Query 017756
Match_columns 366
No_of_seqs 255 out of 1619
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02451 homoserine kinase 100.0 1.3E-57 2.8E-62 437.6 36.5 360 1-362 2-368 (370)
2 COG0083 ThrB Homoserine kinase 100.0 4.8E-47 1E-51 347.8 35.1 295 47-360 2-298 (299)
3 PTZ00299 homoserine kinase; Pr 100.0 3.6E-46 7.8E-51 352.6 34.3 298 45-360 4-323 (336)
4 PRK01212 homoserine kinase; Pr 100.0 3E-45 6.4E-50 345.9 33.8 299 46-359 1-301 (301)
5 TIGR00191 thrB homoserine kina 100.0 2.1E-44 4.5E-49 339.8 33.4 300 49-359 1-302 (302)
6 PRK02534 4-diphosphocytidyl-2- 100.0 1.6E-40 3.4E-45 314.8 28.9 291 46-359 1-311 (312)
7 COG1947 IspE 4-diphosphocytidy 100.0 3.4E-41 7.4E-46 307.3 21.9 258 47-334 2-271 (289)
8 PRK03188 4-diphosphocytidyl-2- 100.0 3.2E-40 7E-45 311.2 27.4 281 50-360 2-296 (300)
9 PRK14608 4-diphosphocytidyl-2- 100.0 6.6E-40 1.4E-44 306.7 28.6 260 46-335 4-278 (290)
10 PRK14615 4-diphosphocytidyl-2- 100.0 1E-38 2.2E-43 299.4 25.9 265 47-334 5-286 (296)
11 PRK14616 4-diphosphocytidyl-2- 100.0 3.6E-38 7.7E-43 295.2 26.2 261 46-337 1-275 (287)
12 PRK00128 ipk 4-diphosphocytidy 100.0 5.4E-38 1.2E-42 294.3 27.0 268 49-352 3-282 (286)
13 PRK14613 4-diphosphocytidyl-2- 100.0 4E-38 8.6E-43 295.3 24.8 264 52-338 2-289 (297)
14 COG0153 GalK Galactokinase [Ca 100.0 3.3E-37 7.2E-42 288.0 29.6 304 46-359 21-389 (390)
15 PRK14610 4-diphosphocytidyl-2- 100.0 6.1E-38 1.3E-42 292.3 24.3 256 46-335 1-270 (283)
16 PTZ00298 mevalonate kinase; Pr 100.0 8.8E-38 1.9E-42 297.7 25.8 285 48-340 10-314 (328)
17 PRK14612 4-diphosphocytidyl-2- 100.0 2.7E-37 5.9E-42 287.6 24.8 250 48-335 2-264 (276)
18 PRK14609 4-diphosphocytidyl-2- 100.0 2.4E-37 5.3E-42 286.0 22.2 244 50-326 2-257 (269)
19 PRK03926 mevalonate kinase; Pr 100.0 2.2E-36 4.7E-41 285.6 29.0 284 49-360 2-300 (302)
20 TIGR00154 ispE 4-diphosphocyti 100.0 2.3E-36 4.9E-41 283.2 28.2 258 50-337 3-276 (293)
21 PRK05101 galactokinase; Provis 100.0 8.6E-36 1.9E-40 289.1 32.0 301 49-358 21-381 (382)
22 PRK00650 4-diphosphocytidyl-2- 100.0 1.2E-36 2.6E-41 280.7 23.4 242 50-337 2-259 (288)
23 PRK14614 4-diphosphocytidyl-2- 100.0 5.2E-36 1.1E-40 279.4 27.3 256 46-334 1-268 (280)
24 PRK00555 galactokinase; Provis 100.0 2.7E-35 5.8E-40 283.6 31.2 303 49-359 3-362 (363)
25 TIGR00131 gal_kin galactokinas 100.0 1.1E-35 2.4E-40 289.5 28.6 300 49-357 18-384 (386)
26 TIGR00144 beta_RFAP_syn beta-R 100.0 3E-35 6.6E-40 278.7 26.8 284 50-359 2-324 (324)
27 PRK14611 4-diphosphocytidyl-2- 100.0 3.5E-35 7.5E-40 273.3 25.8 242 50-323 3-256 (275)
28 PRK05322 galactokinase; Provis 100.0 2E-34 4.3E-39 279.8 30.9 302 49-358 20-386 (387)
29 PRK05905 hypothetical protein; 100.0 1.6E-35 3.4E-40 269.8 20.2 237 50-320 2-254 (258)
30 PRK03817 galactokinase; Provis 100.0 6E-34 1.3E-38 274.2 31.7 299 50-359 2-350 (351)
31 PRK00343 ipk 4-diphosphocytidy 100.0 9.2E-35 2E-39 269.1 24.5 245 49-336 7-263 (271)
32 PLN02521 galactokinase 100.0 1.6E-32 3.5E-37 272.0 29.7 308 48-360 48-495 (497)
33 PRK04181 4-diphosphocytidyl-2- 100.0 1.2E-33 2.7E-38 258.5 17.0 233 50-320 2-255 (257)
34 COG1577 ERG12 Mevalonate kinas 100.0 2.3E-32 4.9E-37 253.6 24.4 281 50-340 2-296 (307)
35 TIGR00549 mevalon_kin mevalona 100.0 7.7E-33 1.7E-37 257.8 21.3 257 53-319 1-272 (273)
36 PLN02865 galactokinase 100.0 6.6E-32 1.4E-36 262.0 28.3 302 49-358 31-422 (423)
37 TIGR01220 Pmev_kin_Gr_pos phos 100.0 2.4E-31 5.1E-36 255.9 28.2 290 50-351 2-354 (358)
38 PTZ00290 galactokinase; Provis 100.0 5.4E-31 1.2E-35 258.1 30.8 308 49-359 38-456 (468)
39 PLN02677 mevalonate kinase 100.0 2.6E-30 5.7E-35 248.8 26.6 302 48-360 2-383 (387)
40 COG2605 Predicted kinase relat 100.0 1.5E-29 3.3E-34 226.0 27.2 300 49-360 2-331 (333)
41 PRK13412 fkp bifunctional fuco 100.0 1.9E-29 4E-34 262.4 29.8 301 49-360 610-973 (974)
42 PRK01123 shikimate kinase; Pro 100.0 1.8E-28 3.8E-33 229.0 29.0 260 64-359 18-282 (282)
43 KOG1537 Homoserine kinase [Ami 100.0 2.4E-28 5.2E-33 214.3 13.2 309 46-358 2-352 (355)
44 KOG1511 Mevalonate kinase MVK/ 99.9 2E-25 4.3E-30 203.9 24.4 223 129-361 132-382 (397)
45 TIGR01920 Shik_kin_archae shik 99.9 2.4E-25 5.1E-30 205.3 24.5 204 108-334 45-253 (261)
46 COG1907 Predicted archaeal sug 99.9 4E-24 8.6E-29 191.5 26.9 282 49-359 2-311 (312)
47 TIGR01240 mevDPdecarb diphosph 99.9 4.4E-22 9.5E-27 186.6 27.4 256 65-335 28-303 (305)
48 COG1685 Archaeal shikimate kin 99.9 2.5E-21 5.4E-26 172.1 22.2 271 46-359 2-276 (278)
49 TIGR01219 Pmev_kin_ERG8 phosph 99.8 1.8E-18 3.8E-23 169.1 27.7 244 108-360 87-450 (454)
50 KOG0631 Galactokinase [Carbohy 99.7 1.6E-16 3.5E-21 151.9 20.4 284 47-337 38-459 (489)
51 PLN02407 diphosphomevalonate d 99.7 2.1E-15 4.5E-20 141.3 27.2 271 48-337 3-332 (343)
52 COG3407 MVD1 Mevalonate pyroph 99.7 7.3E-15 1.6E-19 136.5 25.5 218 108-335 71-307 (329)
53 COG4542 PduX Protein involved 99.7 4.6E-15 1E-19 130.7 17.5 195 113-321 65-263 (293)
54 KOG2833 Mevalonate pyrophospha 99.6 9.1E-14 2E-18 125.9 24.3 201 128-337 105-330 (395)
55 PF00288 GHMP_kinases_N: GHMP 99.4 4.9E-13 1.1E-17 97.3 7.7 65 130-196 1-67 (67)
56 PF08544 GHMP_kinases_C: GHMP 99.3 3.1E-12 6.8E-17 97.4 5.1 80 258-337 1-84 (85)
57 KOG4644 L-fucose kinase [Carbo 99.2 2.5E-09 5.3E-14 103.0 20.1 232 116-358 682-942 (948)
58 COG1829 Predicted archaeal kin 99.2 1.2E-08 2.7E-13 91.9 22.6 196 115-329 63-262 (283)
59 COG3890 ERG8 Phosphomevalonate 99.0 2.3E-07 5.1E-12 83.3 21.9 205 140-361 107-335 (337)
60 KOG4519 Phosphomevalonate kina 97.9 0.00031 6.7E-09 65.1 14.4 66 292-363 386-454 (459)
61 PF10509 GalKase_gal_bdg: Gala 97.2 0.00027 5.9E-09 48.2 2.2 24 49-72 14-37 (52)
62 KOG1537 Homoserine kinase [Ami 95.0 0.021 4.6E-07 51.6 3.3 136 19-163 14-157 (355)
63 PF06153 DUF970: Protein of un 60.2 28 0.0006 27.6 5.5 49 291-339 13-67 (109)
64 TIGR00162 conserved hypothetic 54.6 69 0.0015 28.0 7.7 58 117-181 104-161 (188)
65 COG5405 HslV ATP-dependent pro 40.1 33 0.00072 29.1 3.2 39 141-181 124-162 (178)
66 PF03460 NIR_SIR_ferr: Nitrite 38.1 1.4E+02 0.003 20.9 6.1 45 289-334 24-68 (69)
67 cd01434 EFG_mtEFG1_IV EFG_mtEF 37.2 2E+02 0.0044 22.5 7.8 54 107-161 56-112 (116)
68 TIGR00161 conserved hypothetic 31.9 72 0.0016 28.9 4.4 36 146-181 182-217 (238)
69 PF02863 Arg_repressor_C: Argi 29.9 1.1E+02 0.0023 21.9 4.2 43 290-334 27-69 (70)
70 COG3870 Uncharacterized protei 29.2 2.3E+02 0.005 22.1 5.9 48 292-339 14-67 (109)
71 COG1938 Archaeal enzymes of AT 27.9 94 0.002 28.4 4.3 33 149-181 188-220 (244)
72 cd01680 EFG_like_IV Elongation 24.5 3.3E+02 0.0072 21.0 7.3 52 109-161 58-112 (116)
73 PF02762 Cbl_N3: CBL proto-onc 23.0 40 0.00088 24.8 0.8 14 21-34 23-36 (86)
74 PF00382 TFIIB: Transcription 22.8 1.1E+02 0.0023 21.7 3.1 30 146-175 36-65 (71)
75 PF00550 PP-binding: Phosphopa 20.6 1.1E+02 0.0024 20.9 2.7 31 142-172 26-56 (67)
No 1
>PLN02451 homoserine kinase
Probab=100.00 E-value=1.3e-57 Score=437.60 Aligned_cols=360 Identities=74% Similarity=1.137 Sum_probs=305.6
Q ss_pred CceeccCCCCCCCCCCccCCCCCCCC------eeeeecCCCccccccCCCCcceeEEEeeeeecccccChhccccccccc
Q 017756 1 MAICFSSAVKPANHFTVFFNPAPKKP------IFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGL 74 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~aPaki~nlGe~~dv~g~~~~~l 74 (366)
|++||+|..||...+.--....|..+ -.||+++++.. .+|+|||+++++++|||++|||++||++|+|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aPA~~ANLGpgfD~lG~a~d~l 79 (370)
T PLN02451 2 AAICFQSPSKPISSSPSTSKTSPPLFARRSVRRVRCNVSLTGK--VEPEPVFTSVKAFAPATVANLGPGFDFLGCAVDGL 79 (370)
T ss_pred chhhhcCCCCCCCcCCCcCCCCCCccccccceEEEEeeccccc--cCchhhcceEEEEeccchhhcccChhhhhhhhccC
Confidence 68999999999988776665555443 36788888774 67778889999999999999999999999999889
Q ss_pred CCEEEEEEcCCCCCCcEEEEeecCCC-CCCCCCCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHH
Q 017756 75 GDYVSLKVDPSVHPGEVSISEVIGPS-KLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAA 153 (366)
Q Consensus 75 ~~~v~v~~~~~~~~~~i~i~~~~g~~-~~~~~~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~ 153 (366)
||+++++..+....+.+.+.+..|+. .++.++++|++++|++.+++++|....|++|+++|+||.++|||||||+++|+
T Consensus 80 ~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv~~a~~~~~~~~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~ 159 (370)
T PLN02451 80 GDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIAAIATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAA 159 (370)
T ss_pred cCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcHHHHHHHHHHHcCCCCCCEEEEEeCCCCCCCCccHHHHHHHHH
Confidence 99999987541001247765433432 46666458999999999999999744699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH
Q 017756 154 AVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK 233 (366)
Q Consensus 154 l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~ 233 (366)
+.+++++++.+++++||++++.++|.+++|+++||++++++||+++..+.++..+.+++++..++|++++++|++.++|+
T Consensus 160 l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~GG~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~ 239 (370)
T PLN02451 160 AVAVNELFGSPLGKDDLVLAGLESEAKVSGYHADNIAPALMGGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTK 239 (370)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhchhcCCCccchhHhhcCCEEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHH
Confidence 99999999999999999999999999999999999998999999998765444556665542257999999999999999
Q ss_pred HHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccC
Q 017756 234 KMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP 313 (366)
Q Consensus 234 ~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~ 313 (366)
++|+.++....+.+.+.+..++..++.+|.++|++.++++|+||++||+++..++|+++++++.+++.|++|++||||||
T Consensus 240 ~ar~~lp~~~~~~~~v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~~~~P~l~~l~~~~~~~GA~ga~mSGSGp 319 (370)
T PLN02451 240 KMRAALPKEIPMKHHVWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPTRAPLIPGMEAVKKAALEAGAYGCTISGAGP 319 (370)
T ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHhhhCccHHHHHHHHHHCCCeEEEEEccch
Confidence 99998876655555555555567788999999999999999989999999999999999999999999999999999999
Q ss_pred ceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEccc
Q 017756 314 TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSV 362 (366)
Q Consensus 314 ~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~~ 362 (366)
|+|+|++++++++++.+.+++.|.+.++..++++++++|++|+++...+
T Consensus 320 tvfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~Ga~v~~~~ 368 (370)
T PLN02451 320 TAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVGARLVESV 368 (370)
T ss_pred heEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCCCeEEEecC
Confidence 9999998777899999999999877655678999999999999997654
No 2
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-47 Score=347.76 Aligned_cols=295 Identities=41% Similarity=0.613 Sum_probs=254.7
Q ss_pred ceeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCC--CCCCCCCCccHHHHHHHHHHHHhCC
Q 017756 47 TSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGP--SKLSKNPLWNCAGIAAISAMKMLGV 124 (366)
Q Consensus 47 ~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~--~~~~~~~~~n~i~~a~~~~~~~~g~ 124 (366)
..+++++||+.+|||+|||++|.+++ +|+.+.+.... +.+++.. .|. ..+|.++ +|++++++..+++.+|.
T Consensus 2 ~~~~v~aPASSANlGpGFD~lGlAl~-~~~~~~v~~~~----~~~~i~~-~g~~~~~iP~~~-~n~~~~~~~~~~~~~~~ 74 (299)
T COG0083 2 LMMKVRVPASSANLGPGFDVLGLALD-LYNDVVVVEVV----DKFEIEV-EGEGADKIPLDP-ENLVYQAALKFLEALGI 74 (299)
T ss_pred ceEEEEEeecccccCCCccceeeecc-ccCcEEEEEec----CcEEEEE-ecccccCCCCCc-ceeHHHHHHHHHHHhCC
Confidence 46799999999999999999999997 77777665443 3555532 232 3688775 66999999999999998
Q ss_pred CCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecC
Q 017756 125 RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYE 204 (366)
Q Consensus 125 ~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~ 204 (366)
+ .+++|+++|+||.++|||||+|.++|.+.++|++++++|+++++.+++..+|. |+||++++++||+.+.....
T Consensus 75 ~-~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-----HpDNVapa~lGG~~l~~~~~ 148 (299)
T COG0083 75 E-AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-----HPDNVAPAVLGGLVLVEEES 148 (299)
T ss_pred C-ccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-----CCchHHHHhhCCEEEEeecC
Confidence 6 45999999999999999999999999999999999999999999999999995 99999999999988876533
Q ss_pred CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc
Q 017756 205 PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKR 284 (366)
Q Consensus 205 ~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~ 284 (366)
+....+++++ .+|++++++|+++++|+++|+.+|+.+++.|.+++.+++..++.||.++|.+ +++.+.+|.+||++|
T Consensus 149 ~~~~~~v~~~--~~~~~v~~iP~~e~sT~~aR~vLP~~~~~~daV~n~s~~a~lv~al~~~~~~-l~~~~~~D~ihepyR 225 (299)
T COG0083 149 GIISVKVPFP--SDLKLVVVIPNFEVSTAEARKVLPKSYSRKDAVFNLSRAALLVAALLEGDPE-LLRAMMKDVIHEPYR 225 (299)
T ss_pred CceEEEccCC--cceEEEEEeCCccccHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHhccccchhhh
Confidence 4455666655 6899999999999999999999999999999999999999999999999955 555666899999999
Q ss_pred CCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 285 APLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 285 ~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
....|.+.++++.+.+.||+|+.+||||||+|+++++. .++.+.+.+++.+.+ + ..+.+.++..+++|++++.
T Consensus 226 ~~L~P~~~~v~~~a~~~gA~g~~lSGAGPTi~al~~~~-~~e~~~~~~~~~~~~-~-~~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 226 AKLVPGYAEVREAALEAGALGATLSGAGPTVFALADES-DAEKAAALLEELYEQ-G-IKGRVHILALDSDGARVVE 298 (299)
T ss_pred hhhCccHHHHHHHHhhCCceEEEEecCCCeEEEEeccc-hhhHHHHHHHHHHHh-C-CcceEEEEeecCCcceEec
Confidence 99999999999999999999999999999999999865 667777766666655 3 4789999999999987653
No 3
>PTZ00299 homoserine kinase; Provisional
Probab=100.00 E-value=3.6e-46 Score=352.63 Aligned_cols=298 Identities=31% Similarity=0.404 Sum_probs=254.0
Q ss_pred CcceeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCC--CCCCCCCCccHHHHHHHHHHHHh
Q 017756 45 VFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGP--SKLSKNPLWNCAGIAAISAMKML 122 (366)
Q Consensus 45 ~~~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~--~~~~~~~~~n~i~~a~~~~~~~~ 122 (366)
++..+++++||+++|||+|||++|.+++ +|++++++..+. ..+++. |. ..++.+ ..|++++++..+++.+
T Consensus 4 ~~~~~~v~vPATsANlGpGFDsLGlAL~-lyd~v~v~~~~~---~~i~i~---G~~~~~lp~~-~~nlv~~a~~~~~~~~ 75 (336)
T PTZ00299 4 LPKKVVLRVPATTANIGPAYDTLGMALS-IFMELTVEHADA---FSMTVE---GEGSEHISTD-EDNMVVQACRLAFEEY 75 (336)
T ss_pred CCceEEEEEecccccccccHHHHhhhcc-cCcEEEEEECCC---CEEEEe---cCCcCCCCCC-cchHHHHHHHHHHHHh
Confidence 4556899999999999999999999997 999999986442 245443 32 245655 4899999999998888
Q ss_pred CCC-CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhhhhccCCCcchhhHhhhcCeE
Q 017756 123 GVR-SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLL---PDELVIAGLESEAKVSGYHADNIAPAIMGGFV 198 (366)
Q Consensus 123 g~~-~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls---~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~ 198 (366)
+.. ..+++|+++|+||.++|||||||+++|++.++|++++++++ .+||.++|.++|. |+||+++|++||++
T Consensus 76 ~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG-----HpDNVapal~GG~~ 150 (336)
T PTZ00299 76 AHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG-----HPDNAAPAIYGGIQ 150 (336)
T ss_pred cCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-----CcccHHHHHhCCEE
Confidence 742 24899999999999999999999999999999999999995 7999999999984 89999999999998
Q ss_pred EEeecC-CCc-eEEeeCCCcCceEEEEEcCCCC--cchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017756 199 LIRSYE-PLD-LMRLNFPEKKQLLFVLVTPEFE--APTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKAL 274 (366)
Q Consensus 199 ~~~~~~-~~~-~~~l~~~~~~~~~~vl~~p~~~--~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l 274 (366)
+....+ ++. ..+++.+ ++++++++.|++. ++|+++++.+|+.+++.+.+.+.++...++.+|.++|++.+.. +
T Consensus 151 ~~~~~~~ge~~~~~i~~~--~~~~~vv~iP~~~~~~sT~~aR~vLP~~v~~~dav~n~~~~~~lv~al~~~d~~ll~~-~ 227 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTP--PNLSVVLFVPHNKMKANTHVTRNLIPTSVSLEDAVFNISRTSILVLALSTGDLRMLKS-C 227 (336)
T ss_pred EEEecCCCceEEEecCCC--CCeEEEEEECCCCccccHHHHHhhCcccCcHHHHHHhhhHHHHHHHHHHhCCHHHHHh-c
Confidence 876542 333 3366654 6899999999985 5999999999998888888888777788999999999998864 5
Q ss_pred hcCcccccccC-CCCchHHHHHHHHHHcCCeEEEeccccCceEEEec-----------CcchHHHHHHHHHHHHHHcCCC
Q 017756 275 SSDKIVEPKRA-PLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVD-----------NEEKGKVIGEKMVEAFWKEGNL 342 (366)
Q Consensus 275 ~~~~~~~~~~~-~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~-----------~~~~a~~v~~~l~~~~~~~g~~ 342 (366)
.|++||++|. ..+|+++++++.+.+.|++++.||||||++|+|++ +++.++++.++|++.|.+.+ .
T Consensus 228 -~D~lhep~R~~~liP~~~~v~~~~~~~Ga~g~~lSGSGPTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 305 (336)
T PTZ00299 228 -SDKLHEQQRSDALFPHFRPCVKAAREAGAHYAFLSGAGPSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVG-V 305 (336)
T ss_pred -hhcccCcccccccCccHHHHHHHHHHCCCeEEEEEchhhhheEEeccccccccccccchhHHHHHHHHHHHHHHHcC-C
Confidence 6889999995 89999999999999999999999999999999997 24557889999999998776 5
Q ss_pred ceEEEEeeeCCCceEEEc
Q 017756 343 KAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 343 ~~~~~~~~~~~~Ga~i~~ 360 (366)
.+++++++++++|+++..
T Consensus 306 ~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 306 AGRVIITQPSDQGVHLVG 323 (336)
T ss_pred ceEEEEccCCCCCcEEEe
Confidence 799999999999999884
No 4
>PRK01212 homoserine kinase; Provisional
Probab=100.00 E-value=3e-45 Score=345.91 Aligned_cols=299 Identities=41% Similarity=0.584 Sum_probs=247.2
Q ss_pred cceeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCc--EEEEeecCCCCCCCCCCccHHHHHHHHHHHHhC
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGE--VSISEVIGPSKLSKNPLWNCAGIAAISAMKMLG 123 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~--i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g 123 (366)
|+++++++||+.+|||++||++|.+++ +||+++++..... ... +++... ....+|.++++|+++++++.+++.++
T Consensus 1 ~~~~~v~~pat~anlg~gfd~lG~al~-~~d~l~~~~~~~~-~~~~~~~~~~~-~~~~~p~~~~~Nli~~a~~~~~~~~~ 77 (301)
T PRK01212 1 MMMVKVRVPATSANLGPGFDSLGLALS-LYDEVLVGDVVSV-EAEFSIEVIGE-GADKLPLDPEKNLVYQAALKFLEKLG 77 (301)
T ss_pred CceEEEEEecchhhcccChhhhhcccc-CccEEEEEEccCC-CCceEEEEEec-CCCcCCCCCccccHHHHHHHHHHHcC
Confidence 556899999999999999999999995 9999999754310 012 444321 11146655347999999999999998
Q ss_pred CCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeec
Q 017756 124 VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSY 203 (366)
Q Consensus 124 ~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~ 203 (366)
.. .+++|+++|+||.++|||||||+++|++.+++++|+.+++.++|+++|.++|. ++|+++++++||+++....
T Consensus 78 ~~-~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~-----~~ddv~~~l~GG~~~~~~g 151 (301)
T PRK01212 78 KP-PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG-----HPDNVAPALLGGLVLALEE 151 (301)
T ss_pred CC-CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHhCCEEEEEEC
Confidence 75 68999999999999999999999999999999999999999999999999996 5788888899999998622
Q ss_pred CCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccc
Q 017756 204 EPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPK 283 (366)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~ 283 (366)
.++.+++++.+ +++++++++|+..++|+++|+.++...++.+.+.+..++..++.+|.++|++.+++.|+ +.+++.+
T Consensus 152 ~g~~~~~~~~~--~~~~~vlv~p~~~~sT~~a~~~l~~~~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~-~~~~~~~ 228 (301)
T PRK01212 152 NGVISVKIPVF--DDLKWVVAIPNIELSTAEARAVLPKQYSLKDAVFNSSRAALLVAALYTGDYELAGRAMK-DVLHEPY 228 (301)
T ss_pred CceEEEEecCC--CCeEEEEEECCCcCCHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc-hhheHHh
Confidence 36778888765 67899999999999999999987665444455555566777889999999999999984 4456777
Q ss_pred cCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 284 RAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 284 ~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
+...+|+++++++.+++.|+++++||||||++|+|+++.+. +++.+.+++.| .. +..++++++++++.|+++.
T Consensus 229 ~~~~~p~~~~i~~~~~~~Ga~g~~~SGsGptv~~l~~~~~~-~~~~~~l~~~~-~~-~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 229 RAKLIPGFAEVRQAALEAGALGAGISGAGPTVFALCDKEDA-EKVADALQKAF-LQ-GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred HHhhCCCHHHHHHHHHHCCCeEEEEEchhhheeEEeccccH-HHHHHHHHHhh-cc-CCCeEEEEeccCCCceEeC
Confidence 66778999999999999999999999999999999986555 88888888876 22 3578999999999999873
No 5
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=100.00 E-value=2.1e-44 Score=339.81 Aligned_cols=300 Identities=36% Similarity=0.492 Sum_probs=243.4
Q ss_pred eEEEeeeeecccccChhcccccccccCCEEEEEEcC--CCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCC
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDP--SVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRS 126 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~--~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~ 126 (366)
+++++||+++|||+|||++|.+++ +|++++++... ......+.+.. .+...+|.++++|+++++++.+++++|.+.
T Consensus 1 ~~v~vpatsaNlg~GfD~lg~al~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~Nlv~~a~~~~~~~~g~~~ 78 (302)
T TIGR00191 1 FRVKVPASSANLGPGFDVLGAALS-LYLGLTVTDVVAQESDDTEIEAEG-EGVEKIPTEPTDNLIYQVAKRFLDQLGIRM 78 (302)
T ss_pred CEEEEecchhccccChhhhhhhcc-ccceEEEEeeecccCCCceEEEEe-cccccCCCCcccccHHHHHHHHHHHcCCCC
Confidence 378999999999999999999997 99999887421 10101355432 121246665358999999999999998743
Q ss_pred cceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecCCC
Q 017756 127 VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPL 206 (366)
Q Consensus 127 ~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~~~ 206 (366)
.+++|+++|+||.++|||||||+++|++.+++++++++++.++|+++|.++|. ++|+++++++||+++..+. +.
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-----h~Dnv~~~l~GG~~~~~~~-~~ 152 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-----HPDNVAPALLGGFQLAFVE-DD 152 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-----CcccHHHHhccCEEEEEEc-CC
Confidence 58999999999999999999999999999999999999999999999999995 6899988999999987765 34
Q ss_pred ceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC
Q 017756 207 DLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286 (366)
Q Consensus 207 ~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~ 286 (366)
.+.+++.+..+++++++++|+++++|+++++.+++..++.+.+.+..+...+..++.+++++ +++.+.+|++||+++..
T Consensus 153 ~~~~~~~~~~~~~~~vl~~p~~~~sT~~a~~~lp~~~~~~~~v~~~~~~~~l~~al~~~~~~-l~~~~~~d~l~e~~~~~ 231 (302)
T TIGR00191 153 KLEVLKIPIFSKLDWVLAIPNIEVSTAEARAVLPKAYPRQDLVFNLSHLAGLVHAIYQKKPD-LGAIMMKDRIHQPYRES 231 (302)
T ss_pred ceEEEEeCCCCCEEEEEEECCCcccHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHcccccchhhHhh
Confidence 46665543225789999999999999999999887766666666555666778899999865 56666778888999988
Q ss_pred CCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 287 LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 287 ~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
.+|+++++++.+++.|+++++||||||++|+|+++++.++.+.+.+++.+ +.+ ..+++++++++++|++++
T Consensus 232 l~p~l~~i~~~~~~~Ga~g~~lSGsGptv~al~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~Ga~~~ 302 (302)
T TIGR00191 232 LIPNLFKIKQAALEKGAYGITISGSGPTILAMADEEFAEQKEQDLLEVLH-KQG-IEGTVHVLDFDNDGARVE 302 (302)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEchhhhheEEecchhhHHHHHHHHHHHH-hcC-CCeEEEEcccCCCCeEeC
Confidence 89999999999999999999999999999999986656665666665543 333 468999999999999874
No 6
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.6e-40 Score=314.79 Aligned_cols=291 Identities=26% Similarity=0.294 Sum_probs=227.8
Q ss_pred cceeEEEeeeeecccc-----cC---hhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHH
Q 017756 46 FTSVKTFAPATVANLG-----PC---FDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAA 115 (366)
Q Consensus 46 ~~~~~~~aPaki~nlG-----e~---~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~ 115 (366)
|+.++++||||| ||+ ++ +|.++.... ++||+++++..+. +.+.+.+.. ..++.+ +.|++++++
T Consensus 1 ~~~~~~~apaki-NL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~---~~~~~~~~~--~~~~~~-~~n~~~~~~ 73 (312)
T PRK02534 1 MRSYTLIAPAKI-NLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGD---GTIRLHCDH--PQLSTD-DDNLIYRAA 73 (312)
T ss_pred CceEEEEeceEE-EeccccCccCCCCCCceEEEEEECCCCCEEEEEECCC---CcEEEEECC--CCCCCC-chhHHHHHH
Confidence 456789999999 873 32 333333311 4789898876553 456654321 135555 579999999
Q ss_pred HHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhc
Q 017756 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMG 195 (366)
Q Consensus 116 ~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~G 195 (366)
..++++++.+..+++|+++++||.++|||||||+++|++.+++++++++++.++|+++|.++|.++ ++|++|
T Consensus 74 ~~~~~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv--------~~~~~G 145 (312)
T PRK02534 74 QLLRKRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDV--------PFCIAG 145 (312)
T ss_pred HHHHHHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCC--------cEEeEC
Confidence 999999887435899999999999999999999999999999999999999999999999999765 358999
Q ss_pred CeEEEeecCCCceEEeeCCCcCceEEEEE-cCCCCcchHHHHHhCCcC----CChhH----HHHHHHHHHHHHHHHHcCC
Q 017756 196 GFVLIRSYEPLDLMRLNFPEKKQLLFVLV-TPEFEAPTKKMRAALPAE----VGMPH----HIWNCSQAGALVAAVLNGD 266 (366)
Q Consensus 196 G~~~~~~~~~~~~~~l~~~~~~~~~~vl~-~p~~~~sT~~~~~~l~~~----~~~~~----~i~~~~~~~~~~~al~~~d 266 (366)
|+++..+. ++.+++++.+ ++++++++ +|+..++|+++|+.+++. ....+ .+.+..+...++.++.++|
T Consensus 146 G~~~~~~~-g~~~~~~~~~--~~~~~vv~~~p~~~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~d 222 (312)
T PRK02534 146 GTQLCFGR-GEILEPLPDL--DGLGVVLAKYPSLSVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISAKD 222 (312)
T ss_pred CeEEEECC-CCEeEECCCC--CCcEEEEEECCCCCccHHHHHHHHhhhcccccccCcccccccccccchhHHHHhhhccC
Confidence 99988775 5668888765 67888887 799999999998655432 11111 1222334456789999999
Q ss_pred HHHHHHHHhcCcccccccCCCCchHHHHHHHHH-HcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceE
Q 017756 267 PVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAV-EAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAV 345 (366)
Q Consensus 267 ~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~-~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~ 345 (366)
++.+++.|+|+ ++......+|+++++++.++ +.|++++.|||||||+|+|++++++++++.+.+++.+.+.+ ..
T Consensus 223 ~~~~~~~~~n~--l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsGptv~~l~~~~~~a~~~~~~l~~~~~~~~---~~ 297 (312)
T PRK02534 223 PPPIAQLLHND--LEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSGPTCFALFESQEQAEQALEQVREAFADPG---LD 297 (312)
T ss_pred HHHHHHhhhCc--hHHHhHhcChHHHHHHHHHHhccCCCeeEEECcCcceEEEeCCHHHHHHHHHHHHHHhccCc---eE
Confidence 99999988777 66666667899999999998 89999999999999999999876788888888877654432 58
Q ss_pred EEEeeeCCCceEEE
Q 017756 346 SMVKRLDRVGARLV 359 (366)
Q Consensus 346 ~~~~~~~~~Ga~i~ 359 (366)
++++++++.|++|+
T Consensus 298 v~i~~~~n~G~~v~ 311 (312)
T PRK02534 298 AWVCQFISHGIQLE 311 (312)
T ss_pred EEEEEecCCCceec
Confidence 99999999999886
No 7
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3.4e-41 Score=307.30 Aligned_cols=258 Identities=28% Similarity=0.353 Sum_probs=207.7
Q ss_pred ceeEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHH
Q 017756 47 TSVKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIA 114 (366)
Q Consensus 47 ~~~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a 114 (366)
+++++.||||| ||+ ++|+|++.|+ ++|+++++.... +.+.+.. +....+|.+ +|+++||
T Consensus 2 ~~~~~~apAKi-NL~--L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~---~~~~~~~-~~~~~lp~~--~NLv~rA 72 (289)
T COG1947 2 MSTKFPAPAKI-NLF--LHVTGKRADGYHELETLFQFIDLGDELTIRPRDD---DGFIVLG-TFADGLPTD--ENLVYRA 72 (289)
T ss_pred cceEeeccceE-EEE--EEecccCCCCceeeEEEEEEeccCCEEEEEECCC---CCceEec-CCCCCCCCc--chHHHHH
Confidence 35789999999 997 9999999984 566666665543 3444332 111257765 3999999
Q ss_pred HHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhh
Q 017756 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIM 194 (366)
Q Consensus 115 ~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~ 194 (366)
++.+.++++.. .|++|+|+|+||+++|||||||+|||++.+||++|+.+++.+||.+++.++++|+|+ |++
T Consensus 73 a~ll~~~~~~~-~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPf--------fl~ 143 (289)
T COG1947 73 AELLRKRTGIA-GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPF--------FLS 143 (289)
T ss_pred HHHHHHHhCCC-CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcCe--------eee
Confidence 99999999964 689999999999999999999999999999999999999999999999999999874 789
Q ss_pred cCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017756 195 GGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKAL 274 (366)
Q Consensus 195 GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l 274 (366)
||.++.+++ |+++++++-+ +..+++++.|++.+||+++|+ .+..... .. ....+..++...++..+.+..
T Consensus 144 g~tA~a~G~-GE~l~~~~~~--~~~~~vl~~P~v~vsT~~vy~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~ 213 (289)
T COG1947 144 GGTAFAEGR-GEKLEPLEDP--PEKWYVLAKPGVGVSTKEVYK-DPELTRN--TP----KSEPLIAALSLENLKQIAPFL 213 (289)
T ss_pred CCceEEEEc-cceeeECCCC--CCceEEEEeCCCCCChHHHHc-CcCcccc--cC----CchhhhHHHhhhhHhhhcccc
Confidence 999999998 8999999843 578899999999999999999 3332110 00 012223344445555454555
Q ss_pred hcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 275 SSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 275 ~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
.|| +|+.....+|++.+...++.+.|+.+++|||||+|+|+++.+++.++++.+.+.+
T Consensus 214 ~Nd--Le~~~~~~~p~v~~~~~~l~~~ga~~~~mSGSGstvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 214 IND--LEKVALRLYPEVKEALSELLEYGALPARMSGSGSTVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred ccc--hHHHHHHhChHHHHHHHHHhhcccccceEecCCCcEEEEeCChHHHHHHHHHhhc
Confidence 578 9999888999999988888888999999999999999999988889888888775
No 8
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=3.2e-40 Score=311.22 Aligned_cols=281 Identities=26% Similarity=0.290 Sum_probs=225.2
Q ss_pred EEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCC--CCCCCCCCccHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGP--SKLSKNPLWNCAGIAA 115 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~--~~~~~~~~~n~i~~a~ 115 (366)
+++||||| ||+ |++.+++.| ++||+++++..+. ..+.+. +. ..++.+ ++|++++++
T Consensus 2 ~~~a~aKi-Nl~--L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~---~~i~~~---~~~~~~~~~~-~~nl~~~~~ 71 (300)
T PRK03188 2 TVRAPAKV-NLH--LGVGPLRDDGYHELATVFQAVSLYDEVTVTAADV---LSVEVS---GEGADQVPTD-ESNLAWRAA 71 (300)
T ss_pred eEeecceE-EEe--eccCCcCCCCccchHhhheehhhccEEEEEECCC---cEEEEe---cCCccCCCCC-CccHHHHHH
Confidence 67899999 997 999999887 5788888876431 233332 22 135544 589999999
Q ss_pred HHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhc
Q 017756 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMG 195 (366)
Q Consensus 116 ~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~G 195 (366)
+.++++++.. .+++|+++|+||+++|||||||+++|++.+++++++.++++++|+++|.++|.|+ +++++|
T Consensus 72 ~~~~~~~~~~-~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv--------~~~~~G 142 (300)
T PRK03188 72 ELLAEHVGRA-PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDV--------PFALLG 142 (300)
T ss_pred HHHHHHhCCC-CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc--------chhhcC
Confidence 9999999874 6899999999999999999999999999999999999999999999999998665 347899
Q ss_pred CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 017756 196 GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALS 275 (366)
Q Consensus 196 G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~ 275 (366)
|+++..+. ++.++++..+ +++.++++.|+..++|+++|+.++.... .+.+...+.+..++.++.++|++.+++.|+
T Consensus 143 G~~~~~~~-g~~~~~~~~~--~~~~~~lv~p~~~~sT~~~~~~l~~~~~-~~~~~~~~~~~~~~~al~~~d~~~l~~~~~ 218 (300)
T PRK03188 143 GTALGTGR-GEQLAPVLAR--GTFHWVLAFADGGLSTPAVFRELDRLRE-AGDPPRLGEPDPLLAALRAGDPAQLAPLLG 218 (300)
T ss_pred CeEEEEec-CCEEEECCCC--CCcEEEEEeCCCCCCHHHHHHhchhhhc-cccccccccHHHHHHHHHcCCHHHHHHHhh
Confidence 99998765 5667776544 4667777789999999999988764321 111122223567889999999999999998
Q ss_pred cCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCc
Q 017756 276 SDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVG 355 (366)
Q Consensus 276 ~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~G 355 (366)
|+ +|+++...+|+++++++.+++.|++|++||||||++|+|+++++.++++.+.+++ .| ....++++..++.|
T Consensus 219 n~--le~~~~~~~p~l~~l~~~~~~~Galga~lSGsG~tv~~l~~~~~~~~~~~~~l~~----~g-~~~~~~~~~~~~~~ 291 (300)
T PRK03188 219 ND--LQAAALSLRPSLRRTLRAGEEAGALAGIVSGSGPTCAFLCADADSAVDVAAALSG----AG-VCRTVRVATGPVPG 291 (300)
T ss_pred Cc--CHHHHHHhCchHHHHHHHHHHCCCCEEEEEccccceEEEeCCHHHHHHHHHHHHh----cC-cceeEEEeeccccc
Confidence 87 6777766799999999999999999999999999999999876667777666655 33 23678888888999
Q ss_pred eEEEc
Q 017756 356 ARLVG 360 (366)
Q Consensus 356 a~i~~ 360 (366)
++|..
T Consensus 292 ~~~~~ 296 (300)
T PRK03188 292 ARVVS 296 (300)
T ss_pred eEecc
Confidence 99875
No 9
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=6.6e-40 Score=306.74 Aligned_cols=260 Identities=27% Similarity=0.294 Sum_probs=202.6
Q ss_pred cceeEEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHH
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGI 113 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~ 113 (366)
|+.++++||||| ||+ ++++|++.| +++|+++++..+. ..+++... +...+|.+ ++|+++|
T Consensus 4 ~~~~~~~a~aKi-NL~--L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~---~~i~~~~~-~~~~ip~~-~~Nlv~k 75 (290)
T PRK14608 4 MPSLTEFAPAKI-NLA--LHVTGRRADGYHLLESLVAFADVGDRLTLEPAEA---LSLTVSGP-FAAGLGDG-DDNLVLR 75 (290)
T ss_pred CceEEEEeceeE-Eee--eccCCCCCCCCcceeEEEEECCCCcEEEEEECCC---CcEEEeCC-CccCCCCC-CCcHHHH
Confidence 448889999999 997 999999988 4677777765432 34555321 11135654 5899999
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhh
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAI 193 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~ 193 (366)
|++.+++++|....+++|+++|+||+++|||||||+++|++.+++++++.+++.+++.++|..+|.|++ +++
T Consensus 76 a~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv~--------~~l 147 (290)
T PRK14608 76 AARALRARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADVP--------VCL 147 (290)
T ss_pred HHHHHHHHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc--------hhh
Confidence 999999998732358999999999999999999999999999999999999999999999999987653 578
Q ss_pred hcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCC--ChhHHHHHHHHHHHHHHHHHcCCHHHHH
Q 017756 194 MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEV--GMPHHIWNCSQAGALVAAVLNGDPVGLG 271 (366)
Q Consensus 194 ~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~--~~~~~i~~~~~~~~~~~al~~~d~~~lg 271 (366)
+||+++..+. ++.+++++.. +++++++++|+++++|+++|+.++... +..+.+.+..+...+..++.
T Consensus 148 ~gg~~~~~g~-g~~~~~l~~~--~~~~~vv~~p~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 216 (290)
T PRK14608 148 DSRPLIMRGI-GEELTPLPGL--PSLPAVLVNPGVPVATPDVFRALGLRDGPPLPGAPDPLASADALLAALA-------- 216 (290)
T ss_pred cCCeEEEEec-CCEeEECCCC--CCcEEEEECCCCCcChHHHHHhhccccCCcchhhhhhhhhhhhHHHHHH--------
Confidence 9999998875 6778887643 578899999999999999999886432 11111111112222222221
Q ss_pred HHHhcCcccccccCCCCchHHHHHHHHHHc-CCeEEEeccccCceEEEecCcchHHHHHHHHHHH
Q 017756 272 KALSSDKIVEPKRAPLIPGMEAVKKVAVEA-GAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEA 335 (366)
Q Consensus 272 ~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~-Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~ 335 (366)
...|| +|+++...+|+++++++.+++. |++++.||||||++|+|+++++.++++.+.+++.
T Consensus 217 -~~~nd--le~~~~~l~p~l~~i~~~~~~~~Ga~~~~lSGSGstvf~l~~~~~~a~~~~~~l~~~ 278 (290)
T PRK14608 217 -ATRND--LEPPALALAPVIGEVLAALRAQPGALLARMSGSGATCFALFADEAAAEAAAAAIAAA 278 (290)
T ss_pred -hccCc--cHHHHHHcCcHHHHHHHHHHhcCCCCeeEEeccccCeEEEeCCHHHHHHHHHHhHhh
Confidence 13456 7888888899999999999999 9999999999999999998777788888877763
No 10
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1e-38 Score=299.41 Aligned_cols=265 Identities=22% Similarity=0.225 Sum_probs=206.1
Q ss_pred ceeEEEeeeeecccccChhcccccccc-------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHH
Q 017756 47 TSVKTFAPATVANLGPCFDFLGCAVDG-------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGI 113 (366)
Q Consensus 47 ~~~~~~aPaki~nlGe~~dv~g~~~~~-------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~ 113 (366)
..++++||||| ||+ ++++|++.|+ ++|+++++.... ..+++.+ .+. .++ ..+|++++
T Consensus 5 ~~~~~~apaKI-NL~--L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~---~~i~~~~-~~~-~~~--~~~Nlv~~ 74 (296)
T PRK14615 5 DAVTLRSGCKV-NLD--LRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDA---PGITVTC-TIP-DLD--PERNTVTR 74 (296)
T ss_pred CeEEEEecceE-Eec--cccCCcCCCCCcceEEEEEECCCCCcEEEEEECCC---CCEEEEE-CCC-CCC--CCccHHHH
Confidence 35788999999 997 9999999883 467777765432 3455532 121 233 24899999
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhh
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAI 193 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~ 193 (366)
+++.+++.++.. .+++|+++|+||.++|||||||+++|++.+++++++++++.++|.+++..+|.|+++ |+
T Consensus 75 a~~~~~~~~~~~-~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPf--------fl 145 (296)
T PRK14615 75 AYTAFAAATGFR-PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPF--------FL 145 (296)
T ss_pred HHHHHHHHhCCC-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCee--------ec
Confidence 999999999975 689999999999999999999999999999999999999999999999999988753 56
Q ss_pred hcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHH--HHHHHHHHHHHHHHHcCCHHHHH
Q 017756 194 MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHH--IWNCSQAGALVAAVLNGDPVGLG 271 (366)
Q Consensus 194 ~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~--i~~~~~~~~~~~al~~~d~~~lg 271 (366)
+||.++..+. ++.+++++.+. +++++++++|++++||+++|+.++......+. .........++.....+|.+.++
T Consensus 146 ~gg~a~~~G~-Ge~~~~l~~~~-~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (296)
T PRK14615 146 HNVPCRATGI-GEILTPVALGL-SGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAASSRKQNRLRGCLTTEGVADRNPLS 223 (296)
T ss_pred cCCCEEEEee-EeEEEECCCCC-CCcEEEEECCCCCcChHHHHHHhhhhcccccccccccccchHHHHHhhhccchhhhh
Confidence 7999988886 67788886432 56789999999999999999887543211100 00001112233444555654443
Q ss_pred H--HHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 272 K--ALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 272 ~--~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
. .+.|+ +|+++...+|+++++++.+++.|+++++||||||++|+|+++++.++++.+.+++
T Consensus 224 ~~~~l~nd--le~~~~~l~P~l~~~~~~~~~~GAlga~mSGSGptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 224 RGLWLHNS--FEPVVFAAHPELRRLKETLLRHGAAAALMSGSGSSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hhhhcccc--chhHhHHhChHHHHHHHHHHhcCCCEEEEeccCcceEEEeCCHHHHHHHHHHHhh
Confidence 3 35677 8999888999999999999999999999999999999999887788888877766
No 11
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=3.6e-38 Score=295.20 Aligned_cols=261 Identities=24% Similarity=0.284 Sum_probs=207.4
Q ss_pred cceeEEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHH
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGI 113 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~ 113 (366)
|++++++||||| ||+ |++.|++.| ++||+++++.. +.+.+... . ..+|.+ +.|++++
T Consensus 1 ~~~~~~~a~aKi-NL~--L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~-----~~~~i~~~-~-~~~p~~-~~nl~~~ 69 (287)
T PRK14616 1 MQHISVKAFAKI-NLG--LLITGKRPDGYHTLETIFAPINWYDTLTFSPS-----DTISMSCT-N-LDLPVD-DSNLCIR 69 (287)
T ss_pred CCceEEeeceeE-Eee--eecCCCCCCCccceeEEEEEcCCCCEEEEEEC-----CCEEEEeC-C-CCCCCC-ccHHHHH
Confidence 346789999999 997 999999987 46777777642 23444321 1 135544 5799999
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhh
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAI 193 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~ 193 (366)
+++.++++++.. .+++|+++|+||.++|||||||+++|++.+++++++.+++.++|.++|.++|.|++ +++
T Consensus 70 a~~~~~~~~~~~-~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp--------~~l 140 (287)
T PRK14616 70 AAKALQEYAGVS-KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVP--------YFL 140 (287)
T ss_pred HHHHHHHHhCCC-CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc--------eEe
Confidence 999999998874 68999999999999999999999999999999999999999999999999998754 233
Q ss_pred -hcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHc-CCHHHHH
Q 017756 194 -MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLN-GDPVGLG 271 (366)
Q Consensus 194 -~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~-~d~~~lg 271 (366)
+||+++..+. ++.+++++.+ ..+++++++|++.++|+++|+.+++..... ...+..++.++.+ ++++.++
T Consensus 141 ~~gg~~~~~g~-g~~~~~~~~~--~~~~~vvv~P~~~vsT~~a~~~l~~~~~~~-----~~~~~~l~~~l~~~~~~~l~~ 212 (287)
T PRK14616 141 EMKGLAYATGI-GDELEDLQLT--LPFHIVTVFPEEHISTVWAYKNFYRRFERE-----RPDLKTLVRRLCLDGDTSVLP 212 (287)
T ss_pred ccCCcEEEEEc-CceeEECCcC--CCcEEEEECCCCCcCHHHHHHHhhhhcccC-----CchHHHHHHHHhcCCHHHHHH
Confidence 5888877665 5667766544 457899999999999999999887543211 1123445565554 5666654
Q ss_pred HHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHH
Q 017756 272 KALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 272 ~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~ 337 (366)
.+.|| +|+++...+|+++++++.+++.|++++.||||||++|+|+++++.++++.+.+++.|+
T Consensus 213 -~~~nD--~e~~~~~l~p~l~~v~~~~~~~Galg~~lSGSGptv~al~~~~~~a~~i~~~l~~~~~ 275 (287)
T PRK14616 213 -AFEND--FESAVFDHYPAVRKVKDDLLEAGSFFASLSGSGSAVFGLFENEADAEAAAEMMRARYR 275 (287)
T ss_pred -HhcCc--cHHHHHHhChHHHHHHHHHHhCCCCeEEEecccccceEEeCCHHHHHHHHHHhHHhCc
Confidence 45577 7999988999999999999999999999999999999999876778888888887544
No 12
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=5.4e-38 Score=294.26 Aligned_cols=268 Identities=24% Similarity=0.337 Sum_probs=215.2
Q ss_pred eEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
++++||||| ||+ ||++|.+.|+ ++++++++..+. +.+++.... ..++.+ +.|++.++++
T Consensus 3 ~~~~apaki-nl~--l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~---~~~~i~~~~--~~~~~~-~~n~~~~~~~ 73 (286)
T PRK00128 3 ILEKAPAKI-NLS--LDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKE---DGIVVESNN--RYVPND-ERNLAYKAAK 73 (286)
T ss_pred EEEeccceE-EEE--eecCccCCCCcceeheeeEecCCCcEEEEEECCC---CCEEEEeCC--CCCCCC-CCcHHHHHHH
Confidence 778999999 886 8888887773 588888876543 456664321 134544 6899999999
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcC
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGG 196 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG 196 (366)
.+++.++.+ .+++|+++++||.++|||||||+++|++.+++++++.+++.++|.++|.++|.|+ +++++||
T Consensus 74 ~~~~~~~~~-~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv--------~~~~~Gg 144 (286)
T PRK00128 74 LLKERYNIK-QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDV--------PFCIYGG 144 (286)
T ss_pred HHHHhcCCC-CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCC--------CeEeeCC
Confidence 999988874 6899999999999999999999999999999999999999999999999998754 3478999
Q ss_pred eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Q 017756 197 FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSS 276 (366)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~ 276 (366)
+++..+. ++.+++++.+ +++++++++|+..++|+++|+.++.... ....+..++.++.++|++.++++|.|
T Consensus 145 ~~~~~~~-g~~~~~~~~~--~~~~~vv~~p~~~~~T~~~~~~~~~~~~------~~~~~~~~~~~l~~~d~~~~~~~~~n 215 (286)
T PRK00128 145 TALATGR-GEKITPLKSP--PSCWVVLAKPDIGVSTKDVYKNLDLDKI------SHPDTEKLIEAIEEGDYQGICANMGN 215 (286)
T ss_pred eEEEecC-CcccccCCCC--CCcEEEEEcCCCCCCHHHHHhcCccccc------cCcchHHHHHHHhcCCHHHHHHhccC
Confidence 9987765 5566766544 5788999999999999999987753211 01124667889999999999998876
Q ss_pred CcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeC
Q 017756 277 DKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLD 352 (366)
Q Consensus 277 ~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~ 352 (366)
+ +++++...+|+++++++.+++.|++|++||||||++|+|+++++.++++.+.+++.+ ..++++++.
T Consensus 216 ~--l~~~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG~sv~~l~~~~~~~~~i~~~l~~~~-------~~~~~~~~~ 282 (286)
T PRK00128 216 V--LENVTLKKYPEIAKIKERMLKFGADGALMSGSGPTVFGLFDDESRAQRIYNGLKGFC-------KEVYLVRTL 282 (286)
T ss_pred c--HHHHHHhhChHHHHHHHHHHhcCCCeeEEcccCccEEEEeCCHHHHHHHHHHhHhhc-------CcEEEEeee
Confidence 6 687777778999999999999999999999999999999987667777777776532 346666554
No 13
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=4e-38 Score=295.30 Aligned_cols=264 Identities=20% Similarity=0.234 Sum_probs=204.1
Q ss_pred EeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCC--------CCC--CCCCcc
Q 017756 52 FAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPS--------KLS--KNPLWN 109 (366)
Q Consensus 52 ~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~--------~~~--~~~~~n 109 (366)
+||||| ||+ ++|+|++.| +++|+++++..+. +.+.+.+..... .++ .+..+|
T Consensus 2 ~apAKI-NL~--L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 75 (297)
T PRK14613 2 ISPAKI-NLG--LEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPN---GVFELFSTNEIILEKRKLYDQVSERGDIKQN 75 (297)
T ss_pred CCCceE-eee--ecCCCcCCCCcceeeeEEEEeccCCEEEEEECCC---CcEEEEecccccccccccccccCCCCCcccc
Confidence 689999 998 999999998 4677777765432 345554211100 022 122489
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchh
Q 017756 110 CAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNI 189 (366)
Q Consensus 110 ~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~ 189 (366)
+++||++.++++++.. .+++|+|+|+||.++|||||||++++++.++++++++ ...++|.++|.++|.|+|
T Consensus 76 lv~ka~~~~~~~~~~~-~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lGaDvP------- 146 (297)
T PRK14613 76 ILYKTFIKARSLFPEL-PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIGSDVP------- 146 (297)
T ss_pred hHHHHHHHHHHHhCCC-CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhCCccc-------
Confidence 9999999999999874 6899999999999999999999999999999887665 234677789999997654
Q ss_pred hHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCC--hhHHHHHHHHHHHHHHHHHcCCH
Q 017756 190 APAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVG--MPHHIWNCSQAGALVAAVLNGDP 267 (366)
Q Consensus 190 a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~--~~~~i~~~~~~~~~~~al~~~d~ 267 (366)
+++.|+.++.++. |+.+++++.+ +.+ ++++.|+++++|+++|+.+++... ..+...+ .+...++.++.++|+
T Consensus 147 -~~l~G~~a~~~g~-Ge~~~~l~~~--~~~-~vlv~P~~~vsT~~a~~~l~~~~~~~~~~~~~~-~~~~~~~~al~~~~~ 220 (297)
T PRK14613 147 -FFLGEGHAFVTGK-GEIMEEIEVH--KGQ-GILALTPQVMNTGEMYALLKKPLQESASQKNGN-TLSEDLISSLKVGDW 220 (297)
T ss_pred -hhhcCCeEEEecC-CcEEEEcCCC--CCe-EEEEECCCCcChHHHHHhcchhhcccccccccc-ccHHHHHHHHHcCCH
Confidence 3566676666665 6778888654 444 467889999999999998875431 1222212 123457788999999
Q ss_pred HHHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHH
Q 017756 268 VGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWK 338 (366)
Q Consensus 268 ~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~ 338 (366)
+.+...+.|+ +|+++...+|+++++++.+++.|++++.|||||||+|+++++++.++++.+.+++.|.+
T Consensus 221 ~~l~~~l~nd--le~~~~~l~P~~~~i~~~~~~~Ga~~~~mSGSGptvf~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 221 VSLQGRLEND--FEPVAFQLHPELGVLKDKFLEFGSSYCSLTGSGSSMYGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred HHHHHHhccc--chHHHHHhCcHHHHHHHHHHHcCCCEEEEEccccceEEEeCCHHHHHHHHHHHHHhhcc
Confidence 9887777777 79999999999999999999999999999999999999998778888998888876654
No 14
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-37 Score=288.01 Aligned_cols=304 Identities=25% Similarity=0.363 Sum_probs=236.1
Q ss_pred cceeEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCCCCCcEEEEeecCCC---------CC---CCCCCcc
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSVHPGEVSISEVIGPS---------KL---SKNPLWN 109 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~~~~~i~i~~~~g~~---------~~---~~~~~~n 109 (366)
+....++||||++++|||+||.|..+. ++..++.++.+.. ..+++.+.+... ++ +.+.|.|
T Consensus 21 ~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d---~~v~l~s~n~~~~~~~~~~~~d~~~~~~~~W~n 97 (390)
T COG0153 21 EPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDD---GKVRLYSANFGNAGDIFFLLLDIAKEKIDDWAN 97 (390)
T ss_pred CcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccC---ceEEEEeCCCccccceeecchhhcccccchhhh
Confidence 445788999999999999999887443 3555666665543 567766543221 11 2256999
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC---CCc
Q 017756 110 CAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG---YHA 186 (366)
Q Consensus 110 ~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g---~~~ 186 (366)
|+ |++...++..|+...|+++.+.++||.|+||+||+|+.+|++.++.+++++++++.+|+++++..|..+.| +.|
T Consensus 98 Yv-kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~m 176 (390)
T COG0153 98 YV-KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIM 176 (390)
T ss_pred hH-HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchH
Confidence 98 67777778888877899999999999999999999999999999999999999999999999999998776 479
Q ss_pred chhhHhhhc--CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH------------HH---HHh----CC-----
Q 017756 187 DNIAPAIMG--GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK------------KM---RAA----LP----- 240 (366)
Q Consensus 187 D~~a~~~~G--G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~------------~~---~~~----l~----- 240 (366)
||++ +.+| +.+++.+.+..++++.|+|. .++.++|++++++..+. ++ ++. ++
T Consensus 177 DQ~~-s~~G~~~~al~ld~~~l~~~~~~~p~-~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~ 254 (390)
T COG0153 177 DQLA-SAFGKKDHALLLDCRTLEYEPVPFPV-GGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDE 254 (390)
T ss_pred HHHH-HHhCCCCcEEEEEcccCceEEeccCc-cceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHH
Confidence 9997 6888 55655555467889998883 23899999998754221 11 111 10
Q ss_pred ------cCC-------ChhHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC---CCCchHHHHHHHHHH-cC
Q 017756 241 ------AEV-------GMPHH-IWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRA---PLIPGMEAVKKVAVE-AG 302 (366)
Q Consensus 241 ------~~~-------~~~~~-i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~---~~~p~l~~l~~~~~~-~G 302 (366)
... .+..+ +.+.+++.+.+.||+++|+..||++|+.+ |+..+. .++||+|.+++.+.. .|
T Consensus 255 ~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~S--H~slrddyevt~pElD~lve~a~~~~G 332 (390)
T COG0153 255 EFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNES--HESLRDDYEVTCPELDTLVEIALAAGG 332 (390)
T ss_pred HHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHhcccccchhHHHHHHHHHHcCC
Confidence 000 12233 35678899999999999999999999988 555553 468999999999986 47
Q ss_pred CeEEEeccccCce--EEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 303 AYGCTISGAGPTA--VAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 303 a~ga~mSGsG~~~--~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
++|++|||+|+|+ ++|++ .++++++++.+.+.|.+..+.+..++++++ .+|+++.
T Consensus 333 ~~GaRmTGaGfGGc~IaLv~-~~~v~~~~e~v~~~y~~~~g~k~~~yv~~~-~~G~~~~ 389 (390)
T COG0153 333 AYGARMTGAGFGGCVIALVP-NDDVEAVAEAVAEEYEKVTGLKAAFYVVEA-SQGAGVC 389 (390)
T ss_pred cccceecCCCCCceEEEEec-hhhHHHHHHHHHHhHHhhcCccccEEEEec-cCCcccc
Confidence 7999999999986 56776 578999999999888887767889999998 5998864
No 15
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=6.1e-38 Score=292.29 Aligned_cols=256 Identities=22% Similarity=0.260 Sum_probs=198.2
Q ss_pred cceeEEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHH
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGI 113 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~ 113 (366)
|.+++++||||| ||+ +++.|++.| ++||+++++..+. ...+.+. ++..+ ...+|++++
T Consensus 1 m~~~~~~apAKI-NL~--L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~--~~~~~~~---~~~~~--~~~~Nlv~k 70 (283)
T PRK14610 1 MSKFLVKAPAKI-NLF--LHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSK--NRGVEFV---NSLKI--NRYNNTVQR 70 (283)
T ss_pred CCceEEeecceE-Eee--eccCCcCCCCcchhheeeEEcCCCCEEEEEECCC--CCeEEEe---CCCCC--CCCCcHHHH
Confidence 466899999999 997 999999988 5788888875432 1235543 22122 224899999
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhh
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAI 193 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~ 193 (366)
|++.+++.++.. .|++|+++|+||.++|||||||++||++.++|++|+ ++.++|.++|..+++|+|+ |+
T Consensus 71 A~~~l~~~~~~~-~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPf--------fl 139 (283)
T PRK14610 71 AIGLLLRHSPVR-TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPA--------CL 139 (283)
T ss_pred HHHHHHHHhCCC-CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcE--------EE
Confidence 999999999975 589999999999999999999999999999999996 7999999999999999863 78
Q ss_pred hcCeEEEeecCCCceEEeeCCCcCceEEEEEcC-CCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 017756 194 MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTP-EFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGK 272 (366)
Q Consensus 194 ~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p-~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~ 272 (366)
+||.++.++. |+.+++++... ...+++++.| ++++||+++|+.++.... ...... ..+..+++..+..
T Consensus 140 ~g~~a~~~G~-Ge~l~~l~~~~-~~~~~vl~~p~~~~~sT~~vy~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~ 208 (283)
T PRK14610 140 DSKTLFVRGI-GEDILLLPDLS-LPTYVVLVAPKGKFLSTRKVFNKYECKAF-SEPIDN--------LPVAQDDLLELLK 208 (283)
T ss_pred ECCeEEEEec-ccEEEECcccC-CCCeEEEEECCCCccChHHHHHhhccccc-CCcccc--------cccchhHHHHHHH
Confidence 9999999987 78999985311 2345788888 688999999988752110 000000 0122233333334
Q ss_pred HHhcCcccccccCCCCchHHHHHHHHHH-cCCeEEEeccccCceEEEecCcchHHHHHHHHHHH
Q 017756 273 ALSSDKIVEPKRAPLIPGMEAVKKVAVE-AGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEA 335 (366)
Q Consensus 273 ~l~~~~~~~~~~~~~~p~l~~l~~~~~~-~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~ 335 (366)
.+.|| +++++...+|++.++++.+++ .|++++.|||||||+|+++.+++.++++.+.+++.
T Consensus 209 ~~~Nd--le~~~~~l~P~l~~~~~~l~~~~ga~~a~mSGSGsTvf~l~~~~~~a~~~~~~l~~~ 270 (283)
T PRK14610 209 EARND--LLETAISLVPEIEEILFVLESLEGCILSRMSGSGATCFALFEEEEAAEAAARYLKMT 270 (283)
T ss_pred HhcCc--hHHHHHHhChHHHHHHHHHHhcCCCceEEEeCcccceeEEeCCHHHHHHHHHHhhhh
Confidence 45788 888888889999999999876 48899999999999999998777788888877764
No 16
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=8.8e-38 Score=297.74 Aligned_cols=285 Identities=18% Similarity=0.239 Sum_probs=219.9
Q ss_pred eeEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCC--CCccHHHHHHHHHHHH
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKN--PLWNCAGIAAISAMKM 121 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~--~~~n~i~~a~~~~~~~ 121 (366)
..+..+|||++++|||.+++|.... +++|+++++..+. .+.+.+.+.. ..++.. ...|+++++++.+++.
T Consensus 10 ~~~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~--~~~~~~~~~~--~~~~~~~~~~~n~~~~a~~~~~~~ 85 (328)
T PTZ00298 10 TGKHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKG--VPGLQVVDQR--PAVPGYIVEKREEQRKAHQLVLRH 85 (328)
T ss_pred ccCCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccC--CCCceecccc--ccccchHHHhHHHHHHHHHHHHHH
Confidence 3567899999999999999998443 4777778876552 1333332211 112211 2379999999999999
Q ss_pred hCCCC--cceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcCe
Q 017756 122 LGVRS--VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGGF 197 (366)
Q Consensus 122 ~g~~~--~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~ 197 (366)
++... .|++|+|+|+||+++|||||||+++|++.+++++++++++.++|+++|..+|..++|. +.|+.+ +++||+
T Consensus 86 ~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~-~~~Gg~ 164 (328)
T PTZ00298 86 LNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTA-ATYGGL 164 (328)
T ss_pred HhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHH-HHcCCe
Confidence 88642 4899999999999999999999999999999999999999999999999999998874 579875 899999
Q ss_pred EEEeecCC-CceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCc---CCC-hhHH-HH-HHHHHHHHHHHHHcCCHHHH
Q 017756 198 VLIRSYEP-LDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPA---EVG-MPHH-IW-NCSQAGALVAAVLNGDPVGL 270 (366)
Q Consensus 198 ~~~~~~~~-~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~---~~~-~~~~-i~-~~~~~~~~~~al~~~d~~~l 270 (366)
+++++.++ +.+++++++ +++++++++|+.+++|+++++.+.. ..+ ..+. .. ....+.++..+|.++|++.+
T Consensus 165 ~~~~~~~g~~~~~~l~~~--~~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~al~~~d~~~l 242 (328)
T PTZ00298 165 ISYRRVNGKSVFKRIAFQ--QPLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNRLLENYNACVSEAKEALQKGNLFRV 242 (328)
T ss_pred EEEecCCCccceeEecCC--CCCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98775433 356777765 5788999999999999998765422 111 0011 11 11246677889999999999
Q ss_pred HHHHhcCc-ccccccCCCCchHHHHHHHHHHcCCeEEEeccccCc--eEEEecCcchHHHHHHHHHHHHHHcC
Q 017756 271 GKALSSDK-IVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPT--AVAVVDNEEKGKVIGEKMVEAFWKEG 340 (366)
Q Consensus 271 g~~l~~~~-~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~--~~~l~~~~~~a~~v~~~l~~~~~~~g 340 (366)
+++|++++ .++.. ..++|+++++++.+++.|+++++|||||+| +|+|+++++.++++.+.+++.|.+.+
T Consensus 243 g~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~~ 314 (328)
T PTZ00298 243 GELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEAK 314 (328)
T ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhcC
Confidence 99997652 23332 347899999999999999999999999996 68888776788899999998887765
No 17
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.7e-37 Score=287.63 Aligned_cols=250 Identities=25% Similarity=0.363 Sum_probs=200.3
Q ss_pred eeEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHH
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAA 115 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~ 115 (366)
.++++||||| ||+ ||++|++.|+ +||+++++... +.+++.. .+. .+|.+ ++|++++++
T Consensus 2 ~~~~~a~aKi-Nl~--L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~----~~~~i~~-~~~-~~p~~-~~Nli~ka~ 71 (276)
T PRK14612 2 TMERLAPAKV-NLG--LSVLGRREDGYHELHTLMVPLDVGDRLEVEPIA----SGLELRV-LGA-DLPTD-ERNLVYRAA 71 (276)
T ss_pred ceEEeeCcEE-eec--cccCCCCCCCCceeEEEEEECCCCCEEEEEECC----CcEEEEc-CCC-CCCCC-CcccHHHHH
Confidence 5678999999 997 9999999884 48888887543 2355432 222 36655 589999999
Q ss_pred HHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhc
Q 017756 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMG 195 (366)
Q Consensus 116 ~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~G 195 (366)
..+++++|.. .+++|+++|+||+++|||||||+++|++.+++++++.+++ +.+++..+|.|+ ++|++|
T Consensus 72 ~~~~~~~g~~-~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv--------~~~~~G 139 (276)
T PRK14612 72 RAYLDAAGQP-GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADV--------PFFLLG 139 (276)
T ss_pred HHHHHHhCCC-CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCc--------CeeeeC
Confidence 9999999974 5899999999999999999999999999999999998765 666777777654 357999
Q ss_pred CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCC-cCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017756 196 GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALP-AEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKAL 274 (366)
Q Consensus 196 G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~-~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l 274 (366)
|+++..+. ++.+++++. +++.++|++|++.++|+++|+.++ ...+.. .++..++.+|.++|.. .+
T Consensus 140 G~~~~~g~-g~~~~~l~~---~~~~~vv~~P~~~~sT~~a~~~l~~~~~~~~------~~~~~l~~~l~~~d~~----~~ 205 (276)
T PRK14612 140 GAAEARGV-GERLTPLEL---PPVPLVLVNPGVAVSARDAYRWLEPEDFGPE------LDVEAILAALARGEEP----PY 205 (276)
T ss_pred CeEEEEec-CccceEcCC---CCcEEEEECCCCCCCHHHHHHhhccccCCCc------ccHHHHHHHHHhcccc----cc
Confidence 99998875 567888753 378899999999999999999883 332211 1245667788888743 23
Q ss_pred hcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHH
Q 017756 275 SSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEA 335 (366)
Q Consensus 275 ~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~ 335 (366)
.|+ +|+++...+|+++++++.+++.|+++++||||||++|+|+++++.++++.+.+++.
T Consensus 206 ~n~--l~~~~~~~~p~l~~i~~~l~~~Ga~~~~lSGsGptvfal~~~~~~a~~~~~~l~~~ 264 (276)
T PRK14612 206 WNS--LEGPVFARHPELQEVLAALRAAGLRGVLMSGSGSTCFGLAEDAAQAQRAAAALRAR 264 (276)
T ss_pred cCC--cHHHHHHhChHHHHHHHHHHhCCCCEEEEcCcchhhEEEeCCHHHHHHHHHHhHhh
Confidence 456 79999889999999999999999999999999999999998767788888777663
No 18
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.4e-37 Score=286.03 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=191.0
Q ss_pred EEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~ 117 (366)
+++||||| ||+ |+++|++.| +++|+++++..+. +.+++.. ++. .+|.+.++|+++++++.
T Consensus 2 ~~~apaKi-NL~--L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~~~---~~~~~~~-~~~-~~~~~~~~Nlv~~a~~~ 73 (269)
T PRK14609 2 ITFPNAKI-NLG--LNVVEKRPDGYHNLETVFYPIPLTDALEITVRSA---TKTSLTV-SGI-PIPGDPEDNLVVKAYNL 73 (269)
T ss_pred CcCccccE-Eee--eccCCcCCCCcceeeEEEEECCCCcEEEEEEcCC---CcEEEEe-CCC-CCCCCccccHHHHHHHH
Confidence 57899999 997 999999988 4678888875442 3455532 232 35644468999999999
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCe
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGF 197 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~ 197 (366)
++++++. .+++|+++|+||.++|||||||+++|++.+++++++++++.++|.++|..+|.|++ ++++||.
T Consensus 74 ~~~~~~~--~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvp--------ffl~g~~ 143 (269)
T PRK14609 74 LKKDFPL--PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCA--------FFIRNKP 143 (269)
T ss_pred HHHHcCC--CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCce--------EEccCCC
Confidence 9998885 48999999999999999999999999999999999999999999999999987764 3578889
Q ss_pred EEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 017756 198 VLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSD 277 (366)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~ 277 (366)
++..+. |+.+++++.+ .++++++++.|+++++|+++|+.++...+.. .+ .+++ ..+...+...+.|+
T Consensus 144 a~~~G~-Ge~l~~l~~~-~~~~~~vlv~P~~~~sT~~a~~~l~~~~~~~-~~------~~~~----~~~~~~~~~~l~Nd 210 (269)
T PRK14609 144 VYATGI-GDIFSPIDLS-LSGYYIALVKPDIHVSTAEAYAGIKPHKPET-SL------KEII----RQPVEEWKNKLVND 210 (269)
T ss_pred EEEEEe-CCeeEECCCC-CCCCEEEEECCCCCCChHHHHHhhhhcCcch-hh------HHHH----hhHHHHHHhhcCCC
Confidence 888886 6788888642 1467899999999999999999886432210 00 0111 11122233345677
Q ss_pred cccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHH
Q 017756 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGK 326 (366)
Q Consensus 278 ~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~ 326 (366)
+++.....+|+++++++.+++.|+++++||||||++|+|++++++.+
T Consensus 211 --le~~~~~~~p~l~~i~~~l~~~ga~~~~mSGSG~tvf~l~~~~~~~~ 257 (269)
T PRK14609 211 --FEDSVFPKYPEIAEIKEKLYRSGALYAAMSGSGSSVFGIFKKPPNLD 257 (269)
T ss_pred --hHHHHHHcChHHHHHHHHHHhCCCCeEEEeCccceeEEEECChHHcC
Confidence 77777778999999999999999999999999999999998654443
No 19
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=2.2e-36 Score=285.65 Aligned_cols=284 Identities=24% Similarity=0.279 Sum_probs=215.3
Q ss_pred eEEEeeeeecccccChhccccc-----ccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhC
Q 017756 49 VKTFAPATVANLGPCFDFLGCA-----VDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLG 123 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~-----~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g 123 (366)
++++|||||+++|||.|++|.. + +++++++++..+ +.+.+... .. +.+ +|.+++.++++.+.++.+
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI-~~~~~v~i~~~~----~~~~i~~~-~~-~~~--~~~~~~~~~~~~~~~~~~ 72 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAI-DLRTYVRAEFND----DSIYIESD-YG-KTG--EKHPYVSAAIEKMREEAD 72 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEe-cceEEEEEEECC----CceEEecc-cc-ccc--chhHHHHHHHHHHHHhcC
Confidence 6788999999999999976654 4 477777776543 34544321 11 122 345678888878877776
Q ss_pred CCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEe
Q 017756 124 VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIR 201 (366)
Q Consensus 124 ~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~ 201 (366)
. .|++|+++++||.++|||||||+++|++.+++++++.+++.++|+++|..+|..++|. +.|+. ++++||++++.
T Consensus 73 ~--~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~-~~~~Gg~~~~~ 149 (302)
T PRK03926 73 K--DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTY-VSTMGGFVTIP 149 (302)
T ss_pred C--CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCchHHHH-HHhcCCeEEEc
Confidence 5 4899999999999999999999999999999999999999999999999999998874 55654 58999998876
Q ss_pred ecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCC----hh-HHHHH-HHHHHHHHHHHHcCCHHHHHHHHh
Q 017756 202 SYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVG----MP-HHIWN-CSQAGALVAAVLNGDPVGLGKALS 275 (366)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~----~~-~~i~~-~~~~~~~~~al~~~d~~~lg~~l~ 275 (366)
+. + +++. +++++++++|+.+++|+++++.++.... .. ..... ...+..+..++.++|++.+++.|+
T Consensus 150 ~~-~----~l~~---~~~~~vl~~~~~~~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~ 221 (302)
T PRK03926 150 DR-K----KLPF---PECGIVVGYTGSSGSTKELVANVRKLKEEYPELIEPILSSIGKISEKGEELILSGDYVSLGELMN 221 (302)
T ss_pred CC-C----cCCC---CCceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 54 2 3332 4788999999999999998776532111 00 11111 112344567889999999999997
Q ss_pred cCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCC
Q 017756 276 SDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDR 353 (366)
Q Consensus 276 ~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~ 353 (366)
.++.+.+....++|+++++++.+++.|+++++|||||+ ++++++++ ++++++.+.+++ .+ +.++++++++
T Consensus 222 ~~~~~~~~~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~-~~~~~~~~~~~~----~~---~~~~~~~~~~ 293 (302)
T PRK03926 222 INQGLLDALGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAP-EKQSEVATAIKI----AG---GKPIITKITD 293 (302)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEecc-ccHHHHHHHHHh----cC---CeEEEEecCC
Confidence 66555555566789999999999999999999999998 56788864 456666666654 32 6789999999
Q ss_pred CceEEEc
Q 017756 354 VGARLVG 360 (366)
Q Consensus 354 ~Ga~i~~ 360 (366)
+|++|..
T Consensus 294 ~G~~i~~ 300 (302)
T PRK03926 294 EGLRIEE 300 (302)
T ss_pred CeeEEEe
Confidence 9999853
No 20
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=100.00 E-value=2.3e-36 Score=283.25 Aligned_cols=258 Identities=20% Similarity=0.198 Sum_probs=204.2
Q ss_pred EEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~ 117 (366)
.++||||| ||+ +++.+++.| +++|+++++..+. +.+++.+ +...++.+ .|+++++++.
T Consensus 3 ~~~apaKi-NL~--l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~---~~i~~~~--~~~~~~~~--~nlv~~a~~~ 72 (293)
T TIGR00154 3 VFPSPAKL-NLF--LYITGKRPDGYHELQTLMQFLDLGDKIIISVRSD---DDIRLLK--GDFDVPLE--ENLIYRAAQL 72 (293)
T ss_pred eEeecccE-EEE--EecCCcCCCCCcceEEEEEEeccCcEEEEEECCC---CcEEEee--CCCCCCCC--CcHHHHHHHH
Confidence 56899999 665 666666555 4678888765543 4566643 22234433 4999999999
Q ss_pred HHHHhCC---CCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhh
Q 017756 118 AMKMLGV---RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIM 194 (366)
Q Consensus 118 ~~~~~g~---~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~ 194 (366)
++++++. ...+++|+++|+||.++|||||||+++|++.+++++++++++.++|+++|.++|.|++ +|++
T Consensus 73 l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~--------~~~~ 144 (293)
T TIGR00154 73 LKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVP--------FFVS 144 (293)
T ss_pred HHHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc--------eEEE
Confidence 9998872 1358999999999999999999999999999999999999999999999999997653 4789
Q ss_pred cCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCC-cCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 017756 195 GGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALP-AEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKA 273 (366)
Q Consensus 195 GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~-~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~ 273 (366)
||+++..+. ++.+++++.+ +++++++++|++.++|+++|+.++ ..... .....++.++..++++.+...
T Consensus 145 gg~~~~~g~-ge~~~~l~~~--~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~ 214 (293)
T TIGR00154 145 GHAAFATGV-GEIITPFEDP--PEKWVVIAKPHVSISTPVVYQAYKLPRNTP-------KRAKEWLKKISLECLQLLDSN 214 (293)
T ss_pred CCeEEEEec-CcEEEECCCC--CCcEEEEEcCCCCcChHHHHHhhhhcccCc-------chhHHHHHHHhhccHHHHhhh
Confidence 999998876 5677777644 578899999999999999999875 21100 012335566667777777666
Q ss_pred HhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHH
Q 017756 274 LSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 274 l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~ 337 (366)
+.|+ ++......+|+++++++.+++.|+++++|||||+++|+|+++++.++++.+.+++.+.
T Consensus 215 ~~nd--le~~~~~~~p~l~~i~~~l~~~Ga~~a~mSGSG~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 215 GLND--LEKVALKRHTEVAQALNWLLEYGLAPERLSGSGACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred hcCc--cHHHHHhcCHHHHHHHHHHHhCCCCeEEEeccccceEEEeCCHHHHHHHHHHhHHHhh
Confidence 7788 8888777899999999999999999999999999999999877778888887776554
No 21
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=8.6e-36 Score=289.05 Aligned_cols=301 Identities=18% Similarity=0.220 Sum_probs=224.5
Q ss_pred eEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCCCCCcEEEEeecCCC---------CC---CCCCCccHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSVHPGEVSISEVIGPS---------KL---SKNPLWNCAG 112 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~~~~~i~i~~~~g~~---------~~---~~~~~~n~i~ 112 (366)
+.++|||||+++|||.|+.|..+. ++++++.+...+. +.+++.+...+. .+ +...|.|++.
T Consensus 21 ~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~---~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~w~~yv~ 97 (382)
T PRK05101 21 HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDD---RIVRVIAADYDNQQDEFSLDAPIVPHPEQQWANYVR 97 (382)
T ss_pred eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCC---CEEEEEECCCCCCceEEecCcccccCCCCchHHHHH
Confidence 678999999999999998777443 3666666665443 556664322110 01 1234889998
Q ss_pred HHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---Ccchh
Q 017756 113 IAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HADNI 189 (366)
Q Consensus 113 ~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D~~ 189 (366)
.++..+..+... ..|++|.+.++||+|+|||||||+++|++.|++++++.++++++|++++..+|..++|. ++||+
T Consensus 98 ~~~~~l~~~~~~-~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~ 176 (382)
T PRK05101 98 GVVKHLQERNPD-FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQL 176 (382)
T ss_pred HHHHHHHHhCCC-CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 777766554433 36999999999999999999999999999999999999999999999999999988873 59999
Q ss_pred hHhhhcC--eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCc-------chHH-----HHH-----hCCcC--------
Q 017756 190 APAIMGG--FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEA-------PTKK-----MRA-----ALPAE-------- 242 (366)
Q Consensus 190 a~~~~GG--~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~-------sT~~-----~~~-----~l~~~-------- 242 (366)
+ +.+|| .+++...++...++++++ +++.++|++++.+. +|.. +.+ .+.+.
T Consensus 177 ~-s~~G~~~~~~~~d~~~~~~~~~~~~--~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~ 253 (382)
T PRK05101 177 I-SALGKKDHALLIDCRSLETKAVPMP--EGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAV 253 (382)
T ss_pred H-HHcCCCCeEEEEEcCCCceEEeeCC--CCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHH
Confidence 8 78886 333333334567778776 68899999999876 4543 111 11100
Q ss_pred ----CC----hh-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCccccc-ccCCCCchHHHHHHHHHHc-CC-eEEEecc
Q 017756 243 ----VG----MP-HHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEP-KRAPLIPGMEAVKKVAVEA-GA-YGCTISG 310 (366)
Q Consensus 243 ----~~----~~-~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~-~~~~~~p~l~~l~~~~~~~-Ga-~ga~mSG 310 (366)
.+ +. +.+.+.+++.+...+|+++|+..||++|+++|...+ ....++|++|.+++.+++. |+ .|+||||
T Consensus 254 ~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltG 333 (382)
T PRK05101 254 AAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTG 333 (382)
T ss_pred HhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEecc
Confidence 00 11 113344578888999999999999999999854332 2446889999999999996 97 4889999
Q ss_pred ccCceE--EEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEE
Q 017756 311 AGPTAV--AVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 311 sG~~~~--~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i 358 (366)
+|.|++ +|++ .+.++++.+.+.+.|.+..+.+..++++++ .+|+++
T Consensus 334 aG~GG~~ial~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~Ga~~ 381 (382)
T PRK05101 334 GGFGGCIVALVP-EELVEAVRQAVAEQYEAKTGLKETFYVCKA-SQGAGQ 381 (382)
T ss_pred CCCccEEEEEEc-HHHHHHHHHHHHHHHHHhhCCCCeEEEEec-CCCccc
Confidence 999865 4555 567889999999998877666778999998 689875
No 22
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.2e-36 Score=280.74 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=192.1
Q ss_pred EEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~ 117 (366)
.++||||| ||+ ++++|+|.| +++|+++++.... ..+++.. . ..++. .+|+++||++.
T Consensus 2 ~~~apAKI-NL~--L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~~~---~~i~i~~--~-~~~~~--~~Nlv~ra~~~ 70 (288)
T PRK00650 2 HFFSPAKL-NLF--LQLLGKREDGFHEIVTRYQAIAFGDQLSLSISSR---DSLQVIN--A-CHLET--PSNSIWKSVAL 70 (288)
T ss_pred CccccceE-Eee--eccCCcCCCCCcceeEEEEEcCCCCEEEEEECCC---CcEEEeC--C-CCCCc--cccHHHHHHHH
Confidence 46799999 998 999999998 4677777765432 3454431 1 12332 48999999999
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCe
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGF 197 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~ 197 (366)
++++++.. .+++|+++|+||+++|||||||++||++.++|++|+++++.++|.++|.++|.|+| +|+.||.
T Consensus 71 l~~~~g~~-~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvP--------ffl~~g~ 141 (288)
T PRK00650 71 FRRYTGIT-TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTP--------FFFSTGS 141 (288)
T ss_pred HHHHhCCC-CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcch--------hhhcCce
Confidence 99999975 58999999999999999999999999999999999999999999999999999875 3567799
Q ss_pred EEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 017756 198 VLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSD 277 (366)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~ 277 (366)
++..+. |+.+++++.+ ++++++++.|++.+||+++|+.++.... . ....+ ..+.||
T Consensus 142 a~~~G~-Ge~l~~~~~~--~~~~~vlv~P~~~vsT~~ay~~~~~~~~--~----------~~~~~---------~~~~Nd 197 (288)
T PRK00650 142 ALGVGR-GEKIIALEES--VSDRYVLYFSSEGVLTSRAFAYVQPSDC--S----------SRKNL---------EYTQND 197 (288)
T ss_pred EEEEec-CCEEEECcCC--CCceEEEEeCCCCCChHHHHHhhccccc--c----------hhhHh---------ccCCCc
Confidence 998887 7788888644 5678999999999999999987532110 0 00001 123577
Q ss_pred cccccccCCCCchHHHHHHHHHHcCCe---EEEeccccCceEEEecCcchHHHHH-HHHHHHHH
Q 017756 278 KIVEPKRAPLIPGMEAVKKVAVEAGAY---GCTISGAGPTAVAVVDNEEKGKVIG-EKMVEAFW 337 (366)
Q Consensus 278 ~~~~~~~~~~~p~l~~l~~~~~~~Ga~---ga~mSGsG~~~~~l~~~~~~a~~v~-~~l~~~~~ 337 (366)
+|+.....+|++.++++.+.+.|+. .+.|||||+++|+++++++.++++. +.+++.+.
T Consensus 198 --le~~~~~~~p~i~~~~~~l~~~~~~~~~~~~MSGSGst~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 198 --LEKPVFRLRLDLKEKKHWLESLWAELPVHVGLTGSGATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred --hHHHHHHhChHHHHHHHHHHhccccCCCeEEEeCcccCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 8888888899999999999986432 4789999999999999877888877 77776654
No 23
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=5.2e-36 Score=279.37 Aligned_cols=256 Identities=25% Similarity=0.331 Sum_probs=197.4
Q ss_pred cceeEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHH
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGI 113 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~ 113 (366)
|++++++||||| ||| ||++|++.|+ +||+++++..+. +.+++.. +...+|.+ ++|++++
T Consensus 1 m~~~~~~apaKi-Nl~--L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~---~~~~i~~--~~~~~p~~-~~nl~~~ 71 (280)
T PRK14614 1 MKKLTLKAPAKV-NYR--LDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDG---PGIRVTC--GREGVPDG-PGNIAWR 71 (280)
T ss_pred CcceEEeecceE-Eee--eccCCCCCCCcChhheEeEECCCCeEEEEEECCC---CCEEEEe--CCCCCCCC-CCcHHHH
Confidence 445788999999 998 9999999985 488888876542 3466642 22246655 5899999
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhh
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAI 193 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~ 193 (366)
+++.+++.++.. .+++|+++|+||.++|||||||+++|++.+++++++.+++++++.+++..+|.|++ +++
T Consensus 72 a~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~--------~~l 142 (280)
T PRK14614 72 AADALLDLSGRE-VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVP--------FFI 142 (280)
T ss_pred HHHHHHHHhCCC-CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc--------eee
Confidence 999999999874 58999999999999999999999999999999999999999999999999887653 468
Q ss_pred hcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 017756 194 MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKA 273 (366)
Q Consensus 194 ~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~ 273 (366)
+||.++..+. ++.+++++.+ +++++++++|++.++|+++|+.++........... ... .+.+.+..+
T Consensus 143 ~gg~~~~~g~-ge~~~~l~~~--~~~~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~ 209 (280)
T PRK14614 143 FKKTALAEGI-GDKLTAVEGV--PPLWVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIP-RFF---------GSVAEVCAL 209 (280)
T ss_pred eCCcEEEEEc-CceeEECCCC--CCcEEEEECCCCCCCHHHHHhcccccccCcchhhh-hhh---------hhHHHHhhh
Confidence 9999988775 5677777654 57889999999999999999876532110000000 000 011122223
Q ss_pred HhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 274 LSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 274 l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
+.|| ++..+...+|+++++++.+++.|+++++||||||++|+|+++.+.++++.+.+++
T Consensus 210 ~~nd--le~~~~~~~p~l~~i~~~~~~~Galga~lSGSG~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 210 LSND--LESVTIGRFPVIGEIKEELLAAGARGSLMSGSGSTVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred cccC--cHHHHHhcChHHHHHHHHHHhCCCCEEEEeccccceEEEeCCHHHHHHHHHHhhh
Confidence 3455 5555555689999999999999999999999999999999876667777777766
No 24
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=2.7e-35 Score=283.60 Aligned_cols=303 Identities=21% Similarity=0.225 Sum_probs=223.3
Q ss_pred eEEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC---------CCCCCCCccHHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS---------KLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~---------~~~~~~~~n~i~~a~~~ 117 (366)
++++||||++++|||.|+++..+. ++..++++...++ +++.+++.+...+. ......|.||+ +++..
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~-~~~~i~i~s~~~~~~~~~~~~~~~~~~~~w~~y~-~gv~~ 80 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPE-HTDAITASSDRADGSARIPLDTTPGQVTGWAAYA-AGVIW 80 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEEC-CCCEEEEEECCCCCceEEecCCCCCCCcchHHHH-HHHHH
Confidence 678999999999999999766443 2334444544444 22567665432211 00113488898 45555
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---CcchhhHhhh
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HADNIAPAIM 194 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D~~a~~~~ 194 (366)
.+++.+.+..|++|.+.++||.++|||||||+.+|++.|++++++.++++++|+++|+.+|..++|. .+||++ +++
T Consensus 81 ~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~a-s~~ 159 (363)
T PRK00555 81 ALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLA-ALF 159 (363)
T ss_pred HHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHH-HHh
Confidence 5666676446999999999999999999999999999999999999999999999999999988873 489998 789
Q ss_pred cCe---EEEeecCCCceEEeeCCCc-CceEEEEEcCCCCcchH--------H----HHHhCC-----cC-----------
Q 017756 195 GGF---VLIRSYEPLDLMRLNFPEK-KQLLFVLVTPEFEAPTK--------K----MRAALP-----AE----------- 242 (366)
Q Consensus 195 GG~---~~~~~~~~~~~~~l~~~~~-~~~~~vl~~p~~~~sT~--------~----~~~~l~-----~~----------- 242 (366)
||. ++++.. +..+++++++.. ..+.+++++++.+..|. + +.+.+. +.
T Consensus 160 G~~~~~~~~d~~-~~~~~~v~~~~~~~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~ 238 (363)
T PRK00555 160 GAPKTALLIDFR-DLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAI 238 (363)
T ss_pred CCCCeEEEEEcC-CCcEEEeccCCCcCceEEEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhc
Confidence 964 444443 456777776521 23568999888766431 1 111111 00
Q ss_pred -----CChhHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc---CCCCchHHHHHHHHHHcCCeEEEeccccC
Q 017756 243 -----VGMPHH-IWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKR---APLIPGMEAVKKVAVEAGAYGCTISGAGP 313 (366)
Q Consensus 243 -----~~~~~~-i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~---~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~ 313 (366)
..+..+ +.+.+++..++.+|.++|++.|+++|+.+ |+..+ ..++|+++.+++.+++.|++|++|||+|+
T Consensus 239 ~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~--h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~ 316 (363)
T PRK00555 239 ADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTAS--HASMRDDFEITTERIDLIADSAVRAGALGARMTGGGF 316 (363)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh--hHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCc
Confidence 001122 34556788899999999999999999977 55554 34689999999999999999999999975
Q ss_pred c--eEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 314 T--AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 314 ~--~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
| +++|++ .+.++++.+.+++.|.+.++.+..++.+++ .+|+++.
T Consensus 317 Gg~vial~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~-~~g~~~~ 362 (363)
T PRK00555 317 GGCVIALVP-ADRAEDVADTVRRAAVTAGYPEPAVSRTYA-APGAGEC 362 (363)
T ss_pred cCeEEEEEc-hhHHHHHHHHHHHHHHHccCCCCcEEEEec-CCCcccC
Confidence 4 566776 456889999999999988777889999998 6898764
No 25
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=1.1e-35 Score=289.51 Aligned_cols=300 Identities=19% Similarity=0.210 Sum_probs=220.9
Q ss_pred eEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCCCCCcEEEEeecCCC-------CCCC-----CCCccHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSVHPGEVSISEVIGPS-------KLSK-----NPLWNCAG 112 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~~~~~i~i~~~~g~~-------~~~~-----~~~~n~i~ 112 (366)
++++|||||+++|||.|+.|..+. +.+++++++..+. +.+++.+...+. +.+. ..|.|++.
T Consensus 18 ~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~ 94 (386)
T TIGR00131 18 FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDD---KNVRIYLANADNKFAERSLDLPLDGSEVSDWANYFK 94 (386)
T ss_pred EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCC---CeEEEEECCCCCcceEEECCCCCCCCCCCCcHhHHH
Confidence 678999999999999998877543 3566666655443 556665432210 1111 24668887
Q ss_pred HHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---Ccchh
Q 017756 113 IAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HADNI 189 (366)
Q Consensus 113 ~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D~~ 189 (366)
.++..+.+.......|++|.|.++||.++|||||||.++|++.|++.++++++++++|++++..+|..++|. ++||+
T Consensus 95 ~~~~~~~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~ 174 (386)
T TIGR00131 95 GVLHVAQERFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQA 174 (386)
T ss_pred HHHHHHHHhcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHH
Confidence 666666655442235999999999999999999999999999999999999999999999999999988874 69998
Q ss_pred hHhhhcC---eEEEeecCCCceEEeeCCCcC-ceEEEEEcCCCCcchHHH-H-----------HhC--------CcC---
Q 017756 190 APAIMGG---FVLIRSYEPLDLMRLNFPEKK-QLLFVLVTPEFEAPTKKM-R-----------AAL--------PAE--- 242 (366)
Q Consensus 190 a~~~~GG---~~~~~~~~~~~~~~l~~~~~~-~~~~vl~~p~~~~sT~~~-~-----------~~l--------~~~--- 242 (366)
+ +.+|| .++++.. +...++++++ + ++.++|++|+.+.+|.+. | +.+ .+.
T Consensus 175 ~-s~~G~~~~~l~~~~~-~~~~~~~~~~--~~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~ 250 (386)
T TIGR00131 175 A-SVLGKEDHALLVECR-SLKATPFKFP--QLGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNE 250 (386)
T ss_pred H-HHhccCCcEEEEEcC-CCceeeecCC--CCCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHH
Confidence 6 78997 3444433 4566777776 4 789999999988776411 1 111 100
Q ss_pred -CC---------------hhH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCchHHHHHHHH-HHcCC
Q 017756 243 -VG---------------MPH-HIWNCSQAGALVAAVLNGDPVGLGKALSSDKIV-EPKRAPLIPGMEAVKKVA-VEAGA 303 (366)
Q Consensus 243 -~~---------------~~~-~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~-~~~~~~~~p~l~~l~~~~-~~~Ga 303 (366)
.. +.. .+.+..++.+++.+|.++|++.||++|+.+|.. ......++|+++.+++.+ ++.||
T Consensus 251 ~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GA 330 (386)
T TIGR00131 251 YFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGS 330 (386)
T ss_pred HHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCC
Confidence 00 011 123455678899999999999999999987422 222357889999999875 56799
Q ss_pred eEEEeccccCce--EEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceE
Q 017756 304 YGCTISGAGPTA--VAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGAR 357 (366)
Q Consensus 304 ~ga~mSGsG~~~--~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~ 357 (366)
+|+||||+|+|+ ++|++ ++.++++.+++.+.|.+..+.++.++++++. +|++
T Consensus 331 lGakltGaG~GG~vial~~-~~~~~~v~~~~~~~y~~~~~~~~~~~~~~~~-~Ga~ 384 (386)
T TIGR00131 331 GGSRMTGAGFGGCTVHLVP-NENVDKVRQAVADKYPKKTGLELTFYVIVSK-PGAG 384 (386)
T ss_pred cEEEEecCCCceEEEEEEc-HHHHHHHHHHHHHHHHHhhCCCCcEEEEEEC-CCcC
Confidence 999999999865 66776 5678899999999996665567889999985 5876
No 26
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=100.00 E-value=3e-35 Score=278.65 Aligned_cols=284 Identities=22% Similarity=0.277 Sum_probs=219.1
Q ss_pred EEEeeeeecccccChh----------cccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFD----------FLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAM 119 (366)
Q Consensus 50 ~~~aPaki~nlGe~~d----------v~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~ 119 (366)
++++|+|+ ++|- +| .+|.++++.+++++++..+. ..+.+...++. .++.+...|+++++++.++
T Consensus 2 ~v~~~~rl-H~g~-~d~~~~~gr~~Gg~G~al~~~~~~v~v~~~~~---~~v~~~~~~g~-~l~~~~~~n~~~~~~~~~~ 75 (324)
T TIGR00144 2 IINTPSRI-HLTL-IDLNGSIGRVDGGVGLALEEPEIVIGLKESDD---MGVEFTSHAEG-KLGEEYRRSRIMEAARKTL 75 (324)
T ss_pred eecccccc-cccc-cCCCCccCccccceEEEEeCCcEEEEEEECCC---ceEEecccccc-cccchhHHHHHHHHHHHHH
Confidence 68899999 8883 33 45667777888888887653 45665443343 3455556899999999999
Q ss_pred HHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEE
Q 017756 120 KMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVL 199 (366)
Q Consensus 120 ~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~ 199 (366)
+.+|. .+++|+++++||.++|||||||.++|++.|+|++++++++.+||++++.+.|. +.|+++++++||+++
T Consensus 76 ~~~g~--~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~-----s~~~va~~~~GG~vv 148 (324)
T TIGR00144 76 KHIGS--EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT-----SGIGVASFEDGGFIV 148 (324)
T ss_pred HHhCC--CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC-----CccceeeeeeCCEEE
Confidence 99986 48999999999999999999999999999999999999999999999998775 567788899999998
Q ss_pred Eeec---C--------------CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHh--CCcC--CChhHHHHHHHHH--H
Q 017756 200 IRSY---E--------------PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAA--LPAE--VGMPHHIWNCSQA--G 256 (366)
Q Consensus 200 ~~~~---~--------------~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~--l~~~--~~~~~~i~~~~~~--~ 256 (366)
..+. + +..+.++++ ++|+++++.|+.. +|+.+++. +++. .+..+ +.+..++ .
T Consensus 149 ~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~---p~~~~vlviP~~~-~t~~are~~~lp~~~~i~~~d-v~~~~~~~l~ 223 (324)
T TIGR00144 149 DGGHSSKEKSDFLPSSASSAKPAPVIARYDF---PDWNIILAIPEID-SVSGRREVNIFQKYCPVPLRD-VERICHLILM 223 (324)
T ss_pred ECCcccccccccCcccccCCCCCCeEEecCC---CCcEEEEEecCCC-CCCcHHHHHHHHhcCCCCHHH-HHHHHHHHHH
Confidence 8532 0 112444543 4899999999988 77776664 6654 45555 5555554 4
Q ss_pred HHHHHHHcCCHHHHHHHHhc------CcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHH
Q 017756 257 ALVAAVLNGDPVGLGKALSS------DKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGE 330 (366)
Q Consensus 257 ~~~~al~~~d~~~lg~~l~~------~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~ 330 (366)
+++.++.++|++.|++.|+. ++.+++++ .|.+.++++.+++ ++|+.|||||||+|+|+++ +++++.+
T Consensus 224 ~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r---~~li~~~~~~l~~--a~g~~iSGsGPTv~al~~~--~~~~~~~ 296 (324)
T TIGR00144 224 KMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQ---DPLIKRIIDSMIS--APGAGMSSFGPTVYAVTDE--KPGNIAG 296 (324)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcchhhhcccc---CHHHHHHHHHHHh--ccCceecCCCCeEEEEecC--chHHHHH
Confidence 46999999999999999953 13455555 3556666666654 4789999999999999974 3677888
Q ss_pred HHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 331 KMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 331 ~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
.+.+.+.+.+ ..++++++++++.|++|.
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 297 AVADIFGPYG-VYGRIIVTKARNRGAFII 324 (324)
T ss_pred HHHHHhhhCC-CceEEEEEccCCCCCEeC
Confidence 8888877655 478999999999999873
No 27
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=3.5e-35 Score=273.26 Aligned_cols=242 Identities=24% Similarity=0.324 Sum_probs=192.3
Q ss_pred EEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~ 117 (366)
+++||||| ||+ +++.|++.| +++|+++++.. +.+++.. ++. .++. +.|+++++++.
T Consensus 3 ~~~a~aKi-NL~--L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~-----~~~~i~~-~~~-~~~~--~~n~v~~a~~~ 70 (275)
T PRK14611 3 VLLSPAKV-NLG--LWILGKRPDGYHEIFTIYHTIDLYDRIYIKEH-----HTLEVKT-SSP-QIKE--EENIVYKALRL 70 (275)
T ss_pred eeeecceE-Eee--eccCcCCCCCcchhhheeEeccCCcEEEEEEC-----CcEEEEe-CCC-CCCC--cccHHHHHHHH
Confidence 67899999 997 999999988 46677777542 2344432 121 2443 58999999999
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCe
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGF 197 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~ 197 (366)
+.+.+|.. .+++|+++|+||+++|||||||++||++.+++++++.+++.++|.++|..+|.|++ ++++||+
T Consensus 71 ~~~~~g~~-~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~--------~~~~Gg~ 141 (275)
T PRK14611 71 FERYTGID-INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAP--------FFLKGGF 141 (275)
T ss_pred HHHHhCCC-CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC--------eeecCCe
Confidence 98888875 68999999999999999999999999999999999999999999999999997643 3679999
Q ss_pred EEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 017756 198 VLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSD 277 (366)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~ 277 (366)
++..+. ++.+++++.+ .++.+++++|+++++|+++|+.++... ..+.+....++.++.++|++.+...+.|+
T Consensus 142 ~~~~~~-g~~~~~~~~~--~~~~~vv~~p~~~~sT~~~~~~l~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~n~ 213 (275)
T PRK14611 142 ALGRGI-GDKLEFLEKP--ISREITLVYPNIKSSTGRVYSKVTKQI-----LTNKEDLNIIISLLREGEEKKIEEVIENT 213 (275)
T ss_pred EEEecc-CceeEECCcC--CCcEEEEEeCCCCCChHHHHHhcchhh-----ccCcchHHHHHHHHHcCCHHHHHHhcCCc
Confidence 998775 5567776544 456789999999999999999876532 11122345678889999999888777665
Q ss_pred cccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcc
Q 017756 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEE 323 (366)
Q Consensus 278 ~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~ 323 (366)
+++++ ...+|++.++++.+++.|+ ++.||||||++|+++++.+
T Consensus 214 -l~~~~-~~~~P~l~~~~~~l~~~~~-~~~~SGSG~tvf~l~~~~~ 256 (275)
T PRK14611 214 -LGEIA-LELYPEIKEVYRFLEYLGY-KPFVSGSGSSVYVFGKPSE 256 (275)
T ss_pred -ccHHH-HHHCHHHHHHHHHHHhCCC-CEEEeCccccceeEeCCHH
Confidence 44444 6789999999998877674 8899999999999997543
No 28
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=2e-34 Score=279.83 Aligned_cols=302 Identities=19% Similarity=0.239 Sum_probs=220.3
Q ss_pred eEEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC---------CC---CCCCCccHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS---------KL---SKNPLWNCAGIA 114 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~---------~~---~~~~~~n~i~~a 114 (366)
..++|||||+++|||.|+.|..+. ++..++++.+.++ +++.+++.+...+. ++ ....|.+++. +
T Consensus 20 ~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~-~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~w~~y~~-g 97 (387)
T PRK05322 20 DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKR-DDKKVRLYSANFEDLGIIEFDLDDLSFDKEDDWANYPK-G 97 (387)
T ss_pred eEEEcCceeEecccceeecCceeeeeeccceEEEEEEEC-CCCEEEEEECCCCCCceEEEeccccCCCCccchHHHHH-H
Confidence 567899999999999999887554 3444444444333 22566665432210 01 1124788874 4
Q ss_pred HHHHHHHhCCC-CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---Ccchhh
Q 017756 115 AISAMKMLGVR-SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HADNIA 190 (366)
Q Consensus 115 ~~~~~~~~g~~-~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D~~a 190 (366)
+...++..+.. ..|+++.|.++||.|+|||||||+.+|++.|+++++++++++++|+++|+.+|..++|. .+||++
T Consensus 98 vi~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~a 177 (387)
T PRK05322 98 VLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFA 177 (387)
T ss_pred HHHHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHH
Confidence 44455555643 26999999999999999999999999999999999999999999999999999998873 499997
Q ss_pred HhhhcC---eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH------------HHHHhCCcC---------C---
Q 017756 191 PAIMGG---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK------------KMRAALPAE---------V--- 243 (366)
Q Consensus 191 ~~~~GG---~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~------------~~~~~l~~~---------~--- 243 (366)
+.+|| ..+++. ++...+.++++. .++.++|++++.+.+|. ++.+.+... .
T Consensus 178 -s~~G~~~~~~~~d~-~~~~~~~~~~~~-~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~ 254 (387)
T PRK05322 178 -IGMGKKDHAILLDC-NTLEYEYVPLDL-GDYVIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEE 254 (387)
T ss_pred -HHhccCCeEEEEec-CCCceEEeccCC-CCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHH
Confidence 78886 344443 344566666642 35779999999876543 333322100 0
Q ss_pred --------------Chh-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCchHHHHHHHHH-HcCCeE
Q 017756 244 --------------GMP-HHIWNCSQAGALVAAVLNGDPVGLGKALSSDKI--VEPKRAPLIPGMEAVKKVAV-EAGAYG 305 (366)
Q Consensus 244 --------------~~~-~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~--~~~~~~~~~p~l~~l~~~~~-~~Ga~g 305 (366)
.+. +.+.+.+++..++.+|.++|++.|+++|+.++. ++.++ .++|+++.+++.++ +.|++|
T Consensus 255 ~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~-~s~~eld~lv~~a~~~~Ga~g 333 (387)
T PRK05322 255 FDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYE-VTGLELDTLVEAAWKQEGVLG 333 (387)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhc-CCCHhHHHHHHHHHhcCCccE
Confidence 011 112345678888999999999999999987632 23343 45699999999996 579999
Q ss_pred EEeccccCce--EEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEE
Q 017756 306 CTISGAGPTA--VAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 306 a~mSGsG~~~--~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i 358 (366)
++|||+|+|+ ++|++ .+..+++.+.+.+.|.++.+.+..++++++ .+|+++
T Consensus 334 arlsGaG~GG~vial~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~-~~Ga~~ 386 (387)
T PRK05322 334 ARMTGAGFGGCAIAIVK-KDKVEAFKENVGKAYEEKIGYAASFYVAEI-GDGARE 386 (387)
T ss_pred EEEecCCCceEEEEEEc-HHHHHHHHHHHHHHHHHhcCCCCcEEEEec-CCCccc
Confidence 9999999965 56665 556889999999999988777888999998 689875
No 29
>PRK05905 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=269.81 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=179.3
Q ss_pred EEEeeeeecccccChhccccccc-c-------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHH-HH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD-G-------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAG-IA 114 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~-~-------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~-~a 114 (366)
+++||||| ||+ ++|+|+|.| + ++|+++++.... ....+++.+ .....+. .+|+++ ||
T Consensus 2 ~~~apAKI-NL~--L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~~~-~~~~i~~~~--~~~~~~~--~~nli~~ka 73 (258)
T PRK05905 2 KYKSYAKI-NLG--LSIYKKCKKVTKHKLESIFILVENVYDDIEIEKIEK-NIDDIHYFD--ETNEILV--YSRLILVKT 73 (258)
T ss_pred cccccceE-Eee--eeecccCCCCCCcceeEEEEEccccccEEEEEECCC-CCceEEEeC--CCcCCCC--CcchHHHHH
Confidence 57899999 997 999999994 4 456666554321 001244321 1111222 278888 99
Q ss_pred HHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhh
Q 017756 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIM 194 (366)
Q Consensus 115 ~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~ 194 (366)
++.++++++.. .+++|+++|+||.++|||||||+|||++.++|++|+ ++.++|.+++.++++|||+ |++
T Consensus 74 ~~~l~~~~~~~-~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGADVPF--------fl~ 142 (258)
T PRK05905 74 LEWLRDKYNIK-NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGSDIPF--------FLS 142 (258)
T ss_pred HHHHHHHhCCC-CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCcce--------EEe
Confidence 99999999975 589999999999999999999999999999999998 6899999999999999874 788
Q ss_pred c-CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 017756 195 G-GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKA 273 (366)
Q Consensus 195 G-G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~ 273 (366)
| |.++.+|. |+.+++++.+ +..+++++.|++++||+++|+.++......+.. ....+..+.++ ....
T Consensus 143 g~~~a~~~G~-GE~l~pl~~~--~~~~~vlv~P~~~vST~~vY~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~ 210 (258)
T PRK05905 143 GYKTAYISDY-GSQVEDLIGQ--FKLTYKVIFMNVNVSTKKVFEKFDDNQHVIKNN-----FKTIIKNLKEN----IVVN 210 (258)
T ss_pred CCccEEEEee-CceeEECCCC--CCceEEEECCCCCCCHHHHHHhhccccCCcccc-----hHHHHHHHHHh----hhcc
Confidence 9 89999998 8899998643 346799999999999999999875321100000 00111122211 1223
Q ss_pred HhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEec
Q 017756 274 LSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVD 320 (366)
Q Consensus 274 l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~ 320 (366)
+.|| +|+.....+|++.++++.+++.|+ .+.|||||+|+|++-.
T Consensus 211 ~~Nd--Le~~a~~~~P~i~~~~~~l~~~g~-~a~MSGSGstvF~l~~ 254 (258)
T PRK05905 211 IHND--LQEPCFELYPNLLYKYNELLNDGF-YTILSGAGSSFIVIKK 254 (258)
T ss_pred cccc--cHHHHHHhChHHHHHHHHHHhCCC-CEEEeCcchhheEEee
Confidence 5688 999888899999999999999886 8999999999999754
No 30
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=6e-34 Score=274.19 Aligned_cols=299 Identities=23% Similarity=0.297 Sum_probs=214.9
Q ss_pred EEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC-------CC-CCCCCccHHHHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS-------KL-SKNPLWNCAGIAAISAM 119 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~-------~~-~~~~~~n~i~~a~~~~~ 119 (366)
+++|||||+++|||.|+.|.... ++..++++.+.+. +.+++.+...+. .+ ....|.|++..++ ..+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS---EKFIFYSENFNEEKTFELDKLEKLNSWADYIKGVI-WVL 77 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC---CeEEEEECCCCCcEEEeCCccCCCCchHHHHHHHH-HHH
Confidence 68899999999999997765432 2333344444443 344443221110 11 1234778886555 445
Q ss_pred HHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---CcchhhHhhhcC
Q 017756 120 KMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HADNIAPAIMGG 196 (366)
Q Consensus 120 ~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D~~a~~~~GG 196 (366)
+..+....|++|+++++||.++|||||||+++|++.++++++++++++++++++|..+|....|. .+|+++ +.+|+
T Consensus 78 ~~~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~-~~~g~ 156 (351)
T PRK03817 78 EKRGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFA-VAFGK 156 (351)
T ss_pred HHcCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhh-eeecc
Confidence 55555446899999999999999999999999999999999999999999999999999987763 489987 56663
Q ss_pred ---eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcc--hH----------HHHHhCCc----CCC-------------
Q 017756 197 ---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAP--TK----------KMRAALPA----EVG------------- 244 (366)
Q Consensus 197 ---~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~s--T~----------~~~~~l~~----~~~------------- 244 (366)
..+++. .+..+.+++++ +++.+++++|+.... |. ++++.++. ...
T Consensus 157 ~~~~~~~~~-~~~~~~~~~~~--~~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 233 (351)
T PRK03817 157 KDHAIFLDT-MTLEYEYVPFP--EDYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPLLRK 233 (351)
T ss_pred CCEEEEEec-CCCceEEEecC--CCcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHHHHH
Confidence 333333 23456677776 688999999986433 21 22322221 000
Q ss_pred h-hHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCchHHHHHHHHHHcCCeEEEecccc--CceEEEe
Q 017756 245 M-PHHIWNCSQAGALVAAVLNGDPVGLGKALSSDK--IVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAG--PTAVAVV 319 (366)
Q Consensus 245 ~-~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~--~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG--~~~~~l~ 319 (366)
+ .+.+.+.+++..++.+|.++|++.||++|++++ ++++++ .++|+++++++.+++.|++|++|||+| +++++|+
T Consensus 234 ~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~-~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~ 312 (351)
T PRK03817 234 RAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYE-VSCEELDFFVEFALELGAYGARLTGAGFGGSAIALV 312 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEE
Confidence 1 122445567888999999999999999998753 444444 368999999999999999999999999 5567887
Q ss_pred cCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 320 DNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 320 ~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
+ ++.++++.+.+++.|.+......++++++++ +|+++.
T Consensus 313 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~G~~~~ 350 (351)
T PRK03817 313 D-KGKFESIGEELLEEYKKRFGIDPKYFVVESS-DGVRKI 350 (351)
T ss_pred c-hHHHHHHHHHHHHHHHHhcCCCCcEEEEecC-CCceeC
Confidence 6 4678889999999886655556788888875 799875
No 31
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=9.2e-35 Score=269.12 Aligned_cols=245 Identities=24% Similarity=0.323 Sum_probs=187.8
Q ss_pred eEEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
++++||||| ||+ ++++|++.| +++|+++++..+. +.+++.+. ...++ .+.|++.++++
T Consensus 7 ~~~~apaKi-NL~--L~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~---~~~~i~~~--~~~~~--~~~N~v~~a~~ 76 (271)
T PRK00343 7 LDWPAPAKL-NLF--LHITGRRADGYHELQTLFQFLDWGDTLHFEVRDD---GEIRLLTP--IPGVP--EEDNLIVRAAR 76 (271)
T ss_pred EEEeeeeeE-EEE--eecCCcCCCCCCeeeEEEEEcccceEEEEEECCC---CcEEEeCC--CCCCC--CcccHHHHHHH
Confidence 567899999 887 789999987 4677777765442 34555421 11122 35899999999
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcC
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGG 196 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG 196 (366)
.++++++.. .+++|+|+|+||.++|||||||+++|++.+++++++++++.++|.++|.++|.|++ +++.|+
T Consensus 77 ~l~~~~~~~-~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp--------~~l~g~ 147 (271)
T PRK00343 77 LLQKATGTP-LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADVP--------VFVRGH 147 (271)
T ss_pred HHHHHhCCC-CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCce--------EEecCC
Confidence 999998875 59999999999999999999999999999999999999999999999999998764 256666
Q ss_pred eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Q 017756 197 FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSS 276 (366)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~ 276 (366)
.++..+. ++.+++++. +..++++++|+.+++|+++|+.++...... .. ... .+..+ .+.|
T Consensus 148 ~~~~~g~-g~~~~~l~~---~~~~~vl~~p~~~~sT~~~~~~~~~~~~~~-~~----~~~----~~~~~-------~~~N 207 (271)
T PRK00343 148 AAFAEGI-GEILTPVDL---PEKWYLVVKPGVHISTAEIFSDPDLTRDTP-KI----SIA----DFLAG-------PFRN 207 (271)
T ss_pred cEEEEec-CCEEEECCC---CCcEEEEEeCCCCcChHHHHhhhhhccCCC-hh----hHH----HHHhc-------cccC
Confidence 7666665 667888764 355678999999999999997643211100 00 011 11111 1356
Q ss_pred CcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHH
Q 017756 277 DKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF 336 (366)
Q Consensus 277 ~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~ 336 (366)
| ++......+|++.++++.+.+.|+ +.|||||||+|+|+++++.++++.+.+++.|
T Consensus 208 d--le~~~~~~~P~~~~~~~~l~~~ga--~~mSGSG~tvF~l~~~~~~a~~~~~~l~~~~ 263 (271)
T PRK00343 208 D--CEPVVRKRYPEVAQALSWLLEYAP--SRMTGTGACVFAEFDTEAEAEQVLAQLPEWL 263 (271)
T ss_pred C--HHHHHHHhChHHHHHHHHHHhCCC--eEEeccccceEEEcCCHHHHHHHHHHhhhhc
Confidence 6 777777789999999999999998 8899999999999998888888888887654
No 32
>PLN02521 galactokinase
Probab=100.00 E-value=1.6e-32 Score=271.98 Aligned_cols=308 Identities=21% Similarity=0.272 Sum_probs=218.3
Q ss_pred eeEEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC-----C--------CCCCCCccHHH
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS-----K--------LSKNPLWNCAG 112 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~-----~--------~~~~~~~n~i~ 112 (366)
...++|||||+++|||.||.|..+. ++..++++.+.++.+++.+++.+.+... . .....|.||+.
T Consensus 48 ~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~W~nYv~ 127 (497)
T PLN02521 48 DLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVNDKYTTCTFPADPDQEVDLANHKWGNYFI 127 (497)
T ss_pred CEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCCCCCceeeecCcccccccccccHHHHHH
Confidence 3678999999999999999988654 3444444544443111456664322210 0 01124889985
Q ss_pred HHHHHHHHHh---CCC---CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--C
Q 017756 113 IAAISAMKML---GVR---SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG--Y 184 (366)
Q Consensus 113 ~a~~~~~~~~---g~~---~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g--~ 184 (366)
.++..+.+.+ +.. ..|+++.|+++||.|+|||||||.++|++.+++++++.++++++|+++|+++|..+.+ +
T Consensus 128 ~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g 207 (497)
T PLN02521 128 CGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSG 207 (497)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCC
Confidence 4443333332 321 2499999999999999999999999999999999999999999999999999996544 4
Q ss_pred CcchhhHhhhc--CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcc---hH------------HHHHhCCc------
Q 017756 185 HADNIAPAIMG--GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAP---TK------------KMRAALPA------ 241 (366)
Q Consensus 185 ~~D~~a~~~~G--G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~s---T~------------~~~~~l~~------ 241 (366)
++||++ +++| |.+++...++..++++++| .++.++|++|.++.. |. .+.+.+..
T Consensus 208 ~mDq~a-s~~g~~g~al~~d~~~l~~~~v~~p--~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~ 284 (497)
T PLN02521 208 GMDQAI-SIMAQQGVAKLIDFNPVRATDVQLP--AGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSA 284 (497)
T ss_pred hHHHHH-HHhcCCCcEEEEecCCCceEEeecC--CCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcc
Confidence 799987 7888 7776555545678888877 678899999884322 21 01111100
Q ss_pred -----------------------------------------------------C-----------------------CCh
Q 017756 242 -----------------------------------------------------E-----------------------VGM 245 (366)
Q Consensus 242 -----------------------------------------------------~-----------------------~~~ 245 (366)
. +.+
T Consensus 285 ~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R 364 (497)
T PLN02521 285 EEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQR 364 (497)
T ss_pred hhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhh
Confidence 0 001
Q ss_pred hHH-HHHHHHHHHHHHHHHcC-----CHHHHHHHHhcCccccc-ccCCCCchHHHHHHHHHHcCCeEEEeccccCceEE-
Q 017756 246 PHH-IWNCSQAGALVAAVLNG-----DPVGLGKALSSDKIVEP-KRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVA- 317 (366)
Q Consensus 246 ~~~-i~~~~~~~~~~~al~~~-----d~~~lg~~l~~~~~~~~-~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~- 317 (366)
..| +.+..++.++..+|+++ ++..||++|+++|...+ ....++|++|.+++.+++.|++|+||+|+|+|+++
T Consensus 365 a~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i 444 (497)
T PLN02521 365 AVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAV 444 (497)
T ss_pred hhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEE
Confidence 122 23556788888998876 38899999998843222 22467899999999999999999999999999764
Q ss_pred -EecCcchHHHHHHHHHHHHHHcC---------CCceEEEEeeeCCCceEEEc
Q 017756 318 -VVDNEEKGKVIGEKMVEAFWKEG---------NLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 318 -l~~~~~~a~~v~~~l~~~~~~~g---------~~~~~~~~~~~~~~Ga~i~~ 360 (366)
|++ ++.++++.+.+.+.|.+.. +.+..++++++ ..|++++.
T Consensus 445 ~lv~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p-~~Ga~~~~ 495 (497)
T PLN02521 445 ALVK-EAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKP-SSGAAILK 495 (497)
T ss_pred EEEC-HHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEec-CCCceEee
Confidence 444 5667889999988887651 34567888888 69998763
No 33
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=258.48 Aligned_cols=233 Identities=19% Similarity=0.134 Sum_probs=169.3
Q ss_pred EEEeeeeecccccChhcccccccc-------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 50 KTFAPATVANLGPCFDFLGCAVDG-------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~~-------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
+++||||| ||+ ++++|++ |+ +||+++++.... +.+++. +...+| + ++|+++||++
T Consensus 2 ~~~apaKI-NL~--L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~---~~~~i~---~~~~~p-~-~~NLv~kA~~ 69 (257)
T PRK04181 2 VMKAYAKV-NIF--LKILGKR-GNYHELISRFVLVKDLFDEIEFVPKSA---ESFELI---GNFDCP-L-EENIIYKAYQ 69 (257)
T ss_pred CccccceE-EEE--EeeCcCC-CCCceeheeeeEccCcCcEEEEEECCC---CCEEEE---cCCCCC-C-CCcHHHHHHH
Confidence 56899999 997 9999999 84 556666654221 235543 221233 2 4899999998
Q ss_pred HHHHH-hCCC----CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhH
Q 017756 117 SAMKM-LGVR----SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAP 191 (366)
Q Consensus 117 ~~~~~-~g~~----~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~ 191 (366)
.++++ ++.. ..+++|+++|+||.++|||||||++||++.++|++|+++++.++|.++|.++++|||+
T Consensus 70 ~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPf-------- 141 (257)
T PRK04181 70 ELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAF-------- 141 (257)
T ss_pred HHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccE--------
Confidence 88874 4421 1489999999999999999999999999999999999999999999999999999874
Q ss_pred hhhc-CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCC-hhHHHHHHHHHHHHHHHHHcCCH-H
Q 017756 192 AIMG-GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVG-MPHHIWNCSQAGALVAAVLNGDP-V 268 (366)
Q Consensus 192 ~~~G-G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~-~~~~i~~~~~~~~~~~al~~~d~-~ 268 (366)
|++| |.++.+|+ |+.+++++.. +. .++++.|++++||+++|+.++.... ..+.. . . .....+..+++ .
T Consensus 142 fl~~~~~a~~~G~-Ge~l~~l~~~--~~-~~~lv~P~~~vsT~~vy~~~~~~~~~~~~~~-~---~-~~~~~~~~~~~~~ 212 (257)
T PRK04181 142 FISGYKSANVSGI-GEIVEEFEEE--IL-NLEIFTPNIFCSTKAVYKAYREEFYDFISFN-Q---A-KELLKLSSLELLK 212 (257)
T ss_pred EecCCceEEEEee-CCeeEECCCC--CC-eEEEECCCCCcCHHHHHHHHhhcccccCCcc-c---c-chhhhcchHHHHH
Confidence 7888 89999998 7899998532 23 4889999999999999987743210 00000 0 0 00011111111 1
Q ss_pred HHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEec
Q 017756 269 GLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVD 320 (366)
Q Consensus 269 ~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~ 320 (366)
.+...+.|| +|+.....+|++.++++ ..+.|||||+++|++-.
T Consensus 213 ~~~~~~~Nd--le~~a~~~~P~i~~~~~-------~~~~mSGSGstvF~l~~ 255 (257)
T PRK04181 213 NFKNTELND--LLAPALKLYPALKDYLG-------EDWFFSGSGSSFFRVKR 255 (257)
T ss_pred hhcccCCCC--cHHHHHHhCHHHHHHhc-------CCcEEeCcCcceEEEee
Confidence 122234678 89888888999998854 34679999999999753
No 34
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=2.3e-32 Score=253.62 Aligned_cols=281 Identities=23% Similarity=0.273 Sum_probs=208.0
Q ss_pred EEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCCC-CCCCCCccHHHHHHHHHHHHhCC-C
Q 017756 50 KTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPSK-LSKNPLWNCAGIAAISAMKMLGV-R 125 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~~-~~~~~~~n~i~~a~~~~~~~~g~-~ 125 (366)
.+++|||++++|||..++|.... ++..+++++..+. ++..+.+.+...... +..++...++..++..+.+..+. +
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~ 80 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISES-DSNKIVIESSDLKSSTLERDEDEGYIQAAVRLASELLNQSS 80 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEec-CCCcEEEeccCCCCccccccccchHHHHHHHHHHHHhcccC
Confidence 57899999999999998877443 3334444444443 224566654322212 22333346766666666666662 2
Q ss_pred CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEeec
Q 017756 126 SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIRSY 203 (366)
Q Consensus 126 ~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~~~ 203 (366)
..|++++|.++||+++|||||+|.++|++.|+++++|.+++++++++++...|..++|. ++|... +++||++.+...
T Consensus 81 ~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~-~~~gg~v~~~~~ 159 (307)
T COG1577 81 LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIAT-ITYGGLVAFKKG 159 (307)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCcccceE-EEeCCEEEEecC
Confidence 36999999999999999999999999999999999999999999999999999999985 789665 899999998753
Q ss_pred CCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcC----CChh-HHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcC
Q 017756 204 EPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAE----VGMP-HHIWN-CSQAGALVAAVLNGDPVGLGKALSSD 277 (366)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~----~~~~-~~i~~-~~~~~~~~~al~~~d~~~lg~~l~~~ 277 (366)
..++++.++.. . .++|.+.+++.+|+++.+.+... .... ..+.. ...+.++..++.++|.+.|+++|+.+
T Consensus 160 --~~~~~l~~~~~-~-~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~n 235 (307)
T COG1577 160 --FDFEKLEIELL-G-TLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNIN 235 (307)
T ss_pred --CCccccccccC-C-eEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34566665521 2 68999999999999776544322 1111 22222 23567778999999999999999987
Q ss_pred cccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceE--EEecCcchHHHHHHHHHHHHHHcC
Q 017756 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAV--AVVDNEEKGKVIGEKMVEAFWKEG 340 (366)
Q Consensus 278 ~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~--~l~~~~~~a~~v~~~l~~~~~~~g 340 (366)
|.+......++|+++++++.+++.|+.|+|+||+|.|++ +|+++++. .+.+.+.|.+.+
T Consensus 236 q~LL~~LgVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~----~~~l~~~~~~~~ 296 (307)
T COG1577 236 QGLLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEI----AETLSNRLEKAG 296 (307)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchH----HHHHHHHHHhcC
Confidence 767777778999999999999999999999999999864 55554222 455666666655
No 35
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=7.7e-33 Score=257.82 Aligned_cols=257 Identities=22% Similarity=0.237 Sum_probs=185.2
Q ss_pred eeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCCC---C--CCCCCccHHHHHHHHHHHHhCCC
Q 017756 53 APATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPSK---L--SKNPLWNCAGIAAISAMKMLGVR 125 (366)
Q Consensus 53 aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~~---~--~~~~~~n~i~~a~~~~~~~~g~~ 125 (366)
||||++++|||.|+.|..+. ++..++++...++ . +.+++........ . ..+.|.+++..++..+.+ .+
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~-- 75 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIES-S-DGSFIESDLGRGSLDDAPQELDGLVSYIAEALSYFSE-LN-- 75 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEc-C-CCceEeccccCCcHhHhhHHHHHHHHHHHHHHHHhhc-cC--
Confidence 69999999999999988554 3445555544443 1 2244432111100 0 113356676544443322 12
Q ss_pred CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEeec
Q 017756 126 SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIRSY 203 (366)
Q Consensus 126 ~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~~~ 203 (366)
..+++|+++++||.++|||||||+++|++.|++++++.++++++|+++|..+|..++|. ++|+.+ +++||+++++..
T Consensus 76 ~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~-~~~Gg~~~~~~~ 154 (273)
T TIGR00549 76 PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTAT-STYGGPVYFEKG 154 (273)
T ss_pred CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHH-HhcCCeEEEEcC
Confidence 13599999999999999999999999999999999999999999999999999988874 679865 899999987643
Q ss_pred CCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCC----ChhHH-HHH-HHHHHHHHHHHHcCCHHHHHHHHhcC
Q 017756 204 EPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEV----GMPHH-IWN-CSQAGALVAAVLNGDPVGLGKALSSD 277 (366)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~----~~~~~-i~~-~~~~~~~~~al~~~d~~~lg~~l~~~ 277 (366)
.+ ..++..+ +++++++++|+.+++|+++++.+.... ...+. +.. ...+.+++.+|.++|++.|+++|+++
T Consensus 155 ~~--~~~~~~~--~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~l~~~~ 230 (273)
T TIGR00549 155 EG--EFTKLIS--LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIGELTLEAKAALQDGDVESLGELMNIN 230 (273)
T ss_pred CC--ceeeccC--CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22 2333333 468899999999999998876542211 11111 111 23567778999999999999999876
Q ss_pred cccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEe
Q 017756 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVV 319 (366)
Q Consensus 278 ~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~ 319 (366)
|........++|+++++++.+++.|++|++|||||+|++++.
T Consensus 231 ~~~l~~~~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~ 272 (273)
T TIGR00549 231 QGLLKALGVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIA 272 (273)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEe
Confidence 433333355789999999999999999999999999998764
No 36
>PLN02865 galactokinase
Probab=100.00 E-value=6.6e-32 Score=262.05 Aligned_cols=302 Identities=20% Similarity=0.177 Sum_probs=217.3
Q ss_pred eEEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC----CC---------------CCCCC
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS----KL---------------SKNPL 107 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~----~~---------------~~~~~ 107 (366)
..++|||||+++|||+|+.|..+. ++...+++...++ +++.+++.+...+. .+ ....|
T Consensus 31 ~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~-~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 109 (423)
T PLN02865 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS-GDPEVLLRSAQFEGEVRFRVDEIQHPIANVSSDSKEESNW 109 (423)
T ss_pred eEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEEC-CCCEEEEEECCCCCceEEeccccccccccccccCCCCCCH
Confidence 468899999999999999888664 3444444444443 22456654322110 00 11358
Q ss_pred ccHHHHHHHHHHHHhCCCC-cceEEEEeeCC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--
Q 017756 108 WNCAGIAAISAMKMLGVRS-VGLSLSLEKGL-PLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG-- 183 (366)
Q Consensus 108 ~n~i~~a~~~~~~~~g~~~-~g~~I~i~~~I-P~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g-- 183 (366)
.||+ +++...+.+.|... .|+++.|.+++ |.++|||||||+.+|++.+++.++++++++++++++++.+|..+.|
T Consensus 110 ~~Yv-~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~ 188 (423)
T PLN02865 110 GDYA-RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLR 188 (423)
T ss_pred HHHH-HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9998 55555555667643 69999999999 5899999999999999999999999999999999999999988776
Q ss_pred -CCcchhhHhhhc---CeEEEeecCCCceEEeeCCC-----cCceEEEEEcCCCCcc-h-H-----------HHHHhC--
Q 017756 184 -YHADNIAPAIMG---GFVLIRSYEPLDLMRLNFPE-----KKQLLFVLVTPEFEAP-T-K-----------KMRAAL-- 239 (366)
Q Consensus 184 -~~~D~~a~~~~G---G~~~~~~~~~~~~~~l~~~~-----~~~~~~vl~~p~~~~s-T-~-----------~~~~~l-- 239 (366)
+.|||++ +++| +..+++.. +...++++++. ..++.+++++++.... | . .+.+.+
T Consensus 189 ~G~mDQ~a-s~~~~~g~~~~iDf~-~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~ 266 (423)
T PLN02865 189 NGILDQSA-ILLSRYGCLTFMDCK-TLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLE 266 (423)
T ss_pred CccccHHH-HHhcccCceEEEEcc-CCCcceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHH
Confidence 3699997 4554 66666665 34555555431 1257788888876543 2 1 111111
Q ss_pred -----------Cc---C-------------CChhHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc---CCCC
Q 017756 240 -----------PA---E-------------VGMPHH-IWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKR---APLI 288 (366)
Q Consensus 240 -----------~~---~-------------~~~~~~-i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~---~~~~ 288 (366)
.. . ..|..| +.+..++.+.+.+|+++|++.||++|+.+ |...+ ..++
T Consensus 267 ~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~s--h~Slrd~yevS~ 344 (423)
T PLN02865 267 ASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISAS--GLSSIENYECGC 344 (423)
T ss_pred hcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh--hhhHHhhccCCc
Confidence 00 0 012223 34667889999999999999999999987 55444 3568
Q ss_pred chHHHHHHHHHH-cCCeEEEeccccCce--EEEecCcchHHHHHHHHHHHHHHc-------CCCceEEEEeeeCCCceEE
Q 017756 289 PGMEAVKKVAVE-AGAYGCTISGAGPTA--VAVVDNEEKGKVIGEKMVEAFWKE-------GNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 289 p~l~~l~~~~~~-~Ga~ga~mSGsG~~~--~~l~~~~~~a~~v~~~l~~~~~~~-------g~~~~~~~~~~~~~~Ga~i 358 (366)
|+++.+++.+++ .|++|+||+|+|+|+ ++|++ ++..+++.+.+.+.|.+. .+.+..++++++ .+|+++
T Consensus 345 ~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~-~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p-~~Ga~~ 422 (423)
T PLN02865 345 EPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD-AEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEA-GDCARV 422 (423)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEc-hhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEec-CCCccc
Confidence 999999999998 499999999999986 56666 578899999999988764 234567888888 688875
No 37
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=2.4e-31 Score=255.94 Aligned_cols=290 Identities=18% Similarity=0.196 Sum_probs=204.6
Q ss_pred EEEeeeeecccccChhcc-cc-ccc-ccCCEEEEEEcCCCCCCcEEEEeecCCC----------CC----C-CCCCccHH
Q 017756 50 KTFAPATVANLGPCFDFL-GC-AVD-GLGDYVSLKVDPSVHPGEVSISEVIGPS----------KL----S-KNPLWNCA 111 (366)
Q Consensus 50 ~~~aPaki~nlGe~~dv~-g~-~~~-~l~~~v~v~~~~~~~~~~i~i~~~~g~~----------~~----~-~~~~~n~i 111 (366)
+++||||++++|||.++. |. ++- ++..++++++.++ +++.+++.+..... .+ + .+.|.+++
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~-~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDA-DGAADVIISSDLGPQPVGWRRHDGRLVVRDPDARSALAYV 80 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeC-CCCceEEEecCCCCCceEEEecCCceeecccccccchHHH
Confidence 578999999999999998 76 322 3444555544443 11334443221100 00 0 12466788
Q ss_pred HHHHHHHHHHh---CCCCcceEEEEeeCCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC-
Q 017756 112 GIAAISAMKML---GVRSVGLSLSLEKGLPLG----SGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG- 183 (366)
Q Consensus 112 ~~a~~~~~~~~---g~~~~g~~I~i~~~IP~g----aGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g- 183 (366)
..++..+.+++ +...+|+++++.++||.+ +|||||||.++|++.|++++++.++++++|+++|+.+|..++|
T Consensus 81 ~~~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~ 160 (358)
T TIGR01220 81 VSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPK 160 (358)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCC
Confidence 66665544433 444458999999999984 6999999999999999999999999999999999999988876
Q ss_pred -CCcchhhHhhhcCeEEEeecC----------------------CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCC
Q 017756 184 -YHADNIAPAIMGGFVLIRSYE----------------------PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALP 240 (366)
Q Consensus 184 -~~~D~~a~~~~GG~~~~~~~~----------------------~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~ 240 (366)
.+.|+++ +++||++.+...+ +..+++++.+ ++++++|++++.+.+|+++.+.+.
T Consensus 161 ~sg~D~~a-~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~--~~~~l~v~~tg~~~~T~~~v~~V~ 237 (358)
T TIGR01220 161 GSCGDIAA-STYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP--KGLTLLIGWTGSPASTASLVSDVH 237 (358)
T ss_pred CCcchhhh-hhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC--CCCEEEEEeCCCCcCcHHHHHHHH
Confidence 3568775 8999998775321 1235677665 678999999999999998765442
Q ss_pred cCC----Chh-HHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc------CCCCchHHHHHHHHHHcCCeEEEe
Q 017756 241 AEV----GMP-HHIWN-CSQAGALVAAVLNGDPVGLGKALSSDKIVEPKR------APLIPGMEAVKKVAVEAGAYGCTI 308 (366)
Q Consensus 241 ~~~----~~~-~~i~~-~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~------~~~~p~l~~l~~~~~~~Ga~ga~m 308 (366)
+.. +.. ..+.. ...+.++..+|.++|++.|+++|+++|.+.... ..++|+++++++.+++.|+ ++|+
T Consensus 238 ~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKl 316 (358)
T TIGR01220 238 RRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKP 316 (358)
T ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecC
Confidence 221 111 22222 235677889999999999999998875444332 4568999999999999998 9999
Q ss_pred ccccCceEE--EecCcchHHHHHHHHHHHHHHcCCCceEEEEeee
Q 017756 309 SGAGPTAVA--VVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRL 351 (366)
Q Consensus 309 SGsG~~~~~--l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~ 351 (366)
||+|.|+++ |+.+++.+ +.+.++|.++| .....+++
T Consensus 317 sGAGgGg~~ial~~~~~~~----~~~~~~~~~~G---~~~l~~~~ 354 (358)
T TIGR01220 317 SGAGGGDCGIAILDAEADI----THVRQRWETAG---ILPLPLTP 354 (358)
T ss_pred CCCCCcCEEEEEeCCchhH----HHHHHHHHHCC---CeEeeeec
Confidence 999999754 56554444 45566666677 34455544
No 38
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=5.4e-31 Score=258.07 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=215.0
Q ss_pred eEEEeeeeecccccChhccccccc--ccCCEEEEEEcCC--CCCCcEEEEeecCC----CCC----CCCCCccHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPS--VHPGEVSISEVIGP----SKL----SKNPLWNCAGIAAI 116 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~--~~~~~i~i~~~~g~----~~~----~~~~~~n~i~~a~~ 116 (366)
+.++|||||+++|||+|+.|..+. +|..+++|.+.++ ..++.+++...... ... ....|.||+.-++.
T Consensus 38 ~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W~nYv~gv~~ 117 (468)
T PTZ00290 38 LFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATETDEHFVLDHLGGAKHNKAWTTFVRGAAT 117 (468)
T ss_pred EEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECCCceeecCcccccCCcccHHHHHHHHHH
Confidence 678999999999999998887654 3444444443221 01245666321110 001 11348899855444
Q ss_pred HHHHHhCCC-----CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----C------------C---CHHHHH
Q 017756 117 SAMKMLGVR-----SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGN-----K------------L---LPDELV 171 (366)
Q Consensus 117 ~~~~~~g~~-----~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~-----~------------l---s~~eL~ 171 (366)
.++++.|.+ ..|+++.|.++||.|+||+||||+.+|++.|+++++++ + + +..+|+
T Consensus 118 ~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 197 (468)
T PTZ00290 118 LRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELA 197 (468)
T ss_pred HHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHH
Confidence 556767763 35999999999999999999999999999999998732 1 2 347888
Q ss_pred HHHHHhhhhccC---CCcchhhHhhhc--CeEEEeecCCCceEEeeCCC--cCceEEEEEcCCCCcc----hHH------
Q 017756 172 IAGLESEAKVSG---YHADNIAPAIMG--GFVLIRSYEPLDLMRLNFPE--KKQLLFVLVTPEFEAP----TKK------ 234 (366)
Q Consensus 172 ~la~~~e~~v~g---~~~D~~a~~~~G--G~~~~~~~~~~~~~~l~~~~--~~~~~~vl~~p~~~~s----T~~------ 234 (366)
.+|+++|+++.| +.|||++ +.+| |.+++-+....++++++++. ..++.++|++++++.+ |..
T Consensus 198 ~~aqraEn~~vGv~cGiMDQ~a-sa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr 276 (468)
T PTZ00290 198 KQARRIETEFCGVNVGIMDQFI-SAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVR 276 (468)
T ss_pred HHHHHHHHhhcCCCcchhhHHH-HHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHH
Confidence 889999998765 5899998 6787 44444333356778887642 1368999999987654 111
Q ss_pred -----HHHhCCc---------------------------C-------------CChhHH-HHHHHHHHHHHHHHH-----
Q 017756 235 -----MRAALPA---------------------------E-------------VGMPHH-IWNCSQAGALVAAVL----- 263 (366)
Q Consensus 235 -----~~~~l~~---------------------------~-------------~~~~~~-i~~~~~~~~~~~al~----- 263 (366)
+.+.+.. . ..+..| +.+..++.+++.+|.
T Consensus 277 ~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l 356 (468)
T PTZ00290 277 SDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPL 356 (468)
T ss_pred HHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhc
Confidence 1111100 0 001222 345667888888884
Q ss_pred --cCCHHHHHHHHhcCc-ccccccCCCCchHHHHHHHHH-HcCCeEEEeccccCceE--EEecCcchHHHHHHHHHHHHH
Q 017756 264 --NGDPVGLGKALSSDK-IVEPKRAPLIPGMEAVKKVAV-EAGAYGCTISGAGPTAV--AVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 264 --~~d~~~lg~~l~~~~-~~~~~~~~~~p~l~~l~~~~~-~~Ga~ga~mSGsG~~~~--~l~~~~~~a~~v~~~l~~~~~ 337 (366)
.+|+..||++|+.+| .+......++|++|.+++.+. ..|++|+||||+|+|++ +|++ ++..+++.+++++.|.
T Consensus 357 ~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~-~~~~~~~~~~v~~~y~ 435 (468)
T PTZ00290 357 SREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLK-KNAVDRVVAHVREKFK 435 (468)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEec-hhhHHHHHHHHHHHHH
Confidence 456999999999883 122233478999999999764 56999999999999875 4555 5678999999999998
Q ss_pred HcCCCceEEEEeeeCCCceEEE
Q 017756 338 KEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 338 ~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
+.++.+..++++++ .+|+++.
T Consensus 436 ~~~g~~~~~~~~~~-~~Ga~~~ 456 (468)
T PTZ00290 436 ARFGVENDVYPVVA-GDGAFVV 456 (468)
T ss_pred HhhCCCCcEEEEec-CCCcEEE
Confidence 88666789999998 6999876
No 39
>PLN02677 mevalonate kinase
Probab=99.98 E-value=2.6e-30 Score=248.76 Aligned_cols=302 Identities=18% Similarity=0.191 Sum_probs=209.4
Q ss_pred eeEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCC-CCCcEEEEeecCC-------CCCCC----------C
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSV-HPGEVSISEVIGP-------SKLSK----------N 105 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~-~~~~i~i~~~~g~-------~~~~~----------~ 105 (366)
++.++||||++++|||.++.|.... +++.+++++..+.. ..+.+.+...+.+ ..++. +
T Consensus 2 ~i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~~ 81 (387)
T PLN02677 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCPS 81 (387)
T ss_pred ceEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhccccccccc
Confidence 4688999999999999999877433 36666666542210 1133432210000 00100 0
Q ss_pred CCccHHHHH---HHHHHHHhCCC----------------------CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHH
Q 017756 106 PLWNCAGIA---AISAMKMLGVR----------------------SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEM 160 (366)
Q Consensus 106 ~~~n~i~~a---~~~~~~~~g~~----------------------~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l 160 (366)
....++..+ +..+++..+.+ ..+++++|+++||+|+|||||+|.++|++.|++.+
T Consensus 82 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~ 161 (387)
T PLN02677 82 TPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAA 161 (387)
T ss_pred cccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHH
Confidence 011222223 23333322221 24789999999999999999999999999999999
Q ss_pred hC-CCC-------------CHHHHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEE
Q 017756 161 FG-NKL-------------LPDELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLV 224 (366)
Q Consensus 161 ~~-~~l-------------s~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~ 224 (366)
++ +++ +.+++.++|..+|..++|. +.|+.+ +.+||++.++.. .+++++.+ .+++++|+
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~-s~~Gg~I~f~~~---~~~~l~~~--~~l~llv~ 235 (387)
T PLN02677 162 SDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTV-STYGNMIKFKSG---ELTRLQSN--MPLKMLIT 235 (387)
T ss_pred hCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHH-HhcCCeEEEcCC---CceecCCC--CCceEEEE
Confidence 98 333 2357788999999999984 779886 899999887643 35666654 57899999
Q ss_pred cCCCCcchHHHHHhCCcCC----ChhHH-HHH-HHHHHHHHHHHHc---------CCHHHHHHHHhcCcccccccCCCCc
Q 017756 225 TPEFEAPTKKMRAALPAEV----GMPHH-IWN-CSQAGALVAAVLN---------GDPVGLGKALSSDKIVEPKRAPLIP 289 (366)
Q Consensus 225 ~p~~~~sT~~~~~~l~~~~----~~~~~-i~~-~~~~~~~~~al~~---------~d~~~lg~~l~~~~~~~~~~~~~~p 289 (366)
+++++.+|+++.+.+.+.. ...+. +.. ...+.++..+|.+ +|+..++++|+.++.+......++|
T Consensus 236 dTgv~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~~ 315 (387)
T PLN02677 236 NTRVGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSHS 315 (387)
T ss_pred ECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCcH
Confidence 9999999998876654322 11112 222 2346777888887 5689999999988666667778999
Q ss_pred hHHHHHHHHHHcCCeEEEeccccCceEEE--ecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 290 GMEAVKKVAVEAGAYGCTISGAGPTAVAV--VDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 290 ~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l--~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
.|+.+++.+++.| +++|+||+|.|+++| .++ +..++..+.+.+.|.+.| ++++.+.+..+|+.+..
T Consensus 316 ~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~-~~~~~~~~~l~~~l~~~G---~~~~~~~~g~~Gv~~~~ 383 (387)
T PLN02677 316 SIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPT-LLSGTVVDKVIAELESSG---FQCFTAGIGGNGVQICY 383 (387)
T ss_pred HHHHHHHHHHHcC-CccccccCCCCCEEEEEccc-ccchhHHHHHHHHHHHCC---CeEEEEEeCCCceEEEe
Confidence 9999999999986 799999999987554 442 222333455667777776 78999999999999875
No 40
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=225.96 Aligned_cols=300 Identities=20% Similarity=0.218 Sum_probs=212.2
Q ss_pred eEEEeeeeecccccChhc------cccccc--ccCCEEEEEEcCCCCCCcEEEEeecCC---CCCCCCCCccHHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDF------LGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGP---SKLSKNPLWNCAGIAAIS 117 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv------~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~---~~~~~~~~~n~i~~a~~~ 117 (366)
++.++|-||...|.|+|+ .|.++. .+..++++.+.+.. +++|++....-. ..+..+ ...++..++++
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~-d~~I~~~~~~~~~v~~~~~~~-h~~~~~~~l~r 79 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGF-DDEIRVRYDRTEFVKSYLENE-HKPLVVESLKR 79 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCC-CceEEEecchHHhhhhhHhhc-CchHHHHHHHH
Confidence 345699999888878884 333332 34455555555542 267776421000 011112 12444333333
Q ss_pred -HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc---cCCCcchhhHhh
Q 017756 118 -AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV---SGYHADNIAPAI 193 (366)
Q Consensus 118 -~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v---~g~~~D~~a~~~ 193 (366)
++..-|.+ +++|...+++|+|+|||||||+.+|++.|++.+.|..+++.+|+++|..+|+.. .|+.|||++ +.
T Consensus 80 ~~l~~~g~~--~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYa-aA 156 (333)
T COG2605 80 DFLEFNGGT--PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYA-AA 156 (333)
T ss_pred HHHhhcCCC--ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHH-HH
Confidence 33333432 499999999999999999999999999999999999999999999999999964 457899998 68
Q ss_pred hcCeEEEeec-CC-CceEEeeCCC----cCceEEEEEcCCCCcchHHHHH----hCCcCC-ChhHHH-HHHHHHHHHHHH
Q 017756 194 MGGFVLIRSY-EP-LDLMRLNFPE----KKQLLFVLVTPEFEAPTKKMRA----ALPAEV-GMPHHI-WNCSQAGALVAA 261 (366)
Q Consensus 194 ~GG~~~~~~~-~~-~~~~~l~~~~----~~~~~~vl~~p~~~~sT~~~~~----~l~~~~-~~~~~i-~~~~~~~~~~~a 261 (366)
+||+.++++. ++ ..+.|+.... ..+.++++++++.....+++.. ++.+.. ...+.. .....+.++..+
T Consensus 157 ~GGFnfMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~a 236 (333)
T COG2605 157 FGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDA 236 (333)
T ss_pred hCCceEEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 23 3456776542 1356889999998765544332 222111 111222 234457788899
Q ss_pred HHcCCHHHHHHHHhcCcccccccCC--CCchHHHHHHHHHHcCCeEEEeccccCceEEEec-CcchHHHHHHHHHHHHHH
Q 017756 262 VLNGDPVGLGKALSSDKIVEPKRAP--LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVD-NEEKGKVIGEKMVEAFWK 338 (366)
Q Consensus 262 l~~~d~~~lg~~l~~~~~~~~~~~~--~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~-~~~~a~~v~~~l~~~~~~ 338 (366)
|..+|+..|+++|+..|...+.... +.|.||.+++.+++.||+++|++|+|+++|.|+- ++.+..++++.|.+.
T Consensus 237 l~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~--- 313 (333)
T COG2605 237 LVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEKE--- 313 (333)
T ss_pred HHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHHHHHh---
Confidence 9999999999999998876665543 5699999999999999999999999999987653 577888888777663
Q ss_pred cCCCceEEEEeeeCCCceEEEc
Q 017756 339 EGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 339 ~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
. ..+..+++|.+|.+++.
T Consensus 314 -~---~~~~~~~Fd~~Gsr~i~ 331 (333)
T COG2605 314 -Q---GFVVDTSFDKEGSRIIF 331 (333)
T ss_pred -c---CCeEEEEecCCCeEEEe
Confidence 2 33555889999999885
No 41
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=262.45 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=213.6
Q ss_pred eEEEeeeeecccccChh------ccccccc----ccC----CEEEEEEcCCCCCCcEEEEeecCC--------CCC----
Q 017756 49 VKTFAPATVANLGPCFD------FLGCAVD----GLG----DYVSLKVDPSVHPGEVSISEVIGP--------SKL---- 102 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~d------v~g~~~~----~l~----~~v~v~~~~~~~~~~i~i~~~~g~--------~~~---- 102 (366)
+..++|+||+++|+|+| +.|..+. +++ .+++++..+. ..+++.+.+.. .++
T Consensus 610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d---~~irl~S~d~~~~~~v~~~~~l~~~~ 686 (974)
T PRK13412 610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSE---PHIVLRSIDLGAMEVVRTNEELRDYK 686 (974)
T ss_pred EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCC---CeEEEEECCCCCceEEecchhhcccc
Confidence 45599999999999999 6666443 233 4455554432 56666542211 011
Q ss_pred CCCCCccHHHHH-----------------HHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCC
Q 017756 103 SKNPLWNCAGIA-----------------AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKL 165 (366)
Q Consensus 103 ~~~~~~n~i~~a-----------------~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~l 165 (366)
..+.|.+++.-+ +++.++.+| .|++|++.++||.|+|||||||+++|++.|++++++.++
T Consensus 687 ~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G---~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~l 763 (974)
T PRK13412 687 KVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFG---SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAW 763 (974)
T ss_pred cccchHhhhhhhheecccccccccchhHHHHHHHHhcC---CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 011244444222 222334444 489999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhhccC--CCcchhhHhhhcCeEEEeecCC----CceEEeeCCC----cCceEEEEEcCCCCcchHHH
Q 017756 166 LPDELVIAGLESEAKVSG--YHADNIAPAIMGGFVLIRSYEP----LDLMRLNFPE----KKQLLFVLVTPEFEAPTKKM 235 (366)
Q Consensus 166 s~~eL~~la~~~e~~v~g--~~~D~~a~~~~GG~~~~~~~~~----~~~~~l~~~~----~~~~~~vl~~p~~~~sT~~~ 235 (366)
++++|+++|..+|..++| +++||++ +.+||+.++....+ ..+++++.+. ..+-+++|+++++..+|+++
T Consensus 764 s~~ela~~A~~~E~~lhg~~g~qDq~~-a~~GG~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~i 842 (974)
T PRK13412 764 DKNEICNRTLVLEQLLTTGGGWQDQYG-GVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGI 842 (974)
T ss_pred CHHHHHHHHHHHHHHHCCCCchhhhhh-HhcCCeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHH
Confidence 999999999999988876 4899987 79999998764421 2355565431 12346999999999999886
Q ss_pred HHh----CCcCCCh-hHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc--CCCCchHHHHHHHHHHcCCeEEE
Q 017756 236 RAA----LPAEVGM-PHHIWN-CSQAGALVAAVLNGDPVGLGKALSSDKIVEPKR--APLIPGMEAVKKVAVEAGAYGCT 307 (366)
Q Consensus 236 ~~~----l~~~~~~-~~~i~~-~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~--~~~~p~l~~l~~~~~~~Ga~ga~ 307 (366)
.+. +....+. ...+.. .+.+.++..+|.++|++.||++|+..|.+.... ..+.|+++++++.+++ ||+|+|
T Consensus 843 V~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaK 921 (974)
T PRK13412 843 LAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYK 921 (974)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEE
Confidence 543 2111111 112222 234677889999999999999999876555555 5678999999999965 799999
Q ss_pred eccccCceEE--EecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 308 ISGAGPTAVA--VVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 308 mSGsG~~~~~--l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
+||+|.|+|+ ++++++.++++.+.+++.-.. + ....+.++++.+|++|.+
T Consensus 922 LTGAGGGGcvI~Lak~~~~a~~I~~~L~~~~~~-~--~~~~~~~~l~~~G~~is~ 973 (974)
T PRK13412 922 LPGAGGGGYLYMVAKDPGAAERIRKILTENAPN-P--RARFVDMSLSDKGLQVSR 973 (974)
T ss_pred ecccCcccEEEEEECChhhHHHHHHHHHhcccC-C--ceeEEEEEECCCCeEEec
Confidence 9999998765 566677788888887764332 2 134558899999999875
No 42
>PRK01123 shikimate kinase; Provisional
Probab=99.97 E-value=1.8e-28 Score=229.05 Aligned_cols=260 Identities=21% Similarity=0.231 Sum_probs=188.1
Q ss_pred hhccccccc-ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCC
Q 017756 64 FDFLGCAVD-GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSG 142 (366)
Q Consensus 64 ~dv~g~~~~-~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaG 142 (366)
.+-.|.+.- ++|++++++..+ +.+.+.. ... .++.+ +.|++.++++.+++.++.+ .+++|+++++||.++|
T Consensus 18 ~~~~g~~~~i~l~~~v~v~~~~----~~~~~~~-~~~-~~~~~-~~~~v~~~~~~~~~~~~~~-~~~~i~i~s~IP~~~G 89 (282)
T PRK01123 18 ATGKGSAFGIDLKTTATVELSD----DGGGIEG-EIS-GNPDA-DTRLIERCVELVLERFGID-YGATVRTKSEIPLASG 89 (282)
T ss_pred hcCcccEEEeccEEEEEEEECC----CCceeee-ccc-CCCCC-CchHHHHHHHHHHHHhCCC-CCEEEEEecCCCCCCC
Confidence 344444332 366666665433 2333321 111 24434 3699999999999999875 5999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC---CCcchhhHhhhcCeEEEeecCCCceEEeeCCCcCce
Q 017756 143 LGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG---YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQL 219 (366)
Q Consensus 143 LGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g---~~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~ 219 (366)
||||||+++|++.+++++++.++++++|.++|..+|.++++ +++|+++++++||+++....+...+.+++ +++
T Consensus 90 LGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~~~~~~~~~----~~~ 165 (282)
T PRK01123 90 LKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNREMKLLKRDE----VEL 165 (282)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCCceEEEEec----CCc
Confidence 99999999999999999999999999999999999998764 36777778999999887543222333443 248
Q ss_pred EEEEEcCCCCcchHHHHHhC-CcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCchHHHHHHHH
Q 017756 220 LFVLVTPEFEAPTKKMRAAL-PAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVA 298 (366)
Q Consensus 220 ~~vl~~p~~~~sT~~~~~~l-~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~ 298 (366)
++++++|+..++|.+.+..+ +...++.+.+ ...++.+|+. ++|+.+++ .++....|. .+++..+
T Consensus 166 ~~vv~~p~~~~~T~~~r~~~l~~~~~~~d~~---------~~~~~~~~l~---~~~~~~~l--~~~~~l~~~-~~~i~~a 230 (282)
T PRK01123 166 DVLVLIPPEGAFSASADVERMKLIAPYVDMA---------FELALDGEYF---KAMTLNGL--LYSSALGFP-TEPALEA 230 (282)
T ss_pred EEEEEECCCCcchhhhhhhhchhcCcHHHHH---------HHHHhhccHH---HHHHhCCc--hhhhhhCCC-hHHHHHH
Confidence 89999999999999887664 5544433333 3334566765 44544422 232234455 4555667
Q ss_pred HHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 299 VEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 299 ~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
++.|++|+++||+||++++|++ ++..+++.+.|++. ++++++++++.|++++
T Consensus 231 ~~~Ga~ga~lSGaGptv~al~~-~~~~~~v~~~l~~~--------~~~~~~~~~~~G~~v~ 282 (282)
T PRK01123 231 LEAGAVGVGLSGTGPSYVAIVD-EEDPEEVKEAWEKY--------GKVIVTKINNEGARIL 282 (282)
T ss_pred HHCCCeEEEEecCCCeEEEEeC-CCCHHHHHHHHHhC--------CEEEEeeecCCCceeC
Confidence 8899999999999999999997 45677777777662 5799999999999875
No 43
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.4e-28 Score=214.32 Aligned_cols=309 Identities=43% Similarity=0.626 Sum_probs=232.3
Q ss_pred cceeEEEeeeeecccccChhcccccccccCCEEEEEEc--CCC--CCCc--EEEEe-ecCCC--CCCCCCCccHHHHHHH
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVD--PSV--HPGE--VSISE-VIGPS--KLSKNPLWNCAGIAAI 116 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~--~~~--~~~~--i~i~~-~~g~~--~~~~~~~~n~i~~a~~ 116 (366)
+.++.++.|+.-+|+|+++|++|.-.. .+..+.+.+. +.+ .++. ..++. ..|+. -++.+.+.|.|.+.+.
T Consensus 2 ~~~f~IkvpassaNigPg~dvlg~~l~-~~~sldv~v~~~~~~~t~s~p~~c~ltya~eg~G~~~v~l~vd~n~iT~t~l 80 (355)
T KOG1537|consen 2 SPSFPIKVPASSANIGPGLDVLGSVLR-CRASLDVLVAVEPEPVTVSVPTFCPLTYANEGPGFDFVGLAVDGNHITLTVL 80 (355)
T ss_pred CCCcccccccccCCCCCCeeeeeeeeE-EEEEEEEEEecccccccccCCCccceeeeccCCCccceeeeeccceEEEeee
Confidence 446788899999999999999998764 4444333332 210 0010 11111 11221 2233334565544333
Q ss_pred HHHHHhCCC--CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh----------------
Q 017756 117 SAMKMLGVR--SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE---------------- 178 (366)
Q Consensus 117 ~~~~~~g~~--~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e---------------- 178 (366)
..++.-++. ..+-++++.+-||.++|+|||.+...+.++..|+..++.+++..+...+..+|
T Consensus 81 yvlRcnnis~fp~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~G 160 (355)
T KOG1537|consen 81 YVLRCNNISIFPITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLG 160 (355)
T ss_pred eeEEeCcEeecccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHH
Confidence 333322221 23567889999999999999999999999999999999888766555433333
Q ss_pred ----------hhccCCCcchhhHhhhcCeEEEeecCCCce-EEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhH
Q 017756 179 ----------AKVSGYHADNIAPAIMGGFVLIRSYEPLDL-MRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPH 247 (366)
Q Consensus 179 ----------~~v~g~~~D~~a~~~~GG~~~~~~~~~~~~-~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~ 247 (366)
..+.+.+.|++.+...||+++.....+.++ +++.+++.+++++++++|+++.+|+++|..++..+++.+
T Consensus 161 Sflr~l~e~E~~~~~~~ad~ilp~~~gg~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vLPt~yp~~d 240 (355)
T KOG1537|consen 161 SFLRALLESEAKVSGYHADNILPAIMGGFVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVLPTEYPMVD 240 (355)
T ss_pred HHHHHhCHhhhhhcCCCHHHhcccccCCeeeecCCCcccccccccCCCCccceEEEEeccccccchhhhhhcCcccccee
Confidence 334445788888888999888877655555 666677668999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHhcCcccccccCCCCchHHHHHHHHHHc---CCeEEEeccccCceEEEecCcc
Q 017756 248 HIWNCSQAGALVAAVLNG-DPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEA---GAYGCTISGAGPTAVAVVDNEE 323 (366)
Q Consensus 248 ~i~~~~~~~~~~~al~~~-d~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~---Ga~ga~mSGsG~~~~~l~~~~~ 323 (366)
++++.+++..+..|+.++ |-..++..+..|+.||++|..++|.+++++..+... |++|..+||+|||..++.. +
T Consensus 241 ~V~NlqrlA~LttAl~~~p~n~~L~y~~m~DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAGPT~lAlat--e 318 (355)
T KOG1537|consen 241 HVWNLQRLAALTTALLEGPDNVMLGYALMSDKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAGPTALALAT--E 318 (355)
T ss_pred eeecHHHHHHHHHHHhcCCCchhhhhhhhhccccCccccccCccHHHHHHhhCcccCCceeeEEecCCCCeeEEEec--C
Confidence 999999999999999988 666677777789999999999999999999999887 9999999999999999986 5
Q ss_pred hHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEE
Q 017756 324 KGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 324 ~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i 358 (366)
+-+++.+++.++|.+.| .++++..+++--+|+.+
T Consensus 319 nf~eI~~~mv~~F~K~G-~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 319 NFQEIGEKMVEAFWKVG-HKCSVASLKPALDGAGV 352 (355)
T ss_pred cHHHHHHHHHHHHHhhC-ceeeeEeeccccCCcce
Confidence 78899999999999988 57889888865666654
No 44
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.95 E-value=2e-25 Score=203.86 Aligned_cols=223 Identities=21% Similarity=0.239 Sum_probs=165.0
Q ss_pred eEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCC--------CCHH--HH-HHHHHHhhhhccCC--CcchhhHhhhc
Q 017756 129 LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNK--------LLPD--EL-VIAGLESEAKVSGY--HADNIAPAIMG 195 (366)
Q Consensus 129 ~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~--------ls~~--eL-~~la~~~e~~v~g~--~~D~~a~~~~G 195 (366)
+++.+.+++|.|+|||||+|..++++.++..+.|.- ++++ +| -++|.+.|.-+||. +.||.+ |+||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV-~t~G 210 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAV-CTYG 210 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhh-hccC
Confidence 899999999999999999999999999999988752 2223 33 36899999999995 899987 8999
Q ss_pred CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcC---C-ChhHHHH-HHH-HHHHHHHHHHc----C
Q 017756 196 GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAE---V-GMPHHIW-NCS-QAGALVAAVLN----G 265 (366)
Q Consensus 196 G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~---~-~~~~~i~-~~~-~~~~~~~al~~----~ 265 (366)
|.+.+.. +..++.+... +.+++++++++++.+|+++.+.+... . ...+.+. ... ...+....+.+ .
T Consensus 211 g~i~f~k--g~~~~~Lk~~--~~L~illtnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~~~~ 286 (397)
T KOG1511|consen 211 GLISFKK--GVEIESLKHL--PPLRILLTNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQRENDEF 286 (397)
T ss_pred ceEEeec--CccceecccC--CCceEEEEccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9997754 3356666544 68999999999999999876544322 1 1222222 111 22334444442 1
Q ss_pred CHH---HHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEE--ecCcchHHHHHHHHHHHHHHcC
Q 017756 266 DPV---GLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAV--VDNEEKGKVIGEKMVEAFWKEG 340 (366)
Q Consensus 266 d~~---~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l--~~~~~~a~~v~~~l~~~~~~~g 340 (366)
+.. .+.+++..++-+....++++|.++.++...++.| +.+||+|+|.|++.+ .+ +..-++..+.+++.+..+|
T Consensus 287 ~~~~Eq~L~eLi~iNq~LL~alGVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL~-~~~~qe~i~~~ke~L~s~g 364 (397)
T KOG1511|consen 287 SSPKEQKLEELIRINQDLLDALGVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLLK-PGTEQEQIDKWKEELESHG 364 (397)
T ss_pred CCcHHHHHHHHHHHhHHHHHHhCCCcHHHHHHHHHHHHhC-cceecccCCCCceEEEEEC-CCCchHHHHHHHHHHHhcC
Confidence 111 4667665554477778899999999999999999 578999999997554 44 4444566778888888886
Q ss_pred CCceEEEEeeeCCCceEEEcc
Q 017756 341 NLKAVSMVKRLDRVGARLVGS 361 (366)
Q Consensus 341 ~~~~~~~~~~~~~~Ga~i~~~ 361 (366)
+.++.+.+..+|+++...
T Consensus 365 ---f~v~~t~lGG~G~~v~s~ 382 (397)
T KOG1511|consen 365 ---FEVFETELGGPGVSVHSA 382 (397)
T ss_pred ---cceeeccCCCCceEEEec
Confidence 789999999999998764
No 45
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.94 E-value=2.4e-25 Score=205.34 Aligned_cols=204 Identities=20% Similarity=0.206 Sum_probs=152.5
Q ss_pred ccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC---C
Q 017756 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG---Y 184 (366)
Q Consensus 108 ~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g---~ 184 (366)
.|++.++++.++++++.+ .+++|+++++||.++|||||||+++|++.+++++++++++.+++.+++.++|.++++ +
T Consensus 45 ~n~i~~~~~~~~~~~~~~-~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~ 123 (261)
T TIGR01920 45 PRLIERILTAIRSKFGIV-DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTG 123 (261)
T ss_pred hHHHHHHHHHHHHhcCCC-CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 489999999999998875 689999999999999999999999999999999999999999999999999998762 3
Q ss_pred CcchhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHH-HHhCCcCCChhHHHHHHHHHHHHHHHHH
Q 017756 185 HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKM-RAALPAEVGMPHHIWNCSQAGALVAAVL 263 (366)
Q Consensus 185 ~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~-~~~l~~~~~~~~~i~~~~~~~~~~~al~ 263 (366)
+.|+.+++++||+++.++.+...+.+++. +++++++++|+...+|+++ ++.++...+ .++.....++
T Consensus 124 ~~~D~~~~~~gG~~~~~~~~~~~~~~~~~---~~~~~vv~~p~~~~tt~~~~~~~l~~~~~---------~~~~~~~~~~ 191 (261)
T TIGR01920 124 AFDDAAASYLGGIVITDNRRMKILKRDKL---EGCTAAVLVPKEGERRENVDLNRFRRISP---------VVEEAFNLAL 191 (261)
T ss_pred cHHHHHHHHhCCEEEEeCCCceEEEecCC---CCceEEEEECCCCcccccccHHHhhhcch---------HHHHHHHHHh
Confidence 66666668999998877642222333433 3568899999998888655 444433211 2345566777
Q ss_pred cCCHHHHHHHHhcCcccc-cccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 264 NGDPVGLGKALSSDKIVE-PKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 264 ~~d~~~lg~~l~~~~~~~-~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
++|+. ++|+.++.+. ...... .++++.+++.|++|++|||+||++++|+++. +++.+.+++
T Consensus 192 ~~~l~---~am~~n~~l~~~~lg~~----~~~i~~a~~~Galga~lSGaG~sv~aL~~~~---~~v~~~~~~ 253 (261)
T TIGR01920 192 RGEYL---KAMVLNGVAYATALGYP----LEPASKALEAGAAAAGLSGKGPSYFALTEDP---EEAAEALME 253 (261)
T ss_pred hCCHH---HHHhhChHHhHHhhCCC----hHHHHHHHHcCCcEEeecCCCCeEEEEeCCH---HHHHHHHHh
Confidence 88876 4555554332 222211 2356778899999999999999999998732 455555544
No 46
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.94 E-value=4e-24 Score=191.51 Aligned_cols=282 Identities=24% Similarity=0.343 Sum_probs=192.2
Q ss_pred eEEEeeeeecccccChhcccc--ccc-c----c-CCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGC--AVD-G----L-GDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMK 120 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~--~~~-~----l-~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~ 120 (366)
+++++|.|+ ++|- .|..|. |++ + | +.+++|+..+. +.+.+ +. .....+..+.+..
T Consensus 2 v~v~tpSrl-H~gl-iDl~G~~GRv~GgvG~aLe~P~l~i~~~~s---~~~~~-----------~g-e~~~~~~~~~a~~ 64 (312)
T COG1907 2 VRVRTPSRL-HAGL-IDLNGSIGRVDGGVGLALEEPRLEIEAKPS---DDIEV-----------DG-EDRRERVEKAARL 64 (312)
T ss_pred eEEecCcee-eecc-ccCCCcccceecceeEEeeCCceEEEEecc---ccccc-----------cc-hhhHHHHHHHHHH
Confidence 689999999 9984 576654 333 1 1 12344443332 22222 11 1221344444444
Q ss_pred HhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEE
Q 017756 121 MLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLI 200 (366)
Q Consensus 121 ~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~ 200 (366)
.+... .+++|+|.+.||.+.||||+++.+.|+..+++++++++++.+||+....+.+.. | .. ++++-+||+++.
T Consensus 65 ~le~~-~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tS--g--iG-v~afe~GGFIVD 138 (312)
T COG1907 65 VLEVG-EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTS--G--IG-VYAFEYGGFIVD 138 (312)
T ss_pred hhccc-CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCcc--c--ee-EEEEEECCEEEE
Confidence 44442 589999999999999999999999999999999999999999988766665532 2 12 234789999987
Q ss_pred eecCC--------CceEEeeCCCcCceEEEEEcCCCCc--ch---HHHHHhCCcCCC-hhHHHHHHHHHHHHHHHHHcCC
Q 017756 201 RSYEP--------LDLMRLNFPEKKQLLFVLVTPEFEA--PT---KKMRAALPAEVG-MPHHIWNCSQAGALVAAVLNGD 266 (366)
Q Consensus 201 ~~~~~--------~~~~~l~~~~~~~~~~vl~~p~~~~--sT---~~~~~~l~~~~~-~~~~i~~~~~~~~~~~al~~~d 266 (366)
.+... ..+.+..+| .+|++++++|+.+. +- .++++++..... ..+.+.. ..+.+++.|+.++|
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfP--edW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~-~vLm~mmPavvE~D 215 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFP--EDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSH-RVLMKMMPAVVERD 215 (312)
T ss_pred CCcccCcccCCCCceeeeecCC--CceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhHHHHhhC
Confidence 65411 125666776 68999999998653 22 234555433221 1222221 13678899999999
Q ss_pred HHHHHHHHhcCcc-----cccccC-CCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcC
Q 017756 267 PVGLGKALSSDKI-----VEPKRA-PLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEG 340 (366)
Q Consensus 267 ~~~lg~~l~~~~~-----~~~~~~-~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g 340 (366)
++.|++.++.-|. +++.-. ..++.+.++++.+.+. ++++.+|.+|||+|++++++ .+.++...+.+.+.+++
T Consensus 216 ie~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqSSwGPtvY~i~d~~-~~~~~~~~~~~~~~~~g 293 (312)
T COG1907 216 IESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQSSWGPTVYGIVDSR-EAGSVVRKLIDILLEEG 293 (312)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-cccccccccCCEEEEecccc-ccchHHHHHHHHHHhcC
Confidence 9999999874211 122111 2357899999999998 79999999999999999854 44445556666677776
Q ss_pred CCceEEEEeeeCCCceEEE
Q 017756 341 NLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 341 ~~~~~~~~~~~~~~Ga~i~ 359 (366)
..+++++++++|.|+.|+
T Consensus 294 -~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 294 -IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred -CceEEEEeccCCCCceec
Confidence 579999999999999886
No 47
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.91 E-value=4.4e-22 Score=186.59 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=180.9
Q ss_pred hcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCC
Q 017756 65 DFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLG 144 (366)
Q Consensus 65 dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLG 144 (366)
+.++..+|.++.+++|+..++...+.+.+ +|. ++.+...+.+.++++.+++.++.+ .+++|+++++||.++|||
T Consensus 28 ~SisltLd~~~T~ttv~~~~~~~~d~~~l---nG~--~~~~~~~~~v~~~l~~~~~~~~~~-~~v~I~~~n~iP~~aGLg 101 (305)
T TIGR01240 28 SSISLTLSQLRTLTSVAFADEFERDTFYL---NGT--LQHSIDNEKTSNCLDDFRQLRKEQ-EKLHIVSQNNFPTAAGLA 101 (305)
T ss_pred CeeEEEcCCCccEEEEEECCCCCcceEEE---CCc--CCCCcchHHHHHHHHHHHHhcCCC-CceEEEEecCCCCCCccc
Confidence 34555555677777777665422234444 342 333445667877788888888774 589999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeec-CC--CceEEeeCCC-cCce-
Q 017756 145 SSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSY-EP--LDLMRLNFPE-KKQL- 219 (366)
Q Consensus 145 SSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~-~~--~~~~~l~~~~-~~~~- 219 (366)
||||.++|++.|++++++++++.++|.+++.+.+... +++++||++.+... ++ ...++++.+. ++++
T Consensus 102 SSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa--------~~s~~GG~v~~~~g~~~~~s~a~~i~~~~~~~~~~ 173 (305)
T TIGR01240 102 SSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSA--------CRSLFGGYVAWEKGKDDHSSAAVQVADDSDWPQXA 173 (305)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCe--------eeeeecCeEEEEcCCCCCCeeEEECCCccccccce
Confidence 9999999999999999999999999999999987432 34799999877542 12 2345555431 1123
Q ss_pred EEEEEcCCCCc---chHHHHHhCCcCCChhHHHHHHH-HHHHHHHHHHcCCHHHHHHHHhcC--cccccccCC------C
Q 017756 220 LFVLVTPEFEA---PTKKMRAALPAEVGMPHHIWNCS-QAGALVAAVLNGDPVGLGKALSSD--KIVEPKRAP------L 287 (366)
Q Consensus 220 ~~vl~~p~~~~---sT~~~~~~l~~~~~~~~~i~~~~-~~~~~~~al~~~d~~~lg~~l~~~--~~~~~~~~~------~ 287 (366)
.++++.|+.+. ||+.++..++....+.+.+.+.. ++..++.++.++|++.+++....| .+|.-.... .
T Consensus 174 ~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~ 253 (305)
T TIGR01240 174 MCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYL 253 (305)
T ss_pred EEEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 45566666554 78888888877766666665433 688899999999999999976654 223222211 1
Q ss_pred Cch---HHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHH
Q 017756 288 IPG---MEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEA 335 (366)
Q Consensus 288 ~p~---l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~ 335 (366)
.|+ +-+.++.+++.|...+....+||.++.|+. +++.+++.+.+++.
T Consensus 254 ~~~s~~ii~~v~~~r~~g~~~~~T~DAGpNv~vl~~-~~~~~~v~~~~~~~ 303 (305)
T TIGR01240 254 NDTSKRAMSAVHTLRQGGTICYFTMDAGPNVKVLYL-AENLSKLFEFIYKL 303 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEcCCCCEEEEEc-cccHHHHHHHHHHh
Confidence 243 444555566678777888899999999997 56788888777664
No 48
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.89 E-value=2.5e-21 Score=172.07 Aligned_cols=271 Identities=22% Similarity=0.247 Sum_probs=175.9
Q ss_pred cceeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCC
Q 017756 46 FTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVR 125 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~ 125 (366)
|...+..+-++|.|.- -+..|.+. ++.-.+++++... ++..+. +. + ..+.+++.+.++.+++++|+.
T Consensus 2 ~~~a~A~g~~TIiNAi--atG~G~Af-gidL~v~a~v~~~---~~~~~~---~~---~-~~d~~li~~~~~~v~e~~g~~ 68 (278)
T COG1685 2 MGRARAYGGGTIINAI--ATGKGSAF-GIDLKVEAEVRLS---DEGKVR---GE---P-EGDTRLIERCVERVREKYGIP 68 (278)
T ss_pred CceEEecCceeEeeeh--hcCcccee-eecceEEEEEEEc---Cccccc---cC---C-CCChHHHHHHHHHHHHHcCCC
Confidence 4455666667777775 46678777 3555566555443 222221 22 1 113578889999999999985
Q ss_pred CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----hhhhccCCCcchhhHhhhcCeEEEe
Q 017756 126 SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLE----SEAKVSGYHADNIAPAIMGGFVLIR 201 (366)
Q Consensus 126 ~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~----~e~~v~g~~~D~~a~~~~GG~~~~~ 201 (366)
.+++++++++||.++||.||||.+.|++.|+.++.+.++++.++..++.+ .+..+.|. .|..+++++||.++.+
T Consensus 69 -~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA-~DDa~AS~~GG~~iTD 146 (278)
T COG1685 69 -LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGA-FDDACASYLGGIVITD 146 (278)
T ss_pred -cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEecc-chHHHHHHhCCeEEec
Confidence 68999999999999999999999999999999999999999999876544 44445554 4555668999999988
Q ss_pred ecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccc
Q 017756 202 SYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVE 281 (366)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~ 281 (366)
+++...+.+.+. ++++++|..|+.+..++++ +- .+.+.+.. .+......-..|+|.. +|.-+-++-
T Consensus 147 N~~m~Ilrr~~~---~~~~vlI~~p~~k~~~~~v----dv--~~~r~~a~--~~e~A~~lA~~G~~~~---Am~lNG~~y 212 (278)
T COG1685 147 NRKMRILRRLDL---PELTVLILAPGEKRLSANV----DV--NRLRLIAP--VVEEAFRLALKGEYFK---AMVLNGILY 212 (278)
T ss_pred chhheehhcccc---CCceEEEEecCCccccccC----CH--HHHHHhhH--HHHHHHHHHhcccHHH---HHHHhHHHH
Confidence 875444444444 4889999999976555421 10 00011100 0111222223566542 222111111
Q ss_pred cccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 282 PKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 282 ~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
..... +| -++...+.+.|+.++.+||.||+.|+|++++ +++ .+.|.+. ++++.+++.+.+++..
T Consensus 213 ~~aLG-~~--~e~~~~ale~GA~~aglSGtGPa~~Al~~~~---~~v----~ea~~~~----G~V~~t~~~~~~~~~~ 276 (278)
T COG1685 213 CSALG-YD--LEPALKALEAGAAAAGLSGTGPAYFALTEDP---EEV----AEAWSKI----GDVIETRNVGERARDY 276 (278)
T ss_pred HHHhC-CC--hHHHHHHHhcccceeccCCCCCceEEEecCc---HHH----HHHHHhC----CeEEEEecCCCCceec
Confidence 11111 11 1234567788999999999999999999865 333 4445554 5799999988888764
No 49
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.84 E-value=1.8e-18 Score=169.06 Aligned_cols=244 Identities=16% Similarity=0.101 Sum_probs=164.2
Q ss_pred ccHHHHHHHHHHHHhCC---C---CcceEEEEeeCC-------------------C--------CCCCCChHHHHHHHHH
Q 017756 108 WNCAGIAAISAMKMLGV---R---SVGLSLSLEKGL-------------------P--------LGSGLGSSAASAAAAA 154 (366)
Q Consensus 108 ~n~i~~a~~~~~~~~g~---~---~~g~~I~i~~~I-------------------P--------~gaGLGSSSA~aaA~l 154 (366)
..+|..++..+..++.. + ..+++|+|.++. + .+.|||||+|.++|++
T Consensus 87 n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v 166 (454)
T TIGR01219 87 NPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALV 166 (454)
T ss_pred ChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHH
Confidence 45777777766665532 2 347899996665 2 2699999999999999
Q ss_pred HHHHHHhCCCC-------------CHHHHHHHHHHhhhhccC---CCcchhhHhhhcCeEEEeecCC-------------
Q 017756 155 VAVNEMFGNKL-------------LPDELVIAGLESEAKVSG---YHADNIAPAIMGGFVLIRSYEP------------- 205 (366)
Q Consensus 155 ~al~~l~~~~l-------------s~~eL~~la~~~e~~v~g---~~~D~~a~~~~GG~~~~~~~~~------------- 205 (366)
.||..+++..+ +.+++.++|+.++..++| .+.|..+ ++|||.++.++.+.
T Consensus 167 ~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAa-avyGgi~Y~rfd~~~l~~~~~~~~~~~ 245 (454)
T TIGR01219 167 AALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSA-AVYGSQRYRRFSPELISFLQVAITGLP 245 (454)
T ss_pred HHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhh-hhcCceEEEecChhhhhhhhccccccc
Confidence 99999999887 788999999999999887 2789654 89999766554211
Q ss_pred --------------CceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCC----ChhHHH-HHHHHH-----H-----
Q 017756 206 --------------LDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEV----GMPHHI-WNCSQA-----G----- 256 (366)
Q Consensus 206 --------------~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~----~~~~~i-~~~~~~-----~----- 256 (366)
..++++..| ++++++|.+++.+.+|+.+.+++.+.+ ...+.+ ...... .
T Consensus 246 ~~~~L~~~v~~~W~~~i~~l~lP--~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~~l~~aN~~~~~~l~~l 323 (454)
T TIGR01219 246 LNEVLGTIVKGKWDNKRTEFSLP--PLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENWQNLSDANLELETKLNDL 323 (454)
T ss_pred hhhhHHHHhccCCCCceeeccCC--CCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 033455555 789999999999999998876653221 111111 111000 0
Q ss_pred ------------HHHHHHHcC--------CHHHHHHHHhcCcccc----cccC--CCCchHHHHHHHHHHc-CCeEEEec
Q 017756 257 ------------ALVAAVLNG--------DPVGLGKALSSDKIVE----PKRA--PLIPGMEAVKKVAVEA-GAYGCTIS 309 (366)
Q Consensus 257 ------------~~~~al~~~--------d~~~lg~~l~~~~~~~----~~~~--~~~p~l~~l~~~~~~~-Ga~ga~mS 309 (366)
.+++.+.++ |+..+.+.+...+.+. .... ...|++.+|++.+.+. |+++++.+
T Consensus 324 ~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vp 403 (454)
T TIGR01219 324 SKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVP 403 (454)
T ss_pred hhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecC
Confidence 111223334 5555655555432211 1111 2358899999999885 88999999
Q ss_pred cccCc--eEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 310 GAGPT--AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 310 GsG~~--~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
|||++ +|+|+.+..+ +.+.+.+.|...+ .....++.+..|++++.
T Consensus 404 GAGGgDa~~~l~~~~~~---~~~~~~~~W~~~~---V~pL~v~~~~~G~~~e~ 450 (454)
T TIGR01219 404 GAGGFDAIFAITLGDVD---SGTKLTQAWSSHN---VLALDVREAPHGVCLES 450 (454)
T ss_pred CCCccceEEEEecCChH---HHHHHHHHHhhCC---EEEEeccccCCcccccC
Confidence 99996 6888765332 4456777787654 56677778789999866
No 50
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.6e-16 Score=151.91 Aligned_cols=284 Identities=21% Similarity=0.264 Sum_probs=168.7
Q ss_pred ceeEEEeeeeecccccChhccccccc--ccCCEEEEEEcCCCCCCc--EEEEeecCCC-----CCCC---------CCCc
Q 017756 47 TSVKTFAPATVANLGPCFDFLGCAVD--GLGDYVSLKVDPSVHPGE--VSISEVIGPS-----KLSK---------NPLW 108 (366)
Q Consensus 47 ~~~~~~aPaki~nlGe~~dv~g~~~~--~l~~~v~v~~~~~~~~~~--i~i~~~~g~~-----~~~~---------~~~~ 108 (366)
....+++|||++++|||.|+.+..++ ++...+.+.+.+. ++.. +++.+.+.+. .+|. ..|.
T Consensus 38 p~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~-~d~~~sl~~tN~~~~f~~~~~~~p~~~~~I~~~~~~w~ 116 (489)
T KOG0631|consen 38 PVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPS-DDGIVSLRLTNFNPDFIYFKYPLPSIVWQIDPDVSKWE 116 (489)
T ss_pred ceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEc-CCCceeEEEecCCCccceeeccCCchhcccCCCccchh
Confidence 35789999999999999998877554 2222222222222 1133 4443222111 1221 3589
Q ss_pred cHH---HHHHHHHHHHhCCC-C--cceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhhh
Q 017756 109 NCA---GIAAISAMKMLGVR-S--VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMF-GNK--LLPDELVIAGLESEA 179 (366)
Q Consensus 109 n~i---~~a~~~~~~~~g~~-~--~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~-~~~--ls~~eL~~la~~~e~ 179 (366)
||+ .+++..+.+..+.. . .|+.+...+++|.|+||.|||+...+...|..++. |-+ .++++++.+....|+
T Consensus 117 ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~ 196 (489)
T KOG0631|consen 117 NYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAES 196 (489)
T ss_pred hhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeec
Confidence 998 44444444322322 2 38999999999999999999999999888888887 777 788999999888888
Q ss_pred hc--cCCCcchhhHhhhc--CeEEEeec--CCCceEEeeCCCcCce-EEEEEcCCCCc----------------------
Q 017756 180 KV--SGYHADNIAPAIMG--GFVLIRSY--EPLDLMRLNFPEKKQL-LFVLVTPEFEA---------------------- 230 (366)
Q Consensus 180 ~v--~g~~~D~~a~~~~G--G~~~~~~~--~~~~~~~l~~~~~~~~-~~vl~~p~~~~---------------------- 230 (366)
++ ..++|||.+ +++| |.+++... .+.+...++++ +. .+++...-...
T Consensus 197 ~~G~~~gGmdq~a-svl~~~~~Al~v~~~~~Pf~~~~lk~~---~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~ 272 (489)
T KOG0631|consen 197 YIGLNSGGMDQAA-SVLAEKGHALLVDPYFTPFRRSMLKLP---DGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAG 272 (489)
T ss_pred ccCcCCCcHHHHH-HHHHhcCceEEecccCCccccccccCC---CCceEEEechhhhhcchhhhhhhhhceeEeeehhhH
Confidence 65 345899987 5666 66654331 12222233322 22 23332221100
Q ss_pred --------chH-----------------------------------------------------HHHHhCCcCC------
Q 017756 231 --------PTK-----------------------------------------------------KMRAALPAEV------ 243 (366)
Q Consensus 231 --------sT~-----------------------------------------------------~~~~~l~~~~------ 243 (366)
.+. +..+.+....
T Consensus 273 ~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~ 352 (489)
T KOG0631|consen 273 ELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAVDLQV 352 (489)
T ss_pred HHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccchhhHH
Confidence 011 0000000000
Q ss_pred ----ChhHHHH-HHHHHHHHHHHHHc------CCHHHHHHHHhcCccccccc---CCCCchHHHHHHHHHHcCCeEEEec
Q 017756 244 ----GMPHHIW-NCSQAGALVAAVLN------GDPVGLGKALSSDKIVEPKR---APLIPGMEAVKKVAVEAGAYGCTIS 309 (366)
Q Consensus 244 ----~~~~~i~-~~~~~~~~~~al~~------~d~~~lg~~l~~~~~~~~~~---~~~~p~l~~l~~~~~~~Ga~ga~mS 309 (366)
.+.+++. +..++.+....+.+ |.+..||++|+.+ +.... ..++|++++|.+.+++.|+.|++++
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS--~~Sc~~~yEcscpel~qL~kiala~g~~gaRlT 430 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNES--HRSCDVLYECSCPELDQLCKIALANGGVGARLT 430 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhh--hHHHHHHHhcCCHhHHHHHHHHHhcCCccceee
Confidence 0112221 22233333333333 3356789999887 44433 3578999999999999999999999
Q ss_pred cccCceEEEecC-cchHHHHHHHHHHHHH
Q 017756 310 GAGPTAVAVVDN-EEKGKVIGEKMVEAFW 337 (366)
Q Consensus 310 GsG~~~~~l~~~-~~~a~~v~~~l~~~~~ 337 (366)
|+|.|++++..- .+..+.+.+.+++.+-
T Consensus 431 GaGwGGc~v~lvp~d~~~~~~~~~~~~~Y 459 (489)
T KOG0631|consen 431 GAGWGGCTVALVPADLVDFAVAALKEIYY 459 (489)
T ss_pred ccccccceeeeccccchHHHHHhhhhhhh
Confidence 999987654431 3566777777666543
No 51
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.74 E-value=2.1e-15 Score=141.26 Aligned_cols=271 Identities=19% Similarity=0.177 Sum_probs=164.1
Q ss_pred eeEEEeeeeecccccChhccccccc-----------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccH
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD-----------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNC 110 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~-----------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~ 110 (366)
..+++||--|+++ .|.|++-. .++...+|+..+..+.+.+.+ +|+ ..+. ...-
T Consensus 3 ~~ta~A~~NIALI----KYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~L---NG~-~~~~--~~~r 72 (343)
T PLN02407 3 MVTAQAPTNIAVI----KYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWL---NGK-EISL--SGGR 72 (343)
T ss_pred EEEEEecceeeee----hhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEE---CCE-ecCc--ccHH
Confidence 3677888777544 66676543 244555555544322244444 243 1221 1225
Q ss_pred HHHHHHHHHHHhCC-------------CCc--ceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Q 017756 111 AGIAAISAMKMLGV-------------RSV--GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLL-PDELVIAG 174 (366)
Q Consensus 111 i~~a~~~~~~~~g~-------------~~~--g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls-~~eL~~la 174 (366)
+.+.+..+++..+. +.. .++|..++++|.++|||||||..+|++.|++++++++++ .++|..+|
T Consensus 73 v~~~l~~~r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lA 152 (343)
T PLN02407 73 YQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIA 152 (343)
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 55667777765554 101 244555559999999999999999999999999999999 99999998
Q ss_pred HHhhhhccCCCcchhhHhhhcCeEEEeec---CCCc--eEEeeCC-CcCceEEEE-EcCCC--C-cchHHHHHhCCcCCC
Q 017756 175 LESEAKVSGYHADNIAPAIMGGFVLIRSY---EPLD--LMRLNFP-EKKQLLFVL-VTPEF--E-APTKKMRAALPAEVG 244 (366)
Q Consensus 175 ~~~e~~v~g~~~D~~a~~~~GG~~~~~~~---~~~~--~~~l~~~-~~~~~~~vl-~~p~~--~-~sT~~~~~~l~~~~~ 244 (366)
+.. .+.| +.+++||++.+... ++.. .+++... .++++.+++ +.+.. + .||..+..-.....-
T Consensus 153 r~G------SGSa--~rS~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~ 224 (343)
T PLN02407 153 RQG------SGSA--CRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPL 224 (343)
T ss_pred hcc------ChHH--HHHhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChh
Confidence 843 2444 34799999988643 2222 3344322 123444433 22322 2 356655544433321
Q ss_pred hhHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhcC--cccccccCC------CCch---HHHHHHHHHHc-CC-eEEEec
Q 017756 245 MPHHIWN--CSQAGALVAAVLNGDPVGLGKALSSD--KIVEPKRAP------LIPG---MEAVKKVAVEA-GA-YGCTIS 309 (366)
Q Consensus 245 ~~~~i~~--~~~~~~~~~al~~~d~~~lg~~l~~~--~~~~~~~~~------~~p~---l~~l~~~~~~~-Ga-~ga~mS 309 (366)
+...+.. .+++.++..||+++|+..||++...+ ++|.-.... ..|+ +-++++.+++. |. ..+...
T Consensus 225 ~~~w~~~~~~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~ 304 (343)
T PLN02407 225 LQHRAKEVVPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTF 304 (343)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 2223322 34678899999999999999976544 233322211 1233 45555666653 64 467788
Q ss_pred cccCceEEEecCcchHHH-HHHHHHHHHH
Q 017756 310 GAGPTAVAVVDNEEKGKV-IGEKMVEAFW 337 (366)
Q Consensus 310 GsG~~~~~l~~~~~~a~~-v~~~l~~~~~ 337 (366)
.+||.+..|+.. ++.++ +.+.+.+.+.
T Consensus 305 DAGPNv~vl~~~-~~~~~~v~~~~~~~~~ 332 (343)
T PLN02407 305 DAGPNAVLIALN-RKVAAQLLQRLLYYFP 332 (343)
T ss_pred cCCCCEEEEECh-hhhHHHHHHHHHHhcC
Confidence 999999999984 45554 7766666543
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.71 E-value=7.3e-15 Score=136.51 Aligned_cols=218 Identities=19% Similarity=0.188 Sum_probs=149.2
Q ss_pred ccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcc
Q 017756 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187 (366)
Q Consensus 108 ~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D 187 (366)
...+.++++.+++++|.. -+++|+.+++.|.++|||||||.+||+..|++++++++++.++|.++|+.+...
T Consensus 71 ~~k~~~~ld~~R~~~~~~-~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGS------- 142 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS-FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGS------- 142 (329)
T ss_pred HHHHHHHHHHHHHhhccc-ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccc-------
Confidence 456778888888888874 689999999999999999999999999999999999999999999999875532
Q ss_pred hhhHhhhcCeEEEeecCCCc-----eEEeeCCCcCceEEEEEcCCCC-cchHHHHHhCCcCCC-hhHHHHHH-HHHHHHH
Q 017756 188 NIAPAIMGGFVLIRSYEPLD-----LMRLNFPEKKQLLFVLVTPEFE-APTKKMRAALPAEVG-MPHHIWNC-SQAGALV 259 (366)
Q Consensus 188 ~~a~~~~GG~~~~~~~~~~~-----~~~l~~~~~~~~~~vl~~p~~~-~sT~~~~~~l~~~~~-~~~~i~~~-~~~~~~~ 259 (366)
.+.+++||++++.+..|.. +.++.++.....-++++.|..+ +++.+..+......+ +.+++... .....+.
T Consensus 143 -a~RS~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~~~~~~~m~ 221 (329)
T COG3407 143 -ASRSIFGGFVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEHSEEDLEEMK 221 (329)
T ss_pred -hhhhhcCCeeEeccCCCCccceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHHHHHHHHhHHHHH
Confidence 2457999997776543322 3333333112344566667654 666666655222222 22333221 2346788
Q ss_pred HHHHcCCHHHHHHHHhcCc--ccccccCC------CCchHHHHHHH---HHHcCCeEEEeccccCceEEEecCcchHHHH
Q 017756 260 AAVLNGDPVGLGKALSSDK--IVEPKRAP------LIPGMEAVKKV---AVEAGAYGCTISGAGPTAVAVVDNEEKGKVI 328 (366)
Q Consensus 260 ~al~~~d~~~lg~~l~~~~--~~~~~~~~------~~p~l~~l~~~---~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v 328 (366)
.+++++|++.+++...+|. +|.-.+.. ..++-.++++. +++.|-..+...-+||.++.++. +++.+++
T Consensus 222 ~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGPnV~v~~~-~~~l~~~ 300 (329)
T COG3407 222 EAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGPNVKVITL-EENLIDL 300 (329)
T ss_pred HHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCCCceEEEEe-cccHHHH
Confidence 9999999999999877652 23222221 23444444444 44434355778899999999997 5677777
Q ss_pred HHHHHHH
Q 017756 329 GEKMVEA 335 (366)
Q Consensus 329 ~~~l~~~ 335 (366)
.+.+.+.
T Consensus 301 ~~~~~~~ 307 (329)
T COG3407 301 LEILKTL 307 (329)
T ss_pred HHHHhhc
Confidence 7777663
No 53
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=4.6e-15 Score=130.66 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=139.5
Q ss_pred HHHHHHHHHhCCC---CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchh
Q 017756 113 IAAISAMKMLGVR---SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNI 189 (366)
Q Consensus 113 ~a~~~~~~~~g~~---~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~ 189 (366)
+..+..+.+++++ ..|+++.+.++||.|.||+||+||.+|+++|+...++.++++.+|+++|..+|. .|.+
T Consensus 65 ~~~e~~la~~~~~~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEP------tDsi 138 (293)
T COG4542 65 KFKENILARWGVTKLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEP------TDSI 138 (293)
T ss_pred HHHHHHHHHhCccceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCC------ccce
Confidence 4446677777764 357999999999999999999999999999999999999999999999999994 5633
Q ss_pred hHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHH-HHHHHHHHHHcCCHH
Q 017756 190 APAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCS-QAGALVAAVLNGDPV 268 (366)
Q Consensus 190 a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~-~~~~~~~al~~~d~~ 268 (366)
+|-+.++++..++..++-+... |.+.++++.++..+.|.+.. +.+..........+.+ ....+..|+..+|..
T Consensus 139 ---iF~~~tlFd~r~g~~~~~~g~~--PpL~ilv~e~~~~v~T~~y~-q~~r~e~~~~~~~e~~~l~~~v~~A~~~~~~~ 212 (293)
T COG4542 139 ---IFDKATLFDQREGRVIEFLGEM--PPLHILVFEGKGTVETVDYN-QPPRGEKLLAPLAELGNLINLVEKALKVGDPK 212 (293)
T ss_pred ---ecccceeehhccchHHHhcCCC--CceEEEEEcCCCceeeeecc-CCchhhhhhhhHHHHHHHHHHHHHHHccCCHH
Confidence 5677777776655444433322 68899999999888886532 2221110011112222 234456899999999
Q ss_pred HHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecC
Q 017756 269 GLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDN 321 (366)
Q Consensus 269 ~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~ 321 (366)
.+|++.+-+......+ ...|.++++.+..++.+++|.-.+.||. +.+|..|
T Consensus 213 ~lG~AAT~SAv~~Q~~-LPK~~~~~lL~l~e~~~~~Gv~VAHSGt-mlGli~D 263 (293)
T COG4542 213 LLGEAATLSAVKNQDR-LPKPGLNELLRLVEETCAIGVIVAHSGT-MLGLIYD 263 (293)
T ss_pred HHHHHHHHHHHhhccc-cCchhHHHHHHHHHHhcccceEEeccCc-eEEeeec
Confidence 9999876442111111 2358899999999999999999999998 4454443
No 54
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=99.65 E-value=9.1e-14 Score=125.86 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=133.8
Q ss_pred ceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeec---C
Q 017756 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSY---E 204 (366)
Q Consensus 128 g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~---~ 204 (366)
.++|...+|.|..+||.||+|--||++.+|+++|+++.+++||..+|+..... ...++|||++.+.-. +
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGS--------ACRSl~GG~V~W~mG~~~D 176 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGS--------ACRSLYGGFVAWEMGELDD 176 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCch--------hhhhhhcceeEeecccccC
Confidence 57788889999999999999999999999999999999999999999875432 235699999987422 2
Q ss_pred C---CceEEeeCCCcCceEEEEEc-CCC---CcchHHHHHhCCcCCChhHHHHH--HHHHHHHHHHHHcCCHHHHHHHHh
Q 017756 205 P---LDLMRLNFPEKKQLLFVLVT-PEF---EAPTKKMRAALPAEVGMPHHIWN--CSQAGALVAAVLNGDPVGLGKALS 275 (366)
Q Consensus 205 ~---~~~~~l~~~~~~~~~~vl~~-p~~---~~sT~~~~~~l~~~~~~~~~i~~--~~~~~~~~~al~~~d~~~lg~~l~ 275 (366)
| .-++..+...+++++++++. .+. ..||+-+++......-+.+.+.+ .++..+|.+++.+.|++.|+++..
T Consensus 177 GsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~FA~lTm 256 (395)
T KOG2833|consen 177 GSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQMREAIRERDFESFAKLTM 256 (395)
T ss_pred CCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 2 22344444445677765443 332 24787777655332112222222 346788999999999999999754
Q ss_pred cC-cccccccCCCCchH-------HHHHHHHHH----cC-CeEEEeccccCceEEEecCcchHHHHHHHHHHHHH
Q 017756 276 SD-KIVEPKRAPLIPGM-------EAVKKVAVE----AG-AYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 276 ~~-~~~~~~~~~~~p~l-------~~l~~~~~~----~G-a~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~ 337 (366)
.| +.+.......+|.+ -.+++...+ .| ...|..-.+||..+.++.+ ++..++.+.+.+.|+
T Consensus 257 ~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~-e~~~~~l~~~~~~f~ 330 (395)
T KOG2833|consen 257 KDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLE-ENVSQLLAAVLKVFP 330 (395)
T ss_pred hcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhh-hhHHHHHHHHHHhcC
Confidence 33 33444444455432 334444433 23 3567888999998888774 455566666665444
No 55
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.43 E-value=4.9e-13 Score=97.29 Aligned_cols=65 Identities=42% Similarity=0.616 Sum_probs=58.9
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcC
Q 017756 130 SLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGG 196 (366)
Q Consensus 130 ~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG 196 (366)
+|+++++||.++|||||||+++|++.++++++++++++++|.+++..+|..+ |. +.|+ ++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~-g~~~g~d~-~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYI-GKPSGIDD-AASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHC-SSSHSHHH-HHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHc-CCCChhhH-HHHHhCc
Confidence 5899999999999999999999999999999999999999999999999666 53 6776 4589987
No 56
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.29 E-value=3.1e-12 Score=97.40 Aligned_cols=80 Identities=31% Similarity=0.558 Sum_probs=68.7
Q ss_pred HHHHHHcCCHHHHHHHHhcCccccc--ccCCCCchHHHHHHHHHHcCCeEEEeccc--cCceEEEecCcchHHHHHHHHH
Q 017756 258 LVAAVLNGDPVGLGKALSSDKIVEP--KRAPLIPGMEAVKKVAVEAGAYGCTISGA--GPTAVAVVDNEEKGKVIGEKMV 333 (366)
Q Consensus 258 ~~~al~~~d~~~lg~~l~~~~~~~~--~~~~~~p~l~~l~~~~~~~Ga~ga~mSGs--G~~~~~l~~~~~~a~~v~~~l~ 333 (366)
|++||.++|++.++++|++++..++ .+...+|+++++++.+++.|+++++|||| ||++|+|+++++.++++.++++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 5789999999999999987643224 55567899999999999999999999999 8899999977889999999998
Q ss_pred HHHH
Q 017756 334 EAFW 337 (366)
Q Consensus 334 ~~~~ 337 (366)
+.|+
T Consensus 81 ~~~~ 84 (85)
T PF08544_consen 81 EHYK 84 (85)
T ss_dssp HHTH
T ss_pred HhCC
Confidence 8654
No 57
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.5e-09 Score=102.95 Aligned_cols=232 Identities=19% Similarity=0.176 Sum_probs=144.0
Q ss_pred HHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHH----HHHHhhhhcc--CCCcchh
Q 017756 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVI----AGLESEAKVS--GYHADNI 189 (366)
Q Consensus 116 ~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~----la~~~e~~v~--g~~~D~~ 189 (366)
+.+.+.++ .|++|+..+++|.|+|||.||-.+...+.|+...-+.-..-+.|.. -..++|.... |+.+||+
T Consensus 682 d~~~k~f~---~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~ 758 (948)
T KOG4644|consen 682 DIFEKLFC---CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQC 758 (948)
T ss_pred HHHHHHhc---CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhc
Confidence 34445554 4899999999999999999999999999999999887665554443 3445676443 3589998
Q ss_pred hHhhhcCeEEEeec----CCCceEEeeCCC----cCceEEEEEcCCCCcchHHHHHhCCcC----CChhHHH-----HHH
Q 017756 190 APAIMGGFVLIRSY----EPLDLMRLNFPE----KKQLLFVLVTPEFEAPTKKMRAALPAE----VGMPHHI-----WNC 252 (366)
Q Consensus 190 a~~~~GG~~~~~~~----~~~~~~~l~~~~----~~~~~~vl~~p~~~~sT~~~~~~l~~~----~~~~~~i-----~~~ 252 (366)
. .++-|+...+-+ -+...+++.++. ..+-++++++++.. .-+++.+.+. +.+.... ...
T Consensus 759 G-~im~GIK~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT---RLAkNLLQdViRn~far~~a~~Q~ah~l~ 834 (948)
T KOG4644|consen 759 G-AIMEGIKKGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT---RLAKNLLQDVIRNFFARCKATKQKAHKLA 834 (948)
T ss_pred c-chhhhhhhccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch---HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7 577766542211 133455665542 13457888888853 3332222110 1111111 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCC--chHHHHHHHHHH--cCCeEEEeccccCceE--EEecCcchHH
Q 017756 253 SQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLI--PGMEAVKKVAVE--AGAYGCTISGAGPTAV--AVVDNEEKGK 326 (366)
Q Consensus 253 ~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~~~--p~l~~l~~~~~~--~Ga~ga~mSGsG~~~~--~l~~~~~~a~ 326 (366)
+.+++..+.+++|.+..+++.+..-|...+....-+ +.+.++.+.+.. .|- .....|+|+|+| .+.+++...+
T Consensus 835 ~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hge-sgw~AGAGGGGFiYLl~kEpqqke 913 (948)
T KOG4644|consen 835 EATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGE-SGWAAGAGGGGFIYLLIKEPQQKE 913 (948)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccc-cchhccCCCCcEEEEEecCCCCHH
Confidence 245667788999999999998864333333333323 467888887754 343 334788888865 4556555555
Q ss_pred HHHHHHHHHHHHcCCCceEEEEeeeCCCceEE
Q 017756 327 VIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 327 ~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i 358 (366)
.+...|.+. +..| ..+++.+.++.+|..+
T Consensus 914 aiEa~Lak~-eg~g--N~s~Hlieid~egl~i 942 (948)
T KOG4644|consen 914 AIEAFLAKN-EGFG--NMSCHLIEIDLEGLFI 942 (948)
T ss_pred HHHHhhccC-CCcC--ceeEEEEEecCCcchH
Confidence 555544432 2233 4678888888888754
No 58
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.18 E-value=1.2e-08 Score=91.86 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=131.5
Q ss_pred HHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhh
Q 017756 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIM 194 (366)
Q Consensus 115 ~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~ 194 (366)
.+.+.+.++.. ++.++++..+|.|.|+|-|++.+.+.+.|++..++++ .++.++.|+.+|..--++.-| +++-.+
T Consensus 63 ~~~v~e~L~~~--~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtGLGD-VvAq~~ 137 (283)
T COG1829 63 TRKVIEKLGPD--GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGTGLGD-VVAQYT 137 (283)
T ss_pred HHHHHHHhCcc--CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCCCchH-HHHHhc
Confidence 35566777753 6889999999999999999999999999999999876 788999999999755444556 444689
Q ss_pred cCeEEEeecCC---CceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHH-HHHHcCCHHHH
Q 017756 195 GGFVLIRSYEP---LDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALV-AAVLNGDPVGL 270 (366)
Q Consensus 195 GG~~~~~~~~~---~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~-~al~~~d~~~l 270 (366)
||+++...-.+ ..+..++.+ .++++.+..+ +++|+++..... .+.+.+ ...+.+ +-|++-+++.|
T Consensus 138 GGlViR~~pG~Pg~~~vd~Ip~~---~~~V~~~~~g-~l~T~~vi~~~~-----~~~i~~--~g~~~l~ellk~Ptle~f 206 (283)
T COG1829 138 GGLVIRVKPGGPGEGEVDRIPVP---GLRVITISLG-ELSTKSVITDEV-----VRKINE--AGKRALAELLKNPTLENF 206 (283)
T ss_pred CcEEEEecCCCCCeEEEEEeecC---CceEEEEEcc-cccHHHhhhhHH-----HHHHHH--HHHHHHHHHHhCCCHHHH
Confidence 99766543311 257788765 3666665554 689987664421 122222 122333 33455566665
Q ss_pred HHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHH
Q 017756 271 GKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIG 329 (366)
Q Consensus 271 g~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~ 329 (366)
-+. ++.+.....-+..++.+.++.+...|.+++.|.--|-++|++.+..+..+.+.
T Consensus 207 ~~~---a~~FA~~~Gl~~~~v~~~~~~~~~~g~l~as~~mlg~tVFa~~~~~e~~~~~~ 262 (283)
T COG1829 207 MEE---AREFARRTGLMSEEVKEAAEALHSVGGLGASMAMLGVTVFALSPEAERLAEVG 262 (283)
T ss_pred HHH---HHHHHHHhCcCHHHHHHHHHHhhhcCchhHhHHhhCcEEEEeccccchHHHHH
Confidence 433 32244443333366777777777678888999999999999994333444433
No 59
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.98 E-value=2.3e-07 Score=83.32 Aligned_cols=205 Identities=18% Similarity=0.114 Sum_probs=113.7
Q ss_pred CCCCChHHHHHHHHHH-HHHHH-hCCCCCH-HHHHHHHHHhhhhccCC---CcchhhHhhhcCeEEEeecCCC-----ce
Q 017756 140 GSGLGSSAASAAAAAV-AVNEM-FGNKLLP-DELVIAGLESEAKVSGY---HADNIAPAIMGGFVLIRSYEPL-----DL 208 (366)
Q Consensus 140 gaGLGSSSA~aaA~l~-al~~l-~~~~ls~-~eL~~la~~~e~~v~g~---~~D~~a~~~~GG~~~~~~~~~~-----~~ 208 (366)
..||||||+.++.+.. ++..+ .+.++++ .++.++|+.+-...+|+ +.| ++++++|+.++.++.++. .+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfD-iaaA~fGsiiyrRF~p~li~~l~qi 185 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFD-IAAAIFGSIIYRRFEPGLIPKLRQI 185 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccch-hhHhhhcceEEeecCcchhhhhHhh
Confidence 6899999999999883 33333 4556666 78888888888877764 788 555899999986654221 12
Q ss_pred EEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCC----C-hhHHHH-HHHHHHHHHHH-HH-cCC-HHHHHHHHhcCcc
Q 017756 209 MRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEV----G-MPHHIW-NCSQAGALVAA-VL-NGD-PVGLGKALSSDKI 279 (366)
Q Consensus 209 ~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~----~-~~~~i~-~~~~~~~~~~a-l~-~~d-~~~lg~~l~~~~~ 279 (366)
..+.+ .++.+++.+...+.+|..+.+++.+.. + ...... +..++..++.. |. ..+ ...+.+.++.-
T Consensus 186 g~~nf---g~y~LmmGd~a~gSeTvglV~kv~~w~ns~~peelkc~de~nsrvl~l~~~sLdE~~s~~~~irrslrri-- 260 (337)
T COG3890 186 GAVNF---GDYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVLNLIKLSLDESNSKSKAIRRSLRRI-- 260 (337)
T ss_pred Ccccc---cCeeeeecccccCccchHHHHHHHHHhhcCChHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--
Confidence 33333 478888888877778886655443221 1 001111 11222222211 11 000 11122222110
Q ss_pred cccccCCC-CchHHHH-HHHHHHcCCeEEEeccccCc--eEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCc
Q 017756 280 VEPKRAPL-IPGMEAV-KKVAVEAGAYGCTISGAGPT--AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVG 355 (366)
Q Consensus 280 ~~~~~~~~-~p~l~~l-~~~~~~~Ga~ga~mSGsG~~--~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~G 355 (366)
-+...... -+....+ .......|++++.+-|+|++ .|+|..+. . .+++.|...+ ..+..++. .+|
T Consensus 261 tee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~--~-----e~re~w~~~g---i~i~dv~a-deG 329 (337)
T COG3890 261 TEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPN--I-----EAREAWLSKG---ISIVDVNA-DEG 329 (337)
T ss_pred HHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEeccc--H-----HHHHHHHhCC---eEEEEccc-ccc
Confidence 11111111 1223333 33344469999999999996 68887642 2 1233566655 45565663 599
Q ss_pred eEEEcc
Q 017756 356 ARLVGS 361 (366)
Q Consensus 356 a~i~~~ 361 (366)
++++.+
T Consensus 330 lr~Esd 335 (337)
T COG3890 330 LRFESD 335 (337)
T ss_pred cccccC
Confidence 998764
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=97.94 E-value=0.00031 Score=65.07 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHHHHHHH-cCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEcccc
Q 017756 292 EAVKKVAVE-AGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSVR 363 (366)
Q Consensus 292 ~~l~~~~~~-~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~~~ 363 (366)
..+++..+. .|.+++.+-|+|+ ..|++... +. ++.+.+.+.|..++ ..+..+.....|++++.+.+
T Consensus 386 T~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~--dv-d~~~~~~~~w~~~~---V~~ldV~~a~~Gv~~E~dp~ 454 (459)
T KOG4519|consen 386 TQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLG--DV-DSGTKLTQAWSSHN---VLALDVREAPHGVCLESDPR 454 (459)
T ss_pred hhHhhhhhcccceEEecccCCCCcceEEEEeec--ch-hHHHHHHhhhcccC---eeEEeeeeCCCcceeccCCc
Confidence 345555555 4999999999998 56888763 22 23456777777765 45667777789999998543
No 61
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=97.16 E-value=0.00027 Score=48.19 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=18.6
Q ss_pred eEEEeeeeecccccChhccccccc
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVD 72 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~ 72 (366)
+.++||||++++|||.|+.|..+.
T Consensus 14 ~~~~APGRvnliGeHtDy~gG~Vl 37 (52)
T PF10509_consen 14 VVASAPGRVNLIGEHTDYNGGFVL 37 (52)
T ss_dssp EEEEEEEEEEEE-TT-GGGT-EEE
T ss_pred EEEECCceEEecCcccccCCCeEE
Confidence 688999999999999999888664
No 62
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.021 Score=51.56 Aligned_cols=136 Identities=37% Similarity=0.483 Sum_probs=83.2
Q ss_pred CCCCCCCC----eeeeecCCCccccccCCCCcceeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEE
Q 017756 19 FNPAPKKP----IFKCSCSLPTVTTTEPEPVFTSVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSIS 94 (366)
Q Consensus 19 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~ 94 (366)
-||.|--+ -+||--++-+.+..+|.++......++|.+.+|.|+|+|.++.++|+.+ ++.+.....-.++|++.
T Consensus 14 aNigPg~dvlg~~l~~~~sldv~v~~~~~~~t~s~p~~c~ltya~eg~G~~~v~l~vd~n~--iT~t~lyvlRcnnis~f 91 (355)
T KOG1537|consen 14 ANIGPGLDVLGSVLRCRASLDVLVAVEPEPVTVSVPTFCPLTYANEGPGFDFVGLAVDGNH--ITLTVLYVLRCNNISIF 91 (355)
T ss_pred CCCCCCeeeeeeeeEEEEEEEEEEecccccccccCCCccceeeeccCCCccceeeeeccce--EEEeeeeeEEeCcEeec
Confidence 35555433 4678888888999999998888888899999999999999999998543 33322110001233322
Q ss_pred eecC----CCCCCCCCCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCC
Q 017756 95 EVIG----PSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGN 163 (366)
Q Consensus 95 ~~~g----~~~~~~~~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~ 163 (366)
...- .+++|.. +.+-. ....+..|+...+ -..+-.+|.+++|+++.+....--.+.++++|.
T Consensus 92 p~~Tk~hvtNPiplg--rGigs---sgta~~aGv~l~n--e~a~LGlsk~~mldy~lmierhpdn~~a~mmGg 157 (355)
T KOG1537|consen 92 PITTKKHVTNPIPLG--RGIGS---SGTAKMAGVRLVN--ESADLGLSKGSMLDYSLMIERHPDNAVAEMMGG 157 (355)
T ss_pred ccceeeeecCCcccc--ccccc---hhhhhhhhheecc--hHhhcCCccccchhHHHHHhhChHHHHHHHHhh
Confidence 1100 0123321 11111 1112223432111 122227899999999999999888888888875
No 63
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=60.16 E-value=28 Score=27.57 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCeEEEeccccC------ceEEEecCcchHHHHHHHHHHHHHHc
Q 017756 291 MEAVKKVAVEAGAYGCTISGAGP------TAVAVVDNEEKGKVIGEKMVEAFWKE 339 (366)
Q Consensus 291 l~~l~~~~~~~Ga~ga~mSGsG~------~~~~l~~~~~~a~~v~~~l~~~~~~~ 339 (366)
-+.+.+.+.+.|....++|.+|+ +.+.+.-++++.+++.+.+++.++++
T Consensus 13 a~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 13 ADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred HHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 46677888889988899999888 34555555688999999999988764
No 64
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=54.58 E-value=69 Score=27.96 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=40.5
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
...+..|++..++-+++...+|- --.+++++.++++++|++++.++|.+.|.+++..+
T Consensus 104 ~~a~~~gi~ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~~~ 161 (188)
T TIGR00162 104 GVSELEGIPGACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEKII 161 (188)
T ss_pred HHHHHCCCCeEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 34455576532333344333443 56678889999999999999999999988888644
No 65
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.12 E-value=33 Score=29.06 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 141 SGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 141 aGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
.+.|||...+.+..+|+.+.- .++.+|+++-+..+..++
T Consensus 124 ~aIGSGgnyAl~AarAl~~~~--~lsA~eIa~~sl~iA~ei 162 (178)
T COG5405 124 IAIGSGGNYALSAARALMENT--ELSAREIAEKSLKIAGDI 162 (178)
T ss_pred EEEcCCchHHHHHHHHHHhcc--CCCHHHHHHHHHhhhheE
Confidence 678999999999999998877 689999999887776543
No 66
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=38.12 E-value=1.4e+02 Score=20.85 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 289 PGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 289 p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
..+..+.+.+++.|....++|....=.+--++ .++++++.+.|++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~-~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVP-EENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEE-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCC-HHHHHHHHHHHHc
Confidence 46788888899988778999988874333343 5788888887765
No 67
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=37.24 E-value=2e+02 Score=22.48 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=35.6
Q ss_pred CccHHHHHHHHHHHH---hCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHh
Q 017756 107 LWNCAGIAAISAMKM---LGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMF 161 (366)
Q Consensus 107 ~~n~i~~a~~~~~~~---~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~ 161 (366)
+.+.|.+++...++. .|.+..+++|++.. ...+.+-++.+++..|...|+.+.+
T Consensus 56 ~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~-~~~~~~~s~~~~~~~aa~~a~~~al 112 (116)
T cd01434 56 YIPAVEKGFREALEKGPLAGYPVVDVKVTLYD-GSYHDVDSSEMAFKIAARMAFKEAF 112 (116)
T ss_pred HHHHHHHHHHHHHhcCcccCCccccEEEEEEe-ceeecCCCCHHHHHHHHHHHHHHHH
Confidence 344555555555443 25555688898884 4566666778888888888887765
No 68
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=31.89 E-value=72 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 146 SAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 146 SSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
.--.+++++.+++++++++++.++|.+.|.++|..+
T Consensus 182 DP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~ 217 (238)
T TIGR00161 182 DPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRL 217 (238)
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999998888643
No 69
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=29.85 E-value=1.1e+02 Score=21.94 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 290 GMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 290 ~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
-+..+++.+.-.+.+ +-++|- -|++.++++++.++++.+.+++
T Consensus 27 ~va~~iD~~~~~~I~-GtIAgd-DTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 27 AVAAAIDQLNLPEIF-GTIAGD-DTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp HHHHHHHHHCGTTEE-EEEEES-SEEEEEESTTSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccE-EEEeCC-CEEEEEeCCHHHHHHHHHHHHh
Confidence 345555555444543 446664 5799999988899988887764
No 70
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=2.3e+02 Score=22.05 Aligned_cols=48 Identities=6% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEeccccC------ceEEEecCcchHHHHHHHHHHHHHHc
Q 017756 292 EAVKKVAVEAGAYGCTISGAGP------TAVAVVDNEEKGKVIGEKMVEAFWKE 339 (366)
Q Consensus 292 ~~l~~~~~~~Ga~ga~mSGsG~------~~~~l~~~~~~a~~v~~~l~~~~~~~ 339 (366)
+++.+.+.+.|-...++..+|+ +-|.+--++++.+.+...+++.++.+
T Consensus 14 ~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfliGved~~vd~~~s~Ike~C~~r 67 (109)
T COG3870 14 NELEDALTDKNFRATKLASTGGFLKAGNTTFLIGVEDDRVDALRSLIKENCKSR 67 (109)
T ss_pred HHHHHHHHhCCceeEEeeccCceeecCCeEEEEecccchhHHHHHHHHHHhhhH
Confidence 4555666666655566666655 45666666678999999888877643
No 71
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.92 E-value=94 Score=28.35 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 149 SAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 149 ~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
.|+.++.++|+++|++++-++|.+.|..++..+
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i~~~l 220 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQL 220 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHH
Confidence 466778899999999999999999888877643
No 72
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=24.51 E-value=3.3e+02 Score=21.00 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHH---hCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHh
Q 017756 109 NCAGIAAISAMKM---LGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMF 161 (366)
Q Consensus 109 n~i~~a~~~~~~~---~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~ 161 (366)
+.+.+++...++. .|.+..++++++. +.+.+.+-.+.+++..|+-.|+.+.+
T Consensus 58 ~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~-~~~~~~~~~~~~~~~~aa~~a~~~al 112 (116)
T cd01680 58 EAVEEGIRDACASGPLTGYPLTDVRVTVL-DVPYHEGVSTEAGFRAAAGRAFESAA 112 (116)
T ss_pred HHHHHHHHHHHhcCcccCCceeeEEEEEE-EEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444444432 2444567888888 44555554455666667666766654
No 73
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=22.95 E-value=40 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.9
Q ss_pred CCCCCCeeeeecCC
Q 017756 21 PAPKKPIFKCSCSL 34 (366)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (366)
-.|-|.+||+||+-
T Consensus 23 ~kpGsYiFRlSCTr 36 (86)
T PF02762_consen 23 DKPGSYIFRLSCTR 36 (86)
T ss_dssp TSTTEEEEEEESSS
T ss_pred CCcccEEEeecccc
Confidence 35788899999973
No 74
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=22.80 E-value=1.1e+02 Score=21.73 Aligned_cols=30 Identities=20% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017756 146 SAASAAAAAVAVNEMFGNKLLPDELVIAGL 175 (366)
Q Consensus 146 SSA~aaA~l~al~~l~~~~ls~~eL~~la~ 175 (366)
-.+.++|.++...+..+.+.+..|+.+.+.
T Consensus 36 ~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 36 PESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 467788888888999999999998887543
No 75
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=20.63 E-value=1.1e+02 Score=20.93 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017756 142 GLGSSAASAAAAAVAVNEMFGNKLLPDELVI 172 (366)
Q Consensus 142 GLGSSSA~aaA~l~al~~l~~~~ls~~eL~~ 172 (366)
.+|..|-.++.+...+.+.||..++..++.+
T Consensus 26 ~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~ 56 (67)
T PF00550_consen 26 DLGLDSLDAIELVSELEEEFGIKIPPSDLFE 56 (67)
T ss_dssp TTTSSHHHHHHHHHHHHHHHTSSTTHHHHCT
T ss_pred HhCCchHHHHHHHHHHHHHHcCCCCHHHHHc
Confidence 4888999999999999999999999887654
Done!