BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017755
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
           Trna(Leu) And Leucyl-Adenylate Analogue In The
           Aminoacylation Conformation
 pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
           Trna(Leu) And Leucyl-Adenylate Analogue In The
           Aminoacylation Conformation
 pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
           Trna(Leu) And Leucine In The Editing Conformation
 pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
           Trna(Leu) And The Benzoxaborole An2679 In The Editing
           Conformation
 pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
           Trna(Leu) And The Benzoxaborole An2679 In The Editing
           Conformation
 pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
           Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
           Aminoacylation- Like Conformation
 pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
           Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
           Aminoacylation- Like Conformation
          Length = 880

 Score = 31.6 bits (70), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 82  IEYPFKKYNRGHTS--VIGCCHGLLAMFNRRLGMSVFNP------------TTKKFKLFP 127
           + YP  + + GH     IG    ++A + R LG +V  P               K    P
Sbjct: 61  LPYPSGRLHMGHVRNYTIG---DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAP 117

Query: 128 QFWSDCYTDYMTNNFHFDGFGYDASTD 154
             W+     YM N     GFGYD S +
Sbjct: 118 APWTYDNIAYMKNQLKMLGFGYDWSRE 144


>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
           From Saccharomyces Cerevisiae
 pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
           From Saccharomyces Cerevisiae
          Length = 240

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 124 KLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDY-LEVIIYSLKADTW 182
           K F Q   D +   +T+  HF G GY    D+  L+++I+++   Y  + + Y LK   W
Sbjct: 171 KAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDE--LLKVIETFYPQYHPKNMQYKLK--DW 226

Query: 183 RRTREFPYYILDDRCN 198
           R        +LDD  N
Sbjct: 227 RD-------VLDDGSN 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,197,687
Number of Sequences: 62578
Number of extensions: 475722
Number of successful extensions: 1118
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 3
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)