EEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred ccccc--eEeCC--CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence 12234 44443 2367998622 1111000 011122222122344333344689999999998654
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=6.5e-07 Score=76.67 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=46.5
Q ss_pred CCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhHHHHHHhcccc
Q 017748 3 TSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDFVNRYVNHSIE 53 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~ 53 (366)
.++.||+|++..||+.|++++|+++..|||+||.+..++...+.+..+...
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 356799999999999999999999999999999999999999888887644
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.66 E-value=1.2e-05 Score=71.97 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCCCCcHHHHHHHHccCCcccceeeeccchhhhhhcCChhH
Q 017748 2 ETSVQLPLDLIVDILIRLPVRSLARFRCVSRSFRSLIDGQDF 43 (366)
Q Consensus 2 ~~~~~LP~dll~~IL~rLP~~~l~r~r~VcK~W~~li~s~~F 43 (366)
..++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 568899999999999999999999999999999999877653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.00 E-value=0.00014 Score=70.23 Aligned_cols=35 Identities=9% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHHHccCC-cccceeeeccchhhhhh
Q 017748 3 TSVQLPLDLIVDILIRLP-VRSLARFRCVSRSFRSL 37 (366)
Q Consensus 3 ~~~~LP~dll~~IL~rLP-~~~l~r~r~VcK~W~~l 37 (366)
.++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 478899999999999999 99999999999999988
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.71 E-value=0.3 Score=43.49 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=102.9
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++....+..+. |||..+++....-....+ ......+.+.|..+.+-+.+ . ....+.+++..+...+.
T Consensus 88 ~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~-~------~d~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 88 TVAVGSKGGDII-LWDYDVQNKTSFIQGMGP----GDAITGMKFNQFNTNQLFVS-S------IRGATTLRDFSGSVIQV 155 (383)
T ss_dssp EEEEEEBTSCEE-EEETTSTTCEEEECCCST----TCBEEEEEEETTEEEEEEEE-E------TTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCeEE-EEeCCCcccceeeecCCc----CCceeEEEeCCCCCCEEEEE-e------CCCEEEEEECCCCceEE
Confidence 444343455677 888888776544322111 22445566665322222222 1 14568888888766665
Q ss_pred ccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEe
Q 017748 189 IQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCK 265 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~ 265 (366)
+........ ...-...-+|.....+..+ ..|..+|+..+....+..... ....+... +|+ +.+.+.
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEE
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEe
Confidence 532221000 0000111245544444433 379999997665555443222 22233333 355 666555
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+. .+.+|-+....... ..+..+..... ..-+.+.. +|..++....++.+..||+++++.
T Consensus 225 ~d~-----~i~iwd~~~~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 225 VDA-----TVKLWDLRNIKDKN--SYIAEMPHEKP--VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp TTS-----EEEEEEGGGCCSTT--CEEEEEECSSC--EEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CCC-----EEEEEeCCCCCccc--ceEEEecCCCc--eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 554 89999998743222 22333333222 55566777 776666667778899999988664
No 28
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.70 E-value=0.28 Score=43.02 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=104.2
Q ss_pred ceeEEeecC-----CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 107 NGLLALEDS-----RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 107 ~Gll~~~~~-----~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
+|++.+... ...+. ++||.|++... ++........ ......+.++. ....+... ....+.+++
T Consensus 2 ~g~~v~neg~~g~~~~~l~-~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~---~~lyv~~~------~~~~v~viD 70 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLS-YYDPATCEVENEVFYRANGFKL-GDVAQSMVIRD---GIGWIVVN------NSHVIFAID 70 (328)
T ss_dssp CEEEEEECCCTTSCCBEEE-EEETTTTEEECSHHHHHHSSCC-BSCEEEEEEET---TEEEEEEG------GGTEEEEEE
T ss_pred CeEEEEecCCCCCCCceEE-EEECCCCEEhhhhHhhhcCccc-CccceEEEEEC---CEEEEEEc------CCCEEEEEE
Confidence 466665543 56788 99999988753 2110000000 11223344442 23222221 145788999
Q ss_pred ecCCcE-EEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE
Q 017748 181 LRVNSW-RRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 181 s~t~~W-~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~ 256 (366)
..++.- ++++.... ..++. -+|.+|...... ..|..+|+++.+.. .++++...........++..
T Consensus 71 ~~t~~~~~~i~~~~~-----p~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~ 139 (328)
T 3dsm_A 71 INTFKEVGRITGFTS-----PRYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY 139 (328)
T ss_dssp TTTCCEEEEEECCSS-----EEEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE
T ss_pred CcccEEEEEcCCCCC-----CcEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE
Confidence 888765 33322111 11232 478887766332 38999999998764 45655511000011123336
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-----------CeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-----------GDLC 325 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-----------~~~~ 325 (366)
+++|+++...... .+.++-++. .+. +.+++.... ..-+.+..+| ++++...+ ..++
T Consensus 140 ~~~lyv~~~~~~~----~v~viD~~t----~~~--~~~i~~g~~--p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 140 GKYVYVNCWSYQN----RILKIDTET----DKV--VDELTIGIQ--PTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp TTEEEEEECTTCC----EEEEEETTT----TEE--EEEEECSSC--BCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEE
T ss_pred CCEEEEEcCCCCC----EEEEEECCC----CeE--EEEEEcCCC--ccceEEcCCC-CEEEEECCCccCCccccCCceEE
Confidence 8899887541111 455443332 222 233433221 2234455666 77776543 4699
Q ss_pred EEeCCCCeEEEeeeec
Q 017748 326 WYDLERHRVRSIVEID 341 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~ 341 (366)
.+|+++++..+...+.
T Consensus 207 ~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 207 RIDAETFTVEKQFKFK 222 (328)
T ss_dssp EEETTTTEEEEEEECC
T ss_pred EEECCCCeEEEEEecC
Confidence 9999999987543553
No 29
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.53 E-value=0.00053 Score=66.11 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHccC-Ccccceeeeccchhhhhh
Q 017748 4 SVQLPLDLIVDILIRL-PVRSLARFRCVSRSFRSL 37 (366)
Q Consensus 4 ~~~LP~dll~~IL~rL-P~~~l~r~r~VcK~W~~l 37 (366)
.+.||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3479999999999999 899999999999999987
No 30
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.24 E-value=0.18 Score=42.34 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=77.2
Q ss_pred CcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEE
Q 017748 200 TCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDL 277 (366)
Q Consensus 200 ~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~i 277 (366)
..++. .+|.+|.-++.... ..|..+|+++++. ..+++|... +.--++..+++||.+.-.+. .+
T Consensus 23 tqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~----fgeGi~~~~~~ly~ltw~~~-------~v 87 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPY----FGAGIVAWRDRLIQLTWRNH-------EG 87 (243)
T ss_dssp EEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSSS-------EE
T ss_pred cccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCc----ceeEEEEeCCEEEEEEeeCC-------EE
Confidence 33543 45666655444211 3799999999877 556888765 44456777999999865433 45
Q ss_pred EEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 278 WVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 278 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
|+++. .+-..+.+++.... ..++..+++.+++...+.++..+|++|.+...-.++.
T Consensus 88 ~v~D~----~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 88 FVYDL----ATLTPRARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EEEET----TTTEEEEEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEEEC----CcCcEEEEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 66665 23566777776432 3455566767888776678999999998764332553
No 31
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.96 E-value=0.82 Score=40.64 Aligned_cols=195 Identities=7% Similarity=-0.004 Sum_probs=97.9
Q ss_pred EEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 102 ~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
.....+|.+.+......++ .+|+.|++.++--....... ... .+. +. +|+... ....+..|+.
T Consensus 98 ~~~~~~~~v~v~~~~g~l~-a~d~~tG~~~W~~~~~~~~~---~~p-~~~-----~~-~v~v~~------~~g~l~~~d~ 160 (376)
T 3q7m_A 98 GVTVSGGHVYIGSEKAQVY-ALNTSDGTVAWQTKVAGEAL---SRP-VVS-----DG-LVLIHT------SNGQLQALNE 160 (376)
T ss_dssp EEEEETTEEEEEETTSEEE-EEETTTCCEEEEEECSSCCC---SCC-EEE-----TT-EEEEEC------TTSEEEEEET
T ss_pred CceEeCCEEEEEcCCCEEE-EEECCCCCEEEEEeCCCceE---cCC-EEE-----CC-EEEEEc------CCCeEEEEEC
Confidence 3445678887776667788 99999988543211111110 011 111 12 233221 1346778887
Q ss_pred cCC--cEEEccCCCcc-eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--eee-CCCCccCC----CCceE
Q 017748 182 RVN--SWRRIQDFPYF-WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQV-PLPPIVGI----EGYYI 251 (366)
Q Consensus 182 ~t~--~W~~~~~~~~~-~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~i-~lP~~~~~----~~~~~ 251 (366)
.++ .|+.-...+.. ......++..+|.+|.-... ..+.++|.++.+. +.- ..|..... .....
T Consensus 161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 161 ADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp TTCCEEEEEECCC-----CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred CCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 665 48764332211 11223456677877664322 3799999987644 322 22221100 00011
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
.....+|.+++... .. .+..+-.+. .+..|... .... ..+ .+ .++.|++...++.++++|+++
T Consensus 234 ~p~~~~~~v~~~~~-~g-----~l~~~d~~t--G~~~w~~~----~~~~--~~~-~~--~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 234 TPVVVNGVVFALAY-NG-----NLTALDLRS--GQIMWKRE----LGSV--NDF-IV--DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp CCEEETTEEEEECT-TS-----CEEEEETTT--CCEEEEEC----CCCE--EEE-EE--ETTEEEEEETTCCEEEEETTT
T ss_pred CcEEECCEEEEEec-Cc-----EEEEEECCC--CcEEeecc----CCCC--CCc-eE--ECCEEEEEcCCCeEEEEECCC
Confidence 22344677776542 21 333333222 23446542 1111 222 22 345888888777899999999
Q ss_pred CeEEEe
Q 017748 332 HRVRSI 337 (366)
Q Consensus 332 ~~~~~v 337 (366)
++..+-
T Consensus 297 G~~~w~ 302 (376)
T 3q7m_A 297 GVTLWT 302 (376)
T ss_dssp CCEEEE
T ss_pred CcEEEe
Confidence 997665
No 32
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.87 Score=45.05 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=95.8
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+..+. |||..++....+.....+ ......+.+.+..+.-.++.... ...+.+++..++.|.........
T Consensus 30 dg~I~-vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~h 98 (753)
T 3jro_A 30 DKTIK-IFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSY------DGKVLIWKEENGRWSQIAVHAVH 98 (753)
T ss_dssp TTEEE-EEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEET------TSCEEEEEEETTEEEEEEEECCC
T ss_pred CCcEE-EEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEEEEeC------CCeEEEEECCCCcccccccccCC
Confidence 34455 777653333322222211 12344566655432223333321 45689999999887665432211
Q ss_pred eecCCcceEEC----CcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE--------------
Q 017748 196 WVTGTCSVFVN----GALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-------------- 256 (366)
Q Consensus 196 ~~~~~~~v~~~----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-------------- 256 (366)
.. .-.++.+. |.....+..+ ..|..+|+.+..-. ...+.... .....+...
T Consensus 99 ~~-~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~---~~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 99 SA-SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA---IGVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp SS-CEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCS---SCEEEEEECCCC---------CG
T ss_pred CC-CeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCC---CceEEEEecCcccccccccccCC
Confidence 11 01122222 4454444443 37999998876221 11111111 111222222
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC---CcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS---EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+|.+.+++..++ .+.+|-+... ...+.....+.... +...-+++.++ +..++....++.+..||+.+++
T Consensus 169 d~~~l~sgs~dg-----~I~iwd~~~~--~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 169 ESRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp GGCCEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCEEEEEECCC-----eEEEEeccCC--cccceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 356666666555 8999999873 24566666654321 11445566666 6445555667779999999863
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.50 E-value=0.35 Score=41.19 Aligned_cols=113 Identities=7% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 207 GALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 207 G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
|.+|.-++.... ..|..+|+++++. ..+++|... +..-++..+++||++.-.++ . +++++.
T Consensus 32 g~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~g~~lyv~t~~~~-----~--v~viD~--- 93 (266)
T 2iwa_A 32 DTLFESTGLYGR----SSVRQVALQTGKVENIHKMDDSY----FGEGLTLLNEKLYQVVWLKN-----I--GFIYDR--- 93 (266)
T ss_dssp TEEEEEECSTTT----CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEETTCS-----E--EEEEET---
T ss_pred CeEEEECCCCCC----CEEEEEECCCCCEEEEEecCCCc----ceEEEEEeCCEEEEEEecCC-----E--EEEEEC---
Confidence 677765543211 3899999998776 445776644 33345666889998876433 3 556664
Q ss_pred CCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 286 NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.+-..+.+++.. . ....++..+|+.+++...++.+..+|++|.+...-..+.
T Consensus 94 -~t~~v~~~i~~g-~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 94 -RTLSNIKNFTHQ-M--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp -TTTEEEEEEECC-S--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred -CCCcEEEEEECC-C--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 235666777654 1 123456667778888766667999999997754332553
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.42 E-value=1.3 Score=40.19 Aligned_cols=191 Identities=12% Similarity=0.023 Sum_probs=99.3
Q ss_pred ceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 99 FGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 99 ~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.+..++..+.+++....+..+. |||..+++...--.. + ......+.+++ . .++.... ...+.+
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~l~~~~---~-~l~s~s~------dg~i~v 237 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVR-VWDVNTGEMLNTLIH--H----CEAVLHLRFNN---G-MMVTCSK------DRSIAV 237 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEE-EEESSSCCEEEEECC--C----CSCEEEEECCT---T-EEEEEET------TSCEEE
T ss_pred cEEEEEECCCEEEEEcCCCeEE-EEECCCCcEEEEEcC--C----CCcEEEEEEcC---C-EEEEeeC------CCcEEE
Confidence 3444444455555555667788 999988875432111 1 12344455542 2 2222221 446788
Q ss_pred EEecCCcEEEc-cCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRRI-QDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~~-~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~ 256 (366)
|+..++.-... .... .....-.++..+|.....+..+ ..|..+|+.+.+... +..... .......
T Consensus 238 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~------~v~~~~~ 304 (435)
T 1p22_A 238 WDMASPTDITLRRVLV-GHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNGHKR------GIACLQY 304 (435)
T ss_dssp EECSSSSCCEEEEEEC-CCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEECCSS------CEEEEEE
T ss_pred EeCCCCCCceeeeEec-CCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEcCCCC------cEEEEEe
Confidence 88876432110 0000 0001112344577666555544 379999998865432 222211 1222233
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+|.+.+++..++ .+.+|-+... ..+..+.... ..+.++..+++.++....++.+..||+++++
T Consensus 305 ~~~~l~~g~~dg-----~i~iwd~~~~------~~~~~~~~h~---~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 305 RDRLVVSGSSDN-----TIRLWDIECG------ACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTEEEEEETTS-----CEEEEETTTC------CEEEEECCCS---SCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCEEEEEeCCC-----eEEEEECCCC------CEEEEEeCCc---CcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 566666666555 8999988752 2233443211 2233333466566667777789999987654
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.41 E-value=1.3 Score=38.90 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=101.1
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCC-CCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGS-GDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+++....+..+. |||..++++..+-..... ......+.+.+.. +.+-+++ .. ...+.+|+..++.-
T Consensus 70 ~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~-~~------d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 70 TILASCSYDGKVL-IWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVA-SS------DGKVSVVEFKENGT 137 (379)
T ss_dssp SEEEEEETTSCEE-EEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEE-ET------TSEEEEEECCTTSC
T ss_pred CEEEEeccCCEEE-EEEcCCCceeEeeeecCC----CcceEEEEeCCCCCCCEEEEe-cC------CCcEEEEecCCCCc
Confidence 3444444556678 999888864443332221 1234556666653 3333332 21 45678888876521
Q ss_pred -E--EccCCCccee---cCCcce--------EECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeee-CCCCccCCCCc
Q 017748 187 -R--RIQDFPYFWV---TGTCSV--------FVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQV-PLPPIVGIEGY 249 (366)
Q Consensus 187 -~--~~~~~~~~~~---~~~~~v--------~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i-~lP~~~~~~~~ 249 (366)
. .+........ ...... .-+|.....+..+ ..|..+|+.+.. +..+ .+.... ..
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~---~~ 208 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHS---DW 208 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCS---SC
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEeccc---Cc
Confidence 1 1111111100 000000 0035555444433 258888886543 3332 222221 12
Q ss_pred eEEEEEE-C---CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeCCeE
Q 017748 250 YILLEAL-G---GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVRGDL 324 (366)
Q Consensus 250 ~~~l~~~-~---g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~ 324 (366)
...+... + |++.+....+. .+.+|.++... ..+... ....... ....-+++..+|..|+....++.+
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQ--GPWKKT-LLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTT--SCCEEE-ESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred EeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCC--ccceee-eeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 2233333 2 56666665554 89999998742 223322 2221111 124445677788667777777789
Q ss_pred EEEeCC-CCeEEEeeee
Q 017748 325 CWYDLE-RHRVRSIVEI 340 (366)
Q Consensus 325 ~~yd~~-t~~~~~v~~~ 340 (366)
..||+. .++|+.+.++
T Consensus 281 ~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 281 TLWKENLEGKWEPAGEV 297 (379)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEeCCCCCccccccce
Confidence 999998 5677776333
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.38 E-value=1.3 Score=38.83 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=78.7
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEEC----CcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVN----GALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~ 247 (366)
...+.+|+..++.|..+........ .-..+.+. |.+...+..+ ..|..+|+.+..- ....+....
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~--- 147 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA--- 147 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCT---
T ss_pred CCEEEEEEcCCCceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCC---
Confidence 3468899999988866543321110 01122222 4444444433 3789999887632 222211111
Q ss_pred CceEEEEEE--------------CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC--
Q 017748 248 GYYILLEAL--------------GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS-- 311 (366)
Q Consensus 248 ~~~~~l~~~--------------~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-- 311 (366)
.....+... ++.+.+++..+. .+.+|-+... ...|.....+.... ....-+++.++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~h~-~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVL 219 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCS
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCC--CcceeeEEEEeccc-CcEeEEEECCCCC
Confidence 112222222 366666666555 8999999863 34577666665321 11445566677
Q ss_pred -CcEEEEEeeCCeEEEEeCCCCe
Q 017748 312 -EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 312 -g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+..++....++.+..||++++.
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCeEEEEeCCCEEEEEeCCCCC
Confidence 5455555667779999999873
No 37
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.37 E-value=0.3 Score=41.34 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=72.8
Q ss_pred EECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEecc
Q 017748 204 FVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 204 ~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
+.+|.+|.-++.... ..|..+|+++.+. ..+++|... +.--++..+++||++.-.+. .+|+++.
T Consensus 50 ~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~----FgeGit~~g~~ly~ltw~~~-------~v~v~D~ 114 (262)
T 3nol_A 50 YRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRY----FGEGISDWKDKIVGLTWKNG-------LGFVWNI 114 (262)
T ss_dssp EETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSSS-------EEEEEET
T ss_pred EECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCcc----ceeEEEEeCCEEEEEEeeCC-------EEEEEEC
Confidence 456777776655321 3799999999876 555777654 44456778999999865433 3556664
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
.+-..+.+++.... ..++..+|+.+++.....++..+|++|.+...-..+
T Consensus 115 ----~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 115 ----RNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp ----TTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred ----ccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 22445666765331 234455676777766566799999998765432255
No 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.25 E-value=1.5 Score=38.85 Aligned_cols=186 Identities=9% Similarity=0.012 Sum_probs=98.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. ++|+.+++....-... .....+.+++.. .+-++.. .....+.+++..++.....-....
T Consensus 94 ~~~~v~-v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg-~~l~~~~------~~~~~v~~~d~~~~~~~~~~~~~~ 158 (391)
T 1l0q_A 94 ASSTLS-VIDTTSNTVAGTVKTG-------KSPLGLALSPDG-KKLYVTN------NGDKTVSVINTVTKAVINTVSVGR 158 (391)
T ss_dssp TTTEEE-EEETTTTEEEEEEECS-------SSEEEEEECTTS-SEEEEEE------TTTTEEEEEETTTTEEEEEEECCS
T ss_pred CCCEEE-EEECCCCeEEEEEeCC-------CCcceEEECCCC-CEEEEEe------CCCCEEEEEECCCCcEEEEEecCC
Confidence 446788 9999998765432221 123456666542 3322221 114578889888776543211111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDD 270 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~ 270 (366)
. ...+.+ +|...++....+ ..|..+|+.+.+.... ..+. ....+... +|+..++.....
T Consensus 159 ~----~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~-- 221 (391)
T 1l0q_A 159 S----PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK-- 221 (391)
T ss_dssp S----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS--
T ss_pred C----cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEecCC------CccceEECCCCCEEEEEecCc--
Confidence 1 112222 455444443332 3799999998765433 3222 12223333 455444444310
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEE-eeCCeEEEEeCCCCeEEEeeee
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLH-AVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
....+.+|-++. ...+..++.... ..-+.+..+|+.|++. ..++.+..||+++++.......
T Consensus 222 ~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 222 YFNTVSMIDTGT------NKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SCCEEEEEETTT------TEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCC------CeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 011788887764 233445544322 3345667778667666 4467799999999987765344
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.15 E-value=1.4 Score=37.86 Aligned_cols=186 Identities=8% Similarity=0.050 Sum_probs=96.0
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
+..+. |||..+++... +........ ......+.+.+. +.+-++. .. ...+.+|+..++..........
T Consensus 71 dg~i~-iw~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~-~~------d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 71 KGCVK-VWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPD-GCTLIVG-GE------ASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp BSEEE-EEETTSTTCCSCSEEEECSCT--TSBEEEEEECTT-SSEEEEE-ES------SSEEEEEECCCC--EEEEEEEC
T ss_pred CCeEE-EEECCCCCceeeeecccccCC--CCcEEEEEEcCC-CCEEEEE-cC------CCcEEEEECCCCCcceeeeccc
Confidence 55677 88887754321 111110001 224455666663 2332222 21 4578899988876543321111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeecCCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDD 270 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~ 270 (366)
.. ..-..+.+ +|.....+... ..|..+|+.+.+... +..+.. ....+... +|+..++...+.
T Consensus 140 ~~-~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg-- 205 (337)
T 1gxr_A 140 SA-PACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLDN-- 205 (337)
T ss_dssp SS-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS--
T ss_pred CC-CceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecCC--
Confidence 00 00011222 45555554443 268999998865433 232221 12233333 566666555444
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-++.. ..+..+..... ..-+.+.++++.++....++.+..||+++++...+
T Consensus 206 ---~i~~~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 206 ---TVRSWDLREG------RQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp ---EEEEEETTTT------EEEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ---cEEEEECCCC------ceEeeecCCCc--eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 8999987652 22333333222 44566677786777777777899999999876555
No 40
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.13 E-value=1.6 Score=38.62 Aligned_cols=180 Identities=12% Similarity=0.018 Sum_probs=94.8
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. ++|..+++....-... .....+.+++.. .+-++... ....+.+++..++.-...-....
T Consensus 10 ~d~~v~-v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg-~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 10 ESDNIS-VIDVTSNKVTATIPVG-------SNPMGAVISPDG-TKVYVANA------HSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp TTTEEE-EEETTTTEEEEEEECS-------SSEEEEEECTTS-SEEEEEEG------GGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEE-EEECCCCeEEEEeecC-------CCcceEEECCCC-CEEEEECC------CCCeEEEEECCCCeEEEEEECCC
Confidence 456677 9999888765432111 123455666542 23222221 14578889988775433211111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCe-EEEEEeecCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDD 269 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~ 269 (366)
. ..++.+ +|...+++.... ..|..+|+.+.+.... ..+.. ...+... +|+ |++....+.
T Consensus 75 ~----v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~- 138 (391)
T 1l0q_A 75 S----PQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGKS------PLGLALSPDGKKLYVTNNGDK- 138 (391)
T ss_dssp S----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEETTTT-
T ss_pred C----ccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCCC------cceEEECCCCCEEEEEeCCCC-
Confidence 1 112222 455444443321 3799999998766433 33221 2233333 455 444443333
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+.. .+. +..+..... ...+.+..+|+.+++.. .++.+..||+++++....
T Consensus 139 ----~v~~~d~~~----~~~--~~~~~~~~~--~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 139 ----TVSVINTVT----KAV--INTVSVGRS--PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp ----EEEEEETTT----TEE--EEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ----EEEEEECCC----CcE--EEEEecCCC--cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 888887654 222 233333222 44566777776676554 456799999999887655
No 41
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=94.97 E-value=2 Score=38.69 Aligned_cols=194 Identities=9% Similarity=0.035 Sum_probs=102.1
Q ss_pred eceeEEeec-CCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
.+|-+++.. ....+. ++|+.+++... ++.. ......+.+++.. .+-++... ....+.+|+..+
T Consensus 179 ~~~~~~~s~~~d~~v~-~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~~~------~~~~i~~~d~~~ 243 (433)
T 3bws_A 179 EHNELWVSQMQANAVH-VFDLKTLAYKATVDLT-------GKWSKILLYDPIR-DLVYCSNW------ISEDISVIDRKT 243 (433)
T ss_dssp GGTEEEEEEGGGTEEE-EEETTTCCEEEEEECS-------SSSEEEEEEETTT-TEEEEEET------TTTEEEEEETTT
T ss_pred CCCEEEEEECCCCEEE-EEECCCceEEEEEcCC-------CCCeeEEEEcCCC-CEEEEEec------CCCcEEEEECCC
Confidence 355544443 446677 99988866533 3311 1234456666643 23222211 134688899887
Q ss_pred CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCC--CCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-C
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDAD--RNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-G 257 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~ 257 (366)
+.....-..... ..++.+ +|...+.+....... ....|..+|+.+.+.... ..+.. ...+... +
T Consensus 244 ~~~~~~~~~~~~----~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~ 313 (433)
T 3bws_A 244 KLEIRKTDKIGL----PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN------KRHIVSGNT 313 (433)
T ss_dssp TEEEEECCCCSE----EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC------EEEEEECSS
T ss_pred CcEEEEecCCCC----ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC------cceEEECCC
Confidence 765332111111 112222 565555554321100 124799999988765333 22211 1122222 3
Q ss_pred C-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---------------
Q 017748 258 G-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR--------------- 321 (366)
Q Consensus 258 g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~--------------- 321 (366)
| .|++....+. .+.+|.++. ...+..++.... ..-+++.++|..+++...+
T Consensus 314 g~~l~~~~~~~~-----~v~v~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 314 ENKIYVSDMCCS-----KIEVYDLKE------KKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp TTEEEEEETTTT-----EEEEEETTT------TEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred CCEEEEEecCCC-----EEEEEECCC------CcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 5 4555544443 899998774 233444443322 4556677778667766542
Q ss_pred CeEEEEeCCCCeEEEe
Q 017748 322 GDLCWYDLERHRVRSI 337 (366)
Q Consensus 322 ~~~~~yd~~t~~~~~v 337 (366)
+.+..||+++++....
T Consensus 381 g~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred eEEEEEECCCCcEEEE
Confidence 4799999999887655
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.92 E-value=0.66 Score=42.31 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=96.1
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+|.....+..+. |||..+++...+-....+ .....++.|.|..+.+-+ ... ....+.+++.+++.-+.
T Consensus 134 ~lasGs~dg~i~-lWd~~~~~~~~~~~~~gH----~~~V~~l~f~p~~~~~l~-s~s------~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 134 TVAVGSKGGDIM-LWNFGIKDKPTFIKGIGA----GGSITGLKFNPLNTNQFY-ASS------MEGTTRLQDFKGNILRV 201 (435)
T ss_dssp CEEEEETTSCEE-EECSSCCSCCEEECCCSS----SCCCCEEEECSSCTTEEE-EEC------SSSCEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEE-EEECCCCCceeEEEccCC----CCCEEEEEEeCCCCCEEE-EEe------CCCEEEEeeccCCceeE
Confidence 555555566788 999988765433222111 113345667665444422 221 13457888887766554
Q ss_pred ccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEE
Q 017748 189 IQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLC 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~ 264 (366)
+....... ....++. -+|.+...+... ..|..+|+..+....+..... ....+... ++. +.+.+
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 202 FASSDTIN-IWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRMHKK-----KVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EECCSSCS-CCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBCCSS-----CEEEEEECTTCSSEEEEE
T ss_pred EeccCCCC-ccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEecccc-----eEEeeeecCCCceEEEEe
Confidence 42211100 0011222 245555444433 368889987654433322211 12233332 344 44444
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
..+. .+.||-+.......... ....... ...-+++..+|..|+....++.+..||+.++..
T Consensus 270 s~d~-----~v~iwd~~~~~~~~~~~--~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 270 SVDQ-----TVKIWDLRQVRGKASFL--YSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp ETTS-----BCCEEETTTCCSSSCCS--BCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred cCcc-----eeeEEecccccccceEE--Eeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 4444 79999876542211110 0001111 122334556776676677777899999988654
No 43
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.78 E-value=0.62 Score=41.17 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=87.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc-EEEccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS-WRRIQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~ 193 (366)
.+..+. |||..++.+..+-....+ ......+.+.+.. .+-+.+ . ....+.+|+..++. |.....+.
T Consensus 31 ~d~~i~-iw~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~-~~l~s~-s------~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 31 ATNQVE-LYEQDGNGWKHARTFSDH----DKIVTCVDWAPKS-NRIVTC-S------QDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp SSSCBC-EEEEETTEEEECCCBCCC----SSCEEEEEECTTT-CCEEEE-E------TTSSEEEC------CCCCEEECC
T ss_pred CCCEEE-EEEccCCceEEEEEEecC----CceEEEEEEeCCC-CEEEEE-e------CCCeEEEEEcCCCCceeeeeEec
Confidence 455677 899888754444333322 2234556666653 332222 1 13457888887765 44322111
Q ss_pred cceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce----eeeeCCCCccCCCCceEEEEEE-CCeEEEEEee
Q 017748 194 YFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE----FYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKF 266 (366)
Q Consensus 194 ~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~----~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~ 266 (366)
... ..-..+.+ +|.....+..+ ..|..+|+.+.+ ...+..|... ....+... +|++.+.+..
T Consensus 98 ~~~-~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 98 RLN-RAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRS----TILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp CCS-SCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCS----CEEEEEECTTSSEEEEEES
T ss_pred ccC-CceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCC----CeEEEEEcCCCCEEEEEeC
Confidence 100 00011111 34443333332 258888888765 2333332211 22333333 4666665555
Q ss_pred cCCCCCCcEEEEEeccCC-----CCCceE-------EEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 267 DDDDDDRPWDLWVMKEYG-----VNDSWT-------KLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 267 ~~~~~~~~l~iW~l~~~~-----~~~~W~-------~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
+. .+.+|.++... ....|. .+..+... ....-+++.++|..|+....++.+..||+++++.
T Consensus 167 d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 167 DR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG--GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCS--SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CC-----EEEEEEEEecccCCCccccccccccchhhhhhcccCC--ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 54 89999986321 111221 22222111 1244456677886666677778899999998864
No 44
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.74 E-value=0.41 Score=40.61 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=71.9
Q ss_pred ceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEE
Q 017748 202 SVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 202 ~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
++. .+|.+|.-++.. ..|..+|+++++. ..+ +|... +.--++..+++||++.-.+. .+|+
T Consensus 59 GL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~----FgeGit~~g~~Ly~ltw~~~-------~v~V 120 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNI----FAEGLASDGERLYQLTWTEG-------LLFT 120 (268)
T ss_dssp EEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTC----CEEEEEECSSCEEEEESSSC-------EEEE
T ss_pred eEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCc----ceeEEEEeCCEEEEEEccCC-------EEEE
Confidence 444 445666555443 2699999999876 445 76643 33346677899999865433 3566
Q ss_pred eccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 280 MKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 280 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++- .+-..+.+++...- ..++..+|+.+++.....++..+|++|.+...-..+.
T Consensus 121 ~D~----~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 121 WSG----MPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp EET----TTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEC----CcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence 665 23556667765331 2344556767777766667999999997765332553
No 45
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.74 E-value=1.4 Score=39.07 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=68.4
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccC-----CCCceEEEEEECCeEEEEEeecCCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVG-----IEGYYILLEALGGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~-----~~~~~~~l~~~~g~L~l~~~~~~~~~~~ 273 (366)
..++..+|.+|.....+ .|.+||.++.+... ..++.... ........+..+|.|++.... .
T Consensus 47 ~~p~v~~~~v~~~~~~g-------~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-g----- 113 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG-------LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-A----- 113 (376)
T ss_dssp CCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-S-----
T ss_pred eccEEECCEEEEEcCCC-------eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-C-----
Confidence 35788899998776443 79999998655432 23332110 111234556678888875532 1
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeee
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 340 (366)
. |..++....+..|... ++.... ..|... ++ .|++...++.++++|.+|++..+-++.
T Consensus 114 ~--l~a~d~~tG~~~W~~~--~~~~~~--~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 114 Q--VYALNTSDGTVAWQTK--VAGEAL--SRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp E--EEEEETTTCCEEEEEE--CSSCCC--SCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred E--EEEEECCCCCEEEEEe--CCCceE--cCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 2 4445533234557552 222111 233322 34 888888778899999999986655343
No 46
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.16 E-value=2.5 Score=36.36 Aligned_cols=183 Identities=9% Similarity=0.038 Sum_probs=95.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE--EEccCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW--RRIQDF 192 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W--~~~~~~ 192 (366)
....+. ++|+.|++....-..+ .... ++.+++... +-++... ....+.+++..++.- +.+..-
T Consensus 18 ~~~~v~-~~d~~~~~~~~~~~~~------~~~~-~~~~s~dg~-~l~~~~~------~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 18 HLRRIS-FFSTDTLEILNQITLG------YDFV-DTAITSDCS-NVVVTSD------FCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp GGTEEE-EEETTTCCEEEEEECC------CCEE-EEEECSSSC-EEEEEES------TTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCCeEE-EEeCcccceeeeEEcc------CCcc-eEEEcCCCC-EEEEEeC------CCCeEEEEECCCCceeEEecccC
Confidence 455677 9999998875432221 1122 667766533 3222211 133788888887653 222110
Q ss_pred CcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCe-EEEEEeec
Q 017748 193 PYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGC-LCLLCKFD 267 (366)
Q Consensus 193 ~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~ 267 (366)
. ....++. -+|...+....... ...|..+|+++.+... ++.+... ..+... +|+ |++.....
T Consensus 83 ~----~~~~~~~~s~dg~~l~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~------~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 83 Q----SSMADVDITPDDQFAVTVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA------VGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp S----SCCCCEEECTTSSEEEECCCSSS---SCEEEEEETTTTEEEEEEECCTTE------EEEEECTTSSCEEEEEETT
T ss_pred C----CCccceEECCCCCEEEEecCCCC---cccEEEEECCCCCeEEEEECCCCc------cceEECCCCCEEEEEecCC
Confidence 0 1111122 24553333332211 1279999998876533 3332221 233333 454 66655543
Q ss_pred CCCCCCc-EEEEEeccCCCCCceEE-EEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 268 DDDDDRP-WDLWVMKEYGVNDSWTK-LATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 268 ~~~~~~~-l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
. . +.+|.++..+. .... ...+..... ..-+.+.++|+.+++... ++.+..||+++++.
T Consensus 150 ~-----~~i~~~~~~~~g~--~~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 150 A-----NTVRRFKIDADGV--LFDTGQEFISGGTR--PFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp T-----TEEEEEEECTTCC--EEEEEEEEECSSSS--EEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred C-----ceEEEEEECCCCc--EeecCCccccCCCC--ccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3 6 99999986431 1111 122322221 445667788866777654 56799999998885
No 47
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.07 E-value=2.3 Score=35.74 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=93.6
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|.+.+.. ....++ ++|| +++...+..+.. .....++.+|+.. ++.... .....+.+|+. ++
T Consensus 108 ~~g~l~v~~~~~~~i~-~~d~-~g~~~~~~~~~~-----~~~~~~i~~~~~g---~l~v~~-----~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIG-RITD-DGKIREYELPNK-----GSYPSFITLGSDN---ALWFTE-----NQNNAIGRITE-SG 171 (299)
T ss_dssp TTSCEEEEETTTTEEE-EECT-TCCEEEEECSST-----TCCEEEEEECTTS---CEEEEE-----TTTTEEEEECT-TC
T ss_pred CCCCEEEEecCCceEE-EECC-CCCEEEecCCCC-----CCCCceEEEcCCC---CEEEEe-----CCCCEEEEEcC-CC
Confidence 456665544 456688 9999 776665432211 1234566666542 222211 11345677777 66
Q ss_pred cEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
........ ... ....++.+ +|.+|+..... ..|..||+ +.++..+.+|... .....+... +|.|+
T Consensus 172 ~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 172 DITEFKIP-TPA-SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPN---ARPHAITAGAGIDLW 239 (299)
T ss_dssp CEEEEECS-STT-CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTT---CCEEEEEECSTTCEE
T ss_pred cEEEeeCC-CCC-CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCC---CCceeEEECCCCCEE
Confidence 66553211 100 11123444 47775544322 37999999 7777766666332 122234443 57888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+...... .+..|-. . ..- ....++. ......-+.+ .+| .+++....+.+..||+++++++
T Consensus 240 v~~~~~~-----~i~~~d~--~---g~~-~~~~~~~-~~~~~~~i~~-~~g-~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 240 FTEWGAN-----KIGRLTS--N---NII-EEYPIQI-KSAEPHGICF-DGE-TIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp EEETTTT-----EEEEEET--T---TEE-EEEECSS-SSCCEEEEEE-CSS-CEEEEETTTEEEEEEEC-----
T ss_pred EeccCCc-----eEEEECC--C---Cce-EEEeCCC-CCCccceEEe-cCC-CEEEEecCCcEEEEEcCcccCC
Confidence 7764332 4544433 1 111 1222221 1111233344 444 8888865667999999998764
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.01 E-value=3.2 Score=37.07 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=103.9
Q ss_pred EeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
++.+++.++....+..+. |||..+++...+-.... ......+.+.+. +.+-+++. . ...+.+|+..
T Consensus 99 ~~~s~~~l~~~~~d~~v~-lw~~~~~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~---~----dg~i~iwd~~ 164 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVY-VWNADSGSVSALAETDE-----STYVASVKWSHD-GSFLSVGL---G----NGLVDIYDVE 164 (401)
T ss_dssp EEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCT-----TCCEEEEEECTT-SSEEEEEE---T----TSCEEEEETT
T ss_pred EeecCCCEEEEECCCeEE-EeeCCCCcEeEeeecCC-----CCCEEEEEECCC-CCEEEEEC---C----CCeEEEEECc
Confidence 333334444344566788 99999988766543321 123455666663 33333221 1 3468889887
Q ss_pred CCcEE-EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeE
Q 017748 183 VNSWR-RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 183 t~~W~-~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
++.-. .+.... ..-..+..+|.+...+..+ ..|..+|+....-....+.... .....+... +|++
T Consensus 165 ~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 165 SQTKLRTMAGHQ----ARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHS---SEVCGLAWRSDGLQ 231 (401)
T ss_dssp TCCEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCS---SCEEEEEECTTSSE
T ss_pred CCeEEEEecCCC----CceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCC---CCeeEEEEcCCCCE
Confidence 76432 221111 1112344567655555444 3899999984332211111111 122233333 5666
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee---CCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV---RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~---~~~~~~yd~~t~~~~~v 337 (366)
.+.+..+. .+.+|-+... ..+..+.... ....-+.+..+++.++.... ++.+..||+++++....
T Consensus 232 l~s~~~d~-----~v~iwd~~~~------~~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 232 LASGGNDN-----VVQIWDARSS------IPKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 299 (401)
T ss_dssp EEEEETTS-----CEEEEETTCS------SEEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred EEEEeCCC-----eEEEccCCCC------CccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE
Confidence 66655554 8999988752 1222332111 11445666666656666543 67799999998876544
No 49
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.64 E-value=2.5 Score=37.03 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=66.7
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeec-CCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFD-DDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~-~~~~~~~l~iW~l~~ 282 (366)
+|...++..... ..|..||+.+.++..+ .++...........+... +|+..++.... .. .+.+|.++.
T Consensus 221 dg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~----~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD----GVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC----EEEEEEECT
T ss_pred CCCEEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC----EEEEEEEcC
Confidence 576444444322 3788899887766544 222111001112233333 56644444433 22 899999974
Q ss_pred CCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeE--EEEeCCCCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDL--CWYDLERHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~--~~yd~~t~~~~~v 337 (366)
. .+.+..+..++.... ..-+++.++|+.|++... ++.+ +.+|+++++++.+
T Consensus 292 ~--~g~~~~~~~~~~g~~--~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 292 T--NGTLTKVGYQLTGIH--PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp T--TCCEEEEEEEECSSC--CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred C--CCcEEEeeEecCCCC--CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 2 245666666654222 445677788866777653 4444 4478889998887
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.52 E-value=3.3 Score=35.61 Aligned_cols=197 Identities=9% Similarity=-0.069 Sum_probs=101.1
Q ss_pred eEEeecCCccEEEEEec-cccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC--c
Q 017748 109 LLALEDSRRNIMLLLNP-LTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN--S 185 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP-~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~--~ 185 (366)
+++.......+. +||. .+++...+.... + ......+.+.+ +.+-+.+ .. ...+.+|+..+. .
T Consensus 71 ~l~~~~~dg~i~-~wd~~~~~~~~~~~~~~--~---~~~v~~l~~~~--~~~l~s~-~~------d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 71 QIYVGTVQGEIL-KVDLIGSPSFQALTNNE--A---NLGICRICKYG--DDKLIAA-SW------DGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEEEEETTSCEE-EECSSSSSSEEECBSCC--C---CSCEEEEEEET--TTEEEEE-ET------TSEEEEECHHHHTTB
T ss_pred EEEEEcCCCeEE-EEEeccCCceEeccccC--C---CCceEEEEeCC--CCEEEEE-cC------CCeEEEEcccccccc
Confidence 455555566788 9999 888876665421 1 12345667776 4433332 11 446777776540 0
Q ss_pred -----EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCC-ce--eeeeCCCCccCCCCceEEEEEE-
Q 017748 186 -----WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKS-EE--FYQVPLPPIVGIEGYYILLEAL- 256 (366)
Q Consensus 186 -----W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~-~~--~~~i~lP~~~~~~~~~~~l~~~- 256 (366)
.+.+..+. ......++.+.+.-...+... ..|..+|+.+ .. ......+... ....+...
T Consensus 136 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~----~i~~i~~~~ 203 (342)
T 1yfq_A 136 VIAVKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLP 203 (342)
T ss_dssp CEEEEESCSSSSS--SCCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSS----CEEEEEECS
T ss_pred cccccCCeeeEEe--eCCceEEEEecCCcEEEEeCC------CeEEEEECCccccccceeeecCCCC----ceeEEEECC
Confidence 11111111 111112333333332333222 3799999987 33 3333322221 23334444
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC--------CceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG--------GGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--------~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
+|++.++...++ .+.+|.++..+..........+.... .....-+++..++..|+....++.+..|
T Consensus 204 ~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 204 KEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp GGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 466666666554 89999998742111111222222110 0014445667777566666767789999
Q ss_pred eCCCCeEEEe
Q 017748 328 DLERHRVRSI 337 (366)
Q Consensus 328 d~~t~~~~~v 337 (366)
|+++++....
T Consensus 279 d~~~~~~~~~ 288 (342)
T 1yfq_A 279 NLQTRKKIKN 288 (342)
T ss_dssp ETTTTEEEEE
T ss_pred cCccHhHhhh
Confidence 9999886443
No 51
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.91 E-value=4.3 Score=35.20 Aligned_cols=116 Identities=7% Similarity=0.023 Sum_probs=64.4
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC-CCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL-PPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
+|.+|........ ..|..||+.+++...+.. +... .....++.. +|+ |+++..... .+.+|.++.
T Consensus 50 dg~l~~~~~~~~~----~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~-----~v~v~~~~~ 117 (347)
T 3hfq_A 50 KDCLYSVDKEDDE----GGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKG-----TAEVMKIAA 117 (347)
T ss_dssp TCEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTT-----EEEEEEECT
T ss_pred CCeEEEEEecCCC----ceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCC-----EEEEEEeCC
Confidence 6887777764211 379999998777655522 2111 011223433 465 444433333 899999975
Q ss_pred CCCCCceEEEEEeccCCC--------ceeeEEEEecCCcEEEEEee-CCeEEEEeCC-CCeEEEe
Q 017748 283 YGVNDSWTKLATLLNVGG--------GNVKPLVYSRSEDKVLLHAV-RGDLCWYDLE-RHRVRSI 337 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~--------~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~-t~~~~~v 337 (366)
.+ ....+..+..... ....-+++.++|. +++... ++.+..||++ ++++..+
T Consensus 118 ~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 118 DG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp TS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CC---CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 32 3444444433210 0133366778885 665543 4569999998 6766654
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.56 E-value=4.5 Score=34.51 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=97.6
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++.......+. ++|..+++.......... ......+.+.+. +.+-++. .. ...+.+|+..++.-..
T Consensus 111 ~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~-~~------dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 111 TLIVGGEASTLS-IWDLAAPTPRIKAELTSS----APACYALAISPD-SKVCFSC-CS------DGNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEEEEESSSEEE-EEECCCC--EEEEEEECS----SSCEEEEEECTT-SSEEEEE-ET------TSCEEEEETTTTEEEE
T ss_pred EEEEEcCCCcEE-EEECCCCCcceeeecccC----CCceEEEEECCC-CCEEEEE-eC------CCcEEEEeCCCCceee
Confidence 344444556677 899888764332222111 113445666653 2332222 11 3458888887765432
Q ss_pred -ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEE
Q 017748 189 -IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 189 -~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
+...... -..+.+ +|.....+... ..|..+|+.+.+... +..+.. ...+... +|+..++
T Consensus 178 ~~~~~~~~----i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 178 QFQGHTDG----ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ------IFSLGYCPTGEWLAV 241 (337)
T ss_dssp EECCCSSC----EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC------EEEEEECTTSSEEEE
T ss_pred eeecccCc----eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc------eEEEEECCCCCEEEE
Confidence 2111111 112222 55555555433 379999998765433 233222 2223333 4666655
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
...+. .+.+|.++... ...+.... ....-+.+..++..++....++.+..||+++++....
T Consensus 242 ~~~~~-----~i~~~~~~~~~-------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 242 GMESS-----NVEVLHVNKPD-------KYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EETTS-----CEEEEETTSSC-------EEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EcCCC-----cEEEEECCCCC-------eEEEcCCc-cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 55444 79999887631 11221111 1144566677776666667778899999999887644
No 53
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.47 E-value=4.5 Score=34.42 Aligned_cols=199 Identities=9% Similarity=-0.005 Sum_probs=98.2
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
|+.......+++ .+||.+++...+..+. ...++.+++... -++. . ...+.+|+..++..+.
T Consensus 27 l~~~d~~~~~i~-~~d~~~~~~~~~~~~~--------~~~~i~~~~dG~--l~v~--~------~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 27 LLFVDIPAKKVC-RWDSFTKQVQRVTMDA--------PVSSVALRQSGG--YVAT--I------GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEETTTTEEE-EEETTTCCEEEEECSS--------CEEEEEEBTTSS--EEEE--E------TTEEEEEETTTTEEEE
T ss_pred EEEEECCCCEEE-EEECCCCcEEEEeCCC--------ceEEEEECCCCC--EEEE--E------CCeEEEEECCCCcEEE
Confidence 333333556788 9999998765543221 234566776533 2222 1 3468889998888876
Q ss_pred ccCCCccee-cCCcceEE--CCcEEEEEeeCCC-----CCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-
Q 017748 189 IQDFPYFWV-TGTCSVFV--NGALHWTAALNQD-----ADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG- 258 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~--~G~lYw~~~~~~~-----~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g- 258 (366)
+...+.... .....+.+ +|.+|+-...... ......|..+|.... ...+. ... ...--++.. +|
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~---~~pngi~~spdg~ 161 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQV---DISNGLDWSLDHK 161 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEE---SBEEEEEECTTSC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--ecc---ccccceEEcCCCC
Confidence 643321111 11112333 5886654433210 012247888988642 22221 011 011123333 45
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCceeeEE--EEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGGNVKPL--VYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~--~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
.||++..... .+.+|.++.. .........+ .... ....|- ++..+| .|++... ++++..||+++++.
T Consensus 162 ~lyv~~~~~~-----~i~~~~~d~~--~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 162 IFYYIDSLSY-----SVDAFDYDLQ--TGQISNRRSVYKLEK-EEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEEEEGGGT-----EEEEEEECTT--TCCEEEEEEEEECCG-GGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE
T ss_pred EEEEecCCCC-----cEEEEeccCC--CCcccCcEEEEECCC-CCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE
Confidence 4666655433 5666555421 1223222211 1111 012344 444566 7777764 45699999998775
Q ss_pred EEeeeec
Q 017748 335 RSIVEID 341 (366)
Q Consensus 335 ~~v~~~~ 341 (366)
.....+.
T Consensus 233 ~~~i~~p 239 (297)
T 3g4e_A 233 LQTVKLP 239 (297)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 4432655
No 54
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=92.44 E-value=3 Score=37.42 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|.++..+..+ ..|..+|+.+.+.... +.+...........+... +|++++....+. .+.+|-++..
T Consensus 133 ~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-----~v~~~d~~~~ 201 (433)
T 3bws_A 133 NTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN-----AVHVFDLKTL 201 (433)
T ss_dssp SSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT-----EEEEEETTTC
T ss_pred CCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC-----EEEEEECCCc
Confidence 45555544333 2599999998766543 221111111122223332 577777666554 8999988652
Q ss_pred CCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v 337 (366)
..+..+.... ....-+++..+++.+++.. .++.+..||+++++....
T Consensus 202 ------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 202 ------AYKATVDLTG-KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp ------CEEEEEECSS-SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ------eEEEEEcCCC-CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence 1223333211 1144566777786676665 466799999999887554
No 55
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.42 E-value=5 Score=34.81 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=99.3
Q ss_pred eceeEEee-cCCccEEEEEeccccce-eecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 106 CNGLLALE-DSRRNIMLLLNPLTKRH-RVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 106 ~~Gll~~~-~~~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
.++.+.+. .....+. |+|+.|++. ..+|... ...++.+++. . ++..... ....+.+++..+
T Consensus 52 ~~~~lyv~~~~~~~v~-viD~~t~~~~~~i~~~~--------~p~~i~~~~~--g-~lyv~~~-----~~~~v~~iD~~t 114 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIF-AIDINTFKEVGRITGFT--------SPRYIHFLSD--E-KAYVTQI-----WDYRIFIINPKT 114 (328)
T ss_dssp ETTEEEEEEGGGTEEE-EEETTTCCEEEEEECCS--------SEEEEEEEET--T-EEEEEEB-----SCSEEEEEETTT
T ss_pred ECCEEEEEEcCCCEEE-EEECcccEEEEEcCCCC--------CCcEEEEeCC--C-eEEEEEC-----CCCeEEEEECCC
Confidence 34544333 3456688 999999887 5564321 2334555443 3 4444321 145688899887
Q ss_pred CcEEE-ccCCCcce--ecCCcce-EECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEE-EC
Q 017748 184 NSWRR-IQDFPYFW--VTGTCSV-FVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEA-LG 257 (366)
Q Consensus 184 ~~W~~-~~~~~~~~--~~~~~~v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~-~~ 257 (366)
++-.. ++ ..... .....++ .-+|.+|....... ..|..+|+++.+.. .++..... .. +.. -+
T Consensus 115 ~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~~~-----~~v~viD~~t~~~~~~i~~g~~p----~~--i~~~~d 182 (328)
T 3dsm_A 115 YEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWSYQ-----NRILKIDTETDKVVDELTIGIQP----TS--LVMDKY 182 (328)
T ss_dssp TEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECTTC-----CEEEEEETTTTEEEEEEECSSCB----CC--CEECTT
T ss_pred CeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCCCC-----CEEEEEECCCCeEEEEEEcCCCc----cc--eEEcCC
Confidence 65332 21 11100 0011133 34566665543111 37999999987763 34443322 11 222 25
Q ss_pred CeEEEEEeecCCCCC---CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDD---RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~---~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
|+++++........+ ..-.|++++.. ..+-.+...++.... ..-+++..+++.+++... .++.+|++++++
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~--t~~v~~~~~~~~g~~--p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAE--TFTVEKQFKFKLGDW--PSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETT--TTEEEEEEECCTTCC--CEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CCEEEEECCCccCCccccCCceEEEEECC--CCeEEEEEecCCCCC--ceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 888877654311000 01245555542 122332223322211 444566666766766544 699999999886
Q ss_pred E
Q 017748 335 R 335 (366)
Q Consensus 335 ~ 335 (366)
.
T Consensus 257 ~ 257 (328)
T 3dsm_A 257 P 257 (328)
T ss_dssp C
T ss_pred e
Confidence 4
No 56
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=92.34 E-value=2.2 Score=38.45 Aligned_cols=124 Identities=17% Similarity=0.067 Sum_probs=71.3
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---C-C------CCccCCCCceEEEEEECCeEEEEEeecCCC--CCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---P-L------PPIVGIEGYYILLEALGGCLCLLCKFDDDD--DDR 273 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~-l------P~~~~~~~~~~~l~~~~g~L~l~~~~~~~~--~~~ 273 (366)
+|.++|.+..+ .+.++|+.++.-..+ . + +...........+..-+++||++....... ...
T Consensus 237 dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 237 AGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp TTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred CCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 78899987754 799999987653322 1 1 110000001112211257888876532110 011
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee--CCeEEEEeCCCCeEEEeeeecC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV--RGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~--~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.=+||++|- .++..+.+++...- ..-+++..++...++..+ ++.+.+||..|++..+-....+
T Consensus 310 ~~~V~viD~----~t~kv~~~i~vg~~--~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 310 SRFVVVLDA----KTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEEET----TTCCEEEEEEEEEE--ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CCEEEEEEC----CCCeEEEEEECCCC--cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 468999997 44677777776421 334677788753444433 5579999999998764435555
No 57
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.30 E-value=4.9 Score=34.40 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=80.6
Q ss_pred ccEEEEEEecC-CcEEEcc--CCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECC--Cceee---ee-CCC
Q 017748 173 YTEVAVFSLRV-NSWRRIQ--DFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLK--SEEFY---QV-PLP 241 (366)
Q Consensus 173 ~~~~~vyss~t-~~W~~~~--~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~--~~~~~---~i-~lP 241 (366)
...+.+|+..+ +...... ............+.+ +|...+++.... ..+..+|+. +.++. .+ .+|
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSC
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccC
Confidence 34688898877 6665322 110000001112222 465333333221 378888884 34442 22 344
Q ss_pred CccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee
Q 017748 242 PIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV 320 (366)
Q Consensus 242 ~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~ 320 (366)
...........+... +|+..++...... .+.+|.++..+ .++..+..++.... ..-+++..+|+.+++...
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~----~i~v~d~~~~~--~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACDRTAS----LITVFSVSEDG--SVLSKEGFQPTETQ--PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTT----EEEEEEECTTS--CCEEEEEEEECSSS--CCCEEECTTSSEEEEECT
T ss_pred ccccccCCccceEECCCCCEEEEEecCCC----EEEEEEEcCCC--CceEEeeeecCCCc--cceEEECCCCCEEEEecC
Confidence 432111112233333 3543333332222 89999998532 34677766665332 444677778866777763
Q ss_pred -CCeEEEE--eCCCCeEEEeeeec
Q 017748 321 -RGDLCWY--DLERHRVRSIVEID 341 (366)
Q Consensus 321 -~~~~~~y--d~~t~~~~~v~~~~ 341 (366)
++.+..| |+++++++.+-+++
T Consensus 297 ~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 297 KSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEEEEcCCCceeeEccccc
Confidence 4566666 88899998874444
No 58
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.25 E-value=6.1 Score=35.37 Aligned_cols=190 Identities=12% Similarity=0.012 Sum_probs=94.7
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|.|...+ ...++. .+++.++....+-..... ...++.+|+..+. +.... . ....+++++....
T Consensus 126 ~~~~ly~~D~~~~~I~-r~~~~g~~~~~~~~~~~~------~p~glavd~~~g~--lY~~d---~--~~~~I~~~~~dg~ 191 (386)
T 3v65_B 126 RRELVFWSDVTLDRIL-RANLNGSNVEEVVSTGLE------SPGGLAVDWVHDK--LYWTD---S--GTSRIEVANLDGA 191 (386)
T ss_dssp TTTEEEEEETTTTEEE-EEETTSCCEEEEECSSCS------CCCCEEEETTTTE--EEEEE---T--TTTEEEECBTTSC
T ss_pred CCCeEEEEeCCCCcEE-EEecCCCCcEEEEeCCCC------CccEEEEEeCCCe--EEEEc---C--CCCeEEEEeCCCC
Confidence 456665554 445677 888877665444222211 2235667765442 22211 1 1235566665443
Q ss_pred cEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCe
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGC 259 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~ 259 (366)
.-+.+..-. . ....++.+ +|.+||..... ...|..+|+....-..+.- ... ...--|+. .+++
T Consensus 192 ~~~~l~~~~--l-~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~-~~~---~~PnGlavd~~~~~ 259 (386)
T 3v65_B 192 HRKVLLWQS--L-EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD-THL---FWPNGLTIDYAGRR 259 (386)
T ss_dssp SCEEEECSS--C-SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEEC-SSC---SCEEEEEEEGGGTE
T ss_pred ceEEeecCC--C-CCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE-CCC---CCeeeEEEeCCCCE
Confidence 322221100 0 11224444 58999976443 1379999997644333311 111 01222444 3789
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR 335 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~ 335 (366)
||++..... .|+..+-.+.. +..+-...+ ..|.++.-.++.||+... ..++..+|..+++..
T Consensus 260 lY~aD~~~~-------~I~~~d~dG~~-----~~~~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 260 MYWVDAKHH-------VIERANLDGSH-----RKAVISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEETTTT-------EEEEECTTSCS-----CEEEECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEECCCC-------EEEEEeCCCCe-----eEEEEECCC--CCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence 999876432 45555543321 112211122 567666555558888764 446999996555543
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=92.01 E-value=5.7 Score=34.50 Aligned_cols=193 Identities=10% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. |+|..++++..+-....+ ......+.+.+. +.+-+.+ . ....+.+|+..++.+........
T Consensus 28 ~d~~v~-i~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~l~~~-~------~dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 28 NNHEVH-IYEKSGNKWVQVHELKEH----NGQVTGVDWAPD-SNRIVTC-G------TDRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp SSSEEE-EEEEETTEEEEEEEEECC----SSCEEEEEEETT-TTEEEEE-E------TTSCEEEEEEETTEEEEEEECCC
T ss_pred CCCEEE-EEeCCCCcEEeeeeecCC----CCcccEEEEeCC-CCEEEEE-c------CCCeEEEEECCCCeeeeeEEeec
Confidence 455677 888888753222222111 123455666663 3333322 1 13468899998887754322111
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-e---eeeCCCCccCCCCceEEEEEE-CCeEEEEEeec
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-F---YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFD 267 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~---~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~ 267 (366)
.. ..-..+.+ +|.....+..+ ..|..+|+.+.. + ..+..+... ....+... +|++.+++..+
T Consensus 95 ~~-~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 95 IN-RAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRS----TVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp CS-SCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCS----CEEEEEECTTSSEEEEEETT
T ss_pred CC-CceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCC----CeeEEEEcCCCCEEEEEcCC
Confidence 10 00111222 35544444433 246666766543 1 222222211 22333333 46665555544
Q ss_pred CCCCCCcEEEEEeccCC-----CCCce-------EEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 268 DDDDDRPWDLWVMKEYG-----VNDSW-------TKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~-----~~~~W-------~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
. .+.+|-+.... ....| ..+..+.... ....-+.+..++..++....++.+..||+++++..
T Consensus 164 g-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 164 F-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp S-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred C-----CEEEEEcccccccccccccccccccchhhheEecCCCC-CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 4 89999864211 01112 2233332111 11444566677766777777888999999888754
Q ss_pred Ee
Q 017748 336 SI 337 (366)
Q Consensus 336 ~v 337 (366)
..
T Consensus 238 ~~ 239 (372)
T 1k8k_C 238 AT 239 (372)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 60
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.68 E-value=11 Score=37.32 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=93.7
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~ 223 (366)
..++++|...+ +|... +. ....++++++....-+.+..-.. ....++.+ +|.|||...... .
T Consensus 473 P~GLAvD~~~~--~LY~t---D~--~~~~I~v~~ldG~~~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~-----~ 537 (791)
T 3m0c_C 473 PDGLAVDWIHS--NIYWT---DS--VLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTP-----A 537 (791)
T ss_dssp CCEEEEETTTT--EEEEE---ET--TTTEEEEEETTSSSEEEEEECTT---CCEEEEEEETTTTEEEEEECSSS-----C
T ss_pred cceeeeeecCC--cEEEE---ec--CCCeEEEEeCCCCeEEEEEeCCC---CCcceEEEecCCCCEEEecCCCC-----C
Confidence 44677777654 22222 11 13467778776555444421000 11235555 489999864331 3
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+++....-..+. .... ..-.-|+. .+|+||++.... -.||..+-.+. .....+ -....+
T Consensus 538 ~I~~~~~dG~~~~~lv-~~~l---~~P~GLavD~~~~~LYwaD~~~-------~~I~~~d~dG~-~~~~v~--~~~~~l- 602 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLV-TENI---QWPNGITLDLLSGRLYWVDSKL-------HSISSIDVNGG-NRKTIL--EDEKRL- 602 (791)
T ss_dssp EEEEEETTSCCEEEEE-CSSC---SCEEEEEEETTTTEEEEEETTT-------TEEEEEETTSC-SCEEEE--ECTTTT-
T ss_pred eEEEEecCCCceEEEE-eCCC---CCceEEEEecCCCeEEEEeCCC-------CcEEEEecCCC-ceEEEe--cCCCcc-
Confidence 7999999765443331 1111 12223443 378999986532 24666654432 211111 111223
Q ss_pred eeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecCc
Q 017748 302 NVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~sl 357 (366)
..|.++...++.||+.... ..|..+|..+++-..+ -..+ ....+.+.+|.+..
T Consensus 603 -~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~-l~~~-l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 603 -AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL-LAEN-LLSPEDMVLFHNLT 656 (791)
T ss_dssp -SSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEE-EECS-CSCCCCEEEESGGG
T ss_pred -CCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEE-eecC-CCCceeEeeecccc
Confidence 6777777666688887654 4689999877754433 1222 33445566666554
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.54 E-value=7 Score=34.59 Aligned_cols=198 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred eeEEeecCCccEEEEEeccccc------eeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 108 GLLALEDSRRNIMLLLNPLTKR------HRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~------~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
.+++....+..+. +||..+++ ........... ......+.+.+..+.+ ++... ....+.+|+.
T Consensus 127 ~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-l~~~~------~dg~v~iwd~ 195 (416)
T 2pm9_A 127 NVLASGGNNGEIF-IWDMNKCTESPSNYTPLTPGQSMSS---VDEVISLAWNQSLAHV-FASAG------SSNFASIWDL 195 (416)
T ss_dssp TBEEEECSSSCEE-BCBTTTTSSCTTTCCCBCCCCSCCS---SCCCCEEEECSSCTTE-EEEES------SSSCEEEEET
T ss_pred CEEEEEcCCCeEE-EEECCCCccccccccccccccccCC---CCCeeEEEeCCCCCcE-EEEEc------CCCCEEEEEC
Confidence 3444444556677 88888776 22111111111 1133455666543333 22221 1446888888
Q ss_pred cCCcEEEccCCCcce---ecCCcceEE--CC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCC-CccCCCCceEEEE
Q 017748 182 RVNSWRRIQDFPYFW---VTGTCSVFV--NG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLP-PIVGIEGYYILLE 254 (366)
Q Consensus 182 ~t~~W~~~~~~~~~~---~~~~~~v~~--~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP-~~~~~~~~~~~l~ 254 (366)
.++.-...-...... ...-..+.+ +| .+...+..+.. ...|..+|+.+..-....+. .. ......+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~---~~~v~~~~ 269 (416)
T 2pm9_A 196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANTPLQTLNQGH---QKGILSLD 269 (416)
T ss_dssp TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTSCSBCCCSCC---SSCEEEEE
T ss_pred CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCCCcEEeecCc---cCceeEEE
Confidence 876543221111000 000112222 23 34444433210 01588889887532111222 11 11233344
Q ss_pred EE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC-cEEEEEeeCCeEEEEeCCC
Q 017748 255 AL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE-DKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 255 ~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g-~~i~~~~~~~~~~~yd~~t 331 (366)
.. +|++.+....+. .+.+|-++.. ..+..+.... ....-+.+.+++ ..++....++.+..||+.+
T Consensus 270 ~s~~~~~~l~s~~~dg-----~v~~wd~~~~------~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDN-----TVLLWNPESA------EQLSQFPARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSSCSSCEEEEESSS-----EEEEECSSSC------CEEEEEECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred eCCCCCCeEEEEeCCC-----CEEEeeCCCC------ccceeecCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 43 566666666555 8999987752 2334443211 113345666766 4555556677899999988
Q ss_pred CeE
Q 017748 332 HRV 334 (366)
Q Consensus 332 ~~~ 334 (366)
.+-
T Consensus 338 ~~~ 340 (416)
T 2pm9_A 338 LTN 340 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 62
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.54 E-value=4.9 Score=34.42 Aligned_cols=144 Identities=8% Similarity=0.085 Sum_probs=74.2
Q ss_pred ccEEEEEEec-CCcEEEccCCCcceecCCcceEE--CCc-EEEEEeeCCCCCCCcEEEEEECC--Cceeeee-CCCCccC
Q 017748 173 YTEVAVFSLR-VNSWRRIQDFPYFWVTGTCSVFV--NGA-LHWTAALNQDADRNDIIIAFDLK--SEEFYQV-PLPPIVG 245 (366)
Q Consensus 173 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~-lYw~~~~~~~~~~~~~i~~fD~~--~~~~~~i-~lP~~~~ 245 (366)
...+.+|+.. ++..+.+...+.. .....+.+ +|. +|...... ..|..||+. ++++..+ .++...
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPE------FRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred CCeEEEEEECCCCcEEEeeeEecC--CCCceEEECCCCCEEEEeecCC------CeEEEEEecCCCCceeeccccccCC-
Confidence 3467777774 4555443221111 11112333 565 44444331 267777776 6666543 222211
Q ss_pred CCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCe
Q 017748 246 IEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGD 323 (366)
Q Consensus 246 ~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~ 323 (366)
....+... +|+..++...... .+.+|.+++ + ........+..... ..-+++..+|+.+++.. .++.
T Consensus 85 ---~~~~~~~s~dg~~l~~~~~~~~----~i~~~d~~~-~--~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 85 ---SLTHISTDHQGQFVFVGSYNAG----NVSVTRLED-G--LPVGVVDVVEGLDG--CHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp ---CCSEEEECTTSSEEEEEETTTT----EEEEEEEET-T--EEEEEEEEECCCTT--BCCCEECTTSSEEEEEEGGGTE
T ss_pred ---CCcEEEEcCCCCEEEEEecCCC----eEEEEECCC-C--ccccccccccCCCC--ceEEEECCCCCEEEEecCCCCE
Confidence 11123332 4554433433222 799998862 2 23444455543322 44456777886777766 5677
Q ss_pred EEEEeCCC-CeEEEe
Q 017748 324 LCWYDLER-HRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t-~~~~~v 337 (366)
+..||+.+ +++..+
T Consensus 153 v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred EEEEEecCCCceeee
Confidence 99999998 777644
No 63
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.17 E-value=7.4 Score=34.15 Aligned_cols=196 Identities=11% Similarity=-0.028 Sum_probs=90.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|.++.......+. |||..+++...........+ ......+.+.|. +.+ ++... ....+.+++..++.-
T Consensus 105 d~~~l~~s~dg~v~-lWd~~~~~~~~~~~~~~~~h--~~~V~~v~~spd-g~~-l~sgs------~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 105 EKGILVASDSGAVE-LWEILEKESLLVNKFAKYEH--DDIVKTLSVFSD-GTQ-AVSGG------KDFSVKVWDLSQKAV 173 (357)
T ss_dssp TTEEEEEETTSCEE-EC--------CCCCEEECCC--SSCEEEEEECSS-SSE-EEEEE------TTSCEEEEETTTTEE
T ss_pred CCCEEEEECCCEEE-EeeccccceeEEEeeccCCC--CCCEEEEEECCC-CCE-EEEEe------CCCeEEEEECCCCcE
Confidence 45454444556788 99998887554433221111 123445666553 223 22222 144578888877643
Q ss_pred EE-ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE--CCeE
Q 017748 187 RR-IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL--GGCL 260 (366)
Q Consensus 187 ~~-~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~--~g~L 260 (366)
.. +..-... -.++.+ +|.-+.++...+ ..|..+|+++.+.... ...... .....+... ++.+
T Consensus 174 ~~~~~~h~~~----v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 174 LKSYNAHSSE----VNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKPATRIDFCASD---TIPTSVTWHPEKDDT 241 (357)
T ss_dssp EEEECCCSSC----EEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCC---SCEEEEEECTTSTTE
T ss_pred EEEEcCCCCC----EEEEEEccCCCceeeeeccC-----CceEEEECCCCceeeeeeecccc---ccccchhhhhcccce
Confidence 22 1110000 112222 232222332222 2588889887654322 222211 122233332 3556
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~~~~~v 337 (366)
.+....+. .+.+|-+.... .+..+.... +...-+++..+++.++. ...++.+.+||+++++....
T Consensus 242 la~g~~d~-----~i~~wd~~~~~------~~~~~~~~~-~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 242 FACGDETG-----NVSLVNIKNPD------SAQTSAVHS-QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp EEEEESSS-----CEEEEESSCGG------GCEEECCCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEeeccc-----ceeEEECCCCc------EeEEEeccc-eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 55555444 89999876531 122232111 11344566666645544 45567799999999986655
No 64
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=91.16 E-value=7.3 Score=34.10 Aligned_cols=196 Identities=10% Similarity=-0.026 Sum_probs=96.4
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
++.++....+..+. |||..+++...........+ ......+.+.|. +.+ ++... ....+.+++.+++.=
T Consensus 93 d~~l~~~s~dg~v~-lWd~~~~~~~~~~~~~~~~H--~~~V~~v~~spd-g~~-l~sgs------~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 93 ERGILVASDSGAVE-LWELDENETLIVSKFCKYEH--DDIVSTVSVLSS-GTQ-AVSGS------KDICIKVWDLAQQVV 161 (344)
T ss_dssp TTEEEEEETTSEEE-EEEECTTSSCEEEEEEEECC--SSCEEEEEECTT-SSE-EEEEE------TTSCEEEEETTTTEE
T ss_pred CCeEEEEECCCEEE-EEeccCCCceeEeeccccCC--CCCEEEEEECCC-CCE-EEEEe------CCCeEEEEECCCCcE
Confidence 45555555566788 99998887554332211111 123445666654 233 22221 134578888877542
Q ss_pred E-EccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE--CCeE
Q 017748 187 R-RIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL--GGCL 260 (366)
Q Consensus 187 ~-~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~--~g~L 260 (366)
. .+..-... -.++.+ +|.-+.++...+ ..|..+|+++.+... +..+... .....+... ++++
T Consensus 162 ~~~~~~h~~~----V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 162 LSSYRAHAAQ----VTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPG---YLPTSLAWHPQQSEV 229 (344)
T ss_dssp EEEECCCSSC----EEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEECC----C---CCEEEEEECSSCTTE
T ss_pred EEEEcCcCCc----eEEEEecCCCCCceeeeccc-----cccccccccccceeeeeecceee---ccceeeeecCCCCcc
Confidence 2 11110000 011222 343233333322 268889998765433 3332221 112223332 4566
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+..+. .+.||-+... ..+..+.... ....-+++.++|..++. ...|+.+..||.++++..+.
T Consensus 230 l~sg~~dg-----~v~~wd~~~~------~~~~~~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 230 FVFGDENG-----TVSLVDTKST------SCVLSSAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp EEEEETTS-----EEEEEESCC--------CCEEEECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred eEEeccCC-----cEEEEECCCC------cEEEEEcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 66555444 8999977652 1223332111 11444566677645444 55677799999999986554
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.73 E-value=6.7 Score=32.95 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred EEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+.. .+..+.. ....+... +|+ .++...+. .+.+|-+... + .+..+.... .
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~----~--~~~~~~~~~-~ 267 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHES-----FVYCIKLLPNGD-IVSCGEDR-----TVRIWSKENG----S--LKQVITLPA-I 267 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSC-EEEEETTS-----EEEEECTTTC----C--EEEEEECSS-S
T ss_pred eEEEEECCchhhhhhhhcCCc-----eEEEEEEecCCC-EEEEecCC-----EEEEEECCCC----c--eeEEEeccC-c
Confidence 7999999876543 2232221 23334444 344 33333333 8999988762 1 223332211 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
...-+.+..++ .++....++.+..||++++++....++++
T Consensus 268 ~i~~~~~~~~~-~~~~~~~dg~i~iw~~~~~~~~~~~~~~~ 307 (313)
T 3odt_A 268 SIWSVDCMSNG-DIIVGSSDNLVRIFSQEKSRWASEDEIKG 307 (313)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEESCGGGCCC------
T ss_pred eEEEEEEccCC-CEEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence 14445666777 56667777789999999998765534443
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.61 E-value=14 Score=36.31 Aligned_cols=190 Identities=11% Similarity=0.061 Sum_probs=98.0
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-c
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-S 185 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~ 185 (366)
+.++........+. |||..+++....-... ......+.+.|.. .+ ++... ....+.+|+..++ .
T Consensus 67 ~~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~-l~~~~------~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 67 KNWIIVGSDDFRIR-VFNYNTGEKVVDFEAH------PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENNWA 131 (814)
T ss_dssp GTEEEEEETTSEEE-EEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSEEEEEEGGGTSE
T ss_pred CCEEEEEeCCCeEE-EEECCCCcEEEEEecC------CCCEEEEEEeCCC-CE-EEEEc------CCCEEEEEECCCCce
Confidence 33444444566778 9998888754322111 1134455665542 23 22221 1456888888765 2
Q ss_pred EEE-ccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE---C
Q 017748 186 WRR-IQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL---G 257 (366)
Q Consensus 186 W~~-~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~---~ 257 (366)
... +..-... -.++.. +|.....+..+ ..|..+|+.+...... ..+... ....+... +
T Consensus 132 ~~~~~~~~~~~----v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~ 197 (814)
T 3mkq_A 132 LEQTFEGHEHF----VMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQER----GVNYVDYYPLPD 197 (814)
T ss_dssp EEEEEECCSSC----EEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTT----CCCEEEECCSTT
T ss_pred EEEEEcCCCCc----EEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCC----CEEEEEEEECCC
Confidence 221 1111100 112222 34444444433 3799999876543222 222111 11122222 5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
|.+.+++..+. .+.+|-++. ...+..+.... +...-+.+.++|..++....++.+..||+.+++....
T Consensus 198 ~~~l~~~~~dg-----~i~~~d~~~------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 198 KPYMITASDDL-----TIKIWDYQT------KSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp CCEEEEECTTS-----EEEEEETTT------TEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CCEEEEEeCCC-----EEEEEECCC------CcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 66655555444 899997765 12233333211 1145566777886666667677899999999776544
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=90.50 E-value=9.6 Score=34.36 Aligned_cols=193 Identities=9% Similarity=0.047 Sum_probs=104.5
Q ss_pred CceEEEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEE
Q 017748 98 KFGFIIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVA 177 (366)
Q Consensus 98 ~~~~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~ 177 (366)
..+..++..+.+++....+..+. +||..+++...--.. + .....++.+++ .+ ++... ....+.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~--h----~~~v~~~~~~~---~~-l~s~s------~dg~i~ 222 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLK-VWNAETGECIHTLYG--H----TSTVRCMHLHE---KR-VVSGS------RDATLR 222 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEECC--C----SSCEEEEEEET---TE-EEEEE------TTSEEE
T ss_pred CCEEEEEecCCEEEEEeCCCeEE-EEECCcCcEEEEECC--C----CCcEEEEEecC---CE-EEEEe------CCCEEE
Confidence 33444555566776666677888 999988765432111 1 11233455542 33 22222 145688
Q ss_pred EEEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEE
Q 017748 178 VFSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEA 255 (366)
Q Consensus 178 vyss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~ 255 (366)
+|+..++.-.. +..-. ....++..+|.....+..+ ..|..+|+.+.+... +..... ....+ .
T Consensus 223 ~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-----~v~~~-~ 286 (445)
T 2ovr_B 223 VWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTLQGHTN-----RVYSL-Q 286 (445)
T ss_dssp EEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEECCCSS-----CEEEE-E
T ss_pred EEECCCCcEEEEEcCCc----ccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEecCCCC-----ceEEE-E
Confidence 88887654321 11111 1112344577766665544 368899998765432 232221 12222 2
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
.+|...+.+..++ .+.+|-+... ..+..+.... ..+.++..+++.++....++.+..||+++++..
T Consensus 287 ~~~~~l~~~~~d~-----~i~i~d~~~~------~~~~~~~~~~---~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 287 FDGIHVVSGSLDT-----SIRVWDVETG------NCIHTLTGHQ---SLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp ECSSEEEEEETTS-----CEEEEETTTC------CEEEEECCCC---SCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred ECCCEEEEEeCCC-----eEEEEECCCC------CEEEEEcCCc---ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3777666666555 8999988762 1233333211 223333345556666677778999999888754
Q ss_pred Ee
Q 017748 336 SI 337 (366)
Q Consensus 336 ~v 337 (366)
..
T Consensus 353 ~~ 354 (445)
T 2ovr_B 353 QT 354 (445)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 68
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=90.36 E-value=8.7 Score=33.65 Aligned_cols=179 Identities=9% Similarity=-0.108 Sum_probs=84.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
....+. |||..+++....-... ......+.+.+..+.+- +.... ...+.+++.+++.-........
T Consensus 159 ~dg~v~-iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~~~-~s~~~------dg~v~~wd~~~~~~~~~~~~~~ 224 (357)
T 4g56_B 159 KDFSVK-VWDLSQKAVLKSYNAH------SSEVNCVAACPGKDTIF-LSCGE------DGRILLWDTRKPKPATRIDFCA 224 (357)
T ss_dssp TTSCEE-EEETTTTEEEEEECCC------SSCEEEEEECTTCSSCE-EEEET------TSCEEECCTTSSSCBCBCCCTT
T ss_pred CCCeEE-EEECCCCcEEEEEcCC------CCCEEEEEEccCCCcee-eeecc------CCceEEEECCCCceeeeeeecc
Confidence 455677 8888887754321111 11233455555433332 22211 3357777776654221111100
Q ss_pred ceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CC-eEEEEEeecC
Q 017748 195 FWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDD 268 (366)
Q Consensus 195 ~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~ 268 (366)
.. ....++.. ++.+...+..+ ..|..+|+.+.+-. .+..+.. ....+... +| ++.+.+..+.
T Consensus 225 ~~-~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 225 SD-TIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQ-----NITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CC-SCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSS-----CEEEEEECSSSSCCEEEEETTS
T ss_pred cc-ccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEeccce-----eEEEEEEcCCCCCEEEEEeCCC
Confidence 00 11112322 23444443333 36888999876532 2232222 22233333 44 4444444343
Q ss_pred CCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEEeeCCeEEEEeCCCC
Q 017748 269 DDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 269 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.+.||-++. -..+..+..... ..-+++.+ ++..|+-...|+.+..||+.+.
T Consensus 293 -----~i~iwd~~~------~~~~~~~~H~~~--V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 293 -----TVAVLDADF------SEVFRDLSHRDF--VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -----CEEEECTTS------CEEEEECCCSSC--EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred -----EEEEEECCC------CcEeEECCCCCC--EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 899997654 122333332221 44456665 5645555667778999998654
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.03 E-value=9.8 Score=33.73 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=99.5
Q ss_pred eEEeecCCccEEEEEeccccceeecC-CcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLP-TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
+++....+..+. |||..+++...-. .+.............+.+.|....+ ++.... ...+.+++..++...
T Consensus 96 ~l~s~s~dg~v~-vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-l~s~~~------dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 96 VIASGSEDCTVM-VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV-LLSAGC------DNVILVWDVGTGAAV 167 (402)
T ss_dssp EEEEEETTSEEE-EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE-EEEEET------TSCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEE-EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE-EEEEcC------CCEEEEEECCCCCcc
Confidence 444444556677 8998876432100 0000000001234456666653332 332221 446889998877553
Q ss_pred E-c--cCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee--CCCCccCCCCceEEEEEE-CCe
Q 017748 188 R-I--QDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV--PLPPIVGIEGYYILLEAL-GGC 259 (366)
Q Consensus 188 ~-~--~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~-~g~ 259 (366)
. + ...... -.++.+ +|.....+..+ ..|..+|+.+.+.... ..+... ....+... +|+
T Consensus 168 ~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 233 (402)
T 2aq5_A 168 LTLGPDVHPDT----IYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGT----RPVHAVFVSEGK 233 (402)
T ss_dssp EEECTTTCCSC----EEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSS----SCCEEEECSTTE
T ss_pred EEEecCCCCCc----eEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCC----cceEEEEcCCCc
Confidence 2 2 111111 112222 46555555443 3799999998665332 222211 11223333 566
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCe--EEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHR--VRS 336 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~--~~~ 336 (366)
+.+++.... ....+.+|-+..... =.....++.... ..-+.+..++..+++.. .++.+.+||+++++ ...
T Consensus 234 ~l~~g~~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~--v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 234 ILTTGFSRM--SERQVALWDTKHLEE---PLSLQELDTSSG--VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp EEEEEECTT--CCEEEEEEETTBCSS---CSEEEECCCCSS--CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred EEEEeccCC--CCceEEEEcCccccC---CceEEeccCCCc--eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 666553110 112899998876321 111222322221 44456777886676665 46679999999987 655
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 307 l 307 (402)
T 2aq5_A 307 L 307 (402)
T ss_dssp E
T ss_pred e
Confidence 5
No 70
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=89.88 E-value=16 Score=35.83 Aligned_cols=145 Identities=14% Similarity=0.021 Sum_probs=81.1
Q ss_pred ccEEEEEEecCC--c-EEEccCCCcceecCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCC--ceeeeeCCCCccCC
Q 017748 173 YTEVAVFSLRVN--S-WRRIQDFPYFWVTGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKS--EEFYQVPLPPIVGI 246 (366)
Q Consensus 173 ~~~~~vyss~t~--~-W~~~~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~--~~~~~i~lP~~~~~ 246 (366)
...+.+++..++ . |+.+....... ...+. -++.+|+.+.... ....|...|+++ +.|..+- |...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~-~~~~-- 363 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQ---WDFVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVV-PESK-- 363 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSC---EEEEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEE-CCCS--
T ss_pred cceEEEEECCCCCCcccEEecCCCCce---EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEe-cCCC--
Confidence 446667777665 5 77664322111 11222 3456776665431 124799999988 5676653 3222
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----C
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----G 322 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~ 322 (366)
.....+...++.|++....+. ...||.++-.+ . ....+.....+....+++..+++.|++.... .
T Consensus 364 -~~l~~~~~~~~~lv~~~~~dg-----~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 364 -DNLESVGIAGNRLFASYIHDA-----KSQVLAFDLDG--K---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp -SEEEEEEEEBTEEEEEEEETT-----EEEEEEEETTS--C---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred -CeEEEEEEECCEEEEEEEECC-----EEEEEEEeCCC--C---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 112233445888888777665 77888887422 1 2334443211123333444566677776442 3
Q ss_pred eEEEEeCCCCeEEEe
Q 017748 323 DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ~~~~yd~~t~~~~~v 337 (366)
.++.||+.+++.+.+
T Consensus 433 ~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 433 TVLALDPATAKTTPW 447 (741)
T ss_dssp EEEEEETTTTEEEEC
T ss_pred EEEEEECCCCcEEEE
Confidence 599999999987655
No 71
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=89.74 E-value=16 Score=35.91 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=97.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|-|.+......++ .+||.|+++..++..... .....++..|+.. + +.+.. ...+..|+..++.|
T Consensus 417 ~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g---~-lwigt------~~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 417 EGNLWFGTYLGNIS-YYNTRLKKFQIIELEKNE----LLDVRVFYEDKNK---K-IWIGT------HAGVFVIDLASKKV 481 (781)
T ss_dssp TSCEEEEETTEEEE-EECSSSCEEEECCSTTTC----CCCEEEEEECTTS---E-EEEEE------TTEEEEEESSSSSC
T ss_pred CCCEEEEeccCCEE-EEcCCCCcEEEeccCCCC----CCeEEEEEECCCC---C-EEEEE------CCceEEEeCCCCeE
Confidence 34333333234566 778887777766543111 1123334444321 1 22222 24678888888888
Q ss_pred EEccCCCc-ce-ecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-ECCeEE
Q 017748 187 RRIQDFPY-FW-VTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LGGCLC 261 (366)
Q Consensus 187 ~~~~~~~~-~~-~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~g~L~ 261 (366)
+.....+. .. .....+++. +|. .|++..+ ..+..||..++++..+..+.... ......+.+ .+|.|+
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFG------GGVGIYTPDMQLVRKFNQYEGFC-SNTINQIYRSSKGQMW 553 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCC-EEEEESS------SCEEEECTTCCEEEEECTTTTCS-CSCEEEEEECTTSCEE
T ss_pred EecccCcccccccceeEEEEEcCCCC-EEEEEcC------CCEEEEeCCCCeEEEccCCCCCC-CCeeEEEEECCCCCEE
Confidence 76543220 00 011113333 355 4666543 15899999999988875443331 112334444 367888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEe--cCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYS--RSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+. . .+ +..++.. ..++... .... .+....+.++. .+| .|.+....+ +..||+++++++..
T Consensus 554 i~T~-~------Gl-v~~~d~~--~~~~~~~-~~~~-gl~~~~i~~i~~d~~g-~lW~~t~~G-l~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 554 LATG-E------GL-VCFPSAR--NFDYQVF-QRKE-GLPNTHIRAISEDKNG-NIWASTNTG-ISCYITSKKCFYTY 617 (781)
T ss_dssp EEET-T------EE-EEESCTT--TCCCEEE-CGGG-TCSCCCCCEEEECSSS-CEEEECSSC-EEEEETTTTEEEEE
T ss_pred EEEC-C------Cc-eEEECCC--CCcEEEc-cccC-CCCCceEEEEEECCCC-CEEEEcCCc-eEEEECCCCceEEe
Confidence 7654 2 22 1233321 1223222 1111 11011122333 344 788887655 99999999998877
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=89.48 E-value=9.2 Score=32.60 Aligned_cols=93 Identities=9% Similarity=0.028 Sum_probs=49.7
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC----
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV---- 298 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---- 298 (366)
.|..+|+.+.+.... ..+. ....+....+...++...+. .+.||-++.. ..+..+...
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~d~-----~i~iwd~~~~------~~~~~~~~~~~~~ 300 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGD------IINALCFSPNRYWLCAATGP-----SIKIWDLEGK------IIVDELKQEVIST 300 (340)
T ss_dssp EEEEEETTTTEEEEEEECSS------CEEEEEECSSSSEEEEEETT-----EEEEEETTTT------EEEEEECCC----
T ss_pred eEEEEEeccCceeeeecCCc------eEEeeecCCCCceeeccCCC-----EEEEEECCCC------eEEEeccccceee
Confidence 788899987654322 2221 12233333444444455444 8899977642 111112110
Q ss_pred ---C-CceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 299 ---G-GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 299 ---~-~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
. .....-+++.++|..|+-...|+.+..||++|++
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0 0113445677788566666677789999999875
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.45 E-value=11 Score=33.64 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=104.3
Q ss_pred EEEe-eeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEE
Q 017748 101 FIIG-SCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVF 179 (366)
Q Consensus 101 ~~~~-s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vy 179 (366)
.+++ |++++|.+.. +..++ |||..|++...+-....+ ......+.+.+. +.|-+++- ....+.++
T Consensus 109 ~~l~wS~~n~lAvgl-d~tV~-lWd~~tg~~~~~~~~~~~----~~~V~sv~fspd-g~~lasgs-------~Dg~v~iW 174 (420)
T 4gga_A 109 NLVDWSSGNVLAVAL-DNSVY-LWSASSGDILQLLQMEQP----GEYISSVAWIKE-GNYLAVGT-------SSAEVQLW 174 (420)
T ss_dssp BCEEECTTSEEEEEE-TTEEE-EEETTTCCEEEEEECCST----TCCEEEEEECTT-SSEEEEEE-------TTSCEEEE
T ss_pred eeEEECCCCEEEEEe-CCEEE-EEECCCCCEEEEEEecCC----CCcEEEEEECCC-CCEEEEEE-------CCCeEEEE
Confidence 3444 3466665553 56799 999999987765433222 123456666664 34433332 14568888
Q ss_pred EecCCcEE-EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-C
Q 017748 180 SLRVNSWR-RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-G 257 (366)
Q Consensus 180 ss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~ 257 (366)
+..++.-. ....-. ....++..+|.+-..+... ..+..+|..........+.... .....+... +
T Consensus 175 d~~~~~~~~~~~~h~----~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~---~~~~~~~~~~~ 241 (420)
T 4gga_A 175 DVQQQKRLRNMTSHS----ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPD 241 (420)
T ss_dssp ETTTTEEEEEECCCS----SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCS---SCEEEEEECTT
T ss_pred EcCCCcEEEEEeCCC----CceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecccc---cceeeeeecCC
Confidence 88776432 111111 1112345566655444433 3788888876544332222211 112222332 4
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe---eCCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA---VRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~---~~~~~~~yd~~t~~~ 334 (366)
|+..+....+. .+.||...... ..+..+....... ....-+++...+..++... .|+.+..||+.+++.
T Consensus 242 g~~l~s~~~D~-----~v~i~~~~~~~--~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~ 313 (420)
T 4gga_A 242 GRHLASGGNDN-----LVNVWPSAPGE--GGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313 (420)
T ss_dssp SSEEEEEETTS-----CEEEEESSCCS--SCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE
T ss_pred CCeeeeeeccc-----cceEEeecccc--ccceeeeeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc
Confidence 66555555444 89999887632 2222222222111 1134445555444454432 355699999999887
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
...
T Consensus 314 ~~~ 316 (420)
T 4gga_A 314 LSA 316 (420)
T ss_dssp EEE
T ss_pred cee
Confidence 655
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=89.36 E-value=10 Score=32.87 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC--CeE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER--HRV 334 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t--~~~ 334 (366)
+|++.++...+. .+.+|-++... .+..+.... ....-+++..++ .++....++.+..||+.+ ++|
T Consensus 213 ~~~~l~~~~~d~-----~i~i~d~~~~~------~~~~~~~~~-~~v~~~~~~~~~-~~l~~~~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 213 NGSRVAWVSHDS-----TVCLADADKKM------AVATLASET-LPLLAVTFITES-SLVAAGHDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp SSSEEEEEETTT-----EEEEEEGGGTT------EEEEEECSS-CCEEEEEEEETT-EEEEEETTSSCEEEEEETTTTEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCc------eeEEEccCC-CCeEEEEEecCC-CEEEEEeCCeEEEEEccCcCceE
Confidence 455555555444 89999987631 233333221 113445666777 666666777799999999 888
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
+.+
T Consensus 280 ~~~ 282 (372)
T 1k8k_C 280 SFG 282 (372)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 75
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=89.28 E-value=8.8 Score=32.34 Aligned_cols=142 Identities=8% Similarity=-0.032 Sum_probs=80.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.=...-.++.. .+..+ ...++.+|-++... ..+.+||.++.+- ..++.|...
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~--~FgeGit~~g~~ly~ltw~~------~~v~v~D~~t~~~~~ti~~~~eG------ 129 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKR--YFGEGISDWKDKIVGLTWKN------GLGFVWNIRNLRQVRSFNYDGEG------ 129 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTT--CCEEEEEEETTEEEEEESSS------SEEEEEETTTCCEEEEEECSSCC------
T ss_pred CceEEEEECCCCcEEEEEecCCc--cceeEEEEeCCEEEEEEeeC------CEEEEEECccCcEEEEEECCCCc------
Confidence 45788888888753222122221 11223 34567888876554 4899999987554 556665422
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceee--EEEEecCCcEEEEEee-CCeEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVK--PLVYSRSEDKVLLHAV-RGDLC 325 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~--~~~~~~~g~~i~~~~~-~~~~~ 325 (366)
.-++.-+++|++... . =.||.+|... =..+.+|..... .... -+.+ .+| +|+.... .+.+.
T Consensus 130 ~glt~dg~~L~~SdG-s-------~~i~~iDp~T----~~v~~~I~V~~~g~~~~~lNELe~-~~G-~lyan~w~~~~I~ 195 (262)
T 3nol_A 130 WGLTHNDQYLIMSDG-T-------PVLRFLDPES----LTPVRTITVTAHGEELPELNELEW-VDG-EIFANVWQTNKIV 195 (262)
T ss_dssp CCEEECSSCEEECCS-S-------SEEEEECTTT----CSEEEEEECEETTEECCCEEEEEE-ETT-EEEEEETTSSEEE
T ss_pred eEEecCCCEEEEECC-C-------CeEEEEcCCC----CeEEEEEEeccCCccccccceeEE-ECC-EEEEEEccCCeEE
Confidence 224444667777653 2 1377777531 223444443211 0011 1233 255 8887764 45699
Q ss_pred EEeCCCCeEEEeeeecC
Q 017748 326 WYDLERHRVRSIVEIDD 342 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~~ 342 (366)
..|++|++.....++.+
T Consensus 196 vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EECTTTCBEEEEEECTT
T ss_pred EEECCCCcEEEEEECCc
Confidence 99999999876657753
No 76
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=89.22 E-value=17 Score=35.27 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=99.2
Q ss_pred cEEEEEecccccee--ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 118 NIMLLLNPLTKRHR--VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 118 ~~~~V~NP~t~~~~--~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+++ +++.-|++.. .+-..+.. ........+.+. ++|-++.... . .....+.+++..++.|+.+......
T Consensus 203 ~v~-~~~l~t~~~~~~lv~~~~~~----~~~~~~~~~SpD-G~~l~~~~~~-~--~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 203 TIR-YHTLGTEPSKDTVVHERTGD----PTTFLQSDLSRD-GKYLFVYILR-G--WSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp EEE-EEETTSCGGGCEEEECCCCC----TTCEEEEEECTT-SCCEEEEEEE-T--TTEEEEEEECTTCSSCEEEEECSSC
T ss_pred EEE-EEECCCCchhceEEEecCCC----CEEEEEEEECCC-CCEEEEEEeC-C--CCceEEEEEcCCCCceEEeecCCCc
Confidence 377 8888877632 22221111 112334455554 3454444332 1 0234555555556778776432211
Q ss_pred eecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce---eeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 196 WVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE---FYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 196 ~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
....+.-+|.+|+.+.... ....|..+|+.+.. |..+..+... .....+...+++|++....+.
T Consensus 274 ---~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~~lv~~~~~dg---- 340 (695)
T 2bkl_A 274 ---KYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSS---ASLLSVSIVGGHLSLEYLKDA---- 340 (695)
T ss_dssp ---CEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSS---CEEEEEEEETTEEEEEEEETT----
T ss_pred ---eEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCC---CeEEEEEEECCEEEEEEEECC----
Confidence 1223345677666554221 12589999997654 6655333211 012223445888888777665
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
...||.++-.+ . ....+.....+....+++..+++.+++.... ..++.||+++++.+.+
T Consensus 341 -~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 341 -TSEVRVATLKG--K---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp -EEEEEEEETTC--C---EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -EEEEEEEeCCC--C---eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 78889887422 1 2334433211112222334566677776542 3499999999887665
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=89.11 E-value=11 Score=33.13 Aligned_cols=189 Identities=7% Similarity=-0.002 Sum_probs=94.8
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
.+|.++.......+. ++|..+++....-... ......+.+.+.. .+-+.. . ....+.+|+..++.
T Consensus 216 ~~~~~~~~~~~g~i~-~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~-~------~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIF-VYQITEKTPTGKLIGH------HGPISVLEFNDTN-KLLLSA-S------DDGTLRIWHGGNGN 280 (425)
T ss_dssp ETTEEEEECGGGCEE-EEETTCSSCSEEECCC------SSCEEEEEEETTT-TEEEEE-E------TTSCEEEECSSSBS
T ss_pred CCCEEEEEcCCCeEE-EEEcCCCceeeeeccC------CCceEEEEECCCC-CEEEEE-c------CCCEEEEEECCCCc
Confidence 356666555566788 9998876543221111 1234456666643 222222 1 13457788876543
Q ss_pred E-EEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeE
Q 017748 186 W-RRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 186 W-~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
- ..+....... ..+. -+| +.+....+ ..|..+|+.+.+.... ..+.. ....+... +|++
T Consensus 281 ~~~~~~~~~~~i----~~~~~~~~~--~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 281 SQNCFYGHSQSI----VSASWVGDD--KVISCSMD-----GSVRLWSLKQNTLLALSIVDGV-----PIFAGRISQDGQK 344 (425)
T ss_dssp CSEEECCCSSCE----EEEEEETTT--EEEEEETT-----SEEEEEETTTTEEEEEEECTTC-----CEEEEEECTTSSE
T ss_pred cceEecCCCccE----EEEEECCCC--EEEEEeCC-----CcEEEEECCCCcEeEecccCCc-----cEEEEEEcCCCCE
Confidence 2 1111111111 1121 245 33333322 3799999987664332 32221 12233333 4666
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCC---------CCc-----eEEEEEeccCCCc-eeeEEEEecCCcEEEEEeeCCeEE
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGV---------NDS-----WTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAVRGDLC 325 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~---------~~~-----W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~~~~~~ 325 (366)
.++...+. .+.+|.++.... ... ...+..+.....+ ...-+.+..++..|+....++.+.
T Consensus 345 l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 345 YAVAFMDG-----QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp EEEEETTS-----CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred EEEEECCC-----eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 66555444 899999875320 001 1133444332101 245566677776666677777799
Q ss_pred EEeCC
Q 017748 326 WYDLE 330 (366)
Q Consensus 326 ~yd~~ 330 (366)
.||++
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99986
No 78
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=88.98 E-value=15 Score=34.48 Aligned_cols=198 Identities=13% Similarity=0.051 Sum_probs=103.3
Q ss_pred ceeEEeec-CCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe--c
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL--R 182 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~ 182 (366)
+|.+++.. ....+. |+|+.|++... ++... ...++.++|. ++|-.+.- . ...+.+|+. .
T Consensus 148 ~~~~~vs~~~d~~V~-v~D~~t~~~~~~i~~g~--------~~~~v~~spd-g~~l~v~~----~---d~~V~v~D~~~~ 210 (543)
T 1nir_A 148 PNLFSVTLRDAGQIA-LVDGDSKKIVKVIDTGY--------AVHISRMSAS-GRYLLVIG----R---DARIDMIDLWAK 210 (543)
T ss_dssp GGEEEEEEGGGTEEE-EEETTTCCEEEEEECST--------TEEEEEECTT-SCEEEEEE----T---TSEEEEEETTSS
T ss_pred CCEEEEEEcCCCeEE-EEECCCceEEEEEecCc--------ccceEEECCC-CCEEEEEC----C---CCeEEEEECcCC
Confidence 55655554 445677 99999987643 33111 1335666664 33433331 1 267888988 5
Q ss_pred CCcEEEccCCCcceecCCcceEE------CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCcc-C----C-CCc
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV------NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIV-G----I-EGY 249 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~------~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~-~----~-~~~ 249 (366)
++.- +..++.... ..++.+ +|..-+.+.... ..|..+|..+.+. ..++.+... . + ...
T Consensus 211 t~~~--~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 211 EPTK--VAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp SCEE--EEEEECCSE--EEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred CCcE--EEEEecCCC--cceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccccCCc
Confidence 5432 222221110 112222 676655555322 3789999987655 334443210 0 0 001
Q ss_pred eEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEE
Q 017748 250 YILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWY 327 (366)
Q Consensus 250 ~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~y 327 (366)
...+... +|..+++...... .+.+|-+.+.. . .++.+++.... .+-+++..+|..++.... ++.+.++
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g----~i~vvd~~~~~--~--l~~~~i~~~~~--~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETG----KVLLVNYKDID--N--LTVTSIGAAPF--LHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTT----EEEEEECTTSS--S--CEEEEEECCSS--CCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred eEEEEECCCCCEEEEEECCCC----eEEEEEecCCC--c--ceeEEeccCcC--ccCceECCCCCEEEEEecCCCeEEEE
Confidence 2233333 2444444443332 66666655421 1 12335554333 556788888855666543 5679999
Q ss_pred eCCCCeEEEeeee
Q 017748 328 DLERHRVRSIVEI 340 (366)
Q Consensus 328 d~~t~~~~~v~~~ 340 (366)
|+++++.....+.
T Consensus 352 D~~tg~l~~~i~~ 364 (543)
T 1nir_A 352 DSKDRRLSALVDV 364 (543)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEeecc
Confidence 9999998765354
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=88.97 E-value=11 Score=32.95 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=80.6
Q ss_pred ceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCcE
Q 017748 146 SLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRNDI 224 (366)
Q Consensus 146 ~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~~ 224 (366)
....+.+.+..+.+-+.+- ....+.+|+..++.-...-..+.... .......-++.+...+..+ ..
T Consensus 101 ~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 167 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSS-------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------PK 167 (408)
T ss_dssp CEEEEEECTTCTTCEEEEE-------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS------SS
T ss_pred cEEEEEEccCCCcEEEEEe-------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC------Ce
Confidence 4556666664444333321 14468888887765433222211111 0000011133344444333 26
Q ss_pred EEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc----
Q 017748 225 IIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN---- 297 (366)
Q Consensus 225 i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---- 297 (366)
|..+|+.+.+... +..... ....+... +|+ +.+.+..+. .+.+|-+..... .. ..+..
T Consensus 168 v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~--~~---~~~~~~~~~ 232 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADS-----RVKLWDVRRASG--CL---ITLDQHNGK 232 (408)
T ss_dssp EEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSC--CS---EECCTTTTC
T ss_pred EEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCc--cc---ccccccccc
Confidence 8899998765422 222111 22233333 344 555555444 899998875321 01 11100
Q ss_pred ---------CCC-ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 298 ---------VGG-GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 298 ---------~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
... ....-+.+..++..++....++.+..||+++++..
T Consensus 233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 000 12444566677766777777778999999987643
No 80
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=88.90 E-value=10 Score=32.49 Aligned_cols=208 Identities=11% Similarity=0.036 Sum_probs=104.6
Q ss_pred EeeeceeEEeec-CCccEEEEEecccccee-ecCCcCCCCC--CCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 103 IGSCNGLLALED-SRRNIMLLLNPLTKRHR-VLPTFYRDLS--RCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 103 ~~s~~Gll~~~~-~~~~~~~V~NP~t~~~~-~LP~~~~~~~--~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
++..+..+.+.. ....+. ++|+.|++.. .++....... .......++.+++..+ +-++. .. . ....+.+
T Consensus 96 ~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~-~~-~---~~~~i~~ 168 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVT-AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYIS-GI-G---KESVIWV 168 (353)
T ss_dssp EETTTTEEEEEETTTTEEE-EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEE-EE-S---SSCEEEE
T ss_pred ECCCCCEEEEEecCCCEEE-EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEE-ec-C---CCceEEE
Confidence 333444444443 456788 9999998863 3433211110 0012345677777543 32222 11 1 1345888
Q ss_pred EEecCCcEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~ 256 (366)
++..++.=.. ++..... ...-...-+|...+++... ..|..+|+.+.+.. .+..+... .......+...
T Consensus 169 ~d~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s 239 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKM--STGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDG-KEHFFINISLD 239 (353)
T ss_dssp EETTTTEEEEEECCCCTT--CCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSS-SCCCEEEEEEE
T ss_pred EcCCCCceEEEecCCCCc--cceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCC-CCcccceEEEC
Confidence 8887654322 2101100 0111122356655555433 37889999987664 33443321 01122233443
Q ss_pred -CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCe
Q 017748 257 -GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHR 333 (366)
Q Consensus 257 -~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~ 333 (366)
+| .|++...... .+.+|-++. ...+..++... ..-+++..+|+.+++.. .++.+..||+++++
T Consensus 240 ~dg~~l~~~~~~~~-----~v~~~d~~~------~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 240 TARQRAFITDSKAA-----EVLVVDTRN------GNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp TTTTEEEEEESSSS-----EEEEEETTT------CCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCC-----EEEEEECCC------CcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 34 4655543222 677776544 12233333322 22366778886677776 35679999999998
Q ss_pred EEEeeee
Q 017748 334 VRSIVEI 340 (366)
Q Consensus 334 ~~~v~~~ 340 (366)
.......
T Consensus 306 ~~~~~~~ 312 (353)
T 3vgz_A 306 VVKTFDT 312 (353)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7655344
No 81
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=88.78 E-value=9.8 Score=32.03 Aligned_cols=199 Identities=9% Similarity=0.014 Sum_probs=101.5
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
|+........++ .+||.++ ...+..+. ....++.+++.. . ++... .....+.+|+..++..+.
T Consensus 42 l~~~~~~~~~i~-~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg-~--l~v~~-----~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 42 VIFSDVRQNRTW-AWSDDGQ-LSPEMHPS-------HHQNGHCLNKQG-H--LIACS-----HGLRRLERQREPGGEWES 104 (296)
T ss_dssp EEEEEGGGTEEE-EEETTSC-EEEEESSC-------SSEEEEEECTTC-C--EEEEE-----TTTTEEEEECSTTCCEEE
T ss_pred EEEEeCCCCEEE-EEECCCC-eEEEECCC-------CCcceeeECCCC-c--EEEEe-----cCCCeEEEEcCCCCcEEE
Confidence 455544556788 9999988 55554321 134567777643 2 22221 113468888888887766
Q ss_pred ccCCCccee-cCCcceEE--CCcEEEEEe---e-C-------CCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEE
Q 017748 189 IQDFPYFWV-TGTCSVFV--NGALHWTAA---L-N-------QDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLE 254 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~--~G~lYw~~~---~-~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~ 254 (366)
+........ .....+.+ +|.+|+... . . ........|..+|.. .+...+.-... ..-.++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-----~~~gi~ 178 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-----KPNGLA 178 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS-----SEEEEE
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC-----CCccEE
Confidence 532211111 11123333 577766421 0 0 000011379999988 55544421111 111233
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCce-EEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSW-TKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.. +|++. +...... .+.+|.++.. ++. .....+ ....+...-+++..+| .|++.. ++.+..||++.+
T Consensus 179 ~s~dg~~l-v~~~~~~----~i~~~~~~~~---g~~~~~~~~~-~~~~~~p~~i~~d~~G-~l~v~~-~~~v~~~~~~g~ 247 (296)
T 3e5z_A 179 FLPSGNLL-VSDTGDN----ATHRYCLNAR---GETEYQGVHF-TVEPGKTDGLRVDAGG-LIWASA-GDGVHVLTPDGD 247 (296)
T ss_dssp ECTTSCEE-EEETTTT----EEEEEEECSS---SCEEEEEEEE-CCSSSCCCSEEEBTTS-CEEEEE-TTEEEEECTTSC
T ss_pred ECCCCCEE-EEeCCCC----eEEEEEECCC---CcCcCCCeEe-eCCCCCCCeEEECCCC-CEEEEc-CCeEEEECCCCC
Confidence 33 56665 4333322 6777777632 234 333333 1111112235566666 777777 667999999977
Q ss_pred eEEEeeeecC
Q 017748 333 RVRSIVEIDD 342 (366)
Q Consensus 333 ~~~~v~~~~~ 342 (366)
..+.+ ..+.
T Consensus 248 ~~~~~-~~~~ 256 (296)
T 3e5z_A 248 ELGRV-LTPQ 256 (296)
T ss_dssp EEEEE-ECSS
T ss_pred EEEEE-ECCC
Confidence 77766 5543
No 82
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=88.77 E-value=12 Score=32.91 Aligned_cols=191 Identities=12% Similarity=0.016 Sum_probs=97.8
Q ss_pred eeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 105 SCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 105 s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
..+|.|...+ ...++. .+++.++....+...... ...++.+|+..+. +.... . ....+++++...
T Consensus 82 ~~~~~ly~~D~~~~~I~-r~~~~g~~~~~~~~~~~~------~p~glavd~~~g~--ly~~d---~--~~~~I~~~~~dG 147 (349)
T 3v64_C 82 HRRELVFWSDVTLDRIL-RANLNGSNVEEVVSTGLE------SPGGLAVDWVHDK--LYWTD---S--GTSRIEVANLDG 147 (349)
T ss_dssp TTTTEEEEEETTTTEEE-EEETTSCSCEEEECSSCS------CCCEEEEETTTTE--EEEEE---T--TTTEEEEEETTS
T ss_pred ccccEEEEEeccCCceE-EEecCCCCceEEEeCCCC------CccEEEEecCCCe--EEEEc---C--CCCeEEEEcCCC
Confidence 3567666555 455677 888887765544322211 2346777765442 22211 1 134677777754
Q ss_pred CcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECC
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGG 258 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g 258 (366)
..-+.+..-. . ....++.+ +|.+||...... ..|..+|+....-..+ ..... ...--|+. .++
T Consensus 148 ~~~~~l~~~~--l-~~P~~iavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~-~~~~~---~~PnGla~d~~~~ 215 (349)
T 3v64_C 148 AHRKVLLWQS--L-EKPRAIALHPMEGTIYWTDWGNT-----PRIEASSMDGSGRRII-ADTHL---FWPNGLTIDYAGR 215 (349)
T ss_dssp CSCEEEECTT--C-SCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEES-CCSSC---SCEEEEEEETTTT
T ss_pred CceEEEEeCC--C-CCcceEEEecCcCeEEEeccCCC-----CEEEEEeCCCCCcEEE-EECCC---CCcceEEEeCCCC
Confidence 4333321100 0 11124444 589999865431 3799999875433332 11111 11223444 378
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR 335 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~ 335 (366)
+||++..... . |+..+-.+.. +..+-...+ ..|.++.-.++.|++... ..++..+|..+++-.
T Consensus 216 ~lY~aD~~~~-----~--I~~~~~dG~~-----~~~~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 216 RMYWVDAKHH-----V--IERANLDGSH-----RKAVISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEETTTT-----E--EEEEETTSCS-----CEEEECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEECCCC-----E--EEEEeCCCCc-----eEEEEeCCC--CCceEEEEECCEEEEecCCCCeEEEEEccCCCcc
Confidence 9999876432 3 4444433221 112211122 566666545568888765 346999996665543
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=88.57 E-value=14 Score=33.42 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=95.3
Q ss_pred EEeeeceeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 102 ~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
.+...+++++....+..+. +||..+++... +.. + ......+.+.+.. .++.... ...+.+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~-vwd~~~~~~~~~~~~----h---~~~V~~l~~~~~~---~l~s~s~------dg~i~vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIR-VYDSINKKFLLQLSG----H---DGGVWALKYAHGG---ILVSGST------DRTVRVWD 189 (464)
T ss_dssp EEEEETTEEEEEETTSCEE-EEETTTTEEEEEECC----C---SSCEEEEEECSTT---EEEEEET------TSCEEEEE
T ss_pred EEEECCCEEEEEcCCCcEE-EEECCCCcEEEEEeC----C---CcCEEEEEEcCCC---EEEEEeC------CCCEEEEE
Confidence 3444456666665667788 99988877543 221 1 1234455554432 3333321 44688888
Q ss_pred ecCCcEEE-ccCCCcceecCCcceEE----CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-C----------CCCc-
Q 017748 181 LRVNSWRR-IQDFPYFWVTGTCSVFV----NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-P----------LPPI- 243 (366)
Q Consensus 181 s~t~~W~~-~~~~~~~~~~~~~~v~~----~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~----------lP~~- 243 (366)
..++.-.. +...... -.++.+ +|.....+ ..+ ..|..+|+.+..-... . .|..
T Consensus 190 ~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~l~s~-s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNST----VRCLDIVEYKNIKYIVTG-SRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTTTEEEEEECCCSSC----EEEEEEEESSSCEEEEEE-ETT-----SCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCCCcEEEEECCCCCc----cEEEEEecCCCCCEEEEE-cCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 87764321 1111100 011111 23333333 322 2688888876543211 0 0000
Q ss_pred ---c---CCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE
Q 017748 244 ---V---GIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL 317 (366)
Q Consensus 244 ---~---~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~ 317 (366)
. ..+.....-...+|.+.+++..+. .+.+|-+... ..+..+.... ....-+++..++..++.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~~------~~~~~~~~~~-~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDN-----TLIVWDVAQM------KCLYILSGHT-DRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTT------EEEEEECCCS-SCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCC-----eEEEEECCCC------cEEEEecCCC-CCEEEEEEcCCCCEEEE
Confidence 0 000111112233455555555454 8999987642 2233332211 11444566667756666
Q ss_pred EeeCCeEEEEeCCCCeEEEe
Q 017748 318 HAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 318 ~~~~~~~~~yd~~t~~~~~v 337 (366)
...++.+..||+++++....
T Consensus 328 g~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 328 ASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp EETTSCEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEECCCCcEEEE
Confidence 66677788888888775433
No 84
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=88.51 E-value=15 Score=34.45 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEEC-CeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALG-GCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~-g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|...+.+.... ..|..+|+++.+... ++..... +......+..-+ |.+++.....+. .+.||-.+..
T Consensus 334 dg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~d~----~V~v~d~~~~ 403 (543)
T 1nir_A 334 SHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGDG----SISLIGTDPK 403 (543)
T ss_dssp TSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSSSS----EEEEEECCTT
T ss_pred CCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCC-CCCCCcccCCCCCccEEEeccCCCc----eEEEEEeCCC
Confidence 566555554332 378889999887643 3332111 111122222223 666554432322 8999998763
Q ss_pred C-CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--e-----CCeEEEEeCCCCeEE
Q 017748 284 G-VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--V-----RGDLCWYDLERHRVR 335 (366)
Q Consensus 284 ~-~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~-----~~~~~~yd~~t~~~~ 335 (366)
+ .+..|..+.++.... +....+.++++|..|+... + +..+.+||.+|.+..
T Consensus 404 ~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 2 234599999987532 1145577888886777665 1 346999999987743
No 85
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=88.48 E-value=9.7 Score=31.61 Aligned_cols=194 Identities=13% Similarity=0.044 Sum_probs=98.7
Q ss_pred eeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+..+|.+...+ ....+. ++++.++....+-... .....++.+|+..+. +.... . ....+.+++..
T Consensus 44 d~~~~~ly~~d~~~~~I~-~~~~~g~~~~~~~~~~------~~~p~~ia~d~~~~~--lyv~d---~--~~~~I~~~~~~ 109 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIG-RASLHGGEPTTIIRQD------LGSPEGIALDHLGRT--IFWTD---S--QLDRIEVAKMD 109 (267)
T ss_dssp ETTTTEEEEEETTTTEEE-EEESSSCCCEEEECTT------CCCEEEEEEETTTTE--EEEEE---T--TTTEEEEEETT
T ss_pred ecCCCEEEEEECCCCEEE-EEecCCCCcEEEEECC------CCCccEEEEEecCCe--EEEEE---C--CCCEEEEEEcC
Confidence 33456665554 445677 8888776543332111 124557778875432 22211 1 13467777775
Q ss_pred CCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--C
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--G 257 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~ 257 (366)
...-+.+.... . ....++.+ +|.+||...... ...|..+++.......+.- ... .....++.. +
T Consensus 110 g~~~~~~~~~~--~-~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~ 178 (267)
T 1npe_A 110 GTQRRVLFDTG--L-VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFS 178 (267)
T ss_dssp SCSCEEEECSS--C-SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEEC-TTC---SCEEEEEEETTT
T ss_pred CCCEEEEEECC--C-CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCC
Confidence 43323221111 0 11224444 588999865421 1378888887544333311 111 112233333 5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEEE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVRS 336 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~ 336 (366)
+.||++..... .+ ++++-.+. .....+. .. ..|.++..+++.+++... .+++..+|+++++...
T Consensus 179 ~~lyv~d~~~~-----~I--~~~~~~g~----~~~~~~~--~~--~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 179 SQLCWVDAGTH-----RA--ECLNPAQP----GRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTTT-----EE--EEEETTEE----EEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCC-----EE--EEEecCCC----ceEEEec--CC--CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 68888776433 44 44443211 1111222 12 456666656668888764 3579999999887654
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
.
T Consensus 244 ~ 244 (267)
T 1npe_A 244 T 244 (267)
T ss_dssp E
T ss_pred E
Confidence 3
No 86
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=88.34 E-value=12 Score=32.47 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCc
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPY 194 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 194 (366)
.+..+. |||..++.+.........+ ......+.+.|. +.+ ++.... ...+.+++..++.++.+..+..
T Consensus 36 ~D~~i~-iw~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~-g~~-l~s~s~------D~~v~iw~~~~~~~~~~~~~~~ 103 (345)
T 3fm0_A 36 GDRRIR-IWGTEGDSWICKSVLSEGH---QRTVRKVAWSPC-GNY-LASASF------DATTCIWKKNQDDFECVTTLEG 103 (345)
T ss_dssp TTSCEE-EEEEETTEEEEEEEECSSC---SSCEEEEEECTT-SSE-EEEEET------TSCEEEEEECCC-EEEEEEECC
T ss_pred CCCeEE-EEEcCCCcceeeeeecccc---CCcEEEEEECCC-CCE-EEEEEC------CCcEEEEEccCCCeEEEEEccC
Confidence 445566 8887776543221111111 123455666664 233 222221 3457788877776654322211
Q ss_pred ceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-eeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCC
Q 017748 195 FWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-FYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDD 269 (366)
Q Consensus 195 ~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~ 269 (366)
... .-.++.+ +|.+...+..+ ..|..+|+.++. ...+ .+.... .....+... +|++.+.+..+.
T Consensus 104 h~~-~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d~- 172 (345)
T 3fm0_A 104 HEN-EVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHT---QDVKHVVWHPSQELLASASYDD- 172 (345)
T ss_dssp CSS-CEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCC---SCEEEEEECSSSSCEEEEETTS-
T ss_pred CCC-CceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcC---CCeEEEEECCCCCEEEEEeCCC-
Confidence 100 0011222 35444433333 258888887542 2222 111111 112223333 456555555444
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeC
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDL 329 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~ 329 (366)
.+.+|.++. ..|....++.... ....-+++.++|..|+....++.+..||.
T Consensus 173 ----~i~~w~~~~----~~~~~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 173 ----TVKLYREEE----DDWVCCATLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ----CEEEEEEET----TEEEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----cEEEEEecC----CCEEEEEEecCCC-CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 899998875 3477666664321 12445667777766666667777888875
No 87
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=88.17 E-value=12 Score=32.40 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=81.0
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCc
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGY 249 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~ 249 (366)
...+.+++..++.|.............-.++.+ +|.....+..+ ..+..+|..++.+..+ .+.... ..
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~h~---~~ 107 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECVTTLEGHE---NE 107 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-EEEEEEECCCS---SC
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCCeEEEEEccCCC---CC
Confidence 446888998888875322111110000011222 35443333322 2577788877665433 222221 12
Q ss_pred eEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEe
Q 017748 250 YILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 250 ~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd 328 (366)
...+... +|++.+.+..+. .+.+|.++.. ..+..+..+.... ....-+.+.+++..++....++.+..||
T Consensus 108 v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~---~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 108 VKSVAWAPSGNLLATCSRDK-----SVWVWEVDEE---DEYECVSVLNSHT-QDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EEEEEECTTSSEEEEEETTS-----CEEEEEECTT---SCEEEEEEECCCC-SCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCC-----eEEEEECCCC---CCeEEEEEecCcC-CCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 2233333 466666555554 8999999763 2344444443211 1144566677775666667777799999
Q ss_pred CCCCeEEEeeeecC
Q 017748 329 LERHRVRSIVEIDD 342 (366)
Q Consensus 329 ~~t~~~~~v~~~~~ 342 (366)
.+++++..+..+.+
T Consensus 179 ~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 179 EEEDDWVCCATLEG 192 (345)
T ss_dssp EETTEEEEEEEECC
T ss_pred ecCCCEEEEEEecC
Confidence 99988765534554
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=88.16 E-value=11 Score=31.84 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=41.9
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC-ceeeEEEEecCCcEEEEEeeCCeEEEEeCC-CCeEEE
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG-GNVKPLVYSRSEDKVLLHAVRGDLCWYDLE-RHRVRS 336 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~-t~~~~~ 336 (366)
.+.+.+..+. .+.||.++.. ...|.... +..... ....-+++..+|..|.....++.+..|+.. .++|+.
T Consensus 220 ~~las~s~D~-----~v~iWd~~~~--~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~ 291 (297)
T 2pm7_B 220 SYMASVSQDR-----TCIIWTQDNE--QGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 291 (297)
T ss_dssp EEEEEEETTS-----CEEEEEESST--TSCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred eEEEEEECCC-----cEEEEEeCCC--CCccceee-eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence 4444444444 8999998763 23465422 211111 124445667788566666777778889876 567887
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
+
T Consensus 292 ~ 292 (297)
T 2pm7_B 292 A 292 (297)
T ss_dssp C
T ss_pred c
Confidence 6
No 89
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=88.08 E-value=4.7 Score=38.34 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=66.3
Q ss_pred CcceEECCcEEEEEe-eCCCCCCCcEEEEEEC-CCc--eeeeeCCCCccC------CCCceEEEEEECCeEEEEEeecCC
Q 017748 200 TCSVFVNGALHWTAA-LNQDADRNDIIIAFDL-KSE--EFYQVPLPPIVG------IEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~-~~~~~~~~~~i~~fD~-~~~--~~~~i~lP~~~~------~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
..++..+|.+|.... .. .+.++|. ++. .|+. .++.... .......++..+|+|++....
T Consensus 56 ~~P~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d--- 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFPN-------NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN--- 124 (571)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---
T ss_pred cccEEECCEEEEEeCCCC-------EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeCC---
Confidence 457889999998876 33 6999998 654 4543 2322110 000112234567777775431
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCce-eeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN-VKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~-~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
-.+..++-...+..|.....-....... ..|... ++ .|++... ++.+++||.+|++..+-++.
T Consensus 125 -----g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 -----GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -----SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 1244555432345576532110000011 334332 34 7877765 46799999999997765444
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=88.04 E-value=11 Score=31.83 Aligned_cols=182 Identities=11% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
.+..+. ||+..+++....-... ......+.+.+.. .+ ++... ....+.+|+..++.-.. +..-.
T Consensus 43 ~dg~i~-iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~s~~------~d~~i~vwd~~~~~~~~~~~~~~ 107 (312)
T 4ery_A 43 ADKLIK-IWGAYDGKFEKTISGH------KLGISDVAWSSDS-NL-LVSAS------DDKTLKIWDVSSGKCLKTLKGHS 107 (312)
T ss_dssp TTSCEE-EEETTTCCEEEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCeEE-EEeCCCcccchhhccC------CCceEEEEEcCCC-CE-EEEEC------CCCEEEEEECCCCcEEEEEcCCC
Confidence 445566 8887776654422111 1234456666642 22 22221 14568888887654221 11100
Q ss_pred cceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeecCC
Q 017748 194 YFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDD 269 (366)
Q Consensus 194 ~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~ 269 (366)
... ..+. -+|.+...+..+ ..|..+|+++.+... +..... ....+... +|++.+.+..+.
T Consensus 108 ~~v----~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~- 171 (312)
T 4ery_A 108 NYV----FCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDG- 171 (312)
T ss_dssp SCE----EEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS-
T ss_pred CCE----EEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCC-
Confidence 000 0111 134433333332 368899998765432 222211 12223332 566666665554
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+... ..+..+..........+.+.+++..++....++.+..||+++++....
T Consensus 172 ----~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 172 ----LCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp ----CEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ----cEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 8999988752 122233221111144566777886677777788899999999886544
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.04 E-value=12 Score=32.26 Aligned_cols=203 Identities=11% Similarity=-0.019 Sum_probs=100.9
Q ss_pred EEEeeeceeEEeecCCccEEEEEecccccee-ecCCcCCCCCCCCcceEEEeeecC-CCCeEEEEEEEEcCCCCccEEEE
Q 017748 101 FIIGSCNGLLALEDSRRNIMLLLNPLTKRHR-VLPTFYRDLSRCVPSLEGFGFDVG-SGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 101 ~~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
.+.++.+|.+.+.+...... ++|..+++.. .+.... ......+.++|. .+.+-+.+ . ....+.+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~-s------~dg~i~~ 153 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQIT-ILDSKTNKVLREIEVDS------ANEIIYMYGHNEVNTEYFIWA-D------NRGTIGF 153 (343)
T ss_dssp EEEECSTTEEEEEETTTEEE-EEETTTCCEEEEEECCC------SSCEEEEECCC---CCEEEEE-E------TTCCEEE
T ss_pred eEEecCCCeEEEEEccCceE-EeecCCcceeEEeecCC------CCCEEEEEcCCCCCCCEEEEE-e------CCCcEEE
Confidence 45666788888887666777 8888888733 222111 113455667662 23333222 2 1446888
Q ss_pred EEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE
Q 017748 179 FSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 179 yss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 256 (366)
|+.+++.-......... ..-.++.+ +|.+...+..+ ..|..+|+.+.+-....+... +......+...
T Consensus 154 wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~fs 223 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPVD--EEAKIKEVKFA 223 (343)
T ss_dssp EESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCCC--TTSCEEEEEEC
T ss_pred EECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEecc--CCCCEEEEEEe
Confidence 98887654322111100 00112222 45555444433 369999999876542222221 11123334444
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCcee-eEEEEecCCcEEEEEee-CCeEEEEeC--CC
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNV-KPLVYSRSEDKVLLHAV-RGDLCWYDL--ER 331 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~~i~~~~~-~~~~~~yd~--~t 331 (366)
+|...+.+. ++ .+.+|-+.......... .+........ .-+++..+|..++.... ++.+..|+. .+
T Consensus 224 ~~g~~l~s~~-~~-----~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 224 DNGYWMVVEC-DQ-----TVVCFDLRKDVGTLAYP---TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTSSEEEEEE-SS-----BEEEEETTSSTTCBSSC---CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCCEEEEEe-CC-----eEEEEEcCCCCcceeec---ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 355444444 44 89999887642111111 0000000001 23667777755555555 666777776 55
Q ss_pred CeEEE
Q 017748 332 HRVRS 336 (366)
Q Consensus 332 ~~~~~ 336 (366)
+.|+.
T Consensus 295 ~~~~~ 299 (343)
T 3lrv_A 295 KNWTK 299 (343)
T ss_dssp CSEEE
T ss_pred cceEe
Confidence 66876
No 92
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.01 E-value=9.6 Score=33.90 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=46.4
Q ss_pred CCeEEEEEeecCCC--CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe-eCCeEEEEeCCCC
Q 017748 257 GGCLCLLCKFDDDD--DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA-VRGDLCWYDLERH 332 (366)
Q Consensus 257 ~g~L~l~~~~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~-~~~~~~~yd~~t~ 332 (366)
+++||+.......+ ....=.||+++- .+...+.+|+.... ..-+.+..+|+ .++... .++.+.+||.+|+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~~--p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGHD--VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCCC--cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 46777765422100 001236888886 45777788876543 55567778886 344444 2567999999998
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+....
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 87644
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=87.99 E-value=14 Score=32.78 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEe--ecCCCCCCcEEEEEec
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCK--FDDDDDDRPWDLWVMK 281 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~--~~~~~~~~~l~iW~l~ 281 (366)
+|.....+..+ ..|..+|+.+.+.......... ....+... ++.+.+.+. .+. .+.+|-+.
T Consensus 228 ~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~p~~~~ll~~~~gs~d~-----~i~i~d~~ 292 (401)
T 4aez_A 228 DGLQLASGGND------NVVQIWDARSSIPKFTKTNHNA----AVKAVAWCPWQSNLLATGGGTMDK-----QIHFWNAA 292 (401)
T ss_dssp TSSEEEEEETT------SCEEEEETTCSSEEEEECCCSS----CCCEEEECTTSTTEEEEECCTTTC-----EEEEEETT
T ss_pred CCCEEEEEeCC------CeEEEccCCCCCccEEecCCcc----eEEEEEECCCCCCEEEEecCCCCC-----EEEEEECC
Confidence 45555544443 3699999987554332111111 12233333 234555443 233 89999887
Q ss_pred cCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--eCCeEEEEeCCCCeEEEeeeecC
Q 017748 282 EYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--VRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.. ..+..+..... ..-+++..++..++... .++.+..||+.+++...+.++.+
T Consensus 293 ~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 293 TG------ARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp TC------CEEEEEECSSC--EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred CC------CEEEEEeCCCc--EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 52 22333433222 45566677776666654 56789999999998877756654
No 94
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=87.62 E-value=5.1 Score=39.21 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred cEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-----CCCCccC
Q 017748 174 TEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-----PLPPIVG 245 (366)
Q Consensus 174 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-----~lP~~~~ 245 (366)
..+.+++.....-+.+..... ....++.+ +|.|||...... ..|..+|+.......+ ..|...
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~---~~P~giavDp~~g~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~~l~~PnGl- 545 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQG---SKPRAIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTENIQWPNGI- 545 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSS---CCCCCEECCSSSSCCEECCCSSS-----CCEEBCCSSSCCCCEESCSSCSSCCCE-
T ss_pred CeEEEEecCCCceEEEEeCCC---CCcceEEEccCCCcEEEcccCCC-----CeEEEEeCCCCCeeEEEeCCCCCccEE-
Confidence 346677765544333321110 11234555 589999764321 2688888764333222 222221
Q ss_pred CCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-CeE
Q 017748 246 IEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-GDL 324 (366)
Q Consensus 246 ~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-~~~ 324 (366)
.+...+++||++..... . |++++-.+. . +..+-........|.++..+++.||+.... .+|
T Consensus 546 ------avd~~~~~LY~aD~~~~-----~--I~~~d~dG~-~----~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 546 ------TLDLLSGRLYWVDSKLH-----S--ISSIDVNGG-N----RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp ------EECTTTCCEEEEETTTT-----E--EEEECSSSS-C----CEEECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred ------EEeccCCEEEEEecCCC-----e--EEEEccCCC-c----eEEEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence 12223688988775432 3 444443321 1 112211100124565555555578887543 469
Q ss_pred EEEeCCCCeEEEe
Q 017748 325 CWYDLERHRVRSI 337 (366)
Q Consensus 325 ~~yd~~t~~~~~v 337 (366)
..+|+.+++...+
T Consensus 608 ~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 608 FSANRLTGSDVNL 620 (699)
T ss_dssp EEEETTTEEEEEC
T ss_pred EEEEccCCCceEE
Confidence 9999998887655
No 95
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=87.61 E-value=12 Score=31.83 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=60.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|...+.-..+..+.. -..++.. +|+|+++..... ...|+.++..
T Consensus 42 ~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~~------p~gia~~~dG~l~vad~~~~-----~~~v~~~d~~- 103 (306)
T 2p4o_A 42 DGTIFVTNHEV------GEIVSITPDGNQQIHATVEGK------VSGLAFTSNGDLVATGWNAD-----SIPVVSLVKS- 103 (306)
T ss_dssp TSCEEEEETTT------TEEEEECTTCCEEEEEECSSE------EEEEEECTTSCEEEEEECTT-----SCEEEEEECT-
T ss_pred CCCEEEEeCCC------CeEEEECCCCceEEEEeCCCC------ceeEEEcCCCcEEEEeccCC-----cceEEEEcCC-
Confidence 68888886443 379999998764444444432 2223333 688887765332 4567776532
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCeE
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHRV 334 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~~ 334 (366)
..+...+..++.... ..-.+.+.++ .+++.. ..+.++.+|+.+++.
T Consensus 104 -~g~~~~~~~~~~~~~--~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 104 -DGTVETLLTLPDAIF--LNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp -TSCEEEEEECTTCSC--EEEEEESSSS-EEEEEETTTTEEEEEETTTTEE
T ss_pred -CCeEEEEEeCCCccc--cCcccccCCC-cEEEEECCCCeEEEEeCCCCcE
Confidence 234555544432221 2223334444 666654 356799999987643
No 96
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=87.59 E-value=11 Score=31.11 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=96.1
Q ss_pred CCccEEEEEeccc-cceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCC
Q 017748 115 SRRNIMLLLNPLT-KRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 193 (366)
....++ ++|..+ ++...+....... ....+.+.|. +.+ ++... ........+.+++..++.-+.+....
T Consensus 60 ~~~~i~-~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spd-g~~-l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 129 (297)
T 2ojh_A 60 SEGLLY-RLSLAGDPSPEKVDTGFATI-----CNNDHGISPD-GAL-YAISD--KVEFGKSAIYLLPSTGGTPRLMTKNL 129 (297)
T ss_dssp ETTEEE-EEESSSCCSCEECCCTTCCC-----BCSCCEECTT-SSE-EEEEE--CTTTSSCEEEEEETTCCCCEECCSSS
T ss_pred cCCeEE-EEeCCCCCCceEeccccccc-----cccceEECCC-CCE-EEEEE--eCCCCcceEEEEECCCCceEEeecCC
Confidence 345788 999999 8777665432110 1112344443 222 22221 11123456677776666655543322
Q ss_pred cceecCCcceEECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCC
Q 017748 194 YFWVTGTCSVFVNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDD 271 (366)
Q Consensus 194 ~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~ 271 (366)
..... ...-+|. +++...... ...|..+|..+.+...+..... ....+... +|+..++......
T Consensus 130 ~~~~~---~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~-- 195 (297)
T 2ojh_A 130 PSYWH---GWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG-----RNDGPDYSPDGRWIYFNSSRTG-- 195 (297)
T ss_dssp SEEEE---EECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS-----CEEEEEECTTSSEEEEEECTTS--
T ss_pred Cccce---EECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC-----ccccceECCCCCEEEEEecCCC--
Confidence 11100 0111454 443443321 1357777777666554422211 12223332 5654444443222
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-----------CeEEEEeCCCCeEEEeeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-----------GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-----------~~~~~yd~~t~~~~~v~~~ 340 (366)
.+.||.++..+ ... ..+.... .......+..+|..|++...+ ..++.||+++++.+.+..+
T Consensus 196 --~~~i~~~~~~~--~~~---~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 196 --QMQIWRVRVDG--SSV---ERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp --SCEEEEEETTS--SCE---EECCCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred --CccEEEECCCC--CCc---EEEecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 78999997432 112 2222111 123345667788677776543 3599999999988777444
No 97
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.58 E-value=6.6 Score=35.44 Aligned_cols=111 Identities=8% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-eEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|.+||..... ..|..+|+++.....+...... .. ++.. +| .|++..... .-.||.++..
T Consensus 141 ~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~~----~~--ia~~~~g~~l~~~d~~~------~~~I~~~d~~ 202 (409)
T 3hrp_A 141 NNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFKG----GK--PAVTKDKQRVYSIGWEG------THTVYVYMKA 202 (409)
T ss_dssp TTEEEEEETTT------TEEEEEETTTTEEEEEEETCCB----CB--CEECTTSSEEEEEBSST------TCEEEEEEGG
T ss_pred CCCEEEEecCC------CcEEEEECCCCEEEEeeccCCC----Cc--eeEecCCCcEEEEecCC------CceEEEEEcC
Confidence 58888887643 4899999998777665322111 11 2322 33 455444322 2267777764
Q ss_pred CCCCceE--EEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWT--KLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~--~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+ .|. .+..+.........-+++..+++.|++...+++++.||++++....+
T Consensus 203 ~---~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 203 S---GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp G---TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred C---CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 2 243 22222221111133456666445888866566799999998876554
No 98
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=87.54 E-value=14 Score=32.35 Aligned_cols=99 Identities=12% Similarity=0.219 Sum_probs=53.7
Q ss_pred EEEEEECCCcee-eeeCCCCccC--------CCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEE
Q 017748 224 IIIAFDLKSEEF-YQVPLPPIVG--------IEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLA 293 (366)
Q Consensus 224 ~i~~fD~~~~~~-~~i~lP~~~~--------~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 293 (366)
.|..+|+.+.+. ..+..|.... +......+... +|++.+....+. .+.||.+.. ...+.
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~------~~~~~ 327 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKT------KERIT 327 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTT------TEEEE
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCC------CceeE
Confidence 799999987654 3333321100 11122333333 466655555444 899998865 23344
Q ss_pred Eec------cC--------------CCceeeEEEEecCC----------cEEEEEeeCCeEEEEeCCCCe
Q 017748 294 TLL------NV--------------GGGNVKPLVYSRSE----------DKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 294 ~i~------~~--------------~~~~~~~~~~~~~g----------~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.+. .. .-....-+++..+| ..++....++.+..||+++++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 444 11 01114445666665 356666778889999998874
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=87.45 E-value=16 Score=32.88 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=19.5
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
....++.++| .++....++.+.++|+++++.++
T Consensus 403 ~s~~~fspdg-~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 403 SSLNEFNPMG-DTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CCEEEECTTS-SCEEEECSSEEEECCCC------
T ss_pred EEEEEECCCC-CEEEEEcCCcEEEEECCcCeeeC
Confidence 3445677787 55556667789999999988764
No 100
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=86.88 E-value=13 Score=32.70 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCeEEEEEeecCC---CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDD---DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~---~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+++||++...+.. .....-.||+++- .+...+.+++... ..-+++..+|+.++.... +.+.+||++|++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 4677776541110 0001345666664 2345677776543 444667788866665554 679999999996
Q ss_pred EEEeeee
Q 017748 334 VRSIVEI 340 (366)
Q Consensus 334 ~~~v~~~ 340 (366)
++.+-.+
T Consensus 337 l~~~~~i 343 (361)
T 2oiz_A 337 PKLLRTI 343 (361)
T ss_dssp CEEEEEE
T ss_pred ceeeEEe
Confidence 6666333
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=86.38 E-value=14 Score=31.20 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=59.7
Q ss_pred EEEEEECCCc--eeeee-CCCCccCCCCceEEEEEEC---CeEEEEEeecCCCCCCcEEEEEeccCC---CCCceEEEEE
Q 017748 224 IIIAFDLKSE--EFYQV-PLPPIVGIEGYYILLEALG---GCLCLLCKFDDDDDDRPWDLWVMKEYG---VNDSWTKLAT 294 (366)
Q Consensus 224 ~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~l~~~~---g~L~l~~~~~~~~~~~~l~iW~l~~~~---~~~~W~~~~~ 294 (366)
.|..+|+.++ .+..+ .+... ......+.... |++.+.+..+. .+.+|-++... ....|..+..
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~ 105 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDK-----TVKLWEEDPDQEECSGRRWNKLCT 105 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEECTTSCTTSSCSEEEEEE
T ss_pred eEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEecCCCcccccccCcceeee
Confidence 6888888754 22222 11111 11223344433 66666666555 89999997642 1245777776
Q ss_pred eccCCCceeeEEEEecC--CcEEEEEeeCCeEEEEeCCCCe
Q 017748 295 LLNVGGGNVKPLVYSRS--EDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 295 i~~~~~~~~~~~~~~~~--g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+.... ....-+.+..+ +..++....++.+..||+++++
T Consensus 106 ~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 106 LNDSK-GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp ECCCS-SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred ecccC-CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 65322 11444556666 6566667778889999998776
No 102
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.28 E-value=13 Score=30.88 Aligned_cols=201 Identities=8% Similarity=0.040 Sum_probs=98.8
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|-+.+.+ ....+. ++|+..+....++........ .....++.++...+. ++.... . ....+.+|+....
T Consensus 39 ~~g~l~v~~~~~~~i~-~~d~~g~~~~~~~~~~~~~~~-~~~p~~i~~~~~~g~--l~v~~~-~---~~~~i~~~d~~g~ 110 (286)
T 1q7f_A 39 AQNDIIVADTNNHRIQ-IFDKEGRFKFQFGECGKRDSQ-LLYPNRVAVVRNSGD--IIVTER-S---PTHQIQIYNQYGQ 110 (286)
T ss_dssp TTCCEEEEEGGGTEEE-EECTTSCEEEEECCBSSSTTC-BSSEEEEEEETTTTE--EEEEEC-G---GGCEEEEECTTSC
T ss_pred CCCCEEEEECCCCEEE-EECCCCcEEEEecccCCCccc-ccCceEEEEEcCCCe--EEEEcC-C---CCCEEEEECCCCc
Confidence 345554443 445677 889886665666543211111 223456666433332 222211 0 1245777774333
Q ss_pred cEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
.-+.+..... ....++.+ +|.+|...... ..|..||...+....+..+... .....++.. +|+|+
T Consensus 111 ~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 111 FVRKFGATIL---QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEEECTTTC---SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEE
T ss_pred EEEEecCccC---CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEE
Confidence 2233321110 01123333 57766544332 3799999876665555433222 122234443 58888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC-CCceeeEEEEecCCcEEEEEee-CC-eEEEEeCCCCeEEEee
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV-GGGNVKPLVYSRSEDKVLLHAV-RG-DLCWYDLERHRVRSIV 338 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~~~~~-~~-~~~~yd~~t~~~~~v~ 338 (366)
+...... .+.+|-.+. .. +..+... .+....-+++..+| .+++... +. .+..||.+.+..+.+
T Consensus 179 v~~~~~~-----~i~~~~~~g-----~~--~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~- 244 (286)
T 1q7f_A 179 ISDNRAH-----CVKVFNYEG-----QY--LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISAL- 244 (286)
T ss_dssp EEEGGGT-----EEEEEETTC-----CE--EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEE-
T ss_pred EEECCCC-----EEEEEcCCC-----CE--EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEE-
Confidence 7665444 677765321 12 2233322 12112234455566 7777664 33 799999887776666
Q ss_pred ee
Q 017748 339 EI 340 (366)
Q Consensus 339 ~~ 340 (366)
..
T Consensus 245 ~~ 246 (286)
T 1q7f_A 245 ES 246 (286)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=85.96 E-value=15 Score=31.26 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=32.7
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC----cEEEEEeeCCeEEEEeCCC
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE----DKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g----~~i~~~~~~~~~~~yd~~t 331 (366)
.+.+|.++.. ..|..+..+.... ....-+++.+++ ..|+-...++.+..||+++
T Consensus 190 ~v~lWd~~~~---~~~~~~~~l~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 190 LIKLWKEEED---GQWKEEQKLEAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BCCEEEECTT---SCEEEEECCBCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred eEEEEEeCCC---CccceeeecccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 8999988642 3476665553211 113444555543 3455566777899999876
No 104
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=85.55 E-value=27 Score=33.79 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=76.0
Q ss_pred cEEEEEEecCC--cEEEccCCCcceecCCcce-EECCcEEEEEeeCCCCCCCcEEEEEECCCc---eeeeeCCCCccCCC
Q 017748 174 TEVAVFSLRVN--SWRRIQDFPYFWVTGTCSV-FVNGALHWTAALNQDADRNDIIIAFDLKSE---EFYQVPLPPIVGIE 247 (366)
Q Consensus 174 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~---~~~~i~lP~~~~~~ 247 (366)
..+.+++..++ .|+.+...... ....+ .-++.+|+++..+.. ...|+..|+.+. .|+.+ .|... .
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~---~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l-~~~~~--~ 329 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDA---DVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDL-IPERQ--Q 329 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSS---CEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEE-ECCCS--S
T ss_pred cEEEEEECCCCCCceEEEeCCCCc---eEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEE-ecCCC--C
Confidence 35556665443 56655322111 11112 235678887765321 258999999874 35554 22221 1
Q ss_pred CceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----Ce
Q 017748 248 GYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GD 323 (366)
Q Consensus 248 ~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~ 323 (366)
.. .+...++.|.+....+. .-.|++++-.+ .+.+ .+.....+....+....+++.+++...+ ..
T Consensus 330 -~~-~~s~~g~~lv~~~~~~g-----~~~l~~~d~~g---~~~~--~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 330 -VL-TVHSGSGYLFAEYMVDA-----TARVEQFDYEG---KRVR--EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -CE-EEEEETTEEEEEEEETT-----EEEEEEECTTS---CEEE--EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -EE-EEEEECCEEEEEEEECC-----eeEEEEEECCC---CeeE--EeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 12 44555777877766654 44555555322 2433 3333221112222233466678877654 46
Q ss_pred EEEEeCCCCeEEEe
Q 017748 324 LCWYDLERHRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t~~~~~v 337 (366)
++.||+++++.+.+
T Consensus 398 l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 398 LYRFEPKSGAISLY 411 (693)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEECCCCeEEEE
Confidence 99999999987766
No 105
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=85.49 E-value=12 Score=31.95 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|+++.++..+..+... ....++.. +|+|+++...... . .-.|+.++..+
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~----~~~~i~~~~dg~l~v~~~~~~~-~--~~~i~~~d~~~ 121 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKA----NPAAIKIHKDGRLFVCYLGDFK-S--TGGIFAATENG 121 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECSSS----SEEEEEECTTSCEEEEECTTSS-S--CCEEEEECTTS
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCC----CcceEEECCCCcEEEEeCCCCC-C--CceEEEEeCCC
Confidence 58888776543 3799999998887665321111 22234443 6788876653310 0 12345554322
Q ss_pred CCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-------CeEEEEeCCCCeEEEe
Q 017748 285 VNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t~~~~~v 337 (366)
. .-..... .........-+.+..+| .+++.... ..++.||+++++.+.+
T Consensus 122 ~--~~~~~~~-~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 122 D--NLQDIIE-DLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp C--SCEEEEC-SSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred C--EEEEEEc-cCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 1 1111111 11111112334555566 67776542 4599999988776654
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=85.19 E-value=23 Score=34.69 Aligned_cols=98 Identities=14% Similarity=0.293 Sum_probs=60.8
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-C--CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-G--GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~--g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
.|..+|+.+++...+ .+.... .....+... + |.+.+.+..++ .+.+|-++. +.|..+..+....
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~---~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~----~~~~~~~~~~~h~ 99 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEEN----GRWSQIAVHAVHS 99 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCS---SCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEET----TEEEEEEEECCCS
T ss_pred cEEEEecCCCCCccceeccCCc---CceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCC----CcccccccccCCC
Confidence 788888886665544 232221 122334433 2 66666666555 899999886 3476666664322
Q ss_pred CceeeEEEEecC--CcEEEEEeeCCeEEEEeCCCCeE
Q 017748 300 GGNVKPLVYSRS--EDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 300 ~~~~~~~~~~~~--g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
....-+.+.++ ++.++....++.+..||++++..
T Consensus 100 -~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 100 -ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred -CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 11445566666 65677777788899999998843
No 107
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=85.12 E-value=4.1 Score=39.65 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccC----CCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVG----IEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~----~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..++..+|++|..+..+ .++++|.++. .|+.- ..+.... .......++..+|+|++... +
T Consensus 60 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d----- 126 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-D----- 126 (668)
T ss_dssp CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-T-----
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-C-----
Confidence 44788999999887654 7999998764 45432 2221110 00011223445777766532 1
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
-.|..++....+..|.....-+..... ...|... ++ .|++... ++.+++||.+|++..+-++.
T Consensus 127 --g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 127 --GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred --CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 124445533234557653210100000 1233332 33 7777643 35799999999997766443
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.76 E-value=19 Score=31.36 Aligned_cols=100 Identities=6% Similarity=-0.001 Sum_probs=51.4
Q ss_pred EEEEEECCCceeeeeCCCCcc--CCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIV--GIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~--~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+-......... .............+...++...+. .+.+|.+... ..+..+.... +
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~v~d~~~~------~~~~~~~~~~-~ 335 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS-----TIAVYTVYSG------EQITMLKGHY-K 335 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT-----EEEEEETTTC------CEEEEECCCS-S
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC-----EEEEEECcCC------cceeeeccCC-C
Confidence 699999987654332111110 001111122222233333344343 8889987652 2334443211 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
...-+++..++..|+....++.+..||+++.+-.
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 1455677788866666677778999999988654
No 109
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=84.64 E-value=17 Score=31.92 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=71.0
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
++.....+..+. +||..+++....-...............+.+.|....+ ++.... + .....+.+|+.+++.-.
T Consensus 180 ~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~-d--~~~~~i~~~d~~~~~~~- 253 (416)
T 2pm9_A 180 VFASAGSSNFAS-IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR-VATATG-S--DNDPSILIWDLRNANTP- 253 (416)
T ss_dssp EEEEESSSSCEE-EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE-EEEEEC-C--SSSCCCCEEETTSTTSC-
T ss_pred EEEEEcCCCCEE-EEECCCCCcceEEeccccccccCCceEEEEECCCCCCE-EEEEEC-C--CCCceEEEEeCCCCCCC-
Confidence 444444566788 99988876543222211100001234566676653333 333221 1 11126788888764210
Q ss_pred ccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CC-eEEE
Q 017748 189 IQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GG-CLCL 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g-~L~l 262 (366)
+..+.......-.++.+ +|.+...+..+ ..|..+|+.+.+. ..+...... ...+... +| ++.+
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPEAPDLFA 322 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECSSSC-----CCCEEECTTCTTEEE
T ss_pred cEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCCCCc-----eEEEEECCCCCCEEE
Confidence 00111000011112322 45555555443 3799999987644 222322211 1122332 34 5555
Q ss_pred EEeecCCCCCCcEEEEEeccC
Q 017748 263 LCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~ 283 (366)
....+. .+.||.++..
T Consensus 323 s~~~d~-----~i~iw~~~~~ 338 (416)
T 2pm9_A 323 CASFDN-----KIEVQTLQNL 338 (416)
T ss_dssp ECCSSS-----EEEEEESCCC
T ss_pred EEecCC-----cEEEEEccCC
Confidence 555444 8999998764
No 110
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=84.64 E-value=5.4 Score=38.94 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=64.7
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCcc----CCCCceEEEEEECCeEEEEEeecCCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIV----GIEGYYILLEALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~----~~~~~~~~l~~~~g~L~l~~~~~~~~~~ 272 (366)
..++..+|.+|..+... .|.++|.++. .|+.- ..+... .+......++..+|+|++... +.
T Consensus 64 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-dg---- 131 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-DG---- 131 (689)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TS----
T ss_pred ecCEEECCEEEEEcCCC-------eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-CC----
Confidence 44788999999877644 6999998764 55432 222110 000011223456777776542 11
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCC-Cc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeee
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVG-GG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~ 339 (366)
. |..++....+..|......+... .. ...|... ++ .|++... ++.+++||.+|++..+-++
T Consensus 132 -~--l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 -R--LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp -E--EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred -E--EEEEECCCCCEeeeecCcCCCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 2 33444332345576543211111 00 1334332 34 7777543 3579999999999766534
No 111
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=84.62 E-value=19 Score=31.16 Aligned_cols=144 Identities=7% Similarity=0.073 Sum_probs=66.7
Q ss_pred EEEEEE--ecCCcEEEccCCCcceecCCcceEE--CCc-EEEEEeeCCCCCCCcEEEE--EECCCceeeee-CCCCccCC
Q 017748 175 EVAVFS--LRVNSWRRIQDFPYFWVTGTCSVFV--NGA-LHWTAALNQDADRNDIIIA--FDLKSEEFYQV-PLPPIVGI 246 (366)
Q Consensus 175 ~~~vys--s~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lYw~~~~~~~~~~~~~i~~--fD~~~~~~~~i-~lP~~~~~ 246 (366)
.+.+|. ..++..+.+... .. .....+.+ +|. +|....... .. ..+.. +|..+.+...+ ..+...
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--~~-~~p~~l~~spdg~~l~~~~~~~~-~~--~~v~~~~~~~~~g~~~~~~~~~~~~-- 99 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--EV-ANPSYLIPSADGKFVYSVNEFSK-DQ--AAVSAFAFDKEKGTLHLLNTQKTMG-- 99 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--EC-SCCCSEEECTTSSEEEEEECCSS-TT--CEEEEEEEETTTTEEEEEEEEECSS--
T ss_pred CEEEEEEeCCCCCEEEeecc--cC-CCCceEEECCCCCEEEEEEccCC-CC--CcEEEEEEeCCCCcEEEeeEeccCC--
Confidence 455554 466777665432 11 11112332 465 555544311 01 24544 45554666555 333221
Q ss_pred CCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec-cCC------CceeeEEEEecCCcEEEEEe
Q 017748 247 EGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL-NVG------GGNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 247 ~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~------~~~~~~~~~~~~g~~i~~~~ 319 (366)
.....+.. +|+..++...... .+.+|.++..+.-.......... ... ....+-+++.++|+.+++..
T Consensus 100 -~~p~~~~~-dg~~l~~~~~~~~----~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 100 -ADPCYLTT-NGKNIVTANYSGG----SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp -SCEEEEEE-CSSEEEEEETTTT----EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred -CCcEEEEE-CCCEEEEEECCCC----EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 12233444 7765444443332 89999997643211111111111 000 00124467778886677765
Q ss_pred e-CCeEEEEeCCCC
Q 017748 320 V-RGDLCWYDLERH 332 (366)
Q Consensus 320 ~-~~~~~~yd~~t~ 332 (366)
. ++.+..|++...
T Consensus 174 ~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 174 LGTDQIHKFNINPN 187 (361)
T ss_dssp TTTTEEEEEEECTT
T ss_pred CCCCEEEEEEEcCC
Confidence 4 456778876643
No 112
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=84.51 E-value=3.3 Score=36.34 Aligned_cols=142 Identities=8% Similarity=0.009 Sum_probs=70.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-eeee-CCCCccCCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-FYQV-PLPPIVGIEG 248 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~ 248 (366)
...+.+|+..++.|+.+..+...... -.++.+ +|.+...+..+ ..|..+|+.++. +... .+.... .
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~~---~ 101 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDKI-VTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRLN---R 101 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSSC-EEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCCS---S
T ss_pred CCEEEEEEccCCceEEEEEEecCCce-EEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEecccC---C
Confidence 44678888888888776544322110 011222 34433333322 258888988776 3322 222111 1
Q ss_pred ceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 249 YYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 249 ~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
....+... +|++.+.+..+. .+.+|.++.. ..|.....+....-....-+.+..++..++....++.+..|
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGAR-----VISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVL 173 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSS-----CEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEE
T ss_pred ceEEEEECCCCCEEEEEecCC-----eEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 12223332 466655555554 8999988763 33655555543111124556677777666667777789999
Q ss_pred eCCCC
Q 017748 328 DLERH 332 (366)
Q Consensus 328 d~~t~ 332 (366)
|++++
T Consensus 174 d~~~~ 178 (377)
T 3dwl_C 174 SAYVR 178 (377)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 98643
No 113
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=84.37 E-value=19 Score=30.93 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=86.3
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec-CCcEEEccCCCcceecCCcceE--ECCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR-VNSWRRIQDFPYFWVTGTCSVF--VNGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~ 223 (366)
...+.++|... ++... . ....+.+|+.. ++..................+. -+|...+++.... .
T Consensus 143 ~~~~~~spdg~---l~v~~---~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~ 209 (347)
T 3hfq_A 143 IHYTDLTPDNR---LAVID---L--GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----S 209 (347)
T ss_dssp EEEEEECTTSC---EEEEE---T--TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----T
T ss_pred ceEEEECCCCc---EEEEe---C--CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----C
Confidence 45577777543 33221 1 13468889887 5665543211110000011122 3576333433322 2
Q ss_pred EEEEEECC--Cceeeee----CCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEe
Q 017748 224 IIIAFDLK--SEEFYQV----PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL 295 (366)
Q Consensus 224 ~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 295 (366)
.+..||+. +.++..+ ..|...........++.. +|+ |++...... .+.+|.++.. +.+..+..+
T Consensus 210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~-----~v~v~~~~~~---g~~~~~~~~ 281 (347)
T 3hfq_A 210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN-----TLAVFAVTAD---GHLTLIQQI 281 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT-----EEEEEEECGG---GCEEEEEEE
T ss_pred EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC-----EEEEEEECCC---CcEEEeEEE
Confidence 45555554 4665433 334322111122233333 565 555444333 8999999853 246666666
Q ss_pred ccCCCceeeEEEEecCCcEEEEEeeC-CeEEEE--eCCCCeEEEe
Q 017748 296 LNVGGGNVKPLVYSRSEDKVLLHAVR-GDLCWY--DLERHRVRSI 337 (366)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~i~~~~~~-~~~~~y--d~~t~~~~~v 337 (366)
+... ....-+++.++|+.|++...+ +.+..| |.++++++.+
T Consensus 282 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 282 STEG-DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp ECSS-SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred ecCC-CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 5421 114456777888667776544 556666 8899999877
No 114
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=84.27 E-value=3.8 Score=39.96 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=65.0
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCCCccC------CCCceEEEEEECCeEEEEEeecCCCC
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLPPIVG------IEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~------~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
..++..+|.+|..+..+ .|.++|.++.+ |+. +++.... .......++..+|+|++.... .
T Consensus 71 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d-g--- 138 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTY-DPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD-G--- 138 (677)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEE-CCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT-S---
T ss_pred eCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE-cCCCCccccccccccCCCCCceEECCEEEEEcCC-C---
Confidence 44788999999887644 69999998754 443 2221110 000112344567777765321 1
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCC-Cc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEeeee
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVG-GG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v~~~ 340 (366)
. |..|+-...+..|.......... .. ...|... ++.|++... ++.+++||.+|++..+-++.
T Consensus 139 --~--l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 --R--LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp --E--EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred --E--EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 2 33444322334566521100000 00 1233332 337777654 45799999999997765444
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.02 E-value=11 Score=39.35 Aligned_cols=186 Identities=9% Similarity=0.080 Sum_probs=92.9
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
.++........+. ++|..+++......... .....+.+.+. +.+-+.+ . ....+.+++..++...
T Consensus 974 ~~l~~g~~~g~i~-i~d~~~~~~~~~~~~h~------~~v~~l~~s~d-g~~l~s~-~------~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 974 EYVAFGDEDGAIK-IIELPNNRVFSSGVGHK------KAVRHIQFTAD-GKTLISS-S------EDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp SEEEEEETTSCCE-EEETTTTSCEEECCCCS------SCCCCEEECSS-SSCEEEE-C------SSSBEEEEETTTTEEE
T ss_pred CEEEEEcCCCCEE-EEEcCCCceeeecccCC------CceEEEEECCC-CCEEEEE-c------CCCEEEEEECCCCceE
Confidence 3444444556677 88887776544222111 11223444443 2222221 1 1456888998887766
Q ss_pred EccCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEE
Q 017748 188 RIQDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLC 264 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~ 264 (366)
.......... ...+. +|.+. .+..+ ..|..+|+.+.+... +..+... ...+... +|+..+..
T Consensus 1039 ~~~~~~~~v~---~~~~~~~~~l~-~~~~d------g~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1039 FLQAHQETVK---DFRLLQDSRLL-SWSFD------GTVKVWNVITGRIERDFTCHQGT-----VLSCAISSDATKFSST 1103 (1249)
T ss_dssp CCBCCSSCEE---EEEECSSSEEE-EEESS------SEEEEEETTTTCCCEEEECCSSC-----CCCEEECSSSSSCEEE
T ss_pred EEecCCCcEE---EEEEcCCCcEE-EEECC------CcEEEEECCCCceeEEEcccCCc-----EEEEEECCCCCEEEEE
Confidence 4332221111 01111 33332 22222 379999998765432 2222211 1122222 45555555
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
..+. .+.+|-++.... +..+.... +...-+++..+|..++....++.+..||+.+++..
T Consensus 1104 s~d~-----~v~iwd~~~~~~------~~~l~~h~-~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1104 SADK-----TAKIWSFDLLSP------LHELKGHN-GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCSS-----CCCEECSSSSSC------SBCCCCCS-SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cCCC-----cEEEEECCCcce------eeeeccCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 5444 789998875321 11121100 11445667778866666677777999999987754
No 116
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=83.76 E-value=20 Score=30.82 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=56.8
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+++.+.... ..... ....+... +|++.+.+..+. .+.+|-+... ..+..+.... .
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~------~~~~~~~~h~-~ 227 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDA-----SAKLWDVREG------MCRQTFTGHE-S 227 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS-----CEEEEETTTC------SEEEEECCCS-S
T ss_pred cEEEEECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCC-----cEEEEECCCC------eeEEEEcCCc-C
Confidence 688999988765332 22211 22233333 466666665554 8999987652 1223332111 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
...-+++.++++.++....++.+..||+++++...
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 14456677788666666777789999999887543
No 117
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=83.74 E-value=22 Score=31.08 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=35.8
Q ss_pred cEEEEEeccCCCCCceEEEEEecc-------CCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEe
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLN-------VGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSI 337 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~-------~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v 337 (366)
.+.+|-+... ..+..+.. ... ..-+++..++..++....+ +.+..||+++++....
T Consensus 208 ~i~i~d~~~~------~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 208 TVQISELSTL------RPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp EEEEEETTTT------EEEEEEECCC---CCCCC--EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred cEEEEECCCC------ceeEEEeccccccccCCc--cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence 8999988752 22333332 211 4455666777666666666 6799999998875444
No 118
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=83.70 E-value=6.1 Score=33.94 Aligned_cols=107 Identities=7% Similarity=-0.084 Sum_probs=56.8
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEecc
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~ 282 (366)
++.+|...... ..|..+|+.+.+.. .+.++... ....+... +|+ +++...... .+.+|-++.
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~~~v~~~~~~-----~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLNNHYG-----DIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEETTTT-----EEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCC----CCceeEECCCCCEEEEEeCCCC-----cEEEEeCCC
Confidence 45555544433 37999999987663 44665411 01122333 455 454443222 677776554
Q ss_pred CCCCCceEEEEEeccCCC-----ceeeEEEEecCCcEEEEEeeC------------CeEEEEeCCCCe
Q 017748 283 YGVNDSWTKLATLLNVGG-----GNVKPLVYSRSEDKVLLHAVR------------GDLCWYDLERHR 333 (366)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~~g~~i~~~~~~------------~~~~~yd~~t~~ 333 (366)
. ..+..+..... ....-+.+.++|+.+++...+ ..+..||+++++
T Consensus 75 ----~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 75 ----C--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ----T--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ----C--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 1 12223332110 002335677788677776643 679999998854
No 119
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=83.67 E-value=16 Score=30.84 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=57.8
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|+++.+...+.++... .....+... +|+..++. +. .+.+|-++. ...+..++....
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~~-----~v~~~d~~~------~~~~~~~~~~~~-- 281 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMD---VFYFSTAVNPAKTRAFGA--YN-----VLESFDLEK------NASIKRVPLPHS-- 281 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECS---SCEEEEEECTTSSEEEEE--ES-----EEEEEETTT------TEEEEEEECSSC--
T ss_pred ceEEEeCCCCCceEeecCCCC---CceeeEEECCCCCEEEEe--CC-----eEEEEECCC------CcCcceecCCCc--
Confidence 588999998876544332221 011123333 35443333 22 788887654 233344443222
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
..-+++.++|+.+++...++.+.+||+++++......+.
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 334567778867887766778999999998765443554
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.59 E-value=20 Score=30.64 Aligned_cols=194 Identities=7% Similarity=-0.021 Sum_probs=90.5
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR- 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~- 187 (366)
+++....+..+. |||..+++...+... ......+.+.+..+.-.++.... ...+.+|+.+++.-.
T Consensus 100 ~l~s~~~dg~v~-iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 100 KVFTASCDKTAK-MWDLSSNQAIQIAQH-------DAPVKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEEETTSEEE-EEETTTTEEEEEEEC-------SSCEEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSE
T ss_pred EEEEEcCCCcEE-EEEcCCCCceeeccc-------cCceEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEE
Confidence 344344455677 889888876664321 11334455533322222333221 446788887665321
Q ss_pred EccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee--eeeCCCCccCCCCceEEEEEEC---CeEEE
Q 017748 188 RIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF--YQVPLPPIVGIEGYYILLEALG---GCLCL 262 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~l~~~~---g~L~l 262 (366)
.+.. +. ....+...+.....+... ..+..+|+.+..- ..+..+... ......+.... ....+
T Consensus 166 ~~~~-~~----~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 166 VLQL-PE----RCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKH--QHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EEEC-SS----CEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSS--CEEEEEEEECTTSCEEEEE
T ss_pred EEec-CC----CceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccC--CCceEEEcccCCCCCCeEE
Confidence 1111 10 011222223333444333 2688888876543 333333222 11111111111 12233
Q ss_pred EEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC--------C---ceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 263 LCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG--------G---GNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--------~---~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
++..+. .+.+|.++.... -..+..+.... . ....-+++.+++..++....++.+..||+++
T Consensus 233 ~~~~dg-----~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 233 LGSIEG-----RVAIHYINPPNP---AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp EEETTS-----EEEEEESSCSCH---HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EecCCC-----cEEEEecCCCCc---cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 333333 899999876421 00111111100 0 0133455667775666666777899999999
Q ss_pred CeEEEe
Q 017748 332 HRVRSI 337 (366)
Q Consensus 332 ~~~~~v 337 (366)
++....
T Consensus 305 ~~~~~~ 310 (368)
T 3mmy_A 305 RTKLKT 310 (368)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 876544
No 121
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=83.07 E-value=18 Score=30.52 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred cEEEEEECCCceee-eeCCCC---ccCCCCceEEEEEE-CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec
Q 017748 223 DIIIAFDLKSEEFY-QVPLPP---IVGIEGYYILLEAL-GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL 296 (366)
Q Consensus 223 ~~i~~fD~~~~~~~-~i~lP~---~~~~~~~~~~l~~~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 296 (366)
..|..+|+.+.+.. .+.++. .. .. +... +| .|++...... .+.+|-++.. + .+..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~----~~--~~~s~dg~~l~v~~~~~~-----~v~~~d~~~~----~--~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTP----MV--PMVAPGGRIAYATVNKSE-----SLVKIDLVTG----E--TLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCC----CC--EEECTTSSEEEEEETTTT-----EEEEEETTTC----C--EEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCc----cc--eEEcCCCCEEEEEeCCCC-----eEEEEECCCC----C--eEeeEE
Confidence 37999999887653 345554 22 11 2222 45 4555443222 6777765441 1 222333
Q ss_pred cCCCc----eeeEEEEecCCcEEEEEe------------eCCeEEEEeCCCCeEEEeeee
Q 017748 297 NVGGG----NVKPLVYSRSEDKVLLHA------------VRGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 297 ~~~~~----~~~~~~~~~~g~~i~~~~------------~~~~~~~yd~~t~~~~~v~~~ 340 (366)
....+ ...-+++..+|+.+++.. .++.+..||+++++.......
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 21100 123356677786777764 346799999999887654343
No 122
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=82.83 E-value=21 Score=30.17 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=55.2
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYG 284 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~ 284 (366)
+|.+||..... ..|..+|+.+.+...+..|... ..++.. +|+|++.. .. .+.+|-.+.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~~~------~~i~~~~dG~l~v~~--~~-----~l~~~d~~~-- 82 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVTMDAPV------SSVALRQSGGYVATI--GT-----KFCALNWKE-- 82 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEECSSCE------EEEEEBTTSSEEEEE--TT-----EEEEEETTT--
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEeCCCce------EEEEECCCCCEEEEE--CC-----eEEEEECCC--
Confidence 47899987654 4899999998877666665432 223333 57766543 22 444443332
Q ss_pred CCCceEEEEEeccCCCceeeE--EEEecCCcEEEEEee------------CCeEEEEeCCC
Q 017748 285 VNDSWTKLATLLNVGGGNVKP--LVYSRSEDKVLLHAV------------RGDLCWYDLER 331 (366)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~--~~~~~~g~~i~~~~~------------~~~~~~yd~~t 331 (366)
+++..+....... ...++ +.+..+| .+++... ...++.+|+..
T Consensus 83 --g~~~~~~~~~~~~-~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 83 --QSAVVLATVDNDK-KNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp --TEEEEEEECCTTC-SSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred --CcEEEEEecCCCC-CCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCC
Confidence 3355444432211 11333 4445566 6666542 12478888763
No 123
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=82.68 E-value=21 Score=30.06 Aligned_cols=194 Identities=11% Similarity=0.018 Sum_probs=88.7
Q ss_pred eeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe-cCCc
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL-RVNS 185 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss-~t~~ 185 (366)
.++........++ ++|+.|++..+ ++...... .....+.|. +. ++. .. ...+..|+. +.-.
T Consensus 6 ~~lv~~~~~~~v~-~~d~~tG~~~w~~~~~~~~~------~~~~~~~pd-G~--ilv-s~------~~~V~~~d~~G~~~ 68 (276)
T 3no2_A 6 HLLVGGSGWNKIA-IINKDTKEIVWEYPLEKGWE------CNSVAATKA-GE--ILF-SY------SKGAKMITRDGREL 68 (276)
T ss_dssp EEEEECTTCSEEE-EEETTTTEEEEEEECCTTCC------CCEEEECTT-SC--EEE-EC------BSEEEEECTTSCEE
T ss_pred cEEEeeCCCCEEE-EEECCCCeEEEEeCCCccCC------CcCeEECCC-CC--EEE-eC------CCCEEEECCCCCEE
Confidence 3444444566778 99998888543 33321001 112233332 22 222 11 335777777 2235
Q ss_pred EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccC-CCCceEEEE-EECCeEEEE
Q 017748 186 WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVG-IEGYYILLE-ALGGCLCLL 263 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~-~~~~~~~l~-~~~g~L~l~ 263 (366)
|+.-..-... .......-+|.++....... ..+++||...+....+.+..... .......+. ..+|.++++
T Consensus 69 W~~~~~~~~~--~~~~~~~~dG~~lv~~~~~~-----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 69 WNIAAPAGCE--MQTARILPDGNALVAWCGHP-----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEEECCTTCE--EEEEEECTTSCEEEEEESTT-----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEEcCCCCcc--ccccEECCCCCEEEEecCCC-----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 7653311111 11113345677766654411 47899998655433333322210 000000111 225665554
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeee
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~ 339 (366)
...+. .+..|-.+ + +..|.... +... .. .....+|+.++....+.+++.+|++|++..+-+.
T Consensus 142 ~~~~~-----~v~~~d~~--G-~~~w~~~~--~~~~---~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 142 LFATS-----EVREIAPN--G-QLLNSVKL--SGTP---FS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ETTTT-----EEEEECTT--S-CEEEEEEC--SSCC---CE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred ecCCC-----EEEEECCC--C-CEEEEEEC--CCCc---cc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 43222 44443332 2 34455422 2111 11 2334556344444445579999999888766644
No 124
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=82.68 E-value=13 Score=33.81 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=47.6
Q ss_pred CCeEEEEEeecCCCC--CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe-eCCeEEEEeCCCC
Q 017748 257 GGCLCLLCKFDDDDD--DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA-VRGDLCWYDLERH 332 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~-~~~~~~~yd~~t~ 332 (366)
+++||+.......+. ...=.||++|- .++..+.+|+.... ..-+.+..+|+ .+|... .++.|.++|++|+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~~--P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGHE--IDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCCC--cCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 478888765321100 01346888886 45777888875322 33456677886 555555 3567999999999
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+..+-
T Consensus 404 kvv~t 408 (426)
T 3c75_H 404 EELRS 408 (426)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 97644
No 125
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=82.58 E-value=21 Score=30.13 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=93.6
Q ss_pred eeEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+++....+..+. |||..+++... +.. + ......+.+.|.. .+ ++... ....+.+++.+++.=
T Consensus 68 ~~l~s~s~d~~i~-vwd~~~~~~~~~~~~----h---~~~v~~~~~~~~~-~~-l~sgs------~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 68 NWIIVGSDDFRIR-VFNYNTGEKVVDFEA----H---PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENNWA 131 (304)
T ss_dssp TEEEEEETTSEEE-EEETTTCCEEEEEEC----C---SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEEGGGTTE
T ss_pred CEEEEECCCCEEE-EEECCCCcEEEEEeC----C---CCcEEEEEEcCCC-CE-EEEEC------CCCeEEEEECCCCcc
Confidence 3444444566778 99998877543 211 1 1234456666643 22 22221 144677888765411
Q ss_pred --EEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE---C
Q 017748 187 --RRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL---G 257 (366)
Q Consensus 187 --~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~---~ 257 (366)
..+..-. ..-.++.+ +|.+...+..+ ..|..+|+.+..-... ...... ....+... +
T Consensus 132 ~~~~~~~h~----~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~ 197 (304)
T 2ynn_A 132 LEQTFEGHE----HFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQER----GVNYVDYYPLPD 197 (304)
T ss_dssp EEEEECCCC----SCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECCCTT----CEEEEEECCSTT
T ss_pred hhhhhcccC----CcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccCCcC----cEEEEEEEEcCC
Confidence 1111100 00112222 23333333332 3788999876433211 111111 11122221 3
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+.+.+.+..+. .+.+|-++.. ..+.++.... ....-+++.+++..|+-...++.+..||+++++..+.
T Consensus 198 ~~~l~s~s~D~-----~i~iWd~~~~------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 198 KPYMITASDDL-----TIKIWDYQTK------SCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CCEEEEEETTS-----EEEEEETTTT------EEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCC-----eEEEEeCCCC------ccceeeCCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 44544444444 8999987652 2334443211 1144566777775555566677899999999987765
Q ss_pred ee
Q 017748 338 VE 339 (366)
Q Consensus 338 ~~ 339 (366)
+.
T Consensus 266 ~~ 267 (304)
T 2ynn_A 266 LN 267 (304)
T ss_dssp EC
T ss_pred cc
Confidence 33
No 126
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.47 E-value=20 Score=34.08 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred CcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee-CCCCccC--CCCceEEEEEECCeEEEEEeecCCCCCCc
Q 017748 200 TCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV-PLPPIVG--IEGYYILLEALGGCLCLLCKFDDDDDDRP 274 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~--~~~~~~~l~~~~g~L~l~~~~~~~~~~~~ 274 (366)
..++..+|++|..+... .+.++|.++. .|+.- ..|.... .......++..+|+|++....
T Consensus 62 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d-------- 126 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD-------- 126 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT--------
T ss_pred eccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC--------
Confidence 44788999999877543 5999999764 56543 2222110 000011234467777665421
Q ss_pred EEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEec--CCc-EEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 275 WDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSR--SED-KVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 275 l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~--~g~-~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
-.|..|+-...+..|.....-...... ...|..... +|. .|++... ++.+++||.+|++..+.
T Consensus 127 g~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 127 ASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred CEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 124445543234456653211100000 134444432 222 3444332 45799999999997765
No 127
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=82.28 E-value=28 Score=31.33 Aligned_cols=102 Identities=8% Similarity=-0.057 Sum_probs=56.2
Q ss_pred EEEEEECCCceeee--eCCCCccCCCCceEEEEEE-C---CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc
Q 017748 224 IIIAFDLKSEEFYQ--VPLPPIVGIEGYYILLEAL-G---GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN 297 (366)
Q Consensus 224 ~i~~fD~~~~~~~~--i~lP~~~~~~~~~~~l~~~-~---g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 297 (366)
.+..+|+.+..... +..... +......+... + |++.+.+..+. .+.+|-+.... - +..+..
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~d~-----~i~vwd~~~~~----~--~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDRDE-----HIKISHYPQCF----I--VDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEETTS-----CEEEEEESCTT----C--EEEECC
T ss_pred cEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcCCC-----cEEEEECCCCc----e--eeeeec
Confidence 68888887655432 111111 11122233333 4 55666555444 89999987531 1 122111
Q ss_pred CCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeee
Q 017748 298 VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVE 339 (366)
Q Consensus 298 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~ 339 (366)
.......-+++. +++.++....++.+..||+++++....+.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 111124455666 77677777778889999999998654434
No 128
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=81.92 E-value=23 Score=30.18 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=91.6
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE-EccCC-
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR-RIQDF- 192 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~- 192 (366)
...+. ++|+.|++... ++... . ..++.+++.. .+-++... ....+.+|+..++.-. .+...
T Consensus 68 ~~~v~-~~d~~~~~~~~~~~~~~-~-------~~~~~~s~dg-~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~~~ 131 (353)
T 3vgz_A 68 GGVVY-RLDPVTLEVTQAIHNDL-K-------PFGATINNTT-QTLWFGNT------VNSAVTAIDAKTGEVKGRLVLDD 131 (353)
T ss_dssp SEEEE-EECTTTCCEEEEEEESS-C-------CCSEEEETTT-TEEEEEET------TTTEEEEEETTTCCEEEEEESCC
T ss_pred CccEE-EEcCCCCeEEEEEecCC-C-------cceEEECCCC-CEEEEEec------CCCEEEEEeCCCCeeEEEEecCC
Confidence 34678 99999887543 33211 1 1134555543 33222211 1347888998876532 22110
Q ss_pred Ccc---ee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEECCe-EEEEE
Q 017748 193 PYF---WV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALGGC-LCLLC 264 (366)
Q Consensus 193 ~~~---~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~-L~l~~ 264 (366)
... .. ....++.+ +|...+++..... ..|..+|+++.+... ++.+... .....+. -+|+ |++..
T Consensus 132 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~s-~dg~~l~~~~ 203 (353)
T 3vgz_A 132 RKRTEEVRPLQPRELVADDATNTVYISGIGKE----SVIWVVDGGNIKLKTAIQNTGKM---STGLALD-SEGKRLYTTN 203 (353)
T ss_dssp CCCCSSCCCCEEEEEEEETTTTEEEEEEESSS----CEEEEEETTTTEEEEEECCCCTT---CCCCEEE-TTTTEEEEEC
T ss_pred CccccccCCCCCceEEECCCCCEEEEEecCCC----ceEEEEcCCCCceEEEecCCCCc---cceEEEC-CCCCEEEEEc
Confidence 000 00 00112333 5664444442211 379999999876543 3422211 0111111 2444 44433
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccC---CCceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeee
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV---GGGNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~ 340 (366)
. +. .+.+|-++. ...+..+... ......-+++..+|+.+++...+ +.+..||+++++.......
T Consensus 204 ~-~~-----~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 204 A-DG-----ELITIDTAD------NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp T-TS-----EEEEEETTT------TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred C-CC-----eEEEEECCC------CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 2 22 566665443 2233333321 11113336677888777776644 6799999999887654344
No 129
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=81.86 E-value=40 Score=32.88 Aligned_cols=179 Identities=8% Similarity=0.058 Sum_probs=88.6
Q ss_pred CccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 116 RRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
...+. |||..+++... +... .....++.+.|.. .+ ++... ....+.+|+..++.... +....
T Consensus 34 ~g~v~-iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~-~~-l~~~~------~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 34 SGRVE-IWNYETQVEVRSIQVT-------ETPVRAGKFIARK-NW-IIVGS------DDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp TSEEE-EEETTTTEEEEEEECC-------SSCEEEEEEEGGG-TE-EEEEE------TTSEEEEEETTTCCEEEEEECCS
T ss_pred CCEEE-EEECCCCceEEEEecC-------CCcEEEEEEeCCC-CE-EEEEe------CCCeEEEEECCCCcEEEEEecCC
Confidence 44566 88877765433 2211 1234456666642 23 22222 14578899988776532 21111
Q ss_pred cceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCc-eeeee-CCCCccCCCCceEEEEEE--CCeEEEEEeec
Q 017748 194 YFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSE-EFYQV-PLPPIVGIEGYYILLEAL--GGCLCLLCKFD 267 (366)
Q Consensus 194 ~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~-~~~~i-~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~ 267 (366)
... .++. -+|.....+..+ ..|..+|+.++ ..... ..... ....+... +|.+.+....+
T Consensus 98 ~~v----~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 98 DYI----RSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp SCE----EEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETT
T ss_pred CCE----EEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCC
Confidence 111 0111 134433333322 37899998875 33222 21111 22334444 34555555544
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec--CCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR--SEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~--~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
. .+.+|-+.... ... .+..........+.+.. ++..++....++.+..||+++++...
T Consensus 163 g-----~v~vwd~~~~~--~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 163 R-----TVKVWSLGQST--PNF----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp S-----EEEEEETTCSS--CSE----EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred C-----eEEEEECCCCc--cee----EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 4 89999886532 112 12111101133445554 66566666777789999999887543
No 130
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=81.70 E-value=23 Score=30.07 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=43.9
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCC-CCeEEEe
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE-RHRVRSI 337 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~-t~~~~~v 337 (366)
.+.+.+..+. .+.||.++... ...|.....-.... ...-+++.++|..|.....++.+..|+.. .+.|+.+
T Consensus 229 ~~las~s~D~-----~v~iw~~~~~~-~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~ 300 (316)
T 3bg1_A 229 STIASCSQDG-----RVFIWTCDDAS-SNTWSPKLLHKFND--VVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 300 (316)
T ss_dssp CEEEEEETTC-----EEEEEECSSTT-CCCCBCCEEEECSS--CEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEE
T ss_pred ceEEEEcCCC-----eEEEEEccCcc-ccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEe
Confidence 4444444444 89999987632 12343211111111 14456677888566666777779999976 5678877
Q ss_pred eeec
Q 017748 338 VEID 341 (366)
Q Consensus 338 ~~~~ 341 (366)
.++.
T Consensus 301 ~~~~ 304 (316)
T 3bg1_A 301 SDVN 304 (316)
T ss_dssp EECC
T ss_pred eecc
Confidence 4454
No 131
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.47 E-value=22 Score=29.60 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=91.1
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-c
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-S 185 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~ 185 (366)
+++++....+..+. |||..+++....-... ......+.+.+. +.+-+.+.. ...+.+++..+. .
T Consensus 29 ~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~l~~~~~-------dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 29 DSKVASVSRDGTVR-LWSKDDQWLGTVVYTG------QGFLNSVCYDSE-KELLLFGGK-------DTMINGVPLFATSG 93 (313)
T ss_dssp TTEEEEEETTSEEE-EEEESSSEEEEEEEEC------SSCEEEEEEETT-TTEEEEEET-------TSCEEEEETTCCTT
T ss_pred CCEEEEEEcCCcEE-EEECCCCEEEEEeecC------CccEEEEEECCC-CCEEEEecC-------CCeEEEEEeeecCC
Confidence 44554444556677 8888776644332221 113445666663 233222211 334566665432 1
Q ss_pred EEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEe
Q 017748 186 WRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCK 265 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~ 265 (366)
.+.+..+... ...-..+..+|.....+..+ ..|..+|.. +....+...... -........++.+.++..
T Consensus 94 ~~~~~~~~~~-~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~-~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 94 EDPLYTLIGH-QGNVCSLSFQDGVVISGSWD------KTAKVWKEG-SLVYNLQAHNAS---VWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp SCC-CEECCC-SSCEEEEEEETTEEEEEETT------SEEEEEETT-EEEEEEECCSSC---EEEEEEEETTTTEEEEEE
T ss_pred CCcccchhhc-ccCEEEEEecCCEEEEEeCC------CCEEEEcCC-cEEEecccCCCc---eeEEEEccCCCCEEEEEE
Confidence 1111111000 01112344566655555443 378888832 222222222211 011222222566666666
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+. .+.+|-... ....+.........-+.+..++ .++....++.+..||+++++....
T Consensus 163 ~d~-----~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 163 ADK-----TIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp TTS-----CEEEEETTE--------EEEEECSSCSSCEEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCC-----CEEEEecCc--------eEEEEeccCcccEEEEEEcCCC-eEEEccCCCeEEEEECCchhhhhh
Confidence 554 899996221 1222222111124556666777 566667777899999998875544
No 132
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=81.38 E-value=25 Score=30.08 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=44.5
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+|+..++...+. .+.+|-+... ...+..+.... ....-+.+..++..++....++.+..||+++++...
T Consensus 186 ~~~~l~~~~~dg-----~i~i~d~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGHKDG-----KISKYDVSNN-----YEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEETTS-----EEEEEETTTT-----TEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCC-----EEEEEECCCC-----cEeEEEEecCC-CceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 455555555444 8999987752 22333333211 114445666777667777777889999999988765
Q ss_pred eee
Q 017748 337 IVE 339 (366)
Q Consensus 337 v~~ 339 (366)
.+.
T Consensus 255 ~~~ 257 (369)
T 3zwl_B 255 KYE 257 (369)
T ss_dssp EEE
T ss_pred eec
Confidence 533
No 133
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=80.87 E-value=26 Score=29.98 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=91.3
Q ss_pred cCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccC
Q 017748 114 DSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQD 191 (366)
Q Consensus 114 ~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~ 191 (366)
..+..+. +||..+++... +...+. ....+.+.|.. .+-+.. . ....+.+|+.+++.-.. +..
T Consensus 99 s~D~~i~-lWd~~~~~~~~~~~~~~~-------~~~~~~~spdg-~~l~~g-~------~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 99 SLDAHIR-LWDLENGKQIKSIDAGPV-------DAWTLAFSPDS-QYLATG-T------HVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ETTSEEE-EEETTTTEEEEEEECCTT-------CCCCEEECTTS-SEEEEE-C------TTSEEEEEETTTCSEEEEEEC
T ss_pred eCCCcEE-EEECCCCCEEEEEeCCCc-------cEEEEEECCCC-CEEEEE-c------CCCcEEEEEcCCCceeEEecC
Confidence 3456677 89988876533 222111 11234455532 222221 1 14467788877654221 111
Q ss_pred CCcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEEEeec
Q 017748 192 FPYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLLCKFD 267 (366)
Q Consensus 192 ~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~ 267 (366)
..... .++. -+|.....+..+ ..|..+|+++.+... +...... ...+... +|++.+.+..+
T Consensus 163 ~~~~v----~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 163 RGKFI----LSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAMP-----IRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp SSSCE----EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSC-----CCEEEECTTSCEEEEECTT
T ss_pred CCceE----EEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCCc-----eeEEEEcCCCCEEEEEcCC
Confidence 00000 0111 145544444333 368899998876532 2322211 1123333 46655555544
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. .+.||-++.. .....+.... ....-+++.+++..++....++.+..||+++++....
T Consensus 228 g-----~i~iwd~~~~------~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 228 G-----YIKIYDVQHA------NLAGTLSGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp S-----CEEEEETTTC------CEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred C-----eEEEEECCCc------ceeEEEcCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 4 8999988752 1223332111 1144466777776666667777899999999875443
No 134
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=80.54 E-value=23 Score=29.33 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=82.4
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcc-eEECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCS-VFVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.=.....++... +..+ ...++.+|-++... ..+..||.++.+- ..++.|.. .
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~~------~~v~v~D~~tl~~~~ti~~~~~------G 107 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWRN------HEGFVYDLATLTPRARFRYPGE------G 107 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEECSSC------C
T ss_pred CceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEeeC------CEEEEEECCcCcEEEEEeCCCC------c
Confidence 467889999887543322333221 1123 44678888887554 4899999987554 55566542 2
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceeeEEEE-ecCCcEEEEEee-CCeEEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVKPLVY-SRSEDKVLLHAV-RGDLCW 326 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~-~~~g~~i~~~~~-~~~~~~ 326 (366)
.-|+.-+++|++... .. . |++++... =..+.+|..... ....+..+ +.+| +|+.... .+.+..
T Consensus 108 wglt~dg~~L~vSdg-s~-----~--l~~iDp~t----~~~~~~I~V~~~g~~~~~lNeLe~~~G-~lyanvw~s~~I~v 174 (243)
T 3mbr_X 108 WALTSDDSHLYMSDG-TA-----V--IRKLDPDT----LQQVGSIKVTAGGRPLDNLNELEWVNG-ELLANVWLTSRIAR 174 (243)
T ss_dssp CEEEECSSCEEEECS-SS-----E--EEEECTTT----CCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTTTEEEE
T ss_pred eEEeeCCCEEEEECC-CC-----e--EEEEeCCC----CeEEEEEEEccCCcccccceeeEEeCC-EEEEEECCCCeEEE
Confidence 334555678888654 22 3 67777521 223444443211 00111111 2245 8887654 457999
Q ss_pred EeCCCCeEEEeeeecC
Q 017748 327 YDLERHRVRSIVEIDD 342 (366)
Q Consensus 327 yd~~t~~~~~v~~~~~ 342 (366)
.|++|++.....++.+
T Consensus 175 IDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQA 190 (243)
T ss_dssp ECTTTCBEEEEEECGG
T ss_pred EECCCCCEEEEEECCc
Confidence 9999999865557653
No 135
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=80.51 E-value=32 Score=30.79 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=91.3
Q ss_pred ceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCC
Q 017748 146 SLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRN 222 (366)
Q Consensus 146 ~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~ 222 (366)
...++++|...+. |... +. ....+++++.....-+.+..-.. ....++.+ +|.+||......
T Consensus 160 ~p~glavD~~~~~--lY~~---d~--~~~~I~~~~~~g~~~~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~----- 224 (400)
T 3p5b_L 160 APDGLAVDWIHSN--IYWT---DS--VLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTP----- 224 (400)
T ss_dssp CEEEEEEETTTTE--EEEE---ET--TTTEEEEECTTTCSEEEEEECSS---CCEEEEEEETTTTEEEEEECSSS-----
T ss_pred CcccEEEEecCCc--eEEE---EC--CCCeEEEEeCCCCceEEEEeCCC---CCcceEEEecccCeEEEEeCCCC-----
Confidence 4567888876542 2222 11 13356777776555444321000 11224444 589999764321
Q ss_pred cEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..|..+|+....-..+.- ... ...--|+.- +++||++.... -.|+..+-.+. .... +.. ....+
T Consensus 225 ~~I~~~~~dG~~~~~~~~-~~l---~~P~glavd~~~~~lY~aD~~~-------~~I~~~d~dG~-~~~~-~~~-~~~~l 290 (400)
T 3p5b_L 225 AKIKKGGLNGVDIYSLVT-ENI---QWPNGITLDLLSGRLYWVDSKL-------HSISSIDVNGG-NRKT-ILE-DEKRL 290 (400)
T ss_dssp CCEEEEETTSCSCEEEEC-SSC---SCEEEEEEETTTTEEEEEETTT-------TEEEEEETTSC-CCEE-EEE-CSSTT
T ss_pred CEEEEEeCCCCccEEEEE-CCC---CceEEEEEEeCCCEEEEEECCC-------CEEEEEeCCCC-ccEE-EEe-CCCCC
Confidence 268999987543333211 111 112234443 68999986543 24566654332 1111 111 11223
Q ss_pred ceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEeeeecCcccCeeeeeEEecCc
Q 017748 301 GNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~sl 357 (366)
..|.++...++.||+.... .++..+|..+++-..+.. .+ ........+|.+..
T Consensus 291 --~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~-~~-~~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 291 --AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-EN-LLSPEDMVLFHNLT 344 (400)
T ss_dssp --SSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE-CS-CSCEEEEEEESGGG
T ss_pred --CCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe-cC-CCCCceEEEEeecc
Confidence 6677777666688887654 459999977765433312 22 33345555665544
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=80.38 E-value=23 Score=29.04 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=95.7
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC-CcEEEccCCCc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV-NSWRRIQDFPY 194 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~~ 194 (366)
...++ ++|+.+++...+..... ....+.+.|.. .+-++. . ...+.+++..+ +....+.....
T Consensus 21 ~~~i~-~~d~~~~~~~~~~~~~~-------~v~~~~~spdg-~~l~~~--~------~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 21 RSSIE-IFNIRTRKMRVVWQTPE-------LFEAPNWSPDG-KYLLLN--S------EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CEEEE-EEETTTTEEEEEEEESS-------CCEEEEECTTS-SEEEEE--E------TTEEEEEESSSCCSCEECCCTTC
T ss_pred ceeEE-EEeCCCCceeeeccCCc-------ceEeeEECCCC-CEEEEE--c------CCeEEEEeCCCCCCceEeccccc
Confidence 45678 99999988776654321 23345565543 333322 1 34788999988 77665542211
Q ss_pred ceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCC
Q 017748 195 FWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDD 272 (366)
Q Consensus 195 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~ 272 (366)
......-...-+|.....+..... ....|..+|..+.+...+..+.. ...+... +|+ |++....+.
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~spdg~~l~~~~~~~~---- 151 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP------SYWHGWSPDGKSFTYCGIRDQ---- 151 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS------EEEEEECTTSSEEEEEEEETT----
T ss_pred cccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC------ccceEECCCCCEEEEEECCCC----
Confidence 000011011125654444432211 12478899988776554432221 1122232 455 444444443
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CC--eEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RG--DLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~--~~~~yd~~t~~~~~v 337 (366)
.+.||.++..+ .... .+.... ....-+.+..+|..|++... ++ +++.+++.++..+.+
T Consensus 152 -~~~l~~~~~~~--~~~~---~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 152 -VFDIYSMDIDS--GVET---RLTHGE-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp -EEEEEEEETTT--CCEE---ECCCSS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred -ceEEEEEECCC--Ccce---EcccCC-CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 78999987532 1121 221111 11344556677766666653 32 477778777777666
No 137
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=80.29 E-value=29 Score=30.30 Aligned_cols=189 Identities=10% Similarity=0.067 Sum_probs=94.7
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
+++.......+. |||...+....+... ......+.+.+. +.+ ++.... ...+.+|+..++.-..
T Consensus 122 ~l~~~~~dg~i~-i~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~-l~~~~~------d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 122 SIVTGVENGELR-LWNKTGALLNVLNFH-------RAPIVSVKWNKD-GTH-IISMDV------ENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEETTSCEE-EEETTSCEEEEECCC-------CSCEEEEEECTT-SSE-EEEEET------TCCEEEEETTTTEEEE
T ss_pred EEEEEeCCCeEE-EEeCCCCeeeeccCC-------CccEEEEEECCC-CCE-EEEEec------CCeEEEEECCCCcEEE
Confidence 444444556688 898433334444321 123445666654 233 222221 3457788887765432
Q ss_pred ccCCCccee-------------cCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEE
Q 017748 189 IQDFPYFWV-------------TGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLE 254 (366)
Q Consensus 189 ~~~~~~~~~-------------~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~ 254 (366)
.-....... ......+..+..+..+... ..|..+|+.+.+.... ..... ....+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~-----~i~~~~ 254 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKLIGHHG-----PISVLE 254 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEECCCSS-----CEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeeeccCCC-----ceEEEE
Confidence 211110000 0121223333333333333 3699999987644322 22111 223344
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
.. +|++.++...+. .+.+|.++... .+..+.... ....-+.+..++ .++....++.+..||+++++
T Consensus 255 ~~~~~~~l~~~~~d~-----~i~i~d~~~~~------~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 255 FNDTNKLLLSASDDG-----TLRIWHGGNGN------SQNCFYGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EETTTTEEEEEETTS-----CEEEECSSSBS------CSEEECCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCEEEEEcCCC-----EEEEEECCCCc------cceEecCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 44 466555555444 89999887632 122222111 114445666677 67777778889999999988
Q ss_pred EEEe
Q 017748 334 VRSI 337 (366)
Q Consensus 334 ~~~v 337 (366)
....
T Consensus 322 ~~~~ 325 (425)
T 1r5m_A 322 LLAL 325 (425)
T ss_dssp EEEE
T ss_pred EeEe
Confidence 6554
No 138
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=80.27 E-value=30 Score=30.42 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=97.1
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+.+++.......+. |||..+++....-... ......+.+.|.. .+ ++... ....+.+|+..++.=
T Consensus 109 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~s~s------~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIK-VLDSNFNLQREIDQAH------VSEITKLKFFPSG-EA-LISSS------QDMQLKIWSVKDGSN 173 (420)
T ss_dssp SCEEEEEETTSCEE-EECTTSCEEEEETTSS------SSCEEEEEECTTS-SE-EEEEE------TTSEEEEEETTTCCC
T ss_pred CCEEEEEECCCCEE-EEeCCCcceeeecccc------cCccEEEEECCCC-CE-EEEEe------CCCeEEEEeCCCCcC
Confidence 33444444566788 9998888776543221 1234566776643 32 22222 145688888876431
Q ss_pred -EEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEE-------
Q 017748 187 -RRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEA------- 255 (366)
Q Consensus 187 -~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~------- 255 (366)
+.+..-... -.++.+ +|.....+..+ ..|..+|+.+.+... +..+.... .....+..
T Consensus 174 ~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 174 PRTLIGHRAT----VTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPH--DGVNSIALFVGTDRQ 241 (420)
T ss_dssp CEEEECCSSC----EEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTT--CCEEEEEEEECCCSS
T ss_pred ceEEcCCCCc----EEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCC--CCccEEEEecCCcce
Confidence 111111100 011211 45544444333 268899998765433 33322210 01111111
Q ss_pred ---------------ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc-EEEEEe
Q 017748 256 ---------------LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED-KVLLHA 319 (366)
Q Consensus 256 ---------------~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~ 319 (366)
-+|++.+++..++ .+.+|-+.... ....+.........-+++.+++. .++...
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKE------QTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCC------EEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCc------eeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 1466666555444 79999886521 23333221111245566677775 555566
Q ss_pred eCCeEEEEeCCCCe
Q 017748 320 VRGDLCWYDLERHR 333 (366)
Q Consensus 320 ~~~~~~~yd~~t~~ 333 (366)
.++.+..||+++++
T Consensus 311 ~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 311 ENGMLAQWDLRSPE 324 (420)
T ss_dssp TTSEEEEEETTCTT
T ss_pred CCCeEEEEEcCCCc
Confidence 67789999999864
No 139
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=80.08 E-value=26 Score=29.46 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCC---cEEEEEeeCCeEEEEeCCCC
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSE---DKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~yd~~t~ 332 (366)
+++.+.+..+. .+.||-++.. ...|.....+..-. ....-+++.+++ ..+.-...++.+..||+++.
T Consensus 170 ~~~l~sgs~D~-----~v~lwd~~~~--~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGGADN-----LVKIWKYNSD--AQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEETTS-----CEEEEEEETT--TTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEcCCC-----cEEEEEEcCC--CceEEEEEEecCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 34555455444 8999998763 24576666664211 124455666653 23444556777999998774
No 140
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=79.65 E-value=28 Score=29.64 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=94.9
Q ss_pred eEEeecCCccEEEEEeccccc--eeecCCcCCCCCCCCcceEEEeeecC-CCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 109 LLALEDSRRNIMLLLNPLTKR--HRVLPTFYRDLSRCVPSLEGFGFDVG-SGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~--~~~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+++....+..+. +||..+++ ...+........ .....+.+.+. +.+-+.+.... ....+.+|+..++.
T Consensus 131 ~l~~~~~d~~i~-vwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~l~~~~-----~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 131 EIVTGSRDGTVK-VWDPRQKDDPVANMEPVQGENK---RDCWTVAFGNAYNQEERVVCAGY-----DNGDIKLFDLRNMA 201 (357)
T ss_dssp EEEEEETTSCEE-EECTTSCSSCSEEECCCTTSCC---CCEEEEEEECCCC-CCCEEEEEE-----TTSEEEEEETTTTE
T ss_pred EEEEEeCCCeEE-EEeCCCCCCcceeccccCCCCC---CceEEEEEEeccCCCCCEEEEEc-----cCCeEEEEECccCc
Confidence 444444556778 99988765 333333222111 12333333221 11112222221 13578889888765
Q ss_pred EEEccCCCcceecCCcceEE-----CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEEC-C
Q 017748 186 WRRIQDFPYFWVTGTCSVFV-----NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEALG-G 258 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~-----~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~-g 258 (366)
=.......... .++.+ +|.....+..+ ..|..+|+.+.+... +.......+......+.... |
T Consensus 202 ~~~~~~~~~~v----~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 202 LRWETNIKNGV----CSLEFDRKDISMNKLVATSLE------GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp EEEEEECSSCE----EEEEESCSSSSCCEEEEEEST------TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE
T ss_pred eeeecCCCCce----EEEEcCCCCCCCCEEEEECCC------CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC
Confidence 33221111111 12222 45555555443 378888887653211 11000000111233344443 5
Q ss_pred e-EEEEEeecCCCCCCcEEEEEeccCCC-------------CCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCe
Q 017748 259 C-LCLLCKFDDDDDDRPWDLWVMKEYGV-------------NDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGD 323 (366)
Q Consensus 259 ~-L~l~~~~~~~~~~~~l~iW~l~~~~~-------------~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~ 323 (366)
+ +.+.+..+. .+.+|.++.... ..++..+..+.... ....-+++..+|..+++ ...++.
T Consensus 272 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 272 RELFLTAGGAG-----GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST-QPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEEEEEEETTS-----EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS-SCEEEEEECSSSTTEEEEEETTSE
T ss_pred CcEEEEEeCCC-----cEEEeecCCCcccccccCCCCccccccccceeeccccCC-CCeeEEEEcCCCCeEEEEecCCCc
Confidence 5 444444443 899999875321 12455565554322 11445667777755664 556778
Q ss_pred EEEEeCCCCe
Q 017748 324 LCWYDLERHR 333 (366)
Q Consensus 324 ~~~yd~~t~~ 333 (366)
+..||+.+..
T Consensus 346 i~iw~~~~~~ 355 (357)
T 3i2n_A 346 VRVLIVTKLN 355 (357)
T ss_dssp EEEEEECC--
T ss_pred EEEEECCCcc
Confidence 9999988643
No 141
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=79.53 E-value=28 Score=29.67 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=39.9
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC-CceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG-GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
|++.+++..+. .+.+|.++... ........+.... .....-+++..++..|+....++.+..||+.+
T Consensus 299 ~~~l~~~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQVG-----KLYVWDLEVED--PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEECTTS-----CEEEEECCSSS--GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEecCC-----cEEEEECCCCC--CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 66666555444 89999998732 1122333443321 11245566777786676677788899999864
No 142
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=79.27 E-value=20 Score=30.04 Aligned_cols=109 Identities=6% Similarity=-0.066 Sum_probs=58.7
Q ss_pred CCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|. +||..... ..|..+|+.++ +..+..|... ...++.. +|+|+++..... .+.+|-.+.
T Consensus 38 ~g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~~~~~-----~~~l~~~~dg~l~v~~~~~~-----~i~~~d~~~- 99 (296)
T 3e5z_A 38 ARSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMHPSHH-----QNGHCLNKQGHLIACSHGLR-----RLERQREPG- 99 (296)
T ss_dssp GGTEEEEEEGGG------TEEEEEETTSC-EEEEESSCSS-----EEEEEECTTCCEEEEETTTT-----EEEEECSTT-
T ss_pred CCCEEEEEeCCC------CEEEEEECCCC-eEEEECCCCC-----cceeeECCCCcEEEEecCCC-----eEEEEcCCC-
Confidence 465 89988655 37999999988 6666554432 2233433 678876554222 566654433
Q ss_pred CCCCceEEEEEecc-CCCceeeEEEEecCCcEEEEEee------------------CCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATLLN-VGGGNVKPLVYSRSEDKVLLHAV------------------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i~~-~~~~~~~~~~~~~~g~~i~~~~~------------------~~~~~~yd~~t~~~~~v 337 (366)
++......... .......-+++..+| .+++... ...++.||++ ++.+.+
T Consensus 100 ---g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 100 ---GEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp ---CCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred ---CcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 22333221111 001012235566666 6776421 2368888887 665554
No 143
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=78.99 E-value=32 Score=29.89 Aligned_cols=66 Identities=9% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCeEEEEEeecCCCCCCc-EEEEEeccCCCCCceEEEEEeccC-CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 257 GGCLCLLCKFDDDDDDRP-WDLWVMKEYGVNDSWTKLATLLNV-GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~-l~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+|++.+.+..+. . +.||-+.. ...+..+... ......-+++.++|..++....++.+..||++++.
T Consensus 206 ~g~~l~s~s~d~-----~~v~iwd~~~------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCSQDG-----TIIRVFKTED------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEETTC-----SEEEEEETTT------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCC-----CEEEEEECCC------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 466666555544 7 99998875 2334455421 11125556777888666666777789999998764
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=78.82 E-value=36 Score=30.42 Aligned_cols=185 Identities=11% Similarity=0.026 Sum_probs=97.4
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..+. ++|..++..+.|.... .....+.+.|.. ++ ++... .+.....+.+++..++..+.+...+...
T Consensus 159 ~~i~-i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg-~~-la~~s---~~~~~~~i~~~d~~tg~~~~l~~~~~~~ 225 (415)
T 2hqs_A 159 YELR-VSDYDGYNQFVVHRSP-------QPLMSPAWSPDG-SK-LAYVT---FESGRSALVIQTLANGAVRQVASFPRHN 225 (415)
T ss_dssp EEEE-EEETTSCSCEEEEEES-------SCEEEEEECTTS-SE-EEEEE---CTTSSCEEEEEETTTCCEEEEECCSSCE
T ss_pred ceEE-EEcCCCCCCEEEeCCC-------CcceeeEEcCCC-CE-EEEEE---ecCCCcEEEEEECCCCcEEEeecCCCcc
Confidence 5678 9998776655553321 123345555542 22 22222 1112357899999888776654332211
Q ss_pred ecCCcceE--ECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCC
Q 017748 197 VTGTCSVF--VNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDD 272 (366)
Q Consensus 197 ~~~~~~v~--~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~ 272 (366)
.++. -+|. +++...... ...|..+|+.+.+...+.-... ....+... +|+..++......
T Consensus 226 ----~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~-----~~~~~~~spdg~~l~~~s~~~g--- 289 (415)
T 2hqs_A 226 ----GAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS-----NNTEPTWFPDSQNLAFTSDQAG--- 289 (415)
T ss_dssp ----EEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS-----CEEEEEECTTSSEEEEEECTTS---
T ss_pred ----cCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC-----cccceEECCCCCEEEEEECCCC---
Confidence 1122 2465 444443221 1369999999877654422111 12223333 5664444443221
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~~~v 337 (366)
...||.++-.+. + ...+.... ....-..+..+|+.|++...+ ..++.+|+++++.+.+
T Consensus 290 -~~~i~~~d~~~~--~---~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 290 -RPQVYKVNINGG--A---PQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp -SCEEEEEETTSS--C---CEECCCSS-SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred -CcEEEEEECCCC--C---EEEEecCC-CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 567777765322 1 12222111 113345667888777777653 3699999999998766
No 145
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=78.51 E-value=29 Score=29.23 Aligned_cols=137 Identities=9% Similarity=-0.098 Sum_probs=75.8
Q ss_pred EEEEEecCCcEEEccCCCcceecCCcce-EECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEE
Q 017748 176 VAVFSLRVNSWRRIQDFPYFWVTGTCSV-FVNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILL 253 (366)
Q Consensus 176 ~~vyss~t~~W~~~~~~~~~~~~~~~~v-~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l 253 (366)
+.+++..++.=...- ++... +..++ ..++.+|-++... ..+.+||.++.+- ..++.+... .-|
T Consensus 77 v~~iD~~Tgkv~~~~-l~~~~--FgeGit~~g~~Ly~ltw~~------~~v~V~D~~Tl~~~~ti~~~~eG------wGL 141 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RLGNI--FAEGLASDGERLYQLTWTE------GLLFTWSGMPPQRERTTRYSGEG------WGL 141 (268)
T ss_dssp EEECCSSCSSCSEEE-ECTTC--CEEEEEECSSCEEEEESSS------CEEEEEETTTTEEEEEEECSSCC------CCE
T ss_pred EEEEECCCCcEEeEE-CCCCc--ceeEEEEeCCEEEEEEccC------CEEEEEECCcCcEEEEEeCCCce------eEE
Confidence 677777765321111 22111 11233 4567888776554 4899999998554 556665322 234
Q ss_pred EEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--c--eeeEEEEecCCcEEEEEee-CCeEEEEe
Q 017748 254 EALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--G--NVKPLVYSRSEDKVLLHAV-RGDLCWYD 328 (366)
Q Consensus 254 ~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~--~~~~~~~~~~g~~i~~~~~-~~~~~~yd 328 (366)
+.-+++|++... . =.|+.++... =..+.+|....- . ...-+.+ .+| +|+.... .+.+...|
T Consensus 142 t~Dg~~L~vSdG-s-------~~l~~iDp~T----~~v~~~I~V~~~g~~v~~lNeLe~-~dG-~lyanvw~s~~I~vID 207 (268)
T 3nok_A 142 CYWNGKLVRSDG-G-------TMLTFHEPDG----FALVGAVQVKLRGQPVELINELEC-ANG-VIYANIWHSSDVLEID 207 (268)
T ss_dssp EEETTEEEEECS-S-------SEEEEECTTT----CCEEEEEECEETTEECCCEEEEEE-ETT-EEEEEETTCSEEEEEC
T ss_pred ecCCCEEEEECC-C-------CEEEEEcCCC----CeEEEEEEeCCCCcccccccccEE-eCC-EEEEEECCCCeEEEEe
Confidence 455778888653 2 2466677521 223444443211 0 1111222 255 8887764 45699999
Q ss_pred CCCCeEEEeeeec
Q 017748 329 LERHRVRSIVEID 341 (366)
Q Consensus 329 ~~t~~~~~v~~~~ 341 (366)
++|++.....++.
T Consensus 208 p~TG~V~~~Idl~ 220 (268)
T 3nok_A 208 PATGTVVGVIDAS 220 (268)
T ss_dssp TTTCBEEEEEECH
T ss_pred CCCCcEEEEEECC
Confidence 9999986554775
No 146
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=78.23 E-value=35 Score=29.99 Aligned_cols=186 Identities=10% Similarity=0.010 Sum_probs=88.8
Q ss_pred CCccEEEEEecccccee--ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEcc-C
Q 017748 115 SRRNIMLLLNPLTKRHR--VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQ-D 191 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~--~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~-~ 191 (366)
.+..+. |+|....... .++....+ ......+.+.|..+.+-+.+- ....+.+|+..++...... .
T Consensus 55 ~~g~i~-v~~~~~~~~~~~~~~~~~~h----~~~V~~~~~~p~~~~~l~s~s-------~dg~v~vw~~~~~~~~~~~~~ 122 (402)
T 2aq5_A 55 GGGAFL-VLPLGKTGRVDKNVPLVCGH----TAPVLDIAWCPHNDNVIASGS-------EDCTVMVWEIPDGGLVLPLRE 122 (402)
T ss_dssp SSCCEE-EEETTCCEECCTTCCCBCCC----SSCEEEEEECTTCTTEEEEEE-------TTSEEEEEECCTTCCSSCBCS
T ss_pred CCCEEE-EEECccCCCCCCCCceEecC----CCCEEEEEeCCCCCCEEEEEe-------CCCeEEEEEccCCCCccccCC
Confidence 455677 8886443221 11111111 234566777774444433331 1456889988776432110 0
Q ss_pred CCcceecCC---cceEE--CC-cEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC-CCccCCCCceEEEEEE-CCeEEEE
Q 017748 192 FPYFWVTGT---CSVFV--NG-ALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL-PPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 192 ~~~~~~~~~---~~v~~--~G-~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
......... ..+.+ +| .+...+..+ ..|..+|+.+.+...... .... .....+... +|++.+.
T Consensus 123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWDVGTGAAVLTLGPDVHP---DTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEETTTTEEEEEECTTTCC---SCEEEEEECTTSSCEEE
T ss_pred ceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEECCCCCccEEEecCCCC---CceEEEEECCCCCEEEE
Confidence 000111111 12222 23 233333332 368999999876533221 1111 122233333 5666665
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEe-ccCCCceeeEEEEecCCcEEEEEe----eCCeEEEEeCCCCe
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATL-LNVGGGNVKPLVYSRSEDKVLLHA----VRGDLCWYDLERHR 333 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~i~~~~----~~~~~~~yd~~t~~ 333 (366)
+..+. .+.+|-++.. ..+..+ ....-....-+.+..++ .++... .++.+..||+++.+
T Consensus 194 ~~~d~-----~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 194 SCRDK-----RVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EETTS-----EEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCS
T ss_pred EecCC-----cEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCcccc
Confidence 55554 8999987752 223333 11110012334455666 555554 45679999998755
No 147
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=77.67 E-value=33 Score=29.40 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=55.8
Q ss_pred CcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccCCC
Q 017748 207 GALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEYGV 285 (366)
Q Consensus 207 G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~ 285 (366)
|.+||..... ..|..+|+++++...+.+|... ..++. -+|++++.. .. . |+.++...
T Consensus 61 ~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~~v------~~i~~~~dg~l~v~~--~~-----g--l~~~d~~~- 118 (326)
T 2ghs_A 61 GTAWWFNILE------RELHELHLASGRKTVHALPFMG------SALAKISDSKQLIAS--DD-----G--LFLRDTAT- 118 (326)
T ss_dssp TEEEEEEGGG------TEEEEEETTTTEEEEEECSSCE------EEEEEEETTEEEEEE--TT-----E--EEEEETTT-
T ss_pred CEEEEEECCC------CEEEEEECCCCcEEEEECCCcc------eEEEEeCCCeEEEEE--CC-----C--EEEEECCC-
Confidence 7889987654 3799999998887766665432 22232 468877754 21 3 44444321
Q ss_pred CCceEEEEEeccC-CCceeeEEEEecCCcEEEEEeeC-------CeEEEEeCCCCeEEEe
Q 017748 286 NDSWTKLATLLNV-GGGNVKPLVYSRSEDKVLLHAVR-------GDLCWYDLERHRVRSI 337 (366)
Q Consensus 286 ~~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~~~~~~-------~~~~~yd~~t~~~~~v 337 (366)
++...+...... ......-+.+..+| .+++...+ ..++.|| +++.+.+
T Consensus 119 -g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 119 -GVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp -CCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred -CcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 234333222111 11112234445556 56665431 3588888 5666544
No 148
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=77.62 E-value=32 Score=29.28 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=93.4
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC----
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN---- 184 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~---- 184 (366)
+++....+..+. +||..+++....-.. ......+.+.+. +.+-++... ........+.+|+..++
T Consensus 88 ~l~s~~~dg~i~-iwd~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~~~~~--~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 88 YCVTGSADYSIK-LWDVSNGQCVATWKS-------PVPVKRVEFSPC-GNYFLAILD--NVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEEEETTTEEE-EEETTTCCEEEEEEC-------SSCEEEEEECTT-SSEEEEEEC--CBTTBCCEEEEEEEEECTTTC
T ss_pred EEEEEeCCCeEE-EEECCCCcEEEEeec-------CCCeEEEEEccC-CCEEEEecC--CccCCCCEEEEEEecCCccce
Confidence 343333456677 889888775543221 123445666654 233332221 11111256777777543
Q ss_pred cEEEccCCCccee-c-----CCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCC-cee-eeeCCCCccCCCCceEEEE
Q 017748 185 SWRRIQDFPYFWV-T-----GTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKS-EEF-YQVPLPPIVGIEGYYILLE 254 (366)
Q Consensus 185 ~W~~~~~~~~~~~-~-----~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~-~~~-~~i~lP~~~~~~~~~~~l~ 254 (366)
.+......+.... . ....+. -+|.....+..+ ..|..+|+.+ .+. ..+..... ....+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~ 225 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDLHEK-----SISDMQ 225 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEECCSS-----CEEEEE
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEecCCC-----ceeEEE
Confidence 2222221111110 0 111111 235444444433 3799999987 332 33333222 122333
Q ss_pred EE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC-----------
Q 017748 255 AL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG----------- 322 (366)
Q Consensus 255 ~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~----------- 322 (366)
.. +|++.++...+. .+.+|-++.. ..+..+..... ..-+.+..++..++....++
T Consensus 226 ~~~~~~~l~~~~~d~-----~i~v~d~~~~------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 226 FSPDLTYFITSSRDT-----NSFLVDVSTL------QVLKKYETDCP--LNTAVITPLKEFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp ECTTSSEEEEEETTS-----EEEEEETTTC------CEEEEEECSSC--EEEEEECSSSSEEEEEECCC-----------
T ss_pred ECCCCCEEEEecCCc-----eEEEEECCCC------ceeeeecCCCC--ceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence 33 466655555444 8999988752 12223332221 44455566665555555444
Q ss_pred ---eEEEEeCCCCeEEEe
Q 017748 323 ---DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ---~~~~yd~~t~~~~~v 337 (366)
.+..||..+++....
T Consensus 293 ~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 293 GKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp --CEEEEEETTTCCEEEE
T ss_pred CcceeEEEecCCCcchhh
Confidence 588899888875544
No 149
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=77.30 E-value=58 Score=32.01 Aligned_cols=195 Identities=11% Similarity=0.109 Sum_probs=97.7
Q ss_pred ecee-EEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGL-LALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gl-l~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|- +.+......++ ++||.|++...++....... .....++..|+.. . +.+.. ...+.+|+..++
T Consensus 415 ~~g~~lWigt~~~Gl~-~~d~~~~~~~~~~~~~~~l~--~~~v~~i~~d~~g-~---lwigt------~~Gl~~~~~~~~ 481 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLS-ILHRNSGQVENFNQRNSQLV--NENVYAILPDGEG-N---LWLGT------LSALVRFNPEQR 481 (795)
T ss_dssp TTTTEEEEEETTTEEE-EEETTTCCEEEECTTTSCCS--CSCEEEEEECSSS-C---EEEEE------SSCEEEEETTTT
T ss_pred CCCCEEEEEeCcCcee-EEeCCCCcEEEeecCCCCcC--CCeeEEEEECCCC-C---EEEEe------cCceeEEeCCCC
Confidence 3454 54444445577 88998888877654211111 1123344444421 1 22222 235778999999
Q ss_pred cEEEccCC--Cccee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeC-C-C-CccCCCCceEEEEE-
Q 017748 185 SWRRIQDF--PYFWV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVP-L-P-PIVGIEGYYILLEA- 255 (366)
Q Consensus 185 ~W~~~~~~--~~~~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-l-P-~~~~~~~~~~~l~~- 255 (366)
.|+..... +.... ..-.+++. +|.+ |++... .+..||..++++ .+. . . ... .......+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~-------Gl~~~~~~~~~~-~~~~~~~~~~l-~~~~i~~i~~d 551 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRL-WIGGEE-------GLSVFKQEGLDI-QKASILPVSNV-TKLFTNCIYEA 551 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECTTCCE-EEEESS-------CEEEEEEETTEE-EECCCSCSCGG-GGSCEEEEEEC
T ss_pred eEEEccccccccccCCceEEEEEECCCCCE-EEEeCC-------ceEEEeCCCCeE-EEecCCCCCCC-CCCeeEEEEEC
Confidence 99876432 11111 11112333 3554 555443 489999998888 432 1 1 111 1112334444
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC-CcEEEEEeeCCeEEEEeCCCCeE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS-EDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
.+|.|++.+.. . +..++.. ..++... .... .+....+.++..+ .+.|.+... ..+..||++++++
T Consensus 552 ~~g~lWigT~~-------G--l~~~d~~--~~~~~~~-~~~~-gl~~~~i~~i~~d~~g~lWi~t~-~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 552 SNGIIWVGTRE-------G--FYCFNEK--DKQIKRY-NTTN-GLPNNVVYGILEDSFGRLWLSTN-RGISCFNPETEKF 617 (795)
T ss_dssp TTSCEEEEESS-------C--EEEEETT--TTEEEEE-CGGG-TCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEE
T ss_pred CCCCEEEEeCC-------C--ceeECCC--CCcEEEe-CCCC-CCchhheEEEEECCCCCEEEEcC-CceEEEcCCCCcE
Confidence 35788876541 2 3334431 1333322 1111 1111223344332 237877775 4599999999999
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
+.+
T Consensus 618 ~~~ 620 (795)
T 4a2l_A 618 RNF 620 (795)
T ss_dssp EEE
T ss_pred EEc
Confidence 876
No 150
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=77.22 E-value=16 Score=34.91 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=63.4
Q ss_pred CcceEECCcEEEEEe-eCCCCCCCcEEEEEEC-CCc--eeeee-CCCCccC----CCCceEEEEE--ECCe----EEEEE
Q 017748 200 TCSVFVNGALHWTAA-LNQDADRNDIIIAFDL-KSE--EFYQV-PLPPIVG----IEGYYILLEA--LGGC----LCLLC 264 (366)
Q Consensus 200 ~~~v~~~G~lYw~~~-~~~~~~~~~~i~~fD~-~~~--~~~~i-~lP~~~~----~~~~~~~l~~--~~g~----L~l~~ 264 (366)
..++..+|.+|.... .. .++++|. ++. .|+.- ..+.... .+.....++. .+|+ |++..
T Consensus 56 ~tP~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t 128 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-------NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ 128 (599)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC
T ss_pred eccEEECCEEEEEeCCCC-------EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc
Confidence 457889999998875 33 6999999 654 55442 2221100 0000112333 4555 65543
Q ss_pred eecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEecCCcEEEEEee------CCeEEEEeCCCCeEEEe
Q 017748 265 KFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSRSEDKVLLHAV------RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 265 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~g~~i~~~~~------~~~~~~yd~~t~~~~~v 337 (366)
. .-.|..|+....+..|.....-...... ...|... ++ .|++... ++.+++||.+|++..+-
T Consensus 129 ~--------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 129 L--------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp T--------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred C--------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 2 1124445533234456643110000000 1334432 34 7776553 56799999999997766
Q ss_pred eeec
Q 017748 338 VEID 341 (366)
Q Consensus 338 ~~~~ 341 (366)
++..
T Consensus 198 ~~~~ 201 (599)
T 1w6s_A 198 AYAT 201 (599)
T ss_dssp EESS
T ss_pred EcCC
Confidence 4443
No 151
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=77.11 E-value=36 Score=29.52 Aligned_cols=180 Identities=7% Similarity=-0.104 Sum_probs=83.4
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 193 (366)
.+..+. |||..+++....-.. + ......+.+.+.... .++.... ...+.+++.+++.-.. +....
T Consensus 147 ~d~~i~-iwd~~~~~~~~~~~~---h---~~~V~~~~~~~~~~~-~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 147 KDICIK-VWDLAQQVVLSSYRA---H---AAQVTCVAASPHKDS-VFLSCSE------DNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp TTSCEE-EEETTTTEEEEEECC---C---SSCEEEEEECSSCTT-EEEEEET------TSCEEEEETTSSSCEEECC---
T ss_pred CCCeEE-EEECCCCcEEEEEcC---c---CCceEEEEecCCCCC-ceeeecc------ccccccccccccceeeeeecce
Confidence 455677 888888775432111 1 112334555544322 2222221 3457888887764322 21110
Q ss_pred cceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CC-eEEEEEeec
Q 017748 194 YFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFD 267 (366)
Q Consensus 194 ~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~ 267 (366)
.. ....++.. ++.+...+..+ ..|..+|+++.+.. .+..... ....+... +| ++.+.+..+
T Consensus 213 ~~--~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~~~~~~~h~~-----~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 213 PG--YLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSCVLSSAVHSQ-----CVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp -C--CCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--CCEEEECCSS-----CEEEEEECSSSSCCEEEEETT
T ss_pred ee--ccceeeeecCCCCcceEEeccC------CcEEEEECCCCcEEEEEcCCCC-----CEEEEEEccCCCeEEEEEeCC
Confidence 00 00112222 23343333332 37888999876532 2222211 22233333 34 444444444
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCCeE
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERHRV 334 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~~~ 334 (366)
. .+.||-+.. . ......... +...-+++.++|..++. ...|+.+..|++.++..
T Consensus 280 ~-----~i~vwd~~~----~--~~~~~~~H~--~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 280 C-----SLAVLDSSL----S--ELFRSQAHR--DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp S-----CEEEECTTC----C--EEEEECCCS--SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred C-----eEEEEECCC----C--cEEEEcCCC--CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 4 899996543 1 112111221 12455666777755665 45677899999988654
No 152
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=77.10 E-value=51 Score=31.30 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=97.2
Q ss_pred ccEEEEEeccc------cceeecC-CcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCC---CccEEEEEEec-CC-
Q 017748 117 RNIMLLLNPLT------KRHRVLP-TFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPM---NYTEVAVFSLR-VN- 184 (366)
Q Consensus 117 ~~~~~V~NP~t------~~~~~LP-~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~---~~~~~~vyss~-t~- 184 (366)
..++ ++|..+ ++...|. .-.. ......+.|. +++-++. .. .... ....+.+++.. ++
T Consensus 161 ~~i~-~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~SpD-G~~la~~-~~-~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 161 RFLA-AVPLDGSAAADRSAVRELSDDAHR-------FVTGPRLSPD-GRQAVWL-AW-DHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp EEEE-EEETTSTTTTCGGGSEESSCSCSS-------EECCCEECTT-SSEEEEE-EE-CTTCCTTTCEEEEEEEECTTSC
T ss_pred eEEE-EEECCCCccccCCceeEEEecCCC-------cccCceECCC-CCEEEEE-EC-CCCCCCCCCcEEEEEEECCCCc
Confidence 4688 999998 7777665 3211 1112233342 2332222 21 1111 23578888988 57
Q ss_pred --cEEEccCCCcceecCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCc---eEEEEEE-
Q 017748 185 --SWRRIQDFPYFWVTGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGY---YILLEAL- 256 (366)
Q Consensus 185 --~W~~~~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~---~~~l~~~- 256 (366)
..+.+..-.. .......+ -+|.+|+.+.... ...|..+|+++.++..+ ..........+ ...+...
T Consensus 230 ~~~~~~l~~~~~--~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 230 FADTRTLLGGPE--EAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA 303 (662)
T ss_dssp EEEEEEEEEETT--BCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred ccccEEeCCCCC--ceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeC
Confidence 3443321100 00011222 2788887765431 13799999987777655 32221100000 1123333
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CC---eEEEEeCCCC
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RG---DLCWYDLERH 332 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~---~~~~yd~~t~ 332 (366)
+|++++.... . ...||.++..+ +. ...+.... +....+. ..+++.+++... .. .++.+|++++
T Consensus 304 ~~~~~~~~~~-~-----~~~l~~~d~~~--~~---~~~l~~~~-~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 304 NGLIAVVHGK-G-----AAVLGILDPES--GE---LVDAAGPW-TEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp TSCEEEEEBS-S-----SCEEEEEETTT--TE---EEECCSSC-CEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCEEEEEEEc-C-----ccEEEEEECCC--Cc---EEEecCCC-CeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 6777766654 4 78999988532 22 23333221 1122221 344556666543 32 4899999999
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+.+.+
T Consensus 371 ~~~~l 375 (662)
T 3azo_A 371 RARTI 375 (662)
T ss_dssp CEEEE
T ss_pred ceEEe
Confidence 98877
No 153
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=77.00 E-value=51 Score=31.17 Aligned_cols=200 Identities=13% Similarity=0.003 Sum_probs=106.1
Q ss_pred ceeEEeec-CCccEEEEEecccccee-ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHR-VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
++++.+.. ....+. |+|+.|++.. .+|... ...++.++|. +.|-.+. . . ...+.+|+..+.
T Consensus 166 ~~~~~V~~~~~~~V~-viD~~t~~v~~~i~~g~--------~p~~v~~SpD-Gr~lyv~-~--~----dg~V~viD~~~~ 228 (567)
T 1qks_A 166 ENLFSVTLRDAGQIA-LIDGSTYEIKTVLDTGY--------AVHISRLSAS-GRYLFVI-G--R----DGKVNMIDLWMK 228 (567)
T ss_dssp GGEEEEEETTTTEEE-EEETTTCCEEEEEECSS--------CEEEEEECTT-SCEEEEE-E--T----TSEEEEEETTSS
T ss_pred CceEEEEeCCCCeEE-EEECCCCeEEEEEeCCC--------CccceEECCC-CCEEEEE-c--C----CCeEEEEECCCC
Confidence 34554444 456788 9999998765 454321 2235566664 3444433 1 1 346888988522
Q ss_pred cEEEccCCCcceecCCcceEE------CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCC------CCceE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV------NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGI------EGYYI 251 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~------~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~------~~~~~ 251 (366)
+-+.+..++.... ..++.+ +|+.-+++.... ..+..+|..+.+- ..+++.....+ .....
T Consensus 229 t~~~v~~i~~G~~--P~~ia~s~~~~pDGk~l~v~n~~~-----~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 229 EPTTVAEIKIGSE--ARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SCCEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCcEeEEEecCCC--CceeEEccccCCCCCEEEEEEccC-----CeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 2222222221111 112322 576555554432 3789999887554 33444321000 00112
Q ss_pred EEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeC
Q 017748 252 LLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDL 329 (366)
Q Consensus 252 ~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~ 329 (366)
.+... ++..+++...+ .=.||.++-.. ....++..++.... .+..++..+|..+++.. ..+++.++|.
T Consensus 302 ~i~~s~~~~~~vv~~~~------~g~v~~vd~~~--~~~~~v~~i~~~~~--~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 302 AILASHYRPEFIVNVKE------TGKILLVDYTD--LNNLKTTEISAERF--LHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp EEEECSSSSEEEEEETT------TTEEEEEETTC--SSEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred EEEEcCCCCEEEEEecC------CCeEEEEecCC--Cccceeeeeecccc--ccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 23333 24445544422 23466665432 23556666766554 77778888886666654 3567999999
Q ss_pred CCCeEEEeeee
Q 017748 330 ERHRVRSIVEI 340 (366)
Q Consensus 330 ~t~~~~~v~~~ 340 (366)
++++......+
T Consensus 372 ~t~kl~~~i~v 382 (567)
T 1qks_A 372 KEGKLVAIEDT 382 (567)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCcEEEEEec
Confidence 99998755466
No 154
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.69 E-value=62 Score=32.05 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=61.8
Q ss_pred ceEEC---CcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEE
Q 017748 202 SVFVN---GALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWD 276 (366)
Q Consensus 202 ~v~~~---G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~ 276 (366)
++.++ |.|||..... ..|.++|+.......+.. ... ..-..|++ .+|.||+..... .-.
T Consensus 475 GLAvD~~~~~LY~tD~~~------~~I~v~~ldG~~~~~l~~-~~l---~~P~gIaVDp~~g~LYwtD~g~------~~~ 538 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENG---SKPRAIVVDPVHGFMYWTDWGT------PAK 538 (791)
T ss_dssp EEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEE-CTT---CCEEEEEEETTTTEEEEEECSS------SCE
T ss_pred eeeeeecCCcEEEEecCC------CeEEEEeCCCCeEEEEEe-CCC---CCcceEEEecCCCCEEEecCCC------CCe
Confidence 55554 6999987554 489999998654433311 111 01223444 358888876432 124
Q ss_pred EEEeccCCCCCceEEEEEeccCCCceeeEEEEe--cCCcEEEEEeeC-CeEEEEeCCCCeEEEe
Q 017748 277 LWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYS--RSEDKVLLHAVR-GDLCWYDLERHRVRSI 337 (366)
Q Consensus 277 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~~i~~~~~~-~~~~~yd~~t~~~~~v 337 (366)
|++.+-.+.. +..+....+ ..|.++. ..++.||+.... .++..+|++....+.+
T Consensus 539 I~~~~~dG~~-----~~~lv~~~l--~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 539 IKKGGLNGVD-----IYSLVTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEETTSCC-----EEEEECSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEecCCCc-----eEEEEeCCC--CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 5555543321 122222223 5565554 335578887543 3588888877666555
No 155
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=76.68 E-value=34 Score=29.03 Aligned_cols=209 Identities=11% Similarity=0.043 Sum_probs=100.1
Q ss_pred eceeEEe-ecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLAL-EDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~-~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|-+.+ ......++ ++|+.+++...+.... .....++.+++.. . ++.... ........+.+|+..++
T Consensus 54 ~~g~l~~~~~~~~~i~-~~d~~~~~~~~~~~~~------~~~~~~i~~~~dg-~--l~v~~~-~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIF-KINPETKEIKRPFVSH------KANPAAIKIHKDG-R--LFVCYL-GDFKSTGGIFAATENGD 122 (333)
T ss_dssp TTSCEEEEETTTCEEE-EECTTTCCEEEEEECS------SSSEEEEEECTTS-C--EEEEEC-TTSSSCCEEEEECTTSC
T ss_pred CCCCEEEEECCCCEEE-EEeCCCCcEEEEeeCC------CCCcceEEECCCC-c--EEEEeC-CCCCCCceEEEEeCCCC
Confidence 3455543 33456788 9999998877653211 1134466677653 2 222211 11011246777887776
Q ss_pred cEEE-ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-
Q 017748 185 SWRR-IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC- 259 (366)
Q Consensus 185 ~W~~-~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~- 259 (366)
.-+. +...... .....+.+ +|.+|+.............|..+|.+++++..+.- .. .....++.. +|+
T Consensus 123 ~~~~~~~~~~~~--~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~---~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIEDLSTA--YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NI---SVANGIALSTDEKV 195 (333)
T ss_dssp SCEEEECSSSSC--CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EE---SSEEEEEECTTSSE
T ss_pred EEEEEEccCccC--CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CC---CcccceEECCCCCE
Confidence 5542 2211110 11112333 57766644321111112479999998766654421 11 011123332 454
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEE-Ee--ccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLA-TL--LNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVR 335 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i--~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~ 335 (366)
|++...... .+.+|.++..+ ....... .+ .........-+++..+| .+++... ++.+..||++.+..+
T Consensus 196 l~v~~~~~~-----~i~~~d~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~ 267 (333)
T 2dg1_A 196 LWVTETTAN-----RLHRIALEDDG--VTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIG 267 (333)
T ss_dssp EEEEEGGGT-----EEEEEEECTTS--SSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEE
T ss_pred EEEEeCCCC-----eEEEEEecCCC--cCcccccceEEEecCCCCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEE
Confidence 666554333 67777665322 1122111 11 11111112334555566 6777654 457999999777666
Q ss_pred Eeeeec
Q 017748 336 SIVEID 341 (366)
Q Consensus 336 ~v~~~~ 341 (366)
.+ ...
T Consensus 268 ~~-~~~ 272 (333)
T 2dg1_A 268 QI-LIP 272 (333)
T ss_dssp EE-ECT
T ss_pred EE-EcC
Confidence 66 544
No 156
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=76.64 E-value=35 Score=29.19 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=93.2
Q ss_pred eeceeEEeec-CCccEEEEEeccc----ccee-ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEE
Q 017748 105 SCNGLLALED-SRRNIMLLLNPLT----KRHR-VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAV 178 (366)
Q Consensus 105 s~~Gll~~~~-~~~~~~~V~NP~t----~~~~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~v 178 (366)
..+|.+...+ ...+++ ..++.+ .... .++.. .....++.+|+..+. +.... . ....+++
T Consensus 39 ~~~~~ly~~D~~~~~I~-~~~~~g~~~~~~~~~~~~~~-------~~~p~glavd~~~~~--ly~~d---~--~~~~I~~ 103 (316)
T 1ijq_A 39 VASNRIYWSDLSQRMIC-STQLDRAHGVSSYDTVISRD-------IQAPDGLAVDWIHSN--IYWTD---S--VLGTVSV 103 (316)
T ss_dssp TTTTEEEEEETTTTEEE-EEEC--------CEEEECSS-------CSCCCEEEEETTTTE--EEEEE---T--TTTEEEE
T ss_pred eCCCEEEEEECCCCcEE-EEECCCCCCCcccEEEEeCC-------CCCcCEEEEeecCCe--EEEEE---C--CCCEEEE
Confidence 3456665554 446677 888876 2222 22211 112336777765442 22211 1 1345677
Q ss_pred EEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE
Q 017748 179 FSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA 255 (366)
Q Consensus 179 yss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~ 255 (366)
++.....-+.+..... ....++.+ +|.+||...... ..|..+|+....-..+.- ... ...--|+.
T Consensus 104 ~~~~g~~~~~~~~~~~---~~P~~iavdp~~g~ly~~d~~~~-----~~I~~~~~dG~~~~~~~~-~~~---~~P~gla~ 171 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVT-ENI---QWPNGITL 171 (316)
T ss_dssp EETTSSSEEEEEECTT---CCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCCEEEEEC-SSC---SCEEEEEE
T ss_pred EeCCCCceEEEEECCC---CCcceEEeCCCCCEEEEEccCCC-----CeEEEEcCCCCCeEEEEE-CCC---CCceEEEE
Confidence 7775443332211000 11224444 689999864321 379999987543333211 111 11223444
Q ss_pred E--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCC
Q 017748 256 L--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERH 332 (366)
Q Consensus 256 ~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~ 332 (366)
- +++||++..... .+ +.++-.+... ..+.... ..+ ..|.++.-+++.||+... ..++..+|+.++
T Consensus 172 d~~~~~lY~~D~~~~-----~I--~~~d~dg~~~--~~~~~~~-~~~--~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 172 DLLSGRLYWVDSKLH-----SI--SSIDVNGGNR--KTILEDE-KRL--AHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp ETTTTEEEEEETTTT-----EE--EEEETTSCSC--EEEEECT-TTT--SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eccCCEEEEEECCCC-----eE--EEEecCCCce--EEEeecC-Ccc--CCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 3 688998876433 44 4444322111 1111111 122 557666655668888764 346999999877
Q ss_pred eEE
Q 017748 333 RVR 335 (366)
Q Consensus 333 ~~~ 335 (366)
+..
T Consensus 240 ~~~ 242 (316)
T 1ijq_A 240 SDV 242 (316)
T ss_dssp CCC
T ss_pred cce
Confidence 643
No 157
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=76.63 E-value=36 Score=29.30 Aligned_cols=155 Identities=9% Similarity=-0.047 Sum_probs=79.0
Q ss_pred ccEEEEEEecCCcEEEcc--CCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCC
Q 017748 173 YTEVAVFSLRVNSWRRIQ--DFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIE 247 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~--~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~ 247 (366)
...+++++.....-+.+. .+. ...++.+ +|.+||...... ..|..+|+....-..+. ....
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~~-----~P~giavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~~-~~~l--- 165 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQELD-----QPRAIALDPSSGFMYWTDWGEV-----PKIERAGMDGSSRFIII-NSEI--- 165 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSCS-----SEEEEEEEGGGTEEEEEECSSS-----CEEEEEETTSCSCEEEE-CSSC---
T ss_pred CCEEEEEECCCCcEEEEEeCCCC-----CccEEEEeCCCCEEEEEecCCC-----CEEEEEEcCCCCeEEEE-ECCC---
Confidence 346777777543333321 111 1224444 489999764321 37999998753322221 1111
Q ss_pred CceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeE
Q 017748 248 GYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDL 324 (366)
Q Consensus 248 ~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~ 324 (366)
...--|+.. +++||++..... .|+..+-.+.. +..+-...+ ..|.++.-+++.+|+... ..++
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~-------~I~~~d~dG~~-----~~~~~~~~~--~~P~glav~~~~lywtd~~~~~V 231 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLN-------FIHKSNLDGTN-----RQAVVKGSL--PHPFALTLFEDILYWTDWSTHSI 231 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTT-------EEEEEETTSCS-----CEEEECSCC--SCEEEEEEETTEEEEEETTTTEE
T ss_pred CCccEEEEeccCCEEEEEECCCC-------EEEEEcCCCCc-----eEEEecCCC--CCceEEEEeCCEEEEEecCCCeE
Confidence 012234443 688999876432 35555433221 112212223 667777656668888754 3469
Q ss_pred EEEeCCCCeEEEeeeecCcccCeeeeeEEecCc
Q 017748 325 CWYDLERHRVRSIVEIDDKVRRCDMRTVCVNTL 357 (366)
Q Consensus 325 ~~yd~~t~~~~~v~~~~~~~~~~~~~~~y~~sl 357 (366)
..+|+.+++........ ....+....|.++.
T Consensus 232 ~~~~~~~G~~~~~i~~~--~~~P~~i~v~~~~~ 262 (318)
T 3sov_A 232 LACNKYTGEGLREIHSD--IFSPMDIHAFSQQR 262 (318)
T ss_dssp EEEETTTCCSCEEEECC--CSSCCCEEEECGGG
T ss_pred EEEECCCCCceEEEeCC--CCCCcEEEEecccc
Confidence 99999777643331322 22234445555543
No 158
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=76.15 E-value=36 Score=29.01 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=56.1
Q ss_pred cEEEEEECCCceeee-eCCCCccCCCCceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc--
Q 017748 223 DIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN-- 297 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-- 297 (366)
..|..+|+.+.+... +..... ....+... ++.+.+.+..+. .+.+|-++.. ..+..+..
T Consensus 95 g~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~------~~~~~~~~~~ 158 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTD------TLVAIFGGVE 158 (366)
T ss_dssp CEEEEECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTS-----CEEEEETTTT------EEEEEECSTT
T ss_pred CEEEEEEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecC------eEEEEecccc
Confidence 379999998765432 221111 22233333 566666666555 8999988752 22333311
Q ss_pred CCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 298 VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 298 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
..-....-+.+..+++.++....++.+..||+++++.
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence 1111244556667776676677777899999998754
No 159
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=76.00 E-value=11 Score=33.34 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=56.4
Q ss_pred EEEEEEecC--CcEEEccCCCcceecCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCce
Q 017748 175 EVAVFSLRV--NSWRRIQDFPYFWVTGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYY 250 (366)
Q Consensus 175 ~~~vyss~t--~~W~~~~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 250 (366)
.+..++..+ ..|+--...+.. ....++. .+|.+|.-...+ .+.++|.++++.... ..+...
T Consensus 60 ~l~a~d~~tG~~~w~~~~~~~~~--~~~sp~~~~~~~v~~g~~dg-------~v~a~D~~tG~~~w~~~~~~~~------ 124 (369)
T 2hz6_A 60 SLYTLGSKNNEGLTKLPFTIPEL--VQASPCRSSDGILYMGKKQD-------IWYVIDLLTGEKQQTLSSAFAD------ 124 (369)
T ss_dssp CEEEC-----CCSEECSCCHHHH--HTTCSCC-----CCCCEEEE-------EEEEECCC--------------------
T ss_pred EEEEEECCCCceeeeeeccCccc--cccCceEecCCEEEEEeCCC-------EEEEEECCCCcEEEEecCCCcc------
Confidence 456666644 467642211111 1122333 677777544433 799999987654222 222211
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC---CcEEEEEeeCCeEEEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS---EDKVLLHAVRGDLCWY 327 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~y 327 (366)
.....++.|++... +. .+..|-.+. .+..|.....-. . ...+..+ ++.+++...++.++++
T Consensus 125 -~~~p~~~~v~~~~~-dg-----~v~a~d~~t--G~~~W~~~~~~~------~-~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 125 -SLSPSTSLLYLGRT-EY-----TITMYDTKT--RELRWNATYFDY------A-ASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp ---------EEEEEE-EE-----EEECCCSSS--SSCCCEEEEEEE------C-CBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred -cccccCCEEEEEec-CC-----EEEEEECCC--CCEEEeEecccc------c-CccccCCccccceEEEECCCCEEEEE
Confidence 01113455555433 22 444444333 335587642110 0 1111111 1377877777889999
Q ss_pred eCCCCeEEEeeeec
Q 017748 328 DLERHRVRSIVEID 341 (366)
Q Consensus 328 d~~t~~~~~v~~~~ 341 (366)
|.++++..+-.++.
T Consensus 189 d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 189 DSESGDVLWIQNYA 202 (369)
T ss_dssp CTTTCCEEEEEECS
T ss_pred ECCCCcEEEEecCC
Confidence 99999877654443
No 160
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=75.97 E-value=0.45 Score=42.61 Aligned_cols=27 Identities=7% Similarity=-0.007 Sum_probs=16.4
Q ss_pred cceEECCcEEEEEeeCCCCCCCcEEEEEECCCce
Q 017748 201 CSVFVNGALHWTAALNQDADRNDIIIAFDLKSEE 234 (366)
Q Consensus 201 ~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~ 234 (366)
.++..+|.+|.-+..+ .|.++|.++.+
T Consensus 4 sP~v~~~~v~~gs~dg-------~v~a~d~~tG~ 30 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG-------SLHAVSKRTGS 30 (369)
T ss_dssp ----CTTEEEEEETTS-------EEEEEETTTCC
T ss_pred CCeeeCCEEEEEcCCC-------EEEEEECCCCC
Confidence 3556677777665443 79999987653
No 161
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=75.84 E-value=35 Score=28.71 Aligned_cols=142 Identities=10% Similarity=-0.029 Sum_probs=78.6
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceE-ECCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVF-VNGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.=...-.++.. .+..++. .++.+|..+... ..+.++|.++.+- ..++.+ .. ..
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~--~fgeGi~~~g~~lyv~t~~~------~~v~viD~~t~~v~~~i~~g-~~----~g 109 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDS--YFGEGLTLLNEKLYQVVWLK------NIGFIYDRRTLSNIKNFTHQ-MK----DG 109 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTEEEEEETTC------SEEEEEETTTTEEEEEEECC-SS----SC
T ss_pred CCEEEEEECCCCCEEEEEecCCC--cceEEEEEeCCEEEEEEecC------CEEEEEECCCCcEEEEEECC-CC----Ce
Confidence 56788999988763221112211 1122343 455788777544 4899999997544 555655 12 12
Q ss_pred EEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceeeEE--EEecCCcEEEEEee-CCeEE
Q 017748 251 ILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVKPL--VYSRSEDKVLLHAV-RGDLC 325 (366)
Q Consensus 251 ~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~--~~~~~g~~i~~~~~-~~~~~ 325 (366)
..|..-+++|++... . . .|++++.. .-..+.+|+.... ....+. .+. +| .++.... .+.+.
T Consensus 110 ~glt~Dg~~l~vs~g--s-----~-~l~viD~~----t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 110 WGLATDGKILYGSDG--T-----S-ILYEIDPH----TFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIA 175 (266)
T ss_dssp CEEEECSSSEEEECS--S-----S-EEEEECTT----TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred EEEEECCCEEEEECC--C-----C-eEEEEECC----CCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEE
Confidence 234544667886542 1 2 46677752 2334455553211 001222 233 45 8887654 45799
Q ss_pred EEeCCCCeEEEeeeec
Q 017748 326 WYDLERHRVRSIVEID 341 (366)
Q Consensus 326 ~yd~~t~~~~~v~~~~ 341 (366)
..|++|++......+.
T Consensus 176 vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 176 RISAKDGTLLGWILLP 191 (266)
T ss_dssp EEETTTCCEEEEEECH
T ss_pred EEECCCCcEEEEEECC
Confidence 9999999875443664
No 162
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=75.63 E-value=31 Score=28.09 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=92.3
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|-+.+.+....++ ++|+.++....++... .....++.+|+.. . +..... . ...+.+|+.++...
T Consensus 77 ~g~l~v~~~~~~i~-~~d~~~~~~~~~~~~~------~~~p~~i~~~~~g-~--l~v~~~-~----~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 77 AGTVYVTDFNNRVV-TLAAGSNNQTVLPFDG------LNYPEGLAVDTQG-A--VYVADR-G----NNRVVKLAAGSKTQ 141 (270)
T ss_dssp TCCEEEEETTTEEE-EECTTCSCCEECCCCS------CSSEEEEEECTTC-C--EEEEEG-G----GTEEEEECTTCCSC
T ss_pred CCCEEEEcCCCEEE-EEeCCCceEeeeecCC------cCCCcceEECCCC-C--EEEEEC-C----CCEEEEEECCCcee
Confidence 55554444455688 9999887766554322 1234567777643 2 222211 1 33566676555444
Q ss_pred EEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEE
Q 017748 187 RRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
....... .....++.+ +|.+|+..... ..|..||..+........... .....++.. +|.|++.
T Consensus 142 ~~~~~~~---~~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~d~~g~l~v~ 208 (270)
T 1rwi_B 142 TVLPFTG---LNDPDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTDI----TAPWGIAVDEAGTVYVT 208 (270)
T ss_dssp EECCCCS---CCSCCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSSC----CSEEEEEECTTCCEEEE
T ss_pred Eeecccc---CCCceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccCC----CCceEEEECCCCCEEEE
Confidence 3321110 011224444 48876655433 379999998766544322111 122234443 4688887
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCCCe
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLERHR 333 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t~~ 333 (366)
..... .+.+|..+. . ... .+....+....-+++..+| .|++.. .++++..|++...+
T Consensus 209 ~~~~~-----~v~~~~~~~--~-~~~----~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 209 EHNTN-----QVVKLLAGS--T-TST----VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ETTTS-----CEEEECTTC--S-CCE----ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCC-----cEEEEcCCC--C-cce----eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence 65443 565554432 1 111 1222222112234444556 566664 34568888876543
No 163
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=75.61 E-value=36 Score=28.74 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=92.7
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccE-EEEEEecCC-cEEEcc--CCC
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTE-VAVFSLRVN-SWRRIQ--DFP 193 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~-~~vyss~t~-~W~~~~--~~~ 193 (366)
.+. ++|+.+++....-+.. .....+.++|... +-++.-. . ... +.+|+...+ .-.... ..+
T Consensus 109 ~i~-v~d~~~~~~~~~~~~~-------~~~~~~~~spdg~-~l~~~~~--~----~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 109 NMQ-SYSFLKNKFISTIPIP-------YDAVGIAISPNGN-GLILIDR--S----SANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp EEE-EEETTTTEEEEEEECC-------TTEEEEEECTTSS-CEEEEEE--T----TTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred cEE-EEECCCCCeEEEEECC-------CCccceEECCCCC-EEEEEec--C----CCceEEEEEECCCCcEeecCCcccc
Confidence 688 9999988765432111 1234667777543 3222211 1 223 677776532 111110 000
Q ss_pred cceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCcee----eeeCCCCccCCCCceEEEEEE-CCe-EEEEEe
Q 017748 194 YFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEF----YQVPLPPIVGIEGYYILLEAL-GGC-LCLLCK 265 (366)
Q Consensus 194 ~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~----~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~ 265 (366)
.. ....++. -+|...|++.... ..|..+|+++.+. ..++.+... ..+... +|+ |++...
T Consensus 174 ~~--~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~~~~------~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 174 GG--TRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVGTNNLP------GTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp SS--SSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEECSSCC------CCEEECTTSSEEEEECS
T ss_pred CC--CCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccCCCCC------ceEEECCCCCEEEEEEc
Confidence 00 0011222 2576444444322 3799999987664 223322211 112332 466 554433
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccC--CCc----eeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEee
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV--GGG----NVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSIV 338 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~--~~~----~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v~ 338 (366)
... .+.+|-++. .+...+..+... ... ....+++..+|..+++...+ +.+.+||+.++....+.
T Consensus 241 ~~~-----~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 311 (331)
T 3u4y_A 241 STV-----DVFNFNQLS----GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA 311 (331)
T ss_dssp SEE-----EEEEEETTT----TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred CCC-----EEEEEECCC----CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence 222 566665544 234334444322 110 02336788888777776654 46999999999988774
Q ss_pred eec
Q 017748 339 EID 341 (366)
Q Consensus 339 ~~~ 341 (366)
.++
T Consensus 312 ~~~ 314 (331)
T 3u4y_A 312 GIE 314 (331)
T ss_dssp TCC
T ss_pred ccc
Confidence 443
No 164
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=75.61 E-value=61 Score=31.42 Aligned_cols=36 Identities=6% Similarity=0.065 Sum_probs=26.1
Q ss_pred EEEEecCCcEEEEEeeCC-------------------eEEEEeCCCCeEEEeeee
Q 017748 305 PLVYSRSEDKVLLHAVRG-------------------DLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 305 ~~~~~~~g~~i~~~~~~~-------------------~~~~yd~~t~~~~~v~~~ 340 (366)
..++..+++.|++...+. .++++|++|++..+-++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT 293 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence 455666666888876543 399999999998876554
No 165
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=75.50 E-value=56 Score=31.61 Aligned_cols=37 Identities=5% Similarity=0.128 Sum_probs=26.4
Q ss_pred EEEEecCCcEEEEEeeCC-------------------eEEEEeCCCCeEEEeeeec
Q 017748 305 PLVYSRSEDKVLLHAVRG-------------------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 305 ~~~~~~~g~~i~~~~~~~-------------------~~~~yd~~t~~~~~v~~~~ 341 (366)
...+..+++.|++...+. .++++|++|++..+.+++.
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 445555666888775432 4999999999988876653
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=75.43 E-value=33 Score=28.33 Aligned_cols=189 Identities=11% Similarity=0.086 Sum_probs=93.8
Q ss_pred eceeEEeecC--CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 106 CNGLLALEDS--RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 106 ~~Gll~~~~~--~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
.+|.+.+... ...+. ++|+..+....+.... .....++.+|+.. . ++... . ....+.+|+...
T Consensus 87 ~~g~l~v~~~~~~~~i~-~~d~~g~~~~~~~~~~------~~~~~~i~~~~~g-~--l~v~~---~--~~~~i~~~~~~g 151 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQ-IYNQYGQFVRKFGATI------LQHPRGVTVDNKG-R--IIVVE---C--KVMRVIIFDQNG 151 (286)
T ss_dssp TTTEEEEEECGGGCEEE-EECTTSCEEEEECTTT------CSCEEEEEECTTS-C--EEEEE---T--TTTEEEEECTTS
T ss_pred CCCeEEEEcCCCCCEEE-EECCCCcEEEEecCcc------CCCceEEEEeCCC-C--EEEEE---C--CCCEEEEEcCCC
Confidence 4666655542 56677 8996555444443321 1234567777643 2 22221 1 134577777654
Q ss_pred CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeE
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
..-+.+..... .....++.+ +|.+|...... ..|..||...+....+..+... .....++.. +|.|
T Consensus 152 ~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 152 NVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEI 220 (286)
T ss_dssp CEEEEEECTTT--CSSEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCE
T ss_pred CEEEEeCCCCc--cCCcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCE
Confidence 43333321100 011123444 47766544333 3799999977665555433211 122234443 6888
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
+++...... .+.+|. .. .+-......... .....-+++..+| .+++...+..+.+|+...
T Consensus 221 ~v~~~~~~~----~i~~~~--~~---g~~~~~~~~~~~-~~~~~~i~~~~~g-~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 221 LIADNHNNF----NLTIFT--QD---GQLISALESKVK-HAQCFDVALMDDG-SVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEECSSSC----EEEEEC--TT---SCEEEEEEESSC-CSCEEEEEEETTT-EEEEEETTTEEEEEECSC
T ss_pred EEEeCCCCE----EEEEEC--CC---CCEEEEEcccCC-CCcceeEEECCCC-cEEEECCCCeEEEEEccc
Confidence 887754321 566664 21 112222222211 1112335566677 777776566788887754
No 167
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=74.93 E-value=34 Score=28.21 Aligned_cols=192 Identities=11% Similarity=0.104 Sum_probs=95.8
Q ss_pred eeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC
Q 017748 105 SCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV 183 (366)
Q Consensus 105 s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t 183 (366)
..+|-+.+.. ....++ ++||. ++...++.+.. .....++.+|+. +. +.... . ....+..|+..
T Consensus 70 ~~~g~l~v~~~~~~~v~-~~d~~-g~~~~~~~~~~-----~~~~~~i~~~~~-g~--l~v~~--~---~~~~i~~~~~~- 133 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIG-KLSKK-GGFTEYPLPQP-----DSGPYGITEGLN-GD--IWFTQ--L---NGDRIGKLTAD- 133 (300)
T ss_dssp CTTSCEEEEETTTTEEE-EECTT-SCEEEEECSST-----TCCEEEEEECST-TC--EEEEE--T---TTTEEEEECTT-
T ss_pred CCCCCEEEEecCCCeEE-EECCC-CCeEEecCCCC-----CCCCccceECCC-CC--EEEEc--c---CCCeEEEECCC-
Confidence 3456555444 345678 89988 66654433211 123456666653 22 22211 0 12346666665
Q ss_pred CcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeE
Q 017748 184 NSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCL 260 (366)
Q Consensus 184 ~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L 260 (366)
+...... .+... ....++.+ +|.+|+..... ..|..||. +.++..+.+|... .....+... +|.|
T Consensus 134 g~~~~~~-~~~~~-~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~d~~g~l 201 (300)
T 2qc5_A 134 GTIYEYD-LPNKG-SYPAFITLGSDNALWFTENQN------NSIGRITN-TGKLEEYPLPTNA---AAPVGITSGNDGAL 201 (300)
T ss_dssp SCEEEEE-CSSTT-CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSE
T ss_pred CCEEEcc-CCCCC-CCceeEEECCCCCEEEEecCC------CeEEEECC-CCcEEEeeCCCCC---CCcceEEECCCCCE
Confidence 5544332 11000 11123333 57766554322 37999999 6666666665433 122234443 5788
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE--EecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV--YSRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
++...... .+.+ ++.. ...... .++. .. ..|.+ +..+| .|++... .+.+..||+ +++...+
T Consensus 202 ~v~~~~~~-----~i~~--~~~~---g~~~~~-~~~~-~~--~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 202 WFVEIMGN-----KIGR--ITTT---GEISEY-DIPT-PN--ARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp EEEETTTT-----EEEE--ECTT---CCEEEE-ECSS-TT--CCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCEEEE
T ss_pred EEEccCCC-----EEEE--EcCC---CcEEEE-ECCC-CC--CCceEEEECCCC-CEEEeccCCCeEEEECC-CCcEEEE
Confidence 88765332 3444 4432 223332 2221 12 34444 44455 6777764 367999999 5666655
Q ss_pred eeec
Q 017748 338 VEID 341 (366)
Q Consensus 338 ~~~~ 341 (366)
.+.
T Consensus 266 -~~~ 268 (300)
T 2qc5_A 266 -QLQ 268 (300)
T ss_dssp -ECC
T ss_pred -ECC
Confidence 444
No 168
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.70 E-value=40 Score=28.87 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=51.5
Q ss_pred EEEEEECCCce-eeeeCCCCccCCCCceEEEEEE---CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 224 IIIAFDLKSEE-FYQVPLPPIVGIEGYYILLEAL---GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 224 ~i~~fD~~~~~-~~~i~lP~~~~~~~~~~~l~~~---~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
.+..+|..+.+ ......+... ....+... +|++.+.+..+. .+.+|-++... -..........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~----~~~~~~~~~~~ 171 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSAN----EIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDS----QYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSS----CEEEEECCC---CCEEEEEETTC-----CEEEEESSSSC----EEEEECCCSSC
T ss_pred ceEEeecCCcceeEEeecCCCC----CEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCc----EEEEEecCCCC
Confidence 45666766655 3333333221 11222222 455555555444 89999987631 12211111111
Q ss_pred CceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 300 GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 300 ~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
...-+++.++|..+.....++.+..||+++++..
T Consensus 172 --~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 172 --EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp --CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred --ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 1445667777744444566777999999998754
No 169
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=74.53 E-value=37 Score=28.38 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=90.7
Q ss_pred CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEc-cCCC
Q 017748 115 SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRI-QDFP 193 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~-~~~~ 193 (366)
....+. ++||.+++...+..+..... .....++.+++..+ ++..... ...+.+|+.. +..+.+ ....
T Consensus 44 ~~~~i~-~~d~~~g~~~~~~~~~~~~~--~~~~~~i~~~~~~g--~l~v~~~------~~~l~~~d~~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 44 PAGEIL-RIDLKTGKKTVICKPEVNGY--GGIPAGCQCDRDAN--QLFVADM------RLGLLVVQTD-GTFEEIAKKDS 111 (314)
T ss_dssp ECCEEE-EECTTTCCEEEEECCEETTE--ECCEEEEEECSSSS--EEEEEET------TTEEEEEETT-SCEEECCSBCT
T ss_pred CCCEEE-EEeCCCCcEEEEEecccCCC--CCCCceEEEecCCC--cEEEEEC------CCCEEEEeCC-CCEEEEEeccC
Confidence 345677 88998888766543110000 11344666665422 2222211 2267788887 776655 3221
Q ss_pred ccee-cCCcceEE--CCcEEEEEeeCC---------CCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-----
Q 017748 194 YFWV-TGTCSVFV--NGALHWTAALNQ---------DADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL----- 256 (366)
Q Consensus 194 ~~~~-~~~~~v~~--~G~lYw~~~~~~---------~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~----- 256 (366)
.... .....+.+ +|.+|+...... .......|..+|.. +++..+.- .. . ....++..
T Consensus 112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~--~-~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AF--Q-FPNGIAVRHMNDG 185 (314)
T ss_dssp TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EE--S-SEEEEEEEECTTS
T ss_pred CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CC--C-CcceEEEecccCC
Confidence 1111 11224444 577766543220 00111379999987 55543310 00 0 11122222
Q ss_pred CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEE---eccCCCceeeEEEEecCCcEEEEEe-eCCeEEEEeCCC
Q 017748 257 GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLAT---LLNVGGGNVKPLVYSRSEDKVLLHA-VRGDLCWYDLER 331 (366)
Q Consensus 257 ~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~---i~~~~~~~~~~~~~~~~g~~i~~~~-~~~~~~~yd~~t 331 (366)
+| .|++...... .+.+|.++.. ........ ++....+...-+++..+| .+++.. .++.+..||+++
T Consensus 186 dg~~l~v~~~~~~-----~i~~~~~~~~---g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 186 RPYQLIVAETPTK-----KLWSYDIKGP---AKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp CEEEEEEEETTTT-----EEEEEEEEET---TEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTC
T ss_pred CCCEEEEEECCCC-----eEEEEECCCC---CccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCC
Confidence 34 4555544332 6777766531 22332222 221110112224445556 777765 356799999996
Q ss_pred CeE
Q 017748 332 HRV 334 (366)
Q Consensus 332 ~~~ 334 (366)
++.
T Consensus 257 g~~ 259 (314)
T 1pjx_A 257 GQP 259 (314)
T ss_dssp BSC
T ss_pred CcE
Confidence 554
No 170
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=73.63 E-value=50 Score=29.46 Aligned_cols=184 Identities=9% Similarity=0.022 Sum_probs=97.0
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
..++ ++|..|++...+..... ....+.+.|.. .+ ++... .......+.+++..++..+.+.......
T Consensus 203 ~~i~-~~d~~tg~~~~l~~~~~-------~~~~~~~spdg-~~-la~~~---~~~g~~~i~~~d~~~~~~~~l~~~~~~~ 269 (415)
T 2hqs_A 203 SALV-IQTLANGAVRQVASFPR-------HNGAPAFSPDG-SK-LAFAL---SKTGSLNLYVMDLASGQIRQVTDGRSNN 269 (415)
T ss_dssp CEEE-EEETTTCCEEEEECCSS-------CEEEEEECTTS-SE-EEEEE---CTTSSCEEEEEETTTCCEEECCCCSSCE
T ss_pred cEEE-EEECCCCcEEEeecCCC-------cccCEEEcCCC-CE-EEEEE---ecCCCceEEEEECCCCCEEeCcCCCCcc
Confidence 4688 99999988776643321 23355666542 23 22221 1122456888898888776654322111
Q ss_pred ecCCcceE--ECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCC
Q 017748 197 VTGTCSVF--VNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDD 272 (366)
Q Consensus 197 ~~~~~~v~--~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~ 272 (366)
..+. -+|. +++..... + ...|..+|+.+.+...+..... ....+... +|+..++...... .
T Consensus 270 ----~~~~~spdg~~l~~~s~~~-g---~~~i~~~d~~~~~~~~l~~~~~-----~~~~~~~spdG~~l~~~~~~~g--~ 334 (415)
T 2hqs_A 270 ----TEPTWFPDSQNLAFTSDQA-G---RPQVYKVNINGGAPQRITWEGS-----QNQDADVSSDGKFMVMVSSNGG--Q 334 (415)
T ss_dssp ----EEEEECTTSSEEEEEECTT-S---SCEEEEEETTSSCCEECCCSSS-----EEEEEEECTTSSEEEEEEECSS--C
T ss_pred ----cceEECCCCCEEEEEECCC-C---CcEEEEEECCCCCEEEEecCCC-----cccCeEECCCCCEEEEEECcCC--c
Confidence 1122 2565 44443222 1 1378899998876544432211 22223332 4654444443321 1
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v 337 (366)
..+.+|-++. .+.. .+..... ....++.++|..|++...+. .++.+|++++..+.+
T Consensus 335 ~~i~~~d~~~----~~~~---~l~~~~~--~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 335 QHIAKQDLAT----GGVQ---VLSSTFL--DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEEEEEETTT----CCEE---ECCCSSS--CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred eEEEEEECCC----CCEE---EecCCCC--cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 1455554443 2222 2221111 44556778887777776554 699999999988887
No 171
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=73.25 E-value=37 Score=27.88 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=79.3
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~ 223 (366)
..++.+|+..+. +.... . ....+.+|+..++.-+.+.... . ....++.+ +|.+||..... .
T Consensus 38 ~~gi~~d~~~~~--ly~~d---~--~~~~I~~~~~~g~~~~~~~~~~--~-~~p~~ia~d~~~~~lyv~d~~~------~ 101 (267)
T 1npe_A 38 IIGLAFDCVDKV--VYWTD---I--SEPSIGRASLHGGEPTTIIRQD--L-GSPEGIALDHLGRTIFWTDSQL------D 101 (267)
T ss_dssp EEEEEEETTTTE--EEEEE---T--TTTEEEEEESSSCCCEEEECTT--C-CCEEEEEEETTTTEEEEEETTT------T
T ss_pred EEEEEEecCCCE--EEEEE---C--CCCEEEEEecCCCCcEEEEECC--C-CCccEEEEEecCCeEEEEECCC------C
Confidence 456777775442 22211 1 1346777877654322221110 0 11224444 47899876543 4
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.......+ .+... .....++.. +|.||++..... .-.|+.++-.+. -.+ .+....+.
T Consensus 102 ~I~~~~~~g~~~~~~-~~~~~---~~P~~i~vd~~~g~lyv~~~~~~-----~~~I~~~~~dg~---~~~--~~~~~~~~ 167 (267)
T 1npe_A 102 RIEVAKMDGTQRRVL-FDTGL---VNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHMDGT---NRR--ILAQDNLG 167 (267)
T ss_dssp EEEEEETTSCSCEEE-ECSSC---SSEEEEEEETTTTEEEEEECCSS-----SCEEEEEETTSC---CCE--EEECTTCS
T ss_pred EEEEEEcCCCCEEEE-EECCC---CCccEEEEeeCCCEEEEEECCCC-----CcEEEEEecCCC---CcE--EEEECCCC
Confidence 799999875433332 12111 112234443 688998765421 123444433221 111 12112221
Q ss_pred eeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v 337 (366)
...-+++..+++.||+.... .++..+|++++..+.+
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 13334455556688887653 4699999987665544
No 172
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=73.15 E-value=68 Score=30.81 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=48.1
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC----
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG---- 299 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---- 299 (366)
.|..+|+.+.+-.. .+.... ....+....+..+++...+. .+.||-++.. ..+..+....
T Consensus 584 ~i~iwd~~~~~~~~-~~~~~~----~v~~~~~sp~~~~l~~~~~~-----~i~iwd~~~~------~~~~~~~~~~~~~~ 647 (694)
T 3dm0_A 584 VVLLWDLAEGKKLY-SLEANS----VIHALCFSPNRYWLCAATEH-----GIKIWDLESK------SIVEDLKVDLKAEA 647 (694)
T ss_dssp BCEEEETTTTEEEE-CCBCSS----CEEEEEECSSSSEEEEEETT-----EEEEEETTTT------EEEEEECCCCC---
T ss_pred eEEEEECCCCceEE-EecCCC----cEEEEEEcCCCcEEEEEcCC-----CEEEEECCCC------CChhhhcccccccc
Confidence 68889998765422 221111 22233444444444444444 7999987652 1122221100
Q ss_pred --------------CceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 300 --------------GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 300 --------------~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
.-...-+.+..+|..|+-...++.+..||+..
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 648 EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 00133456677886677677788899998753
No 173
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=72.80 E-value=37 Score=27.63 Aligned_cols=189 Identities=11% Similarity=0.001 Sum_probs=89.2
Q ss_pred eeceeEEe-ec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 105 SCNGLLAL-ED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 105 s~~Gll~~-~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
..+|-+.+ .+ ....+. ++|+.++....++..... ...++.+|+. +. +.... . ...+.+|+..
T Consensus 32 ~~~g~l~v~~~~~~~~i~-~~~~~~~~~~~~~~~~~~------~p~~i~~~~~-g~--l~v~~--~----~~~i~~~d~~ 95 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVV-KLATGSTGTTVLPFNGLY------QPQGLAVDGA-GT--VYVTD--F----NNRVVTLAAG 95 (270)
T ss_dssp CTTCCEEEEECSSSCEEE-EECC-----EECCCCSCC------SCCCEEECTT-CC--EEEEE--T----TTEEEEECTT
T ss_pred CCCCCEEEEccCCCCcEE-EecCCCcccceEeeCCcC------CcceeEECCC-CC--EEEEc--C----CCEEEEEeCC
Confidence 34555544 43 456677 899888776655433211 2234666664 22 22221 1 2356777776
Q ss_pred CCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC 259 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~ 259 (366)
++.-........ ....++.+ +|.+|+..... ..|..+|..+............ ....++.. +|+
T Consensus 96 ~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~----~p~~i~~~~~g~ 162 (270)
T 1rwi_B 96 SNNQTVLPFDGL---NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGLN----DPDGVAVDNSGN 162 (270)
T ss_dssp CSCCEECCCCSC---SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCCSCC----SCCCEEECTTCC
T ss_pred CceEeeeecCCc---CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeeccccCC----CceeEEEeCCCC
Confidence 654443321110 01113333 57776654433 3788888776544332211100 11123333 578
Q ss_pred EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeE--EEEecCCcEEEEEee-CCeEEEEeCCCCeEEE
Q 017748 260 LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKP--LVYSRSEDKVLLHAV-RGDLCWYDLERHRVRS 336 (366)
Q Consensus 260 L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~--~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~ 336 (366)
|++...... .+.+|..+. . ... ......+ ..| +++..+| .+++... ++.+..||++++....
T Consensus 163 l~v~~~~~~-----~i~~~~~~~--~-~~~----~~~~~~~--~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 163 VYVTDTDNN-----RVVKLEAES--N-NQV----VLPFTDI--TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEEEGGGT-----EEEEECTTT--C-CEE----ECCCSSC--CSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEE
T ss_pred EEEEECCCC-----EEEEEecCC--C-ceE----eecccCC--CCceEEEECCCC-CEEEEECCCCcEEEEcCCCCccee
Confidence 887765443 555554332 1 111 1111111 334 4444555 7777764 4469999998876544
Q ss_pred e
Q 017748 337 I 337 (366)
Q Consensus 337 v 337 (366)
.
T Consensus 228 ~ 228 (270)
T 1rwi_B 228 L 228 (270)
T ss_dssp C
T ss_pred e
Confidence 3
No 174
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=71.98 E-value=40 Score=27.73 Aligned_cols=191 Identities=9% Similarity=-0.009 Sum_probs=95.6
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|.+.+.. ....++ ++||. ++...+..+. . .....++.+|+.. . +.... . ....+.+|+. ++
T Consensus 66 ~~g~l~v~~~~~~~i~-~~~~~-g~~~~~~~~~-~----~~~~~~i~~~~~g-~--l~v~~--~---~~~~i~~~d~-~g 129 (299)
T 2z2n_A 66 SDGEVWFTENAANKIG-RITKK-GIIKEYTLPN-P----DSAPYGITEGPNG-D--IWFTE--M---NGNRIGRITD-DG 129 (299)
T ss_dssp TTSCEEEEETTTTEEE-EECTT-SCEEEEECSS-T----TCCEEEEEECTTS-C--EEEEE--T---TTTEEEEECT-TC
T ss_pred CCCCEEEeCCCCCeEE-EECCC-CcEEEEeCCC-c----CCCceeeEECCCC-C--EEEEe--c---CCceEEEECC-CC
Confidence 456665544 345688 88986 4444443221 1 1234566777532 2 22211 0 1235666766 55
Q ss_pred cEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEE
Q 017748 185 SWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 185 ~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
........... ....++.+ +|.+|+..... ..|..+|. ++++..+.+|... .....++.. +|+|+
T Consensus 130 ~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~ 197 (299)
T 2z2n_A 130 KIREYELPNKG--SYPSFITLGSDNALWFTENQN------NAIGRITE-SGDITEFKIPTPA---SGPVGITKGNDDALW 197 (299)
T ss_dssp CEEEEECSSTT--CCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEE
T ss_pred CEEEecCCCCC--CCCceEEEcCCCCEEEEeCCC------CEEEEEcC-CCcEEEeeCCCCC---CcceeEEECCCCCEE
Confidence 55443211000 11123333 47776654322 37999999 7777766555432 122234443 57888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEE--EEecCCcEEEEEe-eCCeEEEEeCCCCeEEEee
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPL--VYSRSEDKVLLHA-VRGDLCWYDLERHRVRSIV 338 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~--~~~~~g~~i~~~~-~~~~~~~yd~~t~~~~~v~ 338 (366)
+...... .+.+|-. . ..... ..++. .. ..|. ++..+| .+++.. .++.+..||+ +++.+.+
T Consensus 198 v~~~~~~-----~i~~~~~--~---g~~~~-~~~~~-~~--~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~- 260 (299)
T 2z2n_A 198 FVEIIGN-----KIGRITT--S---GEITE-FKIPT-PN--ARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNIIEEY- 260 (299)
T ss_dssp EEETTTT-----EEEEECT--T---CCEEE-EECSS-TT--CCEEEEEECSTT-CEEEEETTTTEEEEEET-TTEEEEE-
T ss_pred EEccCCc-----eEEEECC--C---CcEEE-EECCC-CC--CCceeEEECCCC-CEEEeccCCceEEEECC-CCceEEE-
Confidence 7654332 4544433 2 22332 22221 12 3344 444555 677775 3467999999 5676665
Q ss_pred eec
Q 017748 339 EID 341 (366)
Q Consensus 339 ~~~ 341 (366)
.+.
T Consensus 261 ~~~ 263 (299)
T 2z2n_A 261 PIQ 263 (299)
T ss_dssp ECS
T ss_pred eCC
Confidence 444
No 175
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=71.75 E-value=38 Score=28.63 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=55.5
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.++.+|..+++...+.+.... .....+... +|+..++. .. .+.+|-++. ...+..++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp~dg~~l~~~--~~-----~v~~~d~~~------~~~~~~~~~~~~- 296 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLT---ELYFTGLRSPKDPNQIYGV--LN-----RLAKYDLKQ------RKLIKAANLDHT- 296 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECS---SCEEEEEECSSCTTEEEEE--ES-----EEEEEETTT------TEEEEEEECSSC-
T ss_pred eEEEEeccCCcEEecccccCC---CcceeeEecCCCCCEEEEE--cC-----eEEEEECcc------CeEEEEEcCCCC-
Confidence 345577777766655432211 112222222 45444333 32 788887654 223334433221
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
..-+++..+|+.|++...++.+..||+++++......+.+
T Consensus 297 -~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~ 336 (349)
T 1jmx_B 297 -YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 336 (349)
T ss_dssp -CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred -ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCC
Confidence 3346677788778887666779999999987544335553
No 176
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=70.33 E-value=22 Score=30.07 Aligned_cols=109 Identities=6% Similarity=-0.065 Sum_probs=55.9
Q ss_pred CCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|. +||..... ..|..+|.. ++.+.+..|... ...+... +|+|+++..... .+.+|..+
T Consensus 55 ~g~~l~~~d~~~------~~i~~~~~~-g~~~~~~~~~~~-----~~gl~~d~dG~l~v~~~~~~-----~v~~~~~~-- 115 (305)
T 3dr2_A 55 AQRTLVWSDLVG------RRVLGWRED-GTVDVLLDATAF-----TNGNAVDAQQRLVHCEHGRR-----AITRSDAD-- 115 (305)
T ss_dssp GGTEEEEEETTT------TEEEEEETT-SCEEEEEESCSC-----EEEEEECTTSCEEEEETTTT-----EEEEECTT--
T ss_pred CCCEEEEEECCC------CEEEEEeCC-CCEEEEeCCCCc-----cceeeECCCCCEEEEECCCC-----EEEEECCC--
Confidence 454 88886544 378999984 445554433322 1223332 678776544222 44444332
Q ss_pred CCCCceEEEEEe-ccCCCceeeEEEEecCCcEEEEEe------------------eCCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATL-LNVGGGNVKPLVYSRSEDKVLLHA------------------VRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~i~~~~------------------~~~~~~~yd~~t~~~~~v 337 (366)
++...+... ....+....-+.+..+| .+++.. ....++.||+++++++.+
T Consensus 116 ---g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 ---GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp ---SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred ---CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 223332211 11111012235566666 777731 123599999988887766
No 177
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=70.13 E-value=49 Score=27.98 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=59.1
Q ss_pred ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE----CCeEEEEEeecCCCCCCcEEEEE
Q 017748 205 VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL----GGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 205 ~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~----~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
-+|.+...+..+ ..|..+|+.+.+.... ..+. ....+... +|...+++..+. .+.+|-
T Consensus 178 ~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d 240 (357)
T 3i2n_A 178 QEERVVCAGYDN------GDIKLFDLRNMALRWETNIKN------GVCSLEFDRKDISMNKLVATSLEG-----KFHVFD 240 (357)
T ss_dssp -CCCEEEEEETT------SEEEEEETTTTEEEEEEECSS------CEEEEEESCSSSSCCEEEEEESTT-----EEEEEE
T ss_pred CCCCEEEEEccC------CeEEEEECccCceeeecCCCC------ceEEEEcCCCCCCCCEEEEECCCC-----eEEEEe
Confidence 356655555443 3799999998775333 2211 22233433 466666655454 899998
Q ss_pred eccCCCCCceEEEEEe-ccCCCceeeEEEEecCCcEEEE-EeeCCeEEEEeCCCC
Q 017748 280 MKEYGVNDSWTKLATL-LNVGGGNVKPLVYSRSEDKVLL-HAVRGDLCWYDLERH 332 (366)
Q Consensus 280 l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~i~~-~~~~~~~~~yd~~t~ 332 (366)
+............ .. .... ...-+.+.+++..+++ ...++.+..||++++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 241 MRTQHPTKGFASV-SEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEETTTEEEEE-EEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CcCCCcccceeee-ccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8764322222211 11 1111 1445666777742444 455677999998864
No 178
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=70.07 E-value=55 Score=28.53 Aligned_cols=194 Identities=13% Similarity=0.064 Sum_probs=94.3
Q ss_pred EEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC--cEE
Q 017748 110 LALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN--SWR 187 (366)
Q Consensus 110 l~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~--~W~ 187 (366)
++....+..+. +||..+++....-........ ......+.+.+..+.+-+ ... ....+.+++.+.. .-+
T Consensus 173 l~s~s~D~~i~-~wd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~-sgs------~D~~v~~wd~~~~~~~~~ 243 (380)
T 3iz6_a 173 LITGSGDQTCV-LWDVTTGQRISIFGSEFPSGH-TADVLSLSINSLNANMFI-SGS------CDTTVRLWDLRITSRAVR 243 (380)
T ss_dssp EEEECTTSCEE-EECTTTCCEEEEECCCSSSSC-CSCEEEEEECSSSCCEEE-EEE------TTSCEEEEETTTTCCCCE
T ss_pred EEEECCCCcEE-EEEcCCCcEEEEeecccCCCC-ccCeEEEEeecCCCCEEE-EEE------CCCeEEEEECCCCCcceE
Confidence 44444556778 999998876543221111110 123444555443333322 221 1446788887532 222
Q ss_pred EccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCC--CCceEEEEEE-CCeEE
Q 017748 188 RIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGI--EGYYILLEAL-GGCLC 261 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~--~~~~~~l~~~-~g~L~ 261 (366)
.+..-. ..-.++.+ +|.....+..+ ..|..+|+.+.+-.. +........ ......+... +|++.
T Consensus 244 ~~~~h~----~~v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 313 (380)
T 3iz6_a 244 TYHGHE----GDINSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313 (380)
T ss_dssp EECCCS----SCCCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE
T ss_pred EECCcC----CCeEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE
Confidence 221110 01112222 35443333332 368999998865433 333222100 0011123332 57776
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc---CCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN---VGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
+++..+. .+.+|-+... ..+..+.. ...+...-+++..+|..|+-...|+.+..||+.+++
T Consensus 314 ~~g~~dg-----~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 314 FAGYSNG-----DCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECTTS-----CEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCC-----CEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6666554 8999976542 12223321 111224556777888666666667779999988753
No 179
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.78 E-value=56 Score=28.49 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=58.4
Q ss_pred EEEEEECCCceeeee---CCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC
Q 017748 224 IIIAFDLKSEEFYQV---PLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV 298 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 298 (366)
.|..+|+.+++-... ..|... ......+.. .++.+.+.+..+. .+.+|-+...+. .+..+...
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~~-----~~~~~~~h 248 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGH--TADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITSR-----AVRTYHGH 248 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSC--CSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTCC-----CCEEECCC
T ss_pred cEEEEEcCCCcEEEEeecccCCCC--ccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCCc-----ceEEECCc
Confidence 688999988765332 222222 112223333 2567777666555 899998864321 11222110
Q ss_pred CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 299 GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 299 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. +...-+++.++|..++-...++.+..||+++++...+
T Consensus 249 ~-~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 249 E-GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp S-SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred C-CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 0 1144466777775666667777899999999876554
No 180
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=69.41 E-value=81 Score=30.14 Aligned_cols=191 Identities=12% Similarity=-0.029 Sum_probs=96.9
Q ss_pred eeeceeEEeec-CCccEEEEEeccccce-e-ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRH-R-VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~-~-~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
+..+|.|...+ ...++. ..++-.... . .+.. . .....++++|...+. ++... .....+++++
T Consensus 48 ~~~~~~ly~sD~~~~~I~-r~~~~g~~~~~~v~~~-~------~~~P~GlAvD~~~~~--ly~~d-----~~~~~I~v~~ 112 (619)
T 3s94_A 48 VFSHGLIYWSDVSEEAIK-RTEFNKTESVQNVVVS-G------LLSPDGLACDWLGEK--LYWTD-----SETNRIEVSN 112 (619)
T ss_dssp ETTTTEEEEEETTTTEEE-EEEC-----CEEEECS-S------CSCEEEEEEETTTTE--EEEEE-----TTTTEEEEEE
T ss_pred EeCCCEEEEEECCCCeEE-EEEccCCCceEEEEeC-C------CCCcCeEEEEecCCE--EEEEe-----CCCCEEEEEE
Confidence 44577777665 445677 778765531 2 2221 1 124668888886542 33321 1245677888
Q ss_pred ecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-
Q 017748 181 LRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL- 256 (366)
Q Consensus 181 s~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 256 (366)
.....=+.+..- ......++.+ +|.+||...... ..|..+++....-..+--. .. ...--|+.-
T Consensus 113 ~dG~~~~~l~~~---~l~~P~~Iavdp~~g~ly~tD~g~~-----~~I~r~~~dG~~~~~l~~~-~~---~~P~Glald~ 180 (619)
T 3s94_A 113 LDGSLRKVLFWQ---ELDQPRAIALDPSSGFMYWTDWGEV-----PKIERAGMDGSSRFIIINS-EI---YWPNGLTLDY 180 (619)
T ss_dssp TTSCSCEEEECS---SCSCCCCEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEEEECS-SC---SSEEEEEEET
T ss_pred CCCCCEEEEEeC---CCCCCceEEEecCCCeEEEeccCCC-----CEEEEEECCCCceEEEEeC-CC---CCCcEEEEEc
Confidence 765432333210 0112335666 589999864321 3799999875433333111 11 012223443
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-CeEEEEeCCCCeE
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-GDLCWYDLERHRV 334 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-~~~~~yd~~t~~~ 334 (366)
+++||++..... .||..+-.+. ... .+....+ ..|.++.-.++.||+.... ..+...|..+++-
T Consensus 181 ~~~~LY~aD~~~~-------~I~~~~~dG~-~~~----~~~~~~~--~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 181 EEQKLYWADAKLN-------FIHKSNLDGT-NRQ----AVVKGSL--PHPFALTLFEDILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TTTEEEEEETTTC-------CEEEESSSCC-EEC---------------CCCEEESSSEEEEECTTTCSEEEEESSSCCC
T ss_pred cCCEEEEEeCCCC-------eEEEecCCCC-ccE----EEEeCCC--CCceEEEEeCCEEEEecCCCCEEEEEECCCCcc
Confidence 689999865432 3666665432 111 1111122 5566666566678887543 3599999988864
Q ss_pred E
Q 017748 335 R 335 (366)
Q Consensus 335 ~ 335 (366)
.
T Consensus 247 ~ 247 (619)
T 3s94_A 247 L 247 (619)
T ss_dssp C
T ss_pred c
Confidence 3
No 181
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=69.32 E-value=61 Score=28.70 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=39.5
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
|.+.+.+..+. .+.+|-+... ..+..+.... ....-+.+..+|..|+-...++.+..||.++++.
T Consensus 308 g~~l~sgs~D~-----~i~iwd~~~~------~~~~~~~~h~-~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 308 GPFLLSGSRDK-----TIKMWDVSTG------MCLMTLVGHD-NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp CCEEEEEETTS-----EEEEEETTTT------EEEEEEECCS-SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred CCEEEEEeCCC-----eEEEEECCCC------ceEEEEECCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 45555555444 8999987652 1233332111 1144456677775666667778899999988764
No 182
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=68.45 E-value=65 Score=28.69 Aligned_cols=109 Identities=10% Similarity=-0.013 Sum_probs=60.2
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
+|.|||..... ..|..+|+.......+. .... .....|++ .+|.||+...... -.|++.+-.
T Consensus 170 ~~~lY~~d~~~------~~I~~~~~~g~~~~~l~-~~~~---~~P~~iavdp~~g~ly~td~~~~------~~I~~~~~d 233 (400)
T 3p5b_L 170 HSNIYWTDSVL------GTVSVADTKGVKRKTLF-RENG---SKPRAIVVDPVHGFMYWTDWGTP------AKIKKGGLN 233 (400)
T ss_dssp TTEEEEEETTT------TEEEEECTTTCSEEEEE-ECSS---CCEEEEEEETTTTEEEEEECSSS------CCEEEEETT
T ss_pred CCceEEEECCC------CeEEEEeCCCCceEEEE-eCCC---CCcceEEEecccCeEEEEeCCCC------CEEEEEeCC
Confidence 68999987554 47999999865543331 1111 01223444 3688888764321 235555543
Q ss_pred CCCCceEEEEEeccCCCceeeEEEE--ecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWTKLATLLNVGGGNVKPLVY--SRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~--~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
+.. +..+....+ ..|.++ ..+++.||+... ..++..+|++....+.+
T Consensus 234 G~~-----~~~~~~~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 234 GVD-----IYSLVTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp SCS-----CEEEECSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred CCc-----cEEEEECCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 321 112212222 455554 444668888754 34688999887766666
No 183
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=68.45 E-value=87 Score=30.16 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=26.2
Q ss_pred EEEEecCCcEEEEEeeCC-------------------eEEEEeCCCCeEEEeeeec
Q 017748 305 PLVYSRSEDKVLLHAVRG-------------------DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 305 ~~~~~~~g~~i~~~~~~~-------------------~~~~yd~~t~~~~~v~~~~ 341 (366)
..++..+++.|++...+. .++++|++|++..+-++..
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 345555565788776433 3999999999988775553
No 184
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=68.10 E-value=54 Score=27.61 Aligned_cols=177 Identities=6% Similarity=-0.044 Sum_probs=87.9
Q ss_pred cCCccEEEEEeccccc----eeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe-cCCcEEE
Q 017748 114 DSRRNIMLLLNPLTKR----HRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL-RVNSWRR 188 (366)
Q Consensus 114 ~~~~~~~~V~NP~t~~----~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss-~t~~W~~ 188 (366)
..+..+. |||..+++ ...+.. . ......+.+.+. +.+.++.... ...+.+|+. .++.-..
T Consensus 30 ~~d~~v~-iw~~~~~~~~~~~~~~~~----~---~~~v~~~~~~~~-~~~~l~~~~~------dg~i~~wd~~~~~~~~~ 94 (342)
T 1yfq_A 30 SWDGSLT-VYKFDIQAKNVDLLQSLR----Y---KHPLLCCNFIDN-TDLQIYVGTV------QGEILKVDLIGSPSFQA 94 (342)
T ss_dssp ETTSEEE-EEEEETTTTEEEEEEEEE----C---SSCEEEEEEEES-SSEEEEEEET------TSCEEEECSSSSSSEEE
T ss_pred cCCCeEE-EEEeCCCCccccceeeee----c---CCceEEEEECCC-CCcEEEEEcC------CCeEEEEEeccCCceEe
Confidence 3445566 77877665 332221 1 123445666654 4423433321 446888988 7776655
Q ss_pred ccC--CCcceecCCcceEEC-CcEEEEEeeCCCCCCCcEEEEEECCC---------cee-eeeCCCCccCCCCceEEEEE
Q 017748 189 IQD--FPYFWVTGTCSVFVN-GALHWTAALNQDADRNDIIIAFDLKS---------EEF-YQVPLPPIVGIEGYYILLEA 255 (366)
Q Consensus 189 ~~~--~~~~~~~~~~~v~~~-G~lYw~~~~~~~~~~~~~i~~fD~~~---------~~~-~~i~lP~~~~~~~~~~~l~~ 255 (366)
+.. ...... .+.+. |.....+..+ ..|..+|+.+ .+. ..+..+ .....+..
T Consensus 95 ~~~~~~~~~v~----~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~ 158 (342)
T 1yfq_A 95 LTNNEANLGIC----RICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKVK------NKIFTMDT 158 (342)
T ss_dssp CBSCCCCSCEE----EEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSSC------CCEEEEEE
T ss_pred ccccCCCCceE----EEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEeeC------CceEEEEe
Confidence 543 221111 12221 4443333333 3788898875 321 111211 12233444
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEecc-CCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEEeeCCeEEEEeCCCC
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKE-YGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~-~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
..+. .++...+. .+.+|-++. ... .... ........ ..-+.+.. +++.++....++.+..||.+++
T Consensus 159 ~~~~-l~~~~~d~-----~i~i~d~~~~~~~--~~~~-~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 159 NSSR-LIVGMNNS-----QVQWFRLPLCEDD--NGTI-EESGLKYQ--IRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CSSE-EEEEESTT-----EEEEEESSCCTTC--CCEE-EECSCSSC--EEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred cCCc-EEEEeCCC-----eEEEEECCccccc--ccee-eecCCCCc--eeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 4455 33333333 899999876 321 1111 11222211 44556666 6756666677777888888765
No 185
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=67.25 E-value=13 Score=32.66 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.5
Q ss_pred CcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 312 EDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 312 g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++.||+...++++++.|++|++..+.+...
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 448888888889999999999999886665
No 186
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=66.70 E-value=82 Score=29.19 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=42.9
Q ss_pred CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc---eeeEEEEecC-CcEEEEEeeCCeEEEEeCCC
Q 017748 257 GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG---NVKPLVYSRS-EDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 257 ~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~---~~~~~~~~~~-g~~i~~~~~~~~~~~yd~~t 331 (366)
+|+ +.+....+. .+.+|.++. ...+..+.... + ...-+.+.++ +..++....++.+..||+++
T Consensus 171 ~~~~~l~~~~~d~-----~v~vwd~~~------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 171 SRPMRSMTVGDDG-----SVVFYQGPP------FKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp SSSCEEEEEETTT-----EEEEEETTT------BEEEEEECSSS-CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred CCCcEEEEEeCCC-----cEEEEeCCC------cceeeeecccC-CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 344 444444444 899997654 34444554211 1 2445666777 75666667777899999999
Q ss_pred CeEEEe
Q 017748 332 HRVRSI 337 (366)
Q Consensus 332 ~~~~~v 337 (366)
++....
T Consensus 239 ~~~~~~ 244 (615)
T 1pgu_A 239 GEFLKY 244 (615)
T ss_dssp CCEEEE
T ss_pred CCEeEE
Confidence 886655
No 187
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=66.27 E-value=70 Score=28.26 Aligned_cols=189 Identities=9% Similarity=0.003 Sum_probs=94.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+.+++.. ...+. ..++.++....+-.. .....++.+|+..+. |+.. +. ....+..++...+..
T Consensus 87 ~~~l~~~~-~~~I~-~i~~~~~~~~~~~~~-------~~~~~gl~~d~~~~~--ly~~---D~--~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 87 EPVLLFAN-RIDIR-QVLPHRSEYTLLLNN-------LENAIALDFHHRREL--VFWS---DV--TLDRILRANLNGSNV 150 (386)
T ss_dssp CCEEEEEC-BSCEE-EECTTSCCCEEEECS-------CSCEEEEEEETTTTE--EEEE---ET--TTTEEEEEETTSCCE
T ss_pred cceeEeec-Cccce-eeccCCCcEEEEecC-------CCccEEEEEecCCCe--EEEE---eC--CCCcEEEEecCCCCc
Confidence 34444443 34566 667666554433221 124567888876542 2222 11 134566777766555
Q ss_pred EEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEE
Q 017748 187 RRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLC 261 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~ 261 (366)
+.+..... ....++.+ +|.+||..... ..|..+|+....-..+. .... .....|++- +|.||
T Consensus 151 ~~~~~~~~---~~p~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~-~~~l---~~P~giavdp~~g~ly 217 (386)
T 3v65_B 151 EEVVSTGL---ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSL---EKPRAIALHPMEGTIY 217 (386)
T ss_dssp EEEECSSC---SCCCCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEE-CSSC---SCEEEEEEETTTTEEE
T ss_pred EEEEeCCC---CCccEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEee-cCCC---CCCcEEEEEcCCCeEE
Confidence 44321110 11224444 58999987554 37999998754433321 1111 112234443 67888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEE--ecCCcEEEEEeeC-CeEEEEeCCCCeEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVY--SRSEDKVLLHAVR-GDLCWYDLERHRVRSI 337 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v 337 (366)
+..... .-.|+.++-.+.. +..+-...+ ..|.++ ..+++.||+.... .++..+|++...-+.+
T Consensus 218 ~td~~~------~~~I~r~~~dG~~-----~~~~~~~~~--~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 218 WTDWGN------TPRIEASSMDGSG-----RRIIADTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEECSS------SCEEEEEETTSCS-----CEEEECSSC--SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred EeccCC------CCEEEEEeCCCCC-----cEEEEECCC--CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 875432 2346666543321 111211222 445444 4345578887543 4588888876554444
No 188
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=66.24 E-value=68 Score=28.10 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=53.5
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+++.+.... ..... ....+... +|+..+.+..+. .+.+|-+... +- ...+.....
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~-----~v~iwd~~~~----~~--~~~~~~~~~- 208 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDR-----TVRIWDLRTG----QC--SLTLSIEDG- 208 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS-----EEEEEETTTT----EE--EEEEECSSC-
T ss_pred eEEEEECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCC-----cEEEEECCCC----ee--EEEEEcCCC-
Confidence 688999988765333 22221 12233333 455555454444 8999977652 12 223332221
Q ss_pred eeeEEEEec-CCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 302 NVKPLVYSR-SEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 302 ~~~~~~~~~-~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
...+++.. +|..++....++.+..||+++++...
T Consensus 209 -v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~ 243 (393)
T 1erj_A 209 -VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243 (393)
T ss_dssp -EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred -cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 44455555 56455556667779999999887543
No 189
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=66.18 E-value=64 Score=27.81 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=89.3
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
.++....+..+. +||..+++....-. .+ ......+.+.+..+.-.++.... ...+.+++.+++....
T Consensus 168 ~l~t~s~D~~v~-lwd~~~~~~~~~~~--~h----~~~v~~~~~~~~~~g~~l~sgs~------Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 168 QILTASGDGTCA-LWDVESGQLLQSFH--GH----GADVLCLDLAPSETGNTFVSGGC------DKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp EEEEEETTSEEE-EEETTTCCEEEEEE--CC----SSCEEEEEECCCSSCCEEEEEET------TSCEEEEETTTCCEEE
T ss_pred EEEEEeCCCcEE-EEeCCCCeEEEEEc--CC----CCCeEEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCcEEE
Confidence 333333456677 99988877543111 11 11233445555432223333221 4468888887765432
Q ss_pred -ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEE
Q 017748 189 -IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 189 -~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
+..-... -.++.+ +|.....+..+ ..|..+|+.+.+-..+ ..+... .....+... +|++.++
T Consensus 235 ~~~~h~~~----v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 235 AFETHESD----VNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSKESII---FGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EECCCSSC----EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTTCC---SCEEEEEECTTSSEEEE
T ss_pred EecCCCCC----eEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCCcc---cceeEEEEeCCCCEEEE
Confidence 1111111 112222 35544444333 3688899987654322 222111 011222222 5776666
Q ss_pred EeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEe
Q 017748 264 CKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd 328 (366)
+..+. .+.||-+... ..+..+.... +...-+++.++|..|+-...++.+..|+
T Consensus 302 g~~d~-----~i~vwd~~~~------~~~~~l~~h~-~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDY-----TINVWDVLKG------SRVSILFGHE-NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTS-----CEEEEETTTC------SEEEEECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCC-----cEEEEECCCC------ceEEEEECCC-CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 66554 8999987652 1233332111 1245567777886666666677777764
No 190
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=66.07 E-value=84 Score=29.11 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=54.8
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|+.+.+.....+.... .....+... +|++.+....+. .+.+|.++.. ..+..+.......
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~------~~~~~~~~~h~~~ 533 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLR---AKPSYISISPSETYIAAGDVMG-----KILLYDLQSR------EVKTSRWAFRTSK 533 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCS---SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTT------EEEECCSCCCSSC
T ss_pred eEEEEECCCccccccccCCcc---CceEEEEECCCCCEEEEcCCCC-----eEEEeeCCCC------cceeEeecCCCCc
Confidence 688899988766432222211 122333333 566666665554 8999988762 2223322101111
Q ss_pred eeEEEEec----------CCcEEEEEeeCCeEEEEeCCCC
Q 017748 303 VKPLVYSR----------SEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 303 ~~~~~~~~----------~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
..-+++.+ ++..|+....++.+..||++++
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 44456666 7756666666778999999996
No 191
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=65.50 E-value=1.1e+02 Score=30.04 Aligned_cols=198 Identities=10% Similarity=-0.026 Sum_probs=98.0
Q ss_pred eceeEEeecCCccEEEEEeccccceeecCCcC-----CCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 106 CNGLLALEDSRRNIMLLLNPLTKRHRVLPTFY-----RDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 106 ~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~-----~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
.+|-+-+......+. .+++.++.+..+...+ .... .....++..|... . +.+... ...+..|+
T Consensus 322 ~~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~v~~i~~d~~g-~---lWigt~-----~~Gl~~~~ 389 (781)
T 3v9f_A 322 SFNNIWIGTWGGGIN-FISNAPPTFHTWSYSPTQMNESSLS--NKVVSSVCDDGQG-K---LWIGTD-----GGGINVFE 389 (781)
T ss_dssp SSCCEEEEEBSSCEE-EECSSCCSCEEEC----CCCSSCCS--SSCEEEEEECTTS-C---EEEEEB-----SSCEEEEE
T ss_pred CCCCEEEEecCCeEE-EeCCCCCcceeeccCccccccCCCC--CcceEEEEEcCCC-C---EEEEeC-----CCcEEEEE
Confidence 345554443345577 8888888776664321 1111 1233444444421 1 222210 22466677
Q ss_pred ecCCcEEEccCCCccee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-
Q 017748 181 LRVNSWRRIQDFPYFWV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL- 256 (366)
Q Consensus 181 s~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 256 (366)
..++.++.... +.... ..-.+++. +|. .|++... ..+..||..++++..+..+ .. .......+.+-
T Consensus 390 ~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~-~~-~~~~v~~i~~d~ 459 (781)
T 3v9f_A 390 NGKRVAIYNKE-NRELLSNSVLCSLKDSEGN-LWFGTYL------GNISYYNTRLKKFQIIELE-KN-ELLDVRVFYEDK 459 (781)
T ss_dssp TTEEEEECC------CCCSBEEEEEECTTSC-EEEEETT------EEEEEECSSSCEEEECCST-TT-CCCCEEEEEECT
T ss_pred CCCCeEEEccC-CCCCCCcceEEEEECCCCC-EEEEecc------CCEEEEcCCCCcEEEeccC-CC-CCCeEEEEEECC
Confidence 76666654421 11110 11113333 354 4666543 3799999999999887543 11 01123344444
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC--ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG--GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
+|.|++.+. . .+. .++.. ...|..........+ ....-+....+| .|.+...+..++.||++++++
T Consensus 460 ~g~lwigt~--~-----Gl~--~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 460 NKKIWIGTH--A-----GVF--VIDLA--SKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFWIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp TSEEEEEET--T-----EEE--EEESS--SSSCCEEECTTTSSCSCSCEEEEEECTTC-CEEEEESSSCEEEECTTCCEE
T ss_pred CCCEEEEEC--C-----ceE--EEeCC--CCeEEecccCcccccccceeEEEEEcCCC-CEEEEEcCCCEEEEeCCCCeE
Confidence 578887654 2 343 34332 234555433221111 112223333444 788887655599999999998
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
+.+
T Consensus 528 ~~~ 530 (781)
T 3v9f_A 528 RKF 530 (781)
T ss_dssp EEE
T ss_pred EEc
Confidence 876
No 192
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=65.38 E-value=98 Score=29.64 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=57.6
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+.... .-.. .....+... +|++.+.+..+. .+.||-+... ..+..+.....
T Consensus 542 ~v~vwd~~~~~~~~~~~~h~-----~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~------~~~~~~~~~~~- 604 (694)
T 3dm0_A 542 TVKVWNLSNCKLRSTLAGHT-----GYVSTVAVSPDGSLCASGGKDG-----VVLLWDLAEG------KKLYSLEANSV- 604 (694)
T ss_dssp CEEEEETTTCCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----BCEEEETTTT------EEEECCBCSSC-
T ss_pred eEEEEECCCCcEEEEEcCCC-----CCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC------ceEEEecCCCc-
Confidence 688899987655332 2211 122334443 567666666555 8999988752 22333333222
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..-+++..++ .++....+..+..||+++++....
T Consensus 605 -v~~~~~sp~~-~~l~~~~~~~i~iwd~~~~~~~~~ 638 (694)
T 3dm0_A 605 -IHALCFSPNR-YWLCAATEHGIKIWDLESKSIVED 638 (694)
T ss_dssp -EEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEE
T ss_pred -EEEEEEcCCC-cEEEEEcCCCEEEEECCCCCChhh
Confidence 4556677777 566666666799999999987544
No 193
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=64.22 E-value=3.4 Score=24.03 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHccCC
Q 017748 4 SVQLPLDLIVDILIRLP 20 (366)
Q Consensus 4 ~~~LP~dll~~IL~rLP 20 (366)
+..||.|+.+|||+--.
T Consensus 21 F~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 21 FKQLPADIQEEILSGKS 37 (48)
T ss_dssp TTTSCHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHhcch
Confidence 46789999999987544
No 194
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=63.91 E-value=1e+02 Score=29.43 Aligned_cols=188 Identities=14% Similarity=0.060 Sum_probs=100.4
Q ss_pred eeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+..+|.|...+ ...++. .+++.......+-.... ....++++|...+ ++... +. ....+++++..
T Consensus 45 d~~~~~lywtD~~~~~I~-r~~~~g~~~~~v~~~g~------~~P~GlAvD~~~~--~LY~t---D~--~~~~I~v~~~d 110 (628)
T 4a0p_A 45 DVTDNRIYWTDISLKTIS-RAFMNGSALEHVVEFGL------DYPEGMAVDWLGK--NLYWA---DT--GTNRIEVSKLD 110 (628)
T ss_dssp ETTTTEEEEEETTTTEEE-EEETTSCSCEEEECSSC------SCCCEEEEETTTT--EEEEE---ET--TTTEEEEEETT
T ss_pred ECCCCEEEEEECCCCeEE-EEECCCCCcEEEEeCCC------CCcceEEEEeCCC--EEEEE---EC--CCCEEEEEecC
Confidence 33466666555 445667 77776654443332221 1344788887654 23222 11 14567788775
Q ss_pred CCcEEEcc--CCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-
Q 017748 183 VNSWRRIQ--DFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL- 256 (366)
Q Consensus 183 t~~W~~~~--~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 256 (366)
...=+.+. .+ ....++.+ +|.+||...... ..|..+|+.......+- . .. ....-|+.-
T Consensus 111 G~~~~~l~~~~l-----~~P~~iavdp~~G~lY~tD~g~~-----~~I~r~~~dG~~~~~l~-~-~~---~~P~GlalD~ 175 (628)
T 4a0p_A 111 GQHRQVLVWKDL-----DSPRALALDPAEGFMYWTEWGGK-----PKIDRAAMDGSERTTLV-P-NV---GRANGLTIDY 175 (628)
T ss_dssp STTCEEEECSSC-----CCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEEEE-C-SC---SSEEEEEEET
T ss_pred CCcEEEEEeCCC-----CCcccEEEccCCCeEEEeCCCCC-----CEEEEEeCCCCceEEEE-C-CC---CCcceEEEcc
Confidence 44323321 11 11224544 589999764321 38999999765444331 1 11 112223333
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
+++||++..... . |+..+-.+... ++ +.. .+ ..|.++.-.++.||+... ...+..+|..+++-
T Consensus 176 ~~~~LY~aD~~~~-----~--I~~~d~dG~~~---~v--~~~-~l--~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 176 AKRRLYWTDLDTN-----L--IESSNMLGLNR---EV--IAD-DL--PHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TTTEEEEEETTTT-----E--EEEEETTSCSC---EE--EEE-CC--SCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred ccCEEEEEECCCC-----E--EEEEcCCCCce---EE--eec-cC--CCceEEEEECCEEEEecCCCCEEEEEECCCCCc
Confidence 689999886443 3 55555433222 11 211 22 567777655668888765 45699999877763
Q ss_pred E
Q 017748 335 R 335 (366)
Q Consensus 335 ~ 335 (366)
.
T Consensus 241 ~ 241 (628)
T 4a0p_A 241 R 241 (628)
T ss_dssp C
T ss_pred e
Confidence 3
No 195
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=63.81 E-value=69 Score=27.33 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceE-EEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWT-KLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~-~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+|++.+.+..+. .+.||.+.......... ....+.... ....-+++..++..++-...++.+..||+++++..
T Consensus 38 d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 38 DSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHN-HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY 111 (343)
T ss_dssp CCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCS-SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE
T ss_pred CCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 456666555554 89999987532211111 122222111 12444566677755555666778999999988754
Q ss_pred E
Q 017748 336 S 336 (366)
Q Consensus 336 ~ 336 (366)
.
T Consensus 112 ~ 112 (343)
T 2xzm_R 112 K 112 (343)
T ss_dssp E
T ss_pred E
Confidence 3
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.96 E-value=84 Score=28.01 Aligned_cols=198 Identities=11% Similarity=-0.028 Sum_probs=97.9
Q ss_pred eceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 106 CNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 106 ~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
.+|-|.+.+ ....+. ++|+.+++...+.... .. .. +.+++..+ .++... .. ....+.+++..++
T Consensus 140 ~~g~lyv~d~~~~~I~-~id~~~g~~~~~~~~~------~~-~~-ia~~~~g~--~l~~~d---~~-~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVR-LISVDDNKVTTVHPGF------KG-GK-PAVTKDKQ--RVYSIG---WE-GTHTVYVYMKASG 204 (409)
T ss_dssp STTEEEEEETTTTEEE-EEETTTTEEEEEEETC------CB-CB-CEECTTSS--EEEEEB---SS-TTCEEEEEEGGGT
T ss_pred CCCCEEEEecCCCcEE-EEECCCCEEEEeeccC------CC-Cc-eeEecCCC--cEEEEe---cC-CCceEEEEEcCCC
Confidence 456555444 456788 9999988877664331 11 11 45555433 222211 11 1116777777543
Q ss_pred c-EEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCce-E-EEEEE-
Q 017748 185 S-WRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYY-I-LLEAL- 256 (366)
Q Consensus 185 ~-W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~-~-~l~~~- 256 (366)
. .+.+............++.+ +|.+|+ +... ..|..+|+.+.....+ ..+... ..... . .++..
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~------~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSN------KNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYF 276 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTT------CEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEET
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECC------CcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeC
Confidence 2 33331111101111123333 688998 3322 3799999987765554 111111 00111 1 44544
Q ss_pred -CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec-cCCC--------ceeeEEE--EecCCcEEEEEee--CC
Q 017748 257 -GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL-NVGG--------GNVKPLV--YSRSEDKVLLHAV--RG 322 (366)
Q Consensus 257 -~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~--------~~~~~~~--~~~~g~~i~~~~~--~~ 322 (366)
+|.||++..... . |+.++..+ .-..+..-. .... .+..|.+ +..+| .|++... ..
T Consensus 277 ~~g~lyv~d~~~~-----~--I~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~ 345 (409)
T 3hrp_A 277 VDSNFYMSDQNLS-----S--VYKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGY 345 (409)
T ss_dssp TTTEEEEEETTTT-----E--EEEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTC
T ss_pred CCCEEEEEeCCCC-----E--EEEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCC
Confidence 588888765332 3 44454322 111111111 0000 1244655 44566 5777754 45
Q ss_pred eEEEEeCCCCeEEEe
Q 017748 323 DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ~~~~yd~~t~~~~~v 337 (366)
++..+|+.+++...+
T Consensus 346 ~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 346 CLRKLDILDGYVSTV 360 (409)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCEEEEE
Confidence 699999888988777
No 197
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=62.68 E-value=71 Score=27.06 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=68.8
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC---CcEEEccCCC
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV---NSWRRIQDFP 193 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t---~~W~~~~~~~ 193 (366)
..++ ++||.+++...+.... ....++.+++.. .+-.|. . . ....+.+|+..+ +..+.+..++
T Consensus 165 g~v~-~~d~~~~~~~~~~~~~-------~~p~gia~~~dg-~~lyv~--d--~--~~~~I~~~~~~~~~~~~~~~~~~~~ 229 (322)
T 2fp8_A 165 GRLI-KYDPSTKETTLLLKEL-------HVPGGAEVSADS-SFVLVA--E--F--LSHQIVKYWLEGPKKGTAEVLVKIP 229 (322)
T ss_dssp EEEE-EEETTTTEEEEEEEEE-------SCCCEEEECTTS-SEEEEE--E--G--GGTEEEEEESSSTTTTCEEEEEECS
T ss_pred ceEE-EEeCCCCEEEEeccCC-------ccCcceEECCCC-CEEEEE--e--C--CCCeEEEEECCCCcCCccceEEeCC
Confidence 3467 7788777655432210 112245555432 222222 1 0 134677777764 3444433222
Q ss_pred cceecCCcceEE--CCcEEEEEeeCCCC-----CCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEee
Q 017748 194 YFWVTGTCSVFV--NGALHWTAALNQDA-----DRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKF 266 (366)
Q Consensus 194 ~~~~~~~~~v~~--~G~lYw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~ 266 (366)
. ..++.+ +|.+ |++...... .....|..||...+....+..|.... ......++.-+|+||+....
T Consensus 230 g-----P~gi~~d~~G~l-~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~ 302 (322)
T 2fp8_A 230 N-----PGNIKRNADGHF-WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF 302 (322)
T ss_dssp S-----EEEEEECTTSCE-EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS
T ss_pred C-----CCCeEECCCCCE-EEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC
Confidence 1 223444 4775 454432000 00137999999877777777775421 01122334468999987765
Q ss_pred cCCCCCCcEEEEEecc
Q 017748 267 DDDDDDRPWDLWVMKE 282 (366)
Q Consensus 267 ~~~~~~~~l~iW~l~~ 282 (366)
.. .+.+..++.
T Consensus 303 ~~-----~i~~~~~~~ 313 (322)
T 2fp8_A 303 HG-----SVGILVYDK 313 (322)
T ss_dssp CS-----EEEEEEC--
T ss_pred CC-----ceEEEeccc
Confidence 44 666666554
No 198
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=60.82 E-value=77 Score=26.89 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=36.7
Q ss_pred EEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc-eeeEEEEec--CCcEEEEEeeCCeEEEEe
Q 017748 252 LLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG-NVKPLVYSR--SEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 252 ~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~--~g~~i~~~~~~~~~~~yd 328 (366)
.+....+.+.+.+..+. .+.||.... ..|............ ....+++.. ++..|.-...++.+..||
T Consensus 255 ~v~~s~~~~l~s~~~dg-----~v~iw~~~~----~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 255 NVAWGFNGLIASVGADG-----VLAVYEEVD----GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEECTTSCEEEEETTS-----CEEEEEEET----TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred EEEEcCCCEEEEEeCCC-----EEEEEEcCC----CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 33334455444444444 899999875 457665544221111 133445555 343444456677799999
Q ss_pred CCCC
Q 017748 329 LERH 332 (366)
Q Consensus 329 ~~t~ 332 (366)
+++.
T Consensus 326 ~~~~ 329 (330)
T 2hes_X 326 LEKA 329 (330)
T ss_dssp C---
T ss_pred eccC
Confidence 8753
No 199
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=59.55 E-value=74 Score=26.29 Aligned_cols=147 Identities=13% Similarity=0.064 Sum_probs=70.1
Q ss_pred eeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC
Q 017748 105 SCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN 184 (366)
Q Consensus 105 s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~ 184 (366)
|.+|+|.... +..+. |||..|++...+-....+ ......+.+.+.. .+-+.+ . ....+.+++.+++
T Consensus 34 S~~~~lAvg~-D~tV~-iWd~~tg~~~~~~~~~~~----~~~V~~v~~~~~~-~~l~sg-s------~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 34 SSGNVLAVAL-DNSVY-LWSASSGDILQLLQMEQP----GEYISSVAWIKEG-NYLAVG-T------SSAEVQLWDVQQQ 99 (318)
T ss_dssp CTTSEEEEEE-TTEEE-EEETTTCCEEEEEECCST----TCCEEEEEECTTS-SEEEEE-E------TTSEEEEEETTTT
T ss_pred CCCCEEEEEe-CCEEE-EEECCCCCEEEEEEecCC----CCeEEEEEECCCC-CEEEEE-E------CCCcEEEeecCCc
Confidence 4566665443 45688 999999987654332221 1234456666643 333322 1 1446788888776
Q ss_pred cEEE-ccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-ECCeEEE
Q 017748 185 SWRR-IQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LGGCLCL 262 (366)
Q Consensus 185 ~W~~-~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~g~L~l 262 (366)
.-.. ...-. ........++.+-..+... ..+...+..+.......+.... .....+.. .+|++.+
T Consensus 100 ~~~~~~~~h~----~~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 166 (318)
T 4ggc_A 100 KRLRNMTSHS----ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHS---QEVCGLRWAPDGRHLA 166 (318)
T ss_dssp EEEEEEECCS----SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCS---SCEEEEEECTTSSEEE
T ss_pred eeEEEecCcc----ceEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcCcc---CceEEEEEcCCCCEEE
Confidence 4321 11100 0011223334433333222 2555666655433322222111 11222222 2466655
Q ss_pred EEeecCCCCCCcEEEEEeccC
Q 017748 263 LCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 263 ~~~~~~~~~~~~l~iW~l~~~ 283 (366)
....+. .+.+|-+...
T Consensus 167 s~~~d~-----~i~iwd~~~~ 182 (318)
T 4ggc_A 167 SGGNDN-----LVNVWPSAPG 182 (318)
T ss_dssp EEETTS-----CEEEEESSCB
T ss_pred EEecCc-----ceeEEECCCC
Confidence 555444 8999988653
No 200
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=59.33 E-value=78 Score=26.47 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=50.5
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
.+..+|+....-......... .....+... .. .+.+.+..+. .+.+|-++.. ..+..+....
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~------~~~~~~~~h~- 215 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHS---EWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANC------KLKTNHIGHT- 215 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCS---SCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTT------EEEEEECCCS-
T ss_pred eEEEEEeCCCceEEEEecccc---CcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCC------ceeeEecCCC-
Confidence 577788776554444333221 111122221 22 3334343333 7899977652 2223332111
Q ss_pred ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 301 GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
+...-+++.++|..++....++.+..||+++.+....
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 1134455667775555566677788899888775443
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=59.24 E-value=79 Score=26.49 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=93.2
Q ss_pred eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR 188 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~ 188 (366)
|+........++ .++| +++...+..+. ....++.+|+.. . ++.... ....+..|+.. ++.+.
T Consensus 59 l~~~d~~~~~i~-~~~~-~g~~~~~~~~~-------~~~~gl~~d~dG-~--l~v~~~-----~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 59 LVWSDLVGRRVL-GWRE-DGTVDVLLDAT-------AFTNGNAVDAQQ-R--LVHCEH-----GRRAITRSDAD-GQAHL 120 (305)
T ss_dssp EEEEETTTTEEE-EEET-TSCEEEEEESC-------SCEEEEEECTTS-C--EEEEET-----TTTEEEEECTT-SCEEE
T ss_pred EEEEECCCCEEE-EEeC-CCCEEEEeCCC-------CccceeeECCCC-C--EEEEEC-----CCCEEEEECCC-CCEEE
Confidence 444444556677 8888 56554443221 124467777643 2 322210 12356666664 55554
Q ss_pred ccCCCccee-cCCcceEE--CCcEEEEE----eeC-------CCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEE
Q 017748 189 IQDFPYFWV-TGTCSVFV--NGALHWTA----ALN-------QDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLE 254 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~v~~--~G~lYw~~----~~~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~ 254 (366)
+........ .....+.+ +|.+|+.. ... ........|..+|++++++..+. ... ..-.++
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~---~p~gl~ 194 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD---HPNGLA 194 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES---SEEEEE
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC---CCcceE
Confidence 432111111 11112333 57777631 100 00011247999999888776653 110 111233
Q ss_pred EE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 255 AL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 255 ~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.. +|+ ||++...........+.+|.++. . .......+.....+...-+.+..+| .|++.. .+.+..||++.+
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~--~l~~~~~~~~~~~~~pdgi~~d~~G-~lwv~~-~~gv~~~~~~g~ 268 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRD--G--ALHDRRHFASVPDGLPDGFCVDRGG-WLWSSS-GTGVCVFDSDGQ 268 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEET--T--EEEEEEEEECCSSSCCCSEEECTTS-CEEECC-SSEEEEECTTSC
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecC--C--CccCCeEEEECCCCCCCeEEECCCC-CEEEec-CCcEEEECCCCC
Confidence 33 454 66665432100011444444443 1 1222222211111112224555666 666665 446999999888
Q ss_pred eEEEeeeec
Q 017748 333 RVRSIVEID 341 (366)
Q Consensus 333 ~~~~v~~~~ 341 (366)
....+ .++
T Consensus 269 ~~~~~-~~~ 276 (305)
T 3dr2_A 269 LLGHI-PTP 276 (305)
T ss_dssp EEEEE-ECS
T ss_pred EEEEE-ECC
Confidence 77777 554
No 202
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=59.12 E-value=1.1e+02 Score=28.32 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+++++......... ++|..|++...|...+. . .+.++|. +++-+........ ...+.+++..++.+
T Consensus 122 ~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~------~~~~spD-G~~la~~~~~~~~---~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 122 EAVVFTGATEDRVA-LYALDGGGLRELARLPG---F------GFVSDIR-GDLIAGLGFFGGG---RVSLFTSNLSSGGL 187 (582)
T ss_dssp SCEEEEEECSSCEE-EEEEETTEEEEEEEESS---C------EEEEEEE-TTEEEEEEEEETT---EEEEEEEETTTCCC
T ss_pred CeEEEEecCCCCce-EEEccCCcEEEeecCCC---c------eEEECCC-CCEEEEEEEcCCC---CeEEEEEcCCCCCc
Q ss_pred EEccCCCccee-cCCcceEECCcEEEEEeeCCCCCCCc--EEEEEECCCceeeeeCCCCccCCCCceEEE--------EE
Q 017748 187 RRIQDFPYFWV-TGTCSVFVNGALHWTAALNQDADRND--IIIAFDLKSEEFYQVPLPPIVGIEGYYILL--------EA 255 (366)
Q Consensus 187 ~~~~~~~~~~~-~~~~~v~~~G~lYw~~~~~~~~~~~~--~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l--------~~ 255 (366)
+.+..-..... ..-++ ||...+..... . .|..+|+++.+...+.-.... ..... ..
T Consensus 188 ~~l~~~~~~~~~~~~Sp---DG~~l~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISP---GMKVTAGLETA------REARLVTVDPRDGSVEDLELPSKD----FSSYRPTAITWLGYL 254 (582)
T ss_dssp EEECCSSCEEEEEEECT---TSCEEEEEECS------SCEEEEEECTTTCCEEECCCSCSH----HHHHCCSEEEEEEEC
T ss_pred eEeecCCCccccceECC---CCCEEEEccCC------CeeEEEEEcCCCCcEEEccCCCcC----hhhhhhccccceeEc
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCe---EEEEeCCCC
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGD---LCWYDLERH 332 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~---~~~yd~~t~ 332 (366)
-+|++++....+. ...||.+ ++..+ ..... ..-+.+. +|..++....+.. ++.+|.++
T Consensus 255 pdg~~~~~~~~~g-----~~~l~~~------g~~~~----~~~~~--v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~- 315 (582)
T 3o4h_A 255 PDGRLAVVARREG-----RSAVFID------GERVE----APQGN--HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE- 315 (582)
T ss_dssp TTSCEEEEEEETT-----EEEEEET------TEEEC----CCSSE--EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-
T ss_pred CCCcEEEEEEcCC-----cEEEEEE------CCeec----cCCCc--eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+.+.+
T Consensus 316 ~~~~l 320 (582)
T 3o4h_A 316 PLLEG 320 (582)
T ss_dssp EEECC
T ss_pred ceEEE
No 203
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=58.90 E-value=32 Score=29.02 Aligned_cols=48 Identities=8% Similarity=0.186 Sum_probs=24.3
Q ss_pred EEEEEEec-CCcEEEccCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCc
Q 017748 175 EVAVFSLR-VNSWRRIQDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSE 233 (366)
Q Consensus 175 ~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~ 233 (366)
.+..|+.. ...|+.....+ .....+.- +|.+|. +... ..+.+||...+
T Consensus 118 ~l~~~d~~g~~~~~~~~~~~----~~~~~~~~~~g~l~v-gt~~------~~l~~~d~~g~ 167 (330)
T 3hxj_A 118 HLYAINTDGTEKWRFKTKKA----IYATPIVSEDGTIYV-GSND------NYLYAINPDGT 167 (330)
T ss_dssp EEEEECTTSCEEEEEECSSC----CCSCCEECTTSCEEE-ECTT------SEEEEECTTSC
T ss_pred EEEEEcCCCCEEEEEcCCCc----eeeeeEEcCCCEEEE-EcCC------CEEEEECCCCC
Confidence 45666665 34566432211 11222333 566554 4332 27999999833
No 204
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=58.41 E-value=1.1e+02 Score=27.69 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=60.0
Q ss_pred CcceEEC-----CcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCC
Q 017748 200 TCSVFVN-----GALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDR 273 (366)
Q Consensus 200 ~~~v~~~-----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~ 273 (366)
..++.++ |.|||.... ..|..+|+++.+...+..+.. ....++.. +|.||++...... .
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-------~~I~~id~~~g~v~~~~~~~~-----~P~giavd~dG~lyVad~~~~~--~- 205 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-------DAFRHVDFVNQYVDIKTTNIG-----QCADVNFTLNGDMVVVDDQSSD--T- 205 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-------SCEEEEETTTTEEEEECCCCS-----CEEEEEECTTCCEEEEECCSCT--T-
T ss_pred CceEEEccccCCCEEEEEeCC-------CCEEEEECCCCEEEEeecCCC-----CccEEEECCCCCEEEEcCCCCc--c-
Confidence 3467776 889887654 269999998888876633221 12223332 5678777653211 0
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
.-.+..+...+ .|.....+.. +....-+++..+++.|++... .++++.||+++++.
T Consensus 206 ~~gv~~~~~~~---~~~~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 206 NTGIYLFTRAS---GFTERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp SEEEEEECGGG---TTCCEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred cceEEEEECCC---Ceeccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 22333333321 1321122221 101222455553337777653 34688888887766
No 205
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=58.34 E-value=1.3e+02 Score=28.70 Aligned_cols=191 Identities=11% Similarity=0.044 Sum_probs=98.0
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCC-cEEEccCCCc-
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVN-SWRRIQDFPY- 194 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~-~W~~~~~~~~- 194 (366)
..++ ++|..+++...+...... ......+.+.|.. ++-++.. .........+.+++..++ ..+.+.....
T Consensus 235 ~~l~-~~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg-~~l~~~~--~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVG-IYHLATGKTVYLQTGEPK----EKFLTNLSWSPDE-NILYVAE--VNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEE-EEETTTTEEEECCCCSCT----TCEEEEEEECTTS-SEEEEEE--ECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEE-EEECCCCceEeeccCCCC----ceeEeeEEEECCC-CEEEEEE--eCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 4678 999999887666432111 1233445555542 3322222 122234567888888887 6765431110
Q ss_pred cee-cCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEE-EEEE-CC-eEEEEEeec
Q 017748 195 FWV-TGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYIL-LEAL-GG-CLCLLCKFD 267 (366)
Q Consensus 195 ~~~-~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~-l~~~-~g-~L~l~~~~~ 267 (366)
... ......+. +|.+.+.+..+. ...|..+|...+....+..... .... +... +| .|++....+
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~-----~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEW-----EVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSS-----CEEEEEEECTTSSEEEEEESSS
T ss_pred CeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCe-----EEEeeeEEcCCCCEEEEEecCC
Confidence 000 01112222 788766654331 2478888877666655532211 1112 2333 34 455544432
Q ss_pred CCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----CeEEEEeCCCCeE
Q 017748 268 DDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GDLCWYDLERHRV 334 (366)
Q Consensus 268 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~~~~yd~~t~~~ 334 (366)
. +....||.++..+ ... ..+..... ..-..+..+|+.+++...+ ..++.+|+++++.
T Consensus 378 ~---~~~~~l~~~d~~~--~~~---~~l~~~~~--~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~ 438 (706)
T 2z3z_A 378 S---PLERHFYCIDIKG--GKT---KDLTPESG--MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH 438 (706)
T ss_dssp C---TTCBEEEEEETTC--CCC---EESCCSSS--EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred C---CceEEEEEEEcCC--CCc---eeccCCCc--eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence 2 1247888887532 222 22322221 4456677888777766443 3499999999873
No 206
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=57.95 E-value=1.4e+02 Score=29.12 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=102.3
Q ss_pred EeeeceeEEeecCCccEEEEEeccccceeecCCcCC---CCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEE
Q 017748 103 IGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYR---DLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVF 179 (366)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~---~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vy 179 (366)
....+|-+.+......++ .+||.++++........ ... ......+..|+.. . +.+.. ...+.+|
T Consensus 221 ~~d~~g~lwigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~i~~d~~g-~---lWigt------~~Gl~~~ 287 (795)
T 4a2l_A 221 LQQSPTRIWVATEGAGLF-LINPKTKEIKNYLHSPSNPKSIS--SNYIRSLAMDSQN-R---LWIGT------FNDLNIY 287 (795)
T ss_dssp EEEETTEEEEEEBSSCEE-EEETTTTEEEEECCCTTCTTSCS--CSBEEEEEECTTS-C---EEEEE------SSCEEEE
T ss_pred EEcCCCCEEEEECCCCeE-EEeCCCCeEEEeecCCCCccccC--CCeEEEEEEcCCC-C---EEEEe------CChhheE
Confidence 333456665554444588 89999988776653321 111 1223344444321 1 22222 1257788
Q ss_pred EecCCcEEEccCCCc---cee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCC-CC--ccCCCCce
Q 017748 180 SLRVNSWRRIQDFPY---FWV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPL-PP--IVGIEGYY 250 (366)
Q Consensus 180 ss~t~~W~~~~~~~~---~~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~--~~~~~~~~ 250 (366)
+..++.++.....+. ... ..-.+++. +|. .|++... ..|..+|..+..|..+.. +. .. .....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~~~~~~l-~~~~V 359 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF------GGLNYYHPIRNRFKNIRNIPYKNSL-SDNVV 359 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS------SCEEEECGGGGSSEEECCCTTSSSC-SCSSE
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC------CCeEEeCCCcccceEEcCCCCCCCC-CCCee
Confidence 888888877643221 111 11123333 244 4666554 259999999888877633 21 11 11122
Q ss_pred EEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec--cC-CCceeeEEEE--ecCCcE-EEEEeeCCe
Q 017748 251 ILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL--NV-GGGNVKPLVY--SRSEDK-VLLHAVRGD 323 (366)
Q Consensus 251 ~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~--~~-~~~~~~~~~~--~~~g~~-i~~~~~~~~ 323 (366)
..+.+- +|.|.+.+... .+..|..+. ..+.....-. .. .+....+.++ ..+| . |.+...++.
T Consensus 360 ~~i~~d~~g~lWiGt~~~------Gl~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~G 428 (795)
T 4a2l_A 360 SCIVEDKDKNLWIGTNDG------GLNLYNPIT----QRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGG 428 (795)
T ss_dssp EEEEECTTSCEEEEESSS------CEEEECTTT----CCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTE
T ss_pred EEEEECCCCCEEEEECCC------CeEEEcCCC----CcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCc
Confidence 334433 57777754422 344432221 2343321100 00 0101223333 3445 6 777777667
Q ss_pred EEEEeCCCCeEEEe
Q 017748 324 LCWYDLERHRVRSI 337 (366)
Q Consensus 324 ~~~yd~~t~~~~~v 337 (366)
++.||+++++++.+
T Consensus 429 l~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 429 LSILHRNSGQVENF 442 (795)
T ss_dssp EEEEETTTCCEEEE
T ss_pred eeEEeCCCCcEEEe
Confidence 99999999988776
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=57.47 E-value=83 Score=26.18 Aligned_cols=145 Identities=6% Similarity=0.048 Sum_probs=72.2
Q ss_pred ccEEEEEEecCC--cEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVN--SWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~ 250 (366)
...+.+++.+++ .|+.-..-... .....+.-+|.++. ... ..|..||...+.-..+..|... ..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~--~~~~~~~pdG~ilv-s~~-------~~V~~~d~~G~~~W~~~~~~~~----~~ 79 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWE--CNSVAATKAGEILF-SYS-------KGAKMITRDGRELWNIAAPAGC----EM 79 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCC--CCEEEECTTSCEEE-ECB-------SEEEEECTTSCEEEEEECCTTC----EE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCC--CcCeEECCCCCEEE-eCC-------CCEEEECCCCCEEEEEcCCCCc----cc
Confidence 456677787665 47753321000 01112223787777 332 2799999954333444555322 11
Q ss_pred EEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC---CCceeeEEEEecCCcEEEEEeeCCeEEE
Q 017748 251 ILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV---GGGNVKPLVYSRSEDKVLLHAVRGDLCW 326 (366)
Q Consensus 251 ~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 326 (366)
..... -+|+++++.... .-.+++++..+ +..|.. .+... .....+-..+..+|+.++....++++.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~------~~~v~~vd~~G-k~l~~~--~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 80 QTARILPDGNALVAWCGH------PSTILEVNMKG-EVLSKT--EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp EEEEECTTSCEEEEEEST------TEEEEEECTTS-CEEEEE--EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred cccEECCCCCEEEEecCC------CCEEEEEeCCC-CEEEEE--eccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 12222 367777665531 23566666532 233443 22211 0001222345567755554555678999
Q ss_pred EeCCCCeEEEeeeec
Q 017748 327 YDLERHRVRSIVEID 341 (366)
Q Consensus 327 yd~~t~~~~~v~~~~ 341 (366)
||++ ++..+-++..
T Consensus 151 ~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS 164 (276)
T ss_dssp ECTT-SCEEEEEECS
T ss_pred ECCC-CCEEEEEECC
Confidence 9999 6655543554
No 208
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=57.36 E-value=37 Score=30.08 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=32.9
Q ss_pred eEEEEEeccCCCceeeEEEEecCCcEEEEEee--CCeEEEEeCCCCeEEEeeeec
Q 017748 289 WTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV--RGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~--~~~~~~yd~~t~~~~~v~~~~ 341 (366)
...+.+|+.... ..-+.+..+|..+++... ++.+.++|++|++..+-....
T Consensus 304 ~~vv~~i~vg~~--p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 304 GQTSGPISNGHD--SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CCEEECCEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CeEEEEEECCCC--cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 555666664321 333556677766777665 577999999999876542443
No 209
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=57.32 E-value=96 Score=26.87 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=89.1
Q ss_pred CccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcc
Q 017748 116 RRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
+..+. |||+.+++......... ....+.|.|.. .+ ++... ...+.++...++.-.........
T Consensus 156 d~~i~-iwd~~~~~~~~~~~~~~-------~V~~v~fspdg-~~--l~s~s------~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 156 PAIMR-IIDPSDLTEKFEIETRG-------EVKDLHFSTDG-KV--VAYIT------GSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp SCEEE-EEETTTTEEEEEEECSS-------CCCEEEECTTS-SE--EEEEC------SSCEEEEETTTCCEEEEECCCCT
T ss_pred CCEEE-EeECCCCcEEEEeCCCC-------ceEEEEEccCC-ce--EEecc------ceeEEEEEeccCcceeeeecCCC
Confidence 45678 99999988765433211 12245555532 22 22221 22355666655543321111000
Q ss_pred eecCCc-ceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee---CCCCccCCCCceEEEEEE-CCeEEEEEeecCCC
Q 017748 196 WVTGTC-SVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV---PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDD 270 (366)
Q Consensus 196 ~~~~~~-~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~ 270 (366)
...... ...-+|.....+..... ....+..+|+........ .+.... .....+... +|++.+.+..+.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~-- 291 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKG--KGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDN-- 291 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSS--CCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTS--
T ss_pred CCCEEEEEEcCCCCEEEEEecCCc--ceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCC--
Confidence 000000 11134555444433321 112466666665544332 122211 112233333 567666665554
Q ss_pred CCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 271 DDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 271 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
.+.||-++. ...+.++.........-+++.++|..|+-...|+.+-++|+.++
T Consensus 292 ---~V~iwd~~~------~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 292 ---SIALVKLKD------LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---CEEEEETTT------TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---EEEEEECCC------CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 899998765 23444443221112556778888856666677888999998643
No 210
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=57.12 E-value=98 Score=26.95 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred cEEEEEECCCcee--eeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE----EEEec
Q 017748 223 DIIIAFDLKSEEF--YQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK----LATLL 296 (366)
Q Consensus 223 ~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~----~~~i~ 296 (366)
..|..+|+.+.+- ..+...... ....+...+|++.+....+. .+.+|.+........-.. .....
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~ 383 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGT----PINNVYFAAGALFVSSGFDT-----SIKLDIISDPESERPAIEFETPTFLVS 383 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTS----CEEEEEEETTEEEEEETTTE-----EEEEEEECCTTCCSCEECTTSCEEECC
T ss_pred CeEEEEEcCCCcCchhhhhccCCC----CceEEEeCCCCEEEEecCCc-----cEEEEeccCCCCCccceeccCccEEcc
Confidence 3799999987542 233221111 22334445777666555444 899999987422111000 00111
Q ss_pred cCCCceeeEEEEecCCc---EEEEEeeCCeEEEEeCCC
Q 017748 297 NVGGGNVKPLVYSRSED---KVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 297 ~~~~~~~~~~~~~~~g~---~i~~~~~~~~~~~yd~~t 331 (366)
.. +...-+++..++. .++....++.+..|+++.
T Consensus 384 ~~--~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 384 ND--DAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SS--CCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CC--cceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 11 1144456666664 588888777899998865
No 211
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=57.12 E-value=82 Score=26.01 Aligned_cols=136 Identities=8% Similarity=-0.071 Sum_probs=67.6
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCc
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGY 249 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~ 249 (366)
...+.+++..++.-...-....+. ..-.++.. +|.....+..+ ..|..+|+++++.... ..... .
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~-~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~~h~~-----~ 111 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHSA-----R 111 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSS-----C
T ss_pred CCEEEEEECCCCCEEEEEEecCCC-CeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEecCccc-----e
Confidence 446899999887654321111100 00012222 35544433333 3788999998765333 22221 1
Q ss_pred eEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEec-cCCCceeeEEEEecCCcEEEEEeeCCeEEEEe
Q 017748 250 YILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLL-NVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 250 ~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd 328 (366)
.. ....++.+.+...... .+.+|..... ...+..+. ... ......+..++..++....++.+..||
T Consensus 112 ~~-~~~~~~~~l~s~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 112 VG-SLSWNSYILSSGSRSG-----HIHHHDVRVA-----EHHVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp EE-EEEEETTEEEEEETTS-----EEEEEETTSS-----SCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EE-EeecCCCEEEEEecCC-----ceEeeecCCC-----ceeEEEEcCccC--ceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 22 2233455444444333 5666655442 22222222 111 144455666665566566677799999
Q ss_pred CCCCe
Q 017748 329 LERHR 333 (366)
Q Consensus 329 ~~t~~ 333 (366)
+++++
T Consensus 179 ~~~~~ 183 (318)
T 4ggc_A 179 SAPGE 183 (318)
T ss_dssp SSCBT
T ss_pred CCCCc
Confidence 98765
No 212
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=57.02 E-value=1e+02 Score=27.12 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=53.7
Q ss_pred cEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..|..+|+.+.+. ..+..|... .....+... +|++.+.+..+. .+.+|-+... ..+..+.....
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~------~~~~~~~~~~~ 257 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRH---GAVSSICIDEECCVLILGTTRG-----IIDIWDIRFN------VLIRSWSFGDH 257 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGG---CCEEEEEECTTSCEEEEEETTS-----CEEEEETTTT------EEEEEEBCTTC
T ss_pred CeEEEEeCCCCeeeEEEccCCCC---CceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCc------cEEEEEecCCC
Confidence 3899999987655 333443221 122233333 466666666554 8999988751 22333332221
Q ss_pred ceeeEEEE--e----cCCcEEEEE-eeCCeEEEEeCCCCeEEEe
Q 017748 301 GNVKPLVY--S----RSEDKVLLH-AVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 301 ~~~~~~~~--~----~~g~~i~~~-~~~~~~~~yd~~t~~~~~v 337 (366)
..+.++ . .++ .+++. ..++.+..||+++++....
T Consensus 258 --~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 258 --APITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp --EEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEE
T ss_pred --CceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 222222 2 234 44444 4456699999999886655
No 213
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=56.68 E-value=85 Score=26.07 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=47.0
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC------ceeeEEEEecC---CcEEEEEeeCCeEEEEe
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG------GNVKPLVYSRS---EDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~------~~~~~~~~~~~---g~~i~~~~~~~~~~~yd 328 (366)
|.+.+.+..+. .+.+|-+........|.....+..... .....+.+..+ ++.++....++.++.++
T Consensus 124 ~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 198 (351)
T 3f3f_A 124 GLKLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR 198 (351)
T ss_dssp CSEEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEE
T ss_pred CcEEEEecCCC-----cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEc
Confidence 55655555444 899999887654455765544433221 11233444443 54566666666688888
Q ss_pred CCCCeEEEeeeecC
Q 017748 329 LERHRVRSIVEIDD 342 (366)
Q Consensus 329 ~~t~~~~~v~~~~~ 342 (366)
..+++.+.+..+.+
T Consensus 199 ~~~~~~~~~~~~~~ 212 (351)
T 3f3f_A 199 GKDGKLHVAAKLPG 212 (351)
T ss_dssp CTTSCEEEEEECCC
T ss_pred cCCCceeeeeecCC
Confidence 88888766544444
No 214
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=55.55 E-value=1.2e+02 Score=27.32 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=63.8
Q ss_pred ceEEC----CcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcE
Q 017748 202 SVFVN----GALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPW 275 (366)
Q Consensus 202 ~v~~~----G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l 275 (366)
++.++ |.||+.... ..|..||++++....+.-+.. ....++.. +|+ |+++...... ....
T Consensus 141 ~lavdp~~~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~~~~-----~P~~ia~d~~G~~lyvad~~~~~--~~~~ 206 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQ-------HPTRLIDFEKEYVSTVYSGLS-----KVRTICWTHEADSMIITNDQNNN--DRPN 206 (430)
T ss_dssp EEEEETTEEEEEEEEEBT-------EEEEEEETTTTEEEEEECCCS-----CEEEEEECTTSSEEEEEECCSCT--TSEE
T ss_pred EEEECCCCCCeEEEEeCC-------CcEEEEECCCCEEEEEecCCC-----CcceEEEeCCCCEEEEEeCCCCc--ccce
Confidence 55554 788877653 379999999987766522111 22234443 455 7777664321 1123
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeEEEe
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRVRSI 337 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~~~v 337 (366)
.+|...+ ..|.....+.... ...-+++..+++.|++... ..+++.||++++....+
T Consensus 207 v~~~~~~----g~~~~~~~l~~~~--~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 207 NYILTRE----SGFKVITELTKGQ--NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp EEEEEGG----GTSCSEEEEEECS--SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCC----CceeeeeeeccCC--CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 3444433 2243222332211 1334556663447887753 45799999998887444
No 215
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=55.07 E-value=1.1e+02 Score=26.76 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=95.4
Q ss_pred ce-eEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NG-LLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~G-ll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+| +++....+..+. |||..+++....-.. + ......+.+.|.. .+ ++... ....+.+++.+++.
T Consensus 134 dg~~l~s~~~d~~i~-iwd~~~~~~~~~~~~--h----~~~v~~~~~~p~~-~~-l~s~s------~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDRLIR-IWDIENRKIVMILQG--H----EQDIYSLDYFPSG-DK-LVSGS------GDRTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTSCEE-EEETTTTEEEEEECC--C----SSCEEEEEECTTS-SE-EEEEE------TTSEEEEEETTTTE
T ss_pred CCCEEEEEcCCCeEE-EEECCCCcEEEEEcc--C----CCCEEEEEEcCCC-CE-EEEec------CCCcEEEEECCCCe
Confidence 44 334444566788 999988775432111 1 1234456666643 22 33222 14568888887765
Q ss_pred EEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceee-eeCCCCcc--CCCCceEEEEEE-CC
Q 017748 186 WRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFY-QVPLPPIV--GIEGYYILLEAL-GG 258 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~--~~~~~~~~l~~~-~g 258 (366)
-...-..... ...+.+ +|.+...+..+ ..|..+|+++.... .+..+... .+......+... +|
T Consensus 199 ~~~~~~~~~~----v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 199 CSLTLSIEDG----VTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp EEEEEECSSC----EEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred eEEEEEcCCC----cEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 4322111111 011221 45554444433 36888999876543 22222111 111122333333 46
Q ss_pred eEEEEEeecCCCCCCcEEEEEeccCCCCCc------eEEEEEe-ccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCC
Q 017748 259 CLCLLCKFDDDDDDRPWDLWVMKEYGVNDS------WTKLATL-LNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 259 ~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~------W~~~~~i-~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t 331 (366)
++.+.+..+. .+.+|-++....... ......+ .... ...-+++..++..|+-...++.+..||+++
T Consensus 269 ~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 269 QSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp SEEEEEETTS-----EEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCC-----EEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 6655555444 899999876321100 1111111 1111 133455666665566666777899999999
Q ss_pred CeEEE
Q 017748 332 HRVRS 336 (366)
Q Consensus 332 ~~~~~ 336 (366)
++...
T Consensus 342 ~~~~~ 346 (393)
T 1erj_A 342 GNPLL 346 (393)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 87543
No 216
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=54.67 E-value=2e+02 Score=29.72 Aligned_cols=187 Identities=11% Similarity=0.087 Sum_probs=93.7
Q ss_pred eEEeecCCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 109 LLALEDSRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
++.....+..+. |||..|++... +..- .....++.+.|. +.+-+.+ . ....+.+++..++.-.
T Consensus 629 ~l~s~~~d~~i~-vw~~~~~~~~~~~~~h-------~~~v~~~~~s~~-~~~l~s~-~------~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 629 RIASCGADKTLQ-VFKAETGEKLLDIKAH-------EDEVLCCAFSSD-DSYIATC-S------ADKKVKIWDSATGKLV 692 (1249)
T ss_dssp EEEEEETTSCEE-EEETTTCCEEEEECCC-------SSCEEEEEECTT-SSEEEEE-E------TTSEEEEEETTTCCEE
T ss_pred EEEEEeCCCeEE-EEECCCCCEEEEeccC-------CCCEEEEEEecC-CCEEEEE-e------CCCeEEEEECCCCceE
Confidence 344444556788 99999887543 3211 223455666664 2333322 1 1456889998876532
Q ss_pred E-ccCCCcceecCCcceEEC---CcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEE
Q 017748 188 R-IQDFPYFWVTGTCSVFVN---GALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 188 ~-~~~~~~~~~~~~~~v~~~---G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
. +...... -.++.+. +..+..+...+ ..|..+|+.+.+.... .-... ....+... +|+..
T Consensus 693 ~~~~~~~~~----v~~~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 693 HTYDEHSEQ----VNCCHFTNKSNHLLLATGSND-----FFLKLWDLNQKECRNTMFGHTN-----SVNHCRFSPDDELL 758 (1249)
T ss_dssp EEEECCSSC----EEEEEECSSSSCCEEEEEETT-----SCEEEEETTSSSEEEEECCCSS-----CEEEEEECSSTTEE
T ss_pred EEEcCCCCc----EEEEEEecCCCceEEEEEeCC-----CeEEEEECCCcchhheecCCCC-----CEEEEEEecCCCEE
Confidence 2 1111111 0112221 12222232222 3688999987765332 22111 12223333 46665
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC------------ceeeEEEEecCCcEEEEEeeCCeEEEEeC
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG------------GNVKPLVYSRSEDKVLLHAVRGDLCWYDL 329 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~------------~~~~~~~~~~~g~~i~~~~~~~~~~~yd~ 329 (366)
+.+..++ .+.+|-+.... ....+..... ....-+++..+|..++.. .++.+..||+
T Consensus 759 ~s~s~dg-----~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~~v~~~d~ 826 (1249)
T 3sfz_A 759 ASCSADG-----TLRLWDVRSAN------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDI 826 (1249)
T ss_dssp EEEESSS-----EEEEEEGGGTE------EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-ETTEEEEEET
T ss_pred EEEECCC-----eEEEEeCCCCc------ccceecccccccccCCccccccceEEEEEECCCCCEEEEE-cCCcEEEEEe
Confidence 5555554 89999887631 1112211110 012234456677455544 4667999999
Q ss_pred CCCeEEEe
Q 017748 330 ERHRVRSI 337 (366)
Q Consensus 330 ~t~~~~~v 337 (366)
.++.....
T Consensus 827 ~~~~~~~~ 834 (1249)
T 3sfz_A 827 HTSGLLAE 834 (1249)
T ss_dssp TTCCEEEE
T ss_pred cCCCceeE
Confidence 99887655
No 217
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=54.44 E-value=1.5e+02 Score=28.24 Aligned_cols=210 Identities=13% Similarity=0.019 Sum_probs=106.4
Q ss_pred eeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEec
Q 017748 104 GSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLR 182 (366)
Q Consensus 104 ~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~ 182 (366)
+..+|.|...+ ....++ ..++.......+-.... ....++++|...+. +... +. ....+++.++.
T Consensus 357 d~~~~~ly~sD~~~~~I~-r~~~~g~~~~~v~~~~~------~~p~GlAvD~~~~~--lY~t---D~--~~~~I~v~~~~ 422 (619)
T 3s94_A 357 DPVEGYIYWTDDEVRAIR-RSFIDGSGSQFVVTAQI------AHPDGIAVDWVARN--LYWT---DT--GTDRIEVTRLN 422 (619)
T ss_dssp ETTTTEEEEEETTTTEEE-EEETTSCSCEEEECSSC------SCCCEEEEETTTTE--EEEE---ET--TTTEEEEEETT
T ss_pred EcCCCeEEEEeCCCCeEE-EEEcCCCccEEEEECCC------CCcCceEEecccCc--EEEE---eC--CCCcEEEEeCC
Confidence 34467776665 455677 77877654433322211 13347888876442 2222 11 24567888876
Q ss_pred CCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--C
Q 017748 183 VNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--G 257 (366)
Q Consensus 183 t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~ 257 (366)
...-+.+..- . .....++.+ +|.+||...... ..|..+++.-..-..+. .... ...--|+.- +
T Consensus 423 G~~~~~l~~~--~-l~~P~~iavdp~~G~ly~tD~g~~-----~~I~r~~~dG~~~~~l~-~~~l---~~P~GlalD~~~ 490 (619)
T 3s94_A 423 GTMRKILISE--D-LEEPRAIVLDPMVGYMYWTDWGEI-----PKIERAALDGSDRVVLV-NTSL---GWPNGLALDYDE 490 (619)
T ss_dssp SCSCEEEECT--T-CCSEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEEEE-CSSC---SCEEEEEEETTT
T ss_pred CCeEEEEEEC--C-CCCeeeEEEEcCCCcEEEecCCCC-----CEEEEEccCCCccEEEE-eCCC---CCCeeeEEcccC
Confidence 5543433211 0 011234555 499999864331 37889988643322221 1111 111223333 6
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCC-eEEEEeCCCCeEEE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRG-DLCWYDLERHRVRS 336 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~-~~~~yd~~t~~~~~ 336 (366)
++||++..... . |+..+-.+... ..+....+ ..|.++.-.++.||+..... .+...|..++.-+.
T Consensus 491 ~~LY~aD~~~~-----~--I~~~~~dG~~~-----~~~~~~~l--~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~~~~ 556 (619)
T 3s94_A 491 GKIYWGDAKTD-----K--IEVMNTDGTGR-----RVLVEDKI--PHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV 556 (619)
T ss_dssp TEEEEEETTTT-----E--EEEEESSSCCC-----EEEEECCC--CSSCCEEEETTEEEEECTTSSCEEEEESSSCCEEE
T ss_pred CEEEEEECCCC-----E--EEEEecCCCce-----EEEeccCC--CCcEEEEEECCEEEEeecCCCeEEEEEcCCCceEE
Confidence 89999876443 3 44444333211 12211222 45655554455888876543 49999999985544
Q ss_pred eeeecCcccCeeeeeEEecC
Q 017748 337 IVEIDDKVRRCDMRTVCVNT 356 (366)
Q Consensus 337 v~~~~~~~~~~~~~~~y~~s 356 (366)
+ ..+ ....+....|.+.
T Consensus 557 ~--~~~-~~~~~~i~~~~~~ 573 (619)
T 3s94_A 557 I--IDQ-LPDLMGLKATNVH 573 (619)
T ss_dssp E--ECS-CCCEEEEEEEESS
T ss_pred E--ecC-CCCCceeeecccc
Confidence 3 222 3334445555443
No 218
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=54.35 E-value=93 Score=25.83 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=81.5
Q ss_pred CCccEEEEEeccccceee-cCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEE-ccCC
Q 017748 115 SRRNIMLLLNPLTKRHRV-LPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRR-IQDF 192 (366)
Q Consensus 115 ~~~~~~~V~NP~t~~~~~-LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~ 192 (366)
.+..+. +||..+++... ++.. ......+.+++.. .+- +... ....+.+|+.+++.-.. +...
T Consensus 127 ~d~~i~-iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l-~~~~------~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 127 FDESVR-IWDVKTGKCLKTLPAH-------SDPVSAVHFNRDG-SLI-VSSS------YDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp TTSCEE-EEETTTCCEEEEECCC-------SSCEEEEEECTTS-SEE-EEEE------TTSCEEEEETTTCCEEEEECCS
T ss_pred CCCcEE-EEECCCCEEEEEecCC-------CCcEEEEEEcCCC-CEE-EEEe------CCCcEEEEECCCCceeeEEecc
Confidence 445567 88877765432 2211 1123445555532 222 2211 13467888887765422 1100
Q ss_pred CcceecCCcceE--ECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEECCeEEEEEeecCC
Q 017748 193 PYFWVTGTCSVF--VNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEALGGCLCLLCKFDDD 269 (366)
Q Consensus 193 ~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~ 269 (366)
... ....+. -+|.....+..+ ..|..+|+.+.+.... ..+... ...........+|++.+.+..++
T Consensus 191 ~~~---~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg- 259 (312)
T 4ery_A 191 DNP---PVSFVKFSPNGKYILAATLD------NTLKLWDYSKGKCLKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDN- 259 (312)
T ss_dssp SCC---CEEEEEECTTSSEEEEEETT------TEEEEEETTTTEEEEEECSSCCS-SSCCCEEEECSSSCEEEECCTTS-
T ss_pred CCC---ceEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCC-
Confidence 000 000111 134444433333 3799999988765332 222221 00011122223455555554444
Q ss_pred CCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--eCCeEEEEeCC
Q 017748 270 DDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--VRGDLCWYDLE 330 (366)
Q Consensus 270 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~~~~~~~yd~~ 330 (366)
.+.+|-++... .+..+.... ....-+++++++..+.... .++.+..|+.+
T Consensus 260 ----~i~vwd~~~~~------~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 ----LVYIWNLQTKE------IVQKLQGHT-DVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----CEEEEETTTCC------EEEEECCCS-SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ----EEEEEECCCch------hhhhhhccC-CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 89999887621 233332211 1134456667774444443 35557777654
No 219
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=52.60 E-value=1e+02 Score=25.89 Aligned_cols=182 Identities=7% Similarity=0.042 Sum_probs=88.1
Q ss_pred eEEeecCCccEEEEEeccc-ccee--ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 109 LLALEDSRRNIMLLLNPLT-KRHR--VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t-~~~~--~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+++....+..+. |||..+ ++.. .+.. + ......+.+.+. +.+-+.+ . ....+.+|+..++.
T Consensus 56 ~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~---h----~~~v~~~~~~~~-~~~l~s~-~------~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 56 FLIAGSWANDVR-CWEVQDSGQTIPKAQQM---H----TGPVLDVCWSDD-GSKVFTA-S------CDKTAKMWDLSSNQ 119 (368)
T ss_dssp EEEEEETTSEEE-EEEECTTSCEEEEEEEE---C----SSCEEEEEECTT-SSEEEEE-E------TTSEEEEEETTTTE
T ss_pred EEEEECCCCcEE-EEEcCCCCceeEEEecc---c----cCCEEEEEECcC-CCEEEEE-c------CCCcEEEEEcCCCC
Confidence 344444556677 888876 3322 1211 1 123445666663 3333322 1 14578899988876
Q ss_pred EEEccCCCcceecCCcceEE----CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCccCCCCceEEEEEECCeE
Q 017748 186 WRRIQDFPYFWVTGTCSVFV----NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEALGGCL 260 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v~~----~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L 260 (366)
-......... -.++.+ +|.+...+..+ ..|..+|+.+.+. ..+..+.. ...+......+
T Consensus 120 ~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~ 183 (368)
T 3mmy_A 120 AIQIAQHDAP----VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMVLQLPER------CYCADVIYPMA 183 (368)
T ss_dssp EEEEEECSSC----EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEEEECSSC------EEEEEEETTEE
T ss_pred ceeeccccCc----eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEEEecCCC------ceEEEecCCee
Confidence 5443211111 112222 34444443333 3799999987653 33344332 22333344444
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCc----EEEEEeeCCeEEEEeCCCCe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSED----KVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~----~i~~~~~~~~~~~yd~~t~~ 333 (366)
++ ...+. .+.+|.++... ..+...... .. ......++..++. .++....++.+..||+++..
T Consensus 184 ~~-~~~~~-----~i~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 184 VV-ATAER-----GLIVYQLENQP--SEFRRIESP-LK--HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EE-EEGGG-----CEEEEECSSSC--EEEEECCCS-CS--SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred EE-EeCCC-----cEEEEEecccc--chhhhcccc-cc--CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 43 33343 78999887632 222221111 11 1133333332221 26666667778899988763
No 220
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=51.73 E-value=1.3e+02 Score=26.75 Aligned_cols=144 Identities=12% Similarity=-0.004 Sum_probs=74.3
Q ss_pred ccEEEEEEecCCcEEE--ccCCCcceecCCcceEE-CCcEEEEEeeCCCCCCCcEEEEEECCCcee-eeeCCCCcc----
Q 017748 173 YTEVAVFSLRVNSWRR--IQDFPYFWVTGTCSVFV-NGALHWTAALNQDADRNDIIIAFDLKSEEF-YQVPLPPIV---- 244 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~--~~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~---- 244 (366)
...+.+|+..++.-.. ...-... -.++.+ +|.+...+..+ ..|..+|+.+.+. ..+..+...
T Consensus 219 d~~i~vwd~~~~~~~~~~~~~h~~~----v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~ 288 (450)
T 2vdu_B 219 DEHIKISHYPQCFIVDKWLFGHKHF----VSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYL 288 (450)
T ss_dssp TSCEEEEEESCTTCEEEECCCCSSC----EEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGC
T ss_pred CCcEEEEECCCCceeeeeecCCCCc----eEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhh
Confidence 3468888887654322 1111100 112222 67666655543 3799999988654 223322100
Q ss_pred ----------------CCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE
Q 017748 245 ----------------GIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV 307 (366)
Q Consensus 245 ----------------~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 307 (366)
........+... +|+..++....+. .+.||.+.+. ....+..+..+..... ..-++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~----~i~iw~~~~~-~~~~l~~~~~~~~~~~--v~~~~ 361 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK----CIIILEMSEK-QKGDLALKQIITFPYN--VISLS 361 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS----EEEEEEECSS-STTCEEEEEEEECSSC--EEEEE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC----eEEEEEeccC-CCCceeeccEeccCCc--eEEEE
Confidence 000112233333 3565555552332 8999999221 1245677777765422 44455
Q ss_pred EecCCcEEEEEeeC-C---------eEEEEeCCCCeEE
Q 017748 308 YSRSEDKVLLHAVR-G---------DLCWYDLERHRVR 335 (366)
Q Consensus 308 ~~~~g~~i~~~~~~-~---------~~~~yd~~t~~~~ 335 (366)
+.++ .+++.... . .++.++.++++|+
T Consensus 362 ~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 362 AHND--EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EETT--EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred ecCC--cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 5553 45554322 1 6888899999986
No 221
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=50.91 E-value=2e+02 Score=28.73 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCcee
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNV 303 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 303 (366)
.|..+|..+.+.... ++... ....+.-..|+ +++....+. .+.||-++... .+..+.... ..
T Consensus 40 ~I~lw~~~~~~~~~~-~~~~~----~V~~l~fspg~-~L~S~s~D~----~v~lWd~~~~~------~~~~~~~~~--~V 101 (902)
T 2oaj_A 40 EVHIYGQQQVEVVIK-LEDRS----AIKEMRFVKGI-YLVVINAKD----TVYVLSLYSQK------VLTTVFVPG--KI 101 (902)
T ss_dssp EEEEECSTTCEEEEE-CSSCC----CEEEEEEETTT-EEEEEETTC----EEEEEETTTCS------EEEEEECSS--CE
T ss_pred EEEEEeCCCcEEEEE-cCCCC----CEEEEEEcCCC-EEEEEECcC----eEEEEECCCCc------EEEEEcCCC--CE
Confidence 677788776554322 22111 23344445577 444443333 89999887621 223333222 14
Q ss_pred eEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 304 KPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 304 ~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
.-+.+..+++.++....++.+..||+++++...
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 556667788777777778889999999998753
No 222
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=50.66 E-value=1.4e+02 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.4
Q ss_pred ceEECCcEEEEEeeCCCCCCCcEEEEEECCCce
Q 017748 202 SVFVNGALHWTAALNQDADRNDIIIAFDLKSEE 234 (366)
Q Consensus 202 ~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~ 234 (366)
.++.+|.+|...... .++++|.++.+
T Consensus 111 ~~~~~~~v~v~~~dg-------~l~alD~~tG~ 136 (571)
T 2ad6_A 111 LAYGAGQIVKKQANG-------HLLALDAKTGK 136 (571)
T ss_dssp CEEETTEEEEECTTS-------EEEEEETTTCC
T ss_pred cEEECCEEEEEeCCC-------EEEEEECCCCC
Confidence 566788888775433 79999998754
No 223
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=50.42 E-value=1.1e+02 Score=25.64 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=53.5
Q ss_pred EEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+.+.+.... .-.. .....+... +|++.+.+..+. .+.||-+... ..+..+.....
T Consensus 177 ~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd~~~~------~~~~~~~~~~~- 239 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFIGHN-----SNINTLTASPDGTLIASAGKDG-----EIMLWNLAAK------KAMYTLSAQDE- 239 (319)
T ss_dssp CEEEEETTTTEEEEEECCCC-----SCEEEEEECTTSSEEEEEETTC-----EEEEEETTTT------EEEEEEECCSC-
T ss_pred EEEEEECCcchhheeecCCC-----CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC------cEEEEecCCCc-
Confidence 688899987654332 2111 122233433 466666555554 8999988752 23344433222
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
..-+++.+++ ..+....+..+..|+++++...
T Consensus 240 -v~~~~~sp~~-~~la~~~~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 240 -VFSLAFSPNR-YWLAAATATGIKVFSLDPQYLV 271 (319)
T ss_dssp -EEEEEECSSS-SEEEEEETTEEEEEEETTEEEE
T ss_pred -EEEEEEcCCC-CEEEEEcCCCcEEEEeCcCeee
Confidence 4556777777 4555555556888888876543
No 224
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=49.34 E-value=1.2e+02 Score=25.61 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=55.9
Q ss_pred cEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..+..+|+++.+-... ..... ....+... +|++.+.+..+. .+.+|-+... ..+..+....
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~------~~~~~~~~h~- 206 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAIDG-----IINIFDIATG------KLLHTLEGHA- 206 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSS-----CEEEEEECTTSSEEEEEETTS-----CEEEEETTTT------EEEEEECCCS-
T ss_pred CcEEEEEcCCCceeEEecCCCc-----eEEEEEECCCCCEEEEEcCCC-----eEEEEECCCC------cEEEEEcccC-
Confidence 3788899887654322 22111 12233333 466666555554 8999987652 2334443211
Q ss_pred ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 301 GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
....-+++.+++..|+....++.+..||+++++...
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 114456677777555556667779999999887653
No 225
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=49.28 E-value=1.4e+02 Score=26.39 Aligned_cols=196 Identities=9% Similarity=0.073 Sum_probs=93.3
Q ss_pred eEEeecCCccEEEEEeccccce--eec-CCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 109 LLALEDSRRNIMLLLNPLTKRH--RVL-PTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 109 ll~~~~~~~~~~~V~NP~t~~~--~~L-P~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+++.......+. ||+..++.. ..+ +......+ ......+.+.|..+.+-+.+ . ....+.+|+.+++.
T Consensus 196 ~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~s~-~------~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDHTIC-LWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSV-A------DDQKLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTTSCEE-EEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSSCTTEEEEE-E------TTSEEEEEETTCSC
T ss_pred eEEEEeCCCeEE-EEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCCCCCEEEEE-e------CCCeEEEEECCCCC
Confidence 555555566677 888876321 111 11111011 22355566766443332222 2 14578899987642
Q ss_pred -E---EEccCCCcceecCCcceEEC--Cc-EEEEEeeCCCCCCCcEEEEEECCCce--eeeeCCCCccCCCCceEEEEEE
Q 017748 186 -W---RRIQDFPYFWVTGTCSVFVN--GA-LHWTAALNQDADRNDIIIAFDLKSEE--FYQVPLPPIVGIEGYYILLEAL 256 (366)
Q Consensus 186 -W---~~~~~~~~~~~~~~~~v~~~--G~-lYw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~l~~~ 256 (366)
. ..+.... ..-.++.++ |. ++..+... ..|..+|+.+.. ...+.... .....+...
T Consensus 266 ~~~~~~~~~~~~----~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~~~~~h~-----~~v~~i~~s 330 (430)
T 2xyi_A 266 TSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLHSFESHK-----DEIFQVQWS 330 (430)
T ss_dssp SSSCSEEEECCS----SCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSEEEECCS-----SCEEEEEEC
T ss_pred CCcceeEeecCC----CCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeEEeecCC-----CCEEEEEEC
Confidence 1 1111100 001122222 43 44444443 379999998632 22222111 122233333
Q ss_pred -CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCc--------eEEEEEeccCCCceeeEEEEecCCc-EEEEEeeCCeEE
Q 017748 257 -GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDS--------WTKLATLLNVGGGNVKPLVYSRSED-KVLLHAVRGDLC 325 (366)
Q Consensus 257 -~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~--------W~~~~~i~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~ 325 (366)
+| .+++.+..++ .+.||-+...+.... -..+....... ....-+.+..++. .++-...++.+.
T Consensus 331 p~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 331 PHNETILASSGTDR-----RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp SSCTTEEEEEETTS-----CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS-SCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCEEEEEeCCC-----cEEEEeCCCCccccCccccccCCcceEEEcCCCC-CCceEEEECCCCCCEEEEEECCCCEE
Confidence 24 4566555554 899999887432110 11222222111 1144556667774 444456677799
Q ss_pred EEeCCCCeEE
Q 017748 326 WYDLERHRVR 335 (366)
Q Consensus 326 ~yd~~t~~~~ 335 (366)
+|++.++.+.
T Consensus 405 iw~~~~~~~~ 414 (430)
T 2xyi_A 405 VWQMAENVYN 414 (430)
T ss_dssp EEEECHHHHC
T ss_pred EeEccccccc
Confidence 9998876654
No 226
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=47.26 E-value=1.4e+02 Score=25.67 Aligned_cols=156 Identities=7% Similarity=-0.019 Sum_probs=80.1
Q ss_pred eEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCc
Q 017748 147 LEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRND 223 (366)
Q Consensus 147 ~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~ 223 (366)
...+.+.+....+-+.+-. ...+.+|+..++.....-...... ..-.++.+ +|.....+..+ .
T Consensus 76 v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d------~ 141 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSK-------GGDIILWDYDVQNKTSFIQGMGPG-DAITGMKFNQFNTNQLFVSSIR------G 141 (383)
T ss_dssp EEEEEECSSCTTEEEEEEB-------TSCEEEEETTSTTCEEEECCCSTT-CBEEEEEEETTEEEEEEEEETT------T
T ss_pred EEEEEECCCCCCEEEEEcC-------CCeEEEEeCCCcccceeeecCCcC-CceeEEEeCCCCCCEEEEEeCC------C
Confidence 4455666543333333321 346888998877665432210000 00112222 33443333333 3
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|+.++....+...... ......+... +|+..+.+..+. .+.+|-++. . .+..+.... ..
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~----~---~~~~~~~h~-~~ 206 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSW--DYWYCCVDVSVSRQMLATGDSTG-----RLLLLGLDG----H---EIFKEKLHK-AK 206 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCS--SCCEEEEEEETTTTEEEEEETTS-----EEEEEETTS----C---EEEEEECSS-SC
T ss_pred EEEEEECCCCceEEEeccCCC--CCCeEEEEECCCCCEEEEECCCC-----CEEEEECCC----C---EEEEeccCC-Cc
Confidence 799999998777666444322 1122233333 466555555444 899998842 1 122232111 11
Q ss_pred eeEEEEecCCc-EEEEEeeCCeEEEEeCCC
Q 017748 303 VKPLVYSRSED-KVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 303 ~~~~~~~~~g~-~i~~~~~~~~~~~yd~~t 331 (366)
..-+.+..++. .++....++.+..||+++
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 44556667775 455556677799999987
No 227
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=46.72 E-value=43 Score=24.82 Aligned_cols=28 Identities=0% Similarity=0.138 Sum_probs=22.0
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.|+.....-.++.||..+++|++. +++|
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~-~iEG 57 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKT-DVEG 57 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEE-EEEE
T ss_pred HHHhhCCeEEEEEecCCcCceeEc-CCcc
Confidence 455555444588899999999999 9988
No 228
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=46.19 E-value=1.2e+02 Score=24.70 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=97.0
Q ss_pred EEeeeceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE
Q 017748 102 IIGSCNGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS 180 (366)
Q Consensus 102 ~~~s~~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys 180 (366)
+....+|-+.+.. ....+. ++||. ++...++.+.. .....++..|+.. . +.... .....+..|+
T Consensus 25 i~~d~~g~l~v~~~~~~~v~-~~~~~-~~~~~~~~~~~-----~~~~~~i~~~~~g-~--l~v~~-----~~~~~v~~~d 89 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKIS-SLDQS-GRIKEFEVPTP-----DAKVMCLIVSSLG-D--IWFTE-----NGANKIGKLS 89 (300)
T ss_dssp EEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSST-----TCCEEEEEECTTS-C--EEEEE-----TTTTEEEEEC
T ss_pred eeECCCCCEEEEcCCCCeEE-EECCC-CceEEEECCCC-----CCcceeEEECCCC-C--EEEEe-----cCCCeEEEEC
Confidence 3333456554444 456677 89988 66665443211 1234566666532 2 22211 1123567777
Q ss_pred ecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE-EC
Q 017748 181 LRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA-LG 257 (366)
Q Consensus 181 s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~ 257 (366)
.. +..+........ ....++.+ +|.+|+..... ..|..+|.. .+...+.+|... .....++. -+
T Consensus 90 ~~-g~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~---~~~~~i~~d~~ 156 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPD--SGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYDLPNKG---SYPAFITLGSD 156 (300)
T ss_dssp TT-SCEEEEECSSTT--CCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEECSSTT---CCEEEEEECTT
T ss_pred CC-CCeEEecCCCCC--CCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEccCCCCC---CCceeEEECCC
Confidence 66 666544211111 11123333 57766554322 379999998 666666565432 12233444 25
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE--EecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV--YSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
|+|++...... . |+.++.. .+... ..++. .. ..|.+ +..+| .+++... .+.+..||+ ++++
T Consensus 157 g~l~v~~~~~~-----~--i~~~~~~---g~~~~-~~~~~-~~--~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 157 NALWFTENQNN-----S--IGRITNT---GKLEE-YPLPT-NA--AAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp SSEEEEETTTT-----E--EEEECTT---CCEEE-EECSS-TT--CCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE
T ss_pred CCEEEEecCCC-----e--EEEECCC---CcEEE-eeCCC-CC--CCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcE
Confidence 78877654322 3 4455542 22333 22221 11 33444 44455 7777754 346999999 6666
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
..+
T Consensus 221 ~~~ 223 (300)
T 2qc5_A 221 SEY 223 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 229
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=46.14 E-value=1.3e+02 Score=25.03 Aligned_cols=93 Identities=5% Similarity=-0.021 Sum_probs=53.3
Q ss_pred EEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCc
Q 017748 224 IIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGG 301 (366)
Q Consensus 224 ~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 301 (366)
.|..+|+++... ..+...... ...+... +|++.+.+..+. .+.+|-++... .+..+.... .
T Consensus 36 ~v~lWd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~------~~~~~~~h~-~ 98 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVTETP-----VRAGKFIARKNWIIVGSDDF-----RIRVFNYNTGE------KVVDFEAHP-D 98 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSC-----EEEEEEEGGGTEEEEEETTS-----EEEEEETTTCC------EEEEEECCS-S
T ss_pred cEEEEECCCCceeEEeeccCCc-----EEEEEEeCCCCEEEEECCCC-----EEEEEECCCCc------EEEEEeCCC-C
Confidence 788889887654 223332221 1122222 456655555554 89999887521 223332111 1
Q ss_pred eeeEEEEecCCcEEEEEeeCCeEEEEeCCCCe
Q 017748 302 NVKPLVYSRSEDKVLLHAVRGDLCWYDLERHR 333 (366)
Q Consensus 302 ~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~ 333 (366)
...-+++.+++..++-...++.+..||++++.
T Consensus 99 ~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 130 (304)
T 2ynn_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred cEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence 24556677777566666677779999998873
No 230
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=45.68 E-value=42 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=28.4
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEE
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL 165 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~ 165 (366)
.++ +.+|.|+.|. |..... ..+...+..|...+.|+|+...
T Consensus 12 ~V~-~~d~~~~~W~--p~~~~~----g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVM-VYDDANKKWV--PAGGST----GFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEE-EEETTTTEEE--EGGGCC----SCEEEEEEEETTTTEEEEEEEE
T ss_pred EEE-EEcCCCCceE--ECCCCC----CceEEEEEEECCCCEEEEEEEE
Confidence 467 8999999764 433211 2345678889888889998864
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=45.09 E-value=1.4e+02 Score=25.13 Aligned_cols=201 Identities=8% Similarity=-0.005 Sum_probs=94.1
Q ss_pred EEeecCCccEEEEEeccccceeecCCcCCCCC-------------CCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEE
Q 017748 110 LALEDSRRNIMLLLNPLTKRHRVLPTFYRDLS-------------RCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEV 176 (366)
Q Consensus 110 l~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~-------------~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~ 176 (366)
+.+.....+++ .+||.+++...+..+..... .......++.+|+..+. ++... . ...+
T Consensus 33 l~v~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d---~---~~~i 103 (322)
T 2fp8_A 33 FYTSVQDGRVI-KYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVD---C---YYHL 103 (322)
T ss_dssp EEEECTTSEEE-EECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEE---T---TTEE
T ss_pred EEEEcCCCeEE-EECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEE---C---CCCE
Confidence 43333455677 78888776654432110000 00013456777763332 22221 0 1235
Q ss_pred EEEEecCCcEEEccCCCccee-cCCcceEE---CCcEEEEEeeCCC-----------CCCCcEEEEEECCCceeeee---
Q 017748 177 AVFSLRVNSWRRIQDFPYFWV-TGTCSVFV---NGALHWTAALNQD-----------ADRNDIIIAFDLKSEEFYQV--- 238 (366)
Q Consensus 177 ~vyss~t~~W~~~~~~~~~~~-~~~~~v~~---~G~lYw~~~~~~~-----------~~~~~~i~~fD~~~~~~~~i--- 238 (366)
.+|+..++..+.+........ .....+.+ +|.+|+....... ......|..||..+.+...+
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 183 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE 183 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC
Confidence 666666555544432111111 11223444 5777765432100 01124799999987766543
Q ss_pred -CCCCccCCCCceEEEEEE-CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEE
Q 017748 239 -PLPPIVGIEGYYILLEAL-GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKV 315 (366)
Q Consensus 239 -~lP~~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i 315 (366)
..|.. |+.. +|+ ||++..... .+.++.++.. ..........+ . + ..-+++..+| .|
T Consensus 184 ~~~p~g---------ia~~~dg~~lyv~d~~~~-----~I~~~~~~~~-~~~~~~~~~~~---~-g-P~gi~~d~~G-~l 242 (322)
T 2fp8_A 184 LHVPGG---------AEVSADSSFVLVAEFLSH-----QIVKYWLEGP-KKGTAEVLVKI---P-N-PGNIKRNADG-HF 242 (322)
T ss_dssp ESCCCE---------EEECTTSSEEEEEEGGGT-----EEEEEESSST-TTTCEEEEEEC---S-S-EEEEEECTTS-CE
T ss_pred CccCcc---------eEECCCCCEEEEEeCCCC-----eEEEEECCCC-cCCccceEEeC---C-C-CCCeEECCCC-CE
Confidence 23332 2333 344 676655433 4544444321 11223333221 1 1 2223444555 67
Q ss_pred EEEeeC-----------CeEEEEeCCCCeEEEeeeec
Q 017748 316 LLHAVR-----------GDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 316 ~~~~~~-----------~~~~~yd~~t~~~~~v~~~~ 341 (366)
++.... ..++.||++.+..+.+ ...
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~-~~~ 278 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVI-PLP 278 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEE-ECC
T ss_pred EEEecCcccccccCCCccEEEEECCCCCEEEEE-ECC
Confidence 776543 4599999987766666 554
No 232
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=43.75 E-value=2.1e+02 Score=26.85 Aligned_cols=101 Identities=13% Similarity=0.002 Sum_probs=56.5
Q ss_pred cEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCC
Q 017748 223 DIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGG 300 (366)
Q Consensus 223 ~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 300 (366)
..|..+|.++.+. ..++..... + .+... +|+..++...+. .+.+|-+.. .+-..+.+++....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p-----~-~v~~SpDGr~lyv~~~dg-----~V~viD~~~----~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAV-----H-ISRLSASGRYLFVIGRDG-----KVNMIDLWM----KEPTTVAEIKIGSE 241 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCE-----E-EEEECTTSCEEEEEETTS-----EEEEEETTS----SSCCEEEEEECCSE
T ss_pred CeEEEEECCCCeEEEEEeCCCCc-----c-ceEECCCCCEEEEEcCCC-----eEEEEECCC----CCCcEeEEEecCCC
Confidence 4899999998755 345544332 1 22322 455444443322 566655531 11234556665332
Q ss_pred ceeeEEEEe----cCCcEEEEEee-CCeEEEEeCCCCeEEEeeee
Q 017748 301 GNVKPLVYS----RSEDKVLLHAV-RGDLCWYDLERHRVRSIVEI 340 (366)
Q Consensus 301 ~~~~~~~~~----~~g~~i~~~~~-~~~~~~yd~~t~~~~~v~~~ 340 (366)
.+-+++. .+|+.+++... ++.+.++|..|.+..+...+
T Consensus 242 --P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 242 --ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp --EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred --CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 4445666 37767777654 46799999998876554344
No 233
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=43.60 E-value=2.2e+02 Score=27.04 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=76.0
Q ss_pred CccEEEEEEecCCcEEEccCCCcceecCCcceE--ECCc-EEEEEeeCCCCCCCcEEEEEECCCc-eeeeeCCCCccCCC
Q 017748 172 NYTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVF--VNGA-LHWTAALNQDADRNDIIIAFDLKSE-EFYQVPLPPIVGIE 247 (366)
Q Consensus 172 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~--~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~ 247 (366)
....+.+++..++.-+.+......... ...+. -+|. +++...... .....|..+|+.+. ....+.-.......
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~--~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKF-LTNLSWSPDENILYVAEVNRA--QNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCE-EEEEEECTTSSEEEEEEECTT--SCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCcee-EeeEEEECCCCEEEEEEeCCC--CCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 345788888888776554321100000 01121 2565 444333221 11247899999987 55544211110000
Q ss_pred CceEEEEEE---CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC-C-
Q 017748 248 GYYILLEAL---GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR-G- 322 (366)
Q Consensus 248 ~~~~~l~~~---~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~-~- 322 (366)
.....+... +|++.++...+. ...||.++..+ . .+..+...........++..+|+.|++...+ +
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g-----~~~l~~~~~~~--~---~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG-----WNHLYLYDTTG--R---LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP 379 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS-----SCEEEEEETTS--C---EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred CccCCceeecCCCCEEEEEEccCC-----ccEEEEEECCC--C---EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence 000011222 677544443332 68899988422 2 1223322211113346777888778777543 2
Q ss_pred ---eEEEEeCCCCeEEEe
Q 017748 323 ---DLCWYDLERHRVRSI 337 (366)
Q Consensus 323 ---~~~~yd~~t~~~~~v 337 (366)
.++.+|+++++.+.+
T Consensus 380 ~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp TCBEEEEEETTCCCCEES
T ss_pred ceEEEEEEEcCCCCceec
Confidence 689999998887666
No 234
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=42.67 E-value=1.7e+02 Score=25.32 Aligned_cols=189 Identities=9% Similarity=-0.004 Sum_probs=93.2
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
.+.+++.. ...+. ..++.+.....+-.. .....++.+|+..+. |...- . ....+..++...+.-
T Consensus 44 ~~~ll~~~-~~~I~-~i~~~g~~~~~~~~~-------~~~~~~l~~d~~~~~--ly~~D---~--~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 44 EPVLLFAN-RIDIR-QVLPHRSEYTLLLNN-------LENAIALDFHHRREL--VFWSD---V--TLDRILRANLNGSNV 107 (349)
T ss_dssp CCEEEEEC-BSCEE-EECTTSCCEEEEECS-------CSCEEEEEEETTTTE--EEEEE---T--TTTEEEEEETTSCSC
T ss_pred CceeEeec-ccceE-EEeCCCCeeEEeecC-------CCceEEEEEeccccE--EEEEe---c--cCCceEEEecCCCCc
Confidence 34444442 33456 666665554433221 123567888876542 22221 1 133566666665544
Q ss_pred EEccCCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCeEE
Q 017748 187 RRIQDFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGCLC 261 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~ 261 (366)
+.+..... ....++.+ +|.+||..... ..|.++|+....-..+. .... .....+++- +|.||
T Consensus 108 ~~~~~~~~---~~p~glavd~~~g~ly~~d~~~------~~I~~~~~dG~~~~~l~-~~~l---~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 108 EEVVSTGL---ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSL---EKPRAIALHPMEGTIY 174 (349)
T ss_dssp EEEECSSC---SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEE-CTTC---SCEEEEEEETTTTEEE
T ss_pred eEEEeCCC---CCccEEEEecCCCeEEEEcCCC------CeEEEEcCCCCceEEEE-eCCC---CCcceEEEecCcCeEE
Confidence 43311100 11224444 58999987654 47999998865433331 1111 112234444 67888
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEE--ecCCcEEEEEeeC-CeEEEEeCCCCeEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVY--SRSEDKVLLHAVR-GDLCWYDLERHRVRSI 337 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v 337 (366)
+..... .-.|+..+-.+.. ...+-...+ ..|.++ ..+++.||+.... .++..+|+....-+.+
T Consensus 175 ~td~~~------~~~I~r~~~dG~~-----~~~~~~~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 175 WTDWGN------TPRIEASSMDGSG-----RRIIADTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEECSS------SCEEEEEETTSCS-----CEESCCSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EeccCC------CCEEEEEeCCCCC-----cEEEEECCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 876532 1345555543321 112211222 455554 4345588887543 4588888876554444
No 235
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=42.65 E-value=1.5e+02 Score=24.99 Aligned_cols=180 Identities=11% Similarity=0.024 Sum_probs=89.4
Q ss_pred CccEEEEEeccccceeec-CCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecC----CcEEEcc
Q 017748 116 RRNIMLLLNPLTKRHRVL-PTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRV----NSWRRIQ 190 (366)
Q Consensus 116 ~~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t----~~W~~~~ 190 (366)
...+. +.++.+++...+ |.. ....++.+|+..+. |...- . ....+..++..+ ..-+.+-
T Consensus 9 ~~~I~-~i~~~~~~~~~~~~~~--------~~p~g~~~d~~~~~--ly~~D---~--~~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 9 RHEVR-KMTLDRSEYTSLIPNL--------RNVVALDTEVASNR--IYWSD---L--SQRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp BSSEE-EEETTSCCCEEEECSC--------SSEEEEEEETTTTE--EEEEE---T--TTTEEEEEEC--------CEEEE
T ss_pred CCeEE-EEECCCcceEehhcCC--------CceEEEEEEeCCCE--EEEEE---C--CCCcEEEEECCCCCCCcccEEEE
Confidence 34566 777777665443 221 23567888876442 22221 1 134566666654 1112211
Q ss_pred CCCcceecCCcceEE---CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEE--ECCeEEEEEe
Q 017748 191 DFPYFWVTGTCSVFV---NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEA--LGGCLCLLCK 265 (366)
Q Consensus 191 ~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~l~~~ 265 (366)
. ... ....++.+ +|.+||..... ..|..+|+.......+. .... .....+++ .+|.||+...
T Consensus 73 ~--~~~-~~p~glavd~~~~~ly~~d~~~------~~I~~~~~~g~~~~~~~-~~~~---~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 73 S--RDI-QAPDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLF-RENG---SKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp C--SSC-SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEE-ECTT---CCEEEEEEETTTTEEEEEEC
T ss_pred e--CCC-CCcCEEEEeecCCeEEEEECCC------CEEEEEeCCCCceEEEE-ECCC---CCcceEEeCCCCCEEEEEcc
Confidence 0 000 11234444 68999986544 37999999865443331 1111 12223444 3678888764
Q ss_pred ecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEE--EecCCcEEEEEeeC-CeEEEEeCCCCeEEEe
Q 017748 266 FDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLV--YSRSEDKVLLHAVR-GDLCWYDLERHRVRSI 337 (366)
Q Consensus 266 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~g~~i~~~~~~-~~~~~yd~~t~~~~~v 337 (366)
.. .-.|++++-.+. -.+ .+....+ ..|.+ +..+++.||+.... .++..+|++....+.+
T Consensus 140 ~~------~~~I~~~~~dG~---~~~--~~~~~~~--~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 140 GT------PAKIKKGGLNGV---DIY--SLVTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp SS------SCEEEEEETTSC---CEE--EEECSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CC------CCeEEEEcCCCC---CeE--EEEECCC--CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 22 134555554332 111 2211222 44544 44456688887643 4689999987666555
No 236
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=39.60 E-value=1.8e+02 Score=25.41 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=42.9
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC-CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV-GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+|.+.+.+..+. .+.+|-++... .+..+... ..+...-+++..++..++....++.+..||+++++..
T Consensus 181 ~~~~l~~~~~d~-----~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 181 EKSLLVALTNLS-----RVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEEEETTS-----EEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 356655555544 89999887621 23333221 0011455666777756666677777999999998865
Q ss_pred Ee
Q 017748 336 SI 337 (366)
Q Consensus 336 ~v 337 (366)
..
T Consensus 250 ~~ 251 (437)
T 3gre_A 250 RS 251 (437)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 237
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.55 E-value=29 Score=22.62 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=17.5
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEE
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
-......++++|+||..|+.-.+
T Consensus 22 W~~v~T~dGR~fyyN~~Tk~S~W 44 (73)
T 2dk7_A 22 WCVVWTGDERVFFYNPTTRLSMW 44 (73)
T ss_dssp CEEEEESSSCEEEEETTTTEECS
T ss_pred cEEEECCCCCEEEecCcccceec
Confidence 34555667889999999998544
No 238
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=38.97 E-value=2.8e+02 Score=26.94 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=66.1
Q ss_pred EECCcEEEEEeeC--CC--CCCCcEEEEEECCC--------ceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCC
Q 017748 204 FVNGALHWTAALN--QD--ADRNDIIIAFDLKS--------EEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDD 271 (366)
Q Consensus 204 ~~~G~lYw~~~~~--~~--~~~~~~i~~fD~~~--------~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~ 271 (366)
..+|.+|...... .+ ......|++.|+.+ ..|+.+-.|... ..--.+...++.|++....+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~~~~--- 370 (711)
T 4hvt_A 297 SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN---EVFNFISTTKDRVFLATYDNV--- 370 (711)
T ss_dssp EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT---EEEEEEEECSSCEEEEEEETT---
T ss_pred eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC---CeEEEEEEECCEEEEEEEECC---
Confidence 5788888866332 00 01124799999875 357765445432 122344556788887777655
Q ss_pred CCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 272 DRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 272 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
.-.+.+++-. .+.|.....+.....+.........+++.+++.... ..++.||+. ++++.+
T Consensus 371 --~~~l~~~~~~--~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l 435 (711)
T 4hvt_A 371 --VAKVVTFTLE--NEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKII 435 (711)
T ss_dssp --EEEEEEECEE--TTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEE
T ss_pred --EEEEEEEECC--CCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEE
Confidence 3344444321 134744322433221113333334556567766432 359999988 766655
No 239
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=38.15 E-value=2.7e+02 Score=26.58 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=76.1
Q ss_pred ccEEEEEEecC------C--cEEEccCCCcceecCCcceEEC-CcEEEEEeeCCCCCCCcEEEEEECCCc---eeeeeCC
Q 017748 173 YTEVAVFSLRV------N--SWRRIQDFPYFWVTGTCSVFVN-GALHWTAALNQDADRNDIIIAFDLKSE---EFYQVPL 240 (366)
Q Consensus 173 ~~~~~vyss~t------~--~W~~~~~~~~~~~~~~~~v~~~-G~lYw~~~~~~~~~~~~~i~~fD~~~~---~~~~i~l 240 (366)
...+.+++..+ + .++.+...... ....+.-+ +.+|+.+.... ....|..+|+.+. .|..+.-
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEG---EYDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSS---CEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEEC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCc---EEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccC
Confidence 34566666654 3 46655422111 11123333 45677664331 1247999999875 4665533
Q ss_pred CCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe
Q 017748 241 PPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA 319 (366)
Q Consensus 241 P~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~ 319 (366)
+... .....+... ++.|++....+. ...||+++-.. ++ .+..+.... +...-+++..+++.+++..
T Consensus 332 ~~~~---~~~~~~~~~~~~~lv~~~~~~g-----~~~l~~~~~~~--g~--~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 332 EHEK---DVLEWVACVRSNFLVLCYLHDV-----KNTLQLHDLAT--GA--LLKIFPLEV-GSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp CCSS---CEEEEEEEETTTEEEEEEEETT-----EEEEEEEETTT--CC--EEEEECCCS-SEEEEEECCTTCSEEEEEE
T ss_pred CCCC---CeEEEEEEEcCCEEEEEEEECC-----EEEEEEEECCC--CC--EEEecCCCC-ceEEEEecCCCCCEEEEEE
Confidence 2221 012234445 678887776655 56677776411 11 233444322 1122334445666777765
Q ss_pred eC----CeEEEEeCCCCe--EEEe
Q 017748 320 VR----GDLCWYDLERHR--VRSI 337 (366)
Q Consensus 320 ~~----~~~~~yd~~t~~--~~~v 337 (366)
.+ ..++.||+++++ .+.+
T Consensus 399 ss~~~P~~i~~~d~~tg~~~~~~l 422 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEELEPRVF 422 (710)
T ss_dssp ECSSCCCEEEEEETTSSSCCCEEE
T ss_pred eCCCCCCEEEEEECCCCccceEEe
Confidence 43 359999999877 5443
No 240
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=37.83 E-value=1.2e+02 Score=29.54 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=30.6
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCcee
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEF 235 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~ 235 (366)
...+++|+.....-+.+..............+.++.+||..... ..|.++|..+.+.
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~------~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN------EAIFSANRLTGSD 617 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTT------TCEEEEETTTEEE
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCC------CeEEEEEccCCCc
Confidence 44677777754333333221111111121234567899987543 3799999876654
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=37.30 E-value=1.9e+02 Score=24.44 Aligned_cols=197 Identities=8% Similarity=-0.053 Sum_probs=92.8
Q ss_pred ceeEE-eecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLA-LEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~-~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|.+. .......++ ++||.+++...++.+. ...++.+++. +. ++... ...+.+|+..++.
T Consensus 60 ~~~l~~~d~~~~~i~-~~d~~~~~~~~~~~~~--------~v~~i~~~~d-g~--l~v~~-------~~gl~~~d~~~g~ 120 (326)
T 2ghs_A 60 SGTAWWFNILERELH-ELHLASGRKTVHALPF--------MGSALAKISD-SK--QLIAS-------DDGLFLRDTATGV 120 (326)
T ss_dssp TTEEEEEEGGGTEEE-EEETTTTEEEEEECSS--------CEEEEEEEET-TE--EEEEE-------TTEEEEEETTTCC
T ss_pred CCEEEEEECCCCEEE-EEECCCCcEEEEECCC--------cceEEEEeCC-Ce--EEEEE-------CCCEEEEECCCCc
Confidence 34443 333456688 8999988766553221 2334556654 22 22221 2247888888888
Q ss_pred EEEccCCCccee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-eE
Q 017748 186 WRRIQDFPYFWV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG-CL 260 (366)
Q Consensus 186 W~~~~~~~~~~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g-~L 260 (366)
.+.+...+.... .....+.+ +|.+|+-............|..+| +.+...+. ... ...-.++.. +| .|
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~--~~~---~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF--ADI---SIPNSICFSPDGTTG 193 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE--EEE---SSEEEEEECTTSCEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee--CCC---cccCCeEEcCCCCEE
Confidence 876543321100 00112222 577655433221111224789999 45554431 111 011123333 45 46
Q ss_pred EEEEeecCCCCCCcEEEEEec-cCCCCCceE--E-EEEeccCCCceeeEEE--EecCCcEEEEEee-CCeEEEEeCCCCe
Q 017748 261 CLLCKFDDDDDDRPWDLWVMK-EYGVNDSWT--K-LATLLNVGGGNVKPLV--YSRSEDKVLLHAV-RGDLCWYDLERHR 333 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~-~~~~~~~W~--~-~~~i~~~~~~~~~~~~--~~~~g~~i~~~~~-~~~~~~yd~~t~~ 333 (366)
+++..... .+.+|.++ ..+. ... + ...+... . ..|.+ +..+| .+++... ++.+..||++.+.
T Consensus 194 yv~~~~~~-----~I~~~d~~~~~Gl--~~~~~~~~~~~~~~-~--~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 194 YFVDTKVN-----RLMRVPLDARTGL--PTGKAEVFIDSTGI-K--GGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNH 262 (326)
T ss_dssp EEEETTTC-----EEEEEEBCTTTCC--BSSCCEEEEECTTS-S--SEEEEEEECTTS-CEEEEEETTTEEEEECTTCCE
T ss_pred EEEECCCC-----EEEEEEcccccCC--cccCceEEEECCCC-C--CCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCE
Confidence 66543222 45555443 1110 111 1 1122211 1 23434 44455 6777654 4579999997666
Q ss_pred EEEeeeec
Q 017748 334 VRSIVEID 341 (366)
Q Consensus 334 ~~~v~~~~ 341 (366)
.+.+ .+.
T Consensus 263 ~~~i-~~~ 269 (326)
T 2ghs_A 263 IARY-EVP 269 (326)
T ss_dssp EEEE-ECS
T ss_pred EEEE-ECC
Confidence 6666 554
No 242
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=37.29 E-value=1.9e+02 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=22.0
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
..-+++.++|..|+....++.+..||.+++
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 344667788866777777888999988764
No 243
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=37.08 E-value=1.9e+02 Score=24.35 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=48.1
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
+|++.+.+..+. .+.||.+++.+ ..+..+..+.... ....-+.+.+++..|+-...++.+..||..++.++.
T Consensus 118 ~g~~las~s~D~-----~v~iwd~~~~~--~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 118 DGYYLATCSRDK-----SVWIWETDESG--EEYECISVLQEHS-QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp TSCEEEEEETTS-----CEEEEECCTTC--CCCEEEEEECCCS-SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeccCCC--CCeEEEEEeccCC-CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 466555555444 89999986532 3465555554211 114445666777556556667779999998887766
Q ss_pred eeeecC
Q 017748 337 IVEIDD 342 (366)
Q Consensus 337 v~~~~~ 342 (366)
+..+.+
T Consensus 190 ~~~~~~ 195 (330)
T 2hes_X 190 VAVLNG 195 (330)
T ss_dssp EEEECC
T ss_pred EEEccC
Confidence 544444
No 244
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=37.00 E-value=1.9e+02 Score=24.40 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=88.5
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcE
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSW 186 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W 186 (366)
+|.++....+..+. +||..+++....-.. + ......+.+.|.. .+ ++... ....+.+++.+++.-
T Consensus 154 ~~~l~s~s~d~~i~-~wd~~~~~~~~~~~~---h---~~~v~~~~~~~~~-~~-l~sg~------~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 154 DNQIVTSSGDTTCA-LWDIETGQQTTTFTG---H---TGDVMSLSLAPDT-RL-FVSGA------CDASAKLWDVREGMC 218 (340)
T ss_dssp TTEEEEEETTSCEE-EEETTTTEEEEEECC---C---SSCEEEEEECTTS-SE-EEEEE------TTSCEEEEETTTCSE
T ss_pred CCcEEEEECCCcEE-EEECCCCcEEEEEcC---C---CCceEEEEECCCC-CE-EEEEe------CCCcEEEEECCCCee
Confidence 34444444556677 888888765432111 1 1134455665532 22 22221 144678888776543
Q ss_pred EE-ccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEE
Q 017748 187 RR-IQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLC 261 (366)
Q Consensus 187 ~~-~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~ 261 (366)
.. +..-... -.++.+ +|.....+..+ ..|..+|+.+.+-.. +..+... .....+... +|++.
T Consensus 219 ~~~~~~h~~~----v~~v~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l 285 (340)
T 1got_B 219 RQTFTGHESD----INAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYSHDNII---CGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEECCCSSC----EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTTCC---SCEEEEEECTTSSEE
T ss_pred EEEEcCCcCC----EEEEEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEEEccCCcc---cceEEEEECCCCCEE
Confidence 21 1111111 112222 45544444333 368899998765422 2322211 012223333 56776
Q ss_pred EEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEEe
Q 017748 262 LLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWYD 328 (366)
Q Consensus 262 l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd 328 (366)
+++..+. .+.+|-+... ..+..+.-.. ....-+++..+|..|+-...++.+..||
T Consensus 286 ~~g~~d~-----~i~vwd~~~~------~~~~~~~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDF-----NCNVWDALKA------DRAGVLAGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTS-----EEEEEETTTC------CEEEEEECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCC-----eEEEEEcccC------cEeeEeecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 6666554 8999987652 2333332211 1144456667775555566666677765
No 245
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=36.73 E-value=2.1e+02 Score=24.84 Aligned_cols=112 Identities=8% Similarity=-0.084 Sum_probs=55.5
Q ss_pred ceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecC-CCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVG-SGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~-~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|+|++...+..++ -+|..||+.++--...... .......... .+.. ++.+. . .....+..|+.+++.
T Consensus 10 ~~~V~v~t~dG~l~-Ald~~tG~~~W~~~~~~~~-----p~~~~~~~~~~~~~~-~~vv~--p--~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 10 SDILIAADVEGGLH-AVDRRNGHIIWSIEPENFQ-----PLIEIQEPSRLETYE-TLIIE--P--FGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEETTSCEE-EEETTTTEEEEEECGGGSC-----CSEECCCSCTTTSSE-EEEEC--C--STTTEEEEEETTTEE
T ss_pred CCEEEEEeCCCeEE-EEECCCCcEEEEecCCccC-----CcEEecCCccccCCc-EEEEE--E--CCCCEEEEEECCCCc
Confidence 56777777777788 8888887754421111000 0000000000 1112 22221 0 013456677777766
Q ss_pred EEEccCCCcce-----ecCCcceE-------ECCcEEEEEeeCCCCCCCcEEEEEECCCceee
Q 017748 186 WRRIQDFPYFW-----VTGTCSVF-------VNGALHWTAALNQDADRNDIIIAFDLKSEEFY 236 (366)
Q Consensus 186 W~~~~~~~~~~-----~~~~~~v~-------~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~ 236 (366)
|+--..++... .....+|. .+|.+|.-...+ .+.++|..+++-.
T Consensus 79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-------~l~ald~~tG~~~ 134 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT-------IMYTINMLNGEII 134 (339)
T ss_dssp EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEE-------EEEEEETTTCCEE
T ss_pred EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCC-------EEEEEECCCCcEE
Confidence 65321222111 01233444 789999888776 8999999986543
No 246
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.22 E-value=86 Score=26.98 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=52.6
Q ss_pred cEEEEEECCCceeeeeCCCCccCCCCceEEEEEE--CCe-EEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC
Q 017748 223 DIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL--GGC-LCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG 299 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~-L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 299 (366)
..|..+|+.+.+...+.-... ....+... +|+ |+++.. .. .......||.++-.+ ..+..+.. ...
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~-----~~~~~~~sp~dg~~l~~~~~-~~-~~~~~~~l~~~d~~~--~~~~~l~~--~~~ 236 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTA-----WLGHPIYRPFDDSTVGFCHE-GP-HDLVDARMWLVNEDG--SNVRKIKE--HAE 236 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESS-----CEEEEEEETTEEEEEEEEEC-SC-SSSCSCCCEEEETTS--CCCEESSC--CCT
T ss_pred ceEEEEECCCCcEEeeccCCc-----ccccceECCCCCCEEEEEec-CC-CCCCCceEEEEECCC--CceeEeec--cCC
Confidence 478899998877655531111 12223333 244 555442 21 111114566665432 22332211 111
Q ss_pred CceeeEEEEecCCcEEEEEeeC-----CeEEEEeCCCCeEEEe
Q 017748 300 GGNVKPLVYSRSEDKVLLHAVR-----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 300 ~~~~~~~~~~~~g~~i~~~~~~-----~~~~~yd~~t~~~~~v 337 (366)
........+.++|+.|++...+ ..++.+|+++++.+.+
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV 279 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence 1113335667788667776432 2399999999988776
No 247
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=35.92 E-value=3.1e+02 Score=26.60 Aligned_cols=120 Identities=7% Similarity=0.034 Sum_probs=62.4
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECCC-ceeee-eCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccC
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLKS-EEFYQ-VPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEY 283 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~~-~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~ 283 (366)
++.+|+++..... ....|+.+|+.+ +.|.. +- |... +.....+...++.|++....+. ...||+++-.
T Consensus 330 g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~~li-~~~~--~~~l~~~~~~~~~lv~~~~~~g-----~~~l~~~dl~ 399 (751)
T 2xe4_A 330 TSHLVILTNEGGA--VNHKLLIAPRGQPSDWSHVLV-DHSE--DVFMESIAVRSNYLVVAGRRAG-----LTRIWTMMAD 399 (751)
T ss_dssp TTEEEEEECTTTC--TTCEEEEEETTSTTCCCCEEE-CCCS--SEEEEEEEECSSEEEEEEEETT-----EEEEEEEECC
T ss_pred CCEEEEEeCCCCC--CCcEEEEEcCCCcccceeeEE-CCCC--CcEEEEEEEECCEEEEEEEeCC-----EEEEEEEecc
Confidence 5678888765411 124899999986 67765 32 2211 0012233444677777776655 6677777630
Q ss_pred CCCCceE--E-EEEeccCCCceeeEEEE------ecCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 284 GVNDSWT--K-LATLLNVGGGNVKPLVY------SRSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 284 ~~~~~W~--~-~~~i~~~~~~~~~~~~~------~~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
.....|. + ...+..... ....++ ..+++.+++.... ..++.||+.+++.+.+
T Consensus 400 ~~~~~~~~g~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l 464 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEEP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAV 464 (751)
T ss_dssp TTTSCCCTTTCCEECCCCCS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEE
T ss_pred cccccccCCccceEECCCCc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 0000010 1 223332221 112334 2345566665432 2499999998887665
No 248
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=33.99 E-value=2.4e+02 Score=24.60 Aligned_cols=197 Identities=9% Similarity=0.050 Sum_probs=0.0
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCC----------------------------------CCCCCcceEEEeee
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRD----------------------------------LSRCVPSLEGFGFD 153 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~----------------------------------~~~~~~~~~~lg~d 153 (366)
.+++....+..+. +||..+++...-.-.... ..........+.+.
T Consensus 108 ~~l~s~s~d~~i~-iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 108 AQFLLSTNDKTIK-LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SEEEEEECSSCEE-EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred ceEEEeCCCCeEE-EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Q ss_pred cCCCCeEEEEEEEEcCCCCccEEEEEEec--CCcEEEccCCCccee---cCCcceEEC--C-cEEEEEeeCCCCCCCcEE
Q 017748 154 VGSGDFKLVKILAFGKPMNYTEVAVFSLR--VNSWRRIQDFPYFWV---TGTCSVFVN--G-ALHWTAALNQDADRNDII 225 (366)
Q Consensus 154 ~~~~~ykvv~~~~~~~~~~~~~~~vyss~--t~~W~~~~~~~~~~~---~~~~~v~~~--G-~lYw~~~~~~~~~~~~~i 225 (366)
+ .+.+-+.+ . ...+.+++.. ....+.+...+.... ..-.++.+. | .+...+..+ ..|
T Consensus 187 ~-~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i 251 (447)
T 3dw8_B 187 S-DYETYLSA-D-------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK------GTI 251 (447)
T ss_dssp T-TSSEEEEE-C-------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT------SCE
T ss_pred C-CCCEEEEe-C-------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC------CeE
Q ss_pred EEEECCCcee-----eeeCCCCc------------cCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCc
Q 017748 226 IAFDLKSEEF-----YQVPLPPI------------VGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDS 288 (366)
Q Consensus 226 ~~fD~~~~~~-----~~i~lP~~------------~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~ 288 (366)
..+|+.+.+. ..+..+.. . ....-..-+|++.+.... . .+.||-+...+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~~~-~-----~v~iwd~~~~~~--- 318 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS----ISDVKFSHSGRYMMTRDY-L-----SVKVWDLNMENR--- 318 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC----EEEEEECTTSSEEEEEES-S-----EEEEEETTCCSS---
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCce----EEEEEECCCCCEEEEeeC-C-----eEEEEeCCCCcc---
Q ss_pred eEEEEEeccCCCceeeE----------------EEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 289 WTKLATLLNVGGGNVKP----------------LVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 289 W~~~~~i~~~~~~~~~~----------------~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+..+..... ... +++..+|..|+....++.+..||+++++...+
T Consensus 319 --~~~~~~~~~~--~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 319 --PVETYQVHEY--LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp --CSCCEESCGG--GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred --ccceeecccc--ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
No 249
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.92 E-value=2.2e+02 Score=24.23 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=92.2
Q ss_pred ccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcC-CCCccEEEEEEecCCcEEEccCCCcc
Q 017748 117 RNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGK-PMNYTEVAVFSLRVNSWRRIQDFPYF 195 (366)
Q Consensus 117 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~-~~~~~~~~vyss~t~~W~~~~~~~~~ 195 (366)
..++ ++|..+++...+.... .....+.+.|..+. +++.... .. ......+.+++..++.++.+..-...
T Consensus 168 ~~l~-~~d~~~g~~~~~~~~~-------~~~~~~~~sp~dg~-~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (396)
T 3c5m_A 168 CRLI-KVDIETGELEVIHQDT-------AWLGHPIYRPFDDS-TVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEG 237 (396)
T ss_dssp EEEE-EEETTTCCEEEEEEES-------SCEEEEEEETTEEE-EEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTT
T ss_pred ceEE-EEECCCCcEEeeccCC-------cccccceECCCCCC-EEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCC
Confidence 4678 8999998877665321 12233444442122 2222221 11 11125678888877777766431101
Q ss_pred eecCCcceE-ECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeee-CCCCccCCCCceEEEEEE-CCeEEEEEeecCC--
Q 017748 196 WVTGTCSVF-VNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQV-PLPPIVGIEGYYILLEAL-GGCLCLLCKFDDD-- 269 (366)
Q Consensus 196 ~~~~~~~v~-~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~-- 269 (366)
... ....+ -+|. +++....... ....|..+|+.+.+...+ .+|. . .. ...- +|++++......+
T Consensus 238 ~~~-~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~-~-----~~-~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 238 ESC-THEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVMVMPP-C-----SH-LMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp EEE-EEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEEECCS-E-----EE-EEECSSSSEEEEEECCC---
T ss_pred ccc-cceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEeeeCCC-C-----CC-CccCCCCceEEEecCCccee
Confidence 000 00111 2564 6666554321 112599999988776555 3442 1 11 1223 6776555332100
Q ss_pred -------CCCCcEEEEEeccCCCCCceEEEEEeccCC-------CceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCC
Q 017748 270 -------DDDRPWDLWVMKEYGVNDSWTKLATLLNVG-------GGNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERH 332 (366)
Q Consensus 270 -------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-------~~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~ 332 (366)
.....-.||.++-.. +...++..-.... ........+..+|+.|++..... .++.+|+.++
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKA--KSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp -------CCCCCCEEEEEETTT--TBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eccccccccCCCCcEEEEeccc--CceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 000123455544322 2222222211100 00011234567787787776432 4899999888
Q ss_pred eEEEe
Q 017748 333 RVRSI 337 (366)
Q Consensus 333 ~~~~v 337 (366)
+...+
T Consensus 386 ~~~~~ 390 (396)
T 3c5m_A 386 YKHLE 390 (396)
T ss_dssp CC---
T ss_pred ccccc
Confidence 87766
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=33.01 E-value=1.5e+02 Score=24.65 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=9.4
Q ss_pred EEEEEeeCCeEEEEeCCC
Q 017748 314 KVLLHAVRGDLCWYDLER 331 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t 331 (366)
.|++...++.+.....+.
T Consensus 307 ~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 307 TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEEEECTTSCEEEEEC--
T ss_pred EEEEEcCCCeEEEEeccc
Confidence 677766666444444433
No 251
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=32.67 E-value=1.7e+02 Score=24.95 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=33.7
Q ss_pred ceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCce-eeeeCCCCccC-CCCceEEEEEE--CCeEEEEEe
Q 017748 202 SVFV--NGALHWTAALNQDADRNDIIIAFDLKSEE-FYQVPLPPIVG-IEGYYILLEAL--GGCLCLLCK 265 (366)
Q Consensus 202 ~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~-~~~i~lP~~~~-~~~~~~~l~~~--~g~L~l~~~ 265 (366)
++.+ +|.+|++..... ......|+.||+.+++ ...+.+|.... .....-.++.. +|.+|+...
T Consensus 71 gv~~d~~g~L~v~D~g~~-~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQ-SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp EEEECSSSEEEEEECHHH-HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCcEEEEcCCCC-cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 4555 378888764310 0001379999999877 45667764321 11111234444 466766654
No 252
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=32.58 E-value=79 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=23.1
Q ss_pred EEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 314 KVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 314 ~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
.|++....-.++.||.++++|++. +++|
T Consensus 36 qIL~~t~hasvYkfd~~~~eW~K~-~~eG 63 (231)
T 1q67_A 36 QLLFHTPHASLYKWDFKKDEWNKL-EYQG 63 (231)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEE-EEEE
T ss_pred HHHhcCCeEEEEEecCCCCceEec-CcEE
Confidence 456665555699999999999999 9998
No 253
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=31.74 E-value=74 Score=22.78 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=29.0
Q ss_pred cEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEE
Q 017748 118 NIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL 165 (366)
Q Consensus 118 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~ 165 (366)
.++ +++|.|+.|. |...... ..+...+..|+..+.|.|+...
T Consensus 12 ~V~-~~d~~~~~W~--p~~~g~~---gvs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVM-LYDDGNKRWL--PAGTGPQ---AFSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECB-EECTTTSSCC--BSSCSCC---CCEEEEEEEETTTTEEEEEEEE
T ss_pred EEE-EEcCCCCcee--ECCCCCC---CccEEEEEEeCCCCEEEEEEEE
Confidence 467 8899999964 4332111 2345778889888889998865
No 254
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=31.72 E-value=2.4e+02 Score=24.05 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=60.0
Q ss_pred CCcEEEEEeeCCCCCCCcEEEEEECC-Cceeee---eCCCC-ccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEE
Q 017748 206 NGALHWTAALNQDADRNDIIIAFDLK-SEEFYQ---VPLPP-IVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWV 279 (366)
Q Consensus 206 ~G~lYw~~~~~~~~~~~~~i~~fD~~-~~~~~~---i~lP~-~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~ 279 (366)
+|...+.+..+. ..|..||+. +.+... +.+|. .. ....++.. +|+..++...... .+.+|.
T Consensus 155 dG~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~~g~----~p~~~~~spdg~~l~v~~~~~~----~v~v~~ 221 (365)
T 1jof_A 155 TETYLYSADLTA-----NKLWTHRKLASGEVELVGSVDAPDPGD----HPRWVAMHPTGNYLYALMEAGN----RICEYV 221 (365)
T ss_dssp TSSEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECSSTTC----CEEEEEECTTSSEEEEEETTTT----EEEEEE
T ss_pred CCCEEEEEcCCC-----CEEEEEEECCCCCEEEeeeEecCCCCC----CCCEeEECCCCCEEEEEECCCC----eEEEEE
Confidence 576444544332 378889987 665543 34442 21 12233333 4644333332222 889998
Q ss_pred eccCCCCCceEE----EEEeccCCCc---------eeeEEE-EecCCcEEEEEee-CC-----eEEEEeCC-CCeEEEe
Q 017748 280 MKEYGVNDSWTK----LATLLNVGGG---------NVKPLV-YSRSEDKVLLHAV-RG-----DLCWYDLE-RHRVRSI 337 (366)
Q Consensus 280 l~~~~~~~~W~~----~~~i~~~~~~---------~~~~~~-~~~~g~~i~~~~~-~~-----~~~~yd~~-t~~~~~v 337 (366)
++... ++... +..++....+ ...-++ +.++|+.|+.... .+ .+..|+++ +++++.+
T Consensus 222 ~~~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 222 IDPAT--HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp ECTTT--CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred EeCCC--CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence 87521 22322 2222221100 133355 6788866766543 23 68899986 7777753
No 255
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=31.65 E-value=2.6e+02 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=42.3
Q ss_pred EEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee----------CCeEEEEeCCCCeEEEeeeec
Q 017748 276 DLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV----------RGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 276 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~----------~~~~~~yd~~t~~~~~v~~~~ 341 (366)
.|+++|- .++..+.+++.... . -+.+..+|+.+|+... ++.+..+|+.|++...-..+.
T Consensus 47 ~vsvID~----~t~~v~~~i~vG~~--P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCA----GCGVTLGHSLGAFL--S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEET----TTTEEEEEEEECTT--C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEEC----CCCeEEEEEeCCCC--C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 7777875 45788888887654 3 3667788878888862 345999999998875332664
No 256
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=30.87 E-value=2.7e+02 Score=24.31 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=66.9
Q ss_pred eeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEE
Q 017748 108 GLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWR 187 (366)
Q Consensus 108 Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~ 187 (366)
.+++....+..+. |||..+++....-.. + ......+.+++.. .+ ++... . ...+.+|+..++.-.
T Consensus 121 ~~l~s~s~Dg~i~-vwd~~~~~~~~~l~~---h---~~~V~~v~~~~~~-~~-l~sgs--~----D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 121 SVMVSASEDATIK-VWDYETGDFERTLKG---H---TDSVQDISFDHSG-KL-LASCS--A----DMTIKLWDFQGFECI 185 (410)
T ss_dssp SEEEEEESSSCEE-EEETTTCCCCEEECC---C---SSCEEEEEECTTS-SE-EEEEE--T----TSCCCEEETTSSCEE
T ss_pred CEEEEEeCCCeEE-EEECCCCcEEEEEec---c---CCcEEEEEEcCCC-CE-EEEEe--C----CCeEEEEeCCCCcee
Confidence 3444444566788 999988875432111 1 1234456666542 22 22221 1 345667777654321
Q ss_pred EccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeee-eCCCCccCCCCceEEEEEE-CCeEEEE
Q 017748 188 RIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEAL-GGCLCLL 263 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L~l~ 263 (366)
. .+.... ..-.++.+ +|.....+..+ ..|..+|+.+..... +..... ....+... +|.+.+.
T Consensus 186 ~--~~~~h~-~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 186 R--TMHGHD-HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIAS 251 (410)
T ss_dssp E--CCCCCS-SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEE
T ss_pred E--EEcCCC-CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEE
Confidence 1 111000 00112222 34443333332 379999998765422 222111 12222322 4666666
Q ss_pred EeecCCCCCCcEEEEEecc
Q 017748 264 CKFDDDDDDRPWDLWVMKE 282 (366)
Q Consensus 264 ~~~~~~~~~~~l~iW~l~~ 282 (366)
+..+. .+.+|-+..
T Consensus 252 ~s~D~-----~v~vwd~~~ 265 (410)
T 1vyh_C 252 CSNDQ-----TVRVWVVAT 265 (410)
T ss_dssp EETTS-----CEEEEETTT
T ss_pred EcCCC-----eEEEEECCC
Confidence 66554 899998765
No 257
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=30.78 E-value=3.6e+02 Score=25.74 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=60.9
Q ss_pred EEEEEECCCc--eeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCC-CCCceEEEEEeccCCC
Q 017748 224 IIIAFDLKSE--EFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYG-VNDSWTKLATLLNVGG 300 (366)
Q Consensus 224 ~i~~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~ 300 (366)
.|...|+.+. ++..+..+... ....+..-+++|++....+.. ...|+.++-.. ....|..+ ++....
T Consensus 260 ~i~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~g~~l~~~t~~~~~----~~~l~~~d~~~~~~~~~~~l--~~~~~~ 329 (693)
T 3iuj_A 260 RLYVKDLSQENAPLLTVQGDLDA----DVSLVDNKGSTLYLLTNRDAP----NRRLVTVDAANPGPAHWRDL--IPERQQ 329 (693)
T ss_dssp EEEEEETTSTTCCCEEEECSSSS----CEEEEEEETTEEEEEECTTCT----TCEEEEEETTSCCGGGCEEE--ECCCSS
T ss_pred EEEEEECCCCCCceEEEeCCCCc----eEEEEeccCCEEEEEECCCCC----CCEEEEEeCCCCCccccEEE--ecCCCC
Confidence 6778888765 56666444332 122244557888887664432 45666665432 23458753 333221
Q ss_pred ceeeEEEEecCCcEEEEEeeCC---eEEEEeCCCCeEEEeeeec
Q 017748 301 GNVKPLVYSRSEDKVLLHAVRG---DLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 301 ~~~~~~~~~~~g~~i~~~~~~~---~~~~yd~~t~~~~~v~~~~ 341 (366)
. . .+..+++.|++....+ ++..+|++++..+.+ .+.
T Consensus 330 --~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l-~~p 368 (693)
T 3iuj_A 330 --V-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV-ALP 368 (693)
T ss_dssp --C-E-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE-CCS
T ss_pred --E-E-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe-ecC
Confidence 1 2 6666677787775433 599999998888777 554
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=30.57 E-value=3.5e+02 Score=25.55 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=35.0
Q ss_pred cEEEEEEecCC--cEEEcc-CCCcceecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCc--eeeee
Q 017748 174 TEVAVFSLRVN--SWRRIQ-DFPYFWVTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSE--EFYQV 238 (366)
Q Consensus 174 ~~~~vyss~t~--~W~~~~-~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~--~~~~i 238 (366)
..+..++..|+ .|+.-. ...........++..+|.+|.-....+ ......|.+||.++. .|+.-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEc
Confidence 34566776555 598532 211111234456778999886543110 001138999999865 45543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=30.39 E-value=92 Score=29.44 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=23.8
Q ss_pred CcEEEEEeeCCeEEEEeCCCCeEEEeeeec
Q 017748 312 EDKVLLHAVRGDLCWYDLERHRVRSIVEID 341 (366)
Q Consensus 312 g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~ 341 (366)
++.|++...++.++++|.+|++..+-.++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 348988888889999999999977664443
No 260
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=30.07 E-value=2.6e+02 Score=23.93 Aligned_cols=145 Identities=3% Similarity=-0.118 Sum_probs=69.3
Q ss_pred ccEEEEEEecCCcEEEccCCCcceecCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCce
Q 017748 173 YTEVAVFSLRVNSWRRIQDFPYFWVTGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYY 250 (366)
Q Consensus 173 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~ 250 (366)
...+.+++..++.-...-..... -..+.+ +|.+...+..+ .+..++..+............ ....
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~----V~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~~~~--~~~v 222 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETRGE----VKDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTDFDK--NWSL 222 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECSSC----CCEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECCCCT--TEEE
T ss_pred CCEEEEeECCCCcEEEEeCCCCc----eEEEEEccCCceEEeccce-------eEEEEEeccCcceeeeecCCC--CCCE
Confidence 34677777777654322111100 112222 45544443322 467777776654333221111 0112
Q ss_pred EEEEE-ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEE--EEEeccCCCceeeEEEEecCCcEEEEEeeCCeEEEE
Q 017748 251 ILLEA-LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTK--LATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDLCWY 327 (366)
Q Consensus 251 ~~l~~-~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~y 327 (366)
..+.. -+|+..+....+... .+.+|..+... ..... ...+.... ....-+++.++|..|.....++.+..|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~---~~~i~~~~~~~--~~~~~~~~~~~~~~~-~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGK---GIVLTKISIKS--GNTSVLRSKQVTNRF-KGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSC---CEEEEEEEEET--TEEEEEEEEEEESSC-SCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCEEEEEecCCcc---eeEEeeccccc--ceecceeeeeecCCC-CCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 22222 267766666544321 34444443321 11222 22332211 114456777888666666777789999
Q ss_pred eCCCCeEEE
Q 017748 328 DLERHRVRS 336 (366)
Q Consensus 328 d~~t~~~~~ 336 (366)
|.++++...
T Consensus 297 d~~~~~~~~ 305 (365)
T 4h5i_A 297 KLKDLSMSK 305 (365)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCcEEE
Confidence 999988543
No 261
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=29.12 E-value=2e+02 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=28.9
Q ss_pred eeEEEEe--cCCcEEEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 303 VKPLVYS--RSEDKVLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 303 ~~~~~~~--~~g~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
--|+++. ..-|.||+.+..+.++.||++|++.-..-.|.+
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~ 301 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 301 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCC
Confidence 4455544 333599999999999999999999765535543
No 262
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=28.36 E-value=2.8e+02 Score=23.61 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred cEEEEEECCCceeee-eCCCCccCCCCceEEEEE--E-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC
Q 017748 223 DIIIAFDLKSEEFYQ-VPLPPIVGIEGYYILLEA--L-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV 298 (366)
Q Consensus 223 ~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~--~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 298 (366)
..|..+|+++.+... +..... ....+.. . +|.+.+.+..+. .+.+|-+... +- +..+...
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~----~~--~~~~~~h 239 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGA-----DVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSG----QC--VQAFETH 239 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-----CEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTC----CE--EEEECCC
T ss_pred CcEEEEeCCCCeEEEEEcCCCC-----CeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCC----cE--EEEecCC
Confidence 378889998765432 222211 1112222 1 356666666555 8999988752 12 2223211
Q ss_pred CCceeeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 299 GGGNVKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 299 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
. ....-+++.++++.++....++.+..||+++++-..+
T Consensus 240 ~-~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 240 E-SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp S-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred C-CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 1 1144566677776666677777899999998865433
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=27.54 E-value=4.2e+02 Score=25.51 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=50.3
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCcee
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNV 303 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 303 (366)
.+..||..+++|.. |... .......+...+|.|++.+. . .+..++.. ..+......... .+...
T Consensus 83 Gl~~yd~~~~~f~~---~~~~-~~~~i~~i~~~~g~lWigt~--------~-Gl~~~~~~--~~~~~~~~~~~~-~l~~~ 146 (758)
T 3ott_A 83 GILVYNYRADRYEQ---PETD-FPTDVRTMALQGDTLWLGAL--------N-GLYTYQLQ--SRKLTSFDTRRN-GLPNN 146 (758)
T ss_dssp EEEEEETTTTEECC---CSCC-CCSCEEEEEEETTEEEEEET--------T-EEEEEETT--TCCEEEECHHHH-CCSCS
T ss_pred CeEEEeCCCCEEEC---cccC-CCceEEEEEecCCcEEEEcC--------C-cceeEeCC--CCeEEEeccCCC-CcCCC
Confidence 68999999998865 2111 01112234445788887643 2 24444432 123332211111 11112
Q ss_pred eEEEEecC-CcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 304 KPLVYSRS-EDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 304 ~~~~~~~~-g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
.+..+..+ ++.|.+... ..++.||+++++++.+
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~ 180 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGI 180 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEe
Confidence 23333332 337777765 4599999999988765
No 264
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=26.08 E-value=3.3e+02 Score=23.72 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=33.3
Q ss_pred cEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEe--eCCeEEEEeCCCCeEE
Q 017748 274 PWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHA--VRGDLCWYDLERHRVR 335 (366)
Q Consensus 274 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~--~~~~~~~yd~~t~~~~ 335 (366)
.+.+|-+... .....+..... ..-..+..+++.++... .++.+.+||..+++..
T Consensus 302 ~I~iwd~~t~------~~~~~~~~~~~--v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 302 HIRIWNVCSG------ACLSAVDAHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp EEEEEETTTT------EEEEEEECSSC--EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEEeCCcc------ccceeeccccc--eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 8999977652 23333433222 33445566676777765 3567999999887643
No 265
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=25.84 E-value=1.5e+02 Score=21.40 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=27.4
Q ss_pred ccEEEEEecccc-ceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEE
Q 017748 117 RNIMLLLNPLTK-RHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKIL 165 (366)
Q Consensus 117 ~~~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~ 165 (366)
-.++ +.||.|+ .|...-.. .....+.+|+..+.|+|+.+.
T Consensus 11 A~V~-~~D~~tk~~W~p~g~~--------~~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVF-QIDPNTKKNWVPTSKH--------AVTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEE-EECTTTSCSEEESCSS--------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEE-EEcCCCCCceEeCCCC--------ceEEEEEEcCCCCEEEEEEcc
Confidence 3477 8999996 88643221 134557778888889998854
No 266
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=25.80 E-value=2.7e+02 Score=25.19 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=46.2
Q ss_pred eEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECCeEEEEEeecC
Q 017748 203 VFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGGCLCLLCKFDD 268 (366)
Q Consensus 203 v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~l~~~~~~ 268 (366)
-+-+|++|-.+.......--..+..-+..-+.|+.+.+|... ++ ...-.+..++.|+++..+..
T Consensus 345 kyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nv-Hh-tnlPFakvgD~l~mFgsERA 408 (670)
T 3ju4_A 345 KYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNV-HH-TTLPFAKVGDDLIMFGSERA 408 (670)
T ss_dssp EEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCC-CS-SCCCEEEETTEEEEEEECSS
T ss_pred hhhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccc-cc-cCCCcceeCCEEEEEecccc
Confidence 367899999987654322123788888888999999999776 22 23345777999999888653
No 267
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=25.69 E-value=4.3e+02 Score=25.01 Aligned_cols=202 Identities=8% Similarity=-0.054 Sum_probs=92.2
Q ss_pred cEEEEEecccccee---ecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEE----ecCCcEEEcc
Q 017748 118 NIMLLLNPLTKRHR---VLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFS----LRVNSWRRIQ 190 (366)
Q Consensus 118 ~~~~V~NP~t~~~~---~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vys----s~t~~W~~~~ 190 (366)
.+. ++|..+++.. .+..+...... ......+.+.|. + +++.... ........+.+++ ..++.++.+.
T Consensus 225 ~l~-~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD-~--~~~~~~~-~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 225 RIF-IIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTD-E--RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp EEE-EEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSS-S--EEEEEEE-ESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred EEE-EEECCCCCccceeEccCCccCCCC-cceEEEeEEeCC-C--eEEEEEe-ccccCeEEEEEEcccCCCCCCceEEEE
Confidence 678 9999988752 54432110000 122334555554 2 3333322 2223345677888 6666655432
Q ss_pred C----CCcceec---CCcceE-ECCc-EEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEEEEECC-eE
Q 017748 191 D----FPYFWVT---GTCSVF-VNGA-LHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILLEALGG-CL 260 (366)
Q Consensus 191 ~----~~~~~~~---~~~~v~-~~G~-lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g-~L 260 (366)
. -...... .....+ -+|. ++++.....+ ...|..+|+.+.+...+.-.... ....... +| .|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~~~~----v~~~~~~-d~~~i 370 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITSGKWE----AINIFRV-TQDSL 370 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSCSSSC----EEEEEEE-CSSEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecccCceE----EEEEEEE-eCCEE
Confidence 1 1001001 001222 3565 4443333322 24788899987764443211110 1111222 55 45
Q ss_pred EEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEecc--C-CCceeeEEEEecCCcEEEEEeeC---CeEEEEeCCCCeE
Q 017748 261 CLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLN--V-GGGNVKPLVYSRSEDKVLLHAVR---GDLCWYDLERHRV 334 (366)
Q Consensus 261 ~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~-~~~~~~~~~~~~~g~~i~~~~~~---~~~~~yd~~t~~~ 334 (366)
++..... .+......+|.++..+...+. ..+.. . .........+..+|+.+++...+ -.+..||+++++.
T Consensus 371 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 371 FYSSNEF-EEYPGRRNIYRISIGSYPPSK---KCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp EEEESCG-GGCTTCBEEEEEECSSSSCCE---EESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred EEEEecC-CCCCceEEEEEEeCCCCCCCc---eeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 5444330 001127889998753221111 22221 0 00113345566777666665432 2478899988875
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
..+
T Consensus 447 ~~~ 449 (719)
T 1z68_A 447 IKI 449 (719)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 268
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=25.21 E-value=3.2e+02 Score=23.39 Aligned_cols=101 Identities=8% Similarity=0.097 Sum_probs=54.7
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CC-eEEEEEeecCC--C--CCCcEEEEEeccCCCCCceEEEEEecc
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDDD--D--DDRPWDLWVMKEYGVNDSWTKLATLLN 297 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~~--~--~~~~l~iW~l~~~~~~~~W~~~~~i~~ 297 (366)
.|..+|.++.+... .+|... .+.++.. +| .||++...... . ....+.+|-.+ ....+.+++.
T Consensus 32 ~v~v~D~~t~~~~~-~i~~g~-----~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~------t~~~~~~i~~ 99 (361)
T 2oiz_A 32 RVHVYDYTNGKFLG-MVPTAF-----NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD------KLTFEKEISL 99 (361)
T ss_dssp EEEEEETTTCCEEE-EEECCE-----EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT------TCCEEEEEEE
T ss_pred eEEEEECCCCeEEE-EecCCC-----CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECc------CCcEEEEEEc
Confidence 78999988776532 233332 2244444 34 56666542110 0 01146666433 2344455543
Q ss_pred CC--C---ceeeEEEEecCCcEEEEEee--CCeEEEEeCCCCeEEE
Q 017748 298 VG--G---GNVKPLVYSRSEDKVLLHAV--RGDLCWYDLERHRVRS 336 (366)
Q Consensus 298 ~~--~---~~~~~~~~~~~g~~i~~~~~--~~~~~~yd~~t~~~~~ 336 (366)
.. . ....-+++.++|+.++.... ++.+.++|+++++...
T Consensus 100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 21 0 11334677888877777654 3569999999997643
No 269
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=24.55 E-value=3.4e+02 Score=23.42 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcE-EEEEeeCCeEEEEeCCCCeEE
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDK-VLLHAVRGDLCWYDLERHRVR 335 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~-i~~~~~~~~~~~yd~~t~~~~ 335 (366)
+|++.+-+..+. .+.||-+...+ ........... ..-+++.+++.. ++....++.+..||+++++..
T Consensus 155 d~~~las~s~D~-----tv~~Wd~~~~~-----~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 155 AEQVIASVGDDC-----TLIIWRLTDEG-----PILAGYPLSSP--GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp EEEEEEEEETTS-----EEEEEEEETTE-----EEEEEEECSSC--EEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred CCCEEEEEECCC-----eEEEEECCCCc-----eeeeecCCCCC--cEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 466666566554 89999987631 11122222221 334566666644 444456677999999988754
No 270
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=24.42 E-value=2.2e+02 Score=26.98 Aligned_cols=61 Identities=8% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC------CceeeEEEEecCCcEEEEEeeCCeEEEEeCC
Q 017748 257 GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG------GGNVKPLVYSRSEDKVLLHAVRGDLCWYDLE 330 (366)
Q Consensus 257 ~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~------~~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~ 330 (366)
+|++..+...++ .+.||..+. .+..+. .. - .+-+++.++|+.|.....++.+..||++
T Consensus 96 dG~~LAs~s~dg-----~V~iwd~~~--------~l~~l~-~~~~~~~~s--v~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 96 IDDWMAVLSNNG-----NVSVFKDNK--------MLTNLD-SKGNLSSRT--YHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SSSCEEEEETTS-----CEEEEETTE--------EEEECC-CSSCSTTTC--EEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCEEEEEeCCC-----cEEEEeCCc--------eeeecc-CCCcccccc--EEEEEEcCCCCEEEEEcCCCEEEEEECC
Q ss_pred CCe
Q 017748 331 RHR 333 (366)
Q Consensus 331 t~~ 333 (366)
+++
T Consensus 160 ~~~ 162 (588)
T 2j04_A 160 KNS 162 (588)
T ss_dssp CCT
T ss_pred CCc
No 271
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=24.26 E-value=40 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=14.2
Q ss_pred EEEEeeCCeEEEEeCCCCeEEEeeeecC
Q 017748 315 VLLHAVRGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 315 i~~~~~~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
|+.....-.++.||.++++|++. +++|
T Consensus 26 Il~~a~~v~vY~f~~~~~~W~K~-~iEG 52 (127)
T 2qkl_A 26 IIDIASHVAVYQFDVGSQKWLKT-SIEG 52 (127)
T ss_dssp EEEEEEEEEEECC------CCEE-EEEE
T ss_pred HhccCCeEEEEEecCCCCceEEc-CcEE
Confidence 44444333477778889999999 9988
No 272
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=24.20 E-value=4.9e+02 Score=25.07 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=96.7
Q ss_pred EEeeeceeEEeecCCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEe
Q 017748 102 IIGSCNGLLALEDSRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSL 181 (366)
Q Consensus 102 ~~~s~~Gll~~~~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss 181 (366)
++...+|.|-+... ..++ .+|+.|.++.. |.... . . ....+. +. +. . +.+.. ...+..|+.
T Consensus 68 i~~d~~g~lWigT~-~Gl~-~yd~~~~~f~~-~~~~~--~--~-~i~~i~-~~--~g-~-lWigt------~~Gl~~~~~ 128 (758)
T 3ott_A 68 GVIIDNTYLYMGTD-NGIL-VYNYRADRYEQ-PETDF--P--T-DVRTMA-LQ--GD-T-LWLGA------LNGLYTYQL 128 (758)
T ss_dssp EEEETTTEEEEEET-TEEE-EEETTTTEECC-CSCCC--C--S-CEEEEE-EE--TT-E-EEEEE------TTEEEEEET
T ss_pred EEEcCCCcEEEEeC-CCeE-EEeCCCCEEEC-cccCC--C--c-eEEEEE-ec--CC-c-EEEEc------CCcceeEeC
Confidence 34455777766543 4578 89999987764 21111 1 1 111221 11 12 2 22222 225778888
Q ss_pred cCCcEEEccCCCccee-cCCcceEE--CCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCC-CCceEEEEEE-
Q 017748 182 RVNSWRRIQDFPYFWV-TGTCSVFV--NGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGI-EGYYILLEAL- 256 (366)
Q Consensus 182 ~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~-~~~~~~l~~~- 256 (366)
.++..+.......... ..-..++. +|.+ |++... .+..||..++++..+.+|..... ......+.+-
T Consensus 129 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-------Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 200 (758)
T 3ott_A 129 QSRKLTSFDTRRNGLPNNTIYSIIRTKDNQI-YVGTYN-------GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT 200 (758)
T ss_dssp TTCCEEEECHHHHCCSCSCEEEEEECTTCCE-EEEETT-------EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred CCCeEEEeccCCCCcCCCeEEEEEEcCCCCE-EEEeCC-------CHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence 8887776521110000 11113333 3554 555433 69999999999988776643211 1122344444
Q ss_pred CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecC-CcEEEEEeeCCeEEEEeCCCCeE
Q 017748 257 GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRS-EDKVLLHAVRGDLCWYDLERHRV 334 (366)
Q Consensus 257 ~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~yd~~t~~~ 334 (366)
+| .|++.+. . .+..++.. ..++.....++. ..+.++..+ .+.|.+... ..++.||.+++++
T Consensus 201 ~~~~lWigt~-~--------Gl~~~~~~--~~~~~~~~~l~~-----~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 201 TRQCVWIGTE-G--------YLFQYFPS--TGQIKQTEAFHN-----NSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp TTTEEEEEEE-E--------EEEEEETT--TTEEEEEEEEEE-----EEEEEEEECTTCCEEEEET-TEEEEECCTTSCC
T ss_pred CCCEEEEEEC-C--------CCeEEcCC--CCeEEeccCCCC-----CeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE
Confidence 23 4676542 1 24444432 233544333321 223333322 237777774 4699999999887
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
+.+
T Consensus 264 ~~~ 266 (758)
T 3ott_A 264 QHI 266 (758)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 273
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=22.79 E-value=3.9e+02 Score=23.40 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=26.9
Q ss_pred CeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccC
Q 017748 258 GCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNV 298 (366)
Q Consensus 258 g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 298 (366)
.++|+++..+. .+.+|...+. .+|+++++....
T Consensus 53 ~~~~~~~~~~~-----~v~lw~~~~~---~~~~~~~~~~~~ 85 (356)
T 2w18_A 53 KEPCIITACED-----VVSLWKALDA---WQWEKLYTWHFA 85 (356)
T ss_dssp CEEEEEEEESS-----EEEEEEESSS---SBEEEEEEEECC
T ss_pred CccEEEEeccc-----eEEEcccCCC---ccceeeEEEecc
Confidence 57899999877 8999999883 579999987643
No 274
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=22.65 E-value=4.7e+02 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=24.0
Q ss_pred EEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 305 PLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 305 ~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
-+++.++|..|.....++.+..||+++++++.+
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 355667775666667777899999998877544
No 275
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=22.32 E-value=3.9e+02 Score=23.34 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEEEEEecCCcEEEccCCCcceecCCcceEECCcEEEEEeeCCCC--CCCcEEEEEECCCceeeee-CC--C--CccCCC
Q 017748 175 EVAVFSLRVNSWRRIQDFPYFWVTGTCSVFVNGALHWTAALNQDA--DRNDIIIAFDLKSEEFYQV-PL--P--PIVGIE 247 (366)
Q Consensus 175 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~--~~~~~i~~fD~~~~~~~~i-~l--P--~~~~~~ 247 (366)
.+.||++....=..++.-....-....+.-++|.-.=+..-.+.. .....++.+|+.+.++..+ .. | ... ..
T Consensus 51 gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~-~~ 129 (355)
T 3amr_A 51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI-NE 129 (355)
T ss_dssp EEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC-SS
T ss_pred CEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC-CC
Q ss_pred CceEEE--EEECCeEEEEEeecCCCCCCcEEEEEeccCCCC-CceEEEEEeccCCCceeeEEEEecCCcEEEEEeeCCeE
Q 017748 248 GYYILL--EALGGCLCLLCKFDDDDDDRPWDLWVMKEYGVN-DSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVRGDL 324 (366)
Q Consensus 248 ~~~~~l--~~~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 324 (366)
-+..++ ....|+++++....+. .+..|.+.+.+.. .+=.++.+++...- ..-+.+....+.||+.-.+..+
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G----~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~EgcvvDd~~g~Lyv~eEd~GI 203 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEG----EFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGRLYIAEEDEAI 203 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSS----EEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEEEETTTTEEEEEETTTEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCC----eEEEEEEEeCCCCcccceEEEEecCCCC--cceEEEcCCCCeEEEecccceE
Q ss_pred EEEeCC-----CCeE
Q 017748 325 CWYDLE-----RHRV 334 (366)
Q Consensus 325 ~~yd~~-----t~~~ 334 (366)
..||.+ +.+.
T Consensus 204 w~~da~p~~~~~~~~ 218 (355)
T 3amr_A 204 WKFSAEPDGGSNGTV 218 (355)
T ss_dssp EEEECSTTSCSCCEE
T ss_pred EEEeCCcCCCCCceE
No 276
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=21.97 E-value=4e+02 Score=23.22 Aligned_cols=189 Identities=10% Similarity=0.005 Sum_probs=87.7
Q ss_pred CCccEEEEEeccc--cceeecCCcCC-CCCCCCcceEEEeeecC-CCCeEEEEEEEEcCCCCccEEEEEEecC--CcEEE
Q 017748 115 SRRNIMLLLNPLT--KRHRVLPTFYR-DLSRCVPSLEGFGFDVG-SGDFKLVKILAFGKPMNYTEVAVFSLRV--NSWRR 188 (366)
Q Consensus 115 ~~~~~~~V~NP~t--~~~~~LP~~~~-~~~~~~~~~~~lg~d~~-~~~ykvv~~~~~~~~~~~~~~~vyss~t--~~W~~ 188 (366)
....++ +++|.+ .+..+|..... .... .+...++.+.+. .+...++++.. . .....+++|.... +..+.
T Consensus 81 ~~G~I~-~~d~~~~~~~~~~l~~~g~~~~~~-~f~PhGi~~~~d~dg~~~L~Vvnh-~--~~~s~ielf~~d~~~~~~~~ 155 (355)
T 3sre_A 81 KSGKIL-LMDLNEKEPAVSELEIIGNTLDIS-SFNPHGISTFIDDDNTVYLLVVNH-P--GSSSTVEVFKFQEEEKSLLH 155 (355)
T ss_dssp -CCEEE-EEETTSSSCCEEECEEECSSCCGG-GCCEEEEEEEECTTCCEEEEEEEC-S--TTCCEEEEEEEETTTTEEEE
T ss_pred CCCeEE-EEecCCCCCceEEEEccCCCCCcC-ceeeeeeEEEECCCCcEEEEEEEC-C--CCCCeEEEEEEECCCCEEEE
Confidence 355688 999983 34445543221 1111 356677777664 34555555543 1 2345777777654 44443
Q ss_pred ccCCCccee-cCCcc-eEECCcEEEEEeeC-C----------CCCCCcEEEEEECCCceeeee----CCCCccCCCCceE
Q 017748 189 IQDFPYFWV-TGTCS-VFVNGALHWTAALN-Q----------DADRNDIIIAFDLKSEEFYQV----PLPPIVGIEGYYI 251 (366)
Q Consensus 189 ~~~~~~~~~-~~~~~-v~~~G~lYw~~~~~-~----------~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~ 251 (366)
+........ ..+.. +.-+|.+|.-.... . .......++.+|.. +.+.+ ..|..
T Consensus 156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNG-------- 225 (355)
T 3sre_A 156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANG-------- 225 (355)
T ss_dssp EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEE--------
T ss_pred EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCc--------
Confidence 332211111 11222 33456765543210 0 01123579999985 23222 23332
Q ss_pred EEEEE-CC-eEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEec-CCcEEEEE-eeC-CeEEE
Q 017748 252 LLEAL-GG-CLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSR-SEDKVLLH-AVR-GDLCW 326 (366)
Q Consensus 252 ~l~~~-~g-~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~~~-~~~-~~~~~ 326 (366)
++.. +| .||++..... .+..+.++.. ++......+... +...=+.+.. +| .+++. ..+ .+++.
T Consensus 226 -ia~spDg~~lYvadt~~~-----~I~~~~~~~~---g~l~~~~~~~~~--g~PDGi~vD~e~G-~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 226 -INISPDGKYVYIAELLAH-----KIHVYEKHAN---WTLTPLRVLSFD--TLVDNISVDPVTG-DLWVGCHPNGMRIFF 293 (355)
T ss_dssp -EEECTTSSEEEEEEGGGT-----EEEEEEECTT---SCEEEEEEEECS--SEEEEEEECTTTC-CEEEEEESCHHHHHS
T ss_pred -ceECCCCCEEEEEeCCCC-----eEEEEEECCC---CcEecCEEEeCC--CCCceEEEeCCCC-cEEEEecCCceEEEE
Confidence 2332 34 5666665443 5555555532 234444444321 1122334444 25 77773 323 34666
Q ss_pred EeCC
Q 017748 327 YDLE 330 (366)
Q Consensus 327 yd~~ 330 (366)
||++
T Consensus 294 ~~P~ 297 (355)
T 3sre_A 294 YDAE 297 (355)
T ss_dssp CCTT
T ss_pred ECCC
Confidence 6666
No 277
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=21.91 E-value=6e+02 Score=25.28 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=24.9
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEE
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRS 336 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~ 336 (366)
..-+++..+|..|+-...++.+..||+++++...
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 4446677788666666777789999999887543
No 278
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.91 E-value=36 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=13.7
Q ss_pred CCC--CCCCcHHHHHHHHcc
Q 017748 1 MET--SVQLPLDLIVDILIR 18 (366)
Q Consensus 1 ~~~--~~~LP~dll~~IL~r 18 (366)
|+. +..||.||-..|++-
T Consensus 4 M~~~wL~~LP~~Lq~kV~aI 23 (70)
T 2lh0_A 4 MSKLFLDELPESLSRKIGTV 23 (70)
T ss_dssp SSCCGGGGSCHHHHHHHHHH
T ss_pred chHHHHHhCCHHHHHHHHHH
Confidence 555 678999999887653
No 279
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.73 E-value=4.2e+02 Score=23.41 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=57.1
Q ss_pred cEEEEEECCCcee-eeeCCCCccCCCCceEEEEEE-CC-eEEEEEeecC--CCC--CCcEEEEEeccCCCCCceEEEEEe
Q 017748 223 DIIIAFDLKSEEF-YQVPLPPIVGIEGYYILLEAL-GG-CLCLLCKFDD--DDD--DRPWDLWVMKEYGVNDSWTKLATL 295 (366)
Q Consensus 223 ~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-~g-~L~l~~~~~~--~~~--~~~l~iW~l~~~~~~~~W~~~~~i 295 (366)
..|.++|..+.+. ..|+.... +.+... +| .||+...... ..+ ...+.+ +|-. .-..+.+|
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG~~-------P~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv--iD~~----t~~v~~~I 125 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGGFL-------PNPVVADDGSFIAHASTVFSRIARGERTDYVEV--FDPV----TLLPTADI 125 (386)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-------CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE--ECTT----TCCEEEEE
T ss_pred CEEEEEECCCCeEEEEEECCCC-------CcEEECCCCCEEEEEcccccccccCCCCCEEEE--EECC----CCeEEEEE
Confidence 4899999998765 34433221 124443 34 5666653210 000 003444 4431 12334455
Q ss_pred ccCC------CceeeEEEEecCCcEEEEEee--CCeEEEEeCCCCeEEEeeeecC
Q 017748 296 LNVG------GGNVKPLVYSRSEDKVLLHAV--RGDLCWYDLERHRVRSIVEIDD 342 (366)
Q Consensus 296 ~~~~------~~~~~~~~~~~~g~~i~~~~~--~~~~~~yd~~t~~~~~v~~~~~ 342 (366)
+... .....-+++..+|..+++... ++.+.+.|+++++...-..+.|
T Consensus 126 ~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 126 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp EETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 4321 001344778889977887753 4569999999999754335543
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=21.12 E-value=3.5e+02 Score=22.33 Aligned_cols=194 Identities=9% Similarity=-0.011 Sum_probs=91.5
Q ss_pred ceeEEeec-CCccEEEEEeccccceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCc
Q 017748 107 NGLLALED-SRRNIMLLLNPLTKRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNS 185 (366)
Q Consensus 107 ~Gll~~~~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~ 185 (366)
+|-+.+.+ ...+++ .+||.++....++.. ....++.+++.. . ++.... . .....+..|+..++.
T Consensus 42 ~g~lyv~d~~~~~I~-~~d~~g~~~~~~~~~--------~~p~gia~~~dG-~--l~vad~-~--~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIV-SITPDGNQQIHATVE--------GKVSGLAFTSNG-D--LVATGW-N--ADSIPVVSLVKSDGT 106 (306)
T ss_dssp TSCEEEEETTTTEEE-EECTTCCEEEEEECS--------SEEEEEEECTTS-C--EEEEEE-C--TTSCEEEEEECTTSC
T ss_pred CCCEEEEeCCCCeEE-EECCCCceEEEEeCC--------CCceeEEEcCCC-c--EEEEec-c--CCcceEEEEcCCCCe
Confidence 55554444 456777 889887654433322 134567777653 3 222211 1 112246667777777
Q ss_pred EEEccCCCcceecCCcce--EECCcEEEEEeeCCCCCCCcEEEEEECCCceeeee------C--CCCccCCCCceEEEEE
Q 017748 186 WRRIQDFPYFWVTGTCSV--FVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQV------P--LPPIVGIEGYYILLEA 255 (366)
Q Consensus 186 W~~~~~~~~~~~~~~~~v--~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i------~--lP~~~~~~~~~~~l~~ 255 (366)
.+.+...+... ...++ ..+|.+|. ..... ..|..+|..+...... . .+... ....--|..
T Consensus 107 ~~~~~~~~~~~--~~~g~~~~~~~~~~v-~d~~~-----g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~--~~~pngis~ 176 (306)
T 2p4o_A 107 VETLLTLPDAI--FLNGITPLSDTQYLT-ADSYR-----GAIWLIDVVQPSGSIWLEHPMLARSNSESV--FPAANGLKR 176 (306)
T ss_dssp EEEEEECTTCS--CEEEEEESSSSEEEE-EETTT-----TEEEEEETTTTEEEEEEECGGGSCSSTTCC--SCSEEEEEE
T ss_pred EEEEEeCCCcc--ccCcccccCCCcEEE-EECCC-----CeEEEEeCCCCcEeEEEECCccccccccCC--CCcCCCcCc
Confidence 76654432211 11122 12344554 33221 3799999886432111 0 11111 011112333
Q ss_pred ECCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEee-CCeEEEEeCCCCeE
Q 017748 256 LGGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAV-RGDLCWYDLERHRV 334 (366)
Q Consensus 256 ~~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~yd~~t~~~ 334 (366)
-++.||++..... .+..+.++..+.-......... .. ..-+++..+| .|++... .+++..||++ ++.
T Consensus 177 dg~~lyv~d~~~~-----~I~~~~~~~~g~~~~~~~~~~~---~~--P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKM-----LLLRIPVDSTDKPGEPEIFVEQ---TN--IDDFAFDVEG-NLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp ETTEEEEEETTTT-----EEEEEEBCTTSCBCCCEEEEES---CC--CSSEEEBTTC-CEEEECBTTCCEEEECTT-CCE
T ss_pred CCCEEEEEeCCCC-----EEEEEEeCCCCCCCccEEEecc---CC--CCCeEECCCC-CEEEEeCCCCeEEEECCC-CCE
Confidence 4557887766433 5555544431111111111111 11 2335666677 7777654 4569999997 555
Q ss_pred EEe
Q 017748 335 RSI 337 (366)
Q Consensus 335 ~~v 337 (366)
..+
T Consensus 245 ~~~ 247 (306)
T 2p4o_A 245 TII 247 (306)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 281
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=21.02 E-value=4.7e+02 Score=23.69 Aligned_cols=96 Identities=8% Similarity=0.066 Sum_probs=52.6
Q ss_pred EEEEEECCCceeeeeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCCCce
Q 017748 224 IIIAFDLKSEEFYQVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVGGGN 302 (366)
Q Consensus 224 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 302 (366)
.|..+|...+....+..+.. ....+... ++++.+....+. .+.+|.++. . .+..+.... ..
T Consensus 408 ~v~~~~~~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~d~-----~v~~w~~~~----~---~~~~~~~~~-~~ 469 (577)
T 2ymu_A 408 TVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDDQTIASASDDK-----TVKLWNRNG----Q---LLQTLTGHS-SS 469 (577)
T ss_dssp EEEEECTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTS-----EEEEEETTS----C---EEEEEECCS-SC
T ss_pred EEEEEeCCCCEEEEecCCCC-----CeEEEEECCCCCEEEEEcCCC-----EEEEEECCC----C---EEEEEcCCC-CC
Confidence 67788866554444433222 12233333 455555554444 899997532 1 122332111 11
Q ss_pred eeEEEEecCCcEEEEEeeCCeEEEEeCCCCeEEEe
Q 017748 303 VKPLVYSRSEDKVLLHAVRGDLCWYDLERHRVRSI 337 (366)
Q Consensus 303 ~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~~~~~v 337 (366)
..-+++.+++..|.....++.+..||...+..+.+
T Consensus 470 v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence 44566777885566566677799999766655555
No 282
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=20.63 E-value=3.6e+02 Score=22.30 Aligned_cols=92 Identities=7% Similarity=-0.005 Sum_probs=50.8
Q ss_pred cEEEEEECCCceee-eeCCCCccCCCCceEEEEEE-CCeEEEEEeecCCCCCCcEEEEEeccCCCCCceEEEEEeccCC-
Q 017748 223 DIIIAFDLKSEEFY-QVPLPPIVGIEGYYILLEAL-GGCLCLLCKFDDDDDDRPWDLWVMKEYGVNDSWTKLATLLNVG- 299 (366)
Q Consensus 223 ~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~- 299 (366)
..|..+|+.+.+-. .+..+. ....+... +|.+. +..... .+.+|.++.. ..+..+....
T Consensus 218 g~i~iwd~~~~~~~~~~~~~~------~v~~~~~sp~~~~l-a~~~~~-----~i~v~~~~~~------~~~~~~~~~~~ 279 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLSAQD------EVFSLAFSPNRYWL-AAATAT-----GIKVFSLDPQ------YLVDDLRPEFA 279 (319)
T ss_dssp CEEEEEETTTTEEEEEEECCS------CEEEEEECSSSSEE-EEEETT-----EEEEEEETTE------EEEEEECCCCT
T ss_pred CeEEEEECCCCcEEEEecCCC------cEEEEEEcCCCCEE-EEEcCC-----CcEEEEeCcC------eeeeccCcccc
Confidence 37999999876542 223222 12233333 34443 334343 7889988752 1122222111
Q ss_pred -C-----ceeeEEEEecCCcEEEEEeeCCeEEEEeCCCC
Q 017748 300 -G-----GNVKPLVYSRSEDKVLLHAVRGDLCWYDLERH 332 (366)
Q Consensus 300 -~-----~~~~~~~~~~~g~~i~~~~~~~~~~~yd~~t~ 332 (366)
. ....-+++.++|..|+....++.+..||+.|.
T Consensus 280 ~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 0 11334667788866766777778999998765
No 283
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=20.13 E-value=5.6e+02 Score=24.26 Aligned_cols=193 Identities=9% Similarity=0.072 Sum_probs=0.0
Q ss_pred cEEEEEeccc-cceeecCCcCCCCCCCCcceEEEeeecCCCCeEEEEEEEEcCCCCccEEEEEEecCCcEEEccCCCcce
Q 017748 118 NIMLLLNPLT-KRHRVLPTFYRDLSRCVPSLEGFGFDVGSGDFKLVKILAFGKPMNYTEVAVFSLRVNSWRRIQDFPYFW 196 (366)
Q Consensus 118 ~~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 196 (366)
.++ ++|..+ ++...+...... ......+.+ ..+++-++... ........+.+++..++..+.+.......
T Consensus 264 ~l~-~~d~~~~~~~~~~~~~~~~----~~~~~~~~~--pDg~~l~~~~~--~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 264 KLG-VISPAEQAQTQWIDLGKEQ----DIYLARVNW--RDPQHLSFQRQ--SRDQKKLDLVEVTLASNQQRVLAHETSPT 334 (741)
T ss_dssp EEE-EECSSTTCCCEEECCCSCS----SEEEEEEEE--EETTEEEEEEE--ETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred EEE-EEECCCCCceEEecCCCCc----ceEEEEEEe--CCCCEEEEEEe--cccCCeEEEEEEECCCCceEEEEEcCCCC
Q ss_pred ---ecCCcceEECCcEEEEEeeCCCCCCCcEEEEEECCCceeeeeCCCCccCCCCceEEE-EEECCeEEEEEeecCCCCC
Q 017748 197 ---VTGTCSVFVNGALHWTAALNQDADRNDIIIAFDLKSEEFYQVPLPPIVGIEGYYILL-EALGGCLCLLCKFDDDDDD 272 (366)
Q Consensus 197 ---~~~~~~v~~~G~lYw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~ 272 (366)
....-...-+|.+++.+...... .|..+|.... ...+.-.... ....+ ..-+|+..++....+ ..
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~----~l~~~~~~~~-~~~l~~~~~~----v~~~~~~s~dg~~l~~~~~~~--~~ 403 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQ----HLYRIDSKGK-AAALTHGNWS----VDELLAVDEKAGLAYFRAGIE--SA 403 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSC----EEEEECSSSC-EEESCCSSSC----EEEEEEEETTTTEEEEEECSS--CT
T ss_pred cCCcCCceEECCCCeEEEEecCCCcc----EEEEEcCCCC-eeeeeecceE----EEeEeEEeCCCCEEEEEEeCC--CC
Q ss_pred CcEEEEEeccCCCCCceEEEEEeccCCCceeeEEEEecCCcEEEEEeeC----CeEEEEeCCCCeEEEe
Q 017748 273 RPWDLWVMKEYGVNDSWTKLATLLNVGGGNVKPLVYSRSEDKVLLHAVR----GDLCWYDLERHRVRSI 337 (366)
Q Consensus 273 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~~~~~~----~~~~~yd~~t~~~~~v 337 (366)
..+.||.++..+ .....+..... ...+.+..+|+.+++...+ ..++.+|.+++..+.+
T Consensus 404 ~~~~l~~~~~~g-----~~~~~l~~~~~--~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l 465 (741)
T 2ecf_A 404 RESQIYAVPLQG-----GQPQRLSKAPG--MHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATL 465 (741)
T ss_dssp TCBEEEEEETTC-----CCCEECCCSCS--EEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECS
T ss_pred ceEEEEEEEcCC-----CCeeecccCCC--ceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEe
Done!