RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017756
(366 letters)
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 584 bits (1507), Expect = 0.0
Identities = 265/367 (72%), Positives = 302/367 (82%), Gaps = 5/367 (1%)
Query: 1 MAICFSSAVKPANHF----TVFFNPAPKKPIFKCSCSLPTVTTTEPEPVFTSVKTFAPAT 56
AICF S KP + ++ + + C++ EPEPVFTSVK FAPAT
Sbjct: 2 AAICFQSPSKPISSSPSTSKTSPPLFARRSVRRVRCNVSLTGKVEPEPVFTSVKAFAPAT 61
Query: 57 VANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPS-KLSKNPLWNCAGIAA 115
VANLGP FDFLGCAVDGLGD+V+ +VDP V PGEVSISE+ G + +LSK+PL NCAGIAA
Sbjct: 62 VANLGPGFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIAA 121
Query: 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGL 175
I+ MK+LG+RSVGLSLSL KGLPLGSGLGSSAASAAAAAVAVNE+FG+ L D+LV+AGL
Sbjct: 122 IATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGL 181
Query: 176 ESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKM 235
ESEAKVSGYHADNIAPA+MGGFVLIRSYEPL L+ L FP K L FVLV+P+FEAPTKKM
Sbjct: 182 ESEAKVSGYHADNIAPALMGGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKKM 241
Query: 236 RAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVK 295
RAALP E+ M HH+WNCSQA ALVAA+L GD V LG+ALSSDKIVEP RAPLIPGMEAVK
Sbjct: 242 RAALPKEIPMKHHVWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPTRAPLIPGMEAVK 301
Query: 296 KVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVG 355
K A+EAGAYGCTISGAGPTAVAV+D+EEKG+ +GE+MVEAF K GNLKA + VK+LDRVG
Sbjct: 302 KAALEAGAYGCTISGAGPTAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVG 361
Query: 356 ARLVGSV 362
ARLV SV
Sbjct: 362 ARLVESV 368
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 262 bits (672), Expect = 3e-86
Identities = 121/312 (38%), Positives = 165/312 (52%), Gaps = 13/312 (4%)
Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
VK PAT ANLGP FD LG A+ L D V + SV G KL +P
Sbjct: 3 MVKVRVPATSANLGPGFDSLGLALS-LYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPE 61
Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
N AA+ ++ LG GL + LEK +PLG GLGSSAAS A VA NE+ G L
Sbjct: 62 KNLVYQAALKFLEKLGKP-PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSK 120
Query: 168 DELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPE 227
+EL+ E E H DN+APA++GG VL + +++ L +V+ P
Sbjct: 121 EELLQLATEGEG-----HPDNVAPALLGGLVLALEENGVISVKIPVF--DDLKWVVAIPN 173
Query: 228 FEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPL 287
E T + RA LP + + ++N S+A LVAA+ GD G+A+ D + EP RA L
Sbjct: 174 IELSTAEARAVLPKQYSLKDAVFNSSRAALLVAALYTGDYELAGRAMK-DVLHEPYRAKL 232
Query: 288 IPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSM 347
IPG V++ A+EAGA G ISGAGPT A+ D +E + + + + +AF ++
Sbjct: 233 IPGFAEVRQAALEAGALGAGISGAGPTVFALCD-KEDAEKVADALQKAF--LQGIEGFVH 289
Query: 348 VKRLDRVGARLV 359
V RLD GAR++
Sbjct: 290 VLRLDTAGARVL 301
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 242 bits (621), Expect = 2e-78
Identities = 123/314 (39%), Positives = 169/314 (53%), Gaps = 17/314 (5%)
Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
+K PA+ ANLGP FD LG A+D D V ++V E G K+ +P
Sbjct: 3 MMKVRVPASSANLGPGFDVLGLALDLYNDVVVVEVVDKFE----IEVEGEGADKIPLDPE 58
Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
N AA+ ++ LG+ G+ + +EKG+PLG GLGSSAAS AA A NE+ G L
Sbjct: 59 -NLVYQAALKFLEALGIE-AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSK 116
Query: 168 DELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPE 227
+EL+ LE E H DN+APA++GG VL+ + +++ FP L V+V P
Sbjct: 117 EELLQLALEIEG-----HPDNVAPAVLGGLVLVEEESGIISVKVPFP--SDLKLVVVIPN 169
Query: 228 FEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPL 287
FE T + R LP ++N S+A LVAA+L GDP L +A+ D I EP RA L
Sbjct: 170 FEVSTAEARKVLPKSYSRKDAVFNLSRAALLVAALLEGDPE-LLRAMMKDVIHEPYRAKL 228
Query: 288 IPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSM 347
+PG V++ A+EAGA G T+SGAGPT A+ D + K ++E E +K
Sbjct: 229 VPGYAEVREAALEAGALGATLSGAGPTVFALADESDAEKA--AALLEE-LYEQGIKGRVH 285
Query: 348 VKRLDRVGARLVGS 361
+ LD GAR+V
Sbjct: 286 ILALDSDGARVVER 299
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 191 bits (487), Expect = 2e-58
Identities = 112/312 (35%), Positives = 157/312 (50%), Gaps = 11/312 (3%)
Query: 49 VKTFAPATVANLGPCFDFLGCAVDG-LGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
+ PA+ ANLGP FD LG A+ LG V+ V E+ +E G K+ P
Sbjct: 1 FRVKVPASSANLGPGFDVLGAALSLYLGLTVTDVVAQESDDTEI-EAEGEGVEKIPTEPT 59
Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
N A + LG+R + ++LEK +PLG GLGSSAA+ AA A NE+ G L
Sbjct: 60 DNLIYQVAKRFLDQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSK 119
Query: 168 DELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPE 227
+ L+ E E H DN+APA++GGF L + + L P +L +VL P
Sbjct: 120 ERLLDYASELEG-----HPDNVAPALLGGFQLAFVEDDKLEV-LKIPIFSKLDWVLAIPN 173
Query: 228 FEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPL 287
E T + RA LP ++N S LV A+ P LG + D+I +P R L
Sbjct: 174 IEVSTAEARAVLPKAYPRQDLVFNLSHLAGLVHAIYQKKPD-LGAIMMKDRIHQPYRESL 232
Query: 288 IPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSM 347
IP + +K+ A+E GAYG TISG+GPT +A+ D EE + + ++E K+G +
Sbjct: 233 IPNLFKIKQAALEKGAYGITISGSGPTILAMAD-EEFAEQKEQDLLEVLHKQGI-EGTVH 290
Query: 348 VKRLDRVGARLV 359
V D GAR+
Sbjct: 291 VLDFDNDGARVE 302
>gnl|CDD|140320 PTZ00299, PTZ00299, homoserine kinase; Provisional.
Length = 336
Score = 88.8 bits (220), Expect = 9e-20
Identities = 94/298 (31%), Positives = 137/298 (45%), Gaps = 27/298 (9%)
Query: 54 PATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSIS-EVIGPSKLSKNPLWNCAG 112
PAT AN+GP +D LG A L ++ L V+ H S++ E G +S + N
Sbjct: 13 PATTANIGPAYDTLGMA---LSIFMELTVE---HADAFSMTVEGEGSEHISTDED-NMVV 65
Query: 113 IAAISAMKMLGVRSV-GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELV 171
A A + +S+ L + +P G G GSS+A+A A VA ++ G + +
Sbjct: 66 QACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEE 125
Query: 172 IAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPE--FE 229
A L++ AK G H DN APAI GG L+ + + P L VL P +
Sbjct: 126 -ALLQAIAKFEG-HPDNAAPAIYGGIQLVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMK 183
Query: 230 APTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRA-PLI 288
A T R +P V + ++N S+ LV A+ GD L SDK+ E +R+ L
Sbjct: 184 ANTHVTRNLIPTSVSLEDAVFNISRTSILVLALSTGDLRMLKSC--SDKLHEQQRSDALF 241
Query: 289 PGMEAVKKVAVEAGAYGCTISGAGPTAVAVV-----------DNEEKGKVIGEKMVEA 335
P K A EAGA+ +SGAGP+ A+V E K + + E M++A
Sbjct: 242 PHFRPCVKAAREAGAHYAFLSGAGPSVCALVGGRHGDPLTQPREERKAESVAEAMIKA 299
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 68.7 bits (169), Expect = 4e-15
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 130 SLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNI 189
+ +E +PLG+GLGSSAA A A +A+NE+FG L +EL LE+E + D++
Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNSGDDV 60
Query: 190 APAIMGG 196
A ++ GG
Sbjct: 61 AASVYGG 67
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 72.0 bits (177), Expect = 3e-14
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 41/240 (17%)
Query: 126 SVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV---- 181
SL ++ +P+G+GLGSSAA + A A++ FG +L P+EL + E V
Sbjct: 81 LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA 140
Query: 182 SGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLV--------TPEFEAPTK 233
SG D IA GG V + + + + L +++ T E A
Sbjct: 141 SG--ID-IATITYGGLVAFKKGFDFEKLEIEL-----LGTLVIGDTGVPGSTKELVAGVA 192
Query: 234 KMRAALPAEVG-MPHHIWNCSQAGALVAAVLNGDPVGLGKALS------SDKIVEPKRAP 286
K+ P + + I Q AA+ GD LG+ ++ V
Sbjct: 193 KLLEEEPEVIDPILDAIGELVQ--EAEAALQTGDFEELGELMNINQGLLKALGVST---- 246
Query: 287 LIPGMEAVKKVAVEAGAYGCTISGA--GPTAVAVVDNEEKGKVIGEKMVEAF----WKEG 340
P ++ + + A GA G ++GA G +A+ NEE + + ++ +A W EG
Sbjct: 247 --PELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKAGIALLWIEG 304
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 65.1 bits (159), Expect = 4e-12
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 24/215 (11%)
Query: 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIA 173
++A++ GL + +E +P GSGL SS+A A AV + G ++ +++
Sbjct: 50 RILTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRL 109
Query: 174 GLES--EAKVSGYHA-DNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEA 230
G +A +S A D+ A + +GG V+ + L R ++ P+
Sbjct: 110 GARLSKDAGLSVTGAFDDAAASYLGGIVITDNRRMKILKRDKLEG---CTAAVLVPKEGE 166
Query: 231 PTKKMRAA-LPAEVGMPHHIWNCSQAGA-LVAAVLNGDPVGLGKALSSDKIVEPKRAPLI 288
+ + + +N + G L A VLNG V AL
Sbjct: 167 RRENVDLNRFRRISPVVEEAFNLALRGEYLKAMVLNG--VAYATALG------------Y 212
Query: 289 PGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEE 323
P A K A+EAGA +SG GP+ A+ ++ E
Sbjct: 213 PLEPASK--ALEAGAAAAGLSGKGPSYFALTEDPE 245
>gnl|CDD|224858 COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol
2-phosphate synthase [Lipid metabolism].
Length = 289
Score = 60.4 bits (147), Expect = 2e-10
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+S+ L+K +P+G+GLG ++ AAA VA+NE++G L +EL E ++ AD
Sbjct: 85 GVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEEL----AELGLRLG---AD 137
Query: 188 NIAPAIMGGFVLIRSY-EPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMP 246
+ + GG E L+ + + +VL P TK++ P
Sbjct: 138 -VPFFLSGGTAFAEGRGEKLE----PLEDPPEKWYVLAKPGVGVSTKEVYKDPELTRNTP 192
Query: 247 HHIWNCSQAGALVAAVLNGDPVGLGKALSSD--KIVEPKRAPLIPGMEAVKKVAVEAGAY 304
L+AA+ + + L +D K+ P ++ +E GA
Sbjct: 193 KSEP-------LIAALSLENLKQIAPFLINDLEKVALRLY----PEVKEALSELLEYGAL 241
Query: 305 GCTISGAGPTAVAVVDNEEKGKVIGE---KMVEAFW 337
+SG+G T A+ D E++ + + E K V +
Sbjct: 242 PARMSGSGSTVFALFDTEKEAQRVAEQLPKGVCGWV 277
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 59.6 bits (145), Expect = 4e-10
Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 120 KMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEA 179
+ L ++++ +P G GLGSSAA A A A+ + FG++L +EL E+E
Sbjct: 71 YFSELNPPPLEITIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEK 130
Query: 180 KVSGYHADNIAPAI--MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRA 237
G I A GG V E ++ FV+ TK+ A
Sbjct: 131 IAHG-KPSGIDTATSTSGGPVYFEKGEGEFTKLISLD----GYFVIADTGVSGSTKEAVA 185
Query: 238 AL------PAEVGMPH--HIWNCSQAGALVAAVLNGDPVGLG----------KAL--SSD 277
+ E+ I + AA+ +GD LG KAL S
Sbjct: 186 RVRQLLERFPELIDSIMDAIGELTLEA--KAALEDGDVESLGELMNINQGLLKALGVSHP 243
Query: 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAG 312
K+ + + ++A +AGA G ++GAG
Sbjct: 244 KL------------DQLVEIARKAGALGAKLTGAG 266
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 58.1 bits (141), Expect = 1e-09
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 35/202 (17%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+++S+ +P+GSGLGSSAA A A+N + G L +E+ G + E V G A
Sbjct: 75 GVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQG-AAS 133
Query: 188 NIAPAI--MGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRA---ALPAE 242
+ MGGFV I + L + V T TK++ A L E
Sbjct: 134 PTDTYVSTMGGFVTIPDRKKLPFPECG-------IVVGYTGSS-GSTKELVANVRKLKEE 185
Query: 243 VGMPHHIWNC-SQAGALVA----AVLNGDPVGLGKALSSDK-------IVEPKRAPLIPG 290
P I S G + +L+GD V LG+ ++ ++ + + + LI
Sbjct: 186 --YPELIEPILSSIGKISEKGEELILSGDYVSLGELMNINQGLLDALGVSTKELSELI-- 241
Query: 291 MEAVKKVAVEAGAYGCTISGAG 312
A AGA G I+GAG
Sbjct: 242 -----YAARTAGALGAKITGAG 258
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 57.3 bits (139), Expect = 3e-09
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLES--EAKVSGYH 185
G+ + +E +P+GSGL SS+A++ A AV + G ++ E++ G + EA VS
Sbjct: 70 GVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTG 129
Query: 186 A-DNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKK-----MRAAL 239
A D+ + +GG V+ + + L RL+ PE L+ P + + +R
Sbjct: 130 AFDDACASYLGGIVITDNRKMRILRRLDLPELTVLILA---PGEKRLSANVDVNRLRLIA 186
Query: 240 PAEVGMPHHIWNCSQAGA-LVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVA 298
P + + G A VLNG + AL A+K A
Sbjct: 187 PV----VEEAFRLALKGEYFKAMVLNG--ILYCSALG------------YDLEPALK--A 226
Query: 299 VEAGAYGCTISGAGPTAVAVVDNEE 323
+EAGA +SG GP A+ ++ E
Sbjct: 227 LEAGAAAAGLSGTGPAYFALTEDPE 251
>gnl|CDD|234652 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional.
Length = 286
Score = 57.1 bits (139), Expect = 3e-09
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 37/214 (17%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+S++++K +P+ +GL ++ AAA +N+++ L +EL GLE + V +
Sbjct: 84 GVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVP-F--- 139
Query: 188 NIAPAIMGGFVLIRS----YEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEV 243
I GG L PL VL P+ TK +V
Sbjct: 140 ----CIYGGTALATGRGEKITPL-------KSPPSCWVVLAKPDIGVSTK--------DV 180
Query: 244 GMPHHIWNCSQA-----GALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVA 298
+ + + L+ A+ GD G+ + + +E P + +K+
Sbjct: 181 ---YKNLDLDKISHPDTEKLIEAIEEGDYQGICANMGNV--LENVTLKKYPEIAKIKERM 235
Query: 299 VEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKM 332
++ GA G +SG+GPT + D+E + + I +
Sbjct: 236 LKFGADGALMSGSGPTVFGLFDDESRAQRIYNGL 269
>gnl|CDD|235110 PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 300
Score = 53.4 bits (129), Expect = 5e-08
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 42/204 (20%)
Query: 125 RSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDEL--VIAGLESE---- 178
R+ + L ++KG+P+ G+ +A AAAA VA + ++G L DEL + A L S+
Sbjct: 80 RAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPFA 139
Query: 179 ----AKVSGYHADNIAPAIMGG---FVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAP 231
+ + +AP + G +VL + L TP
Sbjct: 140 LLGGTALGTGRGEQLAPVLARGTFHWVLAFAD-----------------GGLSTPAVFRE 182
Query: 232 TKKMRAA-LPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPG 290
++R A P +G P L+AA+ GDP L L +D ++ L P
Sbjct: 183 LDRLREAGDPPRLGEP---------DPLLAALRAGDPAQLAPLLGND--LQAAALSLRPS 231
Query: 291 MEAVKKVAVEAGAYGCTISGAGPT 314
+ + EAGA +SG+GPT
Sbjct: 232 LRRTLRAGEEAGALAGIVSGSGPT 255
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
Members of this family of GHMP kinases were previously
designated as conserved hypothetical protein YchB or as
isopentenyl monophosphate kinase. It is now known, in
tomato and E. coli, to encode
4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
enzyme of the deoxyxylulose phosphate pathway of
terpenoid biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 294
Score = 52.5 bits (126), Expect = 1e-07
Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 21/210 (10%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+++ + K +P+ +GLG ++ AAA V +N+++ L +EL G A V +
Sbjct: 87 GVNIEITKNIPMAAGLGGGSSDAAAVLVGLNQLWNLGLSLEELAELGATLGADVPFF--- 143
Query: 188 NIAPAIMGGFVLIRSY-EPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMP 246
+ GG E + F + + V+ P T + A P
Sbjct: 144 -----VSGGTAFATGRGEIIT----PFEDPPEKWVVIAKPHVSVSTPVVYQAYKLPRNTP 194
Query: 247 HHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYGC 306
+A + + L +D +E + +E G
Sbjct: 195 ------KRAKEWLKKISLECLQLLDSNGLND--LEKVALKRHTEVAQALNWLLEYGLAPE 246
Query: 307 TISGAGPTAVAVVDNEEKGKVIGEKMVEAF 336
+SG+GP A+ D E + + + E+ E
Sbjct: 247 RMSGSGPCVFALFDMESEAEQVLEQAPEWL 276
>gnl|CDD|173078 PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 280
Score = 49.0 bits (117), Expect = 1e-06
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 31/225 (13%)
Query: 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAG 174
A A+ L R VG+ +S+ K +P+ +GLG ++ AA + VNE+ G L + L+ G
Sbjct: 72 AADALLDLSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIG 131
Query: 175 LESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPT-- 232
++ A V + A A G L + E + L VLV P T
Sbjct: 132 VKLGADVPFFIFKKTALAEGIGDKL-TAVEGV----------PPLWVVLVNPGLHVSTAW 180
Query: 233 --KKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPG 290
+ +R ++ + I + A V A+L+ D +E P
Sbjct: 181 VYQNLRLTSRKDLAI---IPRFFGSVAEVCALLSND-------------LESVTIGRFPV 224
Query: 291 MEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEA 335
+ +K+ + AGA G +SG+G T + D+E + E++
Sbjct: 225 IGEIKEELLAAGARGSLMSGSGSTVFGLFDDEAAARAAAEELSRE 269
>gnl|CDD|224819 COG1907, COG1907, Predicted archaeal sugar kinases [General
function prediction only].
Length = 312
Score = 48.1 bits (115), Expect = 3e-06
Identities = 63/260 (24%), Positives = 96/260 (36%), Gaps = 45/260 (17%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+ + + +P GLGS+ A A A A+ E++G +L EL A G
Sbjct: 71 GVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFA-----VGRGGTSGI 125
Query: 188 NIAPAIMGGFVL-------IRSYEPLDL-MRLNFPEKKQLLFVLVTPEFEAPT------- 232
+ GGF++ L RL+FPE FVL PE E
Sbjct: 126 GVYAFEYGGFIVDGGHSFGFLPSSASPLIFRLDFPE--DWRFVLAIPEVERGVSGRREVD 183
Query: 233 --KKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALS---------SDKI-V 280
KK EVG H ++ AV+ D G+AL+ K+
Sbjct: 184 IFKKYCPVPLEEVGELSHR----VLMKMMPAVVERDIESFGEALNEIQELGGKWFKKVEG 239
Query: 281 EPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEG 340
+R + ++ + + A AG S GPT +VD+ E G V + + E
Sbjct: 240 GLQREDVKEIVDEMVEAAYGAG-----QSSWGPTVYGIVDSREAGSV--VRKLIDILLEE 292
Query: 341 NLKAVSMVKRLDRVGARLVG 360
+ V + GA ++G
Sbjct: 293 GIGGEVFVTKARNRGAEILG 312
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 47.3 bits (113), Expect = 6e-06
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 77 YVSLKVDPS----VHPGEVSISEVIGPSKLSKNPLWNCAGIAAISAMKMLGVRSVGLSLS 132
Y L+++ S + + + KL K W I ++ G G+
Sbjct: 31 YTFLEIEKSEKFIFYSENFNEEKTFELDKLEKLNSWADYIKGVIWVLEKRGYEVGGVKGK 90
Query: 133 LEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSG 183
+ LP+G+GL SSA+ A A A+NE + L EL + E+E + G
Sbjct: 91 VSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVG 141
Score = 33.0 bits (76), Expect = 0.23
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 298 AVEAGAYGCTISGA--GPTAVAVVDNEEKGKVIGEKMVEAFWK 338
A+E GAYG ++GA G +A+A+VD + K + IGE+++E + K
Sbjct: 289 ALELGAYGARLTGAGFGGSAIALVD-KGKFESIGEELLEEYKK 330
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 41.7 bits (98), Expect = 4e-05
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 258 LVAAVLNGDPVGLGKALSSDKIVEPK---RAPLIPGMEAVKKVAVEAGAYGCTISGA--G 312
L+ A+ GD LG+ L+ + + L P ++ + + E GA G +SG+ G
Sbjct: 1 LLEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGG 60
Query: 313 PTAVAVVDNEEKGKVIGEKMVEAF 336
PT A+ +EE + + E + EA+
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|235243 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 257
Score = 43.4 bits (103), Expect = 9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 129 LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV----SGY 184
++ +EK +P G+GLG ++ AA + +NE+ KL +EL G + A V SGY
Sbjct: 87 KAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFISGY 146
Query: 185 HADNI 189
+ N+
Sbjct: 147 KSANV 151
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 43.2 bits (102), Expect = 1e-04
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 16/187 (8%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHAD 187
G+ L L+ +P+G G+ SS A A A A G +L E+ + E S
Sbjct: 83 GIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDSIIFDK 142
Query: 188 NIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEF-EAPTKKMRAALPAEVGMP 246
G V+ E L L F K + T ++ + P + A AE+G
Sbjct: 143 ATLFDQREGRVIEFLGEMPPLHILVFEGKG----TVETVDYNQPPRGEKLLAPLAELG-- 196
Query: 247 HHIWNCSQAGALVA-AVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYG 305
LV A+ GDP LG+A + + R P PG+ + ++ E A G
Sbjct: 197 -------NLINLVEKALKVGDPKLLGEAATLSAVKNQDRLPK-PGLNELLRLVEETCAIG 248
Query: 306 CTISGAG 312
++ +G
Sbjct: 249 VIVAHSG 255
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 43.4 bits (103), Expect = 1e-04
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 19/162 (11%)
Query: 39 TTEPEPVFTSVKTFAPATVANLGPCFDF-----LGCAVDGLGDYVSLKVDP-------SV 86
EP T+ FAP V +G D+ L CA++ G YV++ S
Sbjct: 17 FGYVEPTVTA---FAPGRVNLIGEHTDYNGGFVLPCAIN-YGTYVAVAKRDDGKVRLYSA 72
Query: 87 HPGEVSISEVIGPSKLSKNPLWNCAGI--AAISAMKMLGVRSVGLSLSLEKGLPLGSGLG 144
+ G + ++K + + A I A++ G GL + + +P+G+GL
Sbjct: 73 NFGNAGDIFFL-LLDIAKEKIDDWANYVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLS 131
Query: 145 SSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHA 186
SSAA A A+A+ +F L EL +E + G +
Sbjct: 132 SSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNC 173
>gnl|CDD|224742 COG1829, COG1829, Predicted archaeal kinase (sugar kinase
superfamily) [General function prediction only].
Length = 283
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 114 AAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIA 173
++ LG VG+ + +PLG G G S A A A+A+ E G L +
Sbjct: 62 ITRKVIEKLGPDGVGVRIESP--VPLGCGYGVSGAGALGTALALAEELG--LGEESAARI 117
Query: 174 GLESEAKVSGYHADNIAPAIMGGFVL 199
+E + D +A GG V+
Sbjct: 118 AHVAEVENGTGLGDVVAQYT-GGLVI 142
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid
metabolism].
Length = 329
Score = 41.6 bits (98), Expect = 4e-04
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 138 PLGSGLGSSAASAAAAAVAVNEMFGNKLLPDEL-VIAGLESEAKVSGYHADNIAPAIMGG 196
P +GL SSAA AAA A A+N ++ L + L IA L S S + +I GG
Sbjct: 100 PTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSG---SA------SRSIFGG 150
Query: 197 FVLIRSYEPLDLM-----RLNFPEKKQLLFVLVTPE 227
FVL E D RL+ ++ ++ ++++P+
Sbjct: 151 FVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPK 186
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 41.4 bits (97), Expect = 4e-04
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 24/206 (11%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYH-- 185
GL + L L SG+G+SA+ + + A++E++ L +E+ ++ E GYH
Sbjct: 94 GLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEG---GYHGT 150
Query: 186 ---ADNIAPAIMGGFVLIRSYEPLDLM-RLNFPEKKQLLFVLVTPEFEAPT-------KK 234
ADN A A GG + R + R+ F ++ L V+ + A T +K
Sbjct: 151 PSGADNTA-ATYGGLISYRRVNGKSVFKRIAF--QQPLYLVVCSTGITASTTKVVGDVRK 207
Query: 235 MRAALPAEVGMPHHIWN--CSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGME 292
++ P +N S+A A+ G+ +G+ ++++ + K ++
Sbjct: 208 LKENQPTWFNRLLENYNACVSEAK---EALQKGNLFRVGELMNANHDLCQKLTVSCRELD 264
Query: 293 AVKKVAVEAGAYGCTISGAGPTAVAV 318
++ + GA G +SG G + V
Sbjct: 265 SIVQTCRTYGALGAKMSGTGRGGLVV 290
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 40.6 bits (96), Expect = 7e-04
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 33/210 (15%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLES--EAKVSGYH 185
G ++ + +PL SGL SS+A+A A +A + G L +++ G+++ +A V+
Sbjct: 75 GATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTG 134
Query: 186 ADNIAPAIM-GGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTK-----KMRAAL 239
A + A A GG + + E M+L ++ +L +++ P A + +M+
Sbjct: 135 AFDDACASYFGGVTVTDNRE----MKLLKRDEVELDVLVLIPPEGAFSASADVERMKLIA 190
Query: 240 PAEVGMPHHIWNCSQAGALV-AAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVA 298
P + + G A LNG + AL P P +E A
Sbjct: 191 P----YVDMAFELALDGEYFKAMTLNG--LLYSSALGF---------PTEPALE-----A 230
Query: 299 VEAGAYGCTISGAGPTAVAVVDNEEKGKVI 328
+EAGA G +SG GP+ VA+VD E+ +V
Sbjct: 231 LEAGAVGVGLSGTGPSYVAIVDEEDPEEVK 260
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 312
Score = 39.9 bits (94), Expect = 0.001
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 61/251 (24%)
Query: 119 MKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE 178
K G+ ++LEK +P+G+GL + AAA V +N ++G L EL ES
Sbjct: 77 RKRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPEL-----ESL 131
Query: 179 AKVSGYHADNIAPAIMGGFVLI----RSYEPLDLMRLNFPEKKQLLFVLV--------TP 226
A G +D + I GG L EPL P+ L VL TP
Sbjct: 132 AAELG--SD-VPFCIAGGTQLCFGRGEILEPL-------PDLDGLGVVLAKYPSLSVSTP 181
Query: 227 --------EF-------EAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLG 271
+F E ++ R AL + G L+ A+ DP +
Sbjct: 182 WAYKTYRQQFGDTYLSDEEDFEQRRQALRS--------------GPLLQAISAKDPPPIA 227
Query: 272 KALSSD--KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIG 329
+ L +D K+V P+ + + ++ ++ G G +SG+GPT A+ +++E+ +
Sbjct: 228 QLLHNDLEKVVLPEYPQV---AKLLELLSSLPGCLGTMMSGSGPTCFALFESQEQAEQAL 284
Query: 330 EKMVEAFWKEG 340
E++ EAF G
Sbjct: 285 EQVREAFADPG 295
>gnl|CDD|134340 PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 288
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 129 LSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDEL 170
+S + K +P+G+GL +++AA A A+N++F L +EL
Sbjct: 81 VSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEEL 122
>gnl|CDD|184767 PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 275
Score = 38.2 bits (89), Expect = 0.004
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDEL 170
A+ + + S+ +EK +P+G+GLG +++AA +NE+ GN L +EL
Sbjct: 67 ALRLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEEL 122
>gnl|CDD|237767 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 276
Score = 36.7 bits (85), Expect = 0.011
Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 30/189 (15%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE--AKVSGYH 185
G+ ++LEK LPL +GLG ++ AAA +A+ +++ P + + L A V +
Sbjct: 83 GVRITLEKRLPLAAGLGGGSSDAAATLLALAQLY-----PAPVDLPALALTLGADVPFFL 137
Query: 186 ADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGM 245
A A G L PL+L + VLV P + L E
Sbjct: 138 LGGAAEARGVGERL----TPLELPPVP--------LVLVNPGVAVSARDAYRWLEPEDFG 185
Query: 246 PHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEAVKKVAVEAGAYG 305
P A++AA+ G+ +L E P ++ V AG G
Sbjct: 186 PE-----LDVEAILAALARGEEPPYWNSL------EGPVFARHPELQEVLAALRAAGLRG 234
Query: 306 CTISGAGPT 314
+SG+G T
Sbjct: 235 VLMSGSGST 243
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 34.7 bits (80), Expect = 0.058
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 44/206 (21%)
Query: 137 LPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEA---KVSGYHADNIAPAI 193
P GSGLGSS+A A A++ G L P EL E E K+ G D A A
Sbjct: 98 APPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAA- 156
Query: 194 MGGFVLIRSY-------EPLDLM--RLNFPEKKQLLFV---------LVTPEFEAPTKKM 235
GGF + PL + R E + LL+ ++ +
Sbjct: 157 FGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGD 216
Query: 236 RAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALS---------SDKIVEPKRAP 286
L A M + A + A++ D G+ L S +I
Sbjct: 217 EETLEALHEM------KALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDA--- 267
Query: 287 LIPGMEAVKKVAVEAGAYGCTISGAG 312
++ + ++A++ GAYG +SGAG
Sbjct: 268 ----IDRIYELALKNGAYGGKLSGAG 289
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 34.4 bits (79), Expect = 0.094
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE 178
G + +P GSGL SSAA A + M L ++++ +E
Sbjct: 110 GADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAE 160
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 33.7 bits (78), Expect = 0.10
Identities = 43/146 (29%), Positives = 55/146 (37%), Gaps = 33/146 (22%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKV-----S 182
+ LEK LP+ +G+G +A AAAA + ++G L + L L A V S
Sbjct: 90 PGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADVPVCLDS 149
Query: 183 GYHADNIAPAIMGGF--VLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAL- 239
P IM G L PL P L VLV P T + AL
Sbjct: 150 -------RPLIMRGIGEEL----TPL----PGLPS---LPAVLVNPGVPVATPDVFRALG 191
Query: 240 ----PAEVGMPHHIWNCSQAGALVAA 261
P G P + A AL+AA
Sbjct: 192 LRDGPPLPGAPDPLA---SADALLAA 214
>gnl|CDD|237769 PRK14616, PRK14616, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 287
Score = 33.5 bits (77), Expect = 0.12
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 116 ISAMKML----GVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEM 160
I A K L GV G+S++L+K +P G+GLG ++ AA +NE+
Sbjct: 68 IRAAKALQEYAGVSK-GVSITLDKRVPFGAGLGGGSSDAATVLRVLNEL 115
>gnl|CDD|237766 PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 269
Score = 33.4 bits (77), Expect = 0.14
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 133 LEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDEL 170
L K +P+G+GLG ++ AA +N+ F L +EL
Sbjct: 87 LYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEEL 124
>gnl|CDD|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps
that arise during DNA repair, recombination and
replication. DNA polymerase family A, 5'-3' polymerase
domain. Family A polymerase functions primarily to fill
DNA gaps that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified into six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaeota polymerase II (class D), human
polymerase beta (class X), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerases are found primarily in
organisms related to prokaryotes and include prokaryotic
DNA polymerase I, mitochondrial polymerase gamma, and
several bacteriophage polymerases including those from
odd-numbered phage (T3, T5, and T7). Prokaryotic
polymerase I (pol I) has two functional domains located
on the same polypeptide; a 5'-3' polymerase and a 5'-3'
exonuclease. Pol I uses its 5' nuclease activity to
remove the ribonucleotide portion of newly synthesized
Okazaki fragments and the DNA polymerase activity to
fill in the resulting gap. The structure of these
polymerases resembles in overall morphology a cupped
human right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 347
Score = 33.2 bits (76), Expect = 0.17
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 6/137 (4%)
Query: 226 PEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKI-----V 280
P + + +R A A+ G + + SQ V A L+GD +
Sbjct: 84 PRRDPLGRDIRQAFVADPGWTLVVADASQLELRVLAALSGDEALAEAFGRGGDLYTATAS 143
Query: 281 EPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEG 340
P+ G K+A YG T SG +A + + +
Sbjct: 144 AMFGVPVGGGERQHAKIANLGAMYGAT-SGISARLLAQLRRISTKEAAALIELFFSRFPA 202
Query: 341 NLKAVSMVKRLDRVGAR 357
KA+ V+ R G R
Sbjct: 203 FPKAMEYVEDAARRGER 219
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 33.3 bits (76), Expect = 0.22
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFG 162
G+ ++L +P GSGLG+S+ AA A+++ G
Sbjct: 726 GIEITLLAAIPAGSGLGTSSILAATVLGAISDFCG 760
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 32.8 bits (75), Expect = 0.27
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 127 VGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFG 162
VGL + ++ +P GSGL SSAA +AA+A+ G
Sbjct: 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALG 183
>gnl|CDD|173077 PRK14613, PRK14613, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 297
Score = 32.6 bits (74), Expect = 0.28
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 222 VLVTPEFEAPTKKMRAAL--PAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKI 279
+L T +M A L P + N + + L++++ GD V L L +D
Sbjct: 174 ILALTPQVMNTGEMYALLKKPLQESASQKNGN-TLSEDLISSLKVGDWVSLQGRLEND-- 230
Query: 280 VEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEK 324
EP L P + +K +E G+ C+++G+G + +V E
Sbjct: 231 FEPVAFQLHPELGVLKDKFLEFGSSYCSLTGSGSSMYGLVQGLEI 275
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 32.5 bits (74), Expect = 0.43
Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 14/153 (9%)
Query: 146 SAASAAAAAVAVNEMFG----NKLLPDELVIAGLESEAKVSGYHADNI----APAIMGGF 197
S S A+AVNEMF NK+ D G + N A++G
Sbjct: 715 SPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFT 774
Query: 198 VLIRSYEPLDLMRLNFPEKKQ-LLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAG 256
+L L L LN KKQ ++ E E + +L + G +
Sbjct: 775 ILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMS 834
Query: 257 ALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIP 289
N D +L + V PKR ++P
Sbjct: 835 NPEGLSKNRD-----SSLEAANGVAPKRGMVLP 862
>gnl|CDD|237768 PRK14615, PRK14615, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 296
Score = 31.6 bits (72), Expect = 0.60
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAA 152
L + L KG+P G+GLG +A AAA
Sbjct: 88 PLEVHLRKGIPHGAGLGGGSADAAA 112
>gnl|CDD|129249 TIGR00144, beta_RFAP_syn, beta-RFAP synthase. This protein family
contains several archaeal examples of
beta-ribofuranosylaminobenzene 5-prime-phosphate
synthase (beta-RFAP synthase), an enzyme involved in
methanopterin biosynthesis. In some species, two members
of this family are found. It is unclear whether both act
as beta-RFAP synthase. This family is related to the
GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase). Members
are found so far only in the Archaea and in
Methylobacterium extorquens [Unknown function, Enzymes
of unknown specificity].
Length = 324
Score = 31.0 bits (70), Expect = 0.85
Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 36/251 (14%)
Query: 113 IAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVI 172
AA +K +G G ++ P SGLGS + A V+E +G K E I
Sbjct: 69 EAARKTLKHIGSE--GFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTARE--I 124
Query: 173 AGLESEAKVSGYHADNIAPAIMGGFVL-----------------IRSYEPLDLMRLNFPE 215
A + SG +A GGF++ + + R +FP+
Sbjct: 125 AHIVGRGGTSGI---GVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFPD 181
Query: 216 KKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALV-----AAVLNGDPVGL 270
+L PE ++ + + + + P + + + L+ AV+ GD
Sbjct: 182 WN---IILAIPEIDSVSGRREVNIFQKY-CPVPLRDVERICHLILMKMMPAVVEGDLDAF 237
Query: 271 GKALSSDKIVEPKRAPLIPGMEAVKKVAVEA-GAYGCTISGAGPTAVAVVDNEEKGKVIG 329
G++++ + + K+ +K++ A G +S GPT AV D EK I
Sbjct: 238 GESVNEIQGLGFKKIERELQDPLIKRIIDSMISAPGAGMSSFGPTVYAVTD--EKPGNIA 295
Query: 330 EKMVEAFWKEG 340
+ + F G
Sbjct: 296 GAVADIFGPYG 306
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 30.6 bits (69), Expect = 1.2
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 92 SISEVIGPSKLSKNPLWNCAGIAAISAM--KMLGVRSVGLSLSLEKGLPLGSGLGSSAA- 148
SI+ ++ + + +W +G++A + +LG + ++ E LPLGSGLGSSAA
Sbjct: 93 SIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSE--LPLGSGLGSSAAF 150
Query: 149 ----SAA--AAAVAVNEMFGNK 164
SAA AA+ +++ G
Sbjct: 151 CVALSAALLAASDSISVSTGGN 172
>gnl|CDD|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type,
Gram-positive branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents the low GC
Gram-positive organism forms of the ERG8 type of
phosphomevalonate kinase [Central intermediary
metabolism, Other].
Length = 358
Score = 30.6 bits (69), Expect = 1.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 142 GLGSSAASAAAAAVAVNEMFGNKLLPDEL----VIAGLESEAKVSGYHADNIAPAIMGGF 197
GLGSS A A A+N + +L DE+ ++A E + K S +IA + GG+
Sbjct: 118 GLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSC---GDIAASTYGGW 174
Query: 198 V 198
+
Sbjct: 175 I 175
>gnl|CDD|234731 PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional.
Length = 271
Score = 30.5 bits (70), Expect = 1.3
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 128 GLSLSLEKGLPLGSGL--GSSAASAAAAAVAVNEMFGNKLLPDEL 170
G +SL+K LP+G GL GSS AA VA+N ++ L DEL
Sbjct: 87 GADISLDKRLPMGGGLGGGSS--DAATTLVALNRLWQLGLSRDEL 129
>gnl|CDD|177784 PLN00190, PLN00190, 60S ribosomal protein L21; Provisional.
Length = 158
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 74 LGDYVSLKVDPSVHPG 89
+GDYV +KV+ ++H G
Sbjct: 36 VGDYVDIKVNGAIHKG 51
>gnl|CDD|235275 PRK04306, PRK04306, 50S ribosomal protein L21e; Reviewed.
Length = 98
Score = 28.3 bits (64), Expect = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 75 GDYVSLKVDPSVHPG 89
GD V + +DPSVH G
Sbjct: 38 GDKVHIVIDPSVHKG 52
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 29.4 bits (67), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 128 GLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESE 178
G + + +P G+GL SSA+ V + ++F L ELV G ++E
Sbjct: 112 GFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTE 162
>gnl|CDD|107305 cd06310, PBP1_ABC_sugar_binding_like_2, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 273
Score = 29.1 bits (66), Expect = 3.0
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 258 LVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMEA-VKKVAVEAGAYGCTISGAGPTAV 316
L+ + P + A + K + P PL +A + V +++G ++ +
Sbjct: 49 LLENAIARGPDAILLAPTDAKALVP---PLKEAKDAGIPVVLIDSG-----LNSDIAVSF 100
Query: 317 AVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVK 349
DN GK+ E + E K+G + +S V
Sbjct: 101 VATDNVAAGKLAAEALAELLGKKGKVAVISFVP 133
>gnl|CDD|176917 cd08908, START_STARD12-like, C-terminal lipid-binding START domain
of mammalian STARD12 and related proteins, which also
have an N-terminal Rho GTPase-activating protein
(RhoGAP) domain. This subgroup includes the
steroidogenic acute regulatory protein (StAR)-related
lipid transfer (START) domains of STARD12 (also known as
DLC-1, Arhgap7, and p122-RhoGAP) and related proteins.
It belongs to the START domain family, and in turn to
the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC)
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket. Proteins belonging to this
subgroup also have an N-terminal SAM (sterile alpha
motif) domain and a RhoGAP domain, and have a
SAM-RhoGAP-START domain organization. The precise
function of the START domain in this subgroup is
unclear.
Length = 204
Score = 29.2 bits (65), Expect = 3.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 166 LPDELVIAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVT 225
L D VI L+S+ ++ Y +++AP +V++R++ R N P+ L
Sbjct: 82 LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTW------RTNLPKGACALLATSV 135
Query: 226 PEFEAPTKKMR 236
AP +R
Sbjct: 136 DHDRAPVAGVR 146
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 29.1 bits (65), Expect = 3.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 115 AISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKL 165
I A++ G G ++S+ + +GSGL SSAA A AV G ++
Sbjct: 78 VIWALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRI 128
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 28.4 bits (64), Expect = 3.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 74 LGDYVSLKVDPSVHPG 89
+GDYV + VD +VH G
Sbjct: 36 VGDYVDIVVDSAVHKG 51
>gnl|CDD|225050 COG2139, RPL21A, Ribosomal protein L21E [Translation, ribosomal
structure and biogenesis].
Length = 98
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 75 GDYVSLKVDPSVHPG 89
GD V + +DPSVH G
Sbjct: 36 GDKVHIDIDPSVHKG 50
>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
Length = 307
Score = 28.7 bits (65), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 318 VVDNEEKGKVIGEKMVEAFWKE 339
V D EEK K+IGE + F +
Sbjct: 93 VTDPEEKRKIIGETFIRVFEEV 114
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 28.8 bits (64), Expect = 5.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 195 GGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMP 246
GG+ IR Y P +L+ + FP+ + +L+ F A MRA+L +P
Sbjct: 136 GGYGAIRIYNP-ELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGHSLP 186
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase. This
enzyme catalyzes the last step in the synthesis of
isopentenyl diphosphate (IPP) in the mevalonate pathway.
Alternate names: mevalonate diphosphate decarboxylase;
pyrophosphomevalonate decarboxylase [Central
intermediary metabolism, Other].
Length = 305
Score = 28.4 bits (63), Expect = 6.2
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 116 ISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGL 175
+ + L L + + P +GL SSA+ AA A +++ +L D ++ +
Sbjct: 73 LDDFRQLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLY--QLPLDTSELSRI 130
Query: 176 ESEAKVSGYHADNIAPAIMGGFV 198
+ S ++ GG+V
Sbjct: 131 ARKGSGSA------CRSLFGGYV 147
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the
C-terminal domain of histone macroH2A1 [General function
prediction only].
Length = 179
Score = 27.7 bits (62), Expect = 7.0
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 290 GMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEG 340
G+ +V A+ G YG + A AV V + I + + +E
Sbjct: 114 GVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFVVYGEET 164
>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP synthetase
has several large insertions relative to prokaryotes.
Length = 295
Score = 28.3 bits (64), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 318 VVDNEEKGKVIGEKMVEAFWKE 339
V D EEK K+IGE +E F +E
Sbjct: 73 VTDPEEKRKIIGETFIEVFEEE 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,553,883
Number of extensions: 1832622
Number of successful extensions: 2076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 85
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)