BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017762
(366 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2
PE=2 SV=1
Length = 364
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/364 (57%), Positives = 278/364 (76%), Gaps = 15/364 (4%)
Query: 7 FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
FWR+HRRK+ +T G LG GYLLYKLY+S RR+ADL+R+ + E+DE++K QM+AH+E
Sbjct: 7 FWRKHRRKVLVTAGCLGSGYLLYKLYNSHTRRLADLERELAHERENDEIIKTQMKAHFES 66
Query: 63 VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
+Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK LS EKL+LWD LKILS
Sbjct: 67 IQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLWDELKILS 123
Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-PDADLIDRDDQQKFLAS 181
FT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L + DLIDRDD+QKFL+S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDDEQKFLSS 183
Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
D+L M ++IS++Q +A+E LKGKQL+D+ T VL ET MQI++VFMS GSPH WVD
Sbjct: 184 ADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTGSPHHWVD 243
Query: 242 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
+L MPQD + + T+ DE +KF +LMVETR VL S E+T++V++S K D
Sbjct: 244 YLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEISLKCFTDV 298
Query: 301 LIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 359
L++EM Q+ G L +G PLAK++P++ + + AEPS NR +Q+IR +PEV+LFFTLL
Sbjct: 299 LVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEVKLFFTLL 358
Query: 360 YANM 363
YANM
Sbjct: 359 YANM 362
>sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1
PE=2 SV=2
Length = 358
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/363 (56%), Positives = 269/363 (74%), Gaps = 19/363 (5%)
Query: 7 FWRRHRRKIFITTGVLGGGYLLYKLYDSQ-RRIADLDRQ---QCEHDELLKAQMQAHYEE 62
WR+HRRKI +TT LG GYLLYKLY++ R++ADL+R+ + E+DE++K QM+AH++
Sbjct: 7 LWRKHRRKILVTTTCLGSGYLLYKLYNAHTRKLADLERELANERENDEIIKTQMKAHFDN 66
Query: 63 VQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILS 122
+Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK L SEKL+LW+ LKILS
Sbjct: 67 IQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLWNELKILS 123
Query: 123 FTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDA-DLIDRDDQQKFLAS 181
FT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L D DLI+RDD+QKFL S
Sbjct: 124 FTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDDEQKFLTS 183
Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
D+LA GM ++ISN+Q A E LKGKQL+D+ T L ET M+IL+VFMS GSPH WVD
Sbjct: 184 ADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTGSPHHWVD 243
Query: 242 FL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
+L M QD S D T TKF L+ ETR VL+S ++++V ++S K A
Sbjct: 244 YLMMSQD----ATTDVSSSDAT----VTKFHLLITETREVLTSNDFSNVAEISLKCCAVA 295
Query: 301 LIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLY 360
L++EM Q+G L +GM LAKL+P++ + P + AEP NR +Q+IR +PEV+LFFTLLY
Sbjct: 296 LVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVKLFFTLLY 353
Query: 361 ANM 363
ANM
Sbjct: 354 ANM 356
>sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3
PE=2 SV=1
Length = 373
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 177/349 (50%), Gaps = 48/349 (13%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
S+ +F +RH++K VLGG Y+L K Q++I ++ +R+ E+ + +A+ Q H+E
Sbjct: 4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59
Query: 62 EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
QR + T L + L + ++L+ LT L K +P S KLE+W+ LKI+
Sbjct: 60 SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110
Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G++ L D+ QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTVLAPPDV-----QQQYL 165
Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 239
+S+ +L G+ +++ ++ A L L+ + + L + +I + SP W
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRSP-SW 224
Query: 240 VDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTSVV 290
+D +D+ L DE T A + +L+ ETR +L S ++++V+
Sbjct: 225 ID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDFSTVL 280
Query: 291 DMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 326
+ L+D M +Q G S+ S +PLAK++P V
Sbjct: 281 NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIV 329
>sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1
Length = 373
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 197/390 (50%), Gaps = 55/390 (14%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
S+ +F +RH++K VLGG Y+L K Q++I ++ +R+ E+ + +A+ Q H+E
Sbjct: 4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59
Query: 62 EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
QR + T L + L + ++L+ LT L K +P S KLE+W+ LKI+
Sbjct: 60 SNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110
Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLAS 181
SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D QQ++L+S
Sbjct: 111 SFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTILAPPDVQQQYLSS 167
Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
+ +L G+ +I+ ++ A + L L+ + + L + +I + S W++
Sbjct: 168 IQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWIN 226
Query: 242 ----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTS 288
++MP D V A G D TT+ +L+ ETR +L S ++++
Sbjct: 227 KDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFST 278
Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
V++ L+D M +Q G S+ S +PLAK++P V S+ +
Sbjct: 279 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS 338
Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
E PS+ +Q + T+ +V+ F +Y S
Sbjct: 339 ETPSH--FVQDLLTMEQVKDFAANVYEAFS 366
>sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2
SV=1
Length = 373
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 198/390 (50%), Gaps = 55/390 (14%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
S+ +F +RH++K VLGG Y+L K Q++I ++ +R+ E+ + +A+ Q H+E
Sbjct: 4 SVWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59
Query: 62 EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
QR + T L + L + ++L+ LT L K +P S KLE+W+ LKI+
Sbjct: 60 SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110
Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLAS 181
SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D QQ++L+S
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTILAPPDVQQQYLSS 167
Query: 182 VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
+ +L G+ +I+ ++ A + L L+ + + L + +I + S W++
Sbjct: 168 IQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS-SSWIN 226
Query: 242 ----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTS 288
++MP D V A G D TT+ +L+ ETR +L S ++++
Sbjct: 227 KDGSKSLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLESPDFST 278
Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
V++ L+D M +Q G S+ S +PLAK++P V S+ +
Sbjct: 279 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS 338
Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
E PS+ +Q + T+ +V+ F +Y S
Sbjct: 339 ETPSH--FVQDLLTMEQVKDFAANVYEAFS 366
>sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1
Length = 373
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 185/362 (51%), Gaps = 53/362 (14%)
Query: 6 DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYEEVQ 64
+F +RH++K VLGG Y+L K Q++I ++ +R+ E+ + +A+ Q H+E Q
Sbjct: 7 NFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFESNQ 62
Query: 65 RIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFT 124
R + T L + L + ++L+ LT L K +P S KLE+W+ LKI+SFT
Sbjct: 63 RTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWEDLKIISFT 113
Query: 125 KLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDY 184
+ +VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D QQ++L+S+ +
Sbjct: 114 RSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG--TTVLAPPDVQQQYLSSIQH 170
Query: 185 LANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD--- 241
L G+ +I+ ++ A + L L+ + + L + +I ++ S W++
Sbjct: 171 LLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKS-SSWINNDG 229
Query: 242 -------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLSSAEYTSVVD 291
++MP D V A G D TT+ +L+ ETR +L S ++++V++
Sbjct: 230 SKSLLCHYMMP-DEETPLAVQACGLSPRDVTTI-------KLLNETRDMLESPDFSTVLN 281
Query: 292 MSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLAE-P 337
L+D M +Q G S+ S +PLAK++P + S+ +E P
Sbjct: 282 TCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETP 341
Query: 338 SN 339
S+
Sbjct: 342 SH 343
>sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=2 SV=1
Length = 372
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 194/390 (49%), Gaps = 56/390 (14%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
S+ +F +RH++K VLGG Y+L K Q++I ++ +R+ E+ + +A+ Q H+E
Sbjct: 4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKIREIQEREAAEY--IAQARRQYHFE 59
Query: 62 EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
QR + T L + L + ++L+ LT L K +P S KLE+W+ LKI+
Sbjct: 60 SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWEDLKII 110
Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G++ L D+ QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTVLAPPDV-----QQQYL 165
Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ- 238
+S+ +L G+ +++ ++ A L L+ + + L + +I + HQ
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI----RILVEQHQS 221
Query: 239 -WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEYTS 288
W D +D+ L DE T A + +L+ ETR +L S ++++
Sbjct: 222 SWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFST 277
Query: 289 VVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLLA 335
V++ L+D M +Q G S+ S +PLAK++P V S+ +
Sbjct: 278 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCS 337
Query: 336 E-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
E PS+ +Q + + +V+ F +Y S
Sbjct: 338 ETPSH--FVQDLLMMEQVKDFAANVYEAFS 365
>sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1
SV=1
Length = 372
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 197/392 (50%), Gaps = 60/392 (15%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADL-DRQQCEHDELLKAQMQAHYE 61
S+ +F +RH++K VLGG Y+L K Q+++ ++ +R+ E+ + +A+ Q H+E
Sbjct: 4 SMWNFLKRHKKKCIFLGTVLGGVYILGKY--GQKKLREIQEREAAEY--IAQARRQYHFE 59
Query: 62 EVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKIL 121
QR + T L + L + ++L+ LT L K +P S KLE+W+ LKI+
Sbjct: 60 SNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWEDLKII 110
Query: 122 SFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR--GLGSSDLPDADLIDRDDQQKFL 179
SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G+S L D+ QQ++L
Sbjct: 111 SFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTSILAPPDV-----QQQYL 165
Query: 180 ASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI---LEVFMSM--- 233
+S+ +L G+ +++ ++ A L L+ + + L + +I +E S
Sbjct: 166 SSIQHLLGDGLTELVTVIKQAVQRILGSISLKHSLSLLDLEQKLKEIRTLVEQHRSCWND 225
Query: 234 --GSPHQWVDFLMPQD-----IRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEY 286
S ++MP + + Y L S D TT+ +L+ ETR +L S ++
Sbjct: 226 KDASKSSLCHYMMPDEETPLAAQAYGL---SPRDITTI-------KLLNETRDMLESPDF 275
Query: 287 TSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSL 333
++V++ L+D M +Q G S+ S +PLAK++P V S+
Sbjct: 276 STVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSV 335
Query: 334 LAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 364
+E PS+ +Q + + +V+ F +Y S
Sbjct: 336 CSETPSH--FVQDLLMMEQVKDFAANVYEAFS 365
>sp|Q54U86|PEX3_DICDI Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3
PE=3 SV=1
Length = 405
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/373 (20%), Positives = 162/373 (43%), Gaps = 62/373 (16%)
Query: 7 FWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRI 66
F H+ +F+ + G YL + + S +R + +L K ++ ++E Q++
Sbjct: 27 FLYNHKMGVFLVSFSSGVAYLYHNITQSHKR---------KQIKLAKERVMTYFESTQKL 77
Query: 67 ADATTLPHAMHYLSIRIAEELDLSPLTDKL-------LRGKEQPYTLSSSEKLELWDRLK 119
++ + I + +D + + DK+ +R ++ P SEKL+L D+LK
Sbjct: 78 SERE--------VDAIITKFIDENKILDKIQTPSLASIRSEKDP-----SEKLKLTDQLK 124
Query: 120 ILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFL 179
+ TKL L+ + MV+++ R+Q+N++G++ Y+D + LI++ + F+
Sbjct: 125 VSIITKLFSVLYIIPMVTIFNRLQINLIGKYCYLDYVL-YKDQEQHSMRLINQQTESNFI 183
Query: 180 ASVD---YLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL--------- 227
S + + + I+ +Q +LK ++ + E F+++L
Sbjct: 184 NSRNNCYFFKDINFSQFINLIQEQIKISLKDWKI----DQQSSFEGFLKLLINIRNNFEK 239
Query: 228 -EVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMV---ETRAVLSS 283
E+ S+ S + + +L+P + LV + E ++ L + E R + S
Sbjct: 240 KEIIASISSDNSLLKYLIPTEEEIDNLVQSQKTPEN--DNDIEYQNLKMLYNEIRNIFES 297
Query: 284 AEYTSV----VDMSFKAAVDALID-----EMRVQSGGSLISGMPLAKLVPR-VVQMSPSL 333
++ V ++ SF L + E++ Q ++ +P+ +P+ +V M +
Sbjct: 298 QKFYDVLKDSINQSFLEFTKNLREDFESTELKKQIDSIVLPDLPIEMEIPKPLVTMHNII 357
Query: 334 LAEPSNNRIIQVI 346
L N +I +I
Sbjct: 358 LLPKINKQIGNII 370
>sp|P28795|PEX3_YEAST Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1
Length = 441
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 26/166 (15%)
Query: 9 RRHRRKIFI---------TTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAH 59
+RHR K+ I TTG + ++ LY Q RI + +H +K Q++
Sbjct: 12 QRHRGKVLISLTGIAALFTTGSVVVFFVKRWLYKQQLRITE------QH--FIKEQIKRR 63
Query: 60 YEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSE--------- 110
+E+ Q + T + + +L+L + +L K Q SSE
Sbjct: 64 FEQTQEDSLYTIYELLPVWRMVLNENDLNLDSIVTQLKDQKNQLTRAKSSESRESSPLKS 123
Query: 111 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 156
K ELW+ L++ S KLV + V+ + L R+Q+NIL R+ Y+D+A
Sbjct: 124 KAELWNELELKSLIKLVTVTYTVSSLILLTRLQLNILTRNEYLDSA 169
>sp|Q92262|PEX3_PICPA Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3
PE=3 SV=1
Length = 455
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 109/246 (44%), Gaps = 53/246 (21%)
Query: 9 RRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQR--- 65
RR+++K I++G++G GY + K ++ +I + + + + K Q++ + + Q
Sbjct: 10 RRNKKKFLISSGIIGVGYYVTKTINN--KIQEF-QNRIREENFAKEQIKRRFHQTQSDCY 66
Query: 66 -------------IADATTLPHAMHYLSIRIAEEL----DL-----SPLTDKLLRGKE-- 101
I D + L IR E+ D+ + L+D +E
Sbjct: 67 MTFLSLLPVLCEPIMDDLPVETITKQLQIRRLEKQIGNKDVKNSGSTVLSDDFSTSQEGA 126
Query: 102 ------QPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDT 155
+P L S K +LW LKI + T+ + ++ +++ +++ +Q+NIL R Y++T
Sbjct: 127 ISEDTNKPPELKS--KNQLWQELKIKAITRFLTLIYCESLLIVFLHLQLNILSRKSYLET 184
Query: 156 ARGLGSSDLPDADLIDRD--------------DQQKFLASVDYLANYGMQAMISNVQAAA 201
A L +S+ DL+D++ +Q FL+ +L N G + + ++
Sbjct: 185 AIRL-ASETQGIDLVDQESNGDFSGNTQDENLSEQAFLSFSWWLLNKGWLEIKNKIEPCV 243
Query: 202 DEALKG 207
++ G
Sbjct: 244 EQHFGG 249
>sp|Q01497|PEX3_PICAN Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1
Length = 457
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 52/238 (21%)
Query: 6 DFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQR 65
D RH++K+ TGV+ Y + + ++A+L+ ++ + + K Q++ +++ Q
Sbjct: 7 DLVSRHKKKLLFGTGVIAVSYAVSSFVSN--KLAELN-ERLKEENFAKEQIKRRFKQTQN 63
Query: 66 IADATTLPHAMHYLSIRIAEELDLSPLTDKLLRG-------------------------- 99
T L + L+ I E L + +T +L
Sbjct: 64 DCYMTFL-SLLPVLTEPIYEALKVEEITRELQNKRFERQKAKNAPVGNSTDPALSTVLSD 122
Query: 100 -------KEQPY---TLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGR 149
KE P + K +LW+ L+ S T+ + L+ +++ +++ +Q+NIL R
Sbjct: 123 DFSVHNEKENPMHTGVQQTKSKTQLWNELRNQSITRFLTLLYCESLLIVFLHLQLNILSR 182
Query: 150 HLYIDTARGLGSS------------DLPDADLIDRDDQQKFLASVDYLANYGMQAMIS 195
Y++TA L S DL A+L +D++ + S N QA +S
Sbjct: 183 RSYLETAIKLASKTKGIKLENESNVDLDPANLFLENDEELAMGSSRQDENLAEQAFLS 240
>sp|Q874C0|PEX3_YARLI Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX3 PE=3 SV=1
Length = 431
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 94/437 (21%), Positives = 170/437 (38%), Gaps = 90/437 (20%)
Query: 6 DFWRRHRRKIFITTGVLGGGYLLY-----KLYDSQRRIADLDRQQCEHDELLKAQMQAHY 60
DF+RRH++K+ GV YL K ++ Q R++ + K ++ +
Sbjct: 2 DFFRRHQKKVLALVGVALSSYLFIDYVKKKFFEIQGRLS--------SERTAKQNLRRRF 53
Query: 61 EEVQRIADAT--------TLPHAMHYLSIRIAEELDLS--PLTDKLL----------RGK 100
E+ Q+ AD T T P Y +I EL P TD++L +
Sbjct: 54 EQNQQDADFTIMALLSSLTTPVMERYPVDQIKAELQSKRRP-TDRVLALESSTSSSATAQ 112
Query: 101 EQPYTLSSS------EKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYID 154
P S + K +LW LK + ++ ++A ++ + R+Q+NILGR Y++
Sbjct: 113 TVPTMTSGATEEGEKSKTQLWQDLKRTTISRAFSLVYADALLIFFTRLQLNILGRRNYVN 172
Query: 155 TARGLGS---------------SDLPD----ADL----------IDRDDQQKFLASVDYL 185
+ L DL D DL +D D +++L +L
Sbjct: 173 SVVALAQQGREGNAEGRVAPSFGDLADMGYFGDLSGSSSFGETIVDPDLDEQYLTFSWWL 232
Query: 186 ANYGMQAMISNVQAAA----DEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVD 241
N G ++ V+ A D +L + ++ T M +++ ++ SP ++
Sbjct: 233 LNEGWVSLSERVEEAVRRVWDPVSPKAELGFDELSELIGRTQM-LIDRPLNPSSPLNFLS 291
Query: 242 FLM-PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDA 300
L+ P++ Y L + G T L+ ET + S V++ + +
Sbjct: 292 QLLPPREQEEYVLAQNPSDTAAPIVGPT-LRRLLDETADFIESPNAAEVIERLVHSGLSV 350
Query: 301 LIDEMRVQSGGSLI-SGMPLAKLVPRVVQMSPSLLAE------------PS-NNRIIQVI 346
+D++ V G + SG P ++P PS+LA P N I V+
Sbjct: 351 FMDKLAVTFGATPADSGSPYPVVLPTAKVKLPSILANMARQAGGMAQGSPGVENEYIDVM 410
Query: 347 RTIPEVELFFTLLYANM 363
+ E+ F ++Y++
Sbjct: 411 NQVQELTSFSAVVYSSF 427
>sp|O14017|YDPE_SCHPO Uncharacterized protein C29A4.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC29A4.14c PE=4 SV=3
Length = 346
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 125/313 (39%), Gaps = 47/313 (15%)
Query: 69 ATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVV 128
AT+ H L I + L P+ +L + +S+ EK+ LW++LK +S ++
Sbjct: 66 ATSAISTFHILKDEIIRRIPLLPIIQELRETRMSE--VSAEEKILLWNQLKFMSLVRMFT 123
Query: 129 ALWAVTMVSLYIRVQVNILGRHLY----------IDTARGLGSSDLPDADLIDRDDQQKF 178
L + +L ++ + +LGR + +T R GS + P F
Sbjct: 124 TLAVLAQCNLLCKLALTVLGREAFKEQMVKEFDPSNTLRPSGSDEDPAV----------F 173
Query: 179 LASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ 238
L N + +I VQ A + DI + ++ +++EVF+ + +Q
Sbjct: 174 TGIAYILLNNQLDELIQQVQLAVTLTFEEVSPTDIVDRKLIEALTTRVVEVFV---NNYQ 230
Query: 239 WVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETR---AVLSSAEYTSVVDMSF- 294
+ + G+ E L+ K + +V VL ++ + +D S
Sbjct: 231 F---------------SIDGNKEVLLAEIPK--QYIVTGNLLYRVLELEDFATQMDASIV 273
Query: 295 -KAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 353
K + AL + M G+ LAK++ ++S ++ P + Q ++ + +V
Sbjct: 274 MKNELIALNEHMLTYLPSIPQEGIRLAKILTTFTKISENVFEAPFQEQFFQSLQMVSDVN 333
Query: 354 LFFTLLYANMSDS 366
+ +++++ D
Sbjct: 334 RYMAIVFSSFDDC 346
>sp|O94227|PEX3_KLULA Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PEX3 PE=3 SV=1
Length = 483
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 107 SSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 156
S+ K ELWD LK+ + TK+++ + +++ L R+Q+NIL R Y+DTA
Sbjct: 150 STKSKAELWDDLKLKAITKIIILSYTTSLLMLLTRLQLNILARREYLDTA 199
>sp|Q6BK00|PEX3_DEBHA Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PEX3 PE=3 SV=1
Length = 420
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 43/222 (19%)
Query: 3 SLSDFWRRHRRKIFITTGVLGGGYLLY------KLYDSQRRIADLDRQQCEHDELLKAQM 56
SL+ F RRH++K+ +T + Y L KL + Q + RQ+ +K Q+
Sbjct: 6 SLNSFLRRHKKKLIVTATLTFSAYFLVNQFIIKKLKNFQNSL----RQEL----FVKEQI 57
Query: 57 QAHYEEVQRIADATTL--------PHAMHYLSIRIAEELDL-------SP--LTDKLL-- 97
+ + + Q T L P H I + L L +P ++D LL
Sbjct: 58 KRRFVQTQNDCYLTILALLPVLTQPIINHLPIELITQALKLKKTNSNPTPQEISDSLLTT 117
Query: 98 ------RGKEQPYTLS---SSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILG 148
+ LS S K ELW LKI + T+ + +++++ + L R+Q+NIL
Sbjct: 118 DNLTMHQNTNDSSDLSHYMSLSKTELWKLLKIKTLTRTLTLMYSISGLLLLTRLQLNILA 177
Query: 149 RHLYIDTARGLGSSDLPDADLI-DRDDQQKFLASVDYLANYG 189
R Y+++A L + D + D +Q +L+ +L N G
Sbjct: 178 RRSYLESAIILAGGKVNDTETSQDYFIEQSYLSLSWWLLNKG 219
>sp|Q759H4|PEX3_ASHGO Peroxisomal biogenesis factor 3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PEX3
PE=3 SV=1
Length = 446
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 111 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 156
K ELW LK+ S KL+ ++ M+ L R+Q+NIL R Y++TA
Sbjct: 129 KAELWQELKMRSAVKLLAVVYTTCMLLLLTRLQLNILARREYLETA 174
>sp|P95143|LLDD_MYCTU Putative L-lactate dehydrogenase [cytochrome] OS=Mycobacterium
tuberculosis GN=lldD PE=3 SV=2
Length = 414
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSM 233
D+ + +A V +A G M+ V D + G +LRD+ N + + + + V +M
Sbjct: 165 DRDRSMALVRRVAAAGFDTMLVTV----DVPVAGARLRDVRNGMSIPPA-LTLRTVLDAM 219
Query: 234 GSPHQWVDFLMPQDIRFYKL----VTASGHDETTLSGATKFDEL 273
G P W D L + + F L T + T + FD+L
Sbjct: 220 GHPRWWFDLLTTEPLAFASLDRWPGTVGEYLNTVFDPSLTFDDL 263
>sp|Q3MB92|SECA_ANAVT Protein translocase subunit SecA OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=secA PE=3 SV=1
Length = 930
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 21/110 (19%)
Query: 25 GYLLYKLYDSQRRIA----DLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAM---- 76
G L L +QR++ D+ +Q E+DE++ Q +A Y E +R+ + L +
Sbjct: 706 GMLTRSLEGAQRKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGQDLKEQVIKYA 765
Query: 77 ---------HYLSIRI-AEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
+Y+++ + +EE +L L DK+ KE Y LS + +L D
Sbjct: 766 EKTMDEIVDYYINVDLPSEEWELDKLVDKV---KEFVYLLSDMQASQLED 812
>sp|Q8YMS8|SECA_NOSS1 Protein translocase subunit SecA OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=secA PE=3 SV=1
Length = 930
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 21/110 (19%)
Query: 25 GYLLYKLYDSQRRIA----DLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAM---- 76
G L L +QR++ D+ +Q E+DE++ Q +A Y E +R+ + L +
Sbjct: 706 GMLTRSLEGAQRKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGQDLKEQVIKYA 765
Query: 77 ---------HYLSIRI-AEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 116
+Y+++ + +EE +L L DK+ KE Y LS + +L D
Sbjct: 766 EKTMDEIVDYYINVDLPSEEWELDKLVDKV---KEFVYLLSDMQANQLED 812
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,968,264
Number of Sequences: 539616
Number of extensions: 4667098
Number of successful extensions: 14358
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 14310
Number of HSP's gapped (non-prelim): 37
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)