Query 017752
Match_columns 366
No_of_seqs 114 out of 143
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 5E-70 1.1E-74 494.6 14.6 166 151-316 1-179 (180)
2 COG4907 Predicted membrane pro 91.1 0.12 2.7E-06 54.4 2.1 10 28-37 551-560 (595)
3 PF02957 TT_ORF2: TT viral ORF 73.5 9.9 0.00022 32.6 5.9 12 92-103 107-118 (122)
4 PLN03138 Protein TOC75; Provis 60.8 19 0.00041 40.7 6.3 9 147-155 143-151 (796)
5 PF02979 NHase_alpha: Nitrile 59.7 5.8 0.00013 37.5 1.9 43 117-161 16-68 (188)
6 COG1512 Beta-propeller domains 56.3 9.8 0.00021 37.7 2.9 7 66-72 239-245 (271)
7 KOG3074 Transcriptional regula 55.2 7.3 0.00016 38.3 1.8 14 131-144 38-51 (263)
8 KOG3973 Uncharacterized conser 45.5 16 0.00034 38.1 2.5 21 66-86 360-383 (465)
9 PF07631 PSD4: Protein of unkn 42.9 49 0.0011 29.1 4.9 33 109-159 17-51 (128)
10 KOG4096 Uncharacterized conser 32.7 7.2 0.00016 32.0 -1.7 20 291-310 52-71 (75)
11 PF05918 API5: Apoptosis inhib 32.4 15 0.00032 39.9 0.0 12 59-70 517-528 (556)
12 PF08671 SinI: Anti-repressor 32.0 45 0.00099 22.9 2.3 21 114-135 9-29 (30)
13 PF07096 DUF1358: Protein of u 30.2 79 0.0017 28.3 4.1 55 247-304 28-91 (124)
14 KOG1456 Heterogeneous nuclear 29.5 46 0.001 35.1 2.9 21 189-209 165-185 (494)
15 PTZ00146 fibrillarin; Provisio 29.0 53 0.0011 32.9 3.2 9 246-254 226-234 (293)
16 TIGR02877 spore_yhbH sporulati 28.0 49 0.0011 34.4 2.8 10 93-102 116-125 (371)
17 TIGR01323 nitrile_alph nitrile 26.2 49 0.0011 31.4 2.2 42 117-160 10-61 (185)
18 PRK05325 hypothetical protein; 25.2 57 0.0012 34.2 2.7 11 185-195 201-211 (401)
19 KOG0921 Dosage compensation co 24.1 59 0.0013 37.9 2.7 26 66-91 1252-1278(1282)
20 KOG3915 Transcription regulato 23.9 65 0.0014 34.9 2.9 7 163-169 206-212 (641)
21 PHA02629 A-type inclusion body 22.3 46 0.00099 26.0 1.0 19 91-109 30-48 (61)
22 KOG0624 dsRNA-activated protei 21.9 61 0.0013 34.2 2.1 14 59-72 464-477 (504)
23 PF02084 Bindin: Bindin; Inte 20.5 60 0.0013 31.9 1.7 20 103-122 113-132 (238)
24 PF12095 DUF3571: Protein of u 20.4 96 0.0021 26.0 2.6 25 93-117 26-50 (83)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=5e-70 Score=494.58 Aligned_cols=166 Identities=54% Similarity=0.807 Sum_probs=162.1
Q ss_pred hhhccChhhHHHHHHHhhhhhhhhHHHHHhhcCcchHhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCcccccc-hHh
Q 017752 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTG-PIA 229 (366)
Q Consensus 151 ~RlLADP~FlfKl~~E~~i~v~~~~~aE~~~Rge~F~~ElDfv~sd~v~g~i~nf~LV~LlAPt~s~~~~~~~~ag-~l~ 229 (366)
|||||||+|||||++||+||++|+++|||++|||+||+|||||+||+++++|+||+||||||||++++++.+...+ .++
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~~~~~ 80 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPGGGLQ 80 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998775544 899
Q ss_pred hhhhhCChhHH------------hhHHHHHhcchhhhhhhhHhhhhHHHHHHHHHHHHHhcCcCCCCCCCCCcchhhhhh
Q 017752 230 KFFFNCPDNAF------------QRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVA 297 (366)
Q Consensus 230 k~~~~lP~n~F------------qR~ga~~~KG~~l~~VG~~aglvG~glsN~L~~~Rk~~d~~~~~~~~~pP~l~tal~ 297 (366)
|+|++||+|+| ||++||+|||++|++|||+||++|+++||+|+++||++||+||+++++||+++||++
T Consensus 81 ~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~~ 160 (180)
T PF11891_consen 81 KFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTALG 160 (180)
T ss_pred HHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHH
Confidence 99999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhccchhhHHHHHHH
Q 017752 298 YGVYMAVSSNLRYQVLAGV 316 (366)
Q Consensus 298 wg~fMGvSSNlRYQil~Gl 316 (366)
||+|||+|||+|||+|||+
T Consensus 161 ~g~fmGvSsNlRYQil~Gi 179 (180)
T PF11891_consen 161 WGAFMGVSSNLRYQILNGI 179 (180)
T ss_pred HHHHHhhhHhHHHHHHcCC
Confidence 9999999999999999998
No 2
>COG4907 Predicted membrane protein [Function unknown]
Probab=91.13 E-value=0.12 Score=54.41 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.4
Q ss_pred eccccCCCCC
Q 017752 28 KNITRQIPNP 37 (366)
Q Consensus 28 ~~~~~~~~~~ 37 (366)
||-+|--.++
T Consensus 551 ~nysr~~~~~ 560 (595)
T COG4907 551 NNYSRSFNNL 560 (595)
T ss_pred cchhhhhccc
Confidence 4445444433
No 3
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=73.52 E-value=9.9 Score=32.55 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHh
Q 017752 92 NCTEAIFALAKA 103 (366)
Q Consensus 92 ~r~e~~~Vl~e~ 103 (366)
.-+++++++++.
T Consensus 107 ~~~dld~L~aa~ 118 (122)
T PF02957_consen 107 DEEDLDELFAAA 118 (122)
T ss_pred ChHHHHHHhhhh
Confidence 444555555543
No 4
>PLN03138 Protein TOC75; Provisional
Probab=60.84 E-value=19 Score=40.71 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.3
Q ss_pred ccchhhhcc
Q 017752 147 GGFRERLLA 155 (366)
Q Consensus 147 ~g~r~RlLA 155 (366)
.|+++=...
T Consensus 143 ~~~~~~~vs 151 (796)
T PLN03138 143 SGFKRYKVS 151 (796)
T ss_pred CCcceEEEE
Confidence 333333333
No 5
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=59.70 E-value=5.8 Score=37.54 Aligned_cols=43 Identities=37% Similarity=0.464 Sum_probs=30.9
Q ss_pred HHHcCCCCHHHHHHHHhhccC---hhh-------HHhhhcccchhhhccChhhHH
Q 017752 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFLA 161 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~r~RlLADP~Flf 161 (366)
-+|.|.|+++.+.++.+...+ |.. .|. -++||+|||+||.=..
T Consensus 16 l~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~--Dp~FK~rLLaD~~aA~ 68 (188)
T PF02979_consen 16 LIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWT--DPAFKARLLADPTAAI 68 (188)
T ss_dssp HHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH---HHHHHHHHHSHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhC--CHHHHHHHHHCHHHHH
Confidence 368899999999998887654 421 144 4999999999997443
No 6
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=56.27 E-value=9.8 Score=37.65 Aligned_cols=7 Identities=57% Similarity=1.242 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 017752 66 GGGKGGG 72 (366)
Q Consensus 66 ~~ggggg 72 (366)
|+|++|+
T Consensus 239 g~g~~g~ 245 (271)
T COG1512 239 GSGGSGG 245 (271)
T ss_pred CCCCCCC
Confidence 3344433
No 7
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=55.23 E-value=7.3 Score=38.29 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=8.5
Q ss_pred HHhhccChhhHHhh
Q 017752 131 YLELEKSPVFRWLL 144 (366)
Q Consensus 131 fl~l~~~p~~~~l~ 144 (366)
|||+...|-.|+|.
T Consensus 38 YlDvkqN~rGRflK 51 (263)
T KOG3074|consen 38 YLDVKQNPRGRFLK 51 (263)
T ss_pred EEEeccCCCcceEE
Confidence 67777776555443
No 8
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=45.53 E-value=16 Score=38.09 Aligned_cols=21 Identities=57% Similarity=1.166 Sum_probs=0.0
Q ss_pred cCCCC--CC-CCCCCCCCCCCCCC
Q 017752 66 GGGKG--GG-GSWGSGGGGGGGDD 86 (366)
Q Consensus 66 ~~ggg--gg-~gg~~gg~g~g~~~ 86 (366)
|++|+ +| |||-||||+|||++
T Consensus 360 gg~Gg~~gGrGgGRGggG~GGGgg 383 (465)
T KOG3973|consen 360 GGSGGNWGGRGGGRGGGGRGGGGG 383 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
No 9
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=42.94 E-value=49 Score=29.05 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=24.1
Q ss_pred Cch-HHHHHHHHcCCC-CHHHHHHHHhhccChhhHHhhhcccchhhhccChhh
Q 017752 109 DLP-KDLAGAIEAGRV-PAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLF 159 (366)
Q Consensus 109 ~LP-~dl~~A~e~G~v-s~~~L~rfl~l~~~p~~~~l~~~~g~r~RlLADP~F 159 (366)
+.| +.|.+|++.|.+ +++++.+ -.+|||+||.+
T Consensus 17 s~PD~~L~~aA~~g~L~~~~~l~~------------------q~~RML~dpr~ 51 (128)
T PF07631_consen 17 SPPDAELLDAAAAGELRTPEQLRA------------------QAERMLADPRA 51 (128)
T ss_pred CCCCHHHHHHHHhCCCCCHHHHHH------------------HHHHHHcCccH
Confidence 456 678888898887 4555443 35799999987
No 10
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.72 E-value=7.2 Score=31.96 Aligned_cols=20 Identities=20% Similarity=0.698 Sum_probs=17.2
Q ss_pred chhhhhhhHhHhhccchhhH
Q 017752 291 IISTSVAYGVYMAVSSNLRY 310 (366)
Q Consensus 291 ~l~tal~wg~fMGvSSNlRY 310 (366)
+++++.++|+||++-+-+||
T Consensus 52 ~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 52 MLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred HHhccchhhhhhhhhhheec
Confidence 56777899999999988887
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=32.43 E-value=15 Score=39.87 Aligned_cols=12 Identities=25% Similarity=0.158 Sum_probs=0.0
Q ss_pred CceEEeccCCCC
Q 017752 59 PTVIFASGGGKG 70 (366)
Q Consensus 59 ~~~~~~~~~ggg 70 (366)
+|..-.++.||+
T Consensus 517 ~p~~k~ss~~~~ 528 (556)
T PF05918_consen 517 PPSGKYSSNGGN 528 (556)
T ss_dssp ------------
T ss_pred CCCCCCcCCCCC
Confidence 444433333333
No 12
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.96 E-value=45 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHcCCCCHHHHHHHHhhc
Q 017752 114 LAGAIEAGRVPAAIVKRYLELE 135 (366)
Q Consensus 114 l~~A~e~G~vs~~~L~rfl~l~ 135 (366)
|.+|.++ +++.++..+||+.+
T Consensus 9 i~eA~~~-Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKEAKES-GLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHhC
Confidence 5667664 58999999999865
No 13
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=30.21 E-value=79 Score=28.31 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=30.5
Q ss_pred HhcchhhhhhhhHhhhhHHHHHHHHHHHHHhcCcCCCCCC-CC------Ccc--hhhhhhhHhHhhc
Q 017752 247 VRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEA-ED------VPI--ISTSVAYGVYMAV 304 (366)
Q Consensus 247 ~~KG~~l~~VG~~aglvG~glsN~L~~~Rk~~d~~~~~~~-~~------pP~--l~tal~wg~fMGv 304 (366)
++.++.++.|+.++-++|- +..|..+||+ ||.+-... .. .+. -..|++||..+.+
T Consensus 28 ~~~~~FL~~Va~~s~~aGF--~~tl~~aKKk-~p~~F~kg~~~~~~l~esGasLAlRALgWGTlyA~ 91 (124)
T PF07096_consen 28 IKGGAFLGGVAGASALAGF--GTTLALAKKK-SPKWFSKGISQTKALHESGASLALRALGWGTLYAV 91 (124)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhc-CcHHHhccCcCcccCCcchHHHHHHHHhHHHHHHH
Confidence 3444556667766666655 4556666777 55442222 11 111 3457899977665
No 14
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=29.53 E-value=46 Score=35.10 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 017752 189 ELDFVFADVVMAIIADFMLVW 209 (366)
Q Consensus 189 ElDfv~sd~v~g~i~nf~LV~ 209 (366)
|+|=|-+-.-.=..+|-+=.|
T Consensus 165 EFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 165 EFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred eechhHHHHHHHhhccccccc
Confidence 566554444444444444444
No 15
>PTZ00146 fibrillarin; Provisional
Probab=28.97 E-value=53 Score=32.93 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.0
Q ss_pred HHhcchhhh
Q 017752 246 IVRNGAKLF 254 (366)
Q Consensus 246 ~~~KG~~l~ 254 (366)
++.+|..+.
T Consensus 226 ~LKpGG~~v 234 (293)
T PTZ00146 226 FLKNGGHFI 234 (293)
T ss_pred hccCCCEEE
Confidence 444444443
No 16
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=28.03 E-value=49 Score=34.36 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=5.3
Q ss_pred hHHHHHHHHH
Q 017752 93 CTEAIFALAK 102 (366)
Q Consensus 93 r~e~~~Vl~e 102 (366)
++|...+|=|
T Consensus 116 ~eE~~~~lfE 125 (371)
T TIGR02877 116 LEELFELLFE 125 (371)
T ss_pred HHHHHHHHHh
Confidence 4565555544
No 17
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=26.15 E-value=49 Score=31.40 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHcCCCCHHHHHHHHhhccC---hhh-------HHhhhcccchhhhccChhhH
Q 017752 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFL 160 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~r~RlLADP~Fl 160 (366)
-+|.|.|+++.+.+.++.... |.. .|. -|.||.|||+|..=.
T Consensus 10 l~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~--Dp~fk~~Ll~d~~aa 61 (185)
T TIGR01323 10 LKSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWV--DPEFRALLLKDATAA 61 (185)
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhc--CHHHHHHHHhChHHH
Confidence 368899999999888876544 431 143 489999999998643
No 18
>PRK05325 hypothetical protein; Provisional
Probab=25.24 E-value=57 Score=34.20 Aligned_cols=11 Identities=18% Similarity=0.470 Sum_probs=6.4
Q ss_pred chHhHHHHHHH
Q 017752 185 NFSKELDFVFA 195 (366)
Q Consensus 185 ~F~~ElDfv~s 195 (366)
.|.+++|+-+-
T Consensus 201 Pf~d~~DlRYr 211 (401)
T PRK05325 201 PFIDPFDLRYR 211 (401)
T ss_pred CCCCccccccc
Confidence 34677775543
No 19
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=24.10 E-value=59 Score=37.93 Aligned_cols=26 Identities=46% Similarity=0.804 Sum_probs=0.0
Q ss_pred cCCCCCC-CCCCCCCCCCCCCCCCCCC
Q 017752 66 GGGKGGG-GSWGSGGGGGGGDDDAGFH 91 (366)
Q Consensus 66 ~~ggggg-~gg~~gg~g~g~~~~~~~~ 91 (366)
|+||.++ +|++.|||||=|+++++..
T Consensus 1252 gsGGfgrgggrgagggGgfg~G~~Gg~ 1278 (1282)
T KOG0921|consen 1252 GSGGFGRGGGRGAGGGGGFGGGGRGGN 1278 (1282)
T ss_pred CCCCcCCCCCCCCCCCCCCCCCCcccc
No 20
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.87 E-value=65 Score=34.87 Aligned_cols=7 Identities=14% Similarity=0.059 Sum_probs=2.5
Q ss_pred HHHHhhh
Q 017752 163 VAMECGV 169 (366)
Q Consensus 163 l~~E~~i 169 (366)
|++--++
T Consensus 206 lFLKhlV 212 (641)
T KOG3915|consen 206 LFLKHLV 212 (641)
T ss_pred HHHHHHh
Confidence 3333333
No 21
>PHA02629 A-type inclusion body protein; Provisional
Probab=22.30 E-value=46 Score=25.96 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=9.0
Q ss_pred CChHHHHHHHHHhccccCC
Q 017752 91 HNCTEAIFALAKAGRTLGD 109 (366)
Q Consensus 91 ~~r~e~~~Vl~e~~rt~~~ 109 (366)
-.|+.|.-.-+|.-|.|+.
T Consensus 30 ferk~iavleaelr~~met 48 (61)
T PHA02629 30 FERKIIAVLEAELRKSMET 48 (61)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455444444455555544
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=21.91 E-value=61 Score=34.24 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=10.0
Q ss_pred CceEEeccCCCCCC
Q 017752 59 PTVIFASGGGKGGG 72 (366)
Q Consensus 59 ~~~~~~~~~ggggg 72 (366)
.|+....+-|||||
T Consensus 464 DPLD~Es~q~GGGg 477 (504)
T KOG0624|consen 464 DPLDPESQQGGGGG 477 (504)
T ss_pred CCCChhhccCCCCC
Confidence 67777777777666
No 23
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.54 E-value=60 Score=31.87 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.3
Q ss_pred hccccCCchHHHHHHHHcCC
Q 017752 103 AGRTLGDLPKDLAGAIEAGR 122 (366)
Q Consensus 103 ~~rt~~~LP~dl~~A~e~G~ 122 (366)
.+.|.-+||-||-+=++.|+
T Consensus 113 LgaTKiDLPVDINDPYDlGL 132 (238)
T PF02084_consen 113 LGATKIDLPVDINDPYDLGL 132 (238)
T ss_pred hcccccccccccCChhhHHH
Confidence 46788899999999999886
No 24
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=20.37 E-value=96 Score=26.00 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhccccCCchHHHHHH
Q 017752 93 CTEAIFALAKAGRTLGDLPKDLAGA 117 (366)
Q Consensus 93 r~e~~~Vl~e~~rt~~~LP~dl~~A 117 (366)
.+|..+-|++|-.+.++||.|++.-
T Consensus 26 ~~Ell~~Lk~~L~~~~~LP~dL~~~ 50 (83)
T PF12095_consen 26 PEELLEKLKEWLQNQDDLPPDLAKF 50 (83)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHH-
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 4789999999999999999999753
Done!