BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017751
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 30/317 (9%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKR 108
S +TV++TG+ G +GR L +LQ H+V L R K PGK R
Sbjct: 146 SPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK-----PGK-------------R 187
Query: 109 FFPGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINE 168
F+ + A D + G+ +V+LAG PI R++ K+ I+ESR+ T + +L+ E
Sbjct: 188 FWDPLNPAS-----DLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAE 242
Query: 169 SPEGVRPSVLVSATALGYYGTSE-TEVFDESSPSGNDYLAEVCREWE-GTALKVNKDVRL 226
S + + +SA+A+G+YG E+ E S SG+D+LAEVCR+WE TA + R+
Sbjct: 243 S---TQCTTXISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAPASDAGKRV 299
Query: 227 ALIRIGIVLGKDGGALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYR 286
A IR G+ L GG L + LF GG G G WFSWI +DD+ ++ Y A+ +
Sbjct: 300 AFIRTGVALSGRGGXLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQIS 359
Query: 287 GVINGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEFALKAVLG-EGA-FVVLEGQRVVPAR 344
G IN APNPV A+ L RP+++ +P K +LG +GA + L QR PA
Sbjct: 360 GPINAVAPNPVSNADXTKILATSXHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAA 419
Query: 345 AKELGFPFKYRYVKDAL 361
+ L F+Y + A+
Sbjct: 420 LENLSHTFRYTDIGAAI 436
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 156/317 (49%), Gaps = 33/317 (10%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFFPG 112
V V G TGFIG L Q L A H+V +++R PG LA+
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRK--------PGPGRITWDELAA-------- 46
Query: 113 VMIAEEPQWRDCIQGSTAVVNLAGTPIGT---RWSSEIKKEIKESRIRVTSKVVDLINES 169
+ A VNLAG I RW+ +KE+ SR+ T + I ++
Sbjct: 47 ----------SGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKA 96
Query: 170 PEGVRPSVLVSATALGYYGTSETEVFDESSPSGN-DYLAEVCREWEGTALKVNKDVRLAL 228
P+ + VLV T + YY S T +DE SP G+ D+ + + +WE A R +
Sbjct: 97 PQPPKAWVLV--TGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVV 154
Query: 229 IRIGIVLGKDGGALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYRGV 288
+R G+VLG+ GGA + F + GGP+GSG Q+F WIH+ D+ ++ AL GV
Sbjct: 155 VRSGVVLGRGGGAXGHXLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGV 214
Query: 289 INGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEFALKAVLG-EGAFVVLEGQRVVPARAKE 347
+NG AP+ AE G LGR +++P+P ++AV G + A +LEGQ+V+P R
Sbjct: 215 LNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIXLLEGQKVIPRRTLA 274
Query: 348 LGFPFKYRYVKDALKAI 364
G+ + + + ALK I
Sbjct: 275 TGYQYSFPELGAALKEI 291
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 33/256 (12%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFFP 111
TV VTGA+GFIG LV RL + VR R + + +V L K
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK---------KVKHLLDLPKAETH 57
Query: 112 GVM----IAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLIN 167
+ +A+E + + I+G T V ++A TP+ S + + E+ + I ++
Sbjct: 58 LTLWKADLADEGSFDEAIKGCTGVFHVA-TPMDFE-SKDPENEVIKPTIEGMLGIMKSC- 114
Query: 168 ESPEGVRPSVLVSATALGYYGTSETEVFDESSPSGNDYL-AEVCREW---------EGTA 217
+ + VR V S+ + V+DES S ++ A+ W E A
Sbjct: 115 AAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAA 174
Query: 218 LKVNKDVRLALIRIGIVLGKDGGALAKMIPLFMMFAGGPLGSGQQWFS------WIHLDD 271
K K+ + I I L G + +P ++ A P+ + +S ++HLDD
Sbjct: 175 WKYAKENNIDFITIIPTLVV-GPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDD 233
Query: 272 IVNLIYEALSNPSYRG 287
+ N NP G
Sbjct: 234 LCNAHIYLFENPKAEG 249
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 111/273 (40%), Gaps = 45/273 (16%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFFPG 112
+ VTG GFIG +V +L N V + S E + N RL +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV------NEAARLVKAD------ 51
Query: 113 VMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEG 172
+ A++ +D ++G+ V ++A P R +E EI + + T ++++ + ++ G
Sbjct: 52 -LAADD--IKDYLKGAEEVWHIAANP-DVRIGAENPDEIYRNNVLATYRLLEAMRKA--G 105
Query: 173 VRPSVLVSATALGYYGTSETEVFDESSPSGNDYLAEVCREWEGTALKVNK---------D 223
V V S + + YG ++ P+ DY + + L D
Sbjct: 106 VSRIVFTSTSTV--YGEAKV------IPTPEDYPTHPISLYGASKLACEALIESYCHTFD 157
Query: 224 VRLALIRIGIVLGKDGGALAKMIPLFMMFAGGP-----LGSGQQWFSWIHLDDIVNLIYE 278
++ + R V+G+ + M P LG+G+Q S+I++ D V+ +
Sbjct: 158 MQAWIYRFANVIGRRS-THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLF 216
Query: 279 ALSNPSYRGVINGTAPNPV---RLAEM-CDHLG 307
L + N + + + R+AE+ C+ LG
Sbjct: 217 GLRGDERVNIFNIGSEDQIKVKRIAEIVCEELG 249
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 110/297 (37%), Gaps = 59/297 (19%)
Query: 44 HTQKASQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLA 103
H +K + + +TG GF+G L +L D H+V V+ F G+K N H +
Sbjct: 22 HXEK-DRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDN-------FFTGRKRNVEHWIG 73
Query: 104 SFNKRFFPGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVV 163
N ++ EP + + Q + +LA + K +K + I + +
Sbjct: 74 HENFELINHDVV--EPLYIEVDQ----IYHLASPASPPNYXYNPIKTLKTNTIGTLNXL- 126
Query: 164 DLINESPEGVRPSV---LVSATALGYYGTSETEVFDESSPSGNDYLAEV-------CREW 213
G+ V L+ A+ YG E P DY V C +
Sbjct: 127 --------GLAKRVGARLLLASTSEVYGDPEVH------PQSEDYWGHVNPIGPRACYD- 171
Query: 214 EGT--------ALKVNKDVRLALIRIGIVLG-----KDGGALAKMIPLFMMFAGGPL--- 257
EG A + V + + RI G DG ++ I G PL
Sbjct: 172 EGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRVVSNFI--LQALQGEPLTVY 229
Query: 258 GSGQQWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMCDHLGNVLGRPS 314
GSG Q ++ ++ D+VN + AL N + +N P + E + N++G S
Sbjct: 230 GSGSQTRAFQYVSDLVNGLV-ALXNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGS 285
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 106/282 (37%), Gaps = 52/282 (18%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFFPG 112
+ +TG GF+G L +L D H+V V+ F G+K N H + N
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDN-------FFTGRKRNVEHWIGHENFELINH 60
Query: 113 VMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEG 172
++ EP + + Q + +LA + K +K + I T ++ L G
Sbjct: 61 DVV--EPLYIEVDQ----IYHLASPASPPNYMYNPIKTLKTNTIG-TLNMLGLAKRV--G 111
Query: 173 VRPSVLVSATALGYYGTSETEVFDESSPSGNDYLAEV-------CREWEGT--------A 217
R L+ A+ YG E P DY V C + EG A
Sbjct: 112 AR---LLLASTSEVYGDPEVH------PQSEDYWGHVNPIGPRACYD-EGKRVAETMCYA 161
Query: 218 LKVNKDVRLALIRIGIVLG-----KDGGALAKMIPLFMMFAGGPL---GSGQQWFSWIHL 269
+ V + + RI G DG ++ I G PL GSG Q ++ ++
Sbjct: 162 YMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFI--LQALQGEPLTVYGSGSQTRAFQYV 219
Query: 270 DDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMCDHLGNVLG 311
D+VN + AL N + +N P + E + N++G
Sbjct: 220 SDLVNGLV-ALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVG 260
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRS 83
+ ++VTG TGF+G+ +V+ ++ D + +LTRS
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS 35
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSR 84
TV +TG G IGRRL +RL A+ + VLT R
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRR 293
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 43/243 (17%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFF 110
M + VTG GFIG V++L A + L + G + N A RF
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 111 PGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEI------KESRIRVTSKVVD 164
G + R+ ++G A+V+ A S + + I E+ ++ T ++
Sbjct: 61 HGDIRDAGLLARE-LRGVDAIVHFAA-------ESHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 165 LINESPEGVRPSVLVSATALGYYGTSETEVFDESSP-----------SGNDYLAEVCREW 213
++ GV V VS + YG+ ++ + ESSP +G+D +A
Sbjct: 113 CAVDA--GVGRVVHVSTNQV--YGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
Query: 214 EGTALKVNKDVRLALIRIGIVLGKDGGALAKMIPLFM--MFAGGPL---GSGQQWFSWIH 268
G +++ + G + K+IPLF+ + GG L G G W+H
Sbjct: 169 YGLDVRITR----CCNNYGPYQHPE-----KLIPLFVTNLLDGGTLPLYGDGANVREWVH 219
Query: 269 LDD 271
DD
Sbjct: 220 TDD 222
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 43/243 (17%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRFF 110
M + VTG GFIG V++L A + L + G + N A RF
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 111 PGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEI------KESRIRVTSKVVD 164
G + R+ ++G A+V+ A S + + I E+ ++ T ++
Sbjct: 61 HGDIRDAGLLARE-LRGVDAIVHFAA-------ESHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 165 LINESPEGVRPSVLVSATALGYYGTSETEVFDESSP-----------SGNDYLAEVCREW 213
++ GV V VS + YG+ ++ + ESSP +G+D +A
Sbjct: 113 CAVDA--GVGRVVHVSTDEV--YGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
Query: 214 EGTALKVNKDVRLALIRIGIVLGKDGGALAKMIPLFM--MFAGGPL---GSGQQWFSWIH 268
G +++ + G + K+IPLF+ + GG L G G W+H
Sbjct: 169 YGLDVRITR----CCNNYGPYQHPE-----KLIPLFVTNLLDGGTLPLYGDGANVREWVH 219
Query: 269 LDD 271
DD
Sbjct: 220 TDD 222
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 25/93 (26%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRF--- 109
V VTGA GF+ +V++L ++VR RS SK LA+ KR+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASK---------------LANLQKRWDAK 58
Query: 110 FPGVM-------IAEEPQWRDCIQGSTAVVNLA 135
+PG + ++ + + I+G+ V ++A
Sbjct: 59 YPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA 91
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKA-------ELIFPGKKENRV 99
V VTGA GF+ +V++L ++VR RS SK + +PG+ E V
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAV 67
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 55 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 86
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 186
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 55 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 86
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 105
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 254 GGPLGS--GQQWFSWI-----HLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMC 303
G LG G QW SW H+D I NL+ +NP R +I +A NP + EM
Sbjct: 183 NGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLI-VSAWNPALVDEMA 238
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 262 QWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEF 321
Q FS IH++DI ++ + + P V N PV ++ + + G P P +F
Sbjct: 178 QVFSRIHVEDIAQVLAASXARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLP-LPPAVDF 236
Query: 322 ALKAVLGEGAFVVLEGQRVVPARAK-ELGFPFKYRYVKDALKAIMS 366
+ E +RV R K ELG KY + L+A+ +
Sbjct: 237 DKADLTPXARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQA 282
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTR-SRSKAELIFPGKKENRVHRLASFNKRF 109
M + VTG GFIG LV +L ++V V+ S + E + P E V L ++
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNP-SAELHVRDLKDYS--- 56
Query: 110 FPGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLIN-- 167
W I+G V + A P E++ E + VV N
Sbjct: 57 -----------WGAGIKGDV-VFHFAANP-------EVRLSTTEPIVHFNENVVATFNVL 97
Query: 168 --ESPEGVRPSVLVSATALGYYGTSETEVFDESSP 200
GVR V S++ + YG ++ E P
Sbjct: 98 EWARQTGVRTVVFASSSTV--YGDADVIPTPEEEP 130
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKENRVHRLASFNKRF-F 110
T+ +TG GF+G L Q ++ + +V+ + ++ +F NR L F F
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSN---NRPSSLGHFKNLIGF 68
Query: 111 PGVMIAEE 118
G +IA +
Sbjct: 69 KGEVIAAD 76
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKEN 97
M V VTG GFIG +V+ L A +V VL + GK+EN
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDN-------LATGKREN 40
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 37 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 76
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|1XMA|A Chain A, Structure Of A Transcriptional Regulator From Clostridium
Thermocellum Cth-833
pdb|1XMA|B Chain B, Structure Of A Transcriptional Regulator From Clostridium
Thermocellum Cth-833
Length = 145
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 123 DCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLVSAT 182
D I+G + L+ G + EI K I RI+ V ++ + L SA
Sbjct: 36 DVIRGYVDTIILSLLIEGDSYGYEISKNI---RIKTDELYV---------IKETTLYSAF 83
Query: 183 AL--------GYYGTSETE----VFDESSPSGNDYLAEVCREWEGTALKVNKDVR 225
A YYG ET+ + +P G Y + C EWE T +NK V+
Sbjct: 84 ARLEKNGYIKSYYG-EETQGKRRTYYRITPEGIKYYKQKCEEWELTKKVINKFVK 137
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde
Dehydrogenase From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADN---HQVRVLTRSRSKA-ELIFPGKK 95
M V+V GATG +GR +++ L+A N ++R+ RS L F G++
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEE 49
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 52 TVSVTGATGFIGRRLV----QRLQADNHQVRVLTRSRSKAE 88
TV +TGATGF+GR LV +RL D + L R+ S +
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLI-CLVRAESDED 114
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V V RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKK 62
>pdb|3ANU|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney
pdb|3ANV|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (2,3-Dap Complex)
pdb|3AWN|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (Edta Treated)
pdb|3AWO|A Chain A, Crystal Structure Of D-Serine Dehydratase In Complex With
D-Serine From Chicken Kidney (Edta-Treated)
Length = 376
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 256 PLGSGQQWFSWIHLDDIVNLIYEALSNPS---YRGVINGTAPNPVRLAEMCDHLGNVLG 311
PLG G++W W+ LD ++P+ I AP V L + H GN G
Sbjct: 124 PLGHGKRWLVWLKLDCGNGRAGVRPTDPAALELAQAIANDAPEEVTLVGVYAHCGNTYG 182
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V + RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKK 62
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V + RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKK 62
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 41 TSDHTQKASQMTVSVTGATGFIGRRLVQRLQ------------ADNHQVR-VLTRSRSKA 87
+S H + S M + A F+G + LQ D+ R + T S A
Sbjct: 325 SSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLA 384
Query: 88 ELIFPGKKENRVHRLASFNKRFFPGVMIAEEPQWRDCIQGSTAVVNLAGTPIGTRWSSEI 147
L+FP K ++ + L N+R EP+W I + G IGT WS +I
Sbjct: 385 RLLFPPKDDHTLKFLYDDNQRV--------EPEWYIPIIPMVLINGAEG--IGTGWSCKI 434
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,954,436
Number of Sequences: 62578
Number of extensions: 461839
Number of successful extensions: 1258
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 43
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)