Query 017756
Match_columns 366
No_of_seqs 255 out of 1619
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hul_A HSK, HK, homoserine kin 100.0 4.2E-46 1.4E-50 349.5 31.1 287 49-361 3-291 (298)
2 1h72_C HK, homoserine kinase; 100.0 5.7E-45 2E-49 341.7 33.6 294 48-359 2-296 (296)
3 3pyf_A 4-diphosphocytidyl-2-C- 100.0 3E-45 1E-49 344.8 22.0 285 47-361 4-302 (306)
4 3k85_A D-glycero-D-manno-hepto 100.0 4.8E-39 1.6E-43 309.0 21.8 302 48-362 3-342 (357)
5 4hac_A Mevalonate kinase; GHMP 100.0 9.5E-38 3.2E-42 295.9 29.2 285 49-359 22-321 (321)
6 2cz9_A Probable galactokinase; 100.0 2.6E-37 8.8E-42 296.3 31.5 298 49-358 2-350 (350)
7 2hfs_A Mevalonate kinase, puta 100.0 4.7E-37 1.6E-41 292.5 28.3 283 48-339 13-316 (332)
8 1wuu_A Galactokinase; galactos 100.0 1.9E-36 6.4E-41 295.5 28.4 296 48-359 36-397 (399)
9 1pie_A Galactokinase; galactos 100.0 3.4E-36 1.2E-40 295.4 29.6 302 49-360 49-417 (419)
10 2v8p_A 4-diphosphocytidyl-2-C- 100.0 3.3E-37 1.1E-41 285.6 18.1 243 49-330 5-260 (271)
11 2x7i_A Mevalonate kinase; tran 100.0 3.7E-36 1.3E-40 283.4 22.8 286 45-351 3-306 (308)
12 2pg9_A Phosphomevalonate kinas 100.0 2.1E-35 7.1E-40 281.6 26.6 286 48-351 3-331 (337)
13 3qt5_A Mevalonate diphosphate 100.0 9.4E-36 3.2E-40 283.0 23.7 295 46-360 7-332 (332)
14 2a2c_A N-acetylgalactosamine k 100.0 7.6E-35 2.6E-39 289.9 31.1 300 48-359 55-475 (478)
15 1uek_A 4-(cytidine 5'-diphosph 100.0 1.2E-35 4.1E-40 275.6 22.0 255 49-356 2-270 (275)
16 1kkh_A Mevalonate kinase; mixe 100.0 1.1E-34 3.6E-39 274.5 27.5 289 45-353 2-317 (317)
17 3k17_A LIN0012 protein; protei 100.0 8.3E-35 2.8E-39 280.1 26.5 297 45-356 3-356 (365)
18 1kvk_A MK, mevalonate kinase; 100.0 1.1E-34 3.7E-39 282.7 24.7 298 48-360 5-381 (395)
19 2oi2_A Mevalonate kinase; enzy 100.0 2E-34 6.9E-39 269.3 23.5 266 49-335 6-282 (292)
20 2ww4_A 4-diphosphocytidyl-2C-m 100.0 1E-34 3.5E-39 270.3 17.6 245 48-334 2-263 (283)
21 3gon_A Phosphomevalonate kinas 100.0 2.2E-32 7.7E-37 260.0 27.4 281 49-340 2-320 (335)
22 2gs8_A Mevalonate pyrophosphat 100.0 1.6E-30 5.4E-35 246.0 25.0 282 48-358 8-317 (317)
23 3v2u_C Protein GAL3; rossmann 100.0 2E-30 6.8E-35 257.8 26.7 304 48-360 39-519 (520)
24 2hke_A Diphosphomevalonate dec 100.0 8.5E-29 2.9E-33 239.5 27.0 271 46-337 1-319 (380)
25 1fi4_A Mevalonate 5-diphosphat 100.0 1.1E-28 3.9E-33 241.0 27.6 277 46-337 23-348 (416)
26 3lto_A Mevalonate diphosphate 99.9 4.1E-26 1.4E-30 214.2 25.3 212 113-338 78-310 (323)
27 3f0n_A Mevalonate pyrophosphat 99.9 5.4E-24 1.8E-28 204.0 21.7 269 48-338 23-346 (414)
28 1qys_A TOP7; alpha-beta, novel 39.2 98 0.0033 21.7 7.4 60 291-360 33-92 (106)
29 4hhu_A OR280; engineered prote 39.0 35 0.0012 26.1 4.1 35 305-339 74-108 (170)
30 3gaa_A Uncharacterized protein 25.1 1.2E+02 0.0041 26.4 5.9 57 118-181 174-230 (252)
31 1vfj_A Nitrogen regulatory pro 23.8 2.3E+02 0.0078 21.1 6.7 62 290-352 12-97 (116)
32 4i4d_A Peptide synthetase NRPS 23.1 92 0.0031 22.1 4.1 31 142-172 42-72 (93)
33 2p90_A Hypothetical protein CG 22.4 2.5E+02 0.0085 25.4 7.7 64 114-181 182-245 (319)
34 2eg2_A Nitrogen regulatory pro 21.5 2.5E+02 0.0086 20.7 6.7 60 290-352 12-97 (112)
35 1dny_A Non-ribosomal peptide s 20.6 81 0.0028 22.4 3.3 32 141-172 39-70 (91)
36 2cz4_A Hypothetical protein TT 20.0 2.7E+02 0.0091 21.1 6.3 61 289-351 35-110 (119)
No 1
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=100.00 E-value=4.2e-46 Score=349.50 Aligned_cols=287 Identities=25% Similarity=0.335 Sum_probs=229.8
Q ss_pred eEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCcc
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVG 128 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~g 128 (366)
+++++||+.+|||+++|.+|.+++ +||+++++... +.+++... +...+|.+ ++|+++|+++.+++ . ..|
T Consensus 3 ~~v~vPat~anlG~Gfd~lg~al~-l~d~v~~~~~~----~~~~i~~~-~~~~~p~~-~~nlv~~a~~~~~~---~-~~g 71 (298)
T 3hul_A 3 LRIRVPATTANLGPGFDSCGLALT-LYLTLDIGAEA----DSWYIEHN-IGGGIPHD-ETNVIIETALNLAP---N-LTP 71 (298)
T ss_dssp EEEEEEEEEESCTTCTTTEEEEEE-EEEEEEEEEEC----SSCEEECC-CCTTCCSS-TTSHHHHHHHHHCT---T-CCC
T ss_pred EEEEEeeceeccCCCcchhhhhcc-cceEEEEEEcC----CceEEEec-CcccCCCC-CCcHHHHHHHHHhc---c-CCc
Confidence 899999999999999999999997 99999997422 46676532 11246655 57999999887766 2 358
Q ss_pred eEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcCeEEEeecCCCce
Q 017756 129 LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDL 208 (366)
Q Consensus 129 ~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG~~~~~~~~~~~~ 208 (366)
++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|.++|. ++|++++|++||+++..+. ++.+
T Consensus 72 ~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg-----~~ddv~~~~~GG~~~~~g~-ge~~ 145 (298)
T 3hul_A 72 HHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEG-----HPDNVAPAVLGNWVVGAKL-DGED 145 (298)
T ss_dssp EEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHS-----CSTTHHHHHHCSEEEEEEE-TTEE
T ss_pred eEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC-----CcccCcccccCCEEEEEeC-CCcE
Confidence 999999999999999999999999999999999999999999999999994 6788988899999997765 4555
Q ss_pred E--EeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC
Q 017756 209 M--RLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286 (366)
Q Consensus 209 ~--~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~ 286 (366)
. ++++ +++++++++|+++++|+++|+.+++..++.+.+.+..++..++.+|.++|++.++++|+||.+||+++..
T Consensus 146 ~~~~~~~---p~~~~vlv~p~~~~sT~~a~~~l~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~ 222 (298)
T 3hul_A 146 FYVRHLF---PDCALIAFIPKAELLTSESRGVLPDTLPFKEAVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQ 222 (298)
T ss_dssp EEEEECC---C-CEEEEEECCCCCC--------CCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CT
T ss_pred EEEEcCC---CCeEEEEEECCCCCCcHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHh
Confidence 4 6654 3689999999999999999999887655555555555677889999999999999999888778999888
Q ss_pred CCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEcc
Q 017756 287 LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVGS 361 (366)
Q Consensus 287 ~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~ 361 (366)
.+|+++++++.+++.|+++++||||||++|+|++ ++.++++.+.+++ .+ ..++++++++++.|++|+.+
T Consensus 223 ~~p~l~~l~~~~~~~Ga~ga~~SGsGptv~al~~-~~~a~~v~~~l~~----~~-~~~~~~~~~~~~~Ga~v~~~ 291 (298)
T 3hul_A 223 LVPHLAQIRDVAKNQGAYAACLSGAGPTVLVFAP-RNLANKLQTSLQT----LE-IDADVLLLDVEGSGAEVFRE 291 (298)
T ss_dssp TGGGHHHHHHHHHTTTCCEEEECTTSSCEEEEEC-GGGHHHHHHHHHT----TC-CSSEEEEEEBCCCCCEEEEC
T ss_pred hCchHHHHHHHHHHCCCEEEEEeccchheEEEEC-HHHHHHHHHHHHh----cC-CCcEEEEcccCCCceEEEec
Confidence 8999999999999999999999999999999998 6777777666554 33 35889999999999999865
No 2
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=100.00 E-value=5.7e-45 Score=341.73 Aligned_cols=294 Identities=34% Similarity=0.508 Sum_probs=244.7
Q ss_pred eeEEEeeeeecccccChhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhCCCCc
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSV 127 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g~~~~ 127 (366)
+++++||||++|||+|+|++|.++|.+++.++++..+. +.+++.. ++. .+|.+.|.|++.++++.+++++|.+ .
T Consensus 2 ~i~v~aPaki~nlG~g~~vl~~a~d~~~~~~~~~~~~~---~~~~i~~-~~~-~~~~~~~~n~v~~a~~~~~~~~g~~-~ 75 (296)
T 1h72_C 2 KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVEAIDD---KEIIIEV-DDK-NIPTDPDKNVAGIVAKKMIDDFNIG-K 75 (296)
T ss_dssp EEEEEEEEEEECTGGGTTTEEEEEEEEEEEEEEEEESS---SSEEEEE-SCT-TSCCCTTTSHHHHHHHHHHHHTTCC-C
T ss_pred eEEEEEEeehhccccchhhhHHhcccccEEEEEEecCC---CeEEEEE-cCC-cCCCCCccCcHHHHHHHHHHHhCCC-C
Confidence 47899999999999999999999986677777765442 4577653 232 3554447899999999999998885 6
Q ss_pred ceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC-CcchhhHhhhcCeEEEeecCCC
Q 017756 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPL 206 (366)
Q Consensus 128 g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~-~~D~~a~~~~GG~~~~~~~~~~ 206 (366)
|++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|.++|..++|. ++|++++|++||++++.+.+..
T Consensus 76 g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~~~~~ 155 (296)
T 1h72_C 76 GVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPL 155 (296)
T ss_dssp EEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEETTTT
T ss_pred CeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEeCCce
Confidence 999999999999999999999999999999999999999999999999999988874 7888988899999998765333
Q ss_pred ceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC
Q 017756 207 DLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP 286 (366)
Q Consensus 207 ~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~ 286 (366)
.+++++++ +++++++++|+.+++|+++++.+++..+..+.+.+..++..++.+|.++|++.|+++|+++.+|++++..
T Consensus 156 ~~~~~~~~--~~~~~vl~~p~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~~ 233 (296)
T 1h72_C 156 EVLHIPID--FKLDILIAIPNISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGK 233 (296)
T ss_dssp EEEEECCC--SCCCEEEECCSSCCCHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHHT
T ss_pred EEEEEcCC--CCeEEEEEeCCCCccHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhhc
Confidence 47888876 6899999999999999999999876654445555555677888999999999999999334447888878
Q ss_pred CCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 287 LIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 287 ~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
++|+++++++.+++. ++|++|||||+++|+|+ +++.++++.+.+++.+.+ + +++++ ++|+++.
T Consensus 234 ~~p~l~~~~~~~~~~-a~ga~~sGsG~~v~~l~-~~~~~~~~~~~l~~~~~~-----~--~~~~~-~~Ga~v~ 296 (296)
T 1h72_C 234 LIPNYFKIKEEVKDK-VYGITISGSGPSIIAFP-KEEFIDEVENILRDYYEN-----T--IRTEV-GKGVEVV 296 (296)
T ss_dssp TSTTHHHHHHHHTTT-EEEEEECTTSSCEEEEE-CGGGHHHHHHHHHHHCSC-----E--EEECB-CCCCEEC
T ss_pred cCccHHHHHHHHHhh-cceEEEecCChheEEEe-cHHHHHHHHHHHHHhccC-----c--eeccC-CCCeEeC
Confidence 899999999999988 89999999999999999 567788888887764321 2 37788 8999873
No 3
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=100.00 E-value=3e-45 Score=344.75 Aligned_cols=285 Identities=23% Similarity=0.277 Sum_probs=230.8
Q ss_pred ceeEEEeeeeecccccChhccccccc------------ccCCEEEEEEcCCCCCCcEEEEeecCC--CCCCCCCCccHHH
Q 017756 47 TSVKTFAPATVANLGPCFDFLGCAVD------------GLGDYVSLKVDPSVHPGEVSISEVIGP--SKLSKNPLWNCAG 112 (366)
Q Consensus 47 ~~~~~~aPaki~nlGe~~dv~g~~~~------------~l~~~v~v~~~~~~~~~~i~i~~~~g~--~~~~~~~~~n~i~ 112 (366)
..++++||||| ||+ ++|.+++.| ++||+++++.... ..+++. +. ..+|.+ ++|+++
T Consensus 4 ~~~~~~apAKi-NL~--L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~---~~i~~~---g~~~~~~p~~-~~Nlv~ 73 (306)
T 3pyf_A 4 GSVTVRVPGKV-NLY--LAVGDRREDGYHELTTVFHAVSLVDEVTVRNADV---LSLELV---GEGADQLPTD-ERNLAW 73 (306)
T ss_dssp -CEEEEEEEEE-EEE--EEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSS---CEEEEE---STTGGGSCCS-TTSHHH
T ss_pred ccEEEEecceE-Eee--cccCCcCCCCCcchheeEEEcccCCEEEEEECCC---CEEEEe---CCCccCCCCC-CccHHH
Confidence 35899999999 996 677776666 3677888775432 345443 32 246765 589999
Q ss_pred HHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHh
Q 017756 113 IAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPA 192 (366)
Q Consensus 113 ~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~ 192 (366)
+|++.+++++|.+ .|++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|.++|.|+ ++|
T Consensus 74 ~A~~~l~~~~g~~-~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv--------~~~ 144 (306)
T 3pyf_A 74 QAAELMAEHVGRA-PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDV--------PFA 144 (306)
T ss_dssp HHHHHHHHHTTCC-CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTH--------HHH
T ss_pred HHHHHHHHHhCCC-CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCC--------cee
Confidence 9999999999985 6999999999999999999999999999999999999999999999999999654 468
Q ss_pred hhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 017756 193 IMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGK 272 (366)
Q Consensus 193 ~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~ 272 (366)
++||+++..+. ++.+++++.+ +++++++++|+++++|+++|+.++......+ +.....+..++.+|.++|++.+++
T Consensus 145 ~~Gg~~~~~g~-ge~~~~l~~~--~~~~~vl~~P~~~vsT~~a~~~l~~~~~~~~-~~~~~~~~~~~~al~~~d~~~l~~ 220 (306)
T 3pyf_A 145 LHGGTALGTGR-GEELATVLSR--NTFHWVLAFADSGLLTSAVYNELDRLREVGD-PPRLGEPGPVLAALAAGDPDQLAP 220 (306)
T ss_dssp HHBSEEEECSS-SSCCEEECCS--SCEEEEEEECSSCCCHHHHHHHHHHHHHHSC-CCCCCCHHHHHHHHHHTCHHHHGG
T ss_pred ecCceEEEEee-CCeEEEccCC--CCcEEEEEECCCCCcHHHHHHhhhhhccccc-cccccCHHHHHHHHHhCCHHHHHH
Confidence 99999998776 6788998766 6899999999999999999988753210000 001113567889999999999999
Q ss_pred HHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeC
Q 017756 273 ALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLD 352 (366)
Q Consensus 273 ~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~ 352 (366)
.|.|+ +|+++...+|+++++++.+++.||++++||||||++|+|+++++.++++.+.|++ .+ ...++++++++
T Consensus 221 ~l~n~--le~~~~~~~P~l~~i~~~~~~~Ga~ga~mSGsGptvfal~~~~~~a~~~~~~l~~----~g-~~~~v~~~~~~ 293 (306)
T 3pyf_A 221 LLGNE--MQAAAVSLDPALARALRAGVEAGALAGIVSGSGPTCAFLCTSASSAIDVGAQLSG----AG-VCRTVRVATGP 293 (306)
T ss_dssp GCEET--THHHHHHHCTHHHHHHHHHHHTTCSEEEECTTSSEEEEEESSHHHHHHHHHHHHH----TT-SSSEEEEEEEC
T ss_pred Hhccc--hHHHHHHhChHHHHHHHHHHhcCCCEEEEcCcchhheEEeCCHHHHHHHHHHHHh----cC-CcceEEEeecC
Confidence 99888 7888777799999999999999999999999999999999876667777666654 44 35789999999
Q ss_pred CCceEEEcc
Q 017756 353 RVGARLVGS 361 (366)
Q Consensus 353 ~~Ga~i~~~ 361 (366)
+.|++|+..
T Consensus 294 ~~Ga~v~~~ 302 (306)
T 3pyf_A 294 VPGARVVSA 302 (306)
T ss_dssp CBCSEEC--
T ss_pred CCCCEEecC
Confidence 999999754
No 4
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-39 Score=308.99 Aligned_cols=302 Identities=20% Similarity=0.156 Sum_probs=206.7
Q ss_pred eeEEEeeeeecccccChhc------ccc-----cccccCCEEEEEEcCCCCCCcEEEEeecCC--------CCCCCCCCc
Q 017756 48 SVKTFAPATVANLGPCFDF------LGC-----AVDGLGDYVSLKVDPSVHPGEVSISEVIGP--------SKLSKNPLW 108 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv------~g~-----~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~--------~~~~~~~~~ 108 (366)
.++++|||||+++|||+|+ .|. +++ ++++++++.+.+ +.+++.+.... ..++.+.|.
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId-~~~~v~i~~~~d---~~i~i~s~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATIN-LYAYCTIEETNS---GRIEINAYDAQCCKSYLSMSQLEIDGEA 78 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEE-EEEEEEEEECSS---SEEEEEETTTTEEEEEECCSSCCCCSSS
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEe-CcEEEEEEECCC---CeEEEEECCCCceEEEeccccccccchH
Confidence 5789999999999999998 444 443 777777766543 56777543211 012224589
Q ss_pred cHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC---CC
Q 017756 109 NCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG---YH 185 (366)
Q Consensus 109 n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g---~~ 185 (366)
|++..++..+.+..+....|++|.++++||.++|||||||+++|++.+++++++++++.++|+++|..+|..+.| ++
T Consensus 79 ~~v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~ 158 (357)
T 3k85_A 79 SLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGK 158 (357)
T ss_dssp HHHHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCS
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcH
Confidence 999888877776654323699999999999999999999999999999999999999999999999999998876 46
Q ss_pred cchhhHhhhcCeEEEeecC--CCceEEeeCCCcC----ceEEEEEcCCCCcchHHHHHhCCcCC-----ChhHHHHH-HH
Q 017756 186 ADNIAPAIMGGFVLIRSYE--PLDLMRLNFPEKK----QLLFVLVTPEFEAPTKKMRAALPAEV-----GMPHHIWN-CS 253 (366)
Q Consensus 186 ~D~~a~~~~GG~~~~~~~~--~~~~~~l~~~~~~----~~~~vl~~p~~~~sT~~~~~~l~~~~-----~~~~~i~~-~~ 253 (366)
+||++ +++||.......+ +..+++++++... ++.++|++++.+.+|.++++..-... ...+.+.. ..
T Consensus 159 ~D~~a-~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i~~ 237 (357)
T 3k85_A 159 QDQYA-AAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKIKQ 237 (357)
T ss_dssp HHHHH-HHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------CCTTHHHHHHHH
T ss_pred HHHHH-HHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 89997 6899998766532 3457788765110 25788999998888887665431110 11122322 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccc--cCCCCchHHHHHHHHHHcCCeEEEeccccCc--eEEEecCcchHHHHH
Q 017756 254 QAGALVAAVLNGDPVGLGKALSSDKIVEPK--RAPLIPGMEAVKKVAVEAGAYGCTISGAGPT--AVAVVDNEEKGKVIG 329 (366)
Q Consensus 254 ~~~~~~~al~~~d~~~lg~~l~~~~~~~~~--~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~--~~~l~~~~~~a~~v~ 329 (366)
++.+++.+|.++|++.|+++|++++..... ...++|+++++++.+++.|++|++|||||+| +++|++ ++.++++.
T Consensus 238 ~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~-~~~~~~~~ 316 (357)
T 3k85_A 238 SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVE-PTRKEEVV 316 (357)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEec-HHHHHHHH
Confidence 567789999999999999999876322221 2345799999999999999999999999999 567775 35566666
Q ss_pred HHHHHHHHHcCCCceEEEEeeeCCCceEEEccc
Q 017756 330 EKMVEAFWKEGNLKAVSMVKRLDRVGARLVGSV 362 (366)
Q Consensus 330 ~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~~~ 362 (366)
++|++ .+ .+++.++++++|++++...
T Consensus 317 ~~l~~----~g---~~~~~~~~~~~G~~v~~~~ 342 (357)
T 3k85_A 317 RALNN----LN---GFVMPFQFIDDGAHGWKIY 342 (357)
T ss_dssp HHHHT----SS---SCBCCCCBCCCCCEEEECC
T ss_pred HHHHH----CC---CeEEEeEEcCCceEEEEec
Confidence 55543 44 6788899999999998643
No 5
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=9.5e-38 Score=295.93 Aligned_cols=285 Identities=27% Similarity=0.337 Sum_probs=215.6
Q ss_pred eEEEeeeeecccccChhccc-----ccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhC
Q 017756 49 VKTFAPATVANLGPCFDFLG-----CAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLG 123 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g-----~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g 123 (366)
++++|||||+++|||.|+.| .+++ ++++++++.. +.+++.+......++.+ +.|++.+ +...++.++
T Consensus 22 i~~~APgkinL~GeH~~~~Gg~~l~~aI~-~~~~v~v~~~-----~~i~i~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~ 93 (321)
T 4hac_A 22 VSCSAPGKIYLFGEHAVVYGETAIACAVE-LRTRVRAELN-----DSITIQSQIGRTGLDFE-KHPYVSA-VIEKMRKSI 93 (321)
T ss_dssp EEEEEEEEEEEECTTTGGGTCCEEEEEEE-EEEEEEEEEC-----SSEEEEETTEEESSCTT-TSHHHHH-HHHHHTTTS
T ss_pred EEEEeeEEEEEEccCEEEcCCEEEEEEec-cCEEEEEEEC-----CCEEEEECCCCcccccc-hhHHHHH-HHHHHHHhC
Confidence 78999999999999998654 4664 7777777642 23777542110123433 4577644 444555566
Q ss_pred CCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEe
Q 017756 124 VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIR 201 (366)
Q Consensus 124 ~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~ 201 (366)
. ..|++|+++++||.++|||||||+++|++.|++++++++++.++|+++|.++|..++|. ++|+. ++++||++++
T Consensus 94 ~-~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~-~~~~Gg~~~~- 170 (321)
T 4hac_A 94 P-INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTY-VSTFGGVVTI- 170 (321)
T ss_dssp C-CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHCSEEEE-
T ss_pred C-CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHH-HHHcCCeEEE-
Confidence 4 46999999999999999999999999999999999999999999999999999988763 56755 5899999887
Q ss_pred ecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcC---CC--hhHHHHHHH-HHHHHHHHHHcCCHHHHHHHHh
Q 017756 202 SYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAE---VG--MPHHIWNCS-QAGALVAAVLNGDPVGLGKALS 275 (366)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~---~~--~~~~i~~~~-~~~~~~~al~~~d~~~lg~~l~ 275 (366)
+ +++.+ ++| ++++++++|+.+++|+++++.++.. .+ ..+.+.+.. .+.+++.+|.++|++.|+++|+
T Consensus 171 ~-~~~~l---~~p---~~~~vlv~p~~~~sT~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~ 243 (321)
T 4hac_A 171 P-ERRKL---KTP---DCGIVIGDTGVFSSTKELVANVRQLRESYPDLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMN 243 (321)
T ss_dssp T-TCCEE---CCC---CCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred c-CCcee---ccC---CCEEEEEECCCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3 24433 333 7899999999999999988764321 11 112222222 3456789999999999999998
Q ss_pred cCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCC
Q 017756 276 SDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDR 353 (366)
Q Consensus 276 ~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~ 353 (366)
+++.+......++|+++++++.+++.|++|++|||||+ ++|+|+ +++.++++.+.|++ .+ .+++.+++++
T Consensus 244 ~~~~~~~~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~-~~~~a~~~~~~l~~----~g---~~v~~~~~~~ 315 (321)
T 4hac_A 244 VNQGLLDALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALT-APEKCNQVAEAVAG----AG---GKVTITKPTE 315 (321)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEE-CSTTHHHHHHHHHH----TT---CEEEEECBCS
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEc-CHHHHHHHHHHHHh----CC---CeEEEEEECC
Confidence 65333333445789999999999999999999999999 578888 56778877777654 33 6899999999
Q ss_pred CceEEE
Q 017756 354 VGARLV 359 (366)
Q Consensus 354 ~Ga~i~ 359 (366)
+|++|+
T Consensus 316 ~G~~v~ 321 (321)
T 4hac_A 316 QGLKVD 321 (321)
T ss_dssp CSSEEC
T ss_pred CceecC
Confidence 999974
No 6
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=2.6e-37 Score=296.26 Aligned_cols=298 Identities=20% Similarity=0.270 Sum_probs=220.4
Q ss_pred eEEEeeeeecccccChhcc-----cccccccCCEEEEEEcCCCCCCcEEEEeecCCC--C-C--C-CCCCccHHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFL-----GCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPS--K-L--S-KNPLWNCAGIAAIS 117 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~-----g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~--~-~--~-~~~~~n~i~~a~~~ 117 (366)
++++|||||+++|||.|+. +.+++ ++++++++..+. +.+++.+..... . + + .+.|.|++ +++..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~-~~~~v~v~~~~~---~~i~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 76 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAIN-LYTKIEAEKHGE---VILYSEHFGEERKFSLNDLRKENSWIDYV-KGIFW 76 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEE-EEEEEEEEEESS---EEEEETTTTEEEEECTTCCCCCSSTHHHH-HHHHH
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEee-ceEEEEEEECCC---CeEEEEECCCCccccccCCCCCCcHHHHH-HHHHH
Confidence 5789999999999999984 44554 777777775442 345553210000 1 2 2 24467888 44544
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh---ccCCCcchhhHhhh
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAK---VSGYHADNIAPAIM 194 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~---v~g~~~D~~a~~~~ 194 (366)
.++..+....|++|+++++||.++|||||||+++|++.|++++++.++++++|+++|..+|.. ++++.+|+++ +.+
T Consensus 77 ~l~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~-~~~ 155 (350)
T 2cz9_A 77 VLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFA-VVF 155 (350)
T ss_dssp HHHHTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHH-HHH
T ss_pred HHHhcCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHH-HHh
Confidence 555566544689999999999999999999999999999999999999999999999999984 4545679887 677
Q ss_pred cC---eEEEeecCCCceEEeeCCCcCceEEEEEcCCCC--cchHHHHH-----------h----------------CCcC
Q 017756 195 GG---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFE--APTKKMRA-----------A----------------LPAE 242 (366)
Q Consensus 195 GG---~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~--~sT~~~~~-----------~----------------l~~~ 242 (366)
|| .++++. .+..+++++++ +++++++++|+.+ .+|.+ |+ . ++..
T Consensus 156 g~~~~~~~~d~-~~~~~~~l~~~--~~~~~vl~~~~~~~~~~t~~-~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~ 231 (350)
T 2cz9_A 156 GREGNVIFLDT-HTLDYEYIPFP--KDVSILVFYTGVRRELASSE-YAERKHIAEESLKILGKGSSKEVREGELSKLPPL 231 (350)
T ss_dssp CCTTEEEEEET-TTCCEEEEECC--TTEEEEEEECSCC----CHH-HHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHH
T ss_pred cCCCeEEEEec-CCCcEEEEcCC--CCcEEEEEECCCCCccccch-HHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHH
Confidence 74 344433 35678999876 6899999999987 66654 21 0 1110
Q ss_pred C--ChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCchHHHHHHHHHHcCCeEEEecccc--CceEE
Q 017756 243 V--GMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDK-IVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAG--PTAVA 317 (366)
Q Consensus 243 ~--~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~-~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG--~~~~~ 317 (366)
. ...+.+.+..++..++.+|.++|++.|+++|+.++ .++.....++|+++++++.+++.|++|++||||| +++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~ 311 (350)
T 2cz9_A 232 HRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIA 311 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEE
Confidence 0 01122344446788899999999999999996442 2343334578999999999999999999999999 78899
Q ss_pred EecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEE
Q 017756 318 VVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 318 l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i 358 (366)
|+++ +.++++.++|++.|.+..++.++++++++ ++|+++
T Consensus 312 l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~Ga~~ 350 (350)
T 2cz9_A 312 LVDK-EDAETIGEEILREYLKRFPWKARHFIVEP-SDGVGI 350 (350)
T ss_dssp EEEG-GGHHHHHHHHHHHHHHHCCSCCEEEEECE-ECCSBC
T ss_pred EEch-hhHHHHHHHHHHHHHHhhCCCCcEEEecC-CCCCCC
Confidence 9985 57889999999988876445788999999 689863
No 7
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=4.7e-37 Score=292.52 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=217.9
Q ss_pred eeEEEeeeeecccccChhcccc-----cccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCC--CCCccHHHHHHHHHHH
Q 017756 48 SVKTFAPATVANLGPCFDFLGC-----AVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSK--NPLWNCAGIAAISAMK 120 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~-----~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~--~~~~n~i~~a~~~~~~ 120 (366)
.++++|||||+++|+|.++.|. +++ ++++++++..+. ++.+.+.+ +...++. ..+.|++.++++.+++
T Consensus 13 ~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~-~~~~v~v~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~ 87 (332)
T 2hfs_A 13 TGKNIGYGKVILFGEHFVVHGAEAIVAGIS-EYTECRLEINPG--VPGLQVDD--QRPAIPGYIAQKRDEQIKAHQLVLD 87 (332)
T ss_dssp CSCCEEEEEEEEECTTGGGGTCCEEEEEEE-EEEEEEEEEETT--CCSEEEEE--CCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeEEEEEecCCEEEcCCeEEEEEec-ccEEEEEEEcCC--CCCeEEEe--cCccccccccccchhHHHHHHHHHH
Confidence 4688999999999999986554 454 788888876541 14566532 2222332 0246888899999999
Q ss_pred HhCCCC--cceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhhcC
Q 017756 121 MLGVRS--VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIMGG 196 (366)
Q Consensus 121 ~~g~~~--~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~GG 196 (366)
.++.+. .|++|+++++||.++|||||||+++|++.|++++++++++.++|+++|..+|..++|. +.|+.+ +++||
T Consensus 88 ~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~-~~~Gg 166 (332)
T 2hfs_A 88 HLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTA-ATYGG 166 (332)
T ss_dssp HTTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHH-HHHCE
T ss_pred HcCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHH-HhcCC
Confidence 888642 5899999999999999999999999999999999999999999999999999988763 569874 89999
Q ss_pred eEEEeecCCC-ceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCC----hhH-HHHH-HHHHHHHHHHHHcCCHHH
Q 017756 197 FVLIRSYEPL-DLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVG----MPH-HIWN-CSQAGALVAAVLNGDPVG 269 (366)
Q Consensus 197 ~~~~~~~~~~-~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~----~~~-~i~~-~~~~~~~~~al~~~d~~~ 269 (366)
++++....++ .+++++++ +++++++++|+.+++|+++++.+..... ..+ .... ...+..++.+|.++|++.
T Consensus 167 ~~~~~~~~g~~~~~~~~~~--~~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~ 244 (332)
T 2hfs_A 167 LILYRRQNGKSVFKPIAFQ--QRLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGDLQR 244 (332)
T ss_dssp EEEEEECSSSEEEEEECCC--SCEEEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred eEEEecCCCCcceeeecCC--CCcEEEEEECCCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9887533343 57888776 6899999999999999998875422110 001 1111 124567789999999999
Q ss_pred HHHHHhcC-cccccccCCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHHHc
Q 017756 270 LGKALSSD-KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKE 339 (366)
Q Consensus 270 lg~~l~~~-~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~~~ 339 (366)
|+++|+++ ..++++ ..++|+++++++.+++.|+++++|||||+ ++|+|+++++.++++.+.|++.+.+.
T Consensus 245 l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~~ 316 (332)
T 2hfs_A 245 LGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEA 316 (332)
T ss_dssp HHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhcC
Confidence 99999754 345554 45789999999999999999999999999 67899986556788888888876553
No 8
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.9e-36 Score=295.47 Aligned_cols=296 Identities=19% Similarity=0.249 Sum_probs=220.0
Q ss_pred eeEEEeeeeecccccChhc-----ccccccccCCEEEEEEcCCCCCCcEEEEeecCCCC------CCC-----------C
Q 017756 48 SVKTFAPATVANLGPCFDF-----LGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSK------LSK-----------N 105 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv-----~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~------~~~-----------~ 105 (366)
.++++|||||+++|||.|+ ++.+++ ++++++++..+. +.+++.+...... ++. .
T Consensus 36 ~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~-~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (399)
T 1wuu_A 36 ELAVSAPGRVNLIGEHTDYNQGLVLPMALE-LMTVLVGSPRKD---GLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTP 111 (399)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCEEEEEEEE-EEEEEEEEEETT---CEEEEEECCSSSCSCSEEEEECCCSSCCCCCCSS
T ss_pred CEEEEeeeeEEEeccccccCCCEEEeEEec-ccEEEEEEECCC---CeEEEEECCCCCccccceEEecCccccccccCCC
Confidence 3689999999999999994 445564 888888876543 4566654221100 111 2
Q ss_pred CCccHHHHHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC-
Q 017756 106 PLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY- 184 (366)
Q Consensus 106 ~~~n~i~~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~- 184 (366)
.|.|++.+++..+ + +....|++|+++++||.++|||||||+++|++.|++++++++++.++|+++|..+|..++|.
T Consensus 112 ~~~n~v~~a~~~l-~--~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~ 188 (399)
T 1wuu_A 112 RWANYVKGVIQYY-P--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMP 188 (399)
T ss_dssp GGGHHHHHHHHHC-S--SSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHh-c--CCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3679998777655 3 33236999999999999999999999999999999999999999999999999999987763
Q ss_pred -C-cchhhHhhhcC---eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHH------------HHHhCCcC----C
Q 017756 185 -H-ADNIAPAIMGG---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKK------------MRAALPAE----V 243 (366)
Q Consensus 185 -~-~D~~a~~~~GG---~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~------------~~~~l~~~----~ 243 (366)
+ +||.+ +++|| ..++++. +..+++++++. +++++++++|+.+++|.+ +++.+... .
T Consensus 189 ~G~~D~~~-~~~Gg~~~~~~~~~~-~~~~~~~~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~ 265 (399)
T 1wuu_A 189 CGIMDQFI-SLMGQKGHALLIDCR-SLETSLVPLSD-PKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREV 265 (399)
T ss_dssp CCSHHHHH-HHHCCTTEEEEEETT-TCCEEEEECCC-SSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSC
T ss_pred CccHHHHH-HHhccCCeEEEEecC-CCceEEecCCC-CCeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcC
Confidence 3 79874 89998 3445443 56788888752 489999999998888852 23333110 0
Q ss_pred ------------C------hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCchHHHHHHHHHH-cCC
Q 017756 244 ------------G------MPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDK-IVEPKRAPLIPGMEAVKKVAVE-AGA 303 (366)
Q Consensus 244 ------------~------~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~-~~~~~~~~~~p~l~~l~~~~~~-~Ga 303 (366)
. ..+.+.+.+++..++.+|.++|++.|+++|++++ .++.....++|+++++++.+++ .|+
T Consensus 266 ~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga 345 (399)
T 1wuu_A 266 QLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGV 345 (399)
T ss_dssp CHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTE
T ss_pred CHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc
Confidence 0 0122344445778889999999999999998652 1333335678999999999999 699
Q ss_pred eEEEecccc--CceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEE
Q 017756 304 YGCTISGAG--PTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 304 ~ga~mSGsG--~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~ 359 (366)
+|++||||| +++++|+++ +.++++.+.|++.| + ..+.++++.+ ++|++++
T Consensus 346 ~ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~l~~~~---~-~~~~~~~~~~-~~Ga~~~ 397 (399)
T 1wuu_A 346 YGSRMTGGGFGGCTVTLLEA-SAAPHAMRHIQEHY---G-GTATFYLSQA-ADGAKVL 397 (399)
T ss_dssp EEEEECSSCSEEEEEEEEEG-GGHHHHHHHHHHHC---S-SCCEEEEECC-CCCSEEC
T ss_pred eEEeeecCCCccEEEEEEcc-chHHHHHHHHHHHh---C-CCCcEEEEcC-CCCeeec
Confidence 999999999 667899974 67888888888766 2 3578888887 6999875
No 9
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=3.4e-36 Score=295.40 Aligned_cols=302 Identities=16% Similarity=0.221 Sum_probs=223.9
Q ss_pred eEEEeeeeecccccChhcccc-----cccccCCEEEEEEcCCCCCCcEEEEeecCC---------CCC-C--CCCCccHH
Q 017756 49 VKTFAPATVANLGPCFDFLGC-----AVDGLGDYVSLKVDPSVHPGEVSISEVIGP---------SKL-S--KNPLWNCA 111 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~-----~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~---------~~~-~--~~~~~n~i 111 (366)
++++|||||+++|||.|+.|. +++ ++++++++..+. +.+++.+.... .++ + ...|.|++
T Consensus 49 ~~~~APgkv~L~Geh~d~~G~~~l~~aI~-l~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~v 124 (419)
T 1pie_A 49 EYFFSPGRINLIGEHTDYNGGYVFPASIT-IGTTGLARLRED---KKVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYV 124 (419)
T ss_dssp EEEEEEEEEEEECCSCTTTTCEEEEEEEE-EEEEEEEEECSS---SEEEEEETTCGGGCCEEEETTCTTSCCTTCTHHHH
T ss_pred EEEEeeEEEEEcccceeeCCCEEEEEEEc-ccEEEEEEECCC---CEEEEEECCCCCcceeEEecccccCCCCcCHHHHH
Confidence 689999999999999887654 554 777777776442 45666532110 011 1 13478999
Q ss_pred HHHHHHHHHHhCCCC-cceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC---Ccc
Q 017756 112 GIAAISAMKMLGVRS-VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY---HAD 187 (366)
Q Consensus 112 ~~a~~~~~~~~g~~~-~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~---~~D 187 (366)
.+++..+.+. +... .|++|+++++||.++|||||||+++|++.|+++++++++++++|+++|..+|..+.|. .+|
T Consensus 125 ~~~~~~l~~~-g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D 203 (419)
T 1pie_A 125 KGMIVMLKGA-GYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILD 203 (419)
T ss_dssp HHHHHHHHHT-TCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHH
T ss_pred HHHHHHHHHh-CCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchh
Confidence 7666655443 3322 6899999999999999999999999999999999999999999999999999887763 369
Q ss_pred hhhHhhhcC---eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH------------HHHHhCCc---------CC
Q 017756 188 NIAPAIMGG---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK------------KMRAALPA---------EV 243 (366)
Q Consensus 188 ~~a~~~~GG---~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~------------~~~~~l~~---------~~ 243 (366)
+.+ +++|| .+++++. +..+++++++. ++++++|++|+.+.+|. ++++.+++ ..
T Consensus 204 ~~~-~~~Gg~~~~~~~d~~-~~~~~~l~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~ 280 (419)
T 1pie_A 204 QFA-IGFGEVKKAIELDCN-TLKYEMVPVEL-RDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELS 280 (419)
T ss_dssp HHH-HHHCBTTEEEEEETT-TCCEEEEECCC-TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCC
T ss_pred HHH-HHhccCCeEEEeecC-CCceEEeecCC-CCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCC
Confidence 864 89997 4445544 56788888752 47999999999988774 23333321 00
Q ss_pred C-----------------h-hHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc-cccccCCCCchHHHHHHHHHHc-CC
Q 017756 244 G-----------------M-PHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKI-VEPKRAPLIPGMEAVKKVAVEA-GA 303 (366)
Q Consensus 244 ~-----------------~-~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~~~~-~~~~~~~~~p~l~~l~~~~~~~-Ga 303 (366)
+ + .+.+.+.+++..++.+|.++|++.|+++|+.+|. ++.....++|+++++++.+++. |+
T Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga 360 (419)
T 1pie_A 281 NEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGV 360 (419)
T ss_dssp HHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTE
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCC
Confidence 0 0 1123344467888899999999999999986521 2222345789999999999997 99
Q ss_pred eEEEecccc--CceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 304 YGCTISGAG--PTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 304 ~ga~mSGsG--~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
+|++||||| +++++|+++ +.++++.+.|++.|.+..+..+.++++++ ..|++++.
T Consensus 361 ~ga~lsGaG~Gg~v~al~~~-~~a~~~~~~l~~~~~~~~g~~~~~~~~~~-~~Ga~v~~ 417 (419)
T 1pie_A 361 LGARMTGAGFGGCAIALVAH-DNVSAFRKAVGQVYEEVVGYPASFYVAQI-GSGSTKLD 417 (419)
T ss_dssp EEEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHHHHHHSSCCEEEECCB-CCCSBCC-
T ss_pred ceeeEecCCCCeEEEEEEch-hhHHHHHHHHHHHHHHhcCCCCeEEEEcC-CCCeeecc
Confidence 999999998 667899974 67899999999888765335678999998 58998763
No 10
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=100.00 E-value=3.3e-37 Score=285.59 Aligned_cols=243 Identities=20% Similarity=0.203 Sum_probs=196.5
Q ss_pred eEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
++++||||| ||+ ++++|++.|+ +++++ ++. . +.+++.. . .+|.+ |.|+++++++
T Consensus 5 ~~~~aPaki-nl~--l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~---~~i~i~~---~-~~~~~-~~nlv~~a~~ 70 (271)
T 2v8p_A 5 IKVLSPAKI-NLG--LWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--E---GVLRVET---N-IGIPQ-EENLVYKGLR 70 (271)
T ss_dssp EEEEEEEEE-EEE--EEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--E---SSCEEEE---S-SCCCT-TTCHHHHHHH
T ss_pred EEEeecceE-Eee--EeecccCCCCCceEEEEEEEcCcccEE-EEe--C---CeEEEEe---C-CCCCC-CchHHHHHHH
Confidence 678999999 886 6777666553 66666 654 2 3566643 1 35544 6899999999
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcC
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGG 196 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG 196 (366)
.+++++|.. .+++|+++|+||.++|||||||+++|++.|++++++++++.+||+++|.++|.|+ +++++||
T Consensus 71 ~~~~~~g~~-~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv--------~~~~~gg 141 (271)
T 2v8p_A 71 EFERITGIE-INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADA--------PFFLLGK 141 (271)
T ss_dssp HHHHHHCCC-CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTT--------GGGGTCS
T ss_pred HHHHHhCCC-CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCH--------HHHhcCC
Confidence 999999875 6899999999999999999999999999999999999999999999999999654 3589999
Q ss_pred eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Q 017756 197 FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSS 276 (366)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l~~ 276 (366)
+++..+. ++.+++++++ .++++++++|+.+++|+++|+.++.... .++..+ .+|.++|++.++++|.|
T Consensus 142 ~~~~~g~-g~~~~~l~~~--~~~~~vl~~p~~~~sT~~~~~~~~~~~~--------~~~~~~-~al~~~d~~~~~~~~~n 209 (271)
T 2v8p_A 142 SAIGRGK-GEVLEPVETE--ISGKITLVIPQVSSSTGRVYSSLREEHF--------VTPEYA-EEKIQRIISGEVEEIEN 209 (271)
T ss_dssp EEEEETT-TTEEEECCCC--CCSEEEEEECSSCCCHHHHHHTCCTTSC--------CCHHHH-HHHHHHHHTTCGGGCCB
T ss_pred eEEEEEc-CCEEEEccCC--CCcEEEEEeCCCCCCHHHHHHhcccccC--------cchhHH-HHhhcCCHHHHHHHHhC
Confidence 9998765 5678888732 3799999999999999999998865421 122334 88889999888888765
Q ss_pred CcccccccCCCCchHHHHHHHHHHcCCeEEE-eccccCceEEEecCcchHHHHHH
Q 017756 277 DKIVEPKRAPLIPGMEAVKKVAVEAGAYGCT-ISGAGPTAVAVVDNEEKGKVIGE 330 (366)
Q Consensus 277 ~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~-mSGsG~~~~~l~~~~~~a~~v~~ 330 (366)
+ ++..+...+|+++++++.+++.|+ ++ |||||+++|+|++++++++++.+
T Consensus 210 ~--l~~~~~~~~p~l~~~~~~~~~~Ga--a~~mSGsG~~v~~l~~~~~~a~~~~~ 260 (271)
T 2v8p_A 210 V--LGDIARELYPEINEVYRFVEYLGF--KPFVSGSGSTVYFFGGASEELKKAAK 260 (271)
T ss_dssp H--HHHHHHHHCHHHHHHHHHHHHTTC--CCEECTTSSCEEESSCCCHHHHHHHH
T ss_pred C--hhhHhHHhChHHHHHHHHHHhCCC--ccCccccCcCeEEEeCCHHHHHHHHh
Confidence 4 555555678999999999999998 88 99999999999987667766655
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-36 Score=283.38 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=206.5
Q ss_pred CcceeEEEeeeeecccccChhcccc-----ccccc-CCEEEEEEcCCCCCCc-EEEEeecCCCCCCC-CCCccHHHHHHH
Q 017756 45 VFTSVKTFAPATVANLGPCFDFLGC-----AVDGL-GDYVSLKVDPSVHPGE-VSISEVIGPSKLSK-NPLWNCAGIAAI 116 (366)
Q Consensus 45 ~~~~~~~~aPaki~nlGe~~dv~g~-----~~~~l-~~~v~v~~~~~~~~~~-i~i~~~~g~~~~~~-~~~~n~i~~a~~ 116 (366)
|++.++++|||||+++|||.|+.|. +++ + +++++++..+. +. +++.+...+..++. ..|.|++.++++
T Consensus 3 m~~~~~~~APgkinL~Ge~~d~~g~~~l~~ai~-~~~~~v~v~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (308)
T 2x7i_A 3 MTRKGYGESTGKIILIGEHAVTFGEPAIAVPFN-AGKIKVLIEALES---GNYSSIKSDVYDGMLYDAPDHLKSLVNRFV 78 (308)
T ss_dssp -CCEEEEEEEEEEEEEEBTTCCTTSCEEEEEEE-EEEEEEEEEECCT---TCCCEEEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred cccceEEEEeeEEEEEecCeeecCCeEEEEEEc-CCEEEEEEEECCC---CCeeEEEecCCCCChhhhhHHHHHHHHHHH
Confidence 4556889999999999999987655 333 4 36677765442 34 66654221112332 136789988776
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC--CcchhhHhhh
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY--HADNIAPAIM 194 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~--~~D~~a~~~~ 194 (366)
.+++.+ .|++|+++++||.++|||||||+++|++.|+++++++++++++|+++|..+|..++|. +.|+. ++.+
T Consensus 79 ~~~~~~----~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~-~~~~ 153 (308)
T 2x7i_A 79 ELNNIT----EPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQ-TIVS 153 (308)
T ss_dssp HHTTCC----SCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHH-HHHH
T ss_pred HHHhhC----CCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHH-HhhC
Confidence 665432 4899999999999999999999999999999999999999999999999999887763 56754 4788
Q ss_pred cCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChh-HH--HHH-HHHHHHHHHHHHcCCHHHH
Q 017756 195 GGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMP-HH--IWN-CSQAGALVAAVLNGDPVGL 270 (366)
Q Consensus 195 GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~-~~--i~~-~~~~~~~~~al~~~d~~~l 270 (366)
||.+++. . ++.+++++.+ .++.+++++|+.+++|+++++.+++..+.. +. +.. ...+.+++.+|.++|++.|
T Consensus 154 g~~~~~~-~-g~~~~~~~~~--~~~~~vi~~~~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l 229 (308)
T 2x7i_A 154 GKPVWFQ-K-GHAETLKTLS--LDGYMVVIDTGVKGSTRQAVHDVHKLCEDPQYMSHVKHIGKLVLRASDVIEHHKFEAL 229 (308)
T ss_dssp TSCEEEE-T-TEEEECSCCC--BSSEEEEEECCC--CCSCCCC--------CCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CceEEEE-c-CCCceEeccC--CCceEEEEECcCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988766 3 5567777665 578899999999999998877665432111 10 221 1245677899999999999
Q ss_pred HHHHhcCccccccc--CCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHHHcCCCceEE
Q 017756 271 GKALSSDKIVEPKR--APLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVS 346 (366)
Q Consensus 271 g~~l~~~~~~~~~~--~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~ 346 (366)
+++|+.. ++..+ ..++|+++++++.+++.|+++++|||||+ ++|+|+++++.++++.+.+++ .+ ..++
T Consensus 230 ~~~~~~~--~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~----~~--~~~~ 301 (308)
T 2x7i_A 230 ADIFNEC--HADLKALTVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEK----AG--AAHT 301 (308)
T ss_dssp HHHHHHH--HHHHHHHSCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHH----TT--CSEE
T ss_pred HHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHh----CC--CceE
Confidence 9998754 33332 34789999999999999999999999999 789999864567666666655 33 2466
Q ss_pred EEeee
Q 017756 347 MVKRL 351 (366)
Q Consensus 347 ~~~~~ 351 (366)
++..+
T Consensus 302 ~~~~~ 306 (308)
T 2x7i_A 302 WIENL 306 (308)
T ss_dssp EEEEC
T ss_pred eeEeC
Confidence 77665
No 12
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=2.1e-35 Score=281.59 Aligned_cols=286 Identities=13% Similarity=0.077 Sum_probs=211.4
Q ss_pred eeEEEeeeeecccccCh-hc-----ccccccccCCEEEEEEcCCCCCCcEEEEeecCCCC---CCCCCCccHHHHHHHHH
Q 017756 48 SVKTFAPATVANLGPCF-DF-----LGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSK---LSKNPLWNCAGIAAISA 118 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~-dv-----~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~---~~~~~~~n~i~~a~~~~ 118 (366)
.++++||||++++|||. ++ ++.+++ ++.+++++. + +.+++.+...+.. .+.+.| |++.+++..+
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~-~~~~v~v~~--~---~~~~i~s~~~~~~~~~~~~~~~-~~v~~~i~~~ 75 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIP-IYMRAEIAF--S---DSYRIYSDMFDFAVDLRPNPDY-SLIQETIALM 75 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEE-EEEEEEEEE--C---SSCEEEETTSSSCBCSSCCTTT-HHHHHHHHHH
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEcc-ccEEEEEEe--C---CcEEEecCCCCceeeecCCCCc-HHHHHHHHHH
Confidence 47899999999999999 44 444554 665565553 3 2466654221111 122334 8988888777
Q ss_pred HHHh---CCCCcceEEEEeeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--CCcchhh
Q 017756 119 MKML---GVRSVGLSLSLEKGLPLG---SGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG--YHADNIA 190 (366)
Q Consensus 119 ~~~~---g~~~~g~~I~i~~~IP~g---aGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g--~~~D~~a 190 (366)
.+++ |.+..|++|+++++||.+ +|||||||+++|++.|++++++++++.++|+++|..+|..+.+ +++|+.+
T Consensus 76 ~~~~~~~g~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~ 155 (337)
T 2pg9_A 76 GDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLAC 155 (337)
T ss_dssp HHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7654 444579999999999999 9999999999999999999999999999999999999955433 3678664
Q ss_pred HhhhcCeEEEeecC---------------------CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHH
Q 017756 191 PAIMGGFVLIRSYE---------------------PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHI 249 (366)
Q Consensus 191 ~~~~GG~~~~~~~~---------------------~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i 249 (366)
+++||++++...+ +..+++++++ +++++++++|+.+++|+++++.++.... .+.+
T Consensus 156 -~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~~~lvl~~~~~~~~T~~~~~~~~~~~~-~~~~ 231 (337)
T 2pg9_A 156 -IAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT--LECDFLVGWTKEVAVSSHMVQQIKQNIN-QNFL 231 (337)
T ss_dssp -HHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC--SCCEEEEEECCCCCCHHHHHHHHGGGCC-HHHH
T ss_pred -HHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCC--CCceEEEEECCCccchHHHHHHHHHHHH-HHHH
Confidence 8999998876321 2457787766 6899999999999999999988865433 2333
Q ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC--CCCchHHHHHHHHHHcCCeEEEecccc--CceEEEecCcch
Q 017756 250 WN-CSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRA--PLIPGMEAVKKVAVEAGAYGCTISGAG--PTAVAVVDNEEK 324 (366)
Q Consensus 250 ~~-~~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~--~~~p~l~~l~~~~~~~Ga~ga~mSGsG--~~~~~l~~~~~~ 324 (366)
.+ ...+.+++.+|.++|++.|+++|+++|....... .++|+++++++.+++.|++ ++||||| +++|+|+++++.
T Consensus 232 ~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~~~~ 310 (337)
T 2pg9_A 232 TSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIALSFDAQS 310 (337)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEEEECCHHH
Confidence 33 2356778999999999999999987632222222 5789999999999999998 9999999 456889876555
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEeee
Q 017756 325 GKVIGEKMVEAFWKEGNLKAVSMVKRL 351 (366)
Q Consensus 325 a~~v~~~l~~~~~~~g~~~~~~~~~~~ 351 (366)
++++.++ |.+.|. ...|+.++
T Consensus 311 ~~~~~~~----l~~~g~--~~~~~~~~ 331 (337)
T 2pg9_A 311 TKTLKNR----WADLGI--ELLYQERI 331 (337)
T ss_dssp HHHHHHH----HHHTTC--EEEEEEEC
T ss_pred HHHHHHH----HHHCCC--EEEEEeec
Confidence 5555544 445552 23455554
No 13
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=9.4e-36 Score=283.03 Aligned_cols=295 Identities=17% Similarity=0.172 Sum_probs=223.3
Q ss_pred cceeEEEeeeeecccccC-----------hhcccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHH
Q 017756 46 FTSVKTFAPATVANLGPC-----------FDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIA 114 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~-----------~dv~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a 114 (366)
.++.+++||++|+++++| +|.+|.+++.++++++++..+....+.+.+ +|. .++.+ +.|+++++
T Consensus 7 ~~~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~~~~~~~v~~~~~~~~~~~~i---~g~-~~~~~-~~n~v~~~ 81 (332)
T 3qt5_A 7 VKSGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDRFYTETKVTFDPDFTEDCLIL---NGN-EVNAK-EKEKIQNY 81 (332)
T ss_dssp CEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEETTCSSCEEEE---TTE-ECCHH-HHHHHHHH
T ss_pred eEEEEEEecCcEEEEeeeeeccCCccccCCCceEEEecCCCCeeEEEEcCCCCccEEEE---CCc-cCCcc-hHHHHHHH
Confidence 346789999999999875 456777776567888887655311134443 343 24433 68999999
Q ss_pred HHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhh
Q 017756 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIM 194 (366)
Q Consensus 115 ~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~ 194 (366)
++.++++++.+ .+++|+++++||.++|||||||+++|++.|++++++++++.+||.++|.++|.+ ++++++
T Consensus 82 ~~~~~~~~~~~-~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~--------~~~~~~ 152 (332)
T 3qt5_A 82 MNIVRDLAGNR-LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGS--------ASRSIF 152 (332)
T ss_dssp HHHHHHHHTCC-CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGG--------GGGGGS
T ss_pred HHHHHHhcCCC-CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC--------chhhhc
Confidence 99999999985 689999999999999999999999999999999999999999999999998753 346899
Q ss_pred cCeEEEe-ecCCCc--eEEeeC-CCcCceEEEEEcCCCCc---chHHHHHhC-CcCCChhHHHHHHH-HHHHHHHHHHcC
Q 017756 195 GGFVLIR-SYEPLD--LMRLNF-PEKKQLLFVLVTPEFEA---PTKKMRAAL-PAEVGMPHHIWNCS-QAGALVAAVLNG 265 (366)
Q Consensus 195 GG~~~~~-~~~~~~--~~~l~~-~~~~~~~~vl~~p~~~~---sT~~~~~~l-~~~~~~~~~i~~~~-~~~~~~~al~~~ 265 (366)
||++++. +.++.. .++++. ..+++++++++.|+... ++.++++.. +....+.+.+.+.. ++..++.||.++
T Consensus 153 GG~~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~~~~~~~~l~~Al~~~ 232 (332)
T 3qt5_A 153 GGFAEWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDHVDEDLNEAKEAVKNQ 232 (332)
T ss_dssp CSEEEEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999864 322222 356651 12258999999998754 334444333 33334455555444 688899999999
Q ss_pred CHHHHHHHHhcC--cccccccCC------CCchHHHHHHHHH---HcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 266 DPVGLGKALSSD--KIVEPKRAP------LIPGMEAVKKVAV---EAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 266 d~~~lg~~l~~~--~~~~~~~~~------~~p~l~~l~~~~~---~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
|++.|+++|.+| .+|+.++.. ..|+++++++.++ +.|++++.||||||++|+|+++ ++++++.+.|++
T Consensus 233 D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaGPtv~~l~~~-~~a~~v~~~l~~ 311 (332)
T 3qt5_A 233 DFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAGPNVKVLVEK-KNKQAVMEQFLK 311 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSCEEEEEEH-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCCCcEEEEECH-HHHHHHHHHHHH
Confidence 999999999866 667776654 6799999888885 7899999999999999999984 578888888877
Q ss_pred HHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 335 AFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 335 ~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
.|+ ..+++++.....|+++++
T Consensus 312 ~~~-----~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 312 VFD-----ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp TSC-----GGGEEEEEBCSSCCEECC
T ss_pred hCC-----CceEEEeccccCCcEecC
Confidence 554 367888845589998753
No 14
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=7.6e-35 Score=289.94 Aligned_cols=300 Identities=19% Similarity=0.223 Sum_probs=224.3
Q ss_pred eeEEEeeeeecccccChhcccc-----cccccCCEEEEEEcCCCCCCcEEEEeecCC--------CCCC----CCCCccH
Q 017756 48 SVKTFAPATVANLGPCFDFLGC-----AVDGLGDYVSLKVDPSVHPGEVSISEVIGP--------SKLS----KNPLWNC 110 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~-----~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~--------~~~~----~~~~~n~ 110 (366)
.++++||||++|+|||.|+.|. +++ ++++++++..+. +.+++.+.... ..++ ...|.|+
T Consensus 55 ~~~~~APgrv~L~Geh~D~~g~~vl~~AI~-~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~l~~~~~~~~~~n~ 130 (478)
T 2a2c_A 55 KFYVRAPGRVNIIGEHIDYCGYSVLPMAVE-QDVLIAVEPVKT---YALQLANTNPLYPDFSTSANNIQIDKTKPLWHNY 130 (478)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCCBEEEEEE-EEEEEEEEECSS---SCEEEEESSTTSCCEEECCCCC--CCSSCCHHHH
T ss_pred CEEEEeceEEEEeccceeeCCCeEEEEEec-ccEEEEEEECCC---CeEEEEECCCCCcceeccchhcccCCCcccHHHH
Confidence 4789999999999999887554 443 777777766542 46776543210 0111 1235699
Q ss_pred HHHHHHHHHHHhCC-CCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc--cCCCcc
Q 017756 111 AGIAAISAMKMLGV-RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV--SGYHAD 187 (366)
Q Consensus 111 i~~a~~~~~~~~g~-~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v--~g~~~D 187 (366)
+.++++.+++.++. ...|++|.++++||.|+|||||||+++|++.|++.+++.++++++|+++|..+|..+ +.+.+|
T Consensus 131 v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D 210 (478)
T 2a2c_A 131 FLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMD 210 (478)
T ss_dssp HHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHH
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHH
Confidence 98888888888875 136999999999999999999999999999999999999999999999999999743 234799
Q ss_pred hhhHhhhc---CeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchH-------------HHHHhCCc----------
Q 017756 188 NIAPAIMG---GFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK-------------KMRAALPA---------- 241 (366)
Q Consensus 188 ~~a~~~~G---G~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~-------------~~~~~l~~---------- 241 (366)
|++ +++| |..+.++. +..+++++++ +++.++|++|+.+.+|. .+.+.+++
T Consensus 211 ~~a-~~~G~~g~~~~i~f~-~~~~~~~~~~--~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~ 286 (478)
T 2a2c_A 211 QSI-SFLAEEGTAKLIEFS-PLRATDVKLP--SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVL 286 (478)
T ss_dssp HHH-HHHCBTTBEEEEETT-TTEEEEECCC--TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCC
T ss_pred HHH-HHhccCCcEEEEEcC-CCceEEecCC--CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccc
Confidence 997 7887 66666654 5678888877 68999999999887653 11111110
Q ss_pred --------------------------C-CC----------------------------------hh-HHHHHHHHHHHHH
Q 017756 242 --------------------------E-VG----------------------------------MP-HHIWNCSQAGALV 259 (366)
Q Consensus 242 --------------------------~-~~----------------------------------~~-~~i~~~~~~~~~~ 259 (366)
. .. +. +.+.+..++.+++
T Consensus 287 ~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~~rv~~~~ 366 (478)
T 2a2c_A 287 RLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFK 366 (478)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 11 1233555678888
Q ss_pred HHHHc---CCHHHHHHHHhcCccccccc---CCCCchHHHHHHHHHHcCCeEEEeccccCc--eEEEecCcchHHHHHHH
Q 017756 260 AAVLN---GDPVGLGKALSSDKIVEPKR---APLIPGMEAVKKVAVEAGAYGCTISGAGPT--AVAVVDNEEKGKVIGEK 331 (366)
Q Consensus 260 ~al~~---~d~~~lg~~l~~~~~~~~~~---~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~--~~~l~~~~~~a~~v~~~ 331 (366)
.+|.+ +|++.|+++|+++ |+.++ ..++|+++++++.+++.|++|++|||+|+| +++|++ ++.++++.+.
T Consensus 367 ~aL~~~~~~d~~~lg~lm~~s--h~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~-~~~~~~~~~~ 443 (478)
T 2a2c_A 367 KICEEAPENMVQLLGELMNQS--HMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVP-ADKLPSFLAN 443 (478)
T ss_dssp HHHHHCCTTHHHHHHHHHHHH--HHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEE-GGGHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHH--HHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEc-HHHHHHHHHH
Confidence 99998 9999999999887 55544 267899999999999999999999999854 577887 4678899999
Q ss_pred HHHHHHHcCC-----CceEEEEeeeCCCceEEE
Q 017756 332 MVEAFWKEGN-----LKAVSMVKRLDRVGARLV 359 (366)
Q Consensus 332 l~~~~~~~g~-----~~~~~~~~~~~~~Ga~i~ 359 (366)
|++.|.+..+ ....++++++ ..|+++.
T Consensus 444 l~~~y~~~~~~~~~~~~~~~~~~~p-~~Ga~~~ 475 (478)
T 2a2c_A 444 VHKAYYQRSDGSLAPEKQSLFATKP-GGGALVL 475 (478)
T ss_dssp HHHHHHC---------CCSEEEECC-BCCCEEE
T ss_pred HHHHHHHhcCccccCCCCcEEEEcC-CCCeEee
Confidence 9998876542 1346788888 5999876
No 15
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=100.00 E-value=1.2e-35 Score=275.63 Aligned_cols=255 Identities=22% Similarity=0.254 Sum_probs=196.3
Q ss_pred eEEEeeeeecccccChhcccccccc------------cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 49 VKTFAPATVANLGPCFDFLGCAVDG------------LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~~~~~------------l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
+++ ||||| ||+ ++++|.+.|+ +|++++++.. . -.+.. ++ .++ ..|+++++++
T Consensus 2 i~~-aPaki-nl~--l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~-~---~~i~~---~~--~~~---~~n~v~~a~~ 65 (275)
T 1uek_A 2 ERL-APAKV-NLG--LSVRFRREDGYHELHTLFAPFSLADRLVVEPV-S---SGLHF---QG--PYG---RENLAYRAAS 65 (275)
T ss_dssp EEE-EEEEE-EEE--EEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE-S---SCEEE---ES--TTG---GGSHHHHHHH
T ss_pred cee-ecCeE-EEe--eeecCcCCCCCceeeEEEEEcCCCCEEEEEEC-c---EEEEE---cC--CCC---CccHHHHHHH
Confidence 456 99999 886 7777776663 5666666542 1 23332 12 244 4799999999
Q ss_pred HHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhcC
Q 017756 117 SAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGG 196 (366)
Q Consensus 117 ~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~GG 196 (366)
.++++++.. .|++|+++|+||.++|||||||+++|++.|+++++++++ +|+++|.++|.|+ +++++||
T Consensus 66 ~~~~~~g~~-~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv--------~~~~~Gg 133 (275)
T 1uek_A 66 LYLEAAGQP-GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADV--------PFFLLGR 133 (275)
T ss_dssp HHHHHTTCC-CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTH--------HHHHHCS
T ss_pred HHHHHhCCC-CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCCh--------HHHhcCC
Confidence 999998874 699999999999999999999999999999999999998 8999999998654 4589999
Q ss_pred eEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCc-CC-ChhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 017756 197 FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPA-EV-GMPHHIWNCSQAGALVAAVLNGDPVGLGKAL 274 (366)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~-~~-~~~~~i~~~~~~~~~~~al~~~d~~~lg~~l 274 (366)
+++..+. ++.+++++ + +++++++++|+.+++|+++++.++. .. ... .+..++.+|.++ ++. +.|
T Consensus 134 ~~~~~g~-g~~~~~l~-~--~~~~~vl~~p~~~~sT~~~~~~~~~~~~~~~~-------~~~~~~~al~~~-~~~--~~~ 199 (275)
T 1uek_A 134 GAEARGV-GERLKPLA-L--PPVPAVVFFPGLRVPTPLVYRAVRPEDFGPDL-------PVEAILEALARG-EEP--PYW 199 (275)
T ss_dssp EEEEETT-TTEEEEEC-C--CCEEEEEEECCCCCCHHHHHHTCCGGGCCCCC-------CHHHHHHHHHHT-CCC--SCC
T ss_pred eEEEEcc-CceeEEcc-C--CCcEEEEEeCCCCCchHHHHHhCchhhcccCC-------ChHHHHHHHHhc-ccc--ccc
Confidence 9998765 56788887 4 6899999999999999999998863 21 111 134456777666 443 345
Q ss_pred hcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCC
Q 017756 275 SSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRV 354 (366)
Q Consensus 275 ~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~ 354 (366)
|+ +|+++...+|+++++++.+++.|+++++|||||+++|+|+++++.++++.+.+++ . . +++++++.+.
T Consensus 200 -n~--l~~~~~~~~p~l~~l~~~~~~~Ga~ga~~SGsG~~v~~l~~~~~~~~~~~~~l~~----~---~-~~~~~~~~~g 268 (275)
T 1uek_A 200 -NS--LEGPAFRLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAEGPDHARRAAEALRA----W---G-RAWAGTLGGG 268 (275)
T ss_dssp -BT--THHHHHHHCTHHHHHHHHHHHTTCEEEEECTTSSCEEEECSSHHHHHHHHHHHTT----T---S-EEEEEEECCC
T ss_pred -cc--hHHHHHHhChHHHHHHHHHHhCCCCEEEEeccccCeEEEeCCHHHHHHHHHHhhh----c---c-EEEEEEecCC
Confidence 55 5776666789999999999999999999999999999999865566666655543 2 3 6888888776
Q ss_pred ce
Q 017756 355 GA 356 (366)
Q Consensus 355 Ga 356 (366)
|+
T Consensus 269 ~~ 270 (275)
T 1uek_A 269 DA 270 (275)
T ss_dssp --
T ss_pred CC
Confidence 65
No 16
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=1.1e-34 Score=274.50 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=205.9
Q ss_pred CcceeEEEeeeeecccccChhccc-----ccccccCCEEEEEEcCCCCCCcEEEEeecCC--------CCCCCCCCc--c
Q 017756 45 VFTSVKTFAPATVANLGPCFDFLG-----CAVDGLGDYVSLKVDPSVHPGEVSISEVIGP--------SKLSKNPLW--N 109 (366)
Q Consensus 45 ~~~~~~~~aPaki~nlGe~~dv~g-----~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~--------~~~~~~~~~--n 109 (366)
.++.++++|||||+++|||.|+.| .+++ ++++++++..+. +.+++.....+ ...+.+ .. +
T Consensus 2 ~~~~~~~~APgki~L~geh~~~~G~~~l~~ai~-~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (317)
T 1kkh_A 2 RGSHMIIETPSKVILFGEHAVVYGYRAISMAID-LTSTIEIKETQE---DEIILNLNDLNKSLGLNLNEIKNIN-PNNFG 76 (317)
T ss_dssp TTCCEEEEEEEEEEEECTTGGGGTCCEEEEEEE-EEEEEEEEECCS---SEEEEEETTTTEEEEEETTTGGGCC-GGGSG
T ss_pred CCCCEEEEccEEEEEEcCCeeEcCCEEEEEEec-CeEEEEEEECCC---CeEEEEeCCCCCceEEEeccCCccC-cccch
Confidence 356789999999999998887655 4554 778888776542 45666432111 001222 12 3
Q ss_pred HHHHHHHHHHH---HhCCC-CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCC-
Q 017756 110 CAGIAAISAMK---MLGVR-SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGY- 184 (366)
Q Consensus 110 ~i~~a~~~~~~---~~g~~-~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~- 184 (366)
++.+++..+.+ +++.. ..|++|+++++||.++|||||||+++|++.|++++++++++.++|+++|..+|..++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~ 156 (317)
T 1kkh_A 77 DFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKA 156 (317)
T ss_dssp GGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 46566555443 34421 36899999999999999999999999999999999999999999999999999988763
Q ss_pred -CcchhhHhhhcCeEEEeecCCCceEEeeCCCcC----ceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHH
Q 017756 185 -HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKK----QLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALV 259 (366)
Q Consensus 185 -~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~----~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~ 259 (366)
++|+. ++++||++++ . ++.+++++.+..+ ++++++++|+.+++|.++++.++......+.+.+ ....+.
T Consensus 157 sg~D~~-~~~~Gg~~~~--~-~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~--~~~~~~ 230 (317)
T 1kkh_A 157 SITDTS-TITYKGILEI--K-NNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKE--IDKVID 230 (317)
T ss_dssp CSHHHH-HHHHCSEEEE--S-SSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTTHHHHHHH--HHHHHH
T ss_pred chHHHH-HHHhCCeEEE--c-CCCceEecCCcccccccCcEEEEEECCCcCcHHHHHHHHHHhhccHHHHHH--HHHHHH
Confidence 67875 5899999877 2 4567777643111 2589999999999999999876544333122211 122356
Q ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHHHH
Q 017756 260 AAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 260 ~al~~~d~~~lg~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~~~ 337 (366)
.++..+|++.|+++|+.++........++|+++++++.+++.| ++++|||||+ ++|+|++++ .++++.+.+++
T Consensus 231 ~a~~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~-~~~~~~~~l~~--- 305 (317)
T 1kkh_A 231 EALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEE-KEKELLKELNK--- 305 (317)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGG-GHHHHHHHHHT---
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechh-hHHHHHHHHHh---
Confidence 7888999999999986432111112335899999999999999 9999999999 678898743 46666665543
Q ss_pred HcCCCceEEEEeeeCC
Q 017756 338 KEGNLKAVSMVKRLDR 353 (366)
Q Consensus 338 ~~g~~~~~~~~~~~~~ 353 (366)
.+ .++++++++|
T Consensus 306 -~g---~~~~~~~~~n 317 (317)
T 1kkh_A 306 -ED---VRIFNCRMMN 317 (317)
T ss_dssp -SS---CEEEEECBCC
T ss_pred -cC---CEEEEEEecC
Confidence 43 5678777753
No 17
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=8.3e-35 Score=280.07 Aligned_cols=297 Identities=18% Similarity=0.176 Sum_probs=211.5
Q ss_pred CcceeEEEeeeeecccccChhcc-ccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC--C------CC-CCCCccHHH
Q 017756 45 VFTSVKTFAPATVANLGPCFDFL-GCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS--K------LS-KNPLWNCAG 112 (366)
Q Consensus 45 ~~~~~~~~aPaki~nlGe~~dv~-g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~--~------~~-~~~~~n~i~ 112 (366)
|++.++++||||++++|||.|+. |.... ++..++++.+.++ ++. ++.+...+. . +. .+.+.|++.
T Consensus 3 ~~~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~-~~~--~i~s~~~~~~~~~~~~~~~~~~~~~~~yv~ 79 (365)
T 3k17_A 3 LKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDS-ERN--ELWIPHYENPVSWPIGGELKPDGEHWTFTA 79 (365)
T ss_dssp --CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC-SSC--EEECTTCSSCBCCCTTSCCCCSCGGGHHHH
T ss_pred ceeEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEEC-CCc--EEEecCCCcceeeecccCCCCCCChHHHHH
Confidence 34468899999999999999994 66333 2333444444443 112 343221110 1 11 112338887
Q ss_pred HHHHHHHHH---hCCCCcceEEEEeeCCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--
Q 017756 113 IAAISAMKM---LGVRSVGLSLSLEKGLPL----GSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG-- 183 (366)
Q Consensus 113 ~a~~~~~~~---~g~~~~g~~I~i~~~IP~----gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g-- 183 (366)
.++..+.++ .|.+..|++|+++++||. ++|||||||+++|++.|++++++++++.++|+++|..+|..++|
T Consensus 80 ~~i~~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~ 159 (365)
T 3k17_A 80 EAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNG 159 (365)
T ss_dssp HHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 777766543 355557999999999996 67999999999999999999999999999999999999998876
Q ss_pred CCcchhhHhhhcCeEEEeecC----------------------CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCc
Q 017756 184 YHADNIAPAIMGGFVLIRSYE----------------------PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPA 241 (366)
Q Consensus 184 ~~~D~~a~~~~GG~~~~~~~~----------------------~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~ 241 (366)
+++|+.+ +++||+++++..+ +..+++++++ ++ ++++++|+.+.+|+++++.++.
T Consensus 160 ~g~D~~~-~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~--~~-~lll~~t~~~~sT~~~~~~v~~ 235 (365)
T 3k17_A 160 SCGDIAS-CMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP--VP-TFSVGWTGTPVSTGKLVSQIHA 235 (365)
T ss_dssp CSHHHHH-HHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCC--SS-EEEEEECSCCCCHHHHHHHHHH
T ss_pred CcccHHH-HhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCC--cc-cEEEEECCCccchHHHHHHHHH
Confidence 3788775 8999998876321 4567888776 57 8999999999999998877643
Q ss_pred CC---C--hhHHHHHH-HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC------CCchHHHHHHHHHHcCCeEEEec
Q 017756 242 EV---G--MPHHIWNC-SQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAP------LIPGMEAVKKVAVEAGAYGCTIS 309 (366)
Q Consensus 242 ~~---~--~~~~i~~~-~~~~~~~~al~~~d~~~lg~~l~~~~~~~~~~~~------~~p~l~~l~~~~~~~Ga~ga~mS 309 (366)
.. + ..+.+.+. +++.+++.+|.++|++.|+++|+++|........ ++|+++++++.+++.|+. ++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~s 314 (365)
T 3k17_A 236 FKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGA-GKSS 314 (365)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTSE-EEEC
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCCE-EEec
Confidence 21 1 12233332 3468889999999999999999866322222333 789999999999999998 9999
Q ss_pred cccCc--eEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCce
Q 017756 310 GAGPT--AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGA 356 (366)
Q Consensus 310 GsG~~--~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga 356 (366)
|||+| +++|+++++.++++ .++|.+.| ...+.+.++..|.
T Consensus 315 GAGgGg~vial~~~~~~~~~l----~~~l~~~g---~~~~~~~~~~~~~ 356 (365)
T 3k17_A 315 GSGGGDCGIAFSKTKELAEKL----VNEWEKLG---IKHLPFHTGRVQI 356 (365)
T ss_dssp TTCSSSEEEEEESSHHHHHHH----HHHHHHTT---CEECCCCBCCCEE
T ss_pred CCCCCCEEEEEECCHHHHHHH----HHHHHHCC---CEEEEEEeccccc
Confidence 99954 57788754445444 44555555 5666666665554
No 18
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=1.1e-34 Score=282.70 Aligned_cols=298 Identities=17% Similarity=0.139 Sum_probs=208.5
Q ss_pred eeEEEeeeeecccccChhccccccc----ccCCEEEEEEcCCCCCCcEEEEeecCC-------CCCC-------------
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD----GLGDYVSLKVDPSVHPGEVSISEVIGP-------SKLS------------- 103 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~----~l~~~v~v~~~~~~~~~~i~i~~~~g~-------~~~~------------- 103 (366)
.++++|||||+++|||.|+.|.... +++.+++++..+. +.+++...+.. .+++
T Consensus 5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSN---GKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVP 81 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSS---SEEEEEETTTTEEEEEEHHHHHTSCC---------
T ss_pred cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCC---CeEEEEcCCCCceEEEEhHhhhhhhcccccccccc
Confidence 4789999999999999998877443 3666666665432 45655421110 0000
Q ss_pred ---------------CCCCccHH----HHHH-HHHHHHhCC--CCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHh
Q 017756 104 ---------------KNPLWNCA----GIAA-ISAMKMLGV--RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMF 161 (366)
Q Consensus 104 ---------------~~~~~n~i----~~a~-~~~~~~~g~--~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~ 161 (366)
...|.|++ .+++ +.+.+..+. ...|++|+++++||.|+|||||||+++|++.|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~ 161 (395)
T 1kvk_A 82 APTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTAC 161 (395)
T ss_dssp -------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 01366762 2222 223333454 1369999999999999999999999999999999999
Q ss_pred CC-----CCC-------HH---HHHHHHHHhhhhccCC--CcchhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEEEE
Q 017756 162 GN-----KLL-------PD---ELVIAGLESEAKVSGY--HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLV 224 (366)
Q Consensus 162 ~~-----~ls-------~~---eL~~la~~~e~~v~g~--~~D~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~ 224 (366)
++ +++ .+ +|.++|..+|..++|. +.|+++ +++||++++. .+ .+++++.+ ++++++++
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~-~~~Gg~~~~~--~~-~~~~l~~~--~~~~~vl~ 235 (395)
T 1kvk_A 162 EEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV-STWGGALRYQ--QG-KMSSLKRL--PALQILLT 235 (395)
T ss_dssp TSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH-HHHCSEEEES--SS-CEEECSCC--CCEEEEEE
T ss_pred CcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHH-hhhcceEEEc--CC-CceeccCC--CCcEEEEE
Confidence 99 788 74 5556688899877763 559887 8999998863 23 67888765 68999999
Q ss_pred cCCCCcchHHHHHhCCcC---CC-hhH-HHHHHH-HHHHHHH-------HHHcCCHHHHHHHHhcCcc-cccccCCCCch
Q 017756 225 TPEFEAPTKKMRAALPAE---VG-MPH-HIWNCS-QAGALVA-------AVLNGDPVGLGKALSSDKI-VEPKRAPLIPG 290 (366)
Q Consensus 225 ~p~~~~sT~~~~~~l~~~---~~-~~~-~i~~~~-~~~~~~~-------al~~~d~~~lg~~l~~~~~-~~~~~~~~~p~ 290 (366)
+|+.+++|+++++.+... .+ ..+ .+.... .+.+... ++.++|++.|+++|+.+|. ++. ...++|+
T Consensus 236 ~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~-~~~~~p~ 314 (395)
T 1kvk_A 236 NTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNA-LGVGHAS 314 (395)
T ss_dssp ECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-HTCCCHH
T ss_pred ECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-cCCCCHH
Confidence 999999999876544221 00 000 111111 1222223 3445899999999985522 222 3567899
Q ss_pred HHHHHHHHHHcCCeEEEecccc--CceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 291 MEAVKKVAVEAGAYGCTISGAG--PTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 291 l~~l~~~~~~~Ga~ga~mSGsG--~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
++++++.+++.|+ |++||||| +++|+|+++ +..+++.+.+.+.|.+.+ .+++++++++.|+++..
T Consensus 315 l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 315 LDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKP-GLERAKVEAAKQALTGCG---FDCWETSIGAPGVSMHS 381 (395)
T ss_dssp HHHHHHHHHHTTC-EEEECSSCSSSEEEEEECT-TCCHHHHHHHHHHHHHTT---CEEEEEEESCCCSEEEC
T ss_pred HHHHHHHHHHcCC-ceeeccCCCCCEEEEEecC-CCCHHHHHHHHHHHHHcC---CEEEEEecCCCcEEEEe
Confidence 9999999999999 99999999 567888874 445667777777787765 56899998899999875
No 19
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=2e-34 Score=269.27 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=193.8
Q ss_pred eEEEeeeeecccccChhcccc-----cccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHHHHHHHhC
Q 017756 49 VKTFAPATVANLGPCFDFLGC-----AVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLG 123 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~g~-----~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~~~~~~~g 123 (366)
++++|||||+++|||.|+.|. ++++++++++++... +.+++. +. + ..|++.++++.+ .+
T Consensus 6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~----~~~~i~---~~-----~-~~~~~~~~~~~~---~~ 69 (292)
T 2oi2_A 6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE----SPWRLY---EE-----D-TLSMAVYASLEY---LN 69 (292)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS----SCCCCC---CC-----S-HHHHHHHHHHHH---HT
T ss_pred EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC----CceEEE---ec-----C-ccchhhhhhHHH---hc
Confidence 688999999999998876554 552377777776532 233332 11 1 247776665432 36
Q ss_pred CCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--CCcchhhHhhhcCeEEEe
Q 017756 124 VRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG--YHADNIAPAIMGGFVLIR 201 (366)
Q Consensus 124 ~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g--~~~D~~a~~~~GG~~~~~ 201 (366)
+...|++|+++++||.++|||||||+++|++.|++++++++++.++|+++|.++|...++ .+.|+++ +.+||++++.
T Consensus 70 ~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~-~~~gg~~~~~ 148 (292)
T 2oi2_A 70 ITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKT-CLSDQPIRFI 148 (292)
T ss_dssp CSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHH-HTCSSCEEEE
T ss_pred ccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHH-HhcCceEEEE
Confidence 533689999999999999999999999999999999999999999999999999853333 2458876 7899998773
Q ss_pred ecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCCh-hHHHHHHH-HHHHHHHHHHcCCHHHHHHHHhcCcc
Q 017756 202 SYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGM-PHHIWNCS-QAGALVAAVLNGDPVGLGKALSSDKI 279 (366)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~-~~~i~~~~-~~~~~~~al~~~d~~~lg~~l~~~~~ 279 (366)
. ++.+++++++. +.+ +++++|+.+++|+++++.++...+. .+.+.... .+..++.+|.++|++.|+++|+.++.
T Consensus 149 -~-~~~~~~~~~~~-~~~-~~i~~~~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~ 224 (292)
T 2oi2_A 149 -K-NVGFTELEMDL-SAY-LVIADTGVYGHTREAIQVVQNKGKDALPFLHALGELTQQAEIAISQKDAEGLGQILSQAHL 224 (292)
T ss_dssp -T-TTEEEECCCCC-SCE-EEEEECSSCCCHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -c-CCCceeecCCC-CCE-EEEEECCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 55678876542 344 8888999999999999877654332 23333322 35577899999999999999975432
Q ss_pred cccccCCCCchHHHHHHHHHHcCCeEEEeccccC--ceEEEecCcchHHHHHHHHHHH
Q 017756 280 VEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEA 335 (366)
Q Consensus 280 ~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~--~~~~l~~~~~~a~~v~~~l~~~ 335 (366)
........+|+++++++.+++.|+++++|||||+ ++|+|+++++.++++.+.+++.
T Consensus 225 ~l~~~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~ 282 (292)
T 2oi2_A 225 HLKEIGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEK 282 (292)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhc
Confidence 2222456789999999999999999999999999 7899998655677777766653
No 20
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=100.00 E-value=1e-34 Score=270.27 Aligned_cols=245 Identities=24% Similarity=0.292 Sum_probs=185.7
Q ss_pred eeEEEeeeeeccc-----ccChh------cccccccccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHHHHHH
Q 017756 48 SVKTFAPATVANL-----GPCFD------FLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAAI 116 (366)
Q Consensus 48 ~~~~~aPaki~nl-----Ge~~d------v~g~~~~~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~~ 116 (366)
++.++||||| || |+|.| .+..+++ +|++++++..+. +.+++.+. . ..+| + +.|+++++++
T Consensus 2 ~~~~~apaKi-nL~L~v~g~~~dGyh~l~sl~~ai~-l~~~v~v~~~~~---~~i~i~~~-~-~~~~-~-~~nlv~~a~~ 72 (283)
T 2ww4_A 2 RTQWPSPAKL-NLFLYITGQRADGYHTLQTLFQFLD-YGDTISIELRDD---GDIRLLTP-V-EGVE-H-EDNLIVRAAR 72 (283)
T ss_dssp EEEEEEEEEE-EEEEEEEEECTTSCEEEEEEEEEEE-EEEEEEEEEESS---SCEEECSC-B-TTBC-G-GGSHHHHHHH
T ss_pred CccccCceeE-EeeeeccCCCCCCCcceEEEEEECC-CCcEEEEEECCC---CcEEEEeC-C-CCCC-C-cccHHHHHHH
Confidence 3567899999 66 55544 3334453 788888876542 46766431 1 1344 2 4799999999
Q ss_pred HHHHHh------CCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhh
Q 017756 117 SAMKML------GVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIA 190 (366)
Q Consensus 117 ~~~~~~------g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a 190 (366)
.+++++ |.. .|++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|.++|.|+ +
T Consensus 73 ~~~~~~~~~~~~g~~-~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv--------~ 143 (283)
T 2ww4_A 73 LLMKTAADSGRLPTG-SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADV--------P 143 (283)
T ss_dssp HHHHHHHHTTCSCTT-CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTH--------H
T ss_pred HHHHHhhhhcccCCC-CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCH--------H
Confidence 998888 874 6999999999999999999999999999999999999999999999999999653 4
Q ss_pred HhhhcCeEEEeecCCCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHHHHHHHHHHHcCCHHHH
Q 017756 191 PAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGL 270 (366)
Q Consensus 191 ~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~~~~~~~al~~~d~~~l 270 (366)
++++||+++..+. ++.+++++++ ++++++++|+++++|+++++..+ .+..+...+ +.++.+++
T Consensus 144 ~~~~gg~~~~~g~-g~~~~~l~~~---~~~~vl~~p~~~~sT~~~~~~~~--~~~~~~~~~-------l~~l~~~~---- 206 (283)
T 2ww4_A 144 VFVRGHAAFAEGV-GEILTPVDPP---EKWYLVAHPGVSIPTPVIFKDPE--LPRNTPKRS-------IETLLKCE---- 206 (283)
T ss_dssp HHHHTBCEEEETT-TTEEEECCCC---CCEEEEECCSCCCCHHHHHTCTT--SCCCCCCCC-------HHHHHTSC----
T ss_pred HhhcCCeEEEEec-CccceEcCCC---CcEEEEEeCCCCCchHHHHhccc--ccccchHHH-------HHHHHhhh----
Confidence 5899999987765 5678888653 78999999999999999998743 111111111 11344444
Q ss_pred HHHHhcCcccccccCCCCchHHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHH
Q 017756 271 GKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVE 334 (366)
Q Consensus 271 g~~l~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~ 334 (366)
+.|+ +|+++...+|+++++++.+++.| +++||||||++|+|+++++.++++.+.+++
T Consensus 207 ---~~nd--~~~~~~~~~p~l~~i~~~~~~~G--~a~~SGsG~tvf~l~~~~~~a~~~~~~l~~ 263 (283)
T 2ww4_A 207 ---FSND--CEVIARKRFREVDAVLSWLLEYA--PSRLTGTGACVFAEFDTESEARQVLEQAPE 263 (283)
T ss_dssp ---CCBT--THHHHHHHCHHHHHHHHHHHTTS--CEEECTTSSCEEEEESSHHHHHHHHHHCCC
T ss_pred ---hcCc--hHHHHHhcChHHHHHHHHHHHcC--CceECCcccceEEEeCCHHHHHHHHHHhhh
Confidence 2366 78777777899999999999998 799999999999999865556666665543
No 21
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=2.2e-32 Score=259.96 Aligned_cols=281 Identities=14% Similarity=0.091 Sum_probs=203.8
Q ss_pred eEEEeeeeecccccChhcc-ccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCC--CCCCCCCccHHHHHHH---HHHH
Q 017756 49 VKTFAPATVANLGPCFDFL-GCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPS--KLSKNPLWNCAGIAAI---SAMK 120 (366)
Q Consensus 49 ~~~~aPaki~nlGe~~dv~-g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~--~~~~~~~~n~i~~a~~---~~~~ 120 (366)
++++||||+.++|||..+. |.... ++..++++++.++ +..++.+...+. ++..+++.+++..+++ .+++
T Consensus 2 i~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 78 (335)
T 3gon_A 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFS---DSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLA 78 (335)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEEC---SSCEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEEC---CCCEEEEeCCCcccccCcCCCcHHHHHHHHHHHHHHH
Confidence 6899999999999998776 65222 2333444444443 233443322221 2222334455544443 3445
Q ss_pred HhCCCCcceEEEEeeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccC--CCcchhhHhhhc
Q 017756 121 MLGVRSVGLSLSLEKGLPLG---SGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG--YHADNIAPAIMG 195 (366)
Q Consensus 121 ~~g~~~~g~~I~i~~~IP~g---aGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g--~~~D~~a~~~~G 195 (366)
..+.+..++++.|.+++|.+ +|||||||+++|++.++++++++++++++++++|..+|..++| +++||++ +.+|
T Consensus 79 ~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~-a~~G 157 (335)
T 3gon_A 79 VRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLAC-IAAE 157 (335)
T ss_dssp HTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHH-HHHT
T ss_pred HcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCCcce-eecC
Confidence 55666679999999999987 6999999999999999999999999999999999999998775 3789876 7999
Q ss_pred CeEEEeecC---------------------CCceEEeeCCCcCceEEEEEcCCCCcchHHHHHhCCcCCChhHHHHHHHH
Q 017756 196 GFVLIRSYE---------------------PLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQ 254 (366)
Q Consensus 196 G~~~~~~~~---------------------~~~~~~l~~~~~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~i~~~~~ 254 (366)
|.+++...+ ...+++++.+ ..+++++++++.+.+|.++.+.+..............+
T Consensus 158 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~t~~~v~~v~~~~~~~~~~~~~~~ 235 (335)
T 3gon_A 158 DLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT--LECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKET 235 (335)
T ss_dssp SCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC--SCCEEEEEECCCCCCHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred CeEEEEeCCccccceeecccchhheecccccceeEEcCCc--cccceEEeecCChhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 998876432 1234555554 67899999999999999998877654432222233456
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccc-c-ccCCCCchHHHHHHHHHHcCCeEEEeccccCce--EEEecCcchHHHHHH
Q 017756 255 AGALVAAVLNGDPVGLGKALSSDKIVE-P-KRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTA--VAVVDNEEKGKVIGE 330 (366)
Q Consensus 255 ~~~~~~al~~~d~~~lg~~l~~~~~~~-~-~~~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~~--~~l~~~~~~a~~v~~ 330 (366)
+.++..+|.++|++.|+++|+.+|... . ....++|+++++++.+++.|+ ++||||+|+|+ ++|+++++.+ +
T Consensus 236 ~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG~Ggc~ial~~~~~~~----~ 310 (335)
T 3gon_A 236 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIALSFDAQST----K 310 (335)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTCSSSEEEEEECSHHHH----H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEccccchheEEEEECCHHHH----H
Confidence 788899999999999999998763222 2 334568999999999999996 89999999874 6777755444 4
Q ss_pred HHHHHHHHcC
Q 017756 331 KMVEAFWKEG 340 (366)
Q Consensus 331 ~l~~~~~~~g 340 (366)
.++++|+++|
T Consensus 311 ~i~~~~~~~G 320 (335)
T 3gon_A 311 TLKNRWADLG 320 (335)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 4566666676
No 22
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.97 E-value=1.6e-30 Score=246.00 Aligned_cols=282 Identities=9% Similarity=0.070 Sum_probs=196.9
Q ss_pred eeEEEeeeeecccccC-----------hhcccccccccCCEEEEEE-cCCCCCCcEEEEeecCCCCCCCCCCccHHHHHH
Q 017756 48 SVKTFAPATVANLGPC-----------FDFLGCAVDGLGDYVSLKV-DPSVHPGEVSISEVIGPSKLSKNPLWNCAGIAA 115 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~-----------~dv~g~~~~~l~~~v~v~~-~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~~a~ 115 (366)
.++++||++|+++|+| +|.+|.++++++++++++. .+.. +.+++. .++. ..+ ..|.|++.+++
T Consensus 8 ~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~~~v~~~~~~~--~~~~~~-~~g~-~~~-~~~~n~v~~~~ 82 (317)
T 2gs8_A 8 VITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTA--TSDQFY-INGI-LQN-DEEHTKISAII 82 (317)
T ss_dssp EEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTC--CSCEEE-ETTE-ECC-HHHHHHHHHHH
T ss_pred cEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccceEEEEEEcCCC--CeEEEE-ECCC-ccc-cchHHHHHHHH
Confidence 5789999999877665 5667777755888888886 4320 123332 2332 122 13678887777
Q ss_pred HHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhccCCCcchhhHhhhc
Q 017756 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMG 195 (366)
Q Consensus 116 ~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~g~~~D~~a~~~~G 195 (366)
+.+.++.+ .+++|+++++||.++|||||||+++|++.|++++++++++.+||+++|...+.+ .+++++|
T Consensus 83 ~~~~~~~~---~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~--------~~~~~~G 151 (317)
T 2gs8_A 83 DQFRQPGQ---AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGS--------SSRSFFG 151 (317)
T ss_dssp TTTCCTTC---CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGG--------GGGGGSC
T ss_pred HHHHHhcC---CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcch--------hHhhhcC
Confidence 66666555 489999999999999999999999999999999999999999999999987643 2457999
Q ss_pred CeEEEeecCCCceEEeeCCCcCceEEEEE--cCC-CCcchHHHHH-hCCcCCChhHHH-HHHHHHHHHHHHHHcCCHHHH
Q 017756 196 GFVLIRSYEPLDLMRLNFPEKKQLLFVLV--TPE-FEAPTKKMRA-ALPAEVGMPHHI-WNCSQAGALVAAVLNGDPVGL 270 (366)
Q Consensus 196 G~~~~~~~~~~~~~~l~~~~~~~~~~vl~--~p~-~~~sT~~~~~-~l~~~~~~~~~i-~~~~~~~~~~~al~~~d~~~l 270 (366)
|++++.. ++......+++ .+++++++ .++ ..++|.+.++ .++......+.. ....++..++.+|.++|++.|
T Consensus 152 G~~~~~~-~~~~~~~~~~~--~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l 228 (317)
T 2gs8_A 152 PVAAWDK-DSGAIYKVETD--LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQSAIDYQHMLTYLKTNNFEKV 228 (317)
T ss_dssp SEEEECT-TTCCEEECCCC--CCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChheEee-CCCceeEEEcc--ccccEEEEEEECCCcCcccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998765 34434444444 35665444 342 2455544443 333332232322 234567889999999999999
Q ss_pred HHHHhcC--cccc------cccCCCCchHHHHHH---HHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHc
Q 017756 271 GKALSSD--KIVE------PKRAPLIPGMEAVKK---VAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKE 339 (366)
Q Consensus 271 g~~l~~~--~~~~------~~~~~~~p~l~~l~~---~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~ 339 (366)
+++|+++ .+++ +.+....|.+.++++ .+++.|+.++.||||||++|+|+++ +.++++.+.+++
T Consensus 229 g~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaGptv~~l~~~-~~~~~v~~~l~~----- 302 (317)
T 2gs8_A 229 GQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAGPNVKVLCLE-KDLAQLAERLGK----- 302 (317)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSCEEEEEEG-GGHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCCCeEEEEEcH-HHHHHHHHHHhc-----
Confidence 9999754 3344 233334566777765 4455898899999999999999974 456667666655
Q ss_pred CCCceEEEEeeeCCCceEE
Q 017756 340 GNLKAVSMVKRLDRVGARL 358 (366)
Q Consensus 340 g~~~~~~~~~~~~~~Ga~i 358 (366)
..+++++++ .+|+++
T Consensus 303 ---~~~~~~~~~-~~~~~~ 317 (317)
T 2gs8_A 303 ---NYRIIVSKT-KDLPDV 317 (317)
T ss_dssp ---TSEEEEEEB-CCCCCC
T ss_pred ---CCeEEEEec-CCCCCC
Confidence 268999998 688864
No 23
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.97 E-value=2e-30 Score=257.79 Aligned_cols=304 Identities=16% Similarity=0.212 Sum_probs=216.6
Q ss_pred eeEEEeeeeecccccChhccccccc--c--cCCEEEEEEcCCCCCCcEEEEeecCC--C---CC-------C----CCCC
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD--G--LGDYVSLKVDPSVHPGEVSISEVIGP--S---KL-------S----KNPL 107 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~--~--l~~~v~v~~~~~~~~~~i~i~~~~g~--~---~~-------~----~~~~ 107 (366)
...++|||||+++|||+|+.|..+. + .+.++.++.+.+ +++.+++.+.+.. . ++ . ...|
T Consensus 39 ~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~-~d~~i~i~S~~~~~~~~~~~l~~~~~~~~i~~~~~~W 117 (520)
T 3v2u_C 39 DFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDE-KNPSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEW 117 (520)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCC-SSCEEEEEESSTTSCCEEEECCTTCCCCCCCTTSCCH
T ss_pred CEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccC-CCCEEEEEECCCCCCceEEEeccCccccccCcccccH
Confidence 3679999999999999999888554 2 444455554411 1256777543211 0 11 1 1247
Q ss_pred ccHHHHHHH---HHHHHh------CCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 017756 108 WNCAGIAAI---SAMKML------GVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMF---GNKLLPDELVIAGL 175 (366)
Q Consensus 108 ~n~i~~a~~---~~~~~~------g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~---~~~ls~~eL~~la~ 175 (366)
.||+.-+++ .+++.. |.+..|+++.+.++||.|+|| |||+.+|++.|+++++ ++++++.+|+++|+
T Consensus 118 ~~Yv~g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~ 195 (520)
T 3v2u_C 118 SNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITA 195 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 899854432 233321 334479999999999999999 9999999999999998 78899999999999
Q ss_pred HhhhhccC---CCcchhhHhhhcC---eEEEeecCC-CceEEeeCCC--cCceEEEEEcCCC---CcchH----------
Q 017756 176 ESEAKVSG---YHADNIAPAIMGG---FVLIRSYEP-LDLMRLNFPE--KKQLLFVLVTPEF---EAPTK---------- 233 (366)
Q Consensus 176 ~~e~~v~g---~~~D~~a~~~~GG---~~~~~~~~~-~~~~~l~~~~--~~~~~~vl~~p~~---~~sT~---------- 233 (366)
.+|. +.| ++|||++ +++|+ ..+++.. + ..++++++|. .+++.++|+++++ +..|.
T Consensus 196 ~aE~-~vG~~~G~mDQ~a-s~~G~~g~~l~id~~-~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~e 272 (520)
T 3v2u_C 196 VAEH-YVGVNNGGMDQAT-SVYGEEDHALYVEFR-PKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIE 272 (520)
T ss_dssp TGGG-GGTCCCCSHHHHH-HHHCBTTBEEEEECS-SSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHH
T ss_pred HHHH-HhCCCCchhhHHH-HHhCCCCeEEEEEcC-CCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHH
Confidence 9997 444 5899997 78886 5555544 4 6788888872 1278999999987 33221
Q ss_pred --HHHH----hC--C--------------------------------------------------------c--------
Q 017756 234 --KMRA----AL--P--------------------------------------------------------A-------- 241 (366)
Q Consensus 234 --~~~~----~l--~--------------------------------------------------------~-------- 241 (366)
.+-+ .+ + +
T Consensus 273 Ce~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~ 352 (520)
T 3v2u_C 273 VTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVH 352 (520)
T ss_dssp HHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHH
T ss_pred HHHHHHHHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHH
Confidence 0100 00 0 0
Q ss_pred -----------------------------CCChhHH-HHHHHHHHHHHHHHHcC-------CHHHHHHHHhcCccccccc
Q 017756 242 -----------------------------EVGMPHH-IWNCSQAGALVAAVLNG-------DPVGLGKALSSDKIVEPKR 284 (366)
Q Consensus 242 -----------------------------~~~~~~~-i~~~~~~~~~~~al~~~-------d~~~lg~~l~~~~~~~~~~ 284 (366)
...|..| +.+.+++.++..+|.++ |++.||++|+.+ |+.++
T Consensus 353 e~~~~l~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~s--H~slr 430 (520)
T 3v2u_C 353 EASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNES--QASCD 430 (520)
T ss_dssp HHHHHTTSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHhhcCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHH--HHHHH
Confidence 0012234 35677888899999997 599999999887 55555
Q ss_pred ---CCCCchHHHHHHHHHHcCCeEEEeccccCc--eEEEec--CcchHHHHHHHHHHHHHHcCCC-------ceEEEEee
Q 017756 285 ---APLIPGMEAVKKVAVEAGAYGCTISGAGPT--AVAVVD--NEEKGKVIGEKMVEAFWKEGNL-------KAVSMVKR 350 (366)
Q Consensus 285 ---~~~~p~l~~l~~~~~~~Ga~ga~mSGsG~~--~~~l~~--~~~~a~~v~~~l~~~~~~~g~~-------~~~~~~~~ 350 (366)
..++|+++.+++.+++.|++|++|||+|+| +++|++ +++.++++.+.|++.|.+.+.. +..+++++
T Consensus 431 ~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 510 (520)
T 3v2u_C 431 KLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSK 510 (520)
T ss_dssp HTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECC
T ss_pred HhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEec
Confidence 356899999999999999999999999965 567783 3678999999998887765422 24588888
Q ss_pred eCCCceEEEc
Q 017756 351 LDRVGARLVG 360 (366)
Q Consensus 351 ~~~~Ga~i~~ 360 (366)
+ ..|+.|..
T Consensus 511 p-~~GA~i~~ 519 (520)
T 3v2u_C 511 P-ALGTCLYE 519 (520)
T ss_dssp C-CCCSEEEE
T ss_pred C-CCceEEee
Confidence 8 69998764
No 24
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.97 E-value=8.5e-29 Score=239.49 Aligned_cols=271 Identities=14% Similarity=0.119 Sum_probs=187.6
Q ss_pred cceeEEEeeeeecccccChh-ccccccc----------------c---cCCEEEEEEcCCCCCCcEEEEeecCCCCCCCC
Q 017756 46 FTSVKTFAPATVANLGPCFD-FLGCAVD----------------G---LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKN 105 (366)
Q Consensus 46 ~~~~~~~aPaki~nlGe~~d-v~g~~~~----------------~---l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~ 105 (366)
|+..+++++|++ ||+ ++ |.|++-| + +|++++|+..+....+.+.+ +|+ ..+.
T Consensus 1 ~~~~~~~a~A~~-Nia--l~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i---~g~-~~~~- 72 (380)
T 2hke_A 1 MSDQCVTVEAPI-NIA--FIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRL---NGT-EVDV- 72 (380)
T ss_dssp ---CEEEEEECC-EEE--EECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEE---TTE-EECG-
T ss_pred CCCccEEEEcCc-cch--hhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEE---CCc-ccCc-
Confidence 455678899999 998 66 5677653 3 66777776543100123332 332 1111
Q ss_pred CCccHHHHHHHHHHHHhCC---CCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhcc
Q 017756 106 PLWNCAGIAAISAMKMLGV---RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVS 182 (366)
Q Consensus 106 ~~~n~i~~a~~~~~~~~g~---~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v~ 182 (366)
..+|++.++++.+.+.++. . .+++|+++++||.++|||||||+++|++.|++++++++ ++|.++|...+.+
T Consensus 73 ~~~~~v~~~~~~~~~~~~~~~~~-~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gs-- 146 (380)
T 2hke_A 73 GKTPRVQSMLLHLRSTCPEELKN-KKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGS-- 146 (380)
T ss_dssp GGCHHHHHHHHHHHTSSCHHHHT-CEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGG--
T ss_pred hhHHHHHHHHHHHHHHhcccCCC-CCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcc--
Confidence 1468888888888777675 3 58999999999999999999999999999999999987 8899999877643
Q ss_pred CCCcchhhHhhhcCeEEEeec---CC--CceEEeeCC-CcCceEEEEEcCC---CCc-chHHHHHhCCcCCChhHHHH--
Q 017756 183 GYHADNIAPAIMGGFVLIRSY---EP--LDLMRLNFP-EKKQLLFVLVTPE---FEA-PTKKMRAALPAEVGMPHHIW-- 250 (366)
Q Consensus 183 g~~~D~~a~~~~GG~~~~~~~---~~--~~~~~l~~~-~~~~~~~vl~~p~---~~~-sT~~~~~~l~~~~~~~~~i~-- 250 (366)
++++++||++++... ++ ....+++.+ .+++++++++.++ ..+ +|..+++.++....+.+.+.
T Consensus 147 ------va~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~ 220 (380)
T 2hke_A 147 ------ACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISET 220 (380)
T ss_dssp ------GGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTH
T ss_pred ------eeeehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHH
Confidence 456899999885421 11 235666542 1246775555432 234 45555554443333334443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhc--Ccccc------cccCCCCchHHHHHHHHHHc----C-CeEEEeccccCceEE
Q 017756 251 NCSQAGALVAAVLNGDPVGLGKALSS--DKIVE------PKRAPLIPGMEAVKKVAVEA----G-AYGCTISGAGPTAVA 317 (366)
Q Consensus 251 ~~~~~~~~~~al~~~d~~~lg~~l~~--~~~~~------~~~~~~~p~l~~l~~~~~~~----G-a~ga~mSGsG~~~~~ 317 (366)
...++..++.+|.++|++.|++++.. +.+|+ +++....|...++++.+++. | +.++.||||||++|+
T Consensus 221 ~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGPtv~~ 300 (380)
T 2hke_A 221 VPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFL 300 (380)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCCcEEE
Confidence 34567889999999999999998864 24453 45555678888888776544 8 778999999999999
Q ss_pred EecCcchHHHHHHHHHHHHH
Q 017756 318 VVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 318 l~~~~~~a~~v~~~l~~~~~ 337 (366)
|+++ ++++++.+.+++.|.
T Consensus 301 l~~~-~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 301 FVLK-EDLPEAVAMLMEHFP 319 (380)
T ss_dssp EEEG-GGHHHHHHHHHHHSC
T ss_pred EECH-HHHHHHHHHHHHhcc
Confidence 9974 467888888888765
No 25
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.97 E-value=1.1e-28 Score=240.99 Aligned_cols=277 Identities=15% Similarity=0.120 Sum_probs=195.4
Q ss_pred cceeEEEeeeeecccc-----------cChhccccccc--ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccHHH
Q 017756 46 FTSVKTFAPATVANLG-----------PCFDFLGCAVD--GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNCAG 112 (366)
Q Consensus 46 ~~~~~~~aPaki~nlG-----------e~~dv~g~~~~--~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~i~ 112 (366)
|.+++++||++|++++ +.+|.+|.+++ .+|++++|+..+.. +.+++. .+|. ..+. ..|++.
T Consensus 23 ~~~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~--~~~~i~-i~G~-~~~~--~~~~v~ 96 (416)
T 1fi4_A 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEF--ERDTLW-LNGE-PHSI--DNERTQ 96 (416)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTC--CSCBCT-TTCC-BSSS--SSSSHH
T ss_pred ceEEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCCC--CccEEE-ECCc-cccc--cchHHH
Confidence 4568999999998885 34677888886 58999999875421 122221 2332 2222 368898
Q ss_pred HHHHHHHHHhCC--------C---CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 113 IAAISAMKMLGV--------R---SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 113 ~a~~~~~~~~g~--------~---~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
++++.+++.++. + ..+++|+++++||.++|||||||+++|++.|++++++++++.+||+++|...+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs- 175 (416)
T 1fi4_A 97 NCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGS- 175 (416)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCc-
Confidence 888888887654 0 2589999999999999999999999999999999999999999999999887643
Q ss_pred cCCCcchhhHhhhcCeEEEe-ec--CC--CceEEeeCC-CcCceEEEEEcCCC---Ccch-HHHHHhCCcCCChhHHHH-
Q 017756 182 SGYHADNIAPAIMGGFVLIR-SY--EP--LDLMRLNFP-EKKQLLFVLVTPEF---EAPT-KKMRAALPAEVGMPHHIW- 250 (366)
Q Consensus 182 ~g~~~D~~a~~~~GG~~~~~-~~--~~--~~~~~l~~~-~~~~~~~vl~~p~~---~~sT-~~~~~~l~~~~~~~~~i~- 250 (366)
++++++||++++. +. ++ ....+++.. .+++++++++.|+. .++| ..+.+.++....+.+.+.
T Consensus 176 -------~~~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~~~ 248 (416)
T 1fi4_A 176 -------ACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEH 248 (416)
T ss_dssp -------GGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHT
T ss_pred -------hheEeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHHHH
Confidence 3468999998864 21 11 234566532 12477754444332 3444 444443333322333343
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHhcC--cccc------cccCCCCchHHHHHHHHHH----cC-CeEEEeccccCceE
Q 017756 251 -NCSQAGALVAAVLNGDPVGLGKALSSD--KIVE------PKRAPLIPGMEAVKKVAVE----AG-AYGCTISGAGPTAV 316 (366)
Q Consensus 251 -~~~~~~~~~~al~~~d~~~lg~~l~~~--~~~~------~~~~~~~p~l~~l~~~~~~----~G-a~ga~mSGsG~~~~ 316 (366)
...++..++.||.++|++.|++++..+ .+|+ +++....|...++++.+.+ .| +.++.||||||++|
T Consensus 249 i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaGPtv~ 328 (416)
T 1fi4_A 249 VVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAV 328 (416)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEE
Confidence 245678899999999999999998643 3444 4444456788888766544 38 67888999999999
Q ss_pred EEecCcchHHHHHHHHHHHHH
Q 017756 317 AVVDNEEKGKVIGEKMVEAFW 337 (366)
Q Consensus 317 ~l~~~~~~a~~v~~~l~~~~~ 337 (366)
+|+++ +.++++.+.+++.|.
T Consensus 329 al~~~-~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLA-ENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEG-GGHHHHHHHHHHHHT
T ss_pred EEECH-HHHHHHHHHHHHhcc
Confidence 99974 467888888888776
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.95 E-value=4.1e-26 Score=214.21 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=161.0
Q ss_pred HHHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhhhhccCCCcc
Q 017756 113 IAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAA----VAVNEMFGNKL-LPDELVIAGLESEAKVSGYHAD 187 (366)
Q Consensus 113 ~a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l----~al~~l~~~~l-s~~eL~~la~~~e~~v~g~~~D 187 (366)
+.+..++++++.+ .+++|+++++||.++|||||||++||++ .|+|+++++++ +++||.++|..++.
T Consensus 78 ~~i~~~l~~~~~~-~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsG-------- 148 (323)
T 3lto_A 78 DHLVRLKEYFGYV-GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSG-------- 148 (323)
T ss_dssp HHHHHHHHHHTCC-CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCG--------
T ss_pred HHHHHHHHHhCCC-CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC--------
Confidence 5567888888874 6999999999999999999999999999 99999999999 99999999977654
Q ss_pred hhhHhhhcCeEEEeecCCCceEEeeCCCcCceEEE-EEcCC--CCcchHHHHHhCCcCCChhHHHH-HHHHHHHHHHHHH
Q 017756 188 NIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFV-LVTPE--FEAPTKKMRAALPAEVGMPHHIW-NCSQAGALVAAVL 263 (366)
Q Consensus 188 ~~a~~~~GG~~~~~~~~~~~~~~l~~~~~~~~~~v-l~~p~--~~~sT~~~~~~l~~~~~~~~~i~-~~~~~~~~~~al~ 263 (366)
++++|++||++++.. + ..+++..+ ++++.++ ++.|+ .++||.++++.++......+.+. ...++..++.+|.
T Consensus 149 saa~si~GG~v~~~~--g-~~~~l~~~-~~~l~~~v~vi~~~~~~vsT~~~~~~l~~~~~~~~~~~~~~~~~~~l~~AL~ 224 (323)
T 3lto_A 149 SSCRSFYAPWALWTG--D-KVSAIDLP-YKDLLHQVIVISSQEKEIPSRVAHKLVKTSPFYETRSERAEANLKLLLNAFE 224 (323)
T ss_dssp GGGGGGSCSEEEEET--T-EEEECCCS-CCSCEEEEEECCCCTTCCCHHHHHHHGGGSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhCCEEEEec--C-cEEEccCC-CCCCeEEEEEECCCCCCCCCHHHHhhcccChhHHHHHHHhHHHHHHHHHHHH
Confidence 346789999997543 2 23344211 1456553 33344 45899999988644322223332 3457888999999
Q ss_pred cCCHHHHHHHHhcC--cccc------cccCCCCchHHHHHHHHHH----cCCeEEEeccccCceEEEecCcchHHHHHHH
Q 017756 264 NGDPVGLGKALSSD--KIVE------PKRAPLIPGMEAVKKVAVE----AGAYGCTISGAGPTAVAVVDNEEKGKVIGEK 331 (366)
Q Consensus 264 ~~d~~~lg~~l~~~--~~~~------~~~~~~~p~l~~l~~~~~~----~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~ 331 (366)
++|++.+++++..| .+|+ +++....|+..++++.+++ .|+.++.+||+||++++|+. +++.+++.+.
T Consensus 225 ~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGPnv~~l~~-~~~~~~v~~~ 303 (323)
T 3lto_A 225 NKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGPNVHLLYR-SDQTDLARQF 303 (323)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSSCEEEEEC-GGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCCCeEEEEe-cccHHHHHHH
Confidence 99999999976655 4565 4555567887777766654 68999999999999999997 5678889999
Q ss_pred HHHHHHH
Q 017756 332 MVEAFWK 338 (366)
Q Consensus 332 l~~~~~~ 338 (366)
|++.+..
T Consensus 304 l~~~~~~ 310 (323)
T 3lto_A 304 KSDHLVG 310 (323)
T ss_dssp HHHHTTT
T ss_pred HHHHhHh
Confidence 8877654
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.92 E-value=5.4e-24 Score=204.00 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=189.2
Q ss_pred eeEEEeeeeecccccChhccccccc-----------------ccCCEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCccH
Q 017756 48 SVKTFAPATVANLGPCFDFLGCAVD-----------------GLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPLWNC 110 (366)
Q Consensus 48 ~~~~~aPaki~nlGe~~dv~g~~~~-----------------~l~~~v~v~~~~~~~~~~i~i~~~~g~~~~~~~~~~n~ 110 (366)
.++++||.-|+++ .|.|++-. .++.+.+|+.+++...+.+.+ +|.. ... ....
T Consensus 23 ~~t~~A~~NIAlI----KYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~L---NG~~-~~~--~~~r 92 (414)
T 3f0n_A 23 MVTCTAPVNIAVI----KYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL---NGRE-EDV--GQPR 92 (414)
T ss_dssp EEEEEECCEEEEE----CCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEE---TTEE-ECT--TCHH
T ss_pred eEEEEecccchhh----hhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEE---CCEe-cCc--ccHH
Confidence 5788899888655 66666533 245556666555322234433 3321 111 2456
Q ss_pred HHHHHHHHHHHhCCC-------------CcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 017756 111 AGIAAISAMKMLGVR-------------SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLES 177 (366)
Q Consensus 111 i~~a~~~~~~~~g~~-------------~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~ 177 (366)
+.+.++.+++.++.. ..+++|+++++||.++|||||||.+||++.|+++++++ .++|.++|..+
T Consensus 93 i~~~l~~iR~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~ 169 (414)
T 3f0n_A 93 LQACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRG 169 (414)
T ss_dssp HHHHHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHh
Confidence 777888888776542 14799999999999999999999999999999999998 46888888877
Q ss_pred hhhccCCCcchhhHhhhcCeEEEeec---CCC--ceEEeeCC-CcCceEEEEEcC-CCC---cchHHHHHhCCcCCChhH
Q 017756 178 EAKVSGYHADNIAPAIMGGFVLIRSY---EPL--DLMRLNFP-EKKQLLFVLVTP-EFE---APTKKMRAALPAEVGMPH 247 (366)
Q Consensus 178 e~~v~g~~~D~~a~~~~GG~~~~~~~---~~~--~~~~l~~~-~~~~~~~vl~~p-~~~---~sT~~~~~~l~~~~~~~~ 247 (366)
+.+ ++++++||++++... ++. ...+++.+ .++++.++++.+ ... .||+.+++.++....+.+
T Consensus 170 sGs--------~~~s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~ 241 (414)
T 3f0n_A 170 SGS--------ACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKF 241 (414)
T ss_dssp CGG--------GGGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHH
T ss_pred CCC--------cchHhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHH
Confidence 654 356899999987432 122 23556531 125788777764 332 267777766654433444
Q ss_pred HHH--HHHHHHHHHHHHHcCCHHHHHHHHhcC--ccccccc------CCCCchHHHHHHHHHHc-----CCeEEEecccc
Q 017756 248 HIW--NCSQAGALVAAVLNGDPVGLGKALSSD--KIVEPKR------APLIPGMEAVKKVAVEA-----GAYGCTISGAG 312 (366)
Q Consensus 248 ~i~--~~~~~~~~~~al~~~d~~~lg~~l~~~--~~~~~~~------~~~~p~l~~l~~~~~~~-----Ga~ga~mSGsG 312 (366)
.+. ...++..++.||.++|++.|++++..| .+|+.++ ....|+..++++.+++. |+.++.++|+|
T Consensus 242 ~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG 321 (414)
T 3f0n_A 242 RAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG 321 (414)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 454 356788999999999999999987656 5776443 34678877777776653 78899999999
Q ss_pred CceEEEecCcchHHHHHHHHHHHHHH
Q 017756 313 PTAVAVVDNEEKGKVIGEKMVEAFWK 338 (366)
Q Consensus 313 ~~~~~l~~~~~~a~~v~~~l~~~~~~ 338 (366)
|++++|+. +++.+++.+.|++.|..
T Consensus 322 Pnv~vl~~-~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 322 PNAVIFTL-EDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SCEEEEEE-HHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEe-cccHHHHHHHHHHhcCC
Confidence 99999997 56888999998877664
No 28
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=39.20 E-value=98 Score=21.71 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCeEEEeccccCceEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeeeCCCceEEEc
Q 017756 291 MEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 360 (366)
Q Consensus 291 l~~l~~~~~~~Ga~ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~~~~Ga~i~~ 360 (366)
+.++.+..++.|+.-+++|=. ...+..+++++..|.+.|.+.| +.-+.+.+|.+-+.++.
T Consensus 33 lnelmdyikkqgakrvrisit-------artkkeaekfaailikvfaelg---yndinvtfdgdtvtveg 92 (106)
T 1qys_A 33 LNELMDYIKKQGAKRVRISIT-------ARTKKEAEKFAAILIKVFAELG---YNDINVTFDGDTVTVEG 92 (106)
T ss_dssp HHHHHHHHHHHCCSEEEEEEE-------CSSHHHHHHHHHHHHHHHHHTT---CCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEEE-------ecchhHHHHHHHHHHHHHHHhC---CcceeEEEcCCeEEEEe
Confidence 566677778889888877622 2345678999999999999877 45555667666666653
No 29
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.05 E-value=35 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=23.8
Q ss_pred EEEeccccCceEEEecCcchHHHHHHHHHHHHHHc
Q 017756 305 GCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKE 339 (366)
Q Consensus 305 ga~mSGsG~~~~~l~~~~~~a~~v~~~l~~~~~~~ 339 (366)
-..+.|||+|+..+...-++.+.+.++|++...+.
T Consensus 74 ~y~imgsgsgvm~i~f~gddlea~ekalkemirqa 108 (170)
T 4hhu_A 74 QYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQA 108 (170)
T ss_dssp EEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 45788999998766544566777777776655443
No 30
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=25.07 E-value=1.2e+02 Score=26.39 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 118 AMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 118 ~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
.....|++..++-.++...+| .-..+++++.++++++|+.++..+|.+.|.+.+..+
T Consensus 174 ~~~~~gi~a~~l~~~vp~y~p-------dP~AA~~lL~~l~~~~gl~i~~~~L~e~Ae~~e~~i 230 (252)
T 3gaa_A 174 ECLVRKITGLSFITPTSVDIP-------DPGAVLSIIEAINKAYNLKIKTDLLEEQVKALDEQI 230 (252)
T ss_dssp HHHHHTCEEEEEEEEEESSSC-------CHHHHHHHHHHHHHHHCCCCCCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEEeCCCCCC-------CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 344557754455556655554 466788899999999999999888888888877643
No 31
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=23.81 E-value=2.3e+02 Score=21.12 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHcCCeEE---EeccccCc---------------------eEEEecCcchHHHHHHHHHHHHHHcCCCceE
Q 017756 290 GMEAVKKVAVEAGAYGC---TISGAGPT---------------------AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAV 345 (366)
Q Consensus 290 ~l~~l~~~~~~~Ga~ga---~mSGsG~~---------------------~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~ 345 (366)
.++++++.+.+.|+.|. ...|.|-. +..+++ .+..+++.+.+.+.......=++.
T Consensus 12 ~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~-de~v~~vv~~I~~~~~tg~~GdGk 90 (116)
T 1vfj_A 12 KLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVS-EPFVKPTVEAILKAARTGEVGDGK 90 (116)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEEC-GGGHHHHHHHHHHHHCCSSTTCCE
T ss_pred HHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEc-HHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57888888988876543 33355531 234455 568999999998865421101467
Q ss_pred EEEeeeC
Q 017756 346 SMVKRLD 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
++++.++
T Consensus 91 iFV~pVe 97 (116)
T 1vfj_A 91 IFVLPVE 97 (116)
T ss_dssp EEEEECS
T ss_pred EEEEEhH
Confidence 8887764
No 32
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=23.11 E-value=92 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017756 142 GLGSSAASAAAAAVAVNEMFGNKLLPDELVI 172 (366)
Q Consensus 142 GLGSSSA~aaA~l~al~~l~~~~ls~~eL~~ 172 (366)
-||+.|-.++-+...+.+.+|..++..++++
T Consensus 42 ~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~ 72 (93)
T 4i4d_A 42 ALGGNSIHAIXITNRVEELVDAELSIRVLLE 72 (93)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHhCCCCCHHHHHc
Confidence 5899999999999999999999999888875
No 33
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=22.36 E-value=2.5e+02 Score=25.38 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCcceEEEEeeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhc
Q 017756 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV 181 (366)
Q Consensus 114 a~~~~~~~~g~~~~g~~I~i~~~IP~gaGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~la~~~e~~v 181 (366)
.+...+...|++..++-.++..-+ +-.---..+++++.++++++|+.++..+|.+.|.+.+..+
T Consensus 182 lL~~~~~~~Gi~a~~l~~~vphYl----~~~pdP~AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i 245 (319)
T 2p90_A 182 MLEKLLKDKGKNVSGYTVHVPHYV----SASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQL 245 (319)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEGGG----TTSCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEecCccc----CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 344555666775334444444111 1122456788889999999999999999998888777644
No 34
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=21.46 E-value=2.5e+02 Score=20.73 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCCeEEE---eccccCc---------------------eEEEecCcchHHHHHHHHHHHHHH--cCCCc
Q 017756 290 GMEAVKKVAVEAGAYGCT---ISGAGPT---------------------AVAVVDNEEKGKVIGEKMVEAFWK--EGNLK 343 (366)
Q Consensus 290 ~l~~l~~~~~~~Ga~ga~---mSGsG~~---------------------~~~l~~~~~~a~~v~~~l~~~~~~--~g~~~ 343 (366)
.++++++.+.+.|+.|.. ..|.|-. +..+++ .+.++++.+.+.+.... .| +
T Consensus 12 ~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~-d~~v~~vv~~I~~~~~tg~~G--d 88 (112)
T 2eg2_A 12 KLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVR-DEDVEKVVETIVKTAQTGRVG--D 88 (112)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEEC-GGGHHHHHHHHHHHHCCSSTT--C
T ss_pred HHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEc-HHHHHHHHHHHHHHhcCCCCC--C
Confidence 578888888888765433 3344431 123333 57889999999887643 22 4
Q ss_pred eEEEEeeeC
Q 017756 344 AVSMVKRLD 352 (366)
Q Consensus 344 ~~~~~~~~~ 352 (366)
+.++++.++
T Consensus 89 GkiFV~pVe 97 (112)
T 2eg2_A 89 GKIFIIPVE 97 (112)
T ss_dssp CEEEEEECS
T ss_pred EEEEEEEhH
Confidence 688888774
No 35
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=20.64 E-value=81 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017756 141 SGLGSSAASAAAAAVAVNEMFGNKLLPDELVI 172 (366)
Q Consensus 141 aGLGSSSA~aaA~l~al~~l~~~~ls~~eL~~ 172 (366)
.-||+.|-.++-+...+.+.+|..++..++++
T Consensus 39 f~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~ 70 (91)
T 1dny_A 39 FQIGGHSLKAMAVAAQVHREYQVELPLKVLFA 70 (91)
T ss_dssp TSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHc
Confidence 36889999999999999999999999888765
No 36
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=20.03 E-value=2.7e+02 Score=21.11 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHcCCeEE---EeccccCc------------eEEEecCcchHHHHHHHHHHHHHHcCCCceEEEEeee
Q 017756 289 PGMEAVKKVAVEAGAYGC---TISGAGPT------------AVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRL 351 (366)
Q Consensus 289 p~l~~l~~~~~~~Ga~ga---~mSGsG~~------------~~~l~~~~~~a~~v~~~l~~~~~~~g~~~~~~~~~~~ 351 (366)
+.++++++.+++.|+-|. ...|-|.. .+-++.+++.++++.+.+.+.... |. .+.+++..+
T Consensus 35 ~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t-g~-~GkIFV~~V 110 (119)
T 2cz4_A 35 LLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP-HY-AVIAYVENV 110 (119)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT-TS-CCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC-CC-CEEEEEEEe
Confidence 568999999999876543 44466652 122223457888999888854432 21 266777665
Done!