RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017756
(366 letters)
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 112 bits (282), Expect = 9e-31
Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 48 SVKTFAPATVANLGPCFDFLGCAVDGLGDYVSLKVDPSVHPGEVSISEVIGPSKLSKNPL 107
V+ AP T ANLG FD G + D + ++ + I + + +P
Sbjct: 2 KVRVKAPCTSANLGVGFDVFGLCLKEPYDVIEVEAID-----DKEIIIEVDDKNIPTDPD 56
Query: 108 WNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKLLP 167
N AGI A + + G+ ++++KG+ GSGLGSSAAS+A A A+NE+F L
Sbjct: 57 KNVAGIVAKKMIDDFNIG-KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDK 115
Query: 168 DELVIAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRL 211
+LV E SG HADN+APAI GGF ++ +YEPL+++ +
Sbjct: 116 LKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHI 160
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 85.9 bits (212), Expect = 4e-21
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 218 QLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSD 277
+L ++ P TK+ R LP VG+ + N +A +V A+ N D G+ + SD
Sbjct: 2 KLDILIAIPNISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSD 61
Query: 278 KIVEPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW 337
K++EP R LIP +K+ V+ YG TISG+GP+ +A E +V E ++ ++
Sbjct: 62 KVIEPVRGKLIPNYFKIKE-EVKDKVYGITISGSGPSIIAFPKEEFIDEV--ENILRDYY 118
Query: 338 KEGNLKAVSMVKRLDRVGARLV 359
+ ++ G +V
Sbjct: 119 ENT-------IRTEVGKGVEVV 133
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Thermus thermophilus [TaxId: 274]}
Length = 120
Score = 49.7 bits (118), Expect = 2e-08
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 221 FVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIV 280
V+ P PT + A+ P A++ A+ G+ +L
Sbjct: 6 AVVFFPGLRVPTPLVYRAVR-----PEDFGPDLPVEAILEALARGEEPPYWNSL------ 54
Query: 281 EPKRAPLIPGMEAVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWK 338
E L P ++ V+ G G +SG+G + + + + E + A+ +
Sbjct: 55 EGPAFRLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAEGPDHARRAAEAL-RAWGR 111
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 40.7 bits (95), Expect = 9e-05
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 138 PLGSGLGSSAASAAAAAVAVNEMFGNKLLPDELVIAGLESEAKVSGYHADNIAPAIMGGF 197
P +GL SSAA AA A+ +++ E+ K SG + ++ GG+
Sbjct: 111 PTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIAR----KGSG----SACRSLFGGY 162
Query: 198 VLIRSYEPLD 207
V + D
Sbjct: 163 VAWEMGKAED 172
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 33.7 bits (76), Expect = 0.024
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 22/118 (18%)
Query: 106 PLWNCAGIAAISAMKMLGVRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEMFGNKL 165
L A + A+ L + + LP G+GLGSSAA + A A+
Sbjct: 106 GLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVT 165
Query: 166 LP---------------DELVIAGLESEAKV----SGYHADNIAPAIMGGFVLIRSYE 204
P + E E + SG DN + GG + + +
Sbjct: 166 NPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV--DNSV-STWGGALRYQQGK 220
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 31.6 bits (71), Expect = 0.10
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 292 EAVKKVAVEAGAYGCTISGAGP--TAVAVVDNEEKGKVIGEKMVEAFWKEGNLKA 344
+ +AG G ++GAG A+A+V ++ + + + + + A
Sbjct: 116 TLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFR-KAVGQVYEEVVGYPA 169
>d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 143
Score = 30.8 bits (69), Expect = 0.11
Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 3/69 (4%)
Query: 201 RSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVA 260
P D +L+ + A + + M N G +
Sbjct: 46 IEMNPDDCKQLDVTGGDIVEVYNDFGSTFAMVYPVAEIKRGQTFMLFGYVNGI-QGDVTT 104
Query: 261 AVLNGDPVG 269
D
Sbjct: 105 DWT--DRDI 111
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 95
Score = 26.2 bits (58), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 75 GDYVSLKVDPSVHPG 89
G+ V LK+DPSV G
Sbjct: 36 GEKVHLKIDPSVPNG 50
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein
{Shigella flexneri [TaxId: 623]}
Length = 233
Score = 27.0 bits (59), Expect = 3.0
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 334 EAFWKEGNLKAVSMVKRLDRVGARLVGSVRAPR 366
+ F G +K R+ V LV R
Sbjct: 181 QEFDAAGRMKPSPYYDRIADVMEELVRFTALVR 213
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 130
Score = 25.9 bits (57), Expect = 5.5
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 172 IAGLESEAKVSGYHADNIAPAI--MGGFVLIRSYEPLDLMRLNFP 214
+ E KVSGY +I + M F ++ ++ +F
Sbjct: 65 FSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLK-HFR 108
>d2jioa1 b.52.2.2 (A:601-723) Periplasmic nitrate reductase alpha
chain, NapA {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 123
Score = 25.4 bits (55), Expect = 7.3
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 3/63 (4%)
Query: 207 DLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGD 266
D R ++ E P + P + +P L D
Sbjct: 49 DAARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAVPFFDPKKL-VNKLFLDAT--D 105
Query: 267 PVG 269
PV
Sbjct: 106 PVS 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,308,838
Number of extensions: 60635
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 13
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)