Query 017755
Match_columns 366
No_of_seqs 132 out of 1544
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.1E-35 2.4E-40 257.7 26.8 223 97-328 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.8 1.2E-16 2.6E-21 130.5 18.8 150 199-351 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.2E-15 2.7E-20 119.5 14.7 112 199-313 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 3.7E-12 8E-17 114.7 21.9 323 2-353 5-373 (373)
5 PHA02713 hypothetical protein; 99.3 1.9E-10 4.2E-15 111.9 19.4 201 111-336 320-543 (557)
6 KOG4441 Proteins containing BT 99.2 4.1E-10 8.8E-15 109.4 18.2 196 111-333 349-553 (571)
7 PHA02713 hypothetical protein; 99.2 1.6E-09 3.4E-14 105.6 19.9 195 112-334 273-497 (557)
8 PHA03098 kelch-like protein; P 99.2 2.3E-09 5E-14 104.7 20.8 197 112-334 312-519 (534)
9 KOG4441 Proteins containing BT 99.2 1.9E-09 4.2E-14 104.7 19.9 197 111-334 301-507 (571)
10 PHA02790 Kelch-like protein; P 99.1 1.6E-08 3.5E-13 97.0 20.1 184 111-333 287-477 (480)
11 TIGR03548 mutarot_permut cycli 99.1 6.1E-08 1.3E-12 88.5 22.9 231 112-363 40-317 (323)
12 PLN02153 epithiospecifier prot 99.1 2.3E-08 5E-13 92.0 20.2 208 111-335 50-293 (341)
13 PLN02193 nitrile-specifier pro 99.0 7.8E-08 1.7E-12 92.1 20.8 206 112-335 194-419 (470)
14 TIGR03547 muta_rot_YjhT mutatr 99.0 2.4E-07 5.2E-12 85.4 22.0 208 111-334 29-306 (346)
15 PF12937 F-box-like: F-box-lik 98.9 2.9E-10 6.2E-15 71.9 -0.2 42 1-42 1-42 (47)
16 PHA03098 kelch-like protein; P 98.8 1.6E-07 3.6E-12 91.7 17.2 194 112-334 265-472 (534)
17 PRK14131 N-acetylneuraminic ac 98.8 9.2E-07 2E-11 82.4 21.2 244 98-357 35-351 (376)
18 PHA02790 Kelch-like protein; P 98.7 6.9E-07 1.5E-11 85.8 17.5 166 169-357 286-454 (480)
19 PF00646 F-box: F-box domain; 98.7 1.5E-09 3.2E-14 69.0 -1.6 43 2-44 4-46 (48)
20 PLN02153 epithiospecifier prot 98.7 3.8E-06 8.2E-11 77.3 20.0 171 111-294 101-300 (341)
21 PLN02193 nitrile-specifier pro 98.6 6.9E-06 1.5E-10 78.8 20.5 155 170-335 193-360 (470)
22 smart00256 FBOX A Receptor for 98.6 5E-09 1.1E-13 64.1 -1.4 39 4-42 1-39 (41)
23 PRK14131 N-acetylneuraminic ac 98.5 0.00016 3.6E-09 67.4 26.8 155 170-332 189-374 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.4 5.7E-05 1.2E-09 69.7 19.9 92 170-262 168-266 (346)
25 TIGR03548 mutarot_permut cycli 98.2 9E-05 2E-09 67.6 16.3 140 181-334 52-202 (323)
26 KOG4693 Uncharacterized conser 97.8 0.0011 2.3E-08 56.6 14.6 226 98-338 31-288 (392)
27 KOG1230 Protein containing rep 97.8 0.00097 2.1E-08 60.2 15.1 215 111-338 98-352 (521)
28 KOG4693 Uncharacterized conser 97.7 0.0011 2.3E-08 56.5 12.5 165 111-287 105-285 (392)
29 KOG0379 Kelch repeat-containin 97.3 0.016 3.4E-07 55.9 17.2 160 171-337 89-260 (482)
30 KOG2120 SCF ubiquitin ligase, 97.2 6.1E-05 1.3E-09 65.3 -0.9 38 2-39 99-136 (419)
31 KOG0379 Kelch repeat-containin 97.1 0.046 9.9E-07 52.7 17.8 182 96-289 118-312 (482)
32 PF13964 Kelch_6: Kelch motif 96.5 0.0068 1.5E-07 38.3 4.8 42 198-239 6-48 (50)
33 KOG2997 F-box protein FBX9 [Ge 96.3 0.00068 1.5E-08 59.2 -0.8 44 1-44 107-155 (366)
34 PF02191 OLF: Olfactomedin-lik 96.3 0.2 4.4E-06 43.6 14.3 124 197-336 72-213 (250)
35 smart00284 OLF Olfactomedin-li 96.3 0.27 5.9E-06 42.6 14.5 126 197-335 77-217 (255)
36 KOG1230 Protein containing rep 96.2 0.11 2.4E-06 47.4 12.3 151 171-327 99-276 (521)
37 PF01344 Kelch_1: Kelch motif; 96.1 0.014 3.1E-07 36.2 4.7 41 198-238 6-47 (47)
38 KOG0281 Beta-TrCP (transducin 95.9 0.0014 3.1E-08 57.7 -0.9 42 1-42 75-120 (499)
39 KOG2055 WD40 repeat protein [G 95.7 0.54 1.2E-05 43.5 14.4 116 199-333 264-381 (514)
40 PF13360 PQQ_2: PQQ-like domai 95.7 1.2 2.6E-05 38.1 17.4 191 100-332 35-236 (238)
41 PF07893 DUF1668: Protein of u 95.2 1.5 3.2E-05 40.3 16.1 151 94-263 69-253 (342)
42 PF07646 Kelch_2: Kelch motif; 95.1 0.064 1.4E-06 33.6 4.8 40 198-237 6-47 (49)
43 COG4257 Vgb Streptogramin lyas 94.9 2.1 4.6E-05 37.3 14.8 223 95-336 66-315 (353)
44 KOG0274 Cdc4 and related F-box 94.9 4 8.8E-05 39.9 18.7 42 1-42 108-149 (537)
45 COG3055 Uncharacterized protei 94.3 1.2 2.5E-05 40.3 12.2 184 170-363 113-363 (381)
46 KOG4152 Host cell transcriptio 93.1 3.4 7.5E-05 39.2 13.5 211 111-335 57-311 (830)
47 PF13360 PQQ_2: PQQ-like domai 92.7 5.8 0.00013 33.8 16.1 140 171-333 4-147 (238)
48 PF13418 Kelch_4: Galactose ox 92.5 0.22 4.7E-06 31.1 3.7 40 199-238 7-48 (49)
49 smart00612 Kelch Kelch domain. 92.2 0.32 6.9E-06 29.6 4.2 25 169-193 14-38 (47)
50 PF08450 SGL: SMP-30/Gluconola 92.1 7.3 0.00016 33.7 24.9 206 96-337 6-224 (246)
51 KOG0316 Conserved WD40 repeat- 92.0 7.2 0.00016 33.3 15.3 215 101-363 28-250 (307)
52 KOG3545 Olfactomedin and relat 91.0 4.7 0.0001 34.7 10.9 141 180-335 56-211 (249)
53 PF10282 Lactonase: Lactonase, 90.9 13 0.00028 34.2 17.0 121 203-335 154-286 (345)
54 PF13964 Kelch_6: Kelch motif 90.6 0.55 1.2E-05 29.4 4.1 23 110-132 27-49 (50)
55 PF07762 DUF1618: Protein of u 90.1 2.7 5.7E-05 32.6 8.4 74 220-293 6-101 (131)
56 PF01344 Kelch_1: Kelch motif; 89.7 0.48 1E-05 29.1 3.2 24 166-189 24-47 (47)
57 PF07250 Glyoxal_oxid_N: Glyox 89.4 13 0.00029 32.2 13.8 169 169-353 45-222 (243)
58 PF07433 DUF1513: Protein of u 89.0 16 0.00036 32.7 19.2 214 103-333 19-254 (305)
59 KOG0649 WD40 repeat protein [G 88.4 4.6 9.9E-05 34.6 8.8 96 267-365 82-181 (325)
60 PF02897 Peptidase_S9_N: Proly 88.3 23 0.00049 33.4 20.0 119 201-334 285-412 (414)
61 PF07893 DUF1668: Protein of u 88.1 21 0.00046 32.8 15.1 109 221-333 87-214 (342)
62 PRK11138 outer membrane biogen 88.1 23 0.0005 33.2 19.8 188 100-330 119-316 (394)
63 cd01207 Ena-Vasp Enabled-VASP- 87.9 2.3 5.1E-05 31.8 6.2 56 111-175 9-64 (111)
64 PRK11138 outer membrane biogen 87.3 18 0.00039 33.9 13.5 112 198-332 64-184 (394)
65 PLN02772 guanylate kinase 87.3 4.3 9.4E-05 37.7 8.9 75 198-275 29-107 (398)
66 smart00612 Kelch Kelch domain. 86.8 2 4.3E-05 25.9 4.7 22 220-241 15-37 (47)
67 COG4257 Vgb Streptogramin lyas 86.7 15 0.00033 32.3 11.1 126 93-241 191-318 (353)
68 KOG0647 mRNA export protein (c 86.3 8.3 0.00018 34.1 9.5 75 254-338 40-114 (347)
69 PRK11028 6-phosphogluconolacto 86.0 27 0.00057 31.7 14.4 138 170-327 12-157 (330)
70 PF13415 Kelch_3: Galactose ox 85.3 2.1 4.5E-05 26.6 4.2 39 203-241 1-41 (49)
71 KOG4341 F-box protein containi 84.8 0.19 4.1E-06 46.2 -1.1 37 3-39 74-110 (483)
72 TIGR03300 assembly_YfgL outer 84.8 25 0.00054 32.6 13.1 107 198-331 60-168 (377)
73 PF05096 Glu_cyclase_2: Glutam 83.9 29 0.00063 30.4 13.4 112 202-335 54-167 (264)
74 KOG1274 WD40 repeat protein [G 83.0 60 0.0013 33.4 20.2 121 200-333 104-225 (933)
75 TIGR03866 PQQ_ABC_repeats PQQ- 82.8 32 0.00069 30.1 21.9 190 109-333 51-244 (300)
76 PLN00181 protein SPA1-RELATED; 82.5 65 0.0014 33.4 23.9 191 103-329 547-741 (793)
77 PF13418 Kelch_4: Galactose ox 80.4 3.8 8.2E-05 25.2 4.0 23 167-189 26-48 (49)
78 PF10282 Lactonase: Lactonase, 80.1 48 0.0011 30.4 25.7 172 144-334 146-332 (345)
79 COG2706 3-carboxymuconate cycl 79.9 47 0.001 30.2 16.2 124 203-336 155-286 (346)
80 COG4946 Uncharacterized protei 79.7 58 0.0012 31.0 15.0 141 171-334 288-439 (668)
81 TIGR01640 F_box_assoc_1 F-box 79.1 39 0.00085 28.8 11.9 119 201-336 3-137 (230)
82 COG1520 FOG: WD40-like repeat 78.9 55 0.0012 30.3 13.8 140 170-333 35-178 (370)
83 PRK04043 tolB translocation pr 77.2 68 0.0015 30.5 21.0 190 110-335 212-409 (419)
84 TIGR03074 PQQ_membr_DH membran 77.2 55 0.0012 33.7 13.1 32 196-234 187-220 (764)
85 PF08450 SGL: SMP-30/Gluconola 76.4 49 0.0011 28.5 14.9 113 199-333 5-129 (246)
86 KOG0294 WD40 repeat-containing 75.9 60 0.0013 29.2 11.9 114 198-333 47-164 (362)
87 COG2706 3-carboxymuconate cycl 75.8 63 0.0014 29.4 13.9 121 205-334 53-183 (346)
88 PF05096 Glu_cyclase_2: Glutam 74.5 60 0.0013 28.5 17.2 144 165-333 63-210 (264)
89 TIGR03300 assembly_YfgL outer 74.4 73 0.0016 29.5 21.7 188 100-330 104-301 (377)
90 PF07646 Kelch_2: Kelch motif; 74.1 7.8 0.00017 23.9 4.1 38 247-286 5-46 (49)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.5 60 0.0013 31.9 12.0 120 197-333 63-196 (527)
92 COG3386 Gluconolactonase [Carb 73.2 72 0.0016 28.9 12.0 110 204-333 37-158 (307)
93 cd01206 Homer Homer type EVH1 73.0 10 0.00022 28.1 4.9 41 110-162 10-51 (111)
94 PF14583 Pectate_lyase22: Olig 72.8 83 0.0018 29.4 14.0 105 219-333 167-279 (386)
95 KOG1963 WD40 repeat protein [G 72.4 1.2E+02 0.0026 31.0 17.8 105 220-333 432-546 (792)
96 PF13415 Kelch_3: Galactose ox 69.3 11 0.00024 23.2 4.0 23 111-133 19-41 (49)
97 smart00564 PQQ beta-propeller 68.7 14 0.0003 20.3 4.0 23 310-332 8-30 (33)
98 PF01011 PQQ: PQQ enzyme repea 67.0 12 0.00027 21.6 3.6 24 310-333 2-25 (38)
99 KOG0293 WD40 repeat-containing 66.4 1.2E+02 0.0025 28.5 15.4 139 170-333 334-477 (519)
100 KOG0315 G-protein beta subunit 65.4 93 0.002 27.1 19.9 119 221-348 147-266 (311)
101 TIGR03866 PQQ_ABC_repeats PQQ- 64.8 95 0.0021 27.0 22.2 179 109-330 9-191 (300)
102 PF13570 PQQ_3: PQQ-like domai 64.3 11 0.00024 22.0 3.1 25 198-229 16-40 (40)
103 KOG1539 WD repeat protein [Gen 63.8 1.4E+02 0.0029 30.7 11.8 125 199-333 455-613 (910)
104 COG4946 Uncharacterized protei 63.7 1.4E+02 0.0031 28.6 20.3 98 220-333 382-484 (668)
105 cd00200 WD40 WD40 domain, foun 62.6 94 0.002 26.2 20.3 95 221-331 116-212 (289)
106 KOG0640 mRNA cleavage stimulat 59.8 1.1E+02 0.0024 27.5 9.4 149 167-333 235-390 (430)
107 KOG2055 WD40 repeat protein [G 59.6 1.6E+02 0.0035 27.9 16.4 189 96-315 264-454 (514)
108 PF06433 Me-amine-dh_H: Methyl 59.1 1.5E+02 0.0032 27.3 12.7 118 199-332 189-326 (342)
109 PRK04043 tolB translocation pr 58.7 1.7E+02 0.0036 27.8 13.7 103 221-337 214-320 (419)
110 TIGR02658 TTQ_MADH_Hv methylam 57.4 1.6E+02 0.0035 27.2 20.6 212 96-332 52-293 (352)
111 PF03088 Str_synth: Strictosid 57.2 28 0.00061 24.9 4.6 16 318-333 37-52 (89)
112 PRK00178 tolB translocation pr 56.7 1.8E+02 0.0039 27.5 20.1 189 110-334 222-414 (430)
113 cd00837 EVH1 EVH1 (Enabled, Va 56.4 71 0.0015 23.5 6.9 54 111-176 9-62 (104)
114 PF13859 BNR_3: BNR repeat-lik 55.0 1.5E+02 0.0033 26.9 10.0 98 181-284 101-211 (310)
115 PRK04792 tolB translocation pr 54.9 2E+02 0.0043 27.5 18.2 144 169-333 241-389 (448)
116 KOG2321 WD40 repeat protein [G 54.2 2.3E+02 0.0049 27.9 12.8 31 95-125 181-211 (703)
117 PF00568 WH1: WH1 domain; Int 54.0 43 0.00093 25.0 5.5 39 111-162 16-55 (111)
118 PRK04922 tolB translocation pr 53.5 2E+02 0.0044 27.2 20.2 145 168-333 226-375 (433)
119 KOG0291 WD40-repeat-containing 51.9 2.8E+02 0.0061 28.3 13.4 121 198-330 250-384 (893)
120 KOG1446 Histone H3 (Lys4) meth 51.2 1.8E+02 0.004 26.0 22.2 104 221-333 163-269 (311)
121 KOG0283 WD40 repeat-containing 50.5 38 0.00083 34.0 5.8 57 266-333 432-488 (712)
122 PRK05137 tolB translocation pr 49.6 2.4E+02 0.0051 26.8 21.3 187 111-333 182-373 (435)
123 PF12458 DUF3686: ATPase invol 48.3 1.9E+02 0.0041 27.4 9.4 128 111-274 253-384 (448)
124 KOG0296 Angio-associated migra 47.6 1.1E+02 0.0023 28.2 7.6 29 302-330 196-224 (399)
125 PF12217 End_beta_propel: Cata 46.8 1.7E+02 0.0037 25.7 8.4 62 201-263 198-259 (367)
126 KOG0283 WD40 repeat-containing 46.5 3.4E+02 0.0073 27.7 17.5 98 99-213 378-482 (712)
127 cd00216 PQQ_DH Dehydrogenases 46.4 2.8E+02 0.0062 26.8 15.8 127 200-333 106-271 (488)
128 KOG0295 WD40 repeat-containing 46.3 85 0.0018 28.8 6.8 67 254-333 304-371 (406)
129 PLN02919 haloacid dehalogenase 46.2 4.2E+02 0.0092 28.8 23.8 222 95-333 573-840 (1057)
130 KOG0291 WD40-repeat-containing 45.6 3.5E+02 0.0076 27.7 19.9 112 199-330 440-554 (893)
131 COG3055 Uncharacterized protei 44.4 55 0.0012 29.9 5.4 45 169-215 317-361 (381)
132 KOG0265 U5 snRNP-specific prot 44.4 2.4E+02 0.0051 25.3 10.7 99 220-333 112-211 (338)
133 KOG0296 Angio-associated migra 44.3 2.6E+02 0.0056 25.8 12.3 100 220-333 86-185 (399)
134 KOG4547 WD40 repeat-containing 44.1 2.7E+02 0.0058 27.2 10.0 115 221-351 81-195 (541)
135 PRK03629 tolB translocation pr 44.1 2.9E+02 0.0063 26.2 21.0 145 169-334 222-371 (429)
136 PTZ00421 coronin; Provisional 43.8 3.2E+02 0.0069 26.7 13.9 54 267-330 149-202 (493)
137 KOG0647 mRNA export protein (c 43.1 2.5E+02 0.0054 25.3 14.8 92 221-330 95-188 (347)
138 PRK11028 6-phosphogluconolacto 43.1 2.5E+02 0.0054 25.2 22.5 121 203-334 136-268 (330)
139 KOG2502 Tub family proteins [G 42.5 14 0.0003 33.5 1.4 36 2-37 46-89 (355)
140 KOG0265 U5 snRNP-specific prot 42.3 2.2E+02 0.0048 25.5 8.5 67 253-330 58-124 (338)
141 PF13854 Kelch_5: Kelch motif 41.3 59 0.0013 19.2 3.7 32 198-229 9-41 (42)
142 TIGR02658 TTQ_MADH_Hv methylam 40.9 3E+02 0.0065 25.5 22.6 198 96-333 110-338 (352)
143 KOG0301 Phospholipase A2-activ 40.2 4.1E+02 0.0088 26.8 13.3 86 221-325 201-287 (745)
144 PRK04792 tolB translocation pr 40.1 3.4E+02 0.0074 25.9 21.0 190 110-335 241-434 (448)
145 KOG2321 WD40 repeat protein [G 39.7 3.9E+02 0.0084 26.4 10.3 113 202-333 144-265 (703)
146 PF13013 F-box-like_2: F-box-l 39.5 5.8 0.00013 29.6 -1.2 28 2-29 23-50 (109)
147 KOG2437 Muskelin [Signal trans 38.1 44 0.00095 32.1 3.9 144 115-262 233-394 (723)
148 COG0823 TolB Periplasmic compo 37.9 2.5E+02 0.0054 26.8 9.1 103 221-337 219-325 (425)
149 PTZ00420 coronin; Provisional 37.9 2.6E+02 0.0055 27.9 9.4 66 253-330 136-201 (568)
150 PF14339 DUF4394: Domain of un 37.0 1.1E+02 0.0025 26.3 6.0 54 100-160 37-92 (236)
151 PTZ00421 coronin; Provisional 36.9 4.1E+02 0.0089 25.9 22.7 203 101-333 87-297 (493)
152 KOG0279 G protein beta subunit 36.6 3.1E+02 0.0067 24.4 10.4 90 249-351 70-159 (315)
153 KOG4152 Host cell transcriptio 36.3 2.8E+02 0.006 27.0 8.7 165 170-338 57-250 (830)
154 KOG0293 WD40 repeat-containing 35.7 1.2E+02 0.0026 28.4 6.2 73 248-331 317-389 (519)
155 KOG0319 WD40-repeat-containing 35.7 4.9E+02 0.011 26.5 15.8 193 96-330 25-226 (775)
156 PLN02772 guanylate kinase 35.3 1.8E+02 0.004 27.3 7.5 82 247-333 28-115 (398)
157 KOG2437 Muskelin [Signal trans 35.2 63 0.0014 31.1 4.4 130 199-334 266-420 (723)
158 TIGR02276 beta_rpt_yvtn 40-res 34.7 92 0.002 17.8 4.2 29 307-335 2-32 (42)
159 PF02239 Cytochrom_D1: Cytochr 34.3 3.9E+02 0.0084 24.9 19.6 189 109-333 14-209 (369)
160 PTZ00334 trans-sialidase; Prov 34.0 3.2E+02 0.0068 28.4 9.4 82 198-284 264-348 (780)
161 PF08268 FBA_3: F-box associat 33.3 2.2E+02 0.0047 21.6 10.2 92 168-259 18-118 (129)
162 KOG0641 WD40 repeat protein [G 32.5 3.2E+02 0.007 23.4 13.7 34 298-332 233-267 (350)
163 PRK05137 tolB translocation pr 32.3 4.4E+02 0.0096 24.9 21.2 189 110-334 225-420 (435)
164 KOG2096 WD40 repeat protein [G 32.2 1.2E+02 0.0026 27.5 5.4 69 253-329 97-166 (420)
165 KOG0286 G-protein beta subunit 32.2 3.8E+02 0.0081 24.1 17.2 184 109-331 75-264 (343)
166 PF00930 DPPIV_N: Dipeptidyl p 32.0 4E+02 0.0087 24.4 13.1 110 220-333 158-275 (353)
167 PF00400 WD40: WD domain, G-be 30.9 1E+02 0.0022 17.1 6.9 26 299-324 14-39 (39)
168 KOG0310 Conserved WD40 repeat- 30.2 5E+02 0.011 24.9 14.9 156 169-351 47-207 (487)
169 cd00200 WD40 WD40 domain, foun 30.0 3.2E+02 0.007 22.7 21.8 188 97-331 58-254 (289)
170 KOG0279 G protein beta subunit 29.9 4E+02 0.0087 23.7 18.5 187 109-324 125-311 (315)
171 TIGR02800 propeller_TolB tol-p 29.8 4.6E+02 0.01 24.4 21.2 145 169-334 213-362 (417)
172 KOG0315 G-protein beta subunit 29.7 3.9E+02 0.0084 23.5 14.7 181 109-329 18-200 (311)
173 KOG0319 WD40-repeat-containing 29.5 6.2E+02 0.014 25.8 12.3 102 221-338 41-146 (775)
174 KOG0271 Notchless-like WD40 re 28.5 1.7E+02 0.0038 27.1 5.9 37 302-338 163-199 (480)
175 KOG1310 WD40 repeat protein [G 26.8 4.2E+02 0.0092 26.1 8.3 111 99-229 59-179 (758)
176 KOG2048 WD40 repeat protein [G 26.8 6.7E+02 0.015 25.3 15.9 197 94-326 208-411 (691)
177 KOG0639 Transducin-like enhanc 26.4 83 0.0018 30.2 3.7 68 253-330 476-543 (705)
178 PRK02889 tolB translocation pr 26.4 5.6E+02 0.012 24.2 13.8 117 203-337 207-327 (427)
179 KOG0295 WD40 repeat-containing 26.0 3E+02 0.0065 25.4 6.9 98 220-333 130-230 (406)
180 PF02191 OLF: Olfactomedin-lik 25.9 3.7E+02 0.008 23.5 7.5 42 198-241 175-216 (250)
181 KOG1036 Mitotic spindle checkp 25.4 5.1E+02 0.011 23.4 11.6 92 221-330 76-167 (323)
182 TIGR02800 propeller_TolB tol-p 25.1 5.6E+02 0.012 23.8 20.1 187 111-333 214-404 (417)
183 KOG0292 Vesicle coat complex C 25.1 5.9E+02 0.013 26.9 9.3 84 267-362 229-314 (1202)
184 PF07250 Glyoxal_oxid_N: Glyox 24.8 2.4E+02 0.0051 24.6 6.0 88 221-315 47-136 (243)
185 KOG3926 F-box proteins [Amino 24.6 27 0.00058 30.5 0.2 39 2-40 203-242 (332)
186 PF14870 PSII_BNR: Photosynthe 23.8 5.4E+02 0.012 23.2 17.2 136 180-334 47-182 (302)
187 KOG0772 Uncharacterized conser 23.8 4.5E+02 0.0098 25.6 7.9 98 222-329 295-397 (641)
188 KOG0266 WD40 repeat-containing 23.4 6.6E+02 0.014 24.0 19.5 198 99-329 212-412 (456)
189 KOG0300 WD40 repeat-containing 23.2 4.7E+02 0.01 23.7 7.5 58 267-334 379-436 (481)
190 KOG0321 WD40 repeat-containing 23.1 3.8E+02 0.0083 26.8 7.4 54 221-276 75-132 (720)
191 cd00260 Sialidase Sialidases o 23.0 5.7E+02 0.012 23.2 17.3 90 198-289 150-242 (351)
192 KOG0321 WD40 repeat-containing 22.5 6.8E+02 0.015 25.2 8.9 34 302-335 277-310 (720)
193 PF07861 WND: WisP family N-Te 21.9 1.2E+02 0.0027 24.9 3.5 31 94-124 33-63 (263)
194 KOG0318 WD40 repeat stress pro 21.5 7.6E+02 0.017 24.2 8.9 73 253-335 454-526 (603)
195 PF14157 YmzC: YmzC-like prote 21.2 1.5E+02 0.0033 19.6 3.1 16 319-334 42-57 (63)
196 PRK04922 tolB translocation pr 21.2 7.1E+02 0.015 23.5 20.0 190 110-335 227-420 (433)
197 KOG2445 Nuclear pore complex c 20.4 6.5E+02 0.014 22.8 13.0 89 246-337 117-221 (361)
198 KOG0649 WD40 repeat protein [G 20.4 5.9E+02 0.013 22.3 15.0 119 198-337 118-247 (325)
199 KOG0650 WD40 repeat nucleolar 20.3 1.7E+02 0.0037 28.9 4.5 38 298-335 609-648 (733)
200 PRK01742 tolB translocation pr 20.2 7.4E+02 0.016 23.4 19.4 140 169-333 227-368 (429)
201 KOG0289 mRNA splicing factor [ 20.1 7.7E+02 0.017 23.5 12.8 135 171-326 370-506 (506)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.1e-35 Score=257.73 Aligned_cols=223 Identities=23% Similarity=0.346 Sum_probs=167.8
Q ss_pred EecccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEec-ccceeEEEEE
Q 017755 97 IGCCHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSY-KVDYLEVIIY 175 (366)
Q Consensus 97 ~~s~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~-~~~~~~~~vy 175 (366)
++|||||||+... ..++||||+||+++.||+++... .. . ....++||||+.+++||||++.... ......++||
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~-~~-~--~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRR-SN-K--ESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcc-cc-c--ccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 3799999999864 78999999999999999876432 10 0 1226799999999999999997642 2245789999
Q ss_pred EcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCC-CeeeEEEEEC
Q 017755 176 SLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKG-GFCSQVGVLR 253 (366)
Q Consensus 176 ss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~-~~~~~l~~~~ 253 (366)
++++++||.+...+....... .+|++||.+||++....+. ....|++||+.+|+|+ .+++|....+ .....|++++
T Consensus 76 s~~~~~Wr~~~~~~~~~~~~~-~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~ 153 (230)
T TIGR01640 76 TLGSNSWRTIECSPPHHPLKS-RGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYK 153 (230)
T ss_pred EeCCCCccccccCCCCccccC-CeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEEEEC
Confidence 999999999985443322222 3899999999999765321 1137999999999999 5899976532 1356899999
Q ss_pred CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcC--Ce-EEEEECCCC
Q 017755 254 GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHS--RC-LHWYNLKDH 328 (366)
Q Consensus 254 G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~--~~-l~~ydl~t~ 328 (366)
|+||++.......+++||+|++++. .+|+++++|+...++... ...++++..+|+ |++.... .. +++||++++
T Consensus 154 G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 154 GKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred CEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeCCCCceEEEEEeccCC
Confidence 9999999865433699999998864 569999999875443322 255889988888 5554432 33 999999885
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.76 E-value=1.2e-16 Score=130.55 Aligned_cols=150 Identities=26% Similarity=0.464 Sum_probs=107.7
Q ss_pred ceEECCeEEEEEeeCCCCCCcceEEEEECCCcee-EEECCCCCCC-CCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEee
Q 017755 199 GVFIAGALHWLAARGSVRTGQNMILAFDLKSEKF-YEVQQPHGMK-GGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 199 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~-~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~ 275 (366)
+|++||.+||++........ ..|++||+.+|+| +.+++|.... ......|++. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred CEEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 58999999999988653211 2799999999999 8889998886 3346677555 68999998755544799999997
Q ss_pred cCC-CCCeeEEEEecCCCCCCcc---eeEEEEEEeCCCeEEEEEc-C------CeEEEEECCCCcEEEEEEecCCCceee
Q 017755 276 YGS-QQSWSKLCSFSKMLHETCY---YTEAFAFSKDGDKALIYQH-S------RCLHWYNLKDHKQDVIEIRNENQSFWD 344 (366)
Q Consensus 276 ~~~-~~~W~~~~~i~~~~~~~~~---~~~~~~~~~~g~~i~l~~~-~------~~l~~ydl~t~~~~~v~~~~~~~~~~~ 344 (366)
++. .++|+|.++|+........ ....+.+..+++ +++... + ..++.|+ +++..+++.+...+..++.
T Consensus 80 ~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~-vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~ 157 (164)
T PF07734_consen 80 YGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKK-VLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPS 157 (164)
T ss_pred eccCcceEEEEEEEecCCCCCcccccccceEEEeCCCe-EEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCC
Confidence 642 7899999999977765432 112233444455 555432 1 2378888 7888888877443135777
Q ss_pred eeeeecc
Q 017755 345 AFICMGS 351 (366)
Q Consensus 345 ~~~y~~s 351 (366)
+..|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 8899987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1.2e-15 Score=119.45 Aligned_cols=112 Identities=28% Similarity=0.457 Sum_probs=85.7
Q ss_pred ceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCC-CCCeeeEEEEECCEEEEEEecCCC--CeEEEEEEee
Q 017755 199 GVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVLRGCLWINSYYHDE--PRCDIWVMKE 275 (366)
Q Consensus 199 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~-~~~~~~~l~~~~G~L~~v~~~~~~--~~l~iW~l~~ 275 (366)
|+++||.+||++... ......|++||+++|+|+.+++|... .......|.+++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 589999999999882 22346999999999999999999222 222578999999999999886643 3699999999
Q ss_pred cCCCCCeeEEEEecCCCCCC--c-ceeEEEEEEeCCCeEEE
Q 017755 276 YGSQQSWSKLCSFSKMLHET--C-YYTEAFAFSKDGDKALI 313 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~~~--~-~~~~~~~~~~~g~~i~l 313 (366)
++ +++|++.+.+....... . ....++++.++|++|+.
T Consensus 79 ~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 86 58999876644333211 1 26788999999996665
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.52 E-value=3.7e-12 Score=114.70 Aligned_cols=323 Identities=11% Similarity=0.084 Sum_probs=160.5
Q ss_pred CCCcHHHHHHHHccCCcc-ceeeeeecccccccccCChhHHHHHHHhhhcCCCceEEEeeccCCCCeeEEecCCCCC-Cc
Q 017755 2 SSLPLDLISDILSRLPVK-PLLRFRCVSKCFCGLIDSQDFVKLHLNQAIETNSGLSLIVPTLTSDNKFFSLELDSVD-NP 79 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP~~-~l~r~~~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 79 (366)
++||+|||..|..|||-+ +++|||+||++||+.+.... ...+ ....|+++......... +.... ..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~ 72 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----KKNP--FRTRPLILFNPINPSET-----LTDDRSYI 72 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----ccCC--cccccccccCcccCCCC-----cccccccc
Confidence 579999999999999844 99999999999999877421 0000 11113333210000000 00000 00
Q ss_pred eeeccCCccCCCCceEE-E--ecccceEEeee---cCceEEEEcCCCcceEecCCCCCCCccCCCCCCe-eEeEE-eecC
Q 017755 80 VEIEYPFKKYNRGHTSV-I--GCCHGLLAMFN---RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNF-HFDGF-GYDA 151 (366)
Q Consensus 80 ~~~~~p~~~~~~~~~~~-~--~s~nGLl~~~~---~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~-~~~~~-g~d~ 151 (366)
......+.. .....+ . ++..|+|.... ..+.+.+.||.++.-..+|+..... -.+..... -.+.+ +.+.
T Consensus 73 ~~~~~~ls~--~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnl-l~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 73 SRPGAFLSR--AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDL-LEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred ccccceeee--eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCcccee-eeeEEEEccceEEEEeccc
Confidence 000000000 000111 1 34678876653 3578999999999977776532221 00000000 00111 1111
Q ss_pred C---CCCe--eEEEEEEeccc-ceeEEEEEEcC------CCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCc
Q 017755 152 S---TDDY--KLVRIIQSYKV-DYLEVIIYSLK------ADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQ 219 (366)
Q Consensus 152 ~---~~~y--kVv~~~~~~~~-~~~~~~vyss~------~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~ 219 (366)
. ...| |++......++ +...+-|+.-+ .++|..++..... . ..-|+.+|++|-+...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~~--~--~DIi~~kGkfYAvD~~G------ 219 (373)
T PLN03215 150 RRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGYH--F--SDIIVHKGQTYALDSIG------ 219 (373)
T ss_pred ccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCCCce--e--eEEEEECCEEEEEcCCC------
Confidence 0 0113 22222111111 11122222221 3678877532221 1 13689999999985543
Q ss_pred ceEEEEECC--CceeEE-EC-CCCCCCCCeeeEEEEECCEEEEEEecC---------------CCCeEEEEEEeecCCCC
Q 017755 220 NMILAFDLK--SEKFYE-VQ-QPHGMKGGFCSQVGVLRGCLWINSYYH---------------DEPRCDIWVMKEYGSQQ 280 (366)
Q Consensus 220 ~~i~~fD~~--~e~~~~-i~-~P~~~~~~~~~~l~~~~G~L~~v~~~~---------------~~~~l~iW~l~~~~~~~ 280 (366)
.+.++|.. ..+... +. -+.....+....|++..|+|++|.... .+..++|+.++. ...
T Consensus 220 -~l~~i~~~l~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~--~~~ 296 (373)
T PLN03215 220 -IVYWINSDLEFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD--ELA 296 (373)
T ss_pred -eEEEEecCCceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC--CCC
Confidence 46666633 222211 11 011011113578999999999988732 123688898885 347
Q ss_pred CeeEEEEecCCCCC-Ccc-eeEEEE--E-EeCCCeEEEEEcCCeEEEEECCCCcEEEEEEecCCCceeeeeeeecccc
Q 017755 281 SWSKLCSFSKMLHE-TCY-YTEAFA--F-SKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNENQSFWDAFICMGSLA 353 (366)
Q Consensus 281 ~W~~~~~i~~~~~~-~~~-~~~~~~--~-~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~~~~~~~~~~~~~y~~sl~ 353 (366)
.|+++.+++...+. +.. ..+..+ + .-.++.|++..... ..+||++.++...+...-.........+|++|++
T Consensus 297 ~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~-~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (373)
T PLN03215 297 KWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTM-PKVFKLDNGNGSSIETTISESSQSSFEMFVPSFL 373 (373)
T ss_pred cEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCc-ceEEECCCCCccceEeecCccccchheeeccccC
Confidence 89999988766542 111 111111 0 11357788876554 9999999999877743211012233355666653
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=111.89 Aligned_cols=201 Identities=11% Similarity=0.136 Sum_probs=127.6
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCc
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPY 190 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~ 190 (366)
..+..+||.+++|..+|+++... . ......+ + +.-.|++-. ........+++|++.+++|+.++++|.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R-~-----~~~~~~~--~---g~IYviGG~-~~~~~~~sve~Ydp~~~~W~~~~~mp~ 387 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNR-C-----RFSLAVI--D---DTIYAIGGQ-NGTNVERTIECYTMGDDKWKMLPDMPI 387 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchh-h-----ceeEEEE--C---CEEEEECCc-CCCCCCceEEEEECCCCeEEECCCCCc
Confidence 35789999999999999987554 1 1122122 1 222233221 111223569999999999999998887
Q ss_pred eeecCCCCceEECCeEEEEEeeCCCC-----------------CCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEE
Q 017755 191 YILDDRCNGVFIAGALHWLAARGSVR-----------------TGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVL 252 (366)
Q Consensus 191 ~~~~~~~~~v~~~G~lyw~~~~~~~~-----------------~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~ 252 (366)
..... ..+.++|++|.+++..... .....+.+||+.+++|+.+ ++|... ....++++
T Consensus 388 ~r~~~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r---~~~~~~~~ 462 (557)
T PHA02713 388 ALSSY--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT---IRPGVVSH 462 (557)
T ss_pred ccccc--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc---ccCcEEEE
Confidence 66443 3678999999998754210 0124799999999999987 555543 34568899
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCC-C-CCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc-CC--eEEEEECCC
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGS-Q-QSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH-SR--CLHWYNLKD 327 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~--~l~~ydl~t 327 (366)
+|+||++.+....... .-..+.|+. . .+|+.+..++.... ...... . +|. |++... ++ .+-.||++|
T Consensus 463 ~~~IYv~GG~~~~~~~-~~~ve~Ydp~~~~~W~~~~~m~~~r~----~~~~~~-~-~~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNV-KTCIFRYNTNTYNGWELITTTESRLS----ALHTIL-H-DNT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCcc-ceeEEEecCCCCCCeeEccccCcccc----cceeEE-E-CCE-EEEEeeecceeehhhcCccc
Confidence 9999999875432111 111233333 3 47998775554332 122222 2 444 666543 22 489999999
Q ss_pred CcEEEEEEe
Q 017755 328 HKQDVIEIR 336 (366)
Q Consensus 328 ~~~~~v~~~ 336 (366)
++|+.+.=+
T Consensus 535 ~~W~~~~~~ 543 (557)
T PHA02713 535 YEWNHICHQ 543 (557)
T ss_pred ccccchhhh
Confidence 999988443
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.25 E-value=4.1e-10 Score=109.37 Aligned_cols=196 Identities=12% Similarity=0.173 Sum_probs=133.2
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEE-ecccceeEEEEEEcCCCcEEecCCCC
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQ-SYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
..+..+||.+++|..+|++...+ .. .....+ +.++.++.. ++......+|.|+..+++|..+++++
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R-~~-----~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKR-SD-----FGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred ceEEEecCCCCceeccCCccCcc-cc-----ceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 46899999999999999998664 21 111111 123333332 23345567999999999999999887
Q ss_pred ceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 190 YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
...... ..+.++|.+|-+++.+........+.+||+.+++|+.+ +++... ....+++++|+||++.+..+...+
T Consensus 416 ~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R---~~~g~a~~~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 416 TRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR---SGFGVAVLNGKIYVVGGFDGTSAL 490 (571)
T ss_pred cceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc---ccceEEEECCEEEEECCccCCCcc
Confidence 744443 37899999999998765443446999999999999987 666655 355699999999999997652122
Q ss_pred EEEEEeecC-CCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------CeEEEEECCCCcEEEE
Q 017755 269 DIWVMKEYG-SQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 269 ~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~ydl~t~~~~~v 333 (366)
+- .+-++ ....|+.+..+..... ..++...++.+|+.... ..+-.||+++++|+.+
T Consensus 491 ~~--VE~ydp~~~~W~~v~~m~~~rs-------~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 491 SS--VERYDPETNQWTMVAPMTSPRS-------AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred ce--EEEEcCCCCceeEcccCccccc-------cccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 22 22221 2567998854433322 22333333446666432 2499999999999988
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.21 E-value=1.6e-09 Score=105.60 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=123.5
Q ss_pred eEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEe--cccceeEEEEEEcCCCcEEecCCCC
Q 017755 112 GMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQS--YKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 112 ~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~--~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
.+..+||.+++|..+++++... . ......+ + + +|..+... .......++.|++.++.|..++++|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-~-----~~~~a~l--~---~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~ 339 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-I-----NYASAIV--D---N--EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI 339 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-c-----ceEEEEE--C---C--EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc
Confidence 4678999999999999887553 1 1111111 1 2 23333221 1122356899999999999999887
Q ss_pred ceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCC--
Q 017755 190 YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEP-- 266 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~-- 266 (366)
...... ..+.++|++|-+++.... .....+.+||+.+++|+.+ ++|... .....++++|+|+++.+.....
T Consensus 340 ~~R~~~--~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r---~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 340 KNRCRF--SLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIAL---SSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred chhhce--eEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccc---ccccEEEECCEEEEEeCCCccccc
Confidence 655433 378999999999986532 1234799999999999987 666554 2445678899999998754210
Q ss_pred -----------------eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC-------CeEEE
Q 017755 267 -----------------RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS-------RCLHW 322 (366)
Q Consensus 267 -----------------~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-------~~l~~ 322 (366)
.-.+...+. ....|+.+..+..... ...+++ -+|. ||+.... ..+..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~-----~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI-----RPGVVS-HKDD-IYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred ccccccccccccccccccceEEEECC--CCCeEeecCCCCcccc-----cCcEEE-ECCE-EEEEeCCCCCCccceeEEE
Confidence 012333332 2467987664433322 111222 2444 6665431 13679
Q ss_pred EECCC-CcEEEEE
Q 017755 323 YNLKD-HKQDVIE 334 (366)
Q Consensus 323 ydl~t-~~~~~v~ 334 (366)
||+++ ++|+.+.
T Consensus 485 Ydp~~~~~W~~~~ 497 (557)
T PHA02713 485 YNTNTYNGWELIT 497 (557)
T ss_pred ecCCCCCCeeEcc
Confidence 99999 8999883
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.20 E-value=2.3e-09 Score=104.74 Aligned_cols=197 Identities=10% Similarity=0.094 Sum_probs=124.4
Q ss_pred eEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCce
Q 017755 112 GMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPYY 191 (366)
Q Consensus 112 ~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~~ 191 (366)
.++.+||.|++|..+|+++... .. .....+ + +.-.|++-.. .......+++|+..+++|+..+++|..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R-~~-----~~~~~~--~---~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~lp~~ 379 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR-KN-----PGVTVF--N---NRIYVIGGIY-NSISLNTVESWKPGESKWREEPPLIFP 379 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc-cc-----ceEEEE--C---CEEEEEeCCC-CCEecceEEEEcCCCCceeeCCCcCcC
Confidence 6889999999999999887543 11 111111 1 2222222211 112345689999999999999887765
Q ss_pred eecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCC----
Q 017755 192 ILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEP---- 266 (366)
Q Consensus 192 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~---- 266 (366)
.... .++.++|++|-+++..........+..||+.+++|+.+ ++|.... ....+..+|+|+++.+.....
T Consensus 380 r~~~--~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~ 454 (534)
T PHA03098 380 RYNP--CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY---GGCAIYHDGKIYVIGGISYIDNIKV 454 (534)
T ss_pred Cccc--eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc---CceEEEECCEEEEECCccCCCCCcc
Confidence 4332 36789999999988543222235799999999999987 5555442 335677899999998754221
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------CeEEEEECCCCcEEEEE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~ydl~t~~~~~v~ 334 (366)
.-.+|..+. ...+|+.+..++.+.. ...++. -+|. |++.... ..+..||+++++|+.+.
T Consensus 455 ~~~v~~yd~--~~~~W~~~~~~~~~r~-----~~~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 455 YNIVESYNP--VTNKWTELSSLNFPRI-----NASLCI-FNNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cceEEEecC--CCCceeeCCCCCcccc-----cceEEE-ECCE-EEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 123666664 2468987654332221 111222 2455 6665421 24999999999999883
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.20 E-value=1.9e-09 Score=104.70 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=135.1
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEE-Ee-cccceeEEEEEEcCCCcEEecCCC
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRII-QS-YKVDYLEVIIYSLKADTWRRTREF 188 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~-~~~~~~~~~vyss~~~~W~~~~~~ 188 (366)
..+..+||.+++|..+.+++... .+ .....++ + +|..+. .+ +...-..+++|++.+++|..+++|
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r-~~-----~~~~~~~-----~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M 367 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR-CR-----VGVAVLN-----G--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM 367 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc-cc-----ccEEEEC-----C--EEEEEccccCCCcccceEEEecCCCCceeccCCc
Confidence 45778999999999999988665 21 1111111 2 333332 22 334567899999999999999988
Q ss_pred CceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCe
Q 017755 189 PYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPR 267 (366)
Q Consensus 189 p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~ 267 (366)
........ .+.++|.+|-+++.+.. .....+..||+.+++|+.. +++... .....++++|+||++.+......
T Consensus 368 ~~~R~~~~--v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 368 NTKRSDFG--VAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCccccce--eEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcce---eeeEEEEECCEEEEEcCcCCCcc
Confidence 87665544 68999999999988742 2335899999999999988 566633 46788999999999999655421
Q ss_pred EEEEEEeecC-CCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------CeEEEEECCCCcEEEEE
Q 017755 268 CDIWVMKEYG-SQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 268 l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~ydl~t~~~~~v~ 334 (366)
.+=..+-|+ ...+|..+-.+..... ...+++. +|. ||..... ..+-.||+++++|+.+.
T Consensus 442 -~l~sve~YDP~t~~W~~~~~M~~~R~-----~~g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 442 -CLNSVECYDPETNTWTLIAPMNTRRS-----GFGVAVL-NGK-IYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -ccceEEEEcCCCCceeecCCcccccc-----cceEEEE-CCE-EEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 222223232 2578988776655443 2223333 344 7766532 23899999999999994
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.08 E-value=1.6e-08 Score=97.03 Aligned_cols=184 Identities=9% Similarity=0.008 Sum_probs=118.3
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCc
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPY 190 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~ 190 (366)
.....+||.+++|..+|+++... . ......+ + +...+++-. . ....++.|+..+++|..++++|.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r-~-----~~~~v~~--~---~~iYviGG~--~--~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPR-L-----YASGVPA--N---NKLYVVGGL--P--NPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchh-h-----cceEEEE--C---CEEEEECCc--C--CCCceEEEECCCCeEEECCCCCC
Confidence 35778999999999999987654 1 1111111 1 222333321 1 12458999999999999998886
Q ss_pred eeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEE
Q 017755 191 YILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCD 269 (366)
Q Consensus 191 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~ 269 (366)
..... .++.++|++|-+++.... ...+.+||+.+++|+.+ ++|... .....++.+|+|+++... .+
T Consensus 352 ~r~~~--~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG~-----~e 418 (480)
T PHA02790 352 PRCNP--AVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGRN-----AE 418 (480)
T ss_pred CCccc--EEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECCc-----eE
Confidence 55432 378999999999886432 14688999999999987 444333 234667899999999752 23
Q ss_pred EEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------CeEEEEECCCCcEEEE
Q 017755 270 IWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 270 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~ydl~t~~~~~v 333 (366)
++-. ...+|+.+..+..+.. ...+++. +|. |++.... ..+..||+++++|+.-
T Consensus 419 ~ydp----~~~~W~~~~~m~~~r~-----~~~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 419 FYCE----SSNTWTLIDDPIYPRD-----NPELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EecC----CCCcEeEcCCCCCCcc-----ccEEEEE-CCE-EEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3222 2467997664432221 1122222 455 7766431 2489999999999754
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.07 E-value=6.1e-08 Score=88.47 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=131.3
Q ss_pred eEEEE-cCCCc-ceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEE-ecccceeEEEEEEcCCCcE----Ee
Q 017755 112 GMSVF-NPTTK-KFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQ-SYKVDYLEVIIYSLKADTW----RR 184 (366)
Q Consensus 112 ~~~V~-NP~t~-~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~~~~~~~~~~vyss~~~~W----~~ 184 (366)
.++++ +|..+ +|..+++++... .... ...++ + ++..+.- ........++.|+..++.| +.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r-------~~~~-~~~~~---~--~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~ 106 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEA-------AYGA-SVSVE---N--GIYYIGGSNSSERFSSVYRITLDESKEELICET 106 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccc-------cceE-EEEEC---C--EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeE
Confidence 45555 45433 788888776543 1111 11111 2 2333321 1222345788999999887 66
Q ss_pred cCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecC
Q 017755 185 TREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYH 263 (366)
Q Consensus 185 ~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~ 263 (366)
++++|..... ..+++++|++|.++...... ....+.+||+.+++|+.+ ++|.... .....+..+|+|+++....
T Consensus 107 ~~~lp~~~~~--~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 107 IGNLPFTFEN--GSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPR--VQPVCVKLQNELYVFGGGS 181 (323)
T ss_pred cCCCCcCccC--ceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCC--CcceEEEECCEEEEEcCCC
Confidence 7677655432 23678899999998753221 125799999999999988 4664331 2345578899999998864
Q ss_pred CCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC--------------------------
Q 017755 264 DEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS-------------------------- 317 (366)
Q Consensus 264 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-------------------------- 317 (366)
.....+++..+. ...+|+++........+........++..++. |++....
T Consensus 182 ~~~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (323)
T TIGR03548 182 NIAYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESL-LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKE 258 (323)
T ss_pred CccccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCE-EEEECCcCHHHHHHHHhhhhhccchhhhhhHHH
Confidence 332346677764 24679876543211111111111111222344 5554321
Q ss_pred ------------CeEEEEECCCCcEEEEE-EecCCCceeeeeeeecccccccCCcccee
Q 017755 318 ------------RCLHWYNLKDHKQDVIE-IRNENQSFWDAFICMGSLASIDAYTTVGV 363 (366)
Q Consensus 318 ------------~~l~~ydl~t~~~~~v~-~~~~~~~~~~~~~y~~sl~~~~~~~~~~~ 363 (366)
..+.+||+++++|+.+. +.............-..|.-+.+..+-|+
T Consensus 259 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~ 317 (323)
T TIGR03548 259 YFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGV 317 (323)
T ss_pred HhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCc
Confidence 24999999999999985 32110223345555556665555444444
No 12
>PLN02153 epithiospecifier protein
Probab=99.07 E-value=2.3e-08 Score=91.96 Aligned_cols=208 Identities=11% Similarity=0.087 Sum_probs=118.8
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEE-ecccceeEEEEEEcCCCcEEecCCC-
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQ-SYKVDYLEVIIYSLKADTWRRTREF- 188 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~~~~~~~~~~vyss~~~~W~~~~~~- 188 (366)
..++++||.+++|..+|+.......... ......++ + ++..+.- ........+++|++.+++|+.++.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~--~~~~~~~~-----~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~ 120 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCL--GVRMVAVG-----T--KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD 120 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccC--ceEEEEEC-----C--EEEEECCCCCCCccCcEEEEECCCCEEEEeccCC
Confidence 3689999999999998875432201000 11111111 2 2333321 1112234689999999999988765
Q ss_pred ----CceeecCCCCceEECCeEEEEEeeCCCCC-----CcceEEEEECCCceeEEECCCCCC-CCCeeeEEEEECCEEEE
Q 017755 189 ----PYYILDDRCNGVFIAGALHWLAARGSVRT-----GQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVLRGCLWI 258 (366)
Q Consensus 189 ----p~~~~~~~~~~v~~~G~lyw~~~~~~~~~-----~~~~i~~fD~~~e~~~~i~~P~~~-~~~~~~~l~~~~G~L~~ 258 (366)
|..... ...+..+|++|.++....... ....+.+||+++.+|+.++.+... .......++.++|++++
T Consensus 121 ~~~~p~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv 198 (341)
T PLN02153 121 EEGGPEARTF--HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV 198 (341)
T ss_pred CCCCCCCcee--eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE
Confidence 322222 236788999999987643210 113688999999999987543211 11123356778999999
Q ss_pred EEecCC---------CCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------------
Q 017755 259 NSYYHD---------EPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------------ 317 (366)
Q Consensus 259 v~~~~~---------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------------ 317 (366)
+..... ...-++++++. ...+|+++......+. .+..+...+. ++. ||+....
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~--~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~ 272 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPS--ARSVFAHAVV-GKY-IIIFGGEVWPDLKGHLGPG 272 (341)
T ss_pred EeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCC--CcceeeeEEE-CCE-EEEECcccCCccccccccc
Confidence 865321 00124666664 2467998764322111 1112222222 333 6655331
Q ss_pred ---CeEEEEECCCCcEEEEEE
Q 017755 318 ---RCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 318 ---~~l~~ydl~t~~~~~v~~ 335 (366)
..++.||+++++|+.+.-
T Consensus 273 ~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 273 TLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccccEEEEEcCccEEEeccC
Confidence 148999999999998853
No 13
>PLN02193 nitrile-specifier protein
Probab=98.99 E-value=7.8e-08 Score=92.06 Aligned_cols=206 Identities=10% Similarity=0.096 Sum_probs=121.7
Q ss_pred eEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEE-ecccceeEEEEEEcCCCcEEecCCC--
Q 017755 112 GMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQ-SYKVDYLEVIIYSLKADTWRRTREF-- 188 (366)
Q Consensus 112 ~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~~~~~~~~~~vyss~~~~W~~~~~~-- 188 (366)
.++++||.+++|..+|+....+... ........++ + ++..+.- ........+++|++.+++|+.++.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~----~~~~~~v~~~---~--~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLS----CLGVRMVSIG---S--TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCc----ccceEEEEEC---C--EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC
Confidence 5889999999999887643221000 0011111111 1 2222221 1112235689999999999998765
Q ss_pred -CceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCC-CCeeeEEEEECCEEEEEEecCCCC
Q 017755 189 -PYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMK-GGFCSQVGVLRGCLWINSYYHDEP 266 (366)
Q Consensus 189 -p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~-~~~~~~l~~~~G~L~~v~~~~~~~ 266 (366)
|..... ...+..++++|.++...... ....+.+||+.+.+|+.+..|.... ......++..+|+++++.......
T Consensus 265 ~P~~R~~--h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~ 341 (470)
T PLN02193 265 GPTPRSF--HSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE 341 (470)
T ss_pred CCCCccc--eEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc
Confidence 332222 23567899999998764321 1246889999999999886543221 112345667899999988754322
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---------------CeEEEEECCCCcEE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---------------RCLHWYNLKDHKQD 331 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------------~~l~~ydl~t~~~~ 331 (366)
.-++|+++.. ..+|+++......+.+ +.....++. ++. |++.... ..++.||++|++|+
T Consensus 342 ~~dv~~yD~~--t~~W~~~~~~g~~P~~--R~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 342 VDDVHYYDPV--QDKWTQVETFGVRPSE--RSVFASAAV-GKH-IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred cCceEEEECC--CCEEEEeccCCCCCCC--cceeEEEEE-CCE-EEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 3467888753 4679987654322221 112222222 344 5554321 13899999999999
Q ss_pred EEEE
Q 017755 332 VIEI 335 (366)
Q Consensus 332 ~v~~ 335 (366)
.+..
T Consensus 416 ~~~~ 419 (470)
T PLN02193 416 RLDK 419 (470)
T ss_pred Eccc
Confidence 9853
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.95 E-value=2.4e-07 Score=85.44 Aligned_cols=208 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred ceEEEEcC--CCcceEecCCCCC-CCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecc-----cceeEEEEEEcCCCcE
Q 017755 111 LGMSVFNP--TTKKFKLFPQFWS-DCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYK-----VDYLEVIIYSLKADTW 182 (366)
Q Consensus 111 ~~~~V~NP--~t~~~~~lP~~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-----~~~~~~~vyss~~~~W 182 (366)
..++++++ .+++|..+|+++. .+ . ......+ + ++-.|+.-..... .....++.|++.+++|
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R-~-----~~~~~~~--~---~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPR-N-----QAVAAAI--D---GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCc-c-----cceEEEE--C---CEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 46777774 7889999998863 32 1 1111111 1 2223332211100 0134689999999999
Q ss_pred EecCC-CCceeecCCCCce-EECCeEEEEEeeCCCC---------------------------------CCcceEEEEEC
Q 017755 183 RRTRE-FPYYILDDRCNGV-FIAGALHWLAARGSVR---------------------------------TGQNMILAFDL 227 (366)
Q Consensus 183 ~~~~~-~p~~~~~~~~~~v-~~~G~lyw~~~~~~~~---------------------------------~~~~~i~~fD~ 227 (366)
+.++. +|..... ..++ .++|+||.++...... .....+.+||+
T Consensus 98 ~~~~~~~p~~~~~--~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp 175 (346)
T TIGR03547 98 QKLDTRSPVGLLG--ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP 175 (346)
T ss_pred ecCCCCCCCcccc--eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC
Confidence 99873 3332211 1134 6899999998754210 00147999999
Q ss_pred CCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCC--CCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEE
Q 017755 228 KSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHD--EPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFA 303 (366)
Q Consensus 228 ~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~ 303 (366)
.+++|+.+ ++|.... ....++..+|+|+++..... ....++|..+-.....+|+.+..++........ .....+
T Consensus 176 ~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 176 STNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred CCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 99999998 5664221 24467788999999988532 113456666532224679877655432210000 011112
Q ss_pred EEeCCCeEEEEEcC-----------------------CeEEEEECCCCcEEEEE
Q 017755 304 FSKDGDKALIYQHS-----------------------RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 304 ~~~~g~~i~l~~~~-----------------------~~l~~ydl~t~~~~~v~ 334 (366)
+.-+|. |++.... ..+-+||+++++|+.+.
T Consensus 254 ~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 254 GISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 223455 6665421 13679999999999883
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.88 E-value=2.9e-10 Score=71.86 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHHccCCccceeeeeecccccccccCChhHHH
Q 017755 1 MSSLPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQDFVK 42 (366)
Q Consensus 1 ~~~LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~F~~ 42 (366)
|+.||+|++.+||+.||++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 678999999999999999999999999999999998876543
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.83 E-value=1.6e-07 Score=91.75 Aligned_cols=194 Identities=11% Similarity=0.091 Sum_probs=118.1
Q ss_pred eEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEe--cccceeEEEEEEcCCCcEEecCCCC
Q 017755 112 GMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQS--YKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 112 ~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~--~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
.+.-+|+.+++|..++..+... .......+ + +++.+... .......+..|+..+++|..++++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-------CFGSVVLN-----N--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI 330 (534)
T ss_pred eeeecchhhhhcccccCccccc-------cceEEEEC-----C--EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC
Confidence 3445788899998887655322 11111111 1 22222211 1112236889999999999998877
Q ss_pred ceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCC--
Q 017755 190 YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEP-- 266 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~-- 266 (366)
...... ..+.++|.+|-+++.... .....+..||+.+.+|+.+ ++|... .....+..+|+++++.+.....
T Consensus 331 ~~R~~~--~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r---~~~~~~~~~~~iYv~GG~~~~~~~ 404 (534)
T PHA03098 331 YPRKNP--GVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR---YNPCVVNVNNLIYVIGGISKNDEL 404 (534)
T ss_pred cccccc--eEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC---ccceEEEECCEEEEECCcCCCCcc
Confidence 544332 367899999999986532 1224788999999999987 566544 2345677899999998843211
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---------CeEEEEECCCCcEEEEE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---------RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~ydl~t~~~~~v~ 334 (366)
.-.++..+. ...+|..+..++... .... ++..++. |++.... ..+..||+++++|+.+.
T Consensus 405 ~~~v~~yd~--~t~~W~~~~~~p~~r-----~~~~-~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 405 LKTVECFSL--NTNKWSKGSPLPISH-----YGGC-AIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred cceEEEEeC--CCCeeeecCCCCccc-----cCce-EEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 124555554 246798765333221 1111 2222444 6665421 13899999999999984
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.82 E-value=9.2e-07 Score=82.41 Aligned_cols=244 Identities=13% Similarity=0.062 Sum_probs=131.6
Q ss_pred ecccceEEee-e-cCceEEEEcCC--CcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEe-cc----cc
Q 017755 98 GCCHGLLAMF-N-RRLGMSVFNPT--TKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQS-YK----VD 168 (366)
Q Consensus 98 ~s~nGLl~~~-~-~~~~~~V~NP~--t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~----~~ 168 (366)
+..++-|.+. . ....++++++. +++|..+|+++... +. ......++ +...|+.-... .. ..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~-r~----~~~~v~~~-----~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGP-RE----QAVAAFID-----GKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCC-cc----cceEEEEC-----CEEEEEcCCCCCCCCCceeE
Confidence 3345554332 1 23456777765 57899998775322 11 11111111 23333332111 00 11
Q ss_pred eeEEEEEEcCCCcEEecCCC-CceeecCCCCceE-ECCeEEEEEeeCCCC------------------------------
Q 017755 169 YLEVIIYSLKADTWRRTREF-PYYILDDRCNGVF-IAGALHWLAARGSVR------------------------------ 216 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~-p~~~~~~~~~~v~-~~G~lyw~~~~~~~~------------------------------ 216 (366)
...+++|+..+++|+.++.+ |.... ...++. .+|+||.++......
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~--~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~ 182 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLA--GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP 182 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCccc--ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence 24689999999999998742 32221 112344 799999998754210
Q ss_pred ---CCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCC--CCeEEEEEEeecCCCCCeeEEEEecC
Q 017755 217 ---TGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHD--EPRCDIWVMKEYGSQQSWSKLCSFSK 290 (366)
Q Consensus 217 ---~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~ 290 (366)
.....+.+||+.+++|+.+ ++|.... ....++..+++|+++..... ....++|..+-.....+|.++..++.
T Consensus 183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred hhcCcCceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 0124699999999999987 5664221 23456778999999987422 22456776653223578998775543
Q ss_pred CCCC--CcceeEEEEEEeCCCeEEEEEcCC-----------------------eEEEEECCCCcEEEEE-EecCCCceee
Q 017755 291 MLHE--TCYYTEAFAFSKDGDKALIYQHSR-----------------------CLHWYNLKDHKQDVIE-IRNENQSFWD 344 (366)
Q Consensus 291 ~~~~--~~~~~~~~~~~~~g~~i~l~~~~~-----------------------~l~~ydl~t~~~~~v~-~~~~~~~~~~ 344 (366)
.... ........+..-+|. |++..... .+-+||+++++|+.+. ++.. .....
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~-r~~~~ 338 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG-LAYGV 338 (376)
T ss_pred CCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC-ccceE
Confidence 2210 000112222233444 66654210 2457999999999884 2221 22233
Q ss_pred eeeeecccccccC
Q 017755 345 AFICMGSLASIDA 357 (366)
Q Consensus 345 ~~~y~~sl~~~~~ 357 (366)
+...-..|+-+.+
T Consensus 339 av~~~~~iyv~GG 351 (376)
T PRK14131 339 SVSWNNGVLLIGG 351 (376)
T ss_pred EEEeCCEEEEEcC
Confidence 4444444444443
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=98.73 E-value=6.9e-07 Score=85.82 Aligned_cols=166 Identities=9% Similarity=0.025 Sum_probs=108.0
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCS 247 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~ 247 (366)
...++.|++.+++|..+++++...... ..+.++|.+|-+++.... ..+..||+.+++|+.+ ++|... ...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~--~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r---~~~ 356 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLYA--SGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR---CNP 356 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhcc--eEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC---ccc
Confidence 356889999999999999887654432 367899999999986431 4688999999999987 666544 355
Q ss_pred EEEEECCEEEEEEecCCC-CeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 248 QVGVLRGCLWINSYYHDE-PRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 248 ~l~~~~G~L~~v~~~~~~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
..++++|+||++.+.... ..++.+ +. ...+|+.+..++.+.. .. .++.-+|. |++... ...+||++
T Consensus 357 ~~~~~~g~IYviGG~~~~~~~ve~y--dp--~~~~W~~~~~m~~~r~-----~~-~~~~~~~~-IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 357 AVASINNVIYVIGGHSETDTTTEYL--LP--NHDQWQFGPSTYYPHY-----KS-CALVFGRR-LFLVGR--NAEFYCES 423 (480)
T ss_pred EEEEECCEEEEecCcCCCCccEEEE--eC--CCCEEEeCCCCCCccc-----cc-eEEEECCE-EEEECC--ceEEecCC
Confidence 778899999999885432 234444 22 2467987543332221 21 22222444 777652 37789999
Q ss_pred CCcEEEEE-EecCCCceeeeeeeecccccccC
Q 017755 327 DHKQDVIE-IRNENQSFWDAFICMGSLASIDA 357 (366)
Q Consensus 327 t~~~~~v~-~~~~~~~~~~~~~y~~sl~~~~~ 357 (366)
+++|+.+. +... .....+..+-..|.-+.+
T Consensus 424 ~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 424 SNTWTLIDDPIYP-RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCcEeEcCCCCCC-ccccEEEEECCEEEEECC
Confidence 99999884 3221 233444444444444443
No 19
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.68 E-value=1.5e-09 Score=69.03 Aligned_cols=43 Identities=42% Similarity=0.521 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHccCCccceeeeeecccccccccCChhHHHHH
Q 017755 2 SSLPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQDFVKLH 44 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~F~~~~ 44 (366)
+.||+|++.+||.+||++++.+++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999999886654
No 20
>PLN02153 epithiospecifier protein
Probab=98.68 E-value=3.8e-06 Score=77.31 Aligned_cols=171 Identities=11% Similarity=0.102 Sum_probs=99.7
Q ss_pred ceEEEEcCCCcceEecCCCCCC--CccCCCCCCeeEeEEeecCCCCCeeEEEEEEecc-----cceeEEEEEEcCCCcEE
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSD--CYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYK-----VDYLEVIIYSLKADTWR 183 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~--~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-----~~~~~~~vyss~~~~W~ 183 (366)
..++++||.|++|..++++... ...+ .... ...+ .+...|+.-..... .....+++|+..+++|+
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R----~~~~-~~~~---~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEAR----TFHS-MASD---ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCc----eeeE-EEEE---CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 4688999999999998765210 0000 1111 1111 12222332221110 11236899999999999
Q ss_pred ecCCCCcee-ecCCCCceEECCeEEEEEeeCCC-------CCCcceEEEEECCCceeEEEC----CCCCCCCCeeeEEEE
Q 017755 184 RTREFPYYI-LDDRCNGVFIAGALHWLAARGSV-------RTGQNMILAFDLKSEKFYEVQ----QPHGMKGGFCSQVGV 251 (366)
Q Consensus 184 ~~~~~p~~~-~~~~~~~v~~~G~lyw~~~~~~~-------~~~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~~l~~ 251 (366)
.++.+.... .-.....+.++|++|.+...... ......+.+||+.+.+|+.+. +|... .....+.
T Consensus 173 ~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r---~~~~~~~ 249 (341)
T PLN02153 173 QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR---SVFAHAV 249 (341)
T ss_pred eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc---ceeeeEE
Confidence 987543211 11112357889999998754210 011246999999999999874 34433 2345677
Q ss_pred ECCEEEEEEecCC--------CC--eEEEEEEeecCCCCCeeEEEEecCCCCC
Q 017755 252 LRGCLWINSYYHD--------EP--RCDIWVMKEYGSQQSWSKLCSFSKMLHE 294 (366)
Q Consensus 252 ~~G~L~~v~~~~~--------~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 294 (366)
++++|+++..... .. .-++|.++. ...+|+++.......++
T Consensus 250 ~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~~~~~p 300 (341)
T PLN02153 250 VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECGEPAMP 300 (341)
T ss_pred ECCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCCCCCCCC
Confidence 8899999988521 11 127899986 35789987654444443
No 21
>PLN02193 nitrile-specifier protein
Probab=98.61 E-value=6.9e-06 Score=78.79 Aligned_cols=155 Identities=12% Similarity=0.142 Sum_probs=95.0
Q ss_pred eEEEEEEcCCCcEEecCCC---CceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CC---CCCCC
Q 017755 170 LEVIIYSLKADTWRRTREF---PYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQ---PHGMK 242 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~~~---p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~---P~~~~ 242 (366)
..+++|+..+++|..++.. |.. .......+.++++||-++...... ....+.+||+.+++|+.+ ++ |...
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R- 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR- 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc-
Confidence 3589999999999987532 211 111223578899999998764321 124688999999999987 33 3222
Q ss_pred CCeeeEEEEECCEEEEEEecCCCC-eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc-C---
Q 017755 243 GGFCSQVGVLRGCLWINSYYHDEP-RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH-S--- 317 (366)
Q Consensus 243 ~~~~~~l~~~~G~L~~v~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~--- 317 (366)
.....+..+++|+++....... .-+++..+- ...+|..+..... .+..+....+++. +++ |++... .
T Consensus 270 --~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~~~--~~~~R~~~~~~~~-~gk-iyviGG~~g~~ 341 (470)
T PLN02193 270 --SFHSMAADEENVYVFGGVSATARLKTLDSYNI--VDKKWFHCSTPGD--SFSIRGGAGLEVV-QGK-VWVVYGFNGCE 341 (470)
T ss_pred --cceEEEEECCEEEEECCCCCCCCcceEEEEEC--CCCEEEeCCCCCC--CCCCCCCcEEEEE-CCc-EEEEECCCCCc
Confidence 2345667899999998854321 235666664 2467986542111 1111112222222 455 554432 1
Q ss_pred -CeEEEEECCCCcEEEEEE
Q 017755 318 -RCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 318 -~~l~~ydl~t~~~~~v~~ 335 (366)
..+..||+++++|+.+..
T Consensus 342 ~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred cCceEEEECCCCEEEEecc
Confidence 349999999999999854
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.57 E-value=5e-09 Score=64.11 Aligned_cols=39 Identities=51% Similarity=0.772 Sum_probs=36.5
Q ss_pred CcHHHHHHHHccCCccceeeeeecccccccccCChhHHH
Q 017755 4 LPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQDFVK 42 (366)
Q Consensus 4 LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~F~~ 42 (366)
||+|++.+||.+||++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887743
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.53 E-value=0.00016 Score=67.37 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=90.0
Q ss_pred eEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCC--CcceEEEEECCCceeEEE-CCCCCCCC---
Q 017755 170 LEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRT--GQNMILAFDLKSEKFYEV-QQPHGMKG--- 243 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~--~~~~i~~fD~~~e~~~~i-~~P~~~~~--- 243 (366)
..+++|+..+++|+.+..+|..... ....+.++|+||.++....... .......||+++.+|+.+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~-~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTA-GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCC-cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 4689999999999999877742221 1235678999999997532211 113456678899999987 56654311
Q ss_pred -C-eeeEEEEECCEEEEEEecCCCC--------e-------EEEEEEeecC-CCCCeeEEEEecCCCCCCcceeEEEEEE
Q 017755 244 -G-FCSQVGVLRGCLWINSYYHDEP--------R-------CDIWVMKEYG-SQQSWSKLCSFSKMLHETCYYTEAFAFS 305 (366)
Q Consensus 244 -~-~~~~l~~~~G~L~~v~~~~~~~--------~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 305 (366)
. .....++++|+|+++....... . -.+|..+-++ ....|++...++... .... ++.
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r-----~~~~-av~ 341 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL-----AYGV-SVS 341 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc-----cceE-EEE
Confidence 1 1122567899999988743210 0 0123322221 136798765443222 1222 233
Q ss_pred eCCCeEEEEEcC-------CeEEEEECCCCcEEE
Q 017755 306 KDGDKALIYQHS-------RCLHWYNLKDHKQDV 332 (366)
Q Consensus 306 ~~g~~i~l~~~~-------~~l~~ydl~t~~~~~ 332 (366)
-+++ |++.... ..+..|+++++++..
T Consensus 342 ~~~~-iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 342 WNNG-VLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eCCE-EEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 3455 6665432 148888888877654
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.39 E-value=5.7e-05 Score=69.65 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEE--ECCCceeEEE-CCCCCCC---C
Q 017755 170 LEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAF--DLKSEKFYEV-QQPHGMK---G 243 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~f--D~~~e~~~~i-~~P~~~~---~ 243 (366)
..+++|++.+++|+.++.+|..... ....+.++|+||.++...........+..| |+.+.+|+.+ ++|.... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTA-GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCC-CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 4699999999999999887743221 123568899999999764322111234444 5577799887 5554321 1
Q ss_pred C-eeeEEEEECCEEEEEEec
Q 017755 244 G-FCSQVGVLRGCLWINSYY 262 (366)
Q Consensus 244 ~-~~~~l~~~~G~L~~v~~~ 262 (366)
+ .....++++|+|+++...
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred cccEEeeeEECCEEEEeecC
Confidence 1 123467789999999875
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.20 E-value=9e-05 Score=67.64 Aligned_cols=140 Identities=12% Similarity=0.210 Sum_probs=89.4
Q ss_pred cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCcee----EEE-CCCCCCCCCeeeEEEEECCE
Q 017755 181 TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKF----YEV-QQPHGMKGGFCSQVGVLRGC 255 (366)
Q Consensus 181 ~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~----~~i-~~P~~~~~~~~~~l~~~~G~ 255 (366)
+|..+..+|...... .++.+++.+|.++...... ....+..||+.+.+| +.+ ++|... .....++.+|+
T Consensus 52 ~W~~~~~lp~~r~~~--~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~---~~~~~~~~~~~ 125 (323)
T TIGR03548 52 KWVKDGQLPYEAAYG--ASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTF---ENGSACYKDGT 125 (323)
T ss_pred eEEEcccCCccccce--EEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCc---cCceEEEECCE
Confidence 799998887655332 3678899999998764321 224788999999988 333 455443 24466778999
Q ss_pred EEEEEecCCC-CeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC-----CeEEEEECCCCc
Q 017755 256 LWINSYYHDE-PRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS-----RCLHWYNLKDHK 329 (366)
Q Consensus 256 L~~v~~~~~~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~l~~ydl~t~~ 329 (366)
|+++...... ..-++|.++-. ..+|+++..++.... ... .++.-++. |++.... ..+..||+++++
T Consensus 126 iYv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~r----~~~-~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 126 LYVGGGNRNGKPSNKSYLFNLE--TQEWFELPDFPGEPR----VQP-VCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEeCcCCCccCceEEEEcCC--CCCeeECCCCCCCCC----Ccc-eEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence 9999885321 12367777752 467987654432111 122 22223454 6665422 137899999999
Q ss_pred EEEEE
Q 017755 330 QDVIE 334 (366)
Q Consensus 330 ~~~v~ 334 (366)
|+.+.
T Consensus 198 W~~~~ 202 (323)
T TIGR03548 198 WQKVA 202 (323)
T ss_pred eEECC
Confidence 99884
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.84 E-value=0.0011 Score=56.55 Aligned_cols=226 Identities=13% Similarity=0.173 Sum_probs=123.5
Q ss_pred ecccceEEeeecCceEEEEcCCCcceEecCCCC--CCCccC-CCC---CCeeEeEEeecCCCCCeeEEEE--EEecccce
Q 017755 98 GCCHGLLAMFNRRLGMSVFNPTTKKFKLFPQFW--SDCYTD-YMT---NNFHFDGFGYDASTDDYKLVRI--IQSYKVDY 169 (366)
Q Consensus 98 ~s~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~--~~~~~~-~~~---~~~~~~~~g~d~~~~~ykVv~~--~~~~~~~~ 169 (366)
+-|.|-.-=...+-.+.|.|..+-+|..+|+-- ... +. +.. ..+......|+ + |+..- ..+..+..
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i-~~~yp~VPyqRYGHtvV~y~---d--~~yvWGGRND~egaC 104 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATI-ESPYPAVPYQRYGHTVVEYQ---D--KAYVWGGRNDDEGAC 104 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccc-cCCCCccchhhcCceEEEEc---c--eEEEEcCccCccccc
Confidence 345555433334667899999999999999832 111 00 000 00111111111 0 11111 12223344
Q ss_pred eEEEEEEcCCCcEEecCC---CCceeecCCCCceEECCeEEEEEeeCCC-CCCcceEEEEECCCceeEEECC---CCCCC
Q 017755 170 LEVIIYSLKADTWRRTRE---FPYYILDDRCNGVFIAGALHWLAARGSV-RTGQNMILAFDLKSEKFYEVQQ---PHGMK 242 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~~---~p~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~~i~~fD~~~e~~~~i~~---P~~~~ 242 (366)
....-|+.+++.|+..+- .|...-. .++++.+..+|-.+...++ ......+-+||+.|++|+.+.. |+.-.
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDG--HsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDG--HSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCC--ceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 567889999999997652 3332222 2478889999998876432 1112368999999999999843 33222
Q ss_pred CCeeeEEEEECCEEEEEEecCCCC----------eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEE
Q 017755 243 GGFCSQVGVLRGCLWINSYYHDEP----------RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKAL 312 (366)
Q Consensus 243 ~~~~~~l~~~~G~L~~v~~~~~~~----------~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~ 312 (366)
+ ...-.+++|..++.....+.. .-.|=.++- ..+-|.+-. .....++.+ .+-..+.-+|++.+
T Consensus 183 D--FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p--~~~~~P~GR-RSHS~fvYng~~Y~ 255 (392)
T KOG4693|consen 183 D--FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTP--ENTMKPGGR-RSHSTFVYNGKMYM 255 (392)
T ss_pred h--hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCC--CCCcCCCcc-cccceEEEcceEEE
Confidence 1 223445568888877743210 113333433 135687653 222333322 22223334676333
Q ss_pred EEEc-------CCeEEEEECCCCcEEEEEEecC
Q 017755 313 IYQH-------SRCLHWYNLKDHKQDVIEIRNE 338 (366)
Q Consensus 313 l~~~-------~~~l~~ydl~t~~~~~v~~~~~ 338 (366)
+... -..++.+|++|..|..|+..|.
T Consensus 256 FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 256 FGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred ecccchhhhhhhcceeecccccchheeeeccCC
Confidence 3321 1249999999999999998876
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.83 E-value=0.00097 Score=60.20 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=122.9
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecc------cceeEEEEEEcCCCcEEe
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYK------VDYLEVIIYSLKADTWRR 184 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~------~~~~~~~vyss~~~~W~~ 184 (366)
+.+|++|--+.+|+.+-.+..+. ++ +.......|+. +-.+.-..... .......+|++.+..|..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~-pR------sshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPP-PR------SSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeEEeccccceeEeccCCCcC-CC------ccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 47899999999998764333322 11 11122223322 11111111110 122356788999999998
Q ss_pred cC--CCCceeecCCCCceEECCeEEEEEeeCCCC---CCcceEEEEECCCceeEEECCCCCC-CCCeeeEEEEE-CCEEE
Q 017755 185 TR--EFPYYILDDRCNGVFIAGALHWLAARGSVR---TGQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVL-RGCLW 257 (366)
Q Consensus 185 ~~--~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~~i~~fD~~~e~~~~i~~P~~~-~~~~~~~l~~~-~G~L~ 257 (366)
+. +-|......+ .|.....|.-+++..... ..-.-+-+||+.+-+|+.+..+-.. ....-..+.+. +|.++
T Consensus 169 l~~~g~PS~RSGHR--MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 169 LEFGGGPSPRSGHR--MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV 246 (521)
T ss_pred eccCCCCCCCccce--eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence 86 3344444433 344444444433322110 0113689999999999999654321 11123455556 67776
Q ss_pred EEEecC----------CCCeEEEEEEeec---CCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC-------
Q 017755 258 INSYYH----------DEPRCDIWVMKEY---GSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------- 317 (366)
Q Consensus 258 ~v~~~~----------~~~~l~iW~l~~~---~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------- 317 (366)
+-.... +..+-+.|.|+.. +++-.|+++..+.+.+-+.. .-.++++++++.++|....
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs--gfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS--GFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC--ceeEEEecCCceEEecceecccccch
Confidence 655531 2335699999743 22457888887777766531 2335667777777775421
Q ss_pred -------CeEEEEECCCCcEEEEEEecC
Q 017755 318 -------RCLHWYNLKDHKQDVIEIRNE 338 (366)
Q Consensus 318 -------~~l~~ydl~t~~~~~v~~~~~ 338 (366)
..|+.||+..++|..-++++.
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred hhhhhhhhhhhheecccchhhHhhhccC
Confidence 139999999999988877653
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.70 E-value=0.0011 Score=56.55 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=97.7
Q ss_pred ceEEEEcCCCcceEecCCCCCCC-ccCCCCCCeeEeEEeecCCCCCeeEEEEEEe-cccceeEEEEEEcCCCcEEecCC-
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDC-YTDYMTNNFHFDGFGYDASTDDYKLVRIIQS-YKVDYLEVIIYSLKADTWRRTRE- 187 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~-~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~~~~~~~~vyss~~~~W~~~~~- 187 (366)
+.++-++|-|.+|.+---....+ .++ ....+.+| +.-.|+.-..+ .+.-...+++++..|-.|+.+..
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRD----GHsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARD----GHSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred ceeeeeccccccccccceeeecCCccC----CceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 35788899999997632111110 011 22344444 22233332221 12234567788888999999873
Q ss_pred -CCceeecCCCCceEECCeEEEEEeeCCCC--------CCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEE
Q 017755 188 -FPYYILDDRCNGVFIAGALHWLAARGSVR--------TGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLW 257 (366)
Q Consensus 188 -~p~~~~~~~~~~v~~~G~lyw~~~~~~~~--------~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~ 257 (366)
.|...... ..++.++|.+|-.+..++.. .....|++||+.|+.|..- +.|.-..........+++|+++
T Consensus 176 g~PprwRDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y 254 (392)
T KOG4693|consen 176 GDPPRWRDF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMY 254 (392)
T ss_pred CCCchhhhh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEE
Confidence 34332222 23678889999998765421 1335899999999999764 1111111113557788999999
Q ss_pred EEEecCCC---CeEEEEEEeecCCCCCeeEEEE
Q 017755 258 INSYYHDE---PRCDIWVMKEYGSQQSWSKLCS 287 (366)
Q Consensus 258 ~v~~~~~~---~~l~iW~l~~~~~~~~W~~~~~ 287 (366)
+....... .--++|..+. ....|.+...
T Consensus 255 ~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~ 285 (392)
T KOG4693|consen 255 MFGGYNGTLNVHFNDLYCFDP--KTSMWSVISV 285 (392)
T ss_pred Eecccchhhhhhhcceeeccc--ccchheeeec
Confidence 99886541 1237888886 3467987653
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.34 E-value=0.016 Score=55.88 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=103.5
Q ss_pred EEEEEEcCCCcEEecCC---CCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCC-CCCCee
Q 017755 171 EVIIYSLKADTWRRTRE---FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHG-MKGGFC 246 (366)
Q Consensus 171 ~~~vyss~~~~W~~~~~---~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~-~~~~~~ 246 (366)
.+.+++.++..|..... .|..... ...+.++..||.++...........+-+||+.|.+|..+..-.. ......
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g--~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYG--HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccc--eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence 58888888888976542 3322222 23678889999999877422223589999999999998733222 111134
Q ss_pred eEEEEECCEEEEEEecCCCC--eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------C
Q 017755 247 SQVGVLRGCLWINSYYHDEP--RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------R 318 (366)
Q Consensus 247 ~~l~~~~G~L~~v~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~ 318 (366)
..++..+.+|++........ .-++|+++-. ...|.++......+.+. ..+.+++.++.- +++...+ .
T Consensus 167 Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR--~gH~~~~~~~~~-~v~gG~~~~~~~l~ 241 (482)
T KOG0379|consen 167 HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPR--YGHAMVVVGNKL-LVFGGGDDGDVYLN 241 (482)
T ss_pred ceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCC--CCceEEEECCeE-EEEeccccCCceec
Confidence 46667778888888865432 5689999863 35699988777666543 345555554332 3322222 1
Q ss_pred eEEEEECCCCcEEEEEEec
Q 017755 319 CLHWYNLKDHKQDVIEIRN 337 (366)
Q Consensus 319 ~l~~ydl~t~~~~~v~~~~ 337 (366)
.++.+|+.+.+|+.+...+
T Consensus 242 D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 242 DVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEeeecccceeeeccccC
Confidence 3999999999998665444
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=6.1e-05 Score=65.34 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHccCCccceeeeeecccccccccCChh
Q 017755 2 SSLPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQD 39 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~ 39 (366)
+.|||||++.||+.||.|+|+++..|||+|+++-++..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999988654
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.12 E-value=0.046 Score=52.72 Aligned_cols=182 Identities=14% Similarity=0.061 Sum_probs=106.5
Q ss_pred EEecccceEEeeecC------ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEE-Eecc-c
Q 017755 96 VIGCCHGLLAMFNRR------LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRII-QSYK-V 167 (366)
Q Consensus 96 ~~~s~nGLl~~~~~~------~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~-~ 167 (366)
+..-.+.|+++.... ..+..+|+.|++|..+.+....+ +.-. .......| + |++.+. .... +
T Consensus 118 ~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P-~~r~--~Hs~~~~g------~-~l~vfGG~~~~~~ 187 (482)
T KOG0379|consen 118 LSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP-PPRA--GHSATVVG------T-KLVVFGGIGGTGD 187 (482)
T ss_pred EEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC-CCcc--cceEEEEC------C-EEEEECCccCccc
Confidence 333335565555432 37999999999999887655422 1100 11222222 2 333332 2221 2
Q ss_pred ceeEEEEEEcCCCcEEecCCCCceeecCC-CCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEEC-CCCCCCCCe
Q 017755 168 DYLEVIIYSLKADTWRRTREFPYYILDDR-CNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQ-QPHGMKGGF 245 (366)
Q Consensus 168 ~~~~~~vyss~~~~W~~~~~~p~~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~ 245 (366)
....+.||+..+.+|..+......+.... ...+.++++++.+.+...+.....-+..||+.+.+|..+. .........
T Consensus 188 ~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 188 SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc
Confidence 46789999999999999874322221111 1245666676666665533334468999999999998441 111111113
Q ss_pred eeEEEEECCEEEEEEecCCC---CeEEEEEEeecCCCCCeeEEEEec
Q 017755 246 CSQVGVLRGCLWINSYYHDE---PRCDIWVMKEYGSQQSWSKLCSFS 289 (366)
Q Consensus 246 ~~~l~~~~G~L~~v~~~~~~---~~l~iW~l~~~~~~~~W~~~~~i~ 289 (366)
...++..+..+.++...... .--++|.++.. ...|.++....
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred eeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 44555667788888876552 24578888864 57899887666
No 32
>PF13964 Kelch_6: Kelch motif
Probab=96.51 E-value=0.0068 Score=38.33 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=33.6
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCC
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPH 239 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~ 239 (366)
..|+++|+||.+++..........+..||+++++|+.+ ++|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 46899999999998876333346899999999999998 5553
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.35 E-value=0.00068 Score=59.16 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHccCC-----ccceeeeeecccccccccCChhHHHHH
Q 017755 1 MSSLPLDLISDILSRLP-----VKPLLRFRCVSKCFCGLIDSQDFVKLH 44 (366)
Q Consensus 1 ~~~LP~Dll~~Il~rLP-----~~~l~r~~~VcK~W~~li~~~~F~~~~ 44 (366)
|+.||||+|.+||.++= +.+|.++.+|||.|+...++|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46799999999998864 489999999999999999999987654
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.32 E-value=0.2 Score=43.63 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCC---------CeeeEEEEECCEEEEEEecCCCC
Q 017755 197 CNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKG---------GFCSQVGVLRGCLWINSYYHDEP 266 (366)
Q Consensus 197 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~---------~~~~~l~~~~G~L~~v~~~~~~~ 266 (366)
++.|+.||.+|+-.... ..|+.||+.++.-. ...+|..... .....+++.+.-|.++......+
T Consensus 72 tG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred CCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 45789999999988754 48999999999998 7788877632 13578999999999988865532
Q ss_pred -eEEEEEEeec--CCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc-C---C-eEEEEECCCCcEEEEEEe
Q 017755 267 -RCDIWVMKEY--GSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH-S---R-CLHWYNLKDHKQDVIEIR 336 (366)
Q Consensus 267 -~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~---~-~l~~ydl~t~~~~~v~~~ 336 (366)
.+.|-.|+.. ...++|..- +..... .. +|.-.|- ++.... + . -.++||+.+++-+.+.+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T~--~~k~~~-----~n--aFmvCGv-LY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTS--YPKRSA-----GN--AFMVCGV-LYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CcEEEEeeCcccCceEEEEEec--cCchhh-----cc--eeeEeeE-EEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 6888888753 224556531 122221 11 1111222 333221 1 2 278999999998888664
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=96.26 E-value=0.27 Score=42.65 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=78.1
Q ss_pred CCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCC-CC--------CeeeEEEEECCEEEEEEecCC-C
Q 017755 197 CNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGM-KG--------GFCSQVGVLRGCLWINSYYHD-E 265 (366)
Q Consensus 197 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~-~~--------~~~~~l~~~~G~L~~v~~~~~-~ 265 (366)
+..|+.||.+|+-.... ..|+.||+.+++.... .+|... ++ .....|++.+.-|.++-.... .
T Consensus 77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 45799999999966554 4799999999999644 677543 11 135799999999999877543 3
Q ss_pred CeEEEEEEeec--CCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcC-CeEEEEECCCCcEEEEEE
Q 017755 266 PRCDIWVMKEY--GSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHS-RCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 266 ~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~-~~l~~ydl~t~~~~~v~~ 335 (366)
+.+.|-.|+.. +..++|..- +......... .|.++.+..... ..+ .-.++||..|++-+.+.+
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~--~~k~sa~naFmvCGvLY~~~s~~-----~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITT--YNKRSASNAFMICGILYVTRSLG-----SKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcC--CCcccccccEEEeeEEEEEccCC-----CCCcEEEEEEECCCCccceeee
Confidence 47888888863 224566542 2222211100 222222221100 011 228899999998877755
No 36
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.23 E-value=0.11 Score=47.38 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=91.0
Q ss_pred EEEEEEcCCCcEEecCC--CCceeecCCCCceEE-CCeEEEEEeeCCCCC----Cc-ceEEEEECCCceeEEECCCCCCC
Q 017755 171 EVIIYSLKADTWRRTRE--FPYYILDDRCNGVFI-AGALHWLAARGSVRT----GQ-NMILAFDLKSEKFYEVQQPHGMK 242 (366)
Q Consensus 171 ~~~vyss~~~~W~~~~~--~p~~~~~~~~~~v~~-~G~lyw~~~~~~~~~----~~-~~i~~fD~~~e~~~~i~~P~~~~ 242 (366)
....|+.+.++|+.+.. .|+.....+ +|.+ .|.+|..+++-..+. .. .-+-.||+.+.+|..+.++....
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq--~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQ--AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccce--eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 46788889999999864 233333332 4444 476666665432211 11 25789999999999998877663
Q ss_pred CCeeeEEEEECCEEEEEEecCCCCe-----EEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC
Q 017755 243 GGFCSQVGVLRGCLWINSYYHDEPR-----CDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS 317 (366)
Q Consensus 243 ~~~~~~l~~~~G~L~~v~~~~~~~~-----l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~ 317 (366)
...-..++....+|.+...-+..+. =++|..+- ....|+++.. + ...+..+-.+-+.+.++|+++++....
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep-s-ga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP-S-GAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC-C-CCCCCCCCcceEEecCCCcEEEEcchh
Confidence 3234467777888888776443211 26777764 2467998775 2 223322212225566778755543321
Q ss_pred --------------CeEEEEECCC
Q 017755 318 --------------RCLHWYNLKD 327 (366)
Q Consensus 318 --------------~~l~~ydl~t 327 (366)
..++..++++
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCc
Confidence 1388899988
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.15 E-value=0.014 Score=36.18 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=33.8
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCC
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQP 238 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 238 (366)
..+.++|.+|-+++..........+.+||+.+.+|+.+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 46899999999998876444557999999999999987 544
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.94 E-value=0.0014 Score=57.72 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=38.0
Q ss_pred CCCCc----HHHHHHHHccCCccceeeeeecccccccccCChhHHH
Q 017755 1 MSSLP----LDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQDFVK 42 (366)
Q Consensus 1 ~~~LP----~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~F~~ 42 (366)
|..|| +++.+.||+.|...+|..|+.|||+|+++++++.--+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 35689 9999999999999999999999999999999986544
No 39
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.54 Score=43.51 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=73.0
Q ss_pred ceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeec
Q 017755 199 GVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEY 276 (366)
Q Consensus 199 ~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~ 276 (366)
..+-+|. .-+..... .++.+||+.+.+.+.+..|.+.+......+.+. +|...++.+..+ .|.+-..+-
T Consensus 264 ~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G--~I~lLhakT- 334 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG--HIHLLHAKT- 334 (514)
T ss_pred eecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc--eEEeehhhh-
Confidence 3444776 44444443 489999999999999999988853222222222 244333333333 455555542
Q ss_pred CCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 277 GSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 277 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
++|..-..|+- ...-+.|..+|+.|++....+.++.+|++.+.....
T Consensus 335 ---~eli~s~KieG-------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 335 ---KELITSFKIEG-------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred ---hhhhheeeecc-------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 45654444432 245577778898788877777899999999976555
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.67 E-value=1.2 Score=38.15 Aligned_cols=191 Identities=15% Similarity=0.057 Sum_probs=94.7
Q ss_pred ccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCC
Q 017755 100 CHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 100 ~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~ 179 (366)
.+|.+...+....++.+|+.|++...--..+... .... .. .+=+|+... ... .+..++..+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-------~~~~--~~-----~~~~v~v~~----~~~-~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-------SGAP--VV-----DGGRVYVGT----SDG-SLYALDAKT 95 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-------GSGE--EE-----ETTEEEEEE----TTS-EEEEEETTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-------ccee--ee-----ccccccccc----cee-eeEecccCC
Confidence 6777777667889999999999865322222211 0010 11 111222221 111 566677666
Q ss_pred C--cEE-ecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCce--eEE-ECCCCCCCC-----CeeeE
Q 017755 180 D--TWR-RTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK--FYE-VQQPHGMKG-----GFCSQ 248 (366)
Q Consensus 180 ~--~W~-~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~--~~~-i~~P~~~~~-----~~~~~ 248 (366)
+ .|+ .....+...........+.++.+|..... ..|.++|+++.+ |+. +..|..... .....
T Consensus 96 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 96 GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEE
T ss_pred cceeeeeccccccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccc
Confidence 5 798 44332221111111233345566555543 389999998765 443 233332210 01234
Q ss_pred EEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCC
Q 017755 249 VGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDH 328 (366)
Q Consensus 249 l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~ 328 (366)
+...+|.+++...... .+.+ -++. .+..|.+. +. .. . .....+++.+++...++.++.+|++|+
T Consensus 169 ~~~~~~~v~~~~~~g~--~~~~-d~~t--g~~~w~~~--~~--~~-----~--~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 169 PVISDGRVYVSSGDGR--VVAV-DLAT--GEKLWSKP--IS--GI-----Y--SLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EECCTTEEEEECCTSS--EEEE-ETTT--TEEEEEEC--SS---E-----C--ECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred eEEECCEEEEEcCCCe--EEEE-ECCC--CCEEEEec--CC--Cc-----c--CCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 4444676666554332 2232 2221 12235221 21 11 1 112346776888776778999999999
Q ss_pred cEEE
Q 017755 329 KQDV 332 (366)
Q Consensus 329 ~~~~ 332 (366)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.24 E-value=1.5 Score=40.35 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=83.5
Q ss_pred eEEEec-ccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecc---cc-
Q 017755 94 TSVIGC-CHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYK---VD- 168 (366)
Q Consensus 94 ~~~~~s-~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~---~~- 168 (366)
..+.+- .+-+|++ +.....+|+++.|.....+|.+.... . .-....+| ++ +.++..... ..
T Consensus 69 ~~F~al~gskIv~~-d~~~~t~vyDt~t~av~~~P~l~~pk-~-----~pisv~VG-----~~--LY~m~~~~~~~~~~~ 134 (342)
T PF07893_consen 69 MDFFALHGSKIVAV-DQSGRTLVYDTDTRAVATGPRLHSPK-R-----CPISVSVG-----DK--LYAMDRSPFPEPAGR 134 (342)
T ss_pred eEEEEecCCeEEEE-cCCCCeEEEECCCCeEeccCCCCCCC-c-----ceEEEEeC-----Ce--EEEeeccCccccccC
Confidence 444444 3334444 34567999999999999999876543 1 11111221 22 444432210 11
Q ss_pred ----eeEEEEEE--------cCCCcEEecCCCCceeec------CCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCc
Q 017755 169 ----YLEVIIYS--------LKADTWRRTREFPYYILD------DRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSE 230 (366)
Q Consensus 169 ----~~~~~vys--------s~~~~W~~~~~~p~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e 230 (366)
.+++-+|. .++-+|+.++.+|..... ....+|+ +|.--|+...+.. ..-.+||.++.
T Consensus 135 ~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~ 209 (342)
T PF07893_consen 135 PDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESH 209 (342)
T ss_pred ccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCc
Confidence 33333443 123478888765533222 1223556 8988888665421 26899999999
Q ss_pred eeEEE---CCCCCCCCC----eeeEEEEE--C--CEEEEEEecC
Q 017755 231 KFYEV---QQPHGMKGG----FCSQVGVL--R--GCLWINSYYH 263 (366)
Q Consensus 231 ~~~~i---~~P~~~~~~----~~~~l~~~--~--G~L~~v~~~~ 263 (366)
+|+.. .||...... -...++.. + |.||......
T Consensus 210 ~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 210 EWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred ceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 99986 889866321 12333333 3 3787766644
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.08 E-value=0.064 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=31.7
Q ss_pred CceEECCeEEEEEee--CCCCCCcceEEEEECCCceeEEECC
Q 017755 198 NGVFIAGALHWLAAR--GSVRTGQNMILAFDLKSEKFYEVQQ 237 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~--~~~~~~~~~i~~fD~~~e~~~~i~~ 237 (366)
..++++|+||.++.. .........+-.||+++++|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 468999999999988 3333445689999999999998743
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.95 E-value=2.1 Score=37.34 Aligned_cols=223 Identities=14% Similarity=0.177 Sum_probs=122.8
Q ss_pred EEEecccceEEeeec-CceEEEEcCCCcceEecCCCCCCCccCCC-----CCCe----eEeEEeecCCCCCeeEEEEEEe
Q 017755 95 SVIGCCHGLLAMFNR-RLGMSVFNPTTKKFKLFPQFWSDCYTDYM-----TNNF----HFDGFGYDASTDDYKLVRIIQS 164 (366)
Q Consensus 95 ~~~~s~nGLl~~~~~-~~~~~V~NP~t~~~~~lP~~~~~~~~~~~-----~~~~----~~~~~g~d~~~~~ykVv~~~~~ 164 (366)
.+--+-+|-|-+... .+.+==.||.|++..+.|-..-.. +++. +..+ .....-+|+.+..++=+-+-.+
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~-Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGAS-PHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCC-CceEEECCCCCeeEecCcceeEEecCcccceEEeecccc
Confidence 344455776654432 223335699999998887654332 2211 0011 0111223444444444444333
Q ss_pred cccceeEEEEEEcCCCcEEecCC-----C-Cc----e----eecCCCCceEE--CCeEEEEEeeCCCCCCcceEEEEECC
Q 017755 165 YKVDYLEVIIYSLKADTWRRTRE-----F-PY----Y----ILDDRCNGVFI--AGALHWLAARGSVRTGQNMILAFDLK 228 (366)
Q Consensus 165 ~~~~~~~~~vyss~~~~W~~~~~-----~-p~----~----~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~ 228 (366)
.....++..||+...+.|-.-.. + |. . .......++++ +|.+|+....+ ..|.-.|+.
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~ 218 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPF 218 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccc
Confidence 34567888899999999954321 1 10 0 11112235544 79998876665 489999999
Q ss_pred CceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCC
Q 017755 229 SEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDG 308 (366)
Q Consensus 229 ~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g 308 (366)
+..-+.++.|..........-..-.|++.+.+.... .+-..+. ...+|.. +.++...- ....+.+...|
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g----~l~rfdP--s~~sW~e-ypLPgs~a----rpys~rVD~~g 287 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG----SLHRFDP--SVTSWIE-YPLPGSKA----RPYSMRVDRHG 287 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCc----eeeEeCc--cccccee-eeCCCCCC----CcceeeeccCC
Confidence 998889999998643322222233466665533222 2333333 2355753 32332221 23335555555
Q ss_pred CeEEEEEcC-CeEEEEECCCCcEEEEEEe
Q 017755 309 DKALIYQHS-RCLHWYNLKDHKQDVIEIR 336 (366)
Q Consensus 309 ~~i~l~~~~-~~l~~ydl~t~~~~~v~~~ 336 (366)
. |.+...+ ..+..+|++|.+++++.+.
T Consensus 288 r-VW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 288 R-VWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred c-EEeeccccCceeecCcccceEEEecCC
Confidence 5 7765433 3499999999999998553
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.92 E-value=4 Score=39.92 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHccCCccceeeeeecccccccccCChhHHH
Q 017755 1 MSSLPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQDFVK 42 (366)
Q Consensus 1 ~~~LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~F~~ 42 (366)
+..||.++...||..|+.+++++++.||+.|+.+..+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999998665544
No 45
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=1.2 Score=40.28 Aligned_cols=184 Identities=13% Similarity=0.187 Sum_probs=109.3
Q ss_pred eEEEEEEcCCCcEEecCC-CCceeecCCCCceEECC-eEEEEEeeCCC--------------------------------
Q 017755 170 LEVIIYSLKADTWRRTRE-FPYYILDDRCNGVFIAG-ALHWLAARGSV-------------------------------- 215 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~~-~p~~~~~~~~~~v~~~G-~lyw~~~~~~~-------------------------------- 215 (366)
..+..|++.+++|..+.. .|.... ..+++..++ .+|+.+.....
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~--G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLV--GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeEEecCCCChhheeccccccccc--cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 357889999999999874 455522 234566666 88888765431
Q ss_pred -CCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCC--CCeEEEEEEeecCCCCCeeEEEEecCC
Q 017755 216 -RTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHD--EPRCDIWVMKEYGSQQSWSKLCSFSKM 291 (366)
Q Consensus 216 -~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~~ 291 (366)
-.....+++||+.+++|+.. ..|.....+ ..++.-+++|.++...-. -.+-.+|+.+-.++..+|.++...+.+
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 01335899999999999998 578766322 223333567888877532 224566776655456889988655443
Q ss_pred CCCCcceeEEE-EEEe--CCCeEEEEE-------------------c------CCeEEEEECCCCcEEEEE-EecCCCce
Q 017755 292 LHETCYYTEAF-AFSK--DGDKALIYQ-------------------H------SRCLHWYNLKDHKQDVIE-IRNENQSF 342 (366)
Q Consensus 292 ~~~~~~~~~~~-~~~~--~g~~i~l~~-------------------~------~~~l~~ydl~t~~~~~v~-~~~~~~~~ 342 (366)
.-... ..+. ++.. +++ +++.. . .+.++.+| ++.|+.+. ++-. ..+
T Consensus 269 ~~~~~--eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~-l~Y 342 (381)
T COG3055 269 IGSNK--EGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG-LAY 342 (381)
T ss_pred CCCCc--cccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC-ccc
Confidence 32111 1111 1111 233 33221 1 12366666 89999883 4322 345
Q ss_pred eeeeeeecccccccCCcccee
Q 017755 343 WDAFICMGSLASIDAYTTVGV 363 (366)
Q Consensus 343 ~~~~~y~~sl~~~~~~~~~~~ 363 (366)
--...|-+.++.|.+.+.=|+
T Consensus 343 G~s~~~nn~vl~IGGE~~~Gk 363 (381)
T COG3055 343 GVSLSYNNKVLLIGGETSGGK 363 (381)
T ss_pred eEEEecCCcEEEEccccCCCe
Confidence 567777788888877655444
No 46
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.15 E-value=3.4 Score=39.15 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=101.9
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCC--cEEecCC-
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKAD--TWRRTRE- 187 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~--~W~~~~~- 187 (366)
.++.|+|-+|+||.. |...-+. +. .-..++|.+| .. |++.+....+-.+..=+.|.+... .||.+..
T Consensus 57 DELHvYNTatnqWf~-PavrGDi-Pp----gcAA~Gfvcd--Gt--rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDI-PP----GCAAFGFVCD--GT--RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhccccceeec-chhcCCC-CC----chhhcceEec--Cc--eEEEEccEeeeccccchHHHhhhhhhhHhhcCCC
Confidence 478999999999963 4433222 11 1223344444 22 455444322234455567777665 5666642
Q ss_pred -----CCceeecCCCCceEECCeEEEEEeeCCCCC----------CcceEEEEECCCce--eEEE----CCCCCCCCCee
Q 017755 188 -----FPYYILDDRCNGVFIAGALHWLAARGSVRT----------GQNMILAFDLKSEK--FYEV----QQPHGMKGGFC 246 (366)
Q Consensus 188 -----~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~----------~~~~i~~fD~~~e~--~~~i----~~P~~~~~~~~ 246 (366)
.|..... ..+-+.++.+.|.++.-..+.. ...+++-+-..... |... .+|...+.+..
T Consensus 127 ~p~nG~pPCPRl-GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTA 205 (830)
T KOG4152|consen 127 TPKNGPPPCPRL-GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTA 205 (830)
T ss_pred CCCCCCCCCCcc-CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccccee
Confidence 1222111 1123566789999887544321 12355555544443 4432 33433333222
Q ss_pred eEEEEEC-C--EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc--------eeEEEEEE-e--CCCeEE
Q 017755 247 SQVGVLR-G--CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY--------YTEAFAFS-K--DGDKAL 312 (366)
Q Consensus 247 ~~l~~~~-G--~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~--------~~~~~~~~-~--~g~~i~ 312 (366)
..-.+-+ | ++++.....+..-=++|.|+- +..+|.+-.--...+++... .+-+++=| + ..+ +=
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~-~~ 282 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDD-VK 282 (830)
T ss_pred EEEEeccCCcceEEEEcccccccccceeEEec--ceeecccccccCCCCCCcccccceeecceeEEecceeeeeccc-cc
Confidence 2222333 2 444444433331238999996 35789875433333443211 11111100 0 000 11
Q ss_pred EEEcC------CeEEEEECCCCcEEEEEE
Q 017755 313 IYQHS------RCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 313 l~~~~------~~l~~ydl~t~~~~~v~~ 335 (366)
...++ ..+-++|++|..|+.+-+
T Consensus 283 ~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 283 VATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred cccccceeeeccceeeeeecchheeeeee
Confidence 11111 239999999999999854
No 47
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.66 E-value=5.8 Score=33.83 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=74.1
Q ss_pred EEEEEEcCCC--cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEE-ECCCCCCCCCeee
Q 017755 171 EVIIYSLKAD--TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYE-VQQPHGMKGGFCS 247 (366)
Q Consensus 171 ~~~vyss~~~--~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~ 247 (366)
.+..++..++ .|+.--..+..... ..++..+|.+|..... ..+.++|..+.+-.. ..+|.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~---- 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPV--ATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPISG---- 70 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEE--ETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGGS----
T ss_pred EEEEEECCCCCEEEEEECCCCCCCcc--ceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccccccc----
Confidence 3566777665 68773211100000 0134477888877433 389999987655322 244444321
Q ss_pred EEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeE-EEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 248 QVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSK-LCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 248 ~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
.....+|.+++.... . .++.++....+..|.. ...-+.... .......-+|+.+++......++.+|++
T Consensus 71 ~~~~~~~~v~v~~~~----~-~l~~~d~~tG~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD----G-SLYALDAKTGKVLWSIYLTSSPPAGV-----RSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp GEEEETTEEEEEETT----S-EEEEEETTTSCEEEEEEE-SSCTCST-----B--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred eeeecccccccccce----e-eeEecccCCcceeeeecccccccccc-----ccccCceEecCEEEEEeccCcEEEEecC
Confidence 136667888777632 1 5666653223567873 322111111 1111111126667777767779999999
Q ss_pred CCcEEEE
Q 017755 327 DHKQDVI 333 (366)
Q Consensus 327 t~~~~~v 333 (366)
|++...-
T Consensus 141 tG~~~w~ 147 (238)
T PF13360_consen 141 TGKLLWK 147 (238)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 9987433
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.52 E-value=0.22 Score=31.07 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=23.8
Q ss_pred ceEE-CCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCC
Q 017755 199 GVFI-AGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQP 238 (366)
Q Consensus 199 ~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 238 (366)
++.+ ++.+|..++..........+..||+++++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4555 588888887654322234789999999999988 444
No 49
>smart00612 Kelch Kelch domain.
Probab=92.19 E-value=0.32 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCcEEecCCCCceee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYIL 193 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~ 193 (366)
...+++|++++++|+.++.+|....
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~ 38 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRS 38 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccc
Confidence 4568999999999999988776543
No 50
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.11 E-value=7.3 Score=33.69 Aligned_cols=206 Identities=15% Similarity=0.133 Sum_probs=109.6
Q ss_pred EEecccceEEeee-cCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEE
Q 017755 96 VIGCCHGLLAMFN-RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVII 174 (366)
Q Consensus 96 ~~~s~nGLl~~~~-~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~v 174 (366)
+.+..+|-|...+ ...+++.++|.+++...+..+. ..++.++...+.+.|.. .....+
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------------~~G~~~~~~~g~l~v~~--------~~~~~~ 64 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------------PNGMAFDRPDGRLYVAD--------SGGIAV 64 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------------EEEEEEECTTSEEEEEE--------TTCEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------------CceEEEEccCCEEEEEE--------cCceEE
Confidence 3444455555554 5678999999999876543332 22455553223322221 233455
Q ss_pred EEcCCCcEEecCCCCce---eecCCCCceEECCeEEEEEeeCCCCCCc--ceEEEEECCCceeEEE----CCCCCCCCCe
Q 017755 175 YSLKADTWRRTREFPYY---ILDDRCNGVFIAGALHWLAARGSVRTGQ--NMILAFDLKSEKFYEV----QQPHGMKGGF 245 (366)
Q Consensus 175 yss~~~~W~~~~~~p~~---~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~i~~fD~~~e~~~~i----~~P~~~~~~~ 245 (366)
++..++.++.+...+.. ......-.+--+|.+|.-.......... -.+..+|.. .+.+.+ ..|.+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG----- 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG----- 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE-----
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc-----
Confidence 68889988877654211 1111111344478877765543322222 469999999 554443 23322
Q ss_pred eeEEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEe-cCCCCCCcceeEEEEEEeCCCeEEEEEc-CCeEEE
Q 017755 246 CSQVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSF-SKMLHETCYYTEAFAFSKDGDKALIYQH-SRCLHW 322 (366)
Q Consensus 246 ~~~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ 322 (366)
-...-+| .|++...... .||.++-......+.....+ ......+ ...-+++..+|. |++... ..++..
T Consensus 139 --i~~s~dg~~lyv~ds~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g--~pDG~~vD~~G~-l~va~~~~~~I~~ 209 (246)
T PF08450_consen 139 --IAFSPDGKTLYVADSFNG----RIWRFDLDADGGELSNRRVFIDFPGGPG--YPDGLAVDSDGN-LWVADWGGGRIVV 209 (246)
T ss_dssp --EEEETTSSEEEEEETTTT----EEEEEEEETTTCCEEEEEEEEE-SSSSC--EEEEEEEBTTS--EEEEEETTTEEEE
T ss_pred --eEECCcchheeecccccc----eeEEEeccccccceeeeeeEEEcCCCCc--CCCcceEcCCCC-EEEEEcCCCEEEE
Confidence 2222245 4666554333 47777754333446644433 2222211 244477788888 777653 457999
Q ss_pred EECCCCcEEEEEEec
Q 017755 323 YNLKDHKQDVIEIRN 337 (366)
Q Consensus 323 ydl~t~~~~~v~~~~ 337 (366)
||++.+..+.+.+..
T Consensus 210 ~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 210 FDPDGKLLREIELPV 224 (246)
T ss_dssp EETTSCEEEEEE-SS
T ss_pred ECCCccEEEEEcCCC
Confidence 999966677787763
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.98 E-value=7.2 Score=33.32 Aligned_cols=215 Identities=13% Similarity=0.070 Sum_probs=111.3
Q ss_pred cceEEee-ecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCC
Q 017755 101 HGLLAMF-NRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 101 nGLl~~~-~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~ 179 (366)
+|=-|+. .....+-+|||..+..+.-=.. +++ ..--....+|. =|+..- .....+.+++..|
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsg-----hG~---EVlD~~~s~Dn----skf~s~-----GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSG-----HGH---EVLDAALSSDN----SKFASC-----GGDKAVQVWDVNT 90 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecC-----CCc---eeeeccccccc----cccccC-----CCCceEEEEEccc
Confidence 4444443 3567889999998876542111 110 11112233332 222221 2345567777777
Q ss_pred C----cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCE
Q 017755 180 D----TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGC 255 (366)
Q Consensus 180 ~----~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~ 255 (366)
+ +||....--....+...++|.+.|.+ + ..+-++|..+..++.++.=....++ ..-....+.
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf------D------~s~r~wDCRS~s~ePiQildea~D~--V~Si~v~~h 156 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSF------D------SSVRLWDCRSRSFEPIQILDEAKDG--VSSIDVAEH 156 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccc------c------ceeEEEEcccCCCCccchhhhhcCc--eeEEEeccc
Confidence 5 56655421122333333456655543 2 4899999999999988775555432 122223344
Q ss_pred EEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc---eeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEE
Q 017755 256 LWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY---YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 256 L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~---~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~ 332 (366)
..+.....+ +++.+-+. ...+...+ -..-+.+.++|+..+...-+..+-..|-+|+++-.
T Consensus 157 eIvaGS~DG--tvRtydiR---------------~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 157 EIVAGSVDG--TVRTYDIR---------------KGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred EEEeeccCC--cEEEEEee---------------cceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 433333322 34444443 33322222 24447888999977777777779999999998755
Q ss_pred EEEecCCCceeeeeeeecccccccCCcccee
Q 017755 333 IEIRNENQSFWDAFICMGSLASIDAYTTVGV 363 (366)
Q Consensus 333 v~~~~~~~~~~~~~~y~~sl~~~~~~~~~~~ 363 (366)
......|.++---+.+.+|..-.-++-+-|+
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCce
Confidence 4222112233333334444444444444333
No 52
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=90.97 E-value=4.7 Score=34.68 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=81.6
Q ss_pred CcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCcee-EEECCCCCCCC---------CeeeEE
Q 017755 180 DTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKF-YEVQQPHGMKG---------GFCSQV 249 (366)
Q Consensus 180 ~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~---------~~~~~l 249 (366)
+.|...-.+|...... ..|+.||.+|+..... ..|+.||+.++.- ....+|..... .....+
T Consensus 56 ~~~~~~~~lp~~~~gT--g~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~ 127 (249)
T KOG3545|consen 56 GRKAEKYRLPYSWDGT--GHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL 127 (249)
T ss_pred cCcceEEeCCCCcccc--ceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccc
Confidence 4555555566555544 4799999999988655 4899999998543 44466655521 135788
Q ss_pred EEECCEEEEEEecCC-CCeEEEEEEeec--CCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcCCeE-EEEE
Q 017755 250 GVLRGCLWINSYYHD-EPRCDIWVMKEY--GSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCL-HWYN 324 (366)
Q Consensus 250 ~~~~G~L~~v~~~~~-~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~~~l-~~yd 324 (366)
++.+.-|.++-...+ .+.+.|-.|+.. .....|.--. +........ .|.++.+..... .....+ +.||
T Consensus 128 avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~--~k~~~~~aF~iCGvLY~v~S~~-----~~~~~i~yayd 200 (249)
T KOG3545|consen 128 AVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTL--PKRSAGNAFMICGVLYVVHSYN-----CTHTQISYAYD 200 (249)
T ss_pred eecccceeEEecccccCCcEEeeccCHHHhheeeeecccc--CCCCcCceEEEeeeeEEEeccc-----cCCceEEEEEE
Confidence 888888888777543 336677777752 2235563211 111111100 122222211100 112223 7999
Q ss_pred CCCCcEEEEEE
Q 017755 325 LKDHKQDVIEI 335 (366)
Q Consensus 325 l~t~~~~~v~~ 335 (366)
..+++-+.+.+
T Consensus 201 t~~~~~~~~~i 211 (249)
T KOG3545|consen 201 TTTGTQERIDL 211 (249)
T ss_pred cCCCceecccc
Confidence 99999988865
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.90 E-value=13 Score=34.19 Aligned_cols=121 Identities=11% Similarity=0.249 Sum_probs=73.3
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEECCCce--eEE---ECCCCCCCCCeeeEEEEE-CC-EEEEEEecCCCCeEEEEEEee
Q 017755 203 AGALHWLAARGSVRTGQNMILAFDLKSEK--FYE---VQQPHGMKGGFCSQVGVL-RG-CLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 203 ~G~lyw~~~~~~~~~~~~~i~~fD~~~e~--~~~---i~~P~~~~~~~~~~l~~~-~G-~L~~v~~~~~~~~l~iW~l~~ 275 (366)
+|+..|+...+. +.|..|++..+. +.. +.+|.+.. -.++.-. +| .+|++.... +.+.++.++.
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~G---PRh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~ 223 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSG---PRHLAFSPDGKYAYVVNELS--NTVSVFDYDP 223 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSS---EEEEEE-TTSSEEEEEETTT--TEEEEEEEET
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCC---CcEEEEcCCcCEEEEecCCC--CcEEEEeecc
Confidence 577777776553 578888887665 533 46666542 2233333 45 455554433 3788888884
Q ss_pred cCCCCCeeEEEEecCCCC--CCcceeEEEEEEeCCCeEEEEEcC-CeEEEEEC--CCCcEEEEEE
Q 017755 276 YGSQQSWSKLCSFSKMLH--ETCYYTEAFAFSKDGDKALIYQHS-RCLHWYNL--KDHKQDVIEI 335 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~--~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~ydl--~t~~~~~v~~ 335 (366)
. ...+.....+....- .+.....-+.++++|+.+|+.... ..+.+|++ ++++++.++.
T Consensus 224 ~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 224 S--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp T--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred c--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 2 346777777765422 111146668889999988886543 45888887 6788988854
No 54
>PF13964 Kelch_6: Kelch motif
Probab=90.60 E-value=0.55 Score=29.35 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=19.8
Q ss_pred CceEEEEcCCCcceEecCCCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSD 132 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~ 132 (366)
...+.++||.|++|..+|+++..
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 45799999999999999988743
No 55
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.12 E-value=2.7 Score=32.58 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=54.0
Q ss_pred ceEEEEECCCc--eeEEECCCCCCCC-----------CeeeEEEEECCEEEEEEecCC--------CCeEEEEEEeec-C
Q 017755 220 NMILAFDLKSE--KFYEVQQPHGMKG-----------GFCSQVGVLRGCLWINSYYHD--------EPRCDIWVMKEY-G 277 (366)
Q Consensus 220 ~~i~~fD~~~e--~~~~i~~P~~~~~-----------~~~~~l~~~~G~L~~v~~~~~--------~~~l~iW~l~~~-~ 277 (366)
..|+..|+-.+ .++.+++|..... .....+++.+|+|-++..... .-.+..|.|+.. +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 36888999865 5677888876621 134678888999988887532 236899999984 2
Q ss_pred CCCCeeEEEEecCCCC
Q 017755 278 SQQSWSKLCSFSKMLH 293 (366)
Q Consensus 278 ~~~~W~~~~~i~~~~~ 293 (366)
...+|.+-+++....+
T Consensus 86 ~~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCCEEEeEEEEhhhc
Confidence 3578999998887665
No 56
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.67 E-value=0.48 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.7
Q ss_pred ccceeEEEEEEcCCCcEEecCCCC
Q 017755 166 KVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 166 ~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
......+++|+..+++|+.+++||
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CceeeeEEEEeCCCCEEEEcCCCC
Confidence 466789999999999999998765
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.42 E-value=13 Score=32.16 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=92.6
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCC----ceeEEECCCCCCCC-
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKS----EKFYEVQQPHGMKG- 243 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~----e~~~~i~~P~~~~~- 243 (366)
.....+|++.+++++.+.. ....++.. ..+.-||.+.-.+....+ ...+-.|++.+ ..|.. .|..+..
T Consensus 45 ~a~s~~yD~~tn~~rpl~v-~td~FCSg-g~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e--~~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV-QTDTFCSG-GAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTE--SPNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEeccC-CCCCcccC-cCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceE--CcccccCC
Confidence 5567899999999998863 33333332 345668888766655432 24678888875 45543 3333321
Q ss_pred CeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCC-CCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEE
Q 017755 244 GFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGS-QQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLH 321 (366)
Q Consensus 244 ~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~ 321 (366)
.+......+ +|++.++...... ..+.|=-+.... ...|..+..... .. ....+-.+.+.++|+ ||+....+ -.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~-t~E~~P~~~~~~~~~~~~~l~~~~~-~~-~~nlYP~~~llPdG~-lFi~an~~-s~ 192 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP-TYEFWPPKGPGPGPVTLPFLSQTSD-TL-PNNLYPFVHLLPDGN-LFIFANRG-SI 192 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC-cccccCCccCCCCceeeecchhhhc-cC-ccccCceEEEcCCCC-EEEEEcCC-cE
Confidence 134444444 6899888887643 455553322111 111211111111 00 001233355667998 77766655 77
Q ss_pred EEECCCCcE-EEE-EEecCCCceeeeeeeecccc
Q 017755 322 WYNLKDHKQ-DVI-EIRNENQSFWDAFICMGSLA 353 (366)
Q Consensus 322 ~ydl~t~~~-~~v-~~~~~~~~~~~~~~y~~sl~ 353 (366)
.||.+++++ +.+ .+.|. .+.++...|-+
T Consensus 193 i~d~~~n~v~~~lP~lPg~----~R~YP~sgssv 222 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPGG----PRNYPASGSSV 222 (243)
T ss_pred EEeCCCCeEEeeCCCCCCC----ceecCCCcceE
Confidence 889999976 555 34443 34555554433
No 58
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.05 E-value=16 Score=32.68 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=114.7
Q ss_pred eEEeeecC-ceEEEEcCCCcceE-ecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEE-EecccceeEEEEEEcCC
Q 017755 103 LLAMFNRR-LGMSVFNPTTKKFK-LFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRII-QSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 103 Ll~~~~~~-~~~~V~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~vyss~~ 179 (366)
.|.+..++ ...+|+|+.+++.. .+.+++... .+..-.| .+ +=+.+... .+.+...-.+-||+..
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~f--s~---dG~~LytTEnd~~~g~G~IgVyd~~- 85 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVF--SP---DGRLLYTTENDYETGRGVIGVYDAA- 85 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEE--cC---CCCEEEEeccccCCCcEEEEEEECc-
Confidence 34555444 45679999999976 444433222 1111112 22 11222222 2333456678888887
Q ss_pred CcEEecCCCC------ceeecC-CC-CceEECCeEEEEEeeCC---CC-CCcceEEEEECCCcee-EEECCCCCCCCCee
Q 017755 180 DTWRRTREFP------YYILDD-RC-NGVFIAGALHWLAARGS---VR-TGQNMILAFDLKSEKF-YEVQQPHGMKGGFC 246 (366)
Q Consensus 180 ~~W~~~~~~p------~~~~~~-~~-~~v~~~G~lyw~~~~~~---~~-~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~ 246 (366)
++.+.+.+.+ ...... .. .=|+.||-+.=-...+. +. ..+-+++-+|..+.+. ....+|...+...-
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 4555554433 222211 11 24677887755433321 11 1234788888888775 55688877644346
Q ss_pred eEEEEEC-CEEEEEEecCCCC---eEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcC-CeE
Q 017755 247 SQVGVLR-GCLWINSYYHDEP---RCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHS-RCL 320 (366)
Q Consensus 247 ~~l~~~~-G~L~~v~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~-~~l 320 (366)
.+|+.-. |.+++....+... .--+...+.. +. ......+........ +...++++.+|+.|.+.+.. ..+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---Cc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 6777764 7777777765421 1112222211 11 112222211111112 68889999999867776644 359
Q ss_pred EEEECCCCcEEEE
Q 017755 321 HWYNLKDHKQDVI 333 (366)
Q Consensus 321 ~~ydl~t~~~~~v 333 (366)
.+||..|+.+...
T Consensus 242 ~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 242 AVWDAATGRLLGS 254 (305)
T ss_pred EEEECCCCCEeec
Confidence 9999999998666
No 59
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=88.37 E-value=4.6 Score=34.61 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=56.3
Q ss_pred eEEEEEEeecC----CCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEEEecCCCce
Q 017755 267 RCDIWVMKEYG----SQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNENQSF 342 (366)
Q Consensus 267 ~l~iW~l~~~~----~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~~~~~~~~ 342 (366)
.+.-|.-.+.. -+..|..+........+- -....+...+..+.|++...+..++.+|+++++.+++ ++|+ ..+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~ev-PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~-~rGH-tDY 158 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEV-PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE-YRGH-TDY 158 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccC-CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE-EcCC-cce
Confidence 56667655432 245676543222111110 0355567776666699988888899999999999877 3444 344
Q ss_pred eeeeeeecccccccCCccceeec
Q 017755 343 WDAFICMGSLASIDAYTTVGVDT 365 (366)
Q Consensus 343 ~~~~~y~~sl~~~~~~~~~~~~~ 365 (366)
.++..-.++=-.+-+|.+-|-+|
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred eeeeeecccCcceeecCCCccEE
Confidence 45555445545555555555554
No 60
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.35 E-value=23 Score=33.40 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=67.3
Q ss_pred EECCeEEEEEeeCCCCCCcceEEEEECCCce---eEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecC
Q 017755 201 FIAGALHWLAARGSVRTGQNMILAFDLKSEK---FYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYG 277 (366)
Q Consensus 201 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~---~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~ 277 (366)
..++.+|.++.... ....|++.|+.+-. |..+-.|... +..-..+...++.|.+.........+.++-++
T Consensus 285 ~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~--- 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD--- 357 (414)
T ss_dssp EETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEEETT---
T ss_pred ccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEEECC---
Confidence 45778888887432 23689999999765 5543333222 11234556668888887776663244444444
Q ss_pred CCCCeeEEEEecCCCCCCcceeEEEEE--EeCCCeEEEEEcC----CeEEEEECCCCcEEEEE
Q 017755 278 SQQSWSKLCSFSKMLHETCYYTEAFAF--SKDGDKALIYQHS----RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 278 ~~~~W~~~~~i~~~~~~~~~~~~~~~~--~~~g~~i~l~~~~----~~l~~ydl~t~~~~~v~ 334 (366)
..|.. ..+..... ..+.++ ..+++.+++...+ ..++.||+++++.+.+.
T Consensus 358 --~~~~~-~~~~~p~~-----g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 --DGKES-REIPLPEA-----GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ---TEEE-EEEESSSS-----SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred --CCcEE-eeecCCcc-----eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 13543 33444332 222333 3466767776543 24999999999998874
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.14 E-value=21 Score=32.81 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=65.6
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCC---C-----eEEEEEEee----cCCCCCeeEEEEe
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDE---P-----RCDIWVMKE----YGSQQSWSKLCSF 288 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~---~-----~l~iW~l~~----~~~~~~W~~~~~i 288 (366)
..+.||.++...... |.-............+|+||+....... . .+++-.... ......|.... +
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~-L 163 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS-L 163 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-C
Confidence 588999988877744 4322111223444458889988875321 0 344443331 12245565443 4
Q ss_pred cCCCCCCcc-----eeEEEEEEeCCCeEEEEEcCC--eEEEEECCCCcEEEE
Q 017755 289 SKMLHETCY-----YTEAFAFSKDGDKALIYQHSR--CLHWYNLKDHKQDVI 333 (366)
Q Consensus 289 ~~~~~~~~~-----~~~~~~~~~~g~~i~l~~~~~--~l~~ydl~t~~~~~v 333 (366)
+.+++.... .....++. +|..|++..... +-+.||.++.+|+++
T Consensus 164 P~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 164 PPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 444432221 15556666 788899977654 699999999999999
No 62
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.09 E-value=23 Score=33.16 Aligned_cols=188 Identities=10% Similarity=0.126 Sum_probs=95.2
Q ss_pred ccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCC
Q 017755 100 CHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 100 ~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~ 179 (366)
.+|.|.+......++.+|+.|++.+.--..+... .....+. ++ +|+... ..-.+..++..+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~--------~ssP~v~-----~~-~v~v~~-----~~g~l~ald~~t 179 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA--------LSRPVVS-----DG-LVLVHT-----SNGMLQALNESD 179 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCce--------ecCCEEE-----CC-EEEEEC-----CCCEEEEEEccC
Confidence 3566666555678889999998753311111110 0000111 11 222211 122466667766
Q ss_pred C--cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCce--eEE-ECCCCCCCC-----CeeeEE
Q 017755 180 D--TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK--FYE-VQQPHGMKG-----GFCSQV 249 (366)
Q Consensus 180 ~--~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~--~~~-i~~P~~~~~-----~~~~~l 249 (366)
+ .|+.-...|.........++..+|.+|+....+ .+.++|..+.+ |+. +..|..... .....-
T Consensus 180 G~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP 252 (394)
T PRK11138 180 GAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP 252 (394)
T ss_pred CCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCCCc
Confidence 5 688754322111111234677888888865443 78999998754 643 233322110 001223
Q ss_pred EEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 250 GVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 250 ~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
...+|.|++.... . .+..++-...+..|.+.. . .. ..+. .+++.||+...++.++.+|.++++
T Consensus 253 ~v~~~~vy~~~~~-g----~l~ald~~tG~~~W~~~~--~--~~-----~~~~---~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 253 VVVGGVVYALAYN-G----NLVALDLRSGQIVWKREY--G--SV-----NDFA---VDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred EEECCEEEEEEcC-C----eEEEEECCCCCEEEeecC--C--Cc-----cCcE---EECCEEEEEcCCCeEEEEECCCCc
Confidence 3457777766542 1 234444322345676421 1 11 1111 134558887777789999999886
Q ss_pred E
Q 017755 330 Q 330 (366)
Q Consensus 330 ~ 330 (366)
.
T Consensus 316 ~ 316 (394)
T PRK11138 316 E 316 (394)
T ss_pred E
Confidence 4
No 63
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=87.91 E-value=2.3 Score=31.76 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=36.3
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEE
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIY 175 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vy 175 (366)
-.++++||.||.|... .+... ......+-+++..+.|+|+.....+..-...+++|
T Consensus 9 A~Vm~~d~~tk~W~P~--~~~~~-------~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~ 64 (111)
T cd01207 9 ASVMVYDDSNKKWVPA--GGGSQ-------GFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIV 64 (111)
T ss_pred EEeeEEcCCCCcEEcC--CCCCC-------CcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEec
Confidence 4688999999996544 33211 34456677788889999999764433333444444
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.35 E-value=18 Score=33.92 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=63.1
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCc--eeEEECCCCCC--CC-----CeeeEEEEECCEEEEEEecCCCCeE
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSE--KFYEVQQPHGM--KG-----GFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~--~~-----~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
.+++.+|.+|.....+ .+.+||.++. .|+. +++... .. .........+|++++.... =
T Consensus 64 sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-----g 130 (394)
T PRK11138 64 HPAVAYNKVYAADRAG-------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-----G 130 (394)
T ss_pred ccEEECCEEEEECCCC-------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC-----C
Confidence 4788999999877653 7999998754 4643 332210 00 0112345567787765431 1
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~ 332 (366)
.+..++....+..|.... .... ...|+.. ++.+++...+..++.+|++|++...
T Consensus 131 ~l~ald~~tG~~~W~~~~--~~~~-----~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKV--AGEA-----LSRPVVS---DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEEECCCCCCcccccC--CCce-----ecCCEEE---CCEEEEECCCCEEEEEEccCCCEee
Confidence 345555332356786432 2111 1233322 3447776666679999999988543
No 65
>PLN02772 guanylate kinase
Probab=87.34 E-value=4.3 Score=37.74 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=52.2
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE----CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEE
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV----QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVM 273 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l 273 (366)
.+|.+++++|.+++..........+-+||..+.+|..- ..|... ++ +..+..-+++|.++...... .=+||.|
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r-~G-hSa~v~~~~rilv~~~~~~~-~~~~w~l 105 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC-KG-YSAVVLNKDRILVIKKGSAP-DDSIWFL 105 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC-Cc-ceEEEECCceEEEEeCCCCC-ccceEEE
Confidence 47899999999997554322346899999999999764 233333 22 33444447899988876554 4689999
Q ss_pred ee
Q 017755 274 KE 275 (366)
Q Consensus 274 ~~ 275 (366)
+-
T Consensus 106 ~~ 107 (398)
T PLN02772 106 EV 107 (398)
T ss_pred Ec
Confidence 74
No 66
>smart00612 Kelch Kelch domain.
Probab=86.83 E-value=2 Score=25.87 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=17.3
Q ss_pred ceEEEEECCCceeEEE-CCCCCC
Q 017755 220 NMILAFDLKSEKFYEV-QQPHGM 241 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~i-~~P~~~ 241 (366)
..+.+||+.+.+|+.+ ++|...
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcc
Confidence 4789999999999887 555443
No 67
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.67 E-value=15 Score=32.25 Aligned_cols=126 Identities=12% Similarity=0.064 Sum_probs=78.8
Q ss_pred ceEEEecccceEEeee-cCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeE
Q 017755 93 HTSVIGCCHGLLAMFN-RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLE 171 (366)
Q Consensus 93 ~~~~~~s~nGLl~~~~-~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 171 (366)
.+-++++-||-|-... ..+-+.-.||.+..--.+|++.... .. .-.++.||- .-+.+.. ...-.
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~-~g-------sRriwsdpi----g~~witt---wg~g~ 255 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALK-AG-------SRRIWSDPI----GRAWITT---WGTGS 255 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccc-cc-------ccccccCcc----CcEEEec---cCCce
Confidence 3558888888885543 3456677899999888888776532 11 112344443 2223332 34566
Q ss_pred EEEEEcCCCcEEecCCCCceeecCCCCceEECC-eEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCC
Q 017755 172 VIIYSLKADTWRRTREFPYYILDDRCNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM 241 (366)
Q Consensus 172 ~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 241 (366)
+..|+..+.+|.+-.-..... +..+++++. -.-|+..-+. ..|..||+++++|++++.|..-
T Consensus 256 l~rfdPs~~sW~eypLPgs~a---rpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 256 LHRFDPSVTSWIEYPLPGSKA---RPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eeEeCcccccceeeeCCCCCC---CcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCC
Confidence 788999999998764211111 112455543 4556655443 4899999999999999887654
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.28 E-value=8.3 Score=34.11 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=49.3
Q ss_pred CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 254 GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 254 G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
+-|..+..+.. .+++|.++..+.-.. .-...++.+. --.+..++|..||....+..+-.||+.+++...|
T Consensus 40 ~~~~~A~SWD~--tVR~wevq~~g~~~~-ka~~~~~~Pv-------L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 40 DNLLAAGSWDG--TVRIWEVQNSGQLVP-KAQQSHDGPV-------LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred CceEEecccCC--ceEEEEEecCCcccc-hhhhccCCCe-------EEEEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 44444555555 799999997532111 1122222222 2256667898899988888899999999999999
Q ss_pred EEecC
Q 017755 334 EIRNE 338 (366)
Q Consensus 334 ~~~~~ 338 (366)
..+..
T Consensus 110 ~~Hd~ 114 (347)
T KOG0647|consen 110 AAHDA 114 (347)
T ss_pred eeccc
Confidence 87643
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.96 E-value=27 Score=31.69 Aligned_cols=138 Identities=8% Similarity=0.069 Sum_probs=69.2
Q ss_pred eEEEEEEcCC-CcEEecCCCCceeecCCCCceEE--CCe-EEEEEeeCCCCCCcceEEEEECC-CceeEEEC-CCCCCCC
Q 017755 170 LEVIIYSLKA-DTWRRTREFPYYILDDRCNGVFI--AGA-LHWLAARGSVRTGQNMILAFDLK-SEKFYEVQ-QPHGMKG 243 (366)
Q Consensus 170 ~~~~vyss~~-~~W~~~~~~p~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~-~e~~~~i~-~P~~~~~ 243 (366)
-.+.+|+..+ +.++.+..++... ....+.+ +|+ +|...... ..|.+|++. +.+++.+. .|... .
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~---~~~~l~~spd~~~lyv~~~~~------~~i~~~~~~~~g~l~~~~~~~~~~-~ 81 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPG---QVQPMVISPDKRHLYVGVRPE------FRVLSYRIADDGALTFAAESPLPG-S 81 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCC---CCccEEECCCCCEEEEEECCC------CcEEEEEECCCCceEEeeeecCCC-C
Confidence 3456666643 5666554332211 1122333 465 44433322 478888886 45565442 22211 1
Q ss_pred CeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC-CeEE
Q 017755 244 GFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS-RCLH 321 (366)
Q Consensus 244 ~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~ 321 (366)
-..+... +|+..++.... .+.+.+|.++..+. ....+..+.... ..+-+++.++|+.+|+.... ..+.
T Consensus 82 --p~~i~~~~~g~~l~v~~~~-~~~v~v~~~~~~g~--~~~~~~~~~~~~-----~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 82 --PTHISTDHQGRFLFSASYN-ANCVSVSPLDKDGI--PVAPIQIIEGLE-----GCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred --ceEEEECCCCCEEEEEEcC-CCeEEEEEECCCCC--CCCceeeccCCC-----cccEeEeCCCCCEEEEeeCCCCEEE
Confidence 1233333 46544443332 23799999875321 122222222111 23446678899877776643 5699
Q ss_pred EEECCC
Q 017755 322 WYNLKD 327 (366)
Q Consensus 322 ~ydl~t 327 (366)
+||+++
T Consensus 152 v~d~~~ 157 (330)
T PRK11028 152 LFTLSD 157 (330)
T ss_pred EEEECC
Confidence 999976
No 70
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=85.32 E-value=2.1 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=25.6
Q ss_pred CCeEEEEEeeCC-CCCCcceEEEEECCCceeEEE-CCCCCC
Q 017755 203 AGALHWLAARGS-VRTGQNMILAFDLKSEKFYEV-QQPHGM 241 (366)
Q Consensus 203 ~G~lyw~~~~~~-~~~~~~~i~~fD~~~e~~~~i-~~P~~~ 241 (366)
++++|..+.... .......+.+||+.+.+|+.+ ++|...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 356666665551 122225789999999999998 555543
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.84 E-value=0.19 Score=46.22 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHccCCccceeeeeecccccccccCChh
Q 017755 3 SLPLDLISDILSRLPVKPLLRFRCVSKCFCGLIDSQD 39 (366)
Q Consensus 3 ~LP~Dll~~Il~rLP~~~l~r~~~VcK~W~~li~~~~ 39 (366)
.||.+++..||+.|..++++|++.+|+.|+.+..|-.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 5999999999999999999999999999999887643
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.84 E-value=25 Score=32.61 Aligned_cols=107 Identities=12% Similarity=0.221 Sum_probs=55.8
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCce--eEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEee
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK--FYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~ 275 (366)
.+++.+|.+|.....+ .+.+||..+.+ |+ .+++.... ...+..++.+++.... . .++.++.
T Consensus 60 ~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~-~~~~~~~~----~~p~v~~~~v~v~~~~-g----~l~ald~ 122 (377)
T TIGR03300 60 QPAVAGGKVYAADADG-------TVVALDAETGKRLWR-VDLDERLS----GGVGADGGLVFVGTEK-G----EVIALDA 122 (377)
T ss_pred ceEEECCEEEEECCCC-------eEEEEEccCCcEeee-ecCCCCcc----cceEEcCCEEEEEcCC-C----EEEEEEC
Confidence 4678888888776543 79999987654 54 24443321 1233345555544321 1 2333332
Q ss_pred cCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEE
Q 017755 276 YGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQD 331 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~ 331 (366)
...+..|... +.... ...|.. .++.+++...++.++.+|+++++..
T Consensus 123 ~tG~~~W~~~--~~~~~-----~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 123 EDGKELWRAK--LSSEV-----LSPPLV---ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred CCCcEeeeec--cCcee-----ecCCEE---ECCEEEEECCCCeEEEEEcCCCcee
Confidence 2123456432 11111 111222 2344777666667999999888753
No 73
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.88 E-value=29 Score=30.43 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred ECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCC
Q 017755 202 IAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQ 280 (366)
Q Consensus 202 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~ 280 (366)
-+|.+|=-++... .-.|-.+|+.+++.. ..++|... +---++..+++|+.++-.+. ..-++-. .
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~---FgEGit~~~d~l~qLTWk~~--~~f~yd~------~ 118 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY---FGEGITILGDKLYQLTWKEG--TGFVYDP------N 118 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESSSS--EEEEEET------T
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc---cceeEEEECCEEEEEEecCC--eEEEEcc------c
Confidence 4677776665433 358999999998774 56998876 44578888999999988665 3333332 2
Q ss_pred CeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc-EEEEEE
Q 017755 281 SWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK-QDVIEI 335 (366)
Q Consensus 281 ~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~-~~~v~~ 335 (366)
...++.++.++. .+ -|.+.+|+.+++.....++...|+++=+ .+.|.+
T Consensus 119 tl~~~~~~~y~~-EG------WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 119 TLKKIGTFPYPG-EG------WGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp TTEEEEEEE-SS-S--------EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred cceEEEEEecCC-cc------eEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 355666666542 11 3455678867777666679999998754 455544
No 74
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=82.98 E-value=60 Score=33.37 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=65.6
Q ss_pred eEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCC
Q 017755 200 VFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGS 278 (366)
Q Consensus 200 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~ 278 (366)
|..+|+.--.+.++ ..|-+.++.+..-...--+... ....|.-. +|.+..+....+ .+.||.+++...
T Consensus 104 v~g~g~~iaagsdD------~~vK~~~~~D~s~~~~lrgh~a---pVl~l~~~p~~~fLAvss~dG--~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDD------TAVKLLNLDDSSQEKVLRGHDA---PVLQLSYDPKGNFLAVSSCDG--KVQIWDLQDGIL 172 (933)
T ss_pred EecCCcEEEeecCc------eeEEEEeccccchheeecccCC---ceeeeeEcCCCCEEEEEecCc--eEEEEEcccchh
Confidence 44445555555554 3566666665443332222221 11112111 354444444444 699999997644
Q ss_pred CCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 279 QQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 279 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
...|..+..-..... -..+.-++.+++|..+++...+..+.+|+.++......
T Consensus 173 ~~tl~~v~k~n~~~~--s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFIL--SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred hhhcccCCccccccc--cceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 566765442221111 11466678888866677777777799999877665444
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.85 E-value=32 Score=30.07 Aligned_cols=190 Identities=14% Similarity=0.024 Sum_probs=87.8
Q ss_pred cCceEEEEcCCCcceEe-cCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCC
Q 017755 109 RRLGMSVFNPTTKKFKL-FPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTRE 187 (366)
Q Consensus 109 ~~~~~~V~NP~t~~~~~-lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~ 187 (366)
..+.+.+||+.+++... ++... . ...+.++|..+ ++ .+... ....+.+|+.++.+= +..
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~----------~--~~~~~~~~~g~--~l-~~~~~---~~~~l~~~d~~~~~~--~~~ 110 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGP----------D--PELFALHPNGK--IL-YIANE---DDNLVTVIDIETRKV--LAE 110 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCC----------C--ccEEEECCCCC--EE-EEEcC---CCCeEEEEECCCCeE--EeE
Confidence 45678999999887643 43221 1 11345565433 22 22111 123577788776431 111
Q ss_pred CCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEE-ECCCCCCCCCeeeEEEEECCEEEEEEecCCCC
Q 017755 188 FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYE-VQQPHGMKGGFCSQVGVLRGCLWINSYYHDEP 266 (366)
Q Consensus 188 ~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~ 266 (366)
++..... ..-.+.-+|.+.+.+.... ..+..+|..+.+... +..+... ....+ .-+|+..++..... +
T Consensus 111 ~~~~~~~-~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~---~~~~~-s~dg~~l~~~~~~~-~ 179 (300)
T TIGR03866 111 IPVGVEP-EGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP---RFAEF-TADGKELWVSSEIG-G 179 (300)
T ss_pred eeCCCCc-ceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc---cEEEE-CCCCCEEEEEcCCC-C
Confidence 1111000 0001223566665554432 246667887655432 2221111 11111 22455443433222 2
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCC-CcceeEEEEEEeCCCeEEEEEc-CCeEEEEECCCCcEEEE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHE-TCYYTEAFAFSKDGDKALIYQH-SRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~t~~~~~v 333 (366)
.+.+|-++.. +-.+.......... ......-+.+.++|+.+++... +..+..||+++++....
T Consensus 180 ~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 180 TVSVIDVATR----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred EEEEEEcCcc----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 7899987642 11111111111110 0001223567788987676543 34599999998876543
No 76
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.50 E-value=65 Score=33.44 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=93.4
Q ss_pred eEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCc-
Q 017755 103 LLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADT- 181 (366)
Q Consensus 103 Ll~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~- 181 (366)
+|...+.++.+.|||..+++....-.. . ......+.+.|..+.+-+.+ .....+.+|+..++.
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~--H--------~~~V~~l~~~p~~~~~L~Sg------s~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKE--H--------EKRVWSIDYSSADPTLLASG------SDDGSVKLWSINQGVS 610 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecC--C--------CCCEEEEEEcCCCCCEEEEE------cCCCEEEEEECCCCcE
Confidence 444444567889999887765432111 1 11233566665444432222 123457777776542
Q ss_pred EEecCCCCceeecCCCCceEE---CCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEE
Q 017755 182 WRRTREFPYYILDDRCNGVFI---AGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWI 258 (366)
Q Consensus 182 W~~~~~~p~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~ 258 (366)
...+..- ... ..+.. +|.....+..+ ..|..+|+.+..-....+..+. .....+.-.+|...+
T Consensus 611 ~~~~~~~-~~v-----~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~~~~~lv 676 (793)
T PLN00181 611 IGTIKTK-ANI-----CCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFVDSSTLV 676 (793)
T ss_pred EEEEecC-CCe-----EEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCC--CCEEEEEEeCCCEEE
Confidence 2222110 000 01111 35544444443 3788999876431111111111 112223223555444
Q ss_pred EEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 259 NSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 259 v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
...... .+.||.+........|..+..+....- ....+++.++|..+.....++.+.+|+..+..
T Consensus 677 s~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~----~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 677 SSSTDN--TLKLWDLSMSISGINETPLHSFMGHTN----VKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEECCC--EEEEEeCCCCccccCCcceEEEcCCCC----CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 443333 799999874321224555554432111 24457778888755555567779999987654
No 77
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=80.44 E-value=3.8 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=14.8
Q ss_pred cceeEEEEEEcCCCcEEecCCCC
Q 017755 167 VDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 167 ~~~~~~~vyss~~~~W~~~~~~p 189 (366)
.....+.+|+..+++|+.++.+|
T Consensus 26 ~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EE---EEEEETTTTEEEE--SS-
T ss_pred cccCCEEEEECCCCEEEECCCCC
Confidence 45567899999999999997665
No 78
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.06 E-value=48 Score=30.38 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=86.1
Q ss_pred EeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCc--EEecCC--CCceeecCCCCceEECCeEEEEEeeCCCCCCc
Q 017755 144 FDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADT--WRRTRE--FPYYILDDRCNGVFIAGALHWLAARGSVRTGQ 219 (366)
Q Consensus 144 ~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~--W~~~~~--~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~ 219 (366)
...+.++|..+. -+|. . ...-.+.+|+...+. ...... +|.+..+ +.-.+.-+|+.-++..+..
T Consensus 146 ~H~v~~~pdg~~-v~v~--d---lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP-Rh~~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 146 PHQVVFSPDGRF-VYVP--D---LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP-RHLAFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEEE-TTSSE-EEEE--E---TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE-EEEEE-TTSSEEEEEETTT-----
T ss_pred ceeEEECCCCCE-EEEE--e---cCCCEEEEEEEeCCCceEEEeeccccccCCCC-cEEEEcCCcCEEEEecCCC-----
Confidence 445677775333 2222 1 133457777776544 544221 1211000 0001122565544444432
Q ss_pred ceEEEEECC--CceeEEE----CCCCCCCCC-eeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCC
Q 017755 220 NMILAFDLK--SEKFYEV----QQPHGMKGG-FCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKM 291 (366)
Q Consensus 220 ~~i~~fD~~--~e~~~~i----~~P~~~~~~-~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 291 (366)
..|.+|++. +..++.+ .+|...... ....+... +|+..++.... .+.+.++.++.. .+.-..+..+...
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~--~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPA--TGTLTLVQTVPTG 290 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTT--TTTEEEEEEEEES
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecC--CCceEEEEEEeCC
Confidence 367777766 6666554 455543221 23445444 46544444433 338999999653 2345555555432
Q ss_pred CCCCcceeEEEEEEeCCCeEEEEEcC-CeEEEE--ECCCCcEEEEE
Q 017755 292 LHETCYYTEAFAFSKDGDKALIYQHS-RCLHWY--NLKDHKQDVIE 334 (366)
Q Consensus 292 ~~~~~~~~~~~~~~~~g~~i~l~~~~-~~l~~y--dl~t~~~~~v~ 334 (366)
.- ...-+.+.++|+.+++.... ..+.+| |.+|++++.+.
T Consensus 291 G~----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 291 GK----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp SS----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CC----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 21 24557888999988877644 345554 67899998885
No 79
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.89 E-value=47 Score=30.17 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEECCCceeEEE---CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCC
Q 017755 203 AGALHWLAARGSVRTGQNMILAFDLKSEKFYEV---QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQ 279 (366)
Q Consensus 203 ~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~ 279 (366)
+|..-|...-+. +.|..||++....+.. .++.+. +...-..--+|+++++...-.. ++.+|..+.. .
T Consensus 155 ~~~~l~v~DLG~-----Dri~~y~~~dg~L~~~~~~~v~~G~--GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~--~ 224 (346)
T COG2706 155 DGRYLVVPDLGT-----DRIFLYDLDDGKLTPADPAEVKPGA--GPRHIVFHPNGKYAYLVNELNS-TVDVLEYNPA--V 224 (346)
T ss_pred CCCEEEEeecCC-----ceEEEEEcccCccccccccccCCCC--CcceEEEcCCCcEEEEEeccCC-EEEEEEEcCC--C
Confidence 455555555443 5788888876555432 333332 1223334446888776554443 8999999874 3
Q ss_pred CCeeEEEEecCCC--CCCcceeEEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEEEEe
Q 017755 280 QSWSKLCSFSKML--HETCYYTEAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVIEIR 336 (366)
Q Consensus 280 ~~W~~~~~i~~~~--~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v~~~ 336 (366)
.+-..+..|...+ +.+.....-+.+.++|..++...... .++..|..+++++-+...
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 5566666555322 22333677788889999666654322 278889999998888653
No 80
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=79.67 E-value=58 Score=31.02 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=79.4
Q ss_pred EEEEEEcCCCcEEecC-CCCceeecCC----------CCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCC
Q 017755 171 EVIIYSLKADTWRRTR-EFPYYILDDR----------CNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPH 239 (366)
Q Consensus 171 ~~~vyss~~~~W~~~~-~~p~~~~~~~----------~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~ 239 (366)
.+.+|++.+++=+.++ ++|....... ..-..++|.++-+...+ ....+++-..-- ++.|.
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~--iqv~~ 358 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYS--IQVGK 358 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCee--EEcCC
Confidence 4567777777766665 4443311100 01356788888888776 466666544333 23333
Q ss_pred CCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCe
Q 017755 240 GMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRC 319 (366)
Q Consensus 240 ~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~ 319 (366)
...- ....+......+ +....+.+.+.|.-.+.. ++.+|...-- ..-.+++.++|+.+++..+..+
T Consensus 359 ~~~V-rY~r~~~~~e~~--vigt~dgD~l~iyd~~~~-------e~kr~e~~lg----~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 359 KGGV-RYRRIQVDPEGD--VIGTNDGDKLGIYDKDGG-------EVKRIEKDLG----NIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred CCce-EEEEEccCCcce--EEeccCCceEEEEecCCc-------eEEEeeCCcc----ceEEEEEcCCCcEEEEEcCceE
Confidence 2211 233333333333 333233336777666532 1233332211 2445778889998888777778
Q ss_pred EEEEECCCCcEEEEE
Q 017755 320 LHWYNLKDHKQDVIE 334 (366)
Q Consensus 320 l~~ydl~t~~~~~v~ 334 (366)
+.++|++|++.+.+.
T Consensus 425 l~vididngnv~~id 439 (668)
T COG4946 425 LWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEecCCCeeEec
Confidence 999999999999983
No 81
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=79.10 E-value=39 Score=28.77 Aligned_cols=119 Identities=8% Similarity=0.101 Sum_probs=62.4
Q ss_pred EECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCC--CCCe-eeEEEEE--CC--EEEEEEec---CCCCeEEE
Q 017755 201 FIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM--KGGF-CSQVGVL--RG--CLWINSYY---HDEPRCDI 270 (366)
Q Consensus 201 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~--~~~~-~~~l~~~--~G--~L~~v~~~---~~~~~l~i 270 (366)
.+||-+ .+... ..+.+.|+.|.++..++.|... .... ...++-. .+ ++..+... .....++|
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 568887 33332 2799999999999998766542 1111 1222221 12 22222111 11225677
Q ss_pred EEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC-----eEEEEECCCCcEEE-EEEe
Q 017755 271 WVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR-----CLHWYNLKDHKQDV-IEIR 336 (366)
Q Consensus 271 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~-----~l~~ydl~t~~~~~-v~~~ 336 (366)
..+.. .+|...... ..... .... ++.-+|..-++..... .++.||+++++++. +..+
T Consensus 75 ys~~~----~~Wr~~~~~-~~~~~---~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 75 YTLGS----NSWRTIECS-PPHHP---LKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEeCC----CCccccccC-CCCcc---ccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 77764 479776521 11111 1111 3344666333333221 59999999999995 7654
No 82
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.93 E-value=55 Score=30.33 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=75.5
Q ss_pred eEEEEEEcCCCcEEec-CCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCce--eEEECCC-CCCCCCe
Q 017755 170 LEVIIYSLKADTWRRT-REFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK--FYEVQQP-HGMKGGF 245 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~-~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~--~~~i~~P-~~~~~~~ 245 (366)
........++..|..- ........... .+++.+|++|.....+ .|.+||+++.+ |+.-..+ ... .
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~-~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~---~ 103 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGGIYAGP-APADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQ---L 103 (370)
T ss_pred eEEEcccCcceeeeeecccCccceEecc-ccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCccee---c
Confidence 3444455566788643 11111111111 1589999999985554 79999999876 7544333 111 1
Q ss_pred eeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEEC
Q 017755 246 CSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNL 325 (366)
Q Consensus 246 ~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl 325 (366)
...+..-+|++++-.... .++.++.......|.....- .. ....+ .+..++. |++...+..++..|.
T Consensus 104 ~~~~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~---~~---~~~~~-~v~~~~~-v~~~s~~g~~~al~~ 170 (370)
T COG1520 104 SGPILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG---SP---YYASP-PVVGDGT-VYVGTDDGHLYALNA 170 (370)
T ss_pred cCceEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC---Ce---EEecC-cEEcCcE-EEEecCCCeEEEEEc
Confidence 222233377766554432 67777763334667653322 11 11222 2222343 666555567999999
Q ss_pred CCCcEEEE
Q 017755 326 KDHKQDVI 333 (366)
Q Consensus 326 ~t~~~~~v 333 (366)
+|++.+..
T Consensus 171 ~tG~~~W~ 178 (370)
T COG1520 171 DTGTLKWT 178 (370)
T ss_pred cCCcEEEE
Confidence 98887554
No 83
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.24 E-value=68 Score=30.47 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=105.0
Q ss_pred CceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
...+++.|..|++...|-..+.. .. ...+.|. ++ +++..... .....+.+++..++.++.+...+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~---------~~--~~~~SPD-G~-~la~~~~~--~g~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM---------LV--VSDVSKD-GS-KLLLTMAP--KGQPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc---------EE--eeEECCC-CC-EEEEEEcc--CCCcEEEEEECCCCcEEEcccCC
Confidence 45899999999998887543211 11 1223332 22 33332221 23567788888889999886433
Q ss_pred ceeecCCCCceEECC-eEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCC----
Q 017755 190 YYILDDRCNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHD---- 264 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~---- 264 (366)
... ......-+| .+|+...... ...|...|+.+.+.+.+-.- .. ........++.|.++.....
T Consensus 277 ~~d---~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~-g~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 277 GID---VNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH-GK---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Ccc---CccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccC-CC---cCceECCCCCEEEEEEcCCCcccC
Confidence 210 011233356 5777765432 14789999998887554221 11 11122222344555554321
Q ss_pred CCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEEEE
Q 017755 265 EPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 265 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v~~ 335 (366)
....+|++++-.+ ..+..+-. ... .. ...+.+||+.|++....+ .+..++++.++-..+..
T Consensus 346 ~~~~~I~v~d~~~--g~~~~LT~---~~~----~~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNS--DYIRRLTA---NGV----NQ-FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcEEEEEECCC--CCeEECCC---CCC----cC-CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 1247899987532 33433322 111 12 245788999888876432 39999998877777754
No 84
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.24 E-value=55 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCceEECCeEEEEEeeCCCCCCcceEEEEECCC--ceeEE
Q 017755 196 RCNGVFIAGALHWLAARGSVRTGQNMILAFDLKS--EKFYE 234 (366)
Q Consensus 196 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~--e~~~~ 234 (366)
+..+++++|++|...... .++++|..| +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 345899999999987653 799999985 55764
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=76.45 E-value=49 Score=28.46 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred ceEE--CCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEE-ECCEEEEEEecCCCCeEEEEEEee
Q 017755 199 GVFI--AGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGV-LRGCLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 199 ~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~-~~G~L~~v~~~~~~~~l~iW~l~~ 275 (366)
+++. +|.+||..... ..|..+|+.+++.+.+.+|.. ...... -+|+|++.... .+.+. +
T Consensus 5 p~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~----~~~~~--d- 66 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG----GIAVV--D- 66 (246)
T ss_dssp EEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT----CEEEE--E-
T ss_pred eEEECCCCEEEEEEcCC------CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC----ceEEE--e-
Confidence 4555 69999997665 389999999999988887771 222333 35788776542 23333 3
Q ss_pred cCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---------CeEEEEECCCCcEEEE
Q 017755 276 YGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---------RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~ydl~t~~~~~v 333 (366)
. ...+++.+........ ......-+++.++|. +++.... ..++.++++ ++.+.+
T Consensus 67 ~-~~g~~~~~~~~~~~~~-~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 67 P-DTGKVTVLADLPDGGV-PFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp T-TTTEEEEEEEEETTCS-CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred c-CCCcEEEEeeccCCCc-ccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 2 2356777776632110 011455678888888 7776432 348899998 666665
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.91 E-value=60 Score=29.17 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=63.0
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCce-eEEECCCCCCCCCeeeEEEEECCEE---EEEEecCCCCeEEEEEE
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK-FYEVQQPHGMKGGFCSQVGVLRGCL---WINSYYHDEPRCDIWVM 273 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~~~~~~l~~~~G~L---~~v~~~~~~~~l~iW~l 273 (366)
.+|.++|-.---+..+ ..|-.||+.+.. ...+--|.+. ..-....+.+ .++...++. .+.+|..
T Consensus 47 tavAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Hags-----itaL~F~~~~S~shLlS~sdDG-~i~iw~~ 114 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHAGS-----ITALKFYPPLSKSHLLSGSDDG-HIIIWRV 114 (362)
T ss_pred eEEEecceeEeccCCC------CcEEEEeccchhhhcceeccccc-----eEEEEecCCcchhheeeecCCC-cEEEEEc
Confidence 3567777544433333 479999998643 3333333222 1111122222 455554444 7999987
Q ss_pred eecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 274 KEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 274 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
++ |..+..+..-.- ...-+.++|.|+.-+=...+..+-.+|+-+++.-.+
T Consensus 115 ~~------W~~~~slK~H~~----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 115 GS------WELLKSLKAHKG----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred CC------eEEeeeeccccc----ccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence 64 887776654332 255577777777333334444577777766665444
No 87
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=75.78 E-value=63 Score=29.40 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=72.1
Q ss_pred eEEEEEeeCCCCCCcceEEEEECCC--ceeEEE-CCCCCCCCCeeeEEEEEC-CEEEEEEecCCCCeEEEEEEeecCCCC
Q 017755 205 ALHWLAARGSVRTGQNMILAFDLKS--EKFYEV-QQPHGMKGGFCSQVGVLR-GCLWINSYYHDEPRCDIWVMKEYGSQQ 280 (366)
Q Consensus 205 ~lyw~~~~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~~~~~~~~l~~~~-G~L~~v~~~~~~~~l~iW~l~~~~~~~ 280 (366)
.||-....+.. ..|.+|.... ++.+.+ ..+..... ..++.+.+ |++.++..... +.+.+.-+++.+ .
T Consensus 53 ~LY~v~~~~~~----ggvaay~iD~~~G~Lt~ln~~~~~g~~--p~yvsvd~~g~~vf~AnY~~-g~v~v~p~~~dG--~ 123 (346)
T COG2706 53 HLYVVNEPGEE----GGVAAYRIDPDDGRLTFLNRQTLPGSP--PCYVSVDEDGRFVFVANYHS-GSVSVYPLQADG--S 123 (346)
T ss_pred EEEEEEecCCc----CcEEEEEEcCCCCeEEEeeccccCCCC--CeEEEECCCCCEEEEEEccC-ceEEEEEcccCC--c
Confidence 57777766432 4677776664 688877 22222211 24555554 44333333222 379999988653 4
Q ss_pred CeeEEEEecCCCC-C---Ccc-eeEEEEEEeCCCeEEEEE-cCCeEEEEECCCCcEEEEE
Q 017755 281 SWSKLCSFSKMLH-E---TCY-YTEAFAFSKDGDKALIYQ-HSRCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 281 ~W~~~~~i~~~~~-~---~~~-~~~~~~~~~~g~~i~l~~-~~~~l~~ydl~t~~~~~v~ 334 (366)
-|..+..+....- + ... +.+...+.++|+.++... ..++++.|+++.++++...
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence 4555444443322 1 111 578899999999666665 2346999999999988773
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.54 E-value=60 Score=28.54 Aligned_cols=144 Identities=7% Similarity=0.009 Sum_probs=80.1
Q ss_pred cccceeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCce-eEEECCCCCCCC
Q 017755 165 YKVDYLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK-FYEVQQPHGMKG 243 (366)
Q Consensus 165 ~~~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~ 243 (366)
+......+..|++.+++=.....+|...+.. .-..+++++|-+++... ..+.||..+-+ -..++.|.+
T Consensus 63 G~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE--Git~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~y~~E--- 131 (264)
T PF05096_consen 63 GLYGQSSLRKVDLETGKVLQSVPLPPRYFGE--GITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFPYPGE--- 131 (264)
T ss_dssp CSTTEEEEEEEETTTSSEEEEEE-TTT--EE--EEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE-SSS---
T ss_pred CCCCcEEEEEEECCCCcEEEEEECCccccce--eEEEECCEEEEEEecCC------eEEEEccccceEEEEEecCCc---
Confidence 3456788899999998765555556544332 24578999999999874 89999998643 344455532
Q ss_pred CeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCC--CCCcceeEEEEEEeCCCeEEEEEcC-CeE
Q 017755 244 GFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKML--HETCYYTEAFAFSKDGDKALIYQHS-RCL 320 (366)
Q Consensus 244 ~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~~~~g~~i~l~~~~-~~l 320 (366)
-.-|+..+..|.+-..+ =.|+.++. +....+.+|.... .+-. ...-+=.. +|. |+-.-.. ..+
T Consensus 132 --GWGLt~dg~~Li~SDGS-----~~L~~~dP----~~f~~~~~i~V~~~g~pv~-~LNELE~i-~G~-IyANVW~td~I 197 (264)
T PF05096_consen 132 --GWGLTSDGKRLIMSDGS-----SRLYFLDP----ETFKEVRTIQVTDNGRPVS-NLNELEYI-NGK-IYANVWQTDRI 197 (264)
T ss_dssp ----EEEECSSCEEEE-SS-----SEEEEE-T----TT-SEEEEEE-EETTEE----EEEEEEE-TTE-EEEEETTSSEE
T ss_pred --ceEEEcCCCEEEEECCc-----cceEEECC----cccceEEEEEEEECCEECC-CcEeEEEE-cCE-EEEEeCCCCeE
Confidence 34555555666665552 35666663 2344455444321 1100 11112221 554 7766533 359
Q ss_pred EEEECCCCcEEEE
Q 017755 321 HWYNLKDHKQDVI 333 (366)
Q Consensus 321 ~~ydl~t~~~~~v 333 (366)
+..|++|+++..+
T Consensus 198 ~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 198 VRIDPETGKVVGW 210 (264)
T ss_dssp EEEETTT-BEEEE
T ss_pred EEEeCCCCeEEEE
Confidence 9999999998665
No 89
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=74.35 E-value=73 Score=29.46 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=91.7
Q ss_pred ccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCC
Q 017755 100 CHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 100 ~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~ 179 (366)
.+|.+.+....+.++.+|+.|++.+.--...... .....+ .++ +|+... ..-.+..++..+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~--------~~~p~v-----~~~-~v~v~~-----~~g~l~a~d~~t 164 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV--------LSPPLV-----ANG-LVVVRT-----NDGRLTALDAAT 164 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCcee--------ecCCEE-----ECC-EEEEEC-----CCCeEEEEEcCC
Confidence 3666666555667888888888754311111110 000011 012 222211 123456667665
Q ss_pred C--cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCc--eeEE-ECCCCCCCC-----CeeeEE
Q 017755 180 D--TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSE--KFYE-VQQPHGMKG-----GFCSQV 249 (366)
Q Consensus 180 ~--~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e--~~~~-i~~P~~~~~-----~~~~~l 249 (366)
+ .|+.-...+.........++..+|.+|.-... ..+.++|+.++ .|+. +..|..... ......
T Consensus 165 G~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~-------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 165 GERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG-------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP 237 (377)
T ss_pred CceeeEEccCCCceeecCCCCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc
Confidence 5 68764432211111122467778877654432 27999999765 4543 233322110 001122
Q ss_pred EEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 250 GVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 250 ~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
...+|.+++.... . .+..+.++. .+..|.... . . ...|. + .++.|++...++.++.+|.++++
T Consensus 238 ~~~~~~vy~~~~~-g--~l~a~d~~t--G~~~W~~~~--~--~-----~~~p~-~--~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 238 VVDGGQVYAVSYQ-G--RVAALDLRS--GRVLWKRDA--S--S-----YQGPA-V--DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEECCEEEEEEcC-C--EEEEEECCC--CcEEEeecc--C--C-----ccCce-E--eCCEEEEECCCCeEEEEECCCCc
Confidence 3346777665542 2 344444442 235575431 1 1 12222 2 34457777766779999998886
Q ss_pred E
Q 017755 330 Q 330 (366)
Q Consensus 330 ~ 330 (366)
.
T Consensus 301 ~ 301 (377)
T TIGR03300 301 E 301 (377)
T ss_pred E
Confidence 4
No 90
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=74.12 E-value=7.8 Score=23.91 Aligned_cols=38 Identities=24% Similarity=0.576 Sum_probs=27.6
Q ss_pred eEEEEECCEEEEEEec----CCCCeEEEEEEeecCCCCCeeEEE
Q 017755 247 SQVGVLRGCLWINSYY----HDEPRCDIWVMKEYGSQQSWSKLC 286 (366)
Q Consensus 247 ~~l~~~~G~L~~v~~~----~~~~~l~iW~l~~~~~~~~W~~~~ 286 (366)
...++.+++|+++... .....-++|+++. .+.+|..+.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~--~t~~W~~~~ 46 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT--ETNQWTELS 46 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEEC--CCCEEeecC
Confidence 3566789999999987 1233568999986 357898764
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.53 E-value=60 Score=31.89 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=63.0
Q ss_pred CCceEECCeEEEEEeeCCCCCCcceEEEEECCC--ceeEEE-CCCCCCCC-----CeeeEEEEECCEEEEEEecCCCCeE
Q 017755 197 CNGVFIAGALHWLAARGSVRTGQNMILAFDLKS--EKFYEV-QQPHGMKG-----GFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 197 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~~~-----~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
..+++.+|.+|...... .|.++|..+ +.|+.- ..|..... .....++..+|++++.... =
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-----g 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-----A 130 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-----C
Confidence 35789999999866543 699999986 456643 33322210 0122345556777665432 1
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc------CCeEEEEECCCCcEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH------SRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~------~~~l~~ydl~t~~~~~v 333 (366)
.+..++....+..|..... ....-. ..-..|+.. +| .|++... +..++.+|.+|++...-
T Consensus 131 ~l~ALDa~TGk~~W~~~~~-~~~~~~-~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG-DYKAGY-TITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEECCCCCEEeecccc-cccccc-cccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4555554333456754221 110000 001223322 33 4666542 34699999999986543
No 92
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=73.20 E-value=72 Score=28.85 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=60.4
Q ss_pred CeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCee
Q 017755 204 GALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWS 283 (366)
Q Consensus 204 G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~ 283 (366)
+.+||...... .|+.+|+.+..-+.+..|... ....+..-+|.|..... .+.++..+. ...|+
T Consensus 37 ~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~---~~~~~~d~~g~Lv~~~~-----g~~~~~~~~---~~~~t 99 (307)
T COG3386 37 GALLWVDILGG------RIHRLDPETGKKRVFPSPGGF---SSGALIDAGGRLIACEH-----GVRLLDPDT---GGKIT 99 (307)
T ss_pred CEEEEEeCCCC------eEEEecCCcCceEEEECCCCc---ccceeecCCCeEEEEcc-----ccEEEeccC---CceeE
Confidence 46899887763 899999999999999998876 23344444455544433 233333322 23344
Q ss_pred EEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------------CeEEEEECCCCcEEEE
Q 017755 284 KLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------------RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 284 ~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------------~~l~~ydl~t~~~~~v 333 (366)
....+....-.. ...-..+.++|. +++.... ..++.||+..++.+.+
T Consensus 100 ~~~~~~~~~~~~--r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 100 LLAEPEDGLPLN--RPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred EeccccCCCCcC--CCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 444333222110 122345555665 5554322 1388888854444444
No 93
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=72.96 E-value=10 Score=28.09 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=30.3
Q ss_pred CceEEEEcCCCc-ceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEE
Q 017755 110 RLGMSVFNPTTK-KFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRII 162 (366)
Q Consensus 110 ~~~~~V~NP~t~-~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 162 (366)
.-+++++||.|| .|+.. .+. .....+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs--~~~----------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPA--SKH----------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeC--CCC----------ceeEEEEecCCCcEEEEEEec
Confidence 447899999997 66543 321 235678899999999999964
No 94
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=72.78 E-value=83 Score=29.36 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=50.2
Q ss_pred cceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCe--EEEEEEeecCCCCCeeEEEEecCCCCCC
Q 017755 219 QNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPR--CDIWVMKEYGSQQSWSKLCSFSKMLHET 295 (366)
Q Consensus 219 ~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~--l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 295 (366)
.+.|+..|+.+.+...+ .-..-. .+....-.+..|.+.|....-.. -+||.++..+ ...|....+.. +
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl---gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~-----~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL---GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRME-----G 237 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E---EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---T-----T
T ss_pred CceEEEEECCCCceeEEEecCccc---cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCC-----C
Confidence 47899999999988766 332222 13333333455666655332112 3799999654 34454322211 1
Q ss_pred cceeEEEEEEeCCCeEEEEEc--C---CeEEEEECCCCcEEEE
Q 017755 296 CYYTEAFAFSKDGDKALIYQH--S---RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 296 ~~~~~~~~~~~~g~~i~l~~~--~---~~l~~ydl~t~~~~~v 333 (366)
.-..+.+ +.++|..|+.... . .-+..||++|+.-+.+
T Consensus 238 e~~gHEf-w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 238 ESVGHEF-WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEE-E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred ccccccc-ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 1123333 3457877776542 2 2399999999877655
No 95
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=72.43 E-value=1.2e+02 Score=31.03 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=61.9
Q ss_pred ceEEEEECCCceeEE---ECCCCCCCCCeeeEEEEEC--CEEEEEEecCCCCeEEEEEEeecC----CCCCeeEEEEecC
Q 017755 220 NMILAFDLKSEKFYE---VQQPHGMKGGFCSQVGVLR--GCLWINSYYHDEPRCDIWVMKEYG----SQQSWSKLCSFSK 290 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~---i~~P~~~~~~~~~~l~~~~--G~L~~v~~~~~~~~l~iW~l~~~~----~~~~W~~~~~i~~ 290 (366)
...-.||....+|.. +..|++.. ......+. -+..++....+. .+.||.+.+.+ ....|..+..=.+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~---~vat~~~~~~rs~~~vta~~dg-~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNA---FVATIFLNPTRSVRCVTASVDG-DFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCce---eEEEEEecCcccceeEEeccCC-eEEEEEEecccccCcCccceEEeeeecc
Confidence 355677777778854 58888752 11122121 221333332332 79999996532 2457986543222
Q ss_pred CCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCC-CcEEEE
Q 017755 291 MLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKD-HKQDVI 333 (366)
Q Consensus 291 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t-~~~~~v 333 (366)
... .....++.+||. ++....+..+-.||..+ +.++.+
T Consensus 508 ~k~----~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 508 HKT----PITALCFSQDGS-LLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred ccC----cccchhhcCCCc-EEEEecCCEEEEecCCChhhhhcc
Confidence 222 355678888887 66666666799999999 555444
No 96
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=69.28 E-value=11 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.080 Sum_probs=19.1
Q ss_pred ceEEEEcCCCcceEecCCCCCCC
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDC 133 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~ 133 (366)
..++++||.+++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 47899999999999997766554
No 97
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.71 E-value=14 Score=20.25 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=18.6
Q ss_pred eEEEEEcCCeEEEEECCCCcEEE
Q 017755 310 KALIYQHSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 310 ~i~l~~~~~~l~~ydl~t~~~~~ 332 (366)
.+++...++.++.+|.++++...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 47777777789999999998653
No 98
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.01 E-value=12 Score=21.64 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=18.9
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEE
Q 017755 310 KALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 310 ~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
.|++...++.++.+|.+|++...-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 367776677899999999987554
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.43 E-value=1.2e+02 Score=28.53 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=70.9
Q ss_pred eEEEEEEcCC---CcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCCCe
Q 017755 170 LEVIIYSLKA---DTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKGGF 245 (366)
Q Consensus 170 ~~~~vyss~~---~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~ 245 (366)
..+-..++.. +.|+-+...-... -++.-+|+--.+...+ -.|--||.++..=. .+..-. +.
T Consensus 334 r~i~~wdlDgn~~~~W~gvr~~~v~d-----lait~Dgk~vl~v~~d------~~i~l~~~e~~~dr~lise~~----~i 398 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGNWEGVRDPKVHD-----LAITYDGKYVLLVTVD------KKIRLYNREARVDRGLISEEQ----PI 398 (519)
T ss_pred CcEEEecCCcchhhcccccccceeEE-----EEEcCCCcEEEEEecc------cceeeechhhhhhhccccccC----ce
Confidence 4455555654 4888776421111 1344566544444443 25667776654433 222211 12
Q ss_pred eeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE-cCCeEEEEE
Q 017755 246 CSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ-HSRCLHWYN 324 (366)
Q Consensus 246 ~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~yd 324 (366)
...-..-+|++.++..... ++.+|-+++ |..+........ + .+.---+|....+..+... .+.+++.++
T Consensus 399 ts~~iS~d~k~~LvnL~~q--ei~LWDl~e------~~lv~kY~Ghkq-~-~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQ--EIHLWDLEE------NKLVRKYFGHKQ-G-HFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred eEEEEcCCCcEEEEEcccC--eeEEeecch------hhHHHHhhcccc-c-ceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 2233334689999988666 799999985 333221111110 1 1122234443333233333 345699999
Q ss_pred CCCCcEEEE
Q 017755 325 LKDHKQDVI 333 (366)
Q Consensus 325 l~t~~~~~v 333 (366)
.++++.-.+
T Consensus 469 r~sgkll~~ 477 (519)
T KOG0293|consen 469 RISGKLLAV 477 (519)
T ss_pred ccCCceeEe
Confidence 999887554
No 100
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=65.38 E-value=93 Score=27.09 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=72.5
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCccee
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYT 299 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (366)
.|-+-|+.+..+.....|+.... -..|.+. +|+........+ +.-+|.|........-+-+..+..-. + +.
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~--i~sl~v~~dgsml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~--~--~i 218 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTS--IQSLTVMPDGSMLAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHN--G--HI 218 (311)
T ss_pred cEEEEEccCCccccccCCCCCcc--eeeEEEcCCCcEEEEecCCc--cEEEEEccCCCccccceEhhheeccc--c--eE
Confidence 79999999999998888887632 4455555 455444433344 79999997521111222222222111 1 33
Q ss_pred EEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEEEecCCCceeeeeee
Q 017755 300 EAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNENQSFWDAFIC 348 (366)
Q Consensus 300 ~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~~~~~~~~~~~~~y 348 (366)
.-..+.++++.+.-+..+..+.+++.++-...+..++|. +.|.+-+.|
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~F 266 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAF 266 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeee
Confidence 334567788856556667779999999885556667776 555443333
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=64.80 E-value=95 Score=26.97 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=84.0
Q ss_pred cCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEe-cCC
Q 017755 109 RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRR-TRE 187 (366)
Q Consensus 109 ~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~-~~~ 187 (366)
..+.+.+||+.|++....-.... . ...+.++|..+ + ++... ...-.+.+|+..++.... +..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~---------~--~~~l~~~~dg~-~-l~~~~----~~~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ---------R--PRGITLSKDGK-L-LYVCA----SDSDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC---------C--CCceEECCCCC-E-EEEEE----CCCCeEEEEECCCCcEEEeccC
Confidence 35678899998877543222111 1 11345555432 2 22211 123457778887765533 211
Q ss_pred CCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCcee-EEECCCCCCCCCeeeEEEE-ECCEEEEEEecCCC
Q 017755 188 FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKF-YEVQQPHGMKGGFCSQVGV-LRGCLWINSYYHDE 265 (366)
Q Consensus 188 ~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~l~~-~~G~L~~v~~~~~~ 265 (366)
.... ..-.+.-+|...++..... ..+..+|+.+.+- ..++.+... ..+.. -+|++.++......
T Consensus 72 -~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 72 -GPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPVGVEP-----EGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred -CCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeCCCCc-----ceEEECCCCCEEEEEecCCC
Confidence 1110 0001222455444443322 3788899987543 333322211 11222 24666555543322
Q ss_pred CeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc-CCeEEEEECCCCcE
Q 017755 266 PRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH-SRCLHWYNLKDHKQ 330 (366)
Q Consensus 266 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~t~~~ 330 (366)
.+.+|-++. ......+.... ....+.+.++|..+++... +..+..||+++++.
T Consensus 138 -~~~~~d~~~------~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 138 -MAHFIDTKT------YEIVDNVLVDQ-----RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred -eEEEEeCCC------CeEEEEEEcCC-----CccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 233343321 22222222111 1233677788886666543 55699999998875
No 102
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=64.27 E-value=11 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=17.8
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCC
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKS 229 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~ 229 (366)
.+++.+|.+|.....+ .+.+||.++
T Consensus 16 ~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 4678899999888754 899999875
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=63.82 E-value=1.4e+02 Score=30.71 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=78.0
Q ss_pred ceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE--CCCCCCCCCeeeEEEEEC-CEEEEEEecCCCCeEEEEEEee
Q 017755 199 GVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV--QQPHGMKGGFCSQVGVLR-GCLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 199 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i--~~P~~~~~~~~~~l~~~~-G~L~~v~~~~~~~~l~iW~l~~ 275 (366)
.+...|.+-+++...+ .|-.||+.++--+.- +-|.+. +.-..++..+ +++.+.+..++ .+..|..+.
T Consensus 455 ~vs~CGNF~~IG~S~G------~Id~fNmQSGi~r~sf~~~~ah~--~~V~gla~D~~n~~~vsa~~~G--ilkfw~f~~ 524 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKG------TIDRFNMQSGIHRKSFGDSPAHK--GEVTGLAVDGTNRLLVSAGADG--ILKFWDFKK 524 (910)
T ss_pred EEeccCceEEEeccCC------eEEEEEcccCeeecccccCcccc--CceeEEEecCCCceEEEccCcc--eEEEEecCC
Confidence 3456788888887763 899999998765432 344433 2233444444 67777666655 688888775
Q ss_pred cCCCCCeeEEEEecCCCC------C----Cc-------------------c--eeEEEEEEeCCCeEEEEEcCCeEEEEE
Q 017755 276 YGSQQSWSKLCSFSKMLH------E----TC-------------------Y--YTEAFAFSKDGDKALIYQHSRCLHWYN 324 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~------~----~~-------------------~--~~~~~~~~~~g~~i~l~~~~~~l~~yd 324 (366)
..-..+|..-..+..... . .. + ...-+.|.+||+.++....++.+..||
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 322233433222221110 0 00 0 346678999999998888888899999
Q ss_pred CCCCcEEEE
Q 017755 325 LKDHKQDVI 333 (366)
Q Consensus 325 l~t~~~~~v 333 (366)
+-|+++-..
T Consensus 605 lpt~~lID~ 613 (910)
T KOG1539|consen 605 LPTGTLIDG 613 (910)
T ss_pred ccCcceeee
Confidence 999987554
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=63.66 E-value=1.4e+02 Score=28.57 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=56.5
Q ss_pred ceEEEEECCCceeEEECCCCCCCCCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcce
Q 017755 220 NMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYY 298 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 298 (366)
+.+..||..+.+-..+.-+.+. -..+.+. +|+-.++..+ +++||+.+-.... +..|+..... .
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~----I~av~vs~dGK~~vvaNd----r~el~vididngn-----v~~idkS~~~---l 445 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGN----IEAVKVSPDGKKVVVAND----RFELWVIDIDNGN-----VRLIDKSEYG---L 445 (668)
T ss_pred ceEEEEecCCceEEEeeCCccc----eEEEEEcCCCcEEEEEcC----ceEEEEEEecCCC-----eeEecccccc---e
Confidence 5899999999998888776654 3344444 4665554432 6899998853211 2223322210 2
Q ss_pred eEEEEEEeCCCeEEEEEcC----CeEEEEECCCCcEEEE
Q 017755 299 TEAFAFSKDGDKALIYQHS----RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~~~----~~l~~ydl~t~~~~~v 333 (366)
..-+.+++++..+-....+ +.+..||+++++.-.|
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 3335555565544443332 2477777777776666
No 105
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=62.57 E-value=94 Score=26.15 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=50.3
Q ss_pred eEEEEECCCcee-EEECCCCCCCCCeeeEEEEEC-CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcce
Q 017755 221 MILAFDLKSEKF-YEVQQPHGMKGGFCSQVGVLR-GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYY 298 (366)
Q Consensus 221 ~i~~fD~~~e~~-~~i~~P~~~~~~~~~~l~~~~-G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 298 (366)
.+..+|+.+.+. ..+..... .-..+.... +.+.+...... .+.+|.+.... ....+....- .
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~------~~~~~~~~~~----~ 179 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTD----WVNSVAFSPDGTFVASSSQDG--TIKLWDLRTGK------CVATLTGHTG----E 179 (289)
T ss_pred eEEEEECCCcEEEEEeccCCC----cEEEEEEcCcCCEEEEEcCCC--cEEEEEccccc------cceeEecCcc----c
Confidence 788899985443 33331111 122233333 45444443233 68899886421 1222221110 2
Q ss_pred eEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEE
Q 017755 299 TEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQD 331 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~ 331 (366)
..-+.+.++++.+++...++.+..||+++++..
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 344666777766777766667999999876543
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=59.81 E-value=1.1e+02 Score=27.53 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=74.0
Q ss_pred cceeEEEEEEcCCCcEEecCCCCceeecCCCCce--EECCeEEEEEeeCCCCCCcceEEEEECCCcee-EEECCCCCCCC
Q 017755 167 VDYLEVIIYSLKADTWRRTREFPYYILDDRCNGV--FIAGALHWLAARGSVRTGQNMILAFDLKSEKF-YEVQQPHGMKG 243 (366)
Q Consensus 167 ~~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v--~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~ 243 (366)
.......+|+..|-+--.-.. |..--......| .-+|++|..+..++ .|-.+|=.+++. +.|.- .++
T Consensus 235 TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGVS~rCv~t~~~---AH~ 304 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG------AIKLWDGVSNRCVRTIGN---AHG 304 (430)
T ss_pred cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC------cEEeeccccHHHHHHHHh---hcC
Confidence 345677888887754433222 211110000122 23689999888774 577777665544 22211 122
Q ss_pred Ceee--EEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcC-Ce
Q 017755 244 GFCS--QVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHS-RC 319 (366)
Q Consensus 244 ~~~~--~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~-~~ 319 (366)
+... ....-+|+-.+-.+... .+.+|.+--. .=.+.|. .....+.. ...-..|....+.|++.... ..
T Consensus 305 gsevcSa~Ftkn~kyiLsSG~DS--~vkLWEi~t~----R~l~~Yt--GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s 376 (430)
T KOG0640|consen 305 GSEVCSAVFTKNGKYILSSGKDS--TVKLWEISTG----RMLKEYT--GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS 376 (430)
T ss_pred CceeeeEEEccCCeEEeecCCcc--eeeeeeecCC----ceEEEEe--cCCcccchhhhhhhhhcCccceEEccccccCc
Confidence 2222 23333566555544333 6889988642 1112221 11111111 22234455566767666533 35
Q ss_pred EEEEECCCCcEEEE
Q 017755 320 LHWYNLKDHKQDVI 333 (366)
Q Consensus 320 l~~ydl~t~~~~~v 333 (366)
++.||-+|..-..+
T Consensus 377 lcsWdaRtadr~~l 390 (430)
T KOG0640|consen 377 LCSWDARTADRVAL 390 (430)
T ss_pred eeeccccchhhhhh
Confidence 99999988765544
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=59.59 E-value=1.6e+02 Score=27.95 Aligned_cols=189 Identities=8% Similarity=0.045 Sum_probs=93.8
Q ss_pred EEecccc-eEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEE
Q 017755 96 VIGCCHG-LLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVII 174 (366)
Q Consensus 96 ~~~s~nG-Ll~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~v 174 (366)
.++.++- .+|.++...-+|+||-.|.+...+-++-... .. .... |-.-|. +.|-++. +..-.+.+
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~----~~e~--FeVShd-~~fia~~------G~~G~I~l 329 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EK----SMER--FEVSHD-SNFIAIA------GNNGHIHL 329 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cc----hhhe--eEecCC-CCeEEEc------ccCceEEe
Confidence 3344443 5677777778999999999988876654332 11 2222 222222 2244443 34455666
Q ss_pred EEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEE-EEC
Q 017755 175 YSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVG-VLR 253 (366)
Q Consensus 175 yss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~-~~~ 253 (366)
.+..|+.|-.--.++-..... ...-+|+.-|+.+... .|.++|+........=.=.+.. ....++ ..+
T Consensus 330 LhakT~eli~s~KieG~v~~~---~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~n 398 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGVVSDF---TFSSDSKELLASGGTG------EVYVWNLRQNSCLHRFVDDGSV--HGTSLCISLN 398 (514)
T ss_pred ehhhhhhhhheeeeccEEeeE---EEecCCcEEEEEcCCc------eEEEEecCCcceEEEEeecCcc--ceeeeeecCC
Confidence 677777774322222111110 1234667777765542 7999999987443221111111 122233 345
Q ss_pred CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE
Q 017755 254 GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ 315 (366)
Q Consensus 254 G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~ 315 (366)
|. +++++.... .+.|+-.+..-....=.-+..+..... ....+.|.++++++-++.
T Consensus 399 g~-ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt----~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 399 GS-YLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTT----AITSLQFNHDAQILAIAS 454 (514)
T ss_pred Cc-eEEeccCcc-eEEEeccchhhccCCCCchhhhhhhhe----eeeeeeeCcchhhhhhhh
Confidence 66 444443332 688887765311110001122221111 456678888887554544
No 108
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.13 E-value=1.5e+02 Score=27.26 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=66.8
Q ss_pred ceEEC--CeEEEEEeeCCCCCCcceEEEEECCCceeEEE---CCCCCC--CCCee---eEEEEE---CCEEEEEEecC--
Q 017755 199 GVFIA--GALHWLAARGSVRTGQNMILAFDLKSEKFYEV---QQPHGM--KGGFC---SQVGVL---RGCLWINSYYH-- 263 (366)
Q Consensus 199 ~v~~~--G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~--~~~~~---~~l~~~---~G~L~~v~~~~-- 263 (366)
+++.+ |.+||+...+ .|...|+..+.-... ++-... .+++. ..+..+ .|+|++.....
T Consensus 189 ~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp -EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred cceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 55544 5788887775 788999987754332 221111 11221 133333 47998765532
Q ss_pred ---CCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE--cCCeEEEEECCCCcEEE
Q 017755 264 ---DEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ--HSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 264 ---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~--~~~~l~~ydl~t~~~~~ 332 (366)
....-+||+++-. +=.++.+|++.. ....+++.++.+=.++.. .+..+.+||..|++...
T Consensus 262 gsHKdpgteVWv~D~~----t~krv~Ri~l~~-----~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLK----THKRVARIPLEH-----PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp T-TTS-EEEEEEEETT----TTEEEEEEEEEE-----EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCccCCceEEEEEECC----CCeEEEEEeCCC-----ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1236799999963 234567776543 233577787777566543 34569999999997543
No 109
>PRK04043 tolB translocation protein TolB; Provisional
Probab=58.65 E-value=1.7e+02 Score=27.82 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=60.7
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCccee
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYT 299 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (366)
.|..+|+.+.+-+.+-...+.. ..... .-+| +|.+...... .-+||.++-.+ ..+.++-.... . .
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~--~~~~~-SPDG~~la~~~~~~g--~~~Iy~~dl~~--g~~~~LT~~~~--~-----d 279 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML--VVSDV-SKDGSKLLLTMAPKG--QPDIYLYDTNT--KTLTQITNYPG--I-----D 279 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE--EeeEE-CCCCCEEEEEEccCC--CcEEEEEECCC--CcEEEcccCCC--c-----c
Confidence 7999999988777663222210 11122 2245 5655544333 57899998532 34554322111 1 1
Q ss_pred EEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEEEEec
Q 017755 300 EAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVIEIRN 337 (366)
Q Consensus 300 ~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v~~~~ 337 (366)
....+.+||+.|++..... .++.+|+++++.+++-..|
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 1235778998888876432 5999999999998774433
No 110
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=57.40 E-value=1.6e+02 Score=27.22 Aligned_cols=212 Identities=13% Similarity=0.022 Sum_probs=103.5
Q ss_pred EEecccceEEeee----------cCceEEEEcCCCcceE-ecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEe
Q 017755 96 VIGCCHGLLAMFN----------RRLGMSVFNPTTKKFK-LFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQS 164 (366)
Q Consensus 96 ~~~s~nGLl~~~~----------~~~~~~V~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~ 164 (366)
+++..+..+-+++ +...+-|+++.|.+.. +||.++.+. ... ......+++.|. +++-.|. ..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~--~~~--~~~~~~~~ls~d-gk~l~V~--n~ 124 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR--FLV--GTYPWMTSLTPD-NKTLLFY--QF 124 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch--hhc--cCccceEEECCC-CCEEEEe--cC
Confidence 4555555554432 3557889999999864 455443311 000 112234555543 2222222 11
Q ss_pred cccceeEEEEEEcCCCcEEe-cCCCCcee---ec-CCC-CceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCC
Q 017755 165 YKVDYLEVIIYSLKADTWRR-TREFPYYI---LD-DRC-NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQP 238 (366)
Q Consensus 165 ~~~~~~~~~vyss~~~~W~~-~~~~p~~~---~~-~~~-~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P 238 (366)
.....+.|.+..+++=-. ++ .|-+. .. ... ...+.+|.+.-+.....+.........||..+. -.+.-|
T Consensus 125 --~p~~~V~VvD~~~~kvv~ei~-vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~--~v~~rP 199 (352)
T TIGR02658 125 --SPSPAVGVVDLEGKAFVRMMD-VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE--YLINHP 199 (352)
T ss_pred --CCCCEEEEEECCCCcEEEEEe-CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc--ccccCC
Confidence 234566777776654322 32 12111 11 111 134667777776655543222223334443211 111223
Q ss_pred CCCC-CCeeeEEEEECCEEEEEEecCC-CCeEEEEEEeecCC-CCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE
Q 017755 239 HGMK-GGFCSQVGVLRGCLWINSYYHD-EPRCDIWVMKEYGS-QQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ 315 (366)
Q Consensus 239 ~~~~-~~~~~~l~~~~G~L~~v~~~~~-~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~ 315 (366)
.... ++ .......+|.++++..... ......|.+...+. ++.|. ++ ...+++++++|+.+|+..
T Consensus 200 ~~~~~dg-~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr----------P~--g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR----------PG--GWQQVAYHRARDRIYLLA 266 (352)
T ss_pred ceEcCCC-cEEEEecCCeEEEEecCCCcceecceeeeccccccccccC----------CC--cceeEEEcCCCCEEEEEe
Confidence 1111 22 3444555688888886432 22345555433221 22332 11 356689999998888843
Q ss_pred c----------CCeEEEEECCCCcEEE
Q 017755 316 H----------SRCLHWYNLKDHKQDV 332 (366)
Q Consensus 316 ~----------~~~l~~ydl~t~~~~~ 332 (366)
+ ..++.++|.+|++...
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEE
Confidence 1 1369999999988644
No 111
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.21 E-value=28 Score=24.90 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.3
Q ss_pred CeEEEEECCCCcEEEE
Q 017755 318 RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 318 ~~l~~ydl~t~~~~~v 333 (366)
++++.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 3599999999999888
No 112
>PRK00178 tolB translocation protein TolB; Provisional
Probab=56.69 E-value=1.8e+02 Score=27.50 Aligned_cols=189 Identities=12% Similarity=0.053 Sum_probs=97.0
Q ss_pred CceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
...++++|..+++...+....... . ...+.|. ++ +++..... .....+.+++..++..+.+..-+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~-------~----~~~~SpD-G~-~la~~~~~--~g~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN-------G----APAWSPD-GS-KLAFVLSK--DGNPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc-------C----CeEECCC-CC-EEEEEEcc--CCCceEEEEECCCCCeEEcccCC
Confidence 347899999999887775443211 0 1333443 22 22222211 23356778888888887765322
Q ss_pred ceeecCCCCceEECC-eEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 190 YYILDDRCNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
... ......-+| .+++...... ...|..+|+.+.+.+.+....... ....+...++.|++...... ..
T Consensus 287 ~~~---~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~~--~~~~~Spdg~~i~~~~~~~~--~~ 355 (430)
T PRK00178 287 AID---TEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNYN--ARPRLSADGKTLVMVHRQDG--NF 355 (430)
T ss_pred CCc---CCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccCC--ce
Confidence 110 001122245 4555543322 136888898887776654322110 11222222345555544333 56
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---CeEEEEECCCCcEEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~ydl~t~~~~~v~ 334 (366)
.||.++-.. .....+ ..... ...| .+.++|+.+++.... ..++..+++.+..+.+.
T Consensus 356 ~l~~~dl~t--g~~~~l---t~~~~----~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 356 HVAAQDLQR--GSVRIL---TDTSL----DESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEEEECCC--CCEEEc---cCCCC----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 788877432 233322 21111 1223 577899888777643 24888888766665554
No 113
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=56.38 E-value=71 Score=23.52 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=35.9
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEE
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYS 176 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vys 176 (366)
-+++..+|.+++|...- . ......+..|+..+.|.++........-.+.+++|.
T Consensus 9 a~v~~~~~~~~~W~~~~-----~-------~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~ 62 (104)
T cd00837 9 AQVYTADPSTGKWVPAS-----G-------GTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK 62 (104)
T ss_pred EEEEEECCCCCceEECC-----C-------CeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC
Confidence 47889999999998742 1 334667888988888888877543322334445443
No 114
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=55.04 E-value=1.5e+02 Score=26.85 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=49.8
Q ss_pred cEEecCCCCc-------eeecCCCCceEE-CCeEEEEEeeCCCCCC-cceEEEEECC-CceeEEE-CC-CCCCCCCeeeE
Q 017755 181 TWRRTREFPY-------YILDDRCNGVFI-AGALHWLAARGSVRTG-QNMILAFDLK-SEKFYEV-QQ-PHGMKGGFCSQ 248 (366)
Q Consensus 181 ~W~~~~~~p~-------~~~~~~~~~v~~-~G~lyw~~~~~~~~~~-~~~i~~fD~~-~e~~~~i-~~-P~~~~~~~~~~ 248 (366)
.|.....++. .+.....++|.. +|.|-+-..-...... ...++.|-.. .++|..- -. |..+ ....
T Consensus 101 ~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC---~~ps 177 (310)
T PF13859_consen 101 KWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC---SDPS 177 (310)
T ss_dssp EE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT----EEEE
T ss_pred eeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCc---ceEE
Confidence 5876654432 122233346655 8888886654332223 3577777776 6788764 22 3333 5789
Q ss_pred EEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeE
Q 017755 249 VGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSK 284 (366)
Q Consensus 249 l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~ 284 (366)
+.|. +|+|.|+..+... .-+++.=. ++..+|+.
T Consensus 178 v~EWe~gkLlM~~~c~~g-~rrVYeS~--DmG~tWte 211 (310)
T PF13859_consen 178 VVEWEDGKLLMMTACDDG-RRRVYESG--DMGTTWTE 211 (310)
T ss_dssp EEEE-TTEEEEEEE-TTS----EEEES--STTSS-EE
T ss_pred EEeccCCeeEEEEecccc-eEEEEEEc--ccceehhh
Confidence 9999 7999999887764 34555444 46788986
No 115
>PRK04792 tolB translocation protein TolB; Provisional
Probab=54.89 E-value=2e+02 Score=27.53 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=74.1
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCS 247 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 247 (366)
...+.+++..++.-+.+...+... ......-+|+ +++....+. ...|..+|+.+.+.+.+.-..... ...
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~---~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~--~~p 311 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN---GAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID--TEP 311 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc---CCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc--cce
Confidence 345566666666555544332110 0112233554 544443322 246888999988876653211111 111
Q ss_pred EEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---CeEEEE
Q 017755 248 QVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---RCLHWY 323 (366)
Q Consensus 248 ~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~y 323 (366)
... -+| .|++...... ..+||.++-.+ .++.++- ... ..... ..+.++|+.+++.... ..++.+
T Consensus 312 ~wS-pDG~~I~f~s~~~g--~~~Iy~~dl~~--g~~~~Lt---~~g---~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 312 SWH-PDGKSLIFTSERGG--KPQIYRVNLAS--GKVSRLT---FEG---EQNLG-GSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred EEC-CCCCEEEEEECCCC--CceEEEEECCC--CCEEEEe---cCC---CCCcC-eeECCCCCEEEEEEecCCceEEEEE
Confidence 121 244 4554443222 57899888532 4454432 111 11112 3567899888776543 248899
Q ss_pred ECCCCcEEEE
Q 017755 324 NLKDHKQDVI 333 (366)
Q Consensus 324 dl~t~~~~~v 333 (366)
|+++++.+.+
T Consensus 380 dl~~g~~~~l 389 (448)
T PRK04792 380 DLETGAMQVL 389 (448)
T ss_pred ECCCCCeEEc
Confidence 9999988766
No 116
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.21 E-value=2.3e+02 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=25.0
Q ss_pred EEEecccceEEeeecCceEEEEcCCCcceEe
Q 017755 95 SVIGCCHGLLAMFNRRLGMSVFNPTTKKFKL 125 (366)
Q Consensus 95 ~~~~s~nGLl~~~~~~~~~~V~NP~t~~~~~ 125 (366)
.-+..+||||++.+..+.+-.|+|.+|....
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhhe
Confidence 3446789999988778899999999988643
No 117
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=53.97 E-value=43 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=28.6
Q ss_pred ceEEEEcCCCcc-eEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEE
Q 017755 111 LGMSVFNPTTKK-FKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRII 162 (366)
Q Consensus 111 ~~~~V~NP~t~~-~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 162 (366)
-+++..||.+++ |... . ....+.+..|...+.|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~------~-------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV------K-------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES------S-------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC------C-------eEEEEEEEEECCCCEEEEEEEE
Confidence 468889999888 8876 1 2345567788887888887764
No 118
>PRK04922 tolB translocation protein TolB; Provisional
Probab=53.49 E-value=2e+02 Score=27.23 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=76.8
Q ss_pred ceeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCee
Q 017755 168 DYLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFC 246 (366)
Q Consensus 168 ~~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~ 246 (366)
....+.+++..++.-+.+...+... ......-+|. +++...... ...|..+|+.+.+.+.+.--... . ..
T Consensus 226 ~~~~l~~~dl~~g~~~~l~~~~g~~---~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~-~~ 296 (433)
T PRK04922 226 GRSAIYVQDLATGQRELVASFRGIN---GAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-D-TE 296 (433)
T ss_pred CCcEEEEEECCCCCEEEeccCCCCc---cCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-c-cc
Confidence 3456777888888776665433111 1112333563 555443332 13688899988776554211111 1 12
Q ss_pred eEEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC---eEEE
Q 017755 247 SQVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR---CLHW 322 (366)
Q Consensus 247 ~~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~ 322 (366)
..... +| +|.+...... ..+||.++-.+ .+..++ .... . ......+.++|+.|++...+. .+..
T Consensus 297 ~~~sp-DG~~l~f~sd~~g--~~~iy~~dl~~--g~~~~l---t~~g---~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 297 PTWAP-DGKSIYFTSDRGG--RPQIYRVAASG--GSAERL---TFQG---N-YNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred eEECC-CCCEEEEEECCCC--CceEEEEECCC--CCeEEe---ecCC---C-CccCEEECCCCCEEEEEECCCCceeEEE
Confidence 22222 34 4554443322 46888887432 334332 2111 1 122357788998887765332 4999
Q ss_pred EECCCCcEEEE
Q 017755 323 YNLKDHKQDVI 333 (366)
Q Consensus 323 ydl~t~~~~~v 333 (366)
+|+++++.+.+
T Consensus 365 ~d~~~g~~~~L 375 (433)
T PRK04922 365 MDLSTGSVRTL 375 (433)
T ss_pred EECCCCCeEEC
Confidence 99999988765
No 119
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.91 E-value=2.8e+02 Score=28.33 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=68.1
Q ss_pred CceEECCeEEEEEeeCCCC-----CCcceEEEEECCCceeEEECCCCCCCCC------eeeEEEEE---CCEEEEEEecC
Q 017755 198 NGVFIAGALHWLAARGSVR-----TGQNMILAFDLKSEKFYEVQQPHGMKGG------FCSQVGVL---RGCLWINSYYH 263 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~-----~~~~~i~~fD~~~e~~~~i~~P~~~~~~------~~~~l~~~---~G~L~~v~~~~ 263 (366)
+.++..++.||+....... .....+++.+..++.|....+|.-..-+ ....-+.. ++-|.+-+..
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k- 328 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK- 328 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc-
Confidence 4578888888887543110 1225899999999999999999765100 01111111 2334433332
Q ss_pred CCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 264 DEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 264 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
.+.+-||..+. ++.+.+. +.... ...-+...+||..|.-...++++-+||...+..
T Consensus 329 -lgQLlVweWqs----EsYVlKQ----QgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 329 -LGQLLVWEWQS----ESYVLKQ----QGHSD--RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred -cceEEEEEeec----cceeeec----ccccc--ceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 23688888874 3344333 22110 244466677877444444556677888776554
No 120
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=1.8e+02 Score=26.02 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=58.6
Q ss_pred eEEEEECC---CceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc
Q 017755 221 MILAFDLK---SEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY 297 (366)
Q Consensus 221 ~i~~fD~~---~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 297 (366)
.|--||+. .+-|+.+.++...+..+..--..-+|+..+++.... .+..++.+.. . .++.+...+-.+.
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s----~~~~lDAf~G--~--~~~tfs~~~~~~~- 233 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS----FIYLLDAFDG--T--VKSTFSGYPNAGN- 233 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC----cEEEEEccCC--c--EeeeEeeccCCCC-
Confidence 67778876 345676666543322222112222577777776543 3344454432 1 4444443332111
Q ss_pred eeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 298 YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 298 ~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
...-..+.|+|+.|+-...++.+.+||++|+.---+
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 234467789999666666667899999988874433
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.52 E-value=38 Score=34.03 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=43.4
Q ss_pred CeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 266 PRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 266 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
.+++||-+.+... -.|.-+.. ....+++.|+|+..++.+..+...+|+.+..++..-
T Consensus 432 ~KvRiWsI~d~~V-v~W~Dl~~----------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 432 GKVRLWSISDKKV-VDWNDLRD----------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred cceEEeecCcCee-Eeehhhhh----------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 3789999887543 44765552 266788999999899988888899999998887544
No 122
>PRK05137 tolB translocation protein TolB; Provisional
Probab=49.62 E-value=2.4e+02 Score=26.81 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=93.6
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCc
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPY 190 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~ 190 (366)
.+++++|.-++..+.+...... .....+.|.. + +++.+... .....+.++++.++..+.+...+.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~-----------v~~p~wSpDG-~-~lay~s~~--~g~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSL-----------VLTPRFSPNR-Q-EITYMSYA--NGRPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCC-----------eEeeEECCCC-C-EEEEEEec--CCCCEEEEEECCCCcEEEeecCCC
Confidence 3677888766655554332111 1123344432 2 33333321 234678888998888877654332
Q ss_pred eeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 191 YILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 191 ~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
... .....-+|+ +.+....+. ...|..+|+.+.+.+.+ ..+... ......-.+.+|.+...... ..
T Consensus 247 ~~~---~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~---~~~~~spDG~~i~f~s~~~g--~~ 314 (435)
T PRK05137 247 MTF---APRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID---TSPSYSPDGSQIVFESDRSG--SP 314 (435)
T ss_pred ccc---CcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc---CceeEcCCCCEEEEEECCCC--CC
Confidence 111 112333564 444433322 14688889988776654 222111 11122222234555443333 46
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---CeEEEEECCCCcEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~ydl~t~~~~~v 333 (366)
+||+++-.+ .+..+ +.... + ......+.++|+.|++...+ ..+..+|++++..+.+
T Consensus 315 ~Iy~~d~~g--~~~~~---lt~~~--~--~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 315 QLYVMNADG--SNPRR---ISFGG--G--RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred eEEEEECCC--CCeEE---eecCC--C--cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 788887432 22222 22111 0 12224567889887776532 2599999988776555
No 123
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=48.31 E-value=1.9e+02 Score=27.36 Aligned_cols=128 Identities=22% Similarity=0.181 Sum_probs=67.5
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCc
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPY 190 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~ 190 (366)
.+++|+|..|++..+|....... .......-..+.=||--.++.+|++-... ..+.++ |.+.+ |
T Consensus 253 ~RylVfN~~t~~V~R~Daig~ac-v~LPedqGiIFpgGYyLqtGe~K~Fd~~~----~~l~F~---------r~vrS-P- 316 (448)
T PF12458_consen 253 WRYLVFNTRTKKVVRLDAIGQAC-VRLPEDQGIIFPGGYYLQTGEYKTFDTDM----DGLEFE---------RKVRS-P- 316 (448)
T ss_pred eeEEEEecccceEEEecchhhhh-hcCCccCceEccCceEeccCCceeecccC----CCceEE---------EEecC-C-
Confidence 37999999999999887654322 10000011233334444566666664321 011111 11111 1
Q ss_pred eeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecC-C---CC
Q 017755 191 YILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYH-D---EP 266 (366)
Q Consensus 191 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~-~---~~ 266 (366)
--...+|..-....+ ...++.||+-..+. ..|-.+ +..-.--+|+|++..... . ..
T Consensus 317 ----------NGEDvLYvF~~~~~g---~~~Ll~YN~I~k~v---~tPi~c----hG~alf~DG~l~~fra~~~EptrvH 376 (448)
T PF12458_consen 317 ----------NGEDVLYVFYAREEG---RYLLLPYNLIRKEV---ATPIIC----HGYALFEDGRLVYFRAEGDEPTRVH 376 (448)
T ss_pred ----------CCceEEEEEEECCCC---cEEEEechhhhhhh---cCCeec----cceeEecCCEEEEEecCCCCcceec
Confidence 112267766655433 36889999887665 445443 223333478998887752 2 12
Q ss_pred eEEEEEEe
Q 017755 267 RCDIWVMK 274 (366)
Q Consensus 267 ~l~iW~l~ 274 (366)
-++||+-.
T Consensus 377 p~QiWqTP 384 (448)
T PF12458_consen 377 PMQIWQTP 384 (448)
T ss_pred cceeecCC
Confidence 47888865
No 124
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=47.56 E-value=1.1e+02 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=23.1
Q ss_pred EEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 302 FAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 302 ~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
-.+.++|+.++-...++.+..||++|+.-
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCce
Confidence 34567899777777777899999999973
No 125
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=46.82 E-value=1.7e+02 Score=25.66 Aligned_cols=62 Identities=8% Similarity=0.076 Sum_probs=39.1
Q ss_pred EECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecC
Q 017755 201 FIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYH 263 (366)
Q Consensus 201 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~ 263 (366)
+.+|+||..+..-.....-..+..-+...+.|+.+..|...+. ...-++..++.|++.....
T Consensus 198 yY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHh-tnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 198 YYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHH-TNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp EETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---S-S---EEEETTEEEEEEE-S
T ss_pred hhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccc-cCCCceeeCCEEEEEeccc
Confidence 8899999988764332212367777888899999999987765 3777888899999988753
No 126
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.50 E-value=3.4e+02 Score=27.69 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=62.5
Q ss_pred cccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcC
Q 017755 99 CCHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLK 178 (366)
Q Consensus 99 s~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~ 178 (366)
|-|++|+-+..+..+-+|+|-++++...=.-+ .++ -...|.|..++|-+=+- -..++.+.+.-
T Consensus 378 SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn----------dfV-TcVaFnPvDDryFiSGS------LD~KvRiWsI~ 440 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN----------DFV-TCVAFNPVDDRYFISGS------LDGKVRLWSIS 440 (712)
T ss_pred ccCCeeEeccccccEEeecCCCcceeeEEecC----------Cee-EEEEecccCCCcEeecc------cccceEEeecC
Confidence 67999998888889999999999987753221 232 25688999888876552 23456666765
Q ss_pred CC---cEEecCCCCceeecCC--CCce--EECCeEEEEEeeC
Q 017755 179 AD---TWRRTREFPYYILDDR--CNGV--FIAGALHWLAARG 213 (366)
Q Consensus 179 ~~---~W~~~~~~p~~~~~~~--~~~v--~~~G~lyw~~~~~ 213 (366)
+. -|..+..+-....+.+ ..+| .++|.+++....+
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 54 5877775543332221 1222 4566666655544
No 127
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=46.43 E-value=2.8e+02 Score=26.85 Aligned_cols=127 Identities=7% Similarity=0.017 Sum_probs=60.9
Q ss_pred eEEC-CeEEEEEeeCCCCCCcceEEEEECCCc--eeEEECCCCCCCC-CeeeEEEEECCEEEEEEecCC----CCeEEEE
Q 017755 200 VFIA-GALHWLAARGSVRTGQNMILAFDLKSE--KFYEVQQPHGMKG-GFCSQVGVLRGCLWINSYYHD----EPRCDIW 271 (366)
Q Consensus 200 v~~~-G~lyw~~~~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~~-~~~~~l~~~~G~L~~v~~~~~----~~~l~iW 271 (366)
++.+ |.+|.-...+ .+.++|.++. .|+.-..+..... .........+|.+++...... ...=.++
T Consensus 106 ~~~~~~~V~v~~~~g-------~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 106 AYWDPRKVFFGTFDG-------RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALR 178 (488)
T ss_pred EEccCCeEEEecCCC-------eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEE
Confidence 4446 7888755443 7999999854 4554322221000 001122334455554322110 0012456
Q ss_pred EEeecCCCCCeeEEEEecCC-CCC------------CcceeEEEEEEeCCCeEEEEEcCC------------------eE
Q 017755 272 VMKEYGSQQSWSKLCSFSKM-LHE------------TCYYTEAFAFSKDGDKALIYQHSR------------------CL 320 (366)
Q Consensus 272 ~l~~~~~~~~W~~~~~i~~~-~~~------------~~~~~~~~~~~~~g~~i~l~~~~~------------------~l 320 (366)
.++....+..|.....-... ..+ +.....+..+...++.|++...+. .+
T Consensus 179 alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l 258 (488)
T cd00216 179 AYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSI 258 (488)
T ss_pred EEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeE
Confidence 66654335567543211100 000 000122344454566677775332 59
Q ss_pred EEEECCCCcEEEE
Q 017755 321 HWYNLKDHKQDVI 333 (366)
Q Consensus 321 ~~ydl~t~~~~~v 333 (366)
+.+|.+|++...-
T Consensus 259 ~Ald~~tG~~~W~ 271 (488)
T cd00216 259 VALDADTGKVKWF 271 (488)
T ss_pred EEEcCCCCCEEEE
Confidence 9999999997665
No 128
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.28 E-value=85 Score=28.77 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEec-CCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEE
Q 017755 254 GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFS-KMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 254 G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~ 332 (366)
|..+....... .+.+|.+.-. .-+.++. ... ...-++|.+.|+.|+=+..+..+-+||+++++...
T Consensus 304 ~~~l~s~SrDk--tIk~wdv~tg------~cL~tL~ghdn-----wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 304 GQVLGSGSRDK--TIKIWDVSTG------MCLFTLVGHDN-----WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ccEEEeecccc--eEEEEeccCC------eEEEEEecccc-----eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 34444444333 6888887742 0122221 111 46668889999866666667779999999998665
Q ss_pred E
Q 017755 333 I 333 (366)
Q Consensus 333 v 333 (366)
.
T Consensus 371 ~ 371 (406)
T KOG0295|consen 371 T 371 (406)
T ss_pred c
Confidence 5
No 129
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=46.17 E-value=4.2e+02 Score=28.76 Aligned_cols=222 Identities=10% Similarity=-0.016 Sum_probs=104.9
Q ss_pred EEEecccceEEeee-cCceEEEEcCCCcceEecCCCCCCCccCCC---CCCeeEeEEeecCCCCCeeEEEEEEeccccee
Q 017755 95 SVIGCCHGLLAMFN-RRLGMSVFNPTTKKFKLFPQFWSDCYTDYM---TNNFHFDGFGYDASTDDYKLVRIIQSYKVDYL 170 (366)
Q Consensus 95 ~~~~s~nGLl~~~~-~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~---~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 170 (366)
..+++.+|.+.+++ ..+++.++++..+....+..........+. .......++.+|+..+...|. . ....
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa---D---t~n~ 646 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA---D---TENH 646 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE---e---CCCc
Confidence 35566788776665 466889999876655555442111000000 001234567777653322111 1 1223
Q ss_pred EEEEEEcCCCcEEecCCC-------Cce-----eecCCCCceEE---CCeEEEEEeeCCCCCCcceEEEEECCCceeEEE
Q 017755 171 EVIIYSLKADTWRRTREF-------PYY-----ILDDRCNGVFI---AGALHWLAARGSVRTGQNMILAFDLKSEKFYEV 235 (366)
Q Consensus 171 ~~~vyss~~~~W~~~~~~-------p~~-----~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i 235 (366)
.+.+++..++.=+.+..- ..+ .......++.+ +|.+|...... ..|..+|..+.....+
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVTRVF 720 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeEEEE
Confidence 455555554433222110 000 00111123443 57788765544 4788899887766544
Q ss_pred CCCCCC---CC--------CeeeEEEEE-CC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEE---------EEecCCCC
Q 017755 236 QQPHGM---KG--------GFCSQVGVL-RG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKL---------CSFSKMLH 293 (366)
Q Consensus 236 ~~P~~~---~~--------~~~~~l~~~-~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~---------~~i~~~~~ 293 (366)
...... .. ..-..++.. +| .|+++..... .+.+|-++..+ ..+..- ..+....-
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~--~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS--SIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC--eEEEEECCCCc--EEEEEecccccCcccccccCCCC
Confidence 211000 00 001123333 34 5887766443 67777766421 112100 00000000
Q ss_pred CC----cceeEEEEEEeCCCeEEEEEc-CCeEEEEECCCCcEEEE
Q 017755 294 ET----CYYTEAFAFSKDGDKALIYQH-SRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 294 ~~----~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~t~~~~~v 333 (366)
.+ .....-+++.++|+ +|+... ...+..||++++++..+
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred chhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence 00 00123356677888 777654 44699999999988766
No 130
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.61 E-value=3.5e+02 Score=27.67 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=73.6
Q ss_pred ceEEC--CeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEee
Q 017755 199 GVFIA--GALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 199 ~v~~~--G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~ 275 (366)
.|.++ |-+-..+..+. +.|.+-+++|++.-.+ ....+. ...-...-.|.+.+-..+.. ++++|-+=+
T Consensus 440 cvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLsGHEgP---Vs~l~f~~~~~~LaS~SWDk--TVRiW~if~ 509 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILSGHEGP---VSGLSFSPDGSLLASGSWDK--TVRIWDIFS 509 (893)
T ss_pred EEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhcCCCCc---ceeeEEccccCeEEeccccc--eEEEEEeec
Confidence 46666 88888777664 6899999999987555 433332 12122233455433333344 799998864
Q ss_pred cCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 276 YGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
+|..+..+.... ...-+.+.|+|+-|-+.+-++.+-.||.+.+.-
T Consensus 510 -----s~~~vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 510 -----SSGTVETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred -----cCceeeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 355666665544 255578888998888888887899999876653
No 131
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.39 E-value=55 Score=29.95 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=35.6
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCC
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSV 215 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~ 215 (366)
...-+||-...++|+.+..+|..+.... ++..++.+|-++.+...
T Consensus 317 ~w~~~Vy~~d~g~Wk~~GeLp~~l~YG~--s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 317 SWNSEVYIFDNGSWKIVGELPQGLAYGV--SLSYNNKVLLIGGETSG 361 (381)
T ss_pred hhhceEEEEcCCceeeecccCCCccceE--EEecCCcEEEEccccCC
Confidence 3567888888999999999998655433 67889999999987654
No 132
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=44.38 E-value=2.4e+02 Score=25.35 Aligned_cols=99 Identities=9% Similarity=0.140 Sum_probs=56.6
Q ss_pred ceEEEEECCCceeEE-ECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcce
Q 017755 220 NMILAFDLKSEKFYE-VQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYY 298 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 298 (366)
..+..+|.++++-.. ...-... .-.+...+--+-+++.......+.+|-+...+.-+.-+.++ .
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-----------q 176 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-----------Q 176 (338)
T ss_pred ceEEEEecccceeeehhccccce----eeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-----------e
Confidence 489999999987643 2332222 22223344344555554555589999887532211111111 3
Q ss_pred eEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 299 TEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
...+++.++++-++-..-+..+-+||++.+....+
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred EEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 44566666666566665565688888877776665
No 133
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.31 E-value=2.6e+02 Score=25.79 Aligned_cols=100 Identities=6% Similarity=0.087 Sum_probs=51.3
Q ss_pred ceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCccee
Q 017755 220 NMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYT 299 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (366)
+....+|..+..| ...++.+-+. ....-...+|.| +++..... .+.||..... ...|...+.+....+
T Consensus 86 D~AflW~~~~ge~-~~eltgHKDS-Vt~~~Fshdgtl-LATGdmsG-~v~v~~~stg--~~~~~~~~e~~dieW------ 153 (399)
T KOG0296|consen 86 DLAFLWDISTGEF-AGELTGHKDS-VTCCSFSHDGTL-LATGDMSG-KVLVFKVSTG--GEQWKLDQEVEDIEW------ 153 (399)
T ss_pred ceEEEEEccCCcc-eeEecCCCCc-eEEEEEccCceE-EEecCCCc-cEEEEEcccC--ceEEEeecccCceEE------
Confidence 4777888888773 2344444322 122222233443 33332222 6778877652 355765544443222
Q ss_pred EEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 300 EAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 300 ~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
+..++-+.+++....++.+.+|.+..+...++
T Consensus 154 --l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 154 --LKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred --EEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 33344455333344556688888877644444
No 134
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.10 E-value=2.7e+02 Score=27.24 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=59.4
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeE
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTE 300 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 300 (366)
.|+.+++...+.+...--. .+++ .........++..+........++.|..++.-..-.|.. . .. ...
T Consensus 81 ~v~~ys~~~g~it~~~st~-~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~----~-~~-----~~~ 148 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTD-KHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE----Q-KP-----LVS 148 (541)
T ss_pred cEEEEEecCCeEEEEEecC-CCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeecc----C-CC-----ccc
Confidence 7888888877665432211 1111 122222344444444444444688888876321112221 0 01 245
Q ss_pred EEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEEEecCCCceeeeeeeecc
Q 017755 301 AFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNENQSFWDAFICMGS 351 (366)
Q Consensus 301 ~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~~~~~~~~~~~~~y~~s 351 (366)
-+++.+||+ +++.... .+..||.+|++.-.- +.|+ ..--+...|+.+
T Consensus 149 sl~is~D~~-~l~~as~-~ik~~~~~~kevv~~-ftgh-~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 149 SLCISPDGK-ILLTASR-QIKVLDIETKEVVIT-FTGH-GSPVRTLSFTTL 195 (541)
T ss_pred eEEEcCCCC-EEEeccc-eEEEEEccCceEEEE-ecCC-CcceEEEEEEEe
Confidence 578888887 5554434 499999999874222 3444 333444455544
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=44.06 E-value=2.9e+02 Score=26.24 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=76.2
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECC-eEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCS 247 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 247 (366)
...+.+++..++.-+.+...+.... .....-+| .+++...... ...|..+|+.+.+.+.+.-.... . ...
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~---~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~-~-~~~ 292 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNG---APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN-N-TEP 292 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcC---CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC-c-Cce
Confidence 4567777887776666554332110 01223355 4666544322 13688899988777655221111 1 112
Q ss_pred EEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---CeEEEE
Q 017755 248 QVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---RCLHWY 323 (366)
Q Consensus 248 ~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~y 323 (366)
.... +| +|.++..... ..+||.++-.+ ..-. ++....- ......+.++|+.|++.... ..++.+
T Consensus 293 ~wSP-DG~~I~f~s~~~g--~~~Iy~~d~~~--g~~~---~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 293 TWFP-DSQNLAYTSDQAG--RPQVYKVNING--GAPQ---RITWEGS----QNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred EECC-CCCEEEEEeCCCC--CceEEEEECCC--CCeE---EeecCCC----CccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 2222 34 4555544333 56899887532 2222 2221110 12235677889877776533 248999
Q ss_pred ECCCCcEEEEE
Q 017755 324 NLKDHKQDVIE 334 (366)
Q Consensus 324 dl~t~~~~~v~ 334 (366)
|+++++.+.+.
T Consensus 361 dl~~g~~~~Lt 371 (429)
T PRK03629 361 DLATGGVQVLT 371 (429)
T ss_pred ECCCCCeEEeC
Confidence 99999888763
No 136
>PTZ00421 coronin; Provisional
Probab=43.82 E-value=3.2e+02 Score=26.66 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=34.7
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
.+.||-++.. ..+..+....- ...-+.+.++|..++....++.+.+||+++++.
T Consensus 149 tVrIWDl~tg------~~~~~l~~h~~----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 149 VVNVWDVERG------KAVEVIKCHSD----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEEEECCCC------eEEEEEcCCCC----ceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 7999988742 12333321110 245577788888555556677799999998874
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=43.09 E-value=2.5e+02 Score=25.25 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEE--EEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcce
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCL--WINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYY 298 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L--~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 298 (366)
.+-.+|+.+.|-+.+.+..+. ...+--.+|-+ |++++.-+. ++..|-+...- .+.++.++.-
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~p----vkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~~------pv~t~~LPeR----- 158 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAP----VKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSSN------PVATLQLPER----- 158 (347)
T ss_pred ceEEEEccCCCeeeeeecccc----eeEEEEecCCCcceeEeccccc-ceeecccCCCC------eeeeeeccce-----
Confidence 688899999998888665544 33344445555 778776554 79999887531 3555654432
Q ss_pred eEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 299 TEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
..+..-.-.+.++...++++.+|||+....
T Consensus 159 --vYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 159 --VYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred --eeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 112222223344555556688888866554
No 138
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=43.05 E-value=2.5e+02 Score=25.24 Aligned_cols=121 Identities=10% Similarity=0.155 Sum_probs=62.1
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEECCC-ceeEE-----ECCCCCCCCCeeeEEEEECCE-EEEEEecCCCCeEEEEEEee
Q 017755 203 AGALHWLAARGSVRTGQNMILAFDLKS-EKFYE-----VQQPHGMKGGFCSQVGVLRGC-LWINSYYHDEPRCDIWVMKE 275 (366)
Q Consensus 203 ~G~lyw~~~~~~~~~~~~~i~~fD~~~-e~~~~-----i~~P~~~~~~~~~~l~~~~G~-L~~v~~~~~~~~l~iW~l~~ 275 (366)
+|+.-++..... ..|.+||+.+ ..... +..|.+... ....+. -+|+ |+++.... +.+.+|.++.
T Consensus 136 ~g~~l~v~~~~~-----~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~-pdg~~lyv~~~~~--~~v~v~~~~~ 206 (330)
T PRK11028 136 DNRTLWVPCLKE-----DRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFH-PNQQYAYCVNELN--SSVDVWQLKD 206 (330)
T ss_pred CCCEEEEeeCCC-----CEEEEEEECCCCcccccCCCceecCCCCCC-ceEEEC-CCCCEEEEEecCC--CEEEEEEEeC
Confidence 566666665543 4899999876 33321 222322211 122222 2344 55554323 3899999985
Q ss_pred cCCCCCeeEEEEecCCC--CCCcceeEEEEEEeCCCeEEEEEc-CCeEEEEECC--CCcEEEEE
Q 017755 276 YGSQQSWSKLCSFSKML--HETCYYTEAFAFSKDGDKALIYQH-SRCLHWYNLK--DHKQDVIE 334 (366)
Q Consensus 276 ~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~--t~~~~~v~ 334 (366)
. ..+......+...+ ..+.....-+.++++|+.+|.... +..+.+|+++ +++++.+.
T Consensus 207 ~--~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 207 P--HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred C--CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 3 23455555544211 111112223667789997777643 3457777774 34455443
No 139
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=42.48 E-value=14 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHccCCc--------cceeeeeecccccccccCC
Q 017755 2 SSLPLDLISDILSRLPV--------KPLLRFRCVSKCFCGLIDS 37 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP~--------~~l~r~~~VcK~W~~li~~ 37 (366)
+.||.+++.+|+.|.-- ++++.+..||+.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 37999999999998852 2788999999999997654
No 140
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.27 E-value=2.2e+02 Score=25.54 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=42.2
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
+|.+.+-..... .+-+|...+.. +.-|.... ... ...-+-...|+..|+=+..+..+..+|.+|++.
T Consensus 58 ~gs~~aSgG~Dr--~I~LWnv~gdc-eN~~~lkg---Hsg-----AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSDR--AIVLWNVYGDC-ENFWVLKG---HSG-----AVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCcc--eEEEEeccccc-cceeeecc---ccc-----eeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 455554444444 69999965432 35677551 000 122344556888777777788899999999985
No 141
>PF13854 Kelch_5: Kelch motif
Probab=41.31 E-value=59 Score=19.16 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=21.7
Q ss_pred CceEECCeEEEEEeeCC-CCCCcceEEEEECCC
Q 017755 198 NGVFIAGALHWLAARGS-VRTGQNMILAFDLKS 229 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~-~~~~~~~i~~fD~~~ 229 (366)
.++.+++.+|..+.... .......+..||+.+
T Consensus 9 s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 9 SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 36788999999998763 222224677777764
No 142
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=40.95 E-value=3e+02 Score=25.50 Aligned_cols=198 Identities=12% Similarity=0.113 Sum_probs=105.6
Q ss_pred EEecccc-eEEeee-c-CceEEEEcCCCcceEe-cCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeE
Q 017755 96 VIGCCHG-LLAMFN-R-RLGMSVFNPTTKKFKL-FPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLE 171 (366)
Q Consensus 96 ~~~s~nG-Ll~~~~-~-~~~~~V~NP~t~~~~~-lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 171 (366)
+.-|-+| ++.+.+ . ...+-|.|..+++... +|.+. . ...|-.....|-+.|... .
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~-------------~~vy~t~e~~~~~~~~Dg-------~ 168 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-C-------------YHIFPTANDTFFMHCRDG-------S 168 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-C-------------cEEEEecCCccEEEeecC-------c
Confidence 4445555 455554 3 6688899999999764 66533 1 122333334455555321 1
Q ss_pred EEEEEcC-CCcEEecCCCCc--e--eecCCCCc--eEECCeEEEEEeeCCCCCCcceEEEEECCCc------eeEEECCC
Q 017755 172 VIIYSLK-ADTWRRTREFPY--Y--ILDDRCNG--VFIAGALHWLAARGSVRTGQNMILAFDLKSE------KFYEVQQP 238 (366)
Q Consensus 172 ~~vyss~-~~~W~~~~~~p~--~--~~~~~~~~--v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e------~~~~i~~P 238 (366)
...++++ ++. ......+. . .... ..+ .-.+|+.+|+..++ .|-.+|+.+. .|..+..-
T Consensus 169 ~~~v~~d~~g~-~~~~~~~vf~~~~~~v~-~rP~~~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGN-PKIKPTEVFHPEDEYLI-NHPAYSNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEA 239 (352)
T ss_pred eEEEEecCCCc-eEEeeeeeecCCccccc-cCCceEcCCCcEEEEecCC-------eEEEEecCCCcceecceeeecccc
Confidence 1122222 122 11111111 0 1111 123 33479999999884 7888886432 34443211
Q ss_pred ---CCCC-CCeeeEEEEE--CCEEEEEEecCC-----CCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeC
Q 017755 239 ---HGMK-GGFCSQVGVL--RGCLWINSYYHD-----EPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKD 307 (366)
Q Consensus 239 ---~~~~-~~~~~~l~~~--~G~L~~v~~~~~-----~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 307 (366)
.+-. .+... ++.- +++|++...... ...=.||+++- .++..+.+|....- ..-+++.++
T Consensus 240 ~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG~~-----~~~iavS~D 309 (352)
T TIGR02658 240 EKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELGHE-----IDSINVSQD 309 (352)
T ss_pred ccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCCCc-----eeeEEECCC
Confidence 1111 11222 3333 467777443111 11238999984 56888888887653 666889999
Q ss_pred CC-eEEEEEc-CCeEEEEECCCCcE-EEE
Q 017755 308 GD-KALIYQH-SRCLHWYNLKDHKQ-DVI 333 (366)
Q Consensus 308 g~-~i~l~~~-~~~l~~ydl~t~~~-~~v 333 (366)
|+ .++.... ...+.++|..+++. +.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99 5555542 34599999999864 555
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.21 E-value=4.1e+02 Score=26.85 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEE-EECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCccee
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVG-VLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYT 299 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~-~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (366)
.|.--|+..|....+..... +...+. ..++.+.+.+...+ +++||.-++ -+..|.++.. ..
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn----~vYsis~~~~~~~Ivs~gEDr--tlriW~~~e--------~~q~I~lPtt----si 262 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTN----FVYSISMALSDGLIVSTGEDR--TLRIWKKDE--------CVQVITLPTT----SI 262 (745)
T ss_pred eEEEEeccCceeeeeeccce----EEEEEEecCCCCeEEEecCCc--eEEEeecCc--------eEEEEecCcc----ce
Confidence 56666666666555443222 234444 34567777777555 799998773 3556665553 34
Q ss_pred EEEEEEeCCCeEEEEEcCCeEEEEEC
Q 017755 300 EAFAFSKDGDKALIYQHSRCLHWYNL 325 (366)
Q Consensus 300 ~~~~~~~~g~~i~l~~~~~~l~~ydl 325 (366)
.-..+.++|+ |+....++.+.+|-.
T Consensus 263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 263 WSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEEEeeCCC-EEEeccCceEEEEEe
Confidence 4455666777 666666654555443
No 144
>PRK04792 tolB translocation protein TolB; Provisional
Probab=40.10 E-value=3.4e+02 Score=25.95 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=96.9
Q ss_pred CceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
...++++|..+++...+...+... ....+.|..+. ++..... +....+.+++.+++..+.+..-.
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~-----------~~~~wSPDG~~--La~~~~~--~g~~~Iy~~dl~tg~~~~lt~~~ 305 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN-----------GAPRFSPDGKK--LALVLSK--DGQPEIYVVDIATKALTRITRHR 305 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc-----------CCeeECCCCCE--EEEEEeC--CCCeEEEEEECCCCCeEECccCC
Confidence 347999999998877665432111 12344444332 2222221 23456777888888887765321
Q ss_pred ceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 190 YYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
... ......-+|+ +++...... ...|..+|+.+.+.+.+....... ........+..|++...... ..
T Consensus 306 ~~~---~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~~SpDG~~l~~~~~~~g--~~ 374 (448)
T PRK04792 306 AID---TEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQN--LGGSITPDGRSMIMVNRTNG--KF 374 (448)
T ss_pred CCc---cceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCCC--cCeeECCCCCEEEEEEecCC--ce
Confidence 100 0011223553 444433221 147889999888877663211110 11222222235555444332 67
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v~~ 335 (366)
+||.++-.+ ..... +..... ...| .+.++|+.|++..... .++.+|.+.+..+.+..
T Consensus 375 ~I~~~dl~~--g~~~~---lt~~~~----d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 375 NIARQDLET--GAMQV---LTSTRL----DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEEEECCC--CCeEE---ccCCCC----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 899988532 22322 221111 1222 5778898777765432 37888886665555543
No 145
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=39.66 E-value=3.9e+02 Score=26.45 Aligned_cols=113 Identities=14% Similarity=0.250 Sum_probs=64.3
Q ss_pred ECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCC--eeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCC
Q 017755 202 IAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGG--FCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQ 279 (366)
Q Consensus 202 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~--~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~ 279 (366)
.+..||..+... .+..||++.++|- -|...+.+ ....+.++.|-|++-+. .+ .++.|-..+-.
T Consensus 144 ~scDly~~gsg~-------evYRlNLEqGrfL---~P~~~~~~~lN~v~in~~hgLla~Gt~-~g--~VEfwDpR~ks-- 208 (703)
T KOG2321|consen 144 PSCDLYLVGSGS-------EVYRLNLEQGRFL---NPFETDSGELNVVSINEEHGLLACGTE-DG--VVEFWDPRDKS-- 208 (703)
T ss_pred CCccEEEeecCc-------ceEEEEccccccc---cccccccccceeeeecCccceEEeccc-Cc--eEEEecchhhh--
Confidence 345677766553 7999999999982 23333211 24455555565543322 22 68889776421
Q ss_pred CCeeEEEEecCC----CCCCcc---eeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 280 QSWSKLCSFSKM----LHETCY---YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 280 ~~W~~~~~i~~~----~~~~~~---~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
.+..+... ..++.. -...+.|..+|--+-+.+..+.++.||+++.+=-.+
T Consensus 209 ----rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 209 ----RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred ----hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 12222221 222221 245566666675555656667799999999875555
No 146
>PF13013 F-box-like_2: F-box-like domain
Probab=39.51 E-value=5.8 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHccCCccceeeeeeccc
Q 017755 2 SSLPLDLISDILSRLPVKPLLRFRCVSK 29 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP~~~l~r~~~VcK 29 (366)
.+||+||++.|+..-..+.+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4699999999999998887765555554
No 147
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=38.13 E-value=44 Score=32.07 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=76.1
Q ss_pred EEcCCCcceEecCCCCCCCccCC-CCC-CeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCC---CC
Q 017755 115 VFNPTTKKFKLFPQFWSDCYTDY-MTN-NFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTRE---FP 189 (366)
Q Consensus 115 V~NP~t~~~~~lP~~~~~~~~~~-~~~-~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~---~p 189 (366)
.=-|.+-+|-.+|+..... ... .+. ...-..+.+++.++.-.+-+-. ++...-..+..|+.+.+.|..+.. .|
T Consensus 233 ~q~ey~~~W~~i~~~~~~~-~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW-dG~~~l~DFW~Y~v~e~~W~~iN~~t~~P 310 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKG-DGEDNRPGMRGGHQMVIDVQTECVYLYGGW-DGTQDLADFWAYSVKENQWTCINRDTEGP 310 (723)
T ss_pred hcccccccccccCchhhcc-cccccCccccCcceEEEeCCCcEEEEecCc-ccchhHHHHHhhcCCcceeEEeecCCCCC
Confidence 3346777777776654221 000 000 1122234555443332222111 112334567789999999998752 44
Q ss_pred ceeecCCCCceEE--CCeEEEEEeeCCC-----CCCcceEEEEECCCceeEEECCCCCCCCC----eeeEEEEECCE--E
Q 017755 190 YYILDDRCNGVFI--AGALHWLAARGSV-----RTGQNMILAFDLKSEKFYEVQQPHGMKGG----FCSQVGVLRGC--L 256 (366)
Q Consensus 190 ~~~~~~~~~~v~~--~G~lyw~~~~~~~-----~~~~~~i~~fD~~~e~~~~i~~P~~~~~~----~~~~l~~~~G~--L 256 (366)
-.....+ .|.- .-++|.++.+-.. -..+.-+-.||..+..|..+..-...+.+ +...+++.+.+ +
T Consensus 311 G~RsCHR--MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i 388 (723)
T KOG2437|consen 311 GARSCHR--MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI 388 (723)
T ss_pred cchhhhh--hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence 3333333 2222 2367777654321 12335789999999999999765554332 34455666544 8
Q ss_pred EEEEec
Q 017755 257 WINSYY 262 (366)
Q Consensus 257 ~~v~~~ 262 (366)
|+..+.
T Consensus 389 yVfGGr 394 (723)
T KOG2437|consen 389 YVFGGR 394 (723)
T ss_pred EEecCe
Confidence 887764
No 148
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=37.91 E-value=2.5e+02 Score=26.77 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=56.1
Q ss_pred eEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCccee
Q 017755 221 MILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYT 299 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (366)
.+...|+.+.+-..+ ..+.... .....-.+-+|.+...... ..+||+++-.+. ..+. +.. ..+. ..
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~-~~~~----Lt~--~~gi-~~ 285 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDG--SPDIYLMDLDGK-NLPR----LTN--GFGI-NT 285 (425)
T ss_pred eEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCC--CccEEEEcCCCC-ccee----ccc--CCcc-cc
Confidence 566666665544333 3322221 1122222234444444443 799999997542 3222 111 1110 12
Q ss_pred EEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEEEEec
Q 017755 300 EAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVIEIRN 337 (366)
Q Consensus 300 ~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v~~~~ 337 (366)
.=.+.++|+.|++..... .++.||++++..+.+...+
T Consensus 286 -~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 286 -SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred -CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 234567899888886543 4999999999998886543
No 149
>PTZ00420 coronin; Provisional
Probab=37.87 E-value=2.6e+02 Score=27.89 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
.|...++....+. .+.||-+.. -..+..+..... ..-+.+.++|..+.....++.+.+||+++++.
T Consensus 136 ~g~~iLaSgS~Dg-tIrIWDl~t------g~~~~~i~~~~~-----V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 136 MNYYIMCSSGFDS-FVNIWDIEN------EKRAFQINMPKK-----LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCeEEEEEeCCC-eEEEEECCC------CcEEEEEecCCc-----EEEEEECCCCCEEEEEecCCEEEEEECCCCcE
No 150
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=37.01 E-value=1.1e+02 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=37.3
Q ss_pred ccceEEeeecCceEEEEcCCCcceEec--CCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEE
Q 017755 100 CHGLLAMFNRRLGMSVFNPTTKKFKLF--PQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVR 160 (366)
Q Consensus 100 ~nGLl~~~~~~~~~~V~NP~t~~~~~l--P~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 160 (366)
.+|.|---....++|-.||.|+.-..+ .+..... .-..+++-|+|..++-+||.
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al-------~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL-------SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc-------cCceEEEecCcccCcEEEEc
Confidence 456654334577899999999998777 3333332 22367888889888888875
No 151
>PTZ00421 coronin; Provisional
Probab=36.85 E-value=4.1e+02 Score=25.91 Aligned_cols=203 Identities=8% Similarity=0.005 Sum_probs=92.4
Q ss_pred cc-eEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCC
Q 017755 101 HG-LLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKA 179 (366)
Q Consensus 101 nG-Ll~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~ 179 (366)
+| +|.....++.+.+||-.++....-...+...+... ......+.+.|..+++ ++.. .....+.+++.++
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---~~~V~~l~f~P~~~~i-LaSg-----s~DgtVrIWDl~t 157 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH---TKKVGIVSFHPSAMNV-LASA-----GADMVVNVWDVER 157 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC---CCcEEEEEeCcCCCCE-EEEE-----eCCCEEEEEECCC
Confidence 44 44444456788899876543211000000000000 1123346666654432 2221 1234577888876
Q ss_pred CcEE-ecCCCCceeecCCCCce--EECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCCCeeeEEEEEC-C
Q 017755 180 DTWR-RTREFPYYILDDRCNGV--FIAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKGGFCSQVGVLR-G 254 (366)
Q Consensus 180 ~~W~-~~~~~p~~~~~~~~~~v--~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~l~~~~-G 254 (366)
+.-. .+..-.... .++ .-+|.+...+..+ ..|-.+|+.+.+.. .+....... ....+..-+ +
T Consensus 158 g~~~~~l~~h~~~V-----~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~H~~~~--~~~~~w~~~~~ 224 (493)
T PTZ00421 158 GKAVEVIKCHSDQI-----TSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEAHASAK--SQRCLWAKRKD 224 (493)
T ss_pred CeEEEEEcCCCCce-----EEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEecCCCCc--ceEEEEcCCCC
Confidence 5321 111101000 112 2256655555444 37889999876542 222221110 111122223 3
Q ss_pred EEEEEEecC-CCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc-CCeEEEEECCCCcEEE
Q 017755 255 CLWINSYYH-DEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH-SRCLHWYNLKDHKQDV 332 (366)
Q Consensus 255 ~L~~v~~~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~t~~~~~ 332 (366)
.+..+.... ....+.+|-+.... .. ...+...... ......+.+++..+++... ++.+.+||+.+++...
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~--~p---~~~~~~d~~~---~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMA--SP---YSTVDLDQSS---ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCC--Cc---eeEeccCCCC---ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 443333221 23379999887522 11 1112111110 1222345668886777653 6679999999887654
Q ss_pred E
Q 017755 333 I 333 (366)
Q Consensus 333 v 333 (366)
.
T Consensus 297 ~ 297 (493)
T PTZ00421 297 C 297 (493)
T ss_pred E
Confidence 4
No 152
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=36.58 E-value=3.1e+02 Score=24.41 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=58.1
Q ss_pred EEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCC
Q 017755 249 VGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDH 328 (366)
Q Consensus 249 l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~ 328 (366)
....+|..++...... .+++|-+... +..+++..... ...-+++.+|...|+=...+..+..||..++
T Consensus 70 ~~s~dg~~alS~swD~--~lrlWDl~~g------~~t~~f~GH~~----dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDG--TLRLWDLATG------ESTRRFVGHTK----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred EEccCCceEEeccccc--eEEEEEecCC------cEEEEEEecCC----ceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 3344677777766666 7999999852 12333332221 3445777777665655556667999999887
Q ss_pred cEEEEEEecCCCceeeeeeeecc
Q 017755 329 KQDVIEIRNENQSFWDAFICMGS 351 (366)
Q Consensus 329 ~~~~v~~~~~~~~~~~~~~y~~s 351 (366)
-.-++.-.++ ..|-.+..|+|+
T Consensus 138 ck~t~~~~~~-~~WVscvrfsP~ 159 (315)
T KOG0279|consen 138 CKYTIHEDSH-REWVSCVRFSPN 159 (315)
T ss_pred EEEEEecCCC-cCcEEEEEEcCC
Confidence 6666644444 578888888877
No 153
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=36.32 E-value=2.8e+02 Score=27.02 Aligned_cols=165 Identities=10% Similarity=0.101 Sum_probs=80.8
Q ss_pred eEEEEEEcCCCcEEecC---CCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCcee--EEEC--CCCCCC
Q 017755 170 LEVIIYSLKADTWRRTR---EFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKF--YEVQ--QPHGMK 242 (366)
Q Consensus 170 ~~~~vyss~~~~W~~~~---~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~--~~i~--~P~~~~ 242 (366)
-+.++|+-.+++|-.-+ ++|.+..-.. .|+.+.++|.++..-+. ..+.=--|.+..-+| ..++ .|....
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~G--fvcdGtrilvFGGMvEY--GkYsNdLYELQasRWeWkrlkp~~p~nG~ 132 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFG--FVCDGTRILVFGGMVEY--GKYSNDLYELQASRWEWKRLKPKTPKNGP 132 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcc--eEecCceEEEEccEeee--ccccchHHHhhhhhhhHhhcCCCCCCCCC
Confidence 46899999999997533 4565544322 34444477776654321 111222233444444 4441 111110
Q ss_pred C---CeeeEEEEECCEEEEEEec----CCC-Ce-----EEEEEEeec--CCCCCeeEEEEecCCCCCCcceeEEEEEEeC
Q 017755 243 G---GFCSQVGVLRGCLWINSYY----HDE-PR-----CDIWVMKEY--GSQQSWSKLCSFSKMLHETCYYTEAFAFSKD 307 (366)
Q Consensus 243 ~---~~~~~l~~~~G~L~~v~~~----~~~-~~-----l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 307 (366)
. ..-..+...+.+-|++..- ++. ++ =++++|+-. ...--|.....-...+.+..-+..++..-+|
T Consensus 133 pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKD 212 (830)
T KOG4152|consen 133 PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKD 212 (830)
T ss_pred CCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEecc
Confidence 0 0122444455666665552 111 01 144444422 2223576544333323222225666666554
Q ss_pred C---CeEEEEEcC----CeEEEEECCCCcEEEEEEecC
Q 017755 308 G---DKALIYQHS----RCLHWYNLKDHKQDVIEIRNE 338 (366)
Q Consensus 308 g---~~i~l~~~~----~~l~~ydl~t~~~~~v~~~~~ 338 (366)
. +++++.... +.+...|++|-.|.+.++.|.
T Consensus 213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~ 250 (830)
T KOG4152|consen 213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGV 250 (830)
T ss_pred CCcceEEEEcccccccccceeEEecceeecccccccCC
Confidence 4 222222211 249999999999999987765
No 154
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.70 E-value=1.2e+02 Score=28.38 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=50.4
Q ss_pred EEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCC
Q 017755 248 QVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKD 327 (366)
Q Consensus 248 ~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t 327 (366)
..+-+-+...++++..+. .+-.|-++... .+.|.-+.. + +..-+++..||+.+++...+.++..||.++
T Consensus 317 sc~W~pDg~~~V~Gs~dr-~i~~wdlDgn~-~~~W~gvr~---~------~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDR-TIIMWDLDGNI-LGNWEGVRD---P------KVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred eeEEccCCceeEecCCCC-cEEEecCCcch-hhccccccc---c------eeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 334444555566665543 78889998753 567876553 1 355678888999888888887788888887
Q ss_pred CcEE
Q 017755 328 HKQD 331 (366)
Q Consensus 328 ~~~~ 331 (366)
..-+
T Consensus 386 ~~dr 389 (519)
T KOG0293|consen 386 RVDR 389 (519)
T ss_pred hhhh
Confidence 7655
No 155
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=35.70 E-value=4.9e+02 Score=26.49 Aligned_cols=193 Identities=14% Similarity=0.151 Sum_probs=94.5
Q ss_pred EEecccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEE
Q 017755 96 VIGCCHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIY 175 (366)
Q Consensus 96 ~~~s~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vy 175 (366)
+.=+.||=.+.+...+.+.+.+-.|++.. +|...... . ...-.+..+|+ +=+++.. .+..-.++|
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~ed-~------d~ita~~l~~d--~~~L~~a-----~rs~llrv~ 89 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNED-E------DEITALALTPD--EEVLVTA-----SRSQLLRVW 89 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCccc-h------hhhheeeecCC--ccEEEEe-----eccceEEEE
Confidence 44466776655544567888888888865 55544332 1 12223444443 3233333 245678999
Q ss_pred EcCCC----cEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEE-ECCCCCCCCCeeeEEE
Q 017755 176 SLKAD----TWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYE-VQQPHGMKGGFCSQVG 250 (366)
Q Consensus 176 ss~~~----~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~~l~ 250 (366)
++.++ +|+.+.+-|.-. +-+++.-.-++.-+.. ..+.+-|...+.... +..-.+. ....
T Consensus 90 ~L~tgk~irswKa~He~Pvi~-------ma~~~~g~LlAtggaD----~~v~VWdi~~~~~th~fkG~gGv-----Vssl 153 (775)
T KOG0319|consen 90 SLPTGKLIRSWKAIHEAPVIT-------MAFDPTGTLLATGGAD----GRVKVWDIKNGYCTHSFKGHGGV-----VSSL 153 (775)
T ss_pred EcccchHhHhHhhccCCCeEE-------EEEcCCCceEEecccc----ceEEEEEeeCCEEEEEecCCCce-----EEEE
Confidence 99875 899876555322 1222222222222211 367777777765543 2221111 1111
Q ss_pred EECC---EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 251 VLRG---CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 251 ~~~G---~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
...+ +.-++.+..+ ..+.+|-+++. .. ....+.... ....+++.+++..++-...++-+.+||+.
T Consensus 154 ~F~~~~~~~lL~sg~~D-~~v~vwnl~~~---~t-------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATD-GTVRVWNLNDK---RT-------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred EeCCccchhheeecCCC-ceEEEEEcccC---ch-------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 1111 1111222111 14666666531 11 000111111 45667888888756655666668999996
Q ss_pred CCcE
Q 017755 327 DHKQ 330 (366)
Q Consensus 327 t~~~ 330 (366)
+-+.
T Consensus 223 ~~~~ 226 (775)
T KOG0319|consen 223 QYKK 226 (775)
T ss_pred hhhh
Confidence 5544
No 156
>PLN02772 guanylate kinase
Probab=35.26 E-value=1.8e+02 Score=27.30 Aligned_cols=82 Identities=4% Similarity=0.041 Sum_probs=50.8
Q ss_pred eEEEEECCEEEEEEecCCC--CeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEc----CCeE
Q 017755 247 SQVGVLRGCLWINSYYHDE--PRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQH----SRCL 320 (366)
Q Consensus 247 ~~l~~~~G~L~~v~~~~~~--~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~----~~~l 320 (366)
....+.++++|++....+. ....+|.++- ....|+.--.....+.+. ..+..++..++. |++... +..+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~--~t~~W~~P~V~G~~P~~r--~GhSa~v~~~~r-ilv~~~~~~~~~~~ 102 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDK--ITNNWVSPIVLGTGPKPC--KGYSAVVLNKDR-ILVIKKGSAPDDSI 102 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEEC--CCCcEecccccCCCCCCC--CcceEEEECCce-EEEEeCCCCCccce
Confidence 4567778999999985443 3578999996 357788654444433332 234455554444 666542 2347
Q ss_pred EEEECCCCcEEEE
Q 017755 321 HWYNLKDHKQDVI 333 (366)
Q Consensus 321 ~~ydl~t~~~~~v 333 (366)
.+...+|...+.-
T Consensus 103 w~l~~~t~~~~~~ 115 (398)
T PLN02772 103 WFLEVDTPFVREQ 115 (398)
T ss_pred EEEEcCCHHHHhh
Confidence 8888887766543
No 157
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=35.17 E-value=63 Score=31.05 Aligned_cols=130 Identities=11% Similarity=0.193 Sum_probs=74.4
Q ss_pred ceEECC--eEEEEEeeCCCCCCcceEEEEECCCceeEEECC----CCCCCCCee-eEEEEECCEEEEEEecC-------C
Q 017755 199 GVFIAG--ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQ----PHGMKGGFC-SQVGVLRGCLWINSYYH-------D 264 (366)
Q Consensus 199 ~v~~~G--~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~----P~~~~~~~~-~~l~~~~G~L~~v~~~~-------~ 264 (366)
.|+-.| ++|.-++.++... -.-.-.|+....+|+.++. |-.. .++ ..+-+.+-+|++..-.- .
T Consensus 266 MV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~R--sCHRMVid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 266 MVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGAR--SCHRMVIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred EEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcch--hhhhhhhhhhHhHHhhhhhcccccccccc
Confidence 567766 8998877654211 1245678888999999843 3322 112 22233345777654421 1
Q ss_pred CCeEEEEEEeecCCCCCeeEEEEecCC--CCCCcceeEEEEEEeCCCeEEEEEcC---------CeEEEEECCCCcEEEE
Q 017755 265 EPRCDIWVMKEYGSQQSWSKLCSFSKM--LHETCYYTEAFAFSKDGDKALIYQHS---------RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 265 ~~~l~iW~l~~~~~~~~W~~~~~i~~~--~~~~~~~~~~~~~~~~g~~i~l~~~~---------~~l~~ydl~t~~~~~v 333 (366)
..+-++|+.+. .+..|..+. .+.. .-|+...-+-+++..+..+|++.... .++++||.+...|+..
T Consensus 343 s~RsDfW~FDi--~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 343 SLRSDFWRFDI--DTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ccccceEEEec--CCceeEEec-ccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 33679999996 357898643 2221 11222233445555555545554321 2599999999999877
Q ss_pred E
Q 017755 334 E 334 (366)
Q Consensus 334 ~ 334 (366)
.
T Consensus 420 ~ 420 (723)
T KOG2437|consen 420 R 420 (723)
T ss_pred H
Confidence 3
No 158
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.75 E-value=92 Score=17.80 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCCeEEEEEc-CCeEEEEECCCCcE-EEEEE
Q 017755 307 DGDKALIYQH-SRCLHWYNLKDHKQ-DVIEI 335 (366)
Q Consensus 307 ~g~~i~l~~~-~~~l~~ydl~t~~~-~~v~~ 335 (366)
+|+.+|+... +..+..+|+++++. ..+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5666777553 34689999988765 33444
No 159
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.29 E-value=3.9e+02 Score=24.87 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=96.0
Q ss_pred cCceEEEEcCCCcce-EecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCC
Q 017755 109 RRLGMSVFNPTTKKF-KLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTRE 187 (366)
Q Consensus 109 ~~~~~~V~NP~t~~~-~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~ 187 (366)
..+.+.|.|..|++. .++|..... ...+.+.|. ++|-.|. . +.-.+.++++.+++ .+..
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~-----------h~~~~~s~D-gr~~yv~--~----rdg~vsviD~~~~~--~v~~ 73 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP-----------HAGLKFSPD-GRYLYVA--N----RDGTVSVIDLATGK--VVAT 73 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE-----------EEEEE-TT--SSEEEEE--E----TTSEEEEEETTSSS--EEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc-----------eeEEEecCC-CCEEEEE--c----CCCeEEEEECCccc--EEEE
Confidence 467889999999875 456554211 222333332 3443333 1 22367888888775 3322
Q ss_pred CCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCce-eEEECCCCC---CCCCeeeEEEEEC-CEEEEEEec
Q 017755 188 FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEK-FYEVQQPHG---MKGGFCSQVGVLR-GCLWINSYY 262 (366)
Q Consensus 188 ~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~---~~~~~~~~l~~~~-G~L~~v~~~ 262 (366)
++.+..... -++.-+|+.-+.+.... ..+..+|.++.+ ...++.... ...+....+.... +..+++...
T Consensus 74 i~~G~~~~~-i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 74 IKVGGNPRG-IAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp EE-SSEEEE-EEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred EecCCCcce-EEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 222221111 13456888777666543 489999998754 344544321 1111122343333 445666664
Q ss_pred CCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE-cCCeEEEEECCCCcEEEE
Q 017755 263 HDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ-HSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 263 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~ydl~t~~~~~v 333 (366)
+. =+||+++..+.+.-. ...+..... .+-.++.++|..++... ....+.+.|.+++++...
T Consensus 148 d~---~~I~vVdy~d~~~~~--~~~i~~g~~-----~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 148 DT---GEIWVVDYSDPKNLK--VTTIKVGRF-----PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TT---TEEEEEETTTSSCEE--EEEEE--TT-----EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred cC---CeEEEEEeccccccc--eeeeccccc-----ccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 43 378998743322222 233443333 34478888888666654 344699999999987654
No 160
>PTZ00334 trans-sialidase; Provisional
Probab=33.98 E-value=3.2e+02 Score=28.35 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=50.5
Q ss_pred CceEE-CCeEEEEEeeCCCCCCcceEEEEECCCceeEEEC-CCCCCCCCeeeEEEEEC-CEEEEEEecCCCCeEEEEEEe
Q 017755 198 NGVFI-AGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQ-QPHGMKGGFCSQVGVLR-GCLWINSYYHDEPRCDIWVMK 274 (366)
Q Consensus 198 ~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~~l~~~~-G~L~~v~~~~~~~~l~iW~l~ 274 (366)
++|.. ||.|-+-..-.........++.|-..+..|..-. +|+.-+ ....+.|.+ |+|.|+..+... .-++++-.
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC--~~P~I~EWe~gkLlM~t~C~dG-~RrVYES~ 340 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGC--SDPSVVEWKEGKLMMMTACDDG-RRRVYESG 340 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCC--CCCEEEEEcCCeEEEEEEeCCC-CEEEEEEC
Confidence 45544 7887776543222223356777866677786542 232211 466899996 999998887654 34555544
Q ss_pred ecCCCCCeeE
Q 017755 275 EYGSQQSWSK 284 (366)
Q Consensus 275 ~~~~~~~W~~ 284 (366)
| +..+|+.
T Consensus 341 D--mG~tWtE 348 (780)
T PTZ00334 341 D--KGDSWTE 348 (780)
T ss_pred C--CCCChhh
Confidence 4 6678986
No 161
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=33.26 E-value=2.2e+02 Score=21.62 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred ceeEEEEEEcCCCcEEecCCCC-ceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEE-ECCCceeEEE--CCCCCCCC
Q 017755 168 DYLEVIIYSLKADTWRRTREFP-YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAF-DLKSEKFYEV--QQPHGMKG 243 (366)
Q Consensus 168 ~~~~~~vyss~~~~W~~~~~~p-~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~f-D~~~e~~~~i--~~P~~~~~ 243 (366)
....+-.|+.++.+|+.+..+. .........=+-.+|+|-.+............|-++ |..+++|+.. .+|.....
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~ 97 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSWQH 97 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHHhc
Confidence 4455666788999998886431 111112223467899999988766432112344444 6778999764 45554321
Q ss_pred ----CeeeEEEEE-CCEEEEE
Q 017755 244 ----GFCSQVGVL-RGCLWIN 259 (366)
Q Consensus 244 ----~~~~~l~~~-~G~L~~v 259 (366)
......+.. +|.+.++
T Consensus 98 ~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 98 FVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccCCcEEEEEEEcCCCEEEEE
Confidence 112233333 4777776
No 162
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=32.50 E-value=3.2e+02 Score=23.39 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=23.0
Q ss_pred eeEEEEEEeCCCeEEEEE-cCCeEEEEECCCCcEEE
Q 017755 298 YTEAFAFSKDGDKALIYQ-HSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 298 ~~~~~~~~~~g~~i~l~~-~~~~l~~ydl~t~~~~~ 332 (366)
....+++.+.|. ++... .+.....||++.+++-.
T Consensus 233 avaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred eeEEEEECCCcc-eeeeccCCCceEEEEeeCCceee
Confidence 345577788887 55544 44568889998887643
No 163
>PRK05137 tolB translocation protein TolB; Provisional
Probab=32.27 E-value=4.4e+02 Score=24.94 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=95.3
Q ss_pred CceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
...++++|+.+++...+...+... ....+.|.. + +++..... .....+.+++.+++.-+.+..-+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~-----------~~~~~SPDG-~-~la~~~~~--~g~~~Iy~~d~~~~~~~~Lt~~~ 289 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMT-----------FAPRFSPDG-R-KVVMSLSQ--GGNTDIYTMDLRSGTTTRLTDSP 289 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcc-----------cCcEECCCC-C-EEEEEEec--CCCceEEEEECCCCceEEccCCC
Confidence 458999999999887765432111 122334432 2 22222111 23455666788887777665322
Q ss_pred ceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 190 YYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
... ......-+|. +++...... ...|..+|+.+++.+.+....... ......-.+..|+++..... ..
T Consensus 290 ~~~---~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~~--~~~~~SpdG~~ia~~~~~~~--~~ 358 (435)
T PRK05137 290 AID---TSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGRY--STPVWSPRGDLIAFTKQGGG--QF 358 (435)
T ss_pred Ccc---CceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCcc--cCeEECCCCCEEEEEEcCCC--ce
Confidence 110 0011233453 444332221 136888898887776653221110 11222222345555554333 46
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC------CeEEEEECCCCcEEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS------RCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~------~~l~~ydl~t~~~~~v~ 334 (366)
.||+++-.+ . ..+. +.... ......+.+||+.|++.... ..++.+|+++++.+.+.
T Consensus 359 ~i~~~d~~~--~-~~~~--lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 359 SIGVMKPDG--S-GERI--LTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEEECCC--C-ceEe--ccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 777776422 2 2221 11111 12224567899877776532 25999999988887664
No 164
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=32.22 E-value=1.2e+02 Score=27.47 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCe-EEEEECCCCc
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRC-LHWYNLKDHK 329 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~-l~~ydl~t~~ 329 (366)
+|+-...+.... .+.||.++|+..++.=.....+++.. ..-+.|.+|...+++....+. +++|-+..++
T Consensus 97 dGK~lat~~~Dr--~Ir~w~~~DF~~~eHr~~R~nve~dh------pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 97 DGKKLATISGDR--SIRLWDVRDFENKEHRCIRQNVEYDH------PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CCceeEEEeCCc--eEEEEecchhhhhhhhHhhccccCCC------ceEEEECCCcceEEEEEccCCEEEEEEeeecc
No 165
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=32.19 E-value=3.8e+02 Score=24.09 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=90.7
Q ss_pred cCceEEEEcCCCcc-eEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCc----EE
Q 017755 109 RRLGMSVFNPTTKK-FKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADT----WR 183 (366)
Q Consensus 109 ~~~~~~V~NP~t~~-~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~----W~ 183 (366)
.++.++|||-.|.. .+.||-+. .+ .+.-+|-|++ +|...+ +-...+.||++.+.. =+
T Consensus 75 qDGklIvWDs~TtnK~haipl~s-~W----------VMtCA~sPSg-~~VAcG------GLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPS-SW----------VMTCAYSPSG-NFVACG------GLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred cCCeEEEEEcccccceeEEecCc-ee----------EEEEEECCCC-CeEEec------CcCceeEEEecccccccccce
Confidence 35567899987755 44554442 22 2234555653 332222 234567888886431 11
Q ss_pred ecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeE-EECCCCCCCCCeeeEEEEECCEEEEEEec
Q 017755 184 RTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFY-EVQQPHGMKGGFCSQVGVLRGCLWINSYY 262 (366)
Q Consensus 184 ~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~l~~~~G~L~~v~~~ 262 (366)
....++..-.+ -...-+++ .-|-++..++ ....--|+++.+-. .+.. +..+.....|...++..++-...
T Consensus 137 v~r~l~gHtgy-lScC~f~d-D~~ilT~SGD-----~TCalWDie~g~~~~~f~G--H~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 137 VSRELAGHTGY-LSCCRFLD-DNHILTGSGD-----MTCALWDIETGQQTQVFHG--HTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred eeeeecCccce-eEEEEEcC-CCceEecCCC-----ceEEEEEcccceEEEEecC--CcccEEEEecCCCCCCeEEeccc
Confidence 11112211000 00012333 3344454443 24555677766542 2332 11122344455556777777776
Q ss_pred CCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEE
Q 017755 263 HDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQD 331 (366)
Q Consensus 263 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~ 331 (366)
.. .-.||-+.+.. -+..+..... ....+.|.|+|..+.-...+...-.||++.+.--
T Consensus 208 D~--~aklWD~R~~~------c~qtF~ghes----DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 208 DK--SAKLWDVRSGQ------CVQTFEGHES----DINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred cc--ceeeeeccCcc------eeEeeccccc----ccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 65 57888887521 1222221111 4666888888873333334445778888887543
No 166
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=31.99 E-value=4e+02 Score=24.38 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=60.5
Q ss_pred ceEEEEECCCceeEEECCCCCC--CCCeeeEEEE-ECCE-EEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCC
Q 017755 220 NMILAFDLKSEKFYEVQQPHGM--KGGFCSQVGV-LRGC-LWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHET 295 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~i~~P~~~--~~~~~~~l~~-~~G~-L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 295 (366)
..+.++|+.+++...++.|... .+..-..+.- -++. |++.......+.+.+...+-.....++.... ....+..
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e--~~~~Wv~ 235 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE--TSDGWVD 235 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE--ESSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe--cCCccee
Confidence 4788999999988888877322 1222222222 2466 8887777766688888887533233444322 1222211
Q ss_pred cceeEEEEEE-eCCCeEEEEEcC---CeEEEEECCCCcEEEE
Q 017755 296 CYYTEAFAFS-KDGDKALIYQHS---RCLHWYNLKDHKQDVI 333 (366)
Q Consensus 296 ~~~~~~~~~~-~~g~~i~l~~~~---~~l~~ydl~t~~~~~v 333 (366)
...+..+. ++++.+++.... .+++.|+..++..+.+
T Consensus 236 --~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 236 --VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp --SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred --eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 13344444 555555555432 2599999998875544
No 167
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=30.91 E-value=1e+02 Score=17.14 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=18.5
Q ss_pred eEEEEEEeCCCeEEEEEcCCeEEEEE
Q 017755 299 TEAFAFSKDGDKALIYQHSRCLHWYN 324 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~~~~~l~~yd 324 (366)
..-+.+.+++..++-...++.+.+||
T Consensus 14 i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecccccceeeCCCCEEEEEC
Confidence 55577888888566666667788776
No 168
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.16 E-value=5e+02 Score=24.92 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=82.8
Q ss_pred eeEEEEEEcCCCcEEe-cCCCCceeecCCCCce--EECCeEEEEEeeCCCCCCcceEEEEECCCce-eEEECCCCCCCCC
Q 017755 169 YLEVIIYSLKADTWRR-TREFPYYILDDRCNGV--FIAGALHWLAARGSVRTGQNMILAFDLKSEK-FYEVQQPHGMKGG 244 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~-~~~~p~~~~~~~~~~v--~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~~ 244 (366)
..++.+|++.+.+=+. +..+-... .++ .-+|.|...+...+ .+=.||.++.. .+.+.......
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v-----~s~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv-- 113 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVV-----YSVDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPV-- 113 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccce-----eEEEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCce--
Confidence 5679999998754322 22111111 233 44599988876653 78899955522 12222211110
Q ss_pred eeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEE-cCCeEEEE
Q 017755 245 FCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQ-HSRCLHWY 323 (366)
Q Consensus 245 ~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~-~~~~l~~y 323 (366)
........++.+.+.+.+.. ...+|.+... . + ...+. .... +..-..+.+..+.|++.. .++.+-.|
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~--v~k~~d~s~a---~--v-~~~l~--~htD--YVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDK--VVKYWDLSTA---Y--V-QAELS--GHTD--YVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred eEEEecccCCeEEEecCCCc--eEEEEEcCCc---E--E-EEEec--CCcc--eeEeeccccCCCeEEEecCCCceEEEE
Confidence 12334444555555555444 7899998852 2 2 22222 2111 344455555445466664 56679999
Q ss_pred ECCCCcEEEEEEecCCCceeeeeeeecc
Q 017755 324 NLKDHKQDVIEIRNENQSFWDAFICMGS 351 (366)
Q Consensus 324 dl~t~~~~~v~~~~~~~~~~~~~~y~~s 351 (366)
|.++.+-+.+++..+ ..-...+|.+|
T Consensus 182 DtR~~~~~v~elnhg--~pVe~vl~lps 207 (487)
T KOG0310|consen 182 DTRSLTSRVVELNHG--CPVESVLALPS 207 (487)
T ss_pred EeccCCceeEEecCC--CceeeEEEcCC
Confidence 999998555556433 23344444443
No 169
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=30.05 E-value=3.2e+02 Score=22.68 Aligned_cols=188 Identities=13% Similarity=0.176 Sum_probs=86.4
Q ss_pred Eecccc-eEEeeecCceEEEEcCCCcceE-ecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEE
Q 017755 97 IGCCHG-LLAMFNRRLGMSVFNPTTKKFK-LFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVII 174 (366)
Q Consensus 97 ~~s~nG-Ll~~~~~~~~~~V~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~v 174 (366)
.-+.+| .++.....+.+.+||..+++.. .+.... .....+.+.+. + +++.... ..-.+.+
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~-~--~~~~~~~----~~~~i~~ 119 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT-----------SYVSSVAFSPD-G--RILSSSS----RDKTIKV 119 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC-----------CcEEEEEEcCC-C--CEEEEec----CCCeEEE
Confidence 333444 5555555778999999875432 222111 11233455544 2 2333221 2345777
Q ss_pred EEcCCCcE-EecCCCCceeecCCCCceEE--CCeEEEEEeeCCCCCCcceEEEEECCCcee-EEECCCCCCCCCeeeEEE
Q 017755 175 YSLKADTW-RRTREFPYYILDDRCNGVFI--AGALHWLAARGSVRTGQNMILAFDLKSEKF-YEVQQPHGMKGGFCSQVG 250 (366)
Q Consensus 175 yss~~~~W-~~~~~~p~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~l~ 250 (366)
|+..++.- ..+....... ..+.. +|.+...+..+ ..|..+|+.+.+. ..+..+.. ....+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~~----~i~~~~ 184 (289)
T cd00200 120 WDVETGKCLTTLRGHTDWV-----NSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTGHTG----EVNSVA 184 (289)
T ss_pred EECCCcEEEEEeccCCCcE-----EEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEecCcc----ccceEE
Confidence 77764422 2221111000 11111 13433333322 3688888875443 33332211 112222
Q ss_pred EE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEe-cCCCCCCcceeEEEEEEeCCCeEEEEEc-CCeEEEEECCC
Q 017755 251 VL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSF-SKMLHETCYYTEAFAFSKDGDKALIYQH-SRCLHWYNLKD 327 (366)
Q Consensus 251 ~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~g~~i~l~~~-~~~l~~ydl~t 327 (366)
.. +|+..++..... .+.+|.+... ..+..+ .... ...-+.+.+++. +++... ++.+..||+++
T Consensus 185 ~~~~~~~l~~~~~~~--~i~i~d~~~~------~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 185 FSPDGEKLLSSSSDG--TIKLWDLSTG------KCLGTLRGHEN-----GVNSVAFSPDGY-LLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ECCCcCEEEEecCCC--cEEEEECCCC------ceecchhhcCC-----ceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC
Confidence 22 343333333333 6899987641 122222 1111 233456666766 444443 66799999987
Q ss_pred CcEE
Q 017755 328 HKQD 331 (366)
Q Consensus 328 ~~~~ 331 (366)
++..
T Consensus 251 ~~~~ 254 (289)
T cd00200 251 GECV 254 (289)
T ss_pred ceeE
Confidence 6543
No 170
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=29.87 E-value=4e+02 Score=23.72 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=96.9
Q ss_pred cCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCC
Q 017755 109 RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREF 188 (366)
Q Consensus 109 ~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~ 188 (366)
++..+.+||-.+.+-.++-..... .+ ...+-|.|...+..++... ..-.+.+.++++.+=+..-
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~--------~W-VscvrfsP~~~~p~Ivs~s-----~DktvKvWnl~~~~l~~~~-- 188 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHR--------EW-VSCVRFSPNESNPIIVSAS-----WDKTVKVWNLRNCQLRTTF-- 188 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCc--------Cc-EEEEEEcCCCCCcEEEEcc-----CCceEEEEccCCcchhhcc--
Confidence 455788888888887776544311 22 2346677877666666653 2345677777665433321
Q ss_pred CceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 189 PYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 189 p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
+-.-.....-.|..+|.+.--+..+ ..++-.|+...+- ...++... .-..++....+..+...... .+
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkd------g~~~LwdL~~~k~-lysl~a~~---~v~sl~fspnrywL~~at~~--sI 256 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKD------GEAMLWDLNEGKN-LYSLEAFD---IVNSLCFSPNRYWLCAATAT--SI 256 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCC------ceEEEEEccCCce-eEeccCCC---eEeeEEecCCceeEeeccCC--ce
Confidence 1111111112567788776655554 4677777765443 22232222 24455666677666655444 69
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYN 324 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~yd 324 (366)
.||.++....-++= ++..+....-.+...+..++..++|..+|-...+..+..+.
T Consensus 257 kIwdl~~~~~v~~l-~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 257 KIWDLESKAVVEEL-KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEEeccchhhhhhc-cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99999863211110 01111110000111466677777888555444444344443
No 171
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=29.75 E-value=4.6e+02 Score=24.36 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=74.8
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCS 247 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 247 (366)
...+.+++..++.-+.+...+.... .....-+|+ +++...... ...|..+|+.+.+.+.+....... ...
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~~~---~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~--~~~ 283 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGMNG---APAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGID--TEP 283 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCCcc---ceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCC--CCE
Confidence 3567888888876655543221100 012233553 554433221 136888999887766552211111 011
Q ss_pred EEEEECC-EEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC---eEEEE
Q 017755 248 QVGVLRG-CLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR---CLHWY 323 (366)
Q Consensus 248 ~l~~~~G-~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~y 323 (366)
... -+| +|.+...... ...||.++-.+ ..+.++. ...- ......+.++|+.+++...+. .++.|
T Consensus 284 ~~s-~dg~~l~~~s~~~g--~~~iy~~d~~~--~~~~~l~---~~~~----~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 284 SWS-PDGKSIAFTSDRGG--SPQIYMMDADG--GEVRRLT---FRGG----YNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred EEC-CCCCEEEEEECCCC--CceEEEEECCC--CCEEEee---cCCC----CccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 111 145 4544443333 45788777432 3343322 1110 122345678888777776543 69999
Q ss_pred ECCCCcEEEEE
Q 017755 324 NLKDHKQDVIE 334 (366)
Q Consensus 324 dl~t~~~~~v~ 334 (366)
|++++..+.+.
T Consensus 352 d~~~~~~~~l~ 362 (417)
T TIGR02800 352 DLDGGGERVLT 362 (417)
T ss_pred eCCCCCeEEcc
Confidence 99998776663
No 172
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.69 E-value=3.9e+02 Score=23.46 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=89.6
Q ss_pred cCceEEEEcCCCcceE-ecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCC
Q 017755 109 RRLGMSVFNPTTKKFK-LFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTRE 187 (366)
Q Consensus 109 ~~~~~~V~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~ 187 (366)
-+..+-.|-..|+.+. .++-+.+.. - .+-.-|. +++-.+ .....+.+|+..++.=.++..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqV---------N--rLeiTpd-k~~LAa-------a~~qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQV---------N--RLEITPD-KKDLAA-------AGNQHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccce---------e--eEEEcCC-cchhhh-------ccCCeeEEEEccCCCCCceeE
Confidence 3556778888888875 455444332 1 1222221 111111 135678888888764332221
Q ss_pred CCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCC
Q 017755 188 FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEP 266 (366)
Q Consensus 188 ~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~ 266 (366)
....-.-...-+...+|+-...+.++ ..+-.-|+..-+.+.. +.|... ....+---++.|..-+. ..
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseD------gt~kIWdlR~~~~qR~~~~~spV---n~vvlhpnQteLis~dq--sg- 146 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSED------GTVKIWDLRSLSCQRNYQHNSPV---NTVVLHPNQTELISGDQ--SG- 146 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCC------ceEEEEeccCcccchhccCCCCc---ceEEecCCcceEEeecC--CC-
Confidence 11000000001345667655555554 3677788887555432 444322 11222222345543332 22
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
.+.||-|.+.. -+ +.+-+... .-...+.+.++|.++.-....+..+++++-+++
T Consensus 147 ~irvWDl~~~~----c~--~~liPe~~---~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 147 NIRVWDLGENS----CT--HELIPEDD---TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred cEEEEEccCCc----cc--cccCCCCC---cceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 79999998631 11 11111111 135667888888855444455569999987744
No 173
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.51 E-value=6.2e+02 Score=25.80 Aligned_cols=102 Identities=11% Similarity=0.210 Sum_probs=53.5
Q ss_pred eEEEEECCCceeEEECCCCCCCC--CeeeEEEEE-CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKG--GFCSQVGVL-RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY 297 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~--~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 297 (366)
.|...|+++.+-. +|..... ...-.+... ++..-+...... -+++|.++...--.+|.-.|+=+
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~--llrv~~L~tgk~irswKa~He~P-------- 107 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQ--LLRVWSLPTGKLIRSWKAIHEAP-------- 107 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccc--eEEEEEcccchHhHhHhhccCCC--------
Confidence 6899999998876 4433311 011222222 333333333233 69999999643344565444221
Q ss_pred eeEEEEEEeCCCeEEEE-EcCCeEEEEECCCCcEEEEEEecC
Q 017755 298 YTEAFAFSKDGDKALIY-QHSRCLHWYNLKDHKQDVIEIRNE 338 (366)
Q Consensus 298 ~~~~~~~~~~g~~i~l~-~~~~~l~~ydl~t~~~~~v~~~~~ 338 (366)
...+.+.+.|. ++-. ..+..+-++|.+.+.+. ..++|.
T Consensus 108 -vi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~t-h~fkG~ 146 (775)
T KOG0319|consen 108 -VITMAFDPTGT-LLATGGADGRVKVWDIKNGYCT-HSFKGH 146 (775)
T ss_pred -eEEEEEcCCCc-eEEeccccceEEEEEeeCCEEE-EEecCC
Confidence 33356666663 2222 23456889999776543 334443
No 174
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=28.52 E-value=1.7e+02 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=24.9
Q ss_pred EEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEEEecC
Q 017755 302 FAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNE 338 (366)
Q Consensus 302 ~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~~~~ 338 (366)
++..|||+.|-=...++.+..||+++++..--.+.|+
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCc
Confidence 5556788755555566679999999987544444444
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.78 E-value=4.2e+02 Score=26.07 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=60.6
Q ss_pred cccceEEeee-cCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEc
Q 017755 99 CCHGLLAMFN-RRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSL 177 (366)
Q Consensus 99 s~nGLl~~~~-~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss 177 (366)
+.+|-+++++ .+.++.||||..++... .....+ .--.+..-|.|.+++=.|+... ....+.+|++
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~TgH-------taNIFsvKFvP~tnnriv~sgA-----gDk~i~lfdl 124 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SISTGH-------TANIFSVKFVPYTNNRIVLSGA-----GDKLIKLFDL 124 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eeeccc-------ccceeEEeeeccCCCeEEEecc-----CcceEEEEec
Confidence 5678877775 46689999999655432 222111 1123445667777775555432 3445777777
Q ss_pred CCCcEEecC-CC--Cceee---cCC--CCceEECC-eEEEEEeeCCCCCCcceEEEEECCC
Q 017755 178 KADTWRRTR-EF--PYYIL---DDR--CNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKS 229 (366)
Q Consensus 178 ~~~~W~~~~-~~--p~~~~---~~~--~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~ 229 (366)
.+-+=+.++ ++ +.... ..+ .-++.-+| ..+|.+.+++ .|.-+|+..
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG------tirQyDiRE 179 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG------TIRQYDIRE 179 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc------ceeeecccC
Confidence 543222221 11 11100 000 11334455 7889988874 688888865
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=26.77 E-value=6.7e+02 Score=25.27 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=0.0
Q ss_pred eEEEecccceEEeeecCceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEE
Q 017755 94 TSVIGCCHGLLAMFNRRLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVI 173 (366)
Q Consensus 94 ~~~~~s~nGLl~~~~~~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 173 (366)
+.++-=++|.+...+..+.+.+||+.++. |-++.... ......++.++..+..-+-.+ .....+
T Consensus 208 WSv~~Lrd~tI~sgDS~G~V~FWd~~~gT---LiqS~~~h-------~adVl~Lav~~~~d~vfsaGv------d~~ii~ 271 (691)
T KOG2048|consen 208 WSVLFLRDSTIASGDSAGTVTFWDSIFGT---LIQSHSCH-------DADVLALAVADNEDRVFSAGV------DPKIIQ 271 (691)
T ss_pred EEEEEeecCcEEEecCCceEEEEcccCcc---hhhhhhhh-------hcceeEEEEcCCCCeEEEccC------CCceEE
Q ss_pred EEEcCCCc-EEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCC--CCCeeeEEE
Q 017755 174 IYSLKADT-WRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM--KGGFCSQVG 250 (366)
Q Consensus 174 vyss~~~~-W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~~l~ 250 (366)
.......+ |-....-.......+ ++.+-+....-++.+ ..+++...++ .+.+.+. .........
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvr--s~av~~~~l~sgG~d-------~~l~i~~s~~----~~~~~h~~~~~~p~~~~v 338 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVR--SMAVIENALISGGRD-------FTLAICSSRE----FKNMDHRQKNLFPASDRV 338 (691)
T ss_pred EEecCCccceeeeccccCCcccce--eeeeecceEEeccee-------eEEEEccccc----cCchhhhcccccccccee
Q ss_pred EECCEEEEEEecCCCCeEEEEEEeecCC----CCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 251 VLRGCLWINSYYHDEPRCDIWVMKEYGS----QQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 251 ~~~G~L~~v~~~~~~~~l~iW~l~~~~~----~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
.+.++=.+....... .+++|.+.. . ...-.++..+...... .....+++++|+.|.+.+..+ +..|-++
T Consensus 339 ~~a~~~~L~~~w~~h-~v~lwrlGS--~~~~g~~~~~~Llkl~~k~~~---nIs~~aiSPdg~~Ia~st~~~-~~iy~L~ 411 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAH-GVDLWRLGS--VILQGEYNYIHLLKLFTKEKE---NISCAAISPDGNLIAISTVSR-TKIYRLQ 411 (691)
T ss_pred ecCccceEEEEeccc-cccceeccC--cccccccChhhheeeecCCcc---ceeeeccCCCCCEEEEeeccc-eEEEEec
No 177
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.44 E-value=83 Score=30.22 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=43.0
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
+|+-.++..... ++.||-|..... =. +-++.-... .+..+++.+|.++.|-+..++.+.+||+.++++
T Consensus 476 dgrtLivGGeas--tlsiWDLAapTp---ri-kaeltssap----aCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 476 DGRTLIVGGEAS--TLSIWDLAAPTP---RI-KAELTSSAP----ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred CCceEEeccccc--eeeeeeccCCCc---ch-hhhcCCcch----hhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 566666666533 799999985321 01 111111111 355678888988666667777899999988875
No 178
>PRK02889 tolB translocation protein TolB; Provisional
Probab=26.40 E-value=5.6e+02 Score=24.23 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCC
Q 017755 203 AGALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQS 281 (366)
Q Consensus 203 ~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~ 281 (366)
+..+++....... ..|...|+.+.+-..+ ..+... ......-.+.+|.+...... ..+||.++..+..
T Consensus 207 G~~la~~s~~~~~----~~I~~~dl~~g~~~~l~~~~g~~---~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~-- 275 (427)
T PRK02889 207 GTKLAYVSFESKK----PVVYVHDLATGRRRVVANFKGSN---SAPAWSPDGRTLAVALSRDG--NSQIYTVNADGSG-- 275 (427)
T ss_pred CCEEEEEEccCCC----cEEEEEECCCCCEEEeecCCCCc---cceEECCCCCEEEEEEccCC--CceEEEEECCCCC--
Q ss_pred eeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCe---EEEEECCCCcEEEEEEec
Q 017755 282 WSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRC---LHWYNLKDHKQDVIEIRN 337 (366)
Q Consensus 282 W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~---l~~ydl~t~~~~~v~~~~ 337 (366)
..++....- ......+.+||+.+++...... ++.+|+++++.+.+...+
T Consensus 276 ---~~~lt~~~~----~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 276 ---LRRLTQSSG----IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred ---cEECCCCCC----CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC
No 179
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.00 E-value=3e+02 Score=25.43 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=57.6
Q ss_pred ceEEEEECCCceeEE-ECCCCCCCCCeeeEEEEEC-CEEEEEEecCCCCeEEEEEEeecCCCCCeeEEE-EecCCCCCCc
Q 017755 220 NMILAFDLKSEKFYE-VQQPHGMKGGFCSQVGVLR-GCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLC-SFSKMLHETC 296 (366)
Q Consensus 220 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~~l~~~~-G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~~ 296 (366)
..|-+||..+.+... +..-.. ....+.... |++. +....+. .+.+|.++..- .... .++...
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~----sv~di~~~a~Gk~l-~tcSsDl-~~~LWd~~~~~-----~c~ks~~gh~h---- 194 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTD----SVFDISFDASGKYL-ATCSSDL-SAKLWDFDTFF-----RCIKSLIGHEH---- 194 (406)
T ss_pred ceEEEEEccchhhhhhhhcccc----ceeEEEEecCccEE-EecCCcc-chhheeHHHHH-----HHHHHhcCccc----
Confidence 489999999988822 222111 133333333 5444 4443433 48889888521 0111 111111
Q ss_pred ceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE
Q 017755 297 YYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI 333 (366)
Q Consensus 297 ~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v 333 (366)
..+-+.+.+.|+.|+=+..+..+..++..|+...+.
T Consensus 195 -~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 195 -GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred -ceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 466678888888777777777799999999876554
No 180
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=25.87 E-value=3.7e+02 Score=23.48 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred CceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCC
Q 017755 198 NGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM 241 (366)
Q Consensus 198 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 241 (366)
.+..+.|+||.+....... ...-.+||+.+++-..+.+|..-
T Consensus 175 naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 175 NAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred ceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeeeecc
Confidence 4789999999999876432 24778999998887766665443
No 181
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=25.41 E-value=5.1e+02 Score=23.39 Aligned_cols=92 Identities=11% Similarity=0.173 Sum_probs=49.2
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeE
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTE 300 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 300 (366)
.|..+|+.+.+-..+-..... ...+.-.-+.=+++...-+. .+.+|-....- ....++. ...
T Consensus 76 ~vr~~Dln~~~~~~igth~~~----i~ci~~~~~~~~vIsgsWD~-~ik~wD~R~~~------~~~~~d~-------~kk 137 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEG----IRCIEYSYEVGCVISGSWDK-TIKFWDPRNKV------VVGTFDQ-------GKK 137 (323)
T ss_pred eEEEEEecCCcceeeccCCCc----eEEEEeeccCCeEEEcccCc-cEEEEeccccc------ccccccc-------Cce
Confidence 788899987665544332221 12222222222334443332 68888665310 0011110 124
Q ss_pred EEEEEeCCCeEEEEEcCCeEEEEECCCCcE
Q 017755 301 AFAFSKDGDKALIYQHSRCLHWYNLKDHKQ 330 (366)
Q Consensus 301 ~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~ 330 (366)
+.+..-.|+.+++.+.++++++||+++...
T Consensus 138 Vy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 138 VYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred EEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 455555778788878888899999987653
No 182
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=25.14 E-value=5.6e+02 Score=23.79 Aligned_cols=187 Identities=13% Similarity=0.065 Sum_probs=89.9
Q ss_pred ceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCCc
Q 017755 111 LGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPY 190 (366)
Q Consensus 111 ~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p~ 190 (366)
..++++|..+++...+...... .....+.|..+. ++.... ......+.+++.+++..+.+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-----------~~~~~~spDg~~--l~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-----------NGAPAFSPDGSK--LAVSLS--KDGNPDIYVMDLDGKQLTRLTNGPG 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-----------ccceEECCCCCE--EEEEEC--CCCCccEEEEECCCCCEEECCCCCC
Confidence 5789999999876665433211 112344443322 222111 1234566777888877776653221
Q ss_pred eeecCCCCceEECC-eEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEE
Q 017755 191 YILDDRCNGVFIAG-ALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCD 269 (366)
Q Consensus 191 ~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~ 269 (366)
.. ......-+| .+++...... ...|..+|+.+...+.+....... ....+ .-+|+..+...... ....
T Consensus 279 ~~---~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~~--~~~~~-spdg~~i~~~~~~~-~~~~ 347 (417)
T TIGR02800 279 ID---TEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGYN--ASPSW-SPDGDLIAFVHREG-GGFN 347 (417)
T ss_pred CC---CCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCc--cCeEE-CCCCCEEEEEEccC-CceE
Confidence 00 000112255 3555543322 136888898887776654322110 11122 22455444433332 2577
Q ss_pred EEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCC---eEEEEECCCCcEEEE
Q 017755 270 IWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSR---CLHWYNLKDHKQDVI 333 (366)
Q Consensus 270 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~l~~ydl~t~~~~~v 333 (366)
|+.++-.+ . |.+. +..... ... ..+.++|+.|++...+. .+.+++.+.+..+.+
T Consensus 348 i~~~d~~~--~-~~~~--l~~~~~----~~~-p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 348 IAVMDLDG--G-GERV--LTDTGL----DES-PSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred EEEEeCCC--C-CeEE--ccCCCC----CCC-ceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 88877532 2 3322 111111 111 35677888777765432 366666655555444
No 183
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.11 E-value=5.9e+02 Score=26.86 Aligned_cols=84 Identities=14% Similarity=0.270 Sum_probs=47.7
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcc-eeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcE-EEEEEecCCCceee
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQ-DVIEIRNENQSFWD 344 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~-~~v~~~~~~~~~~~ 344 (366)
.+.+|.|.+. +-|+.-- +.+.+ ..+-+-|+++-+.|+=...+..+-+||+..++- +..+-+++ .|+
T Consensus 229 qVKlWrmnet---KaWEvDt------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend---RFW 296 (1202)
T KOG0292|consen 229 QVKLWRMNET---KAWEVDT------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND---RFW 296 (1202)
T ss_pred eeeEEEeccc---cceeehh------hhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC---eEE
Confidence 6999999973 5587421 12211 345566777777455555566799999987763 44333333 444
Q ss_pred eeeeecccccccCCccce
Q 017755 345 AFICMGSLASIDAYTTVG 362 (366)
Q Consensus 345 ~~~y~~sl~~~~~~~~~~ 362 (366)
+..=.++|=-..++-..|
T Consensus 297 ~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EEEecCCcceeeeecCCc
Confidence 444444444444443333
No 184
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=24.76 E-value=2.4e+02 Score=24.57 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=50.3
Q ss_pred eEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCC-CCeEEEEEEeecCCCCCeeEEE-EecCCCCCCcce
Q 017755 221 MILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHD-EPRCDIWVMKEYGSQQSWSKLC-SFSKMLHETCYY 298 (366)
Q Consensus 221 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~-~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~~~~ 298 (366)
.-..||+.+.+++.+..+.+.- +......-+|+|........ ...+++..-...+....|.... .+....+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~F--CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW----- 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTF--CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW----- 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCc--ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc-----
Confidence 5678999999999888776652 12222223688877776543 2245554433322345687654 3444443
Q ss_pred eEEEEEEeCCCeEEEEE
Q 017755 299 TEAFAFSKDGDKALIYQ 315 (366)
Q Consensus 299 ~~~~~~~~~g~~i~l~~ 315 (366)
+.-....+||+++++..
T Consensus 120 YpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGG 136 (243)
T ss_pred cccceECCCCCEEEEeC
Confidence 33345556898555544
No 185
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.60 E-value=27 Score=30.54 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHccCC-ccceeeeeecccccccccCChhH
Q 017755 2 SSLPLDLISDILSRLP-VKPLLRFRCVSKCFCGLIDSQDF 40 (366)
Q Consensus 2 ~~LP~Dll~~Il~rLP-~~~l~r~~~VcK~W~~li~~~~F 40 (366)
.+||.+++.+||.||| -.+|..+..|--.-..++++..-
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~i 242 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRI 242 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHH
Confidence 4799999999999999 66998888876666666655443
No 186
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.84 E-value=5.4e+02 Score=23.21 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=53.0
Q ss_pred CcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEE
Q 017755 180 DTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWIN 259 (366)
Q Consensus 180 ~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v 259 (366)
.+|..............-..|..++.--|+..+.. .|+.-.=..++|+.+++|.............-++...++
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~ 120 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA 120 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEETT------EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCCc------eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE
Confidence 58998762111110000124554454456666542 455555578899999876554322222333334555555
Q ss_pred EecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEE
Q 017755 260 SYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 260 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~ 334 (366)
.. . =.|+.-.+. ..+|..+..=....+ .-+...++|.+|.+.....-+...|+....|+..+
T Consensus 121 ~~-~----G~iy~T~Dg--G~tW~~~~~~~~gs~------~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 121 GD-R----GAIYRTTDG--GKTWQAVVSETSGSI------NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN 182 (302)
T ss_dssp ET-T------EEEESST--TSSEEEEE-S----E------EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE
T ss_pred cC-C----CcEEEeCCC--CCCeeEcccCCccee------EeEEECCCCcEEEEECcccEEEEecCCCccceEEc
Confidence 43 2 256666664 478987553211111 11223345653333333322345555555555543
No 187
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=23.77 E-value=4.5e+02 Score=25.62 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=53.0
Q ss_pred EEEEECCCceeEEE-CCCCCCCCCeeeEEEEE--CCEEEEEEecCCCCeEEEEEEeecCCCCCeeE--EEEecCCCCCCc
Q 017755 222 ILAFDLKSEKFYEV-QQPHGMKGGFCSQVGVL--RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSK--LCSFSKMLHETC 296 (366)
Q Consensus 222 i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~~~--~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~~~~~~~ 296 (366)
|--.|-...+-++| .-|..... .....+.+ +|++ ++..+... .+.+|.... |.. .+.+......+-
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~R-v~~tsC~~nrdg~~-iAagc~DG-SIQ~W~~~~------~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKR-VPVTSCAWNRDGKL-IAAGCLDG-SIQIWDKGS------RTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred EEecCCchhheeEEeeccCCCcc-cCceeeecCCCcch-hhhcccCC-ceeeeecCC------cccccceEeeeccCCCC
Confidence 33333345566666 44444321 12222333 4777 33333333 799998742 443 334443333322
Q ss_pred ceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 297 YYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 297 ~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
...-+.|..+|++++=...+..+-+||++.-+
T Consensus 366 -~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 366 -DITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred -ceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 36668889999944444556669999996543
No 188
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.41 E-value=6.6e+02 Score=24.05 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred cccc-eEEeeecCceEEEEcC-CCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEE
Q 017755 99 CCHG-LLAMFNRRLGMSVFNP-TTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYS 176 (366)
Q Consensus 99 s~nG-Ll~~~~~~~~~~V~NP-~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vys 176 (366)
+-+| .++-...+..+.||+. ..+...+.=...... ...+.|.|.. +.-+-+ ...-.+.+++
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----------v~~~~f~p~g-~~i~Sg------s~D~tvriWd 274 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----------VTSVAFSPDG-NLLVSG------SDDGTVRIWD 274 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----------eEEEEecCCC-CEEEEe------cCCCcEEEEe
Q ss_pred cCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCC-eeeEEEEECCE
Q 017755 177 LKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGG-FCSQVGVLRGC 255 (366)
Q Consensus 177 s~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~-~~~~l~~~~G~ 255 (366)
.+++.=...-..-...-..- ...-+|...+.+..+. .|..+|+.+++......-...+.. ....+....+.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~--~f~~d~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGL--AFSPDGNLLVSASYDG------TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred ccCCeEEEeeeccCCceEEE--EECCCCCEEEEcCCCc------cEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Q ss_pred EEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCc
Q 017755 256 LWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHK 329 (366)
Q Consensus 256 L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~ 329 (366)
.+++....+. .+.+|.+........|.-...- .. +..-.....+|..++....+..+..||+.++.
T Consensus 347 ~~ll~~~~d~-~~~~w~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 347 KYLLSASLDR-TLKLWDLRSGKSVGTYTGHSNL---VR----CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred cEEEEecCCC-eEEEEEccCCcceeeecccCCc---ce----eEecccccCCCCeEEEEeCCceEEEEeCCccc
No 189
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.16 E-value=4.7e+02 Score=23.71 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=39.4
Q ss_pred eEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEE
Q 017755 267 RCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIE 334 (366)
Q Consensus 267 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~ 334 (366)
.+.||.|.. + =+-+-.|....- ..-+++...+.+|-+.+..+.+-.||+..+.+-++.
T Consensus 379 TvKvWdLrN--M---RsplATIRtdS~-----~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 379 TVKVWDLRN--M---RSPLATIRTDSP-----ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred eEEEeeecc--c---cCcceeeecCCc-----cceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 688888875 2 122344443332 444777777777777777777999999999887774
No 190
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=23.12 E-value=3.8e+02 Score=26.77 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=38.2
Q ss_pred eEEEEECCCceeEE----ECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeEEEEEEeec
Q 017755 221 MILAFDLKSEKFYE----VQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEY 276 (366)
Q Consensus 221 ~i~~fD~~~e~~~~----i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~ 276 (366)
.|.-||.+..+|+. +..|.. +.+..+.+.-..|+.++|....+. ++..|.++..
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wapge~~lVsasGDs-T~r~Wdvk~s 132 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAPGESLLVSASGDS-TIRPWDVKTS 132 (720)
T ss_pred ceeeecchhhhcchhhhhhccccc-ccceeEeeccCCCceeEEEccCCc-eeeeeeeccc
Confidence 79999999988871 122221 222355666667999999997776 8999999864
No 191
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=23.00 E-value=5.7e+02 Score=23.16 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=52.1
Q ss_pred CceEE-CCeEEEEEeeCCCC-CCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEE-CCEEEEEEecCCCCeEEEEEEe
Q 017755 198 NGVFI-AGALHWLAARGSVR-TGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVL-RGCLWINSYYHDEPRCDIWVMK 274 (366)
Q Consensus 198 ~~v~~-~G~lyw~~~~~~~~-~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~l~iW~l~ 274 (366)
.++.+ +|.+.+........ .....++..|=..++|+....+..........+.++ +|+|.+...........+..-.
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~ 229 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESR 229 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEc
Confidence 45666 48888776543211 112345555556789987655443111135578888 7999887766522245555444
Q ss_pred ecCCCCCeeEEEEec
Q 017755 275 EYGSQQSWSKLCSFS 289 (366)
Q Consensus 275 ~~~~~~~W~~~~~i~ 289 (366)
| ...+|+......
T Consensus 230 D--~G~tWs~~~~~~ 242 (351)
T cd00260 230 D--MGTTWTEALGTL 242 (351)
T ss_pred C--CCcCcccCcCCc
Confidence 4 457899866543
No 192
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=22.53 E-value=6.8e+02 Score=25.16 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=26.1
Q ss_pred EEEEeCCCeEEEEEcCCeEEEEECCCCcEEEEEE
Q 017755 302 FAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 302 ~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v~~ 335 (366)
+.....|..+|..+.|..++.||+.+-...-+..
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 3344467888888888889999999887777743
No 193
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=21.91 E-value=1.2e+02 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=25.9
Q ss_pred eEEEecccceEEeeecCceEEEEcCCCcceE
Q 017755 94 TSVIGCCHGLLAMFNRRLGMSVFNPTTKKFK 124 (366)
Q Consensus 94 ~~~~~s~nGLl~~~~~~~~~~V~NP~t~~~~ 124 (366)
+.-+.-.||.+|+.+..+..+..+|+|++..
T Consensus 33 ~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 33 FSSVSFAGGRACLSDTAGSVYTVDPLTGRAV 63 (263)
T ss_pred eEEEecCCceEEEecCCCceEEecccccccc
Confidence 5667778999999988888999999997654
No 194
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.45 E-value=7.6e+02 Score=24.19 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEE
Q 017755 253 RGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDV 332 (366)
Q Consensus 253 ~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~ 332 (366)
+|....+...+. ++.|+.|.. .+.=+....+....- ...+++.++|..+......++++.||..+++.+.
T Consensus 454 ~~~~vaVGG~Dg--kvhvysl~g---~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 454 DGSEVAVGGQDG--KVHVYSLSG---DELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred CCCEEEEecccc--eEEEEEecC---CcccceeeeecccCC-----ceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Q ss_pred EEE
Q 017755 333 IEI 335 (366)
Q Consensus 333 v~~ 335 (366)
-+.
T Consensus 524 ~~w 526 (603)
T KOG0318|consen 524 NRW 526 (603)
T ss_pred cee
No 195
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.23 E-value=1.5e+02 Score=19.56 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=13.7
Q ss_pred eEEEEECCCCcEEEEE
Q 017755 319 CLHWYNLKDHKQDVIE 334 (366)
Q Consensus 319 ~l~~ydl~t~~~~~v~ 334 (366)
+++.||++|++++-+.
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 5999999999987763
No 196
>PRK04922 tolB translocation protein TolB; Provisional
Probab=21.21 E-value=7.1e+02 Score=23.55 Aligned_cols=190 Identities=12% Similarity=0.034 Sum_probs=92.8
Q ss_pred CceEEEEcCCCcceEecCCCCCCCccCCCCCCeeEeEEeecCCCCCeeEEEEEEecccceeEEEEEEcCCCcEEecCCCC
Q 017755 110 RLGMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP 189 (366)
Q Consensus 110 ~~~~~V~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~vyss~~~~W~~~~~~p 189 (366)
...++++|..+++...+-..+... ....+.|.. + +++..... +....+.+++..++.-+.+..-.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~-----------~~~~~SpDG-~-~l~~~~s~--~g~~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN-----------GAPSFSPDG-R-RLALTLSR--DGNPEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc-----------cCceECCCC-C-EEEEEEeC--CCCceEEEEECCCCCeEECccCC
Confidence 346889999888876664332111 122333332 2 22222211 23456777888887766654321
Q ss_pred ceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeeeEEEEECCEEEEEEecCCCCeE
Q 017755 190 YYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRC 268 (366)
Q Consensus 190 ~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~l~~~~G~L~~v~~~~~~~~l 268 (366)
.. .......-+|. +++...... ...|..+|+.+.+.+.+...... . ........+..+++...... ..
T Consensus 292 ~~---~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~~-~-~~~~~SpDG~~Ia~~~~~~~--~~ 360 (433)
T PRK04922 292 GI---DTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGNY-N-ARASVSPDGKKIAMVHGSGG--QY 360 (433)
T ss_pred CC---ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCCC-c-cCEEECCCCCEEEEEECCCC--ce
Confidence 10 00011223453 444433221 13688889888777665432111 0 12222222345555544322 45
Q ss_pred EEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcC---CeEEEEECCCCcEEEEEE
Q 017755 269 DIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHS---RCLHWYNLKDHKQDVIEI 335 (366)
Q Consensus 269 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---~~l~~ydl~t~~~~~v~~ 335 (366)
.|++++-.+ .... .+..... ... ..+.+||+.|++.... ..++.+|++.+..+.+..
T Consensus 361 ~I~v~d~~~--g~~~---~Lt~~~~----~~~-p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 361 RIAVMDLST--GSVR---TLTPGSL----DES-PSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred eEEEEECCC--CCeE---ECCCCCC----CCC-ceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 666665321 2232 2221111 122 3577899877776543 359999997776666643
No 197
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.44 E-value=6.5e+02 Score=22.84 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=48.5
Q ss_pred eeEEEEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcc----e----eEEEEEEeCCCeEEEEEcC
Q 017755 246 CSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY----Y----TEAFAFSKDGDKALIYQHS 317 (366)
Q Consensus 246 ~~~l~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~----~----~~~~~~~~~g~~i~l~~~~ 317 (366)
...++...-.|-+++..... .++|+...+...-..|.+.++|.....+... + +.+-.+ ....|.+...+
T Consensus 117 DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~--~~p~iAvgs~e 193 (361)
T KOG2445|consen 117 DVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM--HEPLIAVGSDE 193 (361)
T ss_pred EEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc--cCceEEEEccc
Confidence 33444444334455554333 7999998887656789999988743332211 1 111111 12223333322
Q ss_pred -------CeEEEEECCCCcEEEEE-Eec
Q 017755 318 -------RCLHWYNLKDHKQDVIE-IRN 337 (366)
Q Consensus 318 -------~~l~~ydl~t~~~~~v~-~~~ 337 (366)
-.++-||-..++|.++. +.+
T Consensus 194 ~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 194 DAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred CCccccceEEEEecCCcceeeeehhcCC
Confidence 13777888888898883 444
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=20.44 E-value=5.9e+02 Score=22.32 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=63.4
Q ss_pred CceEEC---CeEEEEEeeCCCCCCcceEEEEECCCceeEEE-CCCCCCCCCeeeEEE--EECCEEEEEEecCCCCeEEEE
Q 017755 198 NGVFIA---GALHWLAARGSVRTGQNMILAFDLKSEKFYEV-QQPHGMKGGFCSQVG--VLRGCLWINSYYHDEPRCDIW 271 (366)
Q Consensus 198 ~~v~~~---G~lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~l~--~~~G~L~~v~~~~~~~~l~iW 271 (366)
+++.++ |.+...+++ ..+-..|+++.+++.. ....+. -..++ +.+|++ ....++. ..+||
T Consensus 118 Nam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHtDY----vH~vv~R~~~~qi--lsG~EDG-tvRvW 183 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGHTDY----VHSVVGRNANGQI--LSGAEDG-TVRVW 183 (325)
T ss_pred ceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCCcce----eeeeeecccCcce--eecCCCc-cEEEE
Confidence 344444 677776644 4899999999999754 443221 11221 222333 3343433 79999
Q ss_pred EEeecCCCCCeeEEEEecCCCCC---C-cceeEEEEEEeCCCeEEEEEcCCeEEEEECCCCcEEEE-EEec
Q 017755 272 VMKEYGSQQSWSKLCSFSKMLHE---T-CYYTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVI-EIRN 337 (366)
Q Consensus 272 ~l~~~~~~~~W~~~~~i~~~~~~---~-~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~~~~~v-~~~~ 337 (366)
-.+... .+..|....-+ . .....+.+..-+.+ -+++..+-.+-.++++..+-..+ .+++
T Consensus 184 d~kt~k------~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 184 DTKTQK------HVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred eccccc------eeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEeccCCCceEEEeccc
Confidence 988521 13333332221 1 11222334433445 55555555688888888776554 4543
No 199
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=1.7e+02 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.425 Sum_probs=30.6
Q ss_pred eeEEEEEEeCCCeEEEEEcCCeEEEEECCCC--cEEEEEE
Q 017755 298 YTEAFAFSKDGDKALIYQHSRCLHWYNLKDH--KQDVIEI 335 (366)
Q Consensus 298 ~~~~~~~~~~g~~i~l~~~~~~l~~ydl~t~--~~~~v~~ 335 (366)
..+.++++++|+-+++...+.++++||++-. -++.+..
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~ 648 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL 648 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh
Confidence 6778899999998999988989999999766 4555543
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=20.24 E-value=7.4e+02 Score=23.40 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=72.3
Q ss_pred eeEEEEEEcCCCcEEecCCCCceeecCCCCceEECCe-EEEEEeeCCCCCCcceEEEEECCCceeEEECCCCCCCCCeee
Q 017755 169 YLEVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGA-LHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCS 247 (366)
Q Consensus 169 ~~~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 247 (366)
...+.+++..++.-+.+...+... ......-+|. +.+....+. ...|..+|+.+.+...+...... . ...
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~-~~~ 297 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-N-TEP 297 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-c-CCE
Confidence 455677777777655554332111 0112233564 444433222 13577888887776555221111 0 122
Q ss_pred EEEEECCE-EEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCCCCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 248 QVGVLRGC-LWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 248 ~l~~~~G~-L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
... -+|+ |++...... ..+||.++..+. ... .+.... . ...+.++|+.|++...+. ++.+|+.
T Consensus 298 ~wS-pDG~~i~f~s~~~g--~~~I~~~~~~~~---~~~--~l~~~~------~-~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 298 SWS-PDGQSILFTSDRSG--SPQVYRMSASGG---GAS--LVGGRG------Y-SAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred EEC-CCCCEEEEEECCCC--CceEEEEECCCC---CeE--EecCCC------C-CccCCCCCCEEEEEcCCC-EEEEECC
Confidence 222 2454 555443333 689999985322 221 122111 1 135678898777766544 8889999
Q ss_pred CCcEEEE
Q 017755 327 DHKQDVI 333 (366)
Q Consensus 327 t~~~~~v 333 (366)
+++.+.+
T Consensus 362 ~g~~~~l 368 (429)
T PRK01742 362 SGSTEVL 368 (429)
T ss_pred CCCeEEe
Confidence 9987765
No 201
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.11 E-value=7.7e+02 Score=23.53 Aligned_cols=135 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEecCCCCceeecCCCCceEECCeEEEEEeeCCCCCCcceEEEEECC-CceeEEECCCCCCCCCeeeEE
Q 017755 171 EVIIYSLKADTWRRTREFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLK-SEKFYEVQQPHGMKGGFCSQV 249 (366)
Q Consensus 171 ~~~vyss~~~~W~~~~~~p~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~-~e~~~~i~~P~~~~~~~~~~l 249 (366)
.+.||++.+.. .++.+|..-.... ++.+...=||++...+. ..|..+|+. .+.|..+.++... +....-
T Consensus 370 ~vkiwdlks~~--~~a~Fpght~~vk--~i~FsENGY~Lat~add----~~V~lwDLRKl~n~kt~~l~~~~--~v~s~~ 439 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVAKFPGHTGPVK--AISFSENGYWLATAADD----GSVKLWDLRKLKNFKTIQLDEKK--EVNSLS 439 (506)
T ss_pred eEEEEEcCCcc--ccccCCCCCCcee--EEEeccCceEEEEEecC----CeEEEEEehhhcccceeeccccc--cceeEE
Q ss_pred EEECCEEEEEEecCCCCeEEEEEEeecCCCCCeeEEEEecCCC-CCCcceeEEEEEEeCCCeEEEEEcCCeEEEEECC
Q 017755 250 GVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKML-HETCYYTEAFAFSKDGDKALIYQHSRCLHWYNLK 326 (366)
Q Consensus 250 ~~~~G~L~~v~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~g~~i~l~~~~~~l~~ydl~ 326 (366)
....|+...+. +. .+.|...+. ...+|.+......-. . ..-+.|.++...+.-...+..+-+|-+.
T Consensus 440 fD~SGt~L~~~---g~-~l~Vy~~~k--~~k~W~~~~~~~~~sg~-----st~v~Fg~~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 440 FDQSGTYLGIA---GS-DLQVYICKK--KTKSWTEIKELADHSGL-----STGVRFGEHAQYLASTSMDAILRLYALT 506 (506)
T ss_pred EcCCCCeEEee---cc-eeEEEEEec--ccccceeeehhhhcccc-----cceeeecccceEEeeccchhheEEeecC
Done!