Query 017752
Match_columns 366
No_of_seqs 114 out of 143
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 93.6 0.0073 2.5E-07 58.9 -1.7 9 31-39 246-254 (358)
2 2l6f_A Focal adhesion kinase 1 69.6 1.2 4.2E-05 41.4 0.0 16 86-101 196-211 (215)
3 3u6r_H Antibody 1:7 (heavy cha 65.4 1.5 5E-05 37.2 0.3 9 61-69 125-133 (149)
4 1p4b_L Antibody variable light 55.6 2.8 9.5E-05 34.4 0.3 9 61-69 111-119 (135)
5 3hht_A NitrIle hydratase alpha 49.7 11 0.00038 35.1 3.4 45 117-161 36-88 (216)
6 3qyh_A CO-type nitrIle hydrata 45.8 8 0.00027 36.2 1.8 41 117-159 47-97 (226)
7 1ugp_A NitrIle hydratase alpha 33.5 17 0.00059 33.4 1.9 43 117-161 27-79 (203)
8 1ypw_A Transitional endoplasmi 30.6 11 0.00036 40.2 0.0 17 68-84 776-792 (806)
9 3a8g_A NitrIle hydratase subun 29.8 13 0.00043 34.5 0.4 43 117-161 30-82 (207)
10 1g3p_A G3P, minor coat protein 29.3 11 0.00038 34.3 -0.1 8 73-80 74-81 (217)
11 2zzd_C Thiocyanate hydrolase s 27.8 25 0.00084 33.2 1.9 41 117-159 38-87 (243)
12 3p8c_D Wiskott-aldrich syndrom 27.4 13 0.00044 35.7 0.0 14 29-42 126-139 (279)
13 3u6r_H Antibody 1:7 (heavy cha 27.3 13 0.00045 31.2 0.0 7 62-68 116-122 (149)
14 1lnz_A SPO0B-associated GTP-bi 26.8 43 0.0015 32.0 3.5 10 62-71 9-18 (342)
15 2da3_A Alpha-fetoprotein enhan 25.7 1.4E+02 0.0047 22.0 5.5 39 94-132 26-65 (80)
16 2i7u_A Four-alpha-helix bundle 22.9 26 0.0009 26.1 0.9 10 96-105 37-46 (62)
17 4fm4_A NitrIle hydratase alpha 22.2 25 0.00087 32.5 0.9 39 118-158 21-69 (209)
18 1wh7_A ZF-HD homeobox family p 21.6 2.7E+02 0.0092 21.1 8.0 17 116-132 53-69 (80)
19 1udx_A The GTP-binding protein 21.0 63 0.0022 31.8 3.5 20 260-279 305-324 (416)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=93.56 E-value=0.0073 Score=58.86 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.9
Q ss_pred ccCCCCCcc
Q 017752 31 TRQIPNPHL 39 (366)
Q Consensus 31 ~~~~~~~~~ 39 (366)
.+.+..++.
T Consensus 246 ~~~~~~L~~ 254 (358)
T 2pk2_A 246 EKTPNRLKR 254 (358)
T ss_dssp TTCTTHHHH
T ss_pred HhCcccccc
Confidence 344444443
No 2
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=69.63 E-value=1.2 Score=41.35 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=8.5
Q ss_pred CCCCCCChHHHHHHHH
Q 017752 86 DDAGFHNCTEAIFALA 101 (366)
Q Consensus 86 ~~~~~~~r~e~~~Vl~ 101 (366)
+.+++..-.|.++.|+
T Consensus 196 ~~~~~~~~~~~~~~~~ 211 (215)
T 2l6f_A 196 GSGGSSATRELDELMA 211 (215)
Confidence 3445555556666554
No 3
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=65.45 E-value=1.5 Score=37.16 Aligned_cols=9 Identities=44% Similarity=0.638 Sum_probs=1.8
Q ss_pred eEEeccCCC
Q 017752 61 VIFASGGGK 69 (366)
Q Consensus 61 ~~~~~~~gg 69 (366)
+.+.++.||
T Consensus 125 L~V~~~~~~ 133 (149)
T 3u6r_H 125 VTVSSGTGG 133 (149)
T ss_dssp EEEC-----
T ss_pred EEEEcCCCc
Confidence 444433333
No 4
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=55.62 E-value=2.8 Score=34.40 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=1.7
Q ss_pred eEEeccCCC
Q 017752 61 VIFASGGGK 69 (366)
Q Consensus 61 ~~~~~~~gg 69 (366)
+.+..++||
T Consensus 111 L~V~~~~~~ 119 (135)
T 1p4b_L 111 LTVLGGGGG 119 (135)
T ss_dssp EEEC-----
T ss_pred EEEEcCCCC
Confidence 444433333
No 5
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=49.74 E-value=11 Score=35.06 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=32.2
Q ss_pred HHHcCCCCHHHHHHHHhh-c--cChhhH--Hhh---hcccchhhhccChhhHH
Q 017752 117 AIEAGRVPAAIVKRYLEL-E--KSPVFR--WLL---NFGGFRERLLADDLFLA 161 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l-~--~~p~~~--~l~---~~~g~r~RlLADP~Flf 161 (366)
-+|.|.|+++.+.++.+. + ..|..+ -+- .-+.||.|||+||.=..
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi 88 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVL 88 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHH
Confidence 368899999999999986 2 246421 111 24999999999997443
No 6
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=45.76 E-value=8 Score=36.19 Aligned_cols=41 Identities=32% Similarity=0.475 Sum_probs=31.3
Q ss_pred HHHcCCCCHHHHHHHHh-hcc--Chhh-------HHhhhcccchhhhccChhh
Q 017752 117 AIEAGRVPAAIVKRYLE-LEK--SPVF-------RWLLNFGGFRERLLADDLF 159 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~-l~~--~p~~-------~~l~~~~g~r~RlLADP~F 159 (366)
-+|.|.|+++.+.++++ ++. .|.. +|. -+.||.|||+||.=
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~--Dp~FK~rLL~D~~a 97 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWV--DPAYKARLLADGTA 97 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhC--CHHHHHHHHHCHHH
Confidence 36889999999999998 433 4642 143 49999999999974
No 7
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=33.45 E-value=17 Score=33.44 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=32.0
Q ss_pred HHHcCCCCHHHHHHHHhhccC---hhh-------HHhhhcccchhhhccChhhHH
Q 017752 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFLA 161 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~r~RlLADP~Flf 161 (366)
-+|.|+|+++.+.++.+.-.. |.. +|. -+.||.|||+|+.=..
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~--Dp~fk~~Ll~d~~aA~ 79 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWT--DPEFKKRLLADGTEAC 79 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhC--CHHHHHHHHhChHHHH
Confidence 468899999999999886333 431 243 4999999999997543
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.60 E-value=11 Score=40.24 Aligned_cols=17 Identities=47% Similarity=0.949 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 017752 68 GKGGGGSWGSGGGGGGG 84 (366)
Q Consensus 68 ggggg~gg~~gg~g~g~ 84 (366)
++++|++.++|+||++|
T Consensus 776 ~~~~~~~~~~~~~~~~~ 792 (806)
T 1ypw_A 776 GNQGGAGPSQGSGGGTG 792 (806)
T ss_dssp -----------------
T ss_pred cccccCCCCCCCCCCCC
Confidence 33334444444444333
No 9
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=29.79 E-value=13 Score=34.49 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHcCCCCHHHHHHHHhhcc---Chhh-------HHhhhcccchhhhccChhhHH
Q 017752 117 AIEAGRVPAAIVKRYLELEK---SPVF-------RWLLNFGGFRERLLADDLFLA 161 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~---~p~~-------~~l~~~~g~r~RlLADP~Flf 161 (366)
-+|.|+|+++.+.++.+.-. .|.. +|. -+.||.|||+|+.=..
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~--DP~Fk~rLL~D~~aAi 82 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT--DPEFRQLLLTDGTAAV 82 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhC--CHHHHHHHHHCHHHHH
Confidence 46789999999999988633 3432 244 3899999999997443
No 10
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=29.32 E-value=11 Score=34.33 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 017752 73 GSWGSGGG 80 (366)
Q Consensus 73 ~gg~~gg~ 80 (366)
|++++|||
T Consensus 74 GdnSsGGg 81 (217)
T 1g3p_A 74 GGGSEGGG 81 (217)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 33333333
No 11
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=27.85 E-value=25 Score=33.23 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=30.3
Q ss_pred HHHcCCCCHHHHHHHHhh-cc-Chhh-------HHhhhcccchhhhccChhh
Q 017752 117 AIEAGRVPAAIVKRYLEL-EK-SPVF-------RWLLNFGGFRERLLADDLF 159 (366)
Q Consensus 117 A~e~G~vs~~~L~rfl~l-~~-~p~~-------~~l~~~~g~r~RlLADP~F 159 (366)
.+|.|+|+++.+.++.+. +. .|.. +|+ -+.||+|||+|+.=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~--DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWL--DPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHH--CHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecC--CHHHHHHHHHChHH
Confidence 468999999999999885 22 3531 144 38899999999863
No 12
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.41 E-value=13 Score=35.69 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.2
Q ss_pred ccccCCCCCcccce
Q 017752 29 NITRQIPNPHLINF 42 (366)
Q Consensus 29 ~~~~~~~~~~~~~~ 42 (366)
...|.|+.++.+..
T Consensus 126 ~~C~~PP~L~lLd~ 139 (279)
T 3p8c_D 126 DVCEQPPPLNILTP 139 (279)
T ss_dssp HHSBCCCCGGGGGG
T ss_pred HhcCCCCCCccccc
Confidence 34555555555543
No 13
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=27.34 E-value=13 Score=31.22 Aligned_cols=7 Identities=29% Similarity=0.154 Sum_probs=3.5
Q ss_pred EEeccCC
Q 017752 62 IFASGGG 68 (366)
Q Consensus 62 ~~~~~~g 68 (366)
...+|.|
T Consensus 116 ~~~fG~G 122 (149)
T 3u6r_H 116 FDYWGQG 122 (149)
T ss_dssp EEEECCC
T ss_pred eeEECCC
Confidence 3445555
No 14
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=26.81 E-value=43 Score=31.96 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=4.5
Q ss_pred EEeccCCCCC
Q 017752 62 IFASGGGKGG 71 (366)
Q Consensus 62 ~~~~~~gggg 71 (366)
.+-.|.||+|
T Consensus 9 ~~~~g~gg~g 18 (342)
T 1lnz_A 9 YVKGGDGGNG 18 (342)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCc
Confidence 3444445444
No 15
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.74 E-value=1.4e+02 Score=22.01 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=22.1
Q ss_pred HHHHHHHHHhccccCCchHH-HHHHHHcCCCCHHHHHHHH
Q 017752 94 TEAIFALAKAGRTLGDLPKD-LAGAIEAGRVPAAIVKRYL 132 (366)
Q Consensus 94 ~e~~~Vl~e~~rt~~~LP~d-l~~A~e~G~vs~~~L~rfl 132 (366)
.+-..+|.+++..---.... ..+-++.=.++..++..||
T Consensus 26 ~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WF 65 (80)
T 2da3_A 26 PEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWF 65 (80)
T ss_dssp TTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHh
Confidence 34556777777654443333 3333344457777777766
No 16
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=22.93 E-value=26 Score=26.07 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=4.0
Q ss_pred HHHHHHHhcc
Q 017752 96 AIFALAKAGR 105 (366)
Q Consensus 96 ~~~Vl~e~~r 105 (366)
.+..-.|+.+
T Consensus 37 lmklceeaak 46 (62)
T 2i7u_A 37 LMKLCEEAAK 46 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 17
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=22.17 E-value=25 Score=32.51 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=29.2
Q ss_pred HHcCCCCHHHHHHHHhh-cc--Chh------h-HHhhhcccchhhhccChh
Q 017752 118 IEAGRVPAAIVKRYLEL-EK--SPV------F-RWLLNFGGFRERLLADDL 158 (366)
Q Consensus 118 ~e~G~vs~~~L~rfl~l-~~--~p~------~-~~l~~~~g~r~RlLADP~ 158 (366)
+|.|+|.++.+..|.+. +. .|. . +|. -+.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~--Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWT--DPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhC--CHHHHHHHHHHHH
Confidence 47899999999999983 32 253 1 254 3899999999995
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.58 E-value=2.7e+02 Score=21.15 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=10.9
Q ss_pred HHHHcCCCCHHHHHHHH
Q 017752 116 GAIEAGRVPAAIVKRYL 132 (366)
Q Consensus 116 ~A~e~G~vs~~~L~rfl 132 (366)
+-++.=.+++.+++=+|
T Consensus 53 ~La~~lgL~e~qVkvWF 69 (80)
T 1wh7_A 53 QFCAETGVRRQVLKIWM 69 (80)
T ss_dssp HHHHHSCCCHHHHHHHH
T ss_pred HHHHHhCcCcCcccccc
Confidence 33444568888877766
No 19
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=21.01 E-value=63 Score=31.84 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHhcC
Q 017752 260 ASLVGVGITNALINARKALD 279 (366)
Q Consensus 260 aglvG~glsN~L~~~Rk~~d 279 (366)
+..-+.++...+-.+.+.+.
T Consensus 305 SA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 305 SALTGAGLPALKEALHALVR 324 (416)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHHHH
Confidence 44445566666555555443
Done!