BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017756
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FWK|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWL|A Chain A, Crystal Structure Of Homoserine Kinase
pdb|1FWL|B Chain B, Crystal Structure Of Homoserine Kinase
pdb|1FWL|C Chain C, Crystal Structure Of Homoserine Kinase
pdb|1FWL|D Chain D, Crystal Structure Of Homoserine Kinase
pdb|1H72|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Hse
pdb|1H74|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H73|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With
Threonine
Length = 296
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 118/271 (43%), Gaps = 10/271 (3%)
Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
V+ AP T ANLG FD G + D + ++ ++ E+ I + + +P
Sbjct: 2 KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVE---AIDDKEIIIE--VDDKNIPTDPD 56
Query: 108 WNCAGIAAISAMKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNEMFGNKLLP 167
N AGI A M +NE+F L
Sbjct: 57 KNVAGIVA-KKMIDDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDK 115
Query: 168 DELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTP 226
+LV E SG HADN+APAI GGF ++ +YEPL++ L+ P +L ++ P
Sbjct: 116 LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEV--LHIPIDFKLDILIAIP 173
Query: 227 EFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286
TK+ R LP VG+ + N +A +V A+ N D G+ + SDK++EP R
Sbjct: 174 NISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGK 233
Query: 287 LIPGMXXXXXXXXXXGAYGCTISGAGPTAVA 317
LIP YG TISG+GP+ +A
Sbjct: 234 LIPNYFKIKEEVKDK-VYGITISGSGPSIIA 263
>pdb|3HUL|A Chain A, Structure Of Putative Homoserine Kinase Thrb From Listeria
Monocytogenes
pdb|3HUL|B Chain B, Structure Of Putative Homoserine Kinase Thrb From Listeria
Monocytogenes
Length = 298
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 179 AKVSGYHADNIAPAIMGGFVLIRSYEPLDL-MRLNFPEKKQLLFVLVTPEFEAPTKKMRA 237
A++ G H DN+APA++G +V+ + D +R FP+ + F+ P+ E T + R
Sbjct: 118 AEIEG-HPDNVAPAVLGNWVVGAKLDGEDFYVRHLFPDCALIAFI---PKAELLTSESRG 173
Query: 238 ALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXX 297
LP + + S A ++AA+L D G+ + D E R+ L+P +
Sbjct: 174 VLPDTLPFKEAVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQLVPHLAQIRDV 233
Query: 298 XXXXGAYGCTISGAGPTAV 316
GAY +SGAGPT +
Sbjct: 234 AKNQGAYAACLSGAGPTVL 252
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKV 82
S++ PAT ANLGP FD G A L Y++L +
Sbjct: 2 SLRIRVPATTANLGPGFDSCGLA---LTLYLTLDI 33
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 302 GAYGCTISGA--GPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMV 348
GAYG ++GA G +A+A+VD E+ + IGE+++ + K KA +
Sbjct: 294 GAYGARLTGAGFGGSAIALVDKED-AETIGEEILREYLKRFPWKARHFI 341
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 165 LLPDELVIAGLESEAKVSGYHADNI-----APAIMGGFVLIRSYEPLDLMRL-NFPEKKQ 218
L PD L++ GLE KVS Y D I APA GGF I + L NF K Q
Sbjct: 67 LFPDTLIL-GLEIRVKVSDYVQDRIRALRAAPA--GGFQNIACLRSNAMKHLPNFFYKGQ 123
Query: 219 L---LFVLVTPEFEAPTKKMRAALPA 241
L F+ P F+ K R P
Sbjct: 124 LTKMFFLFPDPHFKRTKHKWRIISPT 149
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 302 GAYGCTISGA--GPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMV 348
GAYG ++GA G +A+A+VD ++K K IG+ ++ + + + KA V
Sbjct: 296 GAYGARLTGAGFGGSAIALVD-KDKAKTIGDAILREYLAKFSWKAKYFV 343
>pdb|1WXE|A Chain A, E.Coli Nad Synthetase, Amp
pdb|1WXF|A Chain A, E.Coli Nad Synthetase
pdb|1WXG|A Chain A, E.Coli Nad Synthetase, Dnd
pdb|1WXH|A Chain A, E.coli Nad Synthetase, Nad
pdb|1WXI|A Chain A, E.Coli Nad Synthetase, Amp.Pp
Length = 275
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 172 IAGLESEAKVSGYHADNIAPAIMGGFVLI----RSYEPLDLMRLNFPEKKQLLFVLVTPE 227
IAG+ S V HA A AI G F PL RLN + KQLL L PE
Sbjct: 149 IAGMTSGVVVGTDHA---AEAITGFFTKYGDGGTDINPL--YRLNKRQGKQLLAALACPE 203
Query: 228 F---EAPTKKM---RAALPAEVGM 245
+APT + R +LP EV +
Sbjct: 204 HLYKKAPTADLEDDRPSLPDEVAL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,142,183
Number of Sequences: 62578
Number of extensions: 328074
Number of successful extensions: 690
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 10
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)