Query 017754
Match_columns 366
No_of_seqs 343 out of 2157
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 4.8E-15 1.6E-19 144.6 21.5 184 129-351 245-438 (451)
2 4aps_A DI-OR tripeptide H+ sym 99.6 2.6E-14 9E-19 141.5 20.5 171 137-346 14-196 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.6 1.4E-14 4.9E-19 141.2 13.9 176 135-349 27-209 (451)
4 3o7q_A L-fucose-proton symport 99.6 1E-13 3.4E-18 134.8 19.1 144 138-288 28-177 (438)
5 2gfp_A EMRD, multidrug resista 99.6 2.8E-14 9.6E-19 136.3 14.8 170 140-348 4-176 (375)
6 3o7q_A L-fucose-proton symport 99.5 2.3E-13 7.8E-18 132.3 20.0 155 129-292 251-409 (438)
7 2xut_A Proton/peptide symporte 99.5 3E-13 1E-17 135.1 15.4 170 136-344 12-196 (524)
8 2cfq_A Lactose permease; trans 99.5 7.3E-13 2.5E-17 129.2 15.5 181 129-348 213-401 (417)
9 4gc0_A D-xylose-proton symport 99.3 2.1E-11 7.3E-16 120.3 16.1 173 149-354 290-470 (491)
10 4gc0_A D-xylose-proton symport 99.3 8.4E-11 2.9E-15 116.1 16.6 129 155-290 31-188 (491)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1.8E-10 6.2E-15 113.8 15.6 180 138-352 285-477 (491)
12 2gfp_A EMRD, multidrug resista 99.2 2.3E-11 7.9E-16 116.0 6.6 156 127-292 190-354 (375)
13 2cfq_A Lactose permease; trans 99.1 3.5E-11 1.2E-15 117.2 2.1 149 132-289 3-163 (417)
14 2xut_A Proton/peptide symporte 98.6 1.2E-07 3.9E-12 94.4 9.4 84 207-291 375-468 (524)
15 2knc_B Integrin beta-3; transm 33.9 44 0.0015 23.9 3.8 27 319-345 4-31 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=4.8e-15 Score=144.62 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=146.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhh--hhhccCc
Q 017754 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP 203 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~--grr~~~~ 203 (366)
.++.++++.+|.+.+..++.......+..++|.+.++ +|++.... ..++..++..+++++.|+++||+ +||+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~- 323 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT- 323 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence 4567788999998888888777777788899999887 79987655 78888899999999999999999 775433
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhh---hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhh-hHHh
Q 017754 204 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI 278 (366)
Q Consensus 204 R~~~~~~~~~~~~-~~~~l~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~-G~~i 278 (366)
..+.++.. ++++++... +...+.+..++.|++.+..++....++.|.+|++++|+++|+.+....+ |..+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 33333333 555554432 3445666777888888888888889999999999999999999999999 9996
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhch
Q 017754 279 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 351 (366)
Q Consensus 279 ~gp~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r 351 (366)
+|.+.|+++|..+ |+..|++.+++++++.++.+++.++.+
T Consensus 399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 1pw4_A 399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEK 438 (451)
T ss_dssp -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999876 999999999888888777666544433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.61 E-value=2.6e-14 Score=141.48 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHhcHHHHHHH------hCCChhHH--HHHHHHHHHhhhhhhhhhhhhh-hhhhccCchhHH
Q 017754 137 DFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPVA 207 (366)
Q Consensus 137 ~~~ll~~~~~~~~~~~~~~~~~l~~i~~~------~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~-~grr~~~~R~~~ 207 (366)
.+|.+++..++.....+.+..+++.+.++ +|++..+. ..+...++..++.+++|+++|| +|||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~----- 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV----- 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence 46777767666666666666677776654 78887765 8889999999999999999999 8998765
Q ss_pred HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCc--hhhHHHHHHhhhhhhHHhhhhHHH
Q 017754 208 MAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 208 ~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~--~g~~~g~~~~~~~~G~~i~gp~l~ 284 (366)
..+.++.+++.++++. .+...+++++++.|++.|...+...++++|.++.++ ++.++++.+....+|..+ +|.++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 6777777777777664 456678889999999999999999999999999988 888899999999999996 99999
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 017754 285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIV 346 (366)
Q Consensus 285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~ 346 (366)
|++.+..+ |++.|++.++.++++.++.++.
T Consensus 167 ~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 167 GAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99998776 9999999887777766665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=1.4e-14 Score=141.22 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=140.9
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHH
Q 017754 135 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 212 (366)
Q Consensus 135 ~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~ 212 (366)
.+.++.+++..++.......+...+|.+.+++ .+..+. ..++..++..++.+++|+++||+|||+.+ .++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHH
Confidence 34455556666665555555667788888888 776655 88899999999999999999999998755 6777
Q ss_pred HHHHHHHHHHHh----h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHH
Q 017754 213 VVMAFALLYYAI----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 287 (366)
Q Consensus 213 ~~~~~~~~l~~~----~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l 287 (366)
++.+++.++++. . +...+++++++.|++.+..++...++++|+++.++|+.+.++.+....+|..+ +|.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777777766654 3 44578888999999999999999999999999999999999999999999996 99999998
Q ss_pred HhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 017754 288 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHR 349 (366)
Q Consensus 288 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 349 (366)
.+..+ +|++.|++.++++++..++.+++.++
T Consensus 179 ~~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 86653 29999999988887776666555443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57 E-value=1e-13 Score=134.83 Aligned_cols=144 Identities=15% Similarity=0.049 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 017754 138 FLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVM 215 (366)
Q Consensus 138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~ 215 (366)
++.+.+.+++...........+|.+.+++|.+..+. ..+...++..++.+.+|+++||+|||+.+ ..+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence 344444444444444556667888999999988776 88899999999999999999999998765 6777777
Q ss_pred HHHHHHH---H-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHH
Q 017754 216 AFALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 288 (366)
Q Consensus 216 ~~~~~l~---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~ 288 (366)
+++.++. . ..+...+++++++.|++.|...+...++++|.++.++|+.+.++.+....+|..+ +|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7777665 4 3456678889999999999999999999999999999999999999999999996 999999988
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.57 E-value=2.8e-14 Score=136.34 Aligned_cols=170 Identities=10% Similarity=0.128 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHH
Q 017754 140 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF 217 (366)
Q Consensus 140 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~ 217 (366)
++++..++.......+...+|.+.+++|.+..+. ..+...++..++.+.+|+++||+|||+.. ..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444555555555566677888899999988765 78899999999999999999999999888 677777777
Q ss_pred HHHHHH-hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhh
Q 017754 218 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA 296 (366)
Q Consensus 218 ~~~l~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~ 296 (366)
+.++.. ..+...+++.+++.|++.+...+...++++|.+++++|+...++.+....+|..+ +|.+++++.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence 766655 3455677888999999999999999999999999999999999999999999996 9999999998776
Q ss_pred hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754 297 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 348 (366)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~ 348 (366)
|++.|++.++.+++..+......+
T Consensus 153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 153 ----------------------------WRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999888777666554433333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.55 E-value=2.3e-13 Score=132.28 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=121.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHH-HHHh-CCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCch
Q 017754 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR 204 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R 204 (366)
+++.++++.+|...+..++.......+..++|.+ .++. |++.... ..++..++..+++++.|+++||++||+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-- 328 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-- 328 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 4566778889988888888777777888899998 7775 9887665 77788899999999999999999987644
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754 205 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~ 284 (366)
..+.++.+++.+++.........+..++.|++.+..++...++..|.++++ ++.+.++.. ...+|+.+ +|.+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~ 401 (438)
T 3o7q_A 329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM 401 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence 555566666665555433334455567888999988999999989999866 788888776 55688886 99999
Q ss_pred HHHHhhhh
Q 017754 285 SGIYDYYA 292 (366)
Q Consensus 285 G~l~d~~~ 292 (366)
|++.|..+
T Consensus 402 g~l~~~~g 409 (438)
T 3o7q_A 402 GFVSDAAG 409 (438)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999886
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.49 E-value=3e-13 Score=135.11 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhcHHHHH-HHhC------CChhHH--HHHHHHHHHhhhhhhhhhhhhhh-hhhccCchh
Q 017754 136 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP 205 (366)
Q Consensus 136 ~~~~ll~~~~~~~~~~~~~~~~~l~~i~-~~~g------~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~-grr~~~~R~ 205 (366)
+.+|.+++..++.....+....+++.+. +++| ++.... ..+.+.++..++.+++|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 3466666666666666666667777665 4578 877655 78889999999999999999999 987755
Q ss_pred HHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHH---HHhhhhhhHHhhh
Q 017754 206 VAMAVAQVVMAFALLYYAI-G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS 280 (366)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~---~~~~~~~G~~i~g 280 (366)
.++.++.+++.+++.. . +...+++++++.|++.+...+...++++|.++.++++...+. .+....+|..+ +
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 6666777777666653 4 566788889999999999999999999999999998765544 88899999996 9
Q ss_pred hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017754 281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSL 344 (366)
Q Consensus 281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~ 344 (366)
|.++|++.+..+ |++.|++.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999988765 99999988877766655543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.46 E-value=7.3e-13 Score=129.17 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=127.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHHh-CCC---hhH--HHHHHHHHHHhhhhhhhhhhhhhhhhhccC
Q 017754 129 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQSL-GYA---DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 202 (366)
Q Consensus 129 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~~-g~s---~~~--~~vsl~~i~~~~g~~~~G~lsD~~grr~~~ 202 (366)
+++.++++++|.+.+..++.......+..++|.+..+. +.. ... ...++..++..++.++.|+++||++||+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 35677888888766554444333334445677776553 321 111 145566678888999999999999987644
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHH-HhhhhhhHHhhh
Q 017754 203 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS 280 (366)
Q Consensus 203 ~R~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~-~~~~~~G~~i~g 280 (366)
..+.++++++.+++.. .+...+++..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus 293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g 365 (417)
T 2cfq_A 293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M 365 (417)
T ss_dssp ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence 4555566665555543 33444555556667776666666778999999999999999994 8888899996 9
Q ss_pred hHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 017754 281 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 348 (366)
Q Consensus 281 p~l~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~ 348 (366)
|.++|+++|..+ |...|.+.+++++++.++.+.+.+
T Consensus 366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999776 888999888888887766554443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.32 E-value=2.1e-11 Score=120.32 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=116.7
Q ss_pred hhhHHHHHhcHHHHHHHhCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH---
Q 017754 149 SGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA--- 223 (366)
Q Consensus 149 ~~~~~~~~~~l~~i~~~~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~--- 223 (366)
......+..+.+++.+..+.+.... ...+.++...++.++.+++.||+|||+.. ..+...++++.+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence 3334455667778888888776554 55667788889999999999999998655 344444444433332
Q ss_pred -hhhh-HHHHHHHHHHHHHHh-hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHHHHHhhhhhhhhhhhh
Q 017754 224 -IGWP-GEIYVTTVLVGLSYG-AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLW 300 (366)
Q Consensus 224 -~~~~-~~l~~~~~l~G~~~g-~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G~l~d~~~~~~~~~~~ 300 (366)
...+ ....+..+++..+++ +..++.+.+.+|+||++.|+++.|+.+..+.+|+.+ ++.+...+.+.......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~---- 438 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH---- 438 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH----
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh----
Confidence 1112 222222333322322 234567789999999999999999999999999996 78888777654321100
Q ss_pred hccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 017754 301 KYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSVY 354 (366)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~~~ 354 (366)
..+...|++.+++++++++..+++.++||.+.
T Consensus 439 ----------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 439 ----------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred ----------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 01556788999999999988888888887654
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.27 E-value=8.4e-11 Score=116.06 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=101.4
Q ss_pred HHhcHHHHHHHhCCC----hh--H----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHHH-
Q 017754 155 VIDNLGQICQSLGYA----DT--S----IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA- 223 (366)
Q Consensus 155 ~~~~l~~i~~~~g~s----~~--~----~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~~~~~~~l~~- 223 (366)
+...+|.+.++++.+ .. + ..++.+.++..+|.+++|+++||+|||+.+ .++.+++.++.++.+
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~ 104 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAW 104 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHH
Confidence 334577777666432 11 1 167778899999999999999999998876 677777777766654
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHHH
Q 017754 224 ------------------IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIAS 285 (366)
Q Consensus 224 ------------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~G 285 (366)
..+...+++++++.|++.|+..+..+.+++|..|+++|+...++...+..+|..+ ++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~ 183 (491)
T 4gc0_A 105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNY 183 (491)
T ss_dssp TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcch
Confidence 2355678999999999999999999999999999999999999999999999885 666655
Q ss_pred HHHhh
Q 017754 286 GIYDY 290 (366)
Q Consensus 286 ~l~d~ 290 (366)
.+.+.
T Consensus 184 ~~~~~ 188 (491)
T 4gc0_A 184 FIARS 188 (491)
T ss_dssp HHHTT
T ss_pred hhccc
Confidence 55443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=1.8e-10 Score=113.75 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCCh--hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHHHHHHHH
Q 017754 138 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV 214 (366)
Q Consensus 138 ~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~--~~~~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~~~~~~~ 214 (366)
++.+++..++..........+++.+.++ .+.+. .....++..++..++.++.|+++||++||+.. +...+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 3444434344334444455667777765 45542 22366777788888999999999999998654 33344456666
Q ss_pred HHHHHHHHHhh----------hhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhhhhHHH
Q 017754 215 MAFALLYYAIG----------WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 284 (366)
Q Consensus 215 ~~~~~~l~~~~----------~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~gp~l~ 284 (366)
++++++++... +...+.+..++.|++.+...+...+++.|.+|.+.+|++.|+.++...+|..+ +|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 66665554321 33456667778899888888888999999999999999999999999999996 89988
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 017754 285 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 352 (366)
Q Consensus 285 G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~r~ 352 (366)
|++.|. + +...|++.+++++++.++.+++.++.++
T Consensus 443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887653 2 6667888888887777766665555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.17 E-value=2.3e-11 Score=115.97 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=116.9
Q ss_pred CCHHHHhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCc
Q 017754 127 FTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYP 203 (366)
Q Consensus 127 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~ 203 (366)
.++++.++++.+|.+.+..++.......+..++|.+.++ +|++.... ..+...++..+++++.|+++||++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--- 266 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--- 266 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 356788899999988888777777666777777877766 78776554 677788888999999999999987621
Q ss_pred hhHHHHHHHHH-HHHHHH--HHHh---hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHH
Q 017754 204 RPVAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 277 (366)
Q Consensus 204 R~~~~~~~~~~-~~~~~~--l~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~ 277 (366)
..+..+ ...+.. .+.. .+...+++..++.|++.+..++...+.+.|.+| +++|++.|+.+....+|..
T Consensus 267 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 267 -----WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp -----HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 111111 122211 1111 233445567778899999888999999999998 8999999999999999999
Q ss_pred hhhhHHHHHHHhhhh
Q 017754 278 IFSGVIASGIYDYYA 292 (366)
Q Consensus 278 i~gp~l~G~l~d~~~ 292 (366)
+ +|.+.|.+.+..+
T Consensus 341 ~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 341 V-LASLSAMLPQTGQ 354 (375)
T ss_dssp C-CSTTCTHHHHHHH
T ss_pred H-HHHHHHHHhcCCc
Confidence 6 9999999988665
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.05 E-value=3.5e-11 Score=117.21 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=94.0
Q ss_pred HhhhhhHHHHHHHHHHhhhhHHHHHhcHHHHHHH-hCCChhHH--HHHHHHHHHhhhhhhhhhhhhhhhhhccCchhHHH
Q 017754 132 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 208 (366)
Q Consensus 132 ~l~~~~~~ll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~vsl~~i~~~~g~~~~G~lsD~~grr~~~~R~~~~ 208 (366)
.++++.+|.+....++.......+...+|.+.++ +|++..+. ..+...++..++++++|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 4688899988777666655555666778887765 79887654 88888999999999999999999998765
Q ss_pred HHHHHHHHH---HHHHHHhhhh--HHHHHHHHHHHHHHh----hhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhHHhh
Q 017754 209 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYG----AHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 279 (366)
Q Consensus 209 ~~~~~~~~~---~~~l~~~~~~--~~l~~~~~l~G~~~g----~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~~i~ 279 (366)
..+..+.++ ..+....... ...+...++.+++.| ...+....+..+. .++++..+|.......+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 333332222 1111111100 011122222222222 2223333333332 245677888888888999986
Q ss_pred hhHHHHHHHh
Q 017754 280 SGVIASGIYD 289 (366)
Q Consensus 280 gp~l~G~l~d 289 (366)
+|.++|++.+
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.58 E-value=1.2e-07 Score=94.39 Aligned_cols=84 Identities=12% Similarity=-0.045 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhCCCchhhHHHHHHhhhhhhH
Q 017754 207 AMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGS 276 (366)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~se~f~~~~~g~~~g~~~~~~~~G~ 276 (366)
.+.++.++++++++++.. .+...+.+..++.|++.+...+...+++.|.+|++.+|+++|+.++...+|+
T Consensus 375 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 454 (524)
T 2xut_A 375 KMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN 454 (524)
T ss_dssp HHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH
Confidence 345566666666665543 1234566677888999888888888899999999999999999999999999
Q ss_pred HhhhhHHHHHHHhhh
Q 017754 277 LIFSGVIASGIYDYY 291 (366)
Q Consensus 277 ~i~gp~l~G~l~d~~ 291 (366)
.+ ||.+.|.+.|..
T Consensus 455 ~~-g~~~~g~~~~~~ 468 (524)
T 2xut_A 455 LW-VLLANVSVKSPT 468 (524)
T ss_dssp HH-HHHHHHHTTSCH
T ss_pred HH-HHHHHHHhcccc
Confidence 96 999999998754
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.89 E-value=44 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=14.8
Q ss_pred c-cCCcchHHHHHHHHHHHHHHHHHHHH
Q 017754 319 C-LGSICYSITCGIMAGLCIIAMVMSLI 345 (366)
Q Consensus 319 c-~g~~~~~~~f~i~~~~~~~~~~~~~~ 345 (366)
| ..++-+..+..+.+++.++++++.++
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 5 33444555556666666666554443
Done!