Query 017762
Match_columns 366
No_of_seqs 135 out of 198
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04882 Peroxin-3: Peroxin-3; 100.0 8.8E-96 2E-100 739.9 26.9 358 2-363 2-432 (432)
2 KOG4444 Peroxisomal assembly p 100.0 8.7E-78 1.9E-82 566.9 31.7 346 1-366 1-359 (359)
3 PF07960 CBP4: CBP4; InterPro 66.2 1.3 2.7E-05 38.2 -1.1 25 8-32 5-29 (128)
4 KOG4444 Peroxisomal assembly p 61.9 6.1 0.00013 39.0 2.5 36 174-213 195-230 (359)
5 PF09402 MSC: Man1-Src1p-C-ter 60.1 4.4 9.5E-05 39.9 1.2 28 3-30 210-237 (334)
6 PRK11677 hypothetical protein; 59.9 3.8 8.2E-05 35.6 0.6 14 53-66 49-62 (134)
7 PF06295 DUF1043: Protein of u 57.7 6.2 0.00014 33.8 1.6 16 53-68 45-60 (128)
8 COG2976 Uncharacterized protei 57.1 26 0.00056 32.6 5.6 94 3-100 13-116 (207)
9 PF14962 AIF-MLS: Mitochondria 54.9 4 8.7E-05 37.1 0.0 17 15-31 50-66 (180)
10 PF15054 DUF4535: Domain of un 29.6 35 0.00075 24.2 1.5 20 12-31 1-20 (46)
11 PRK01381 Trp operon repressor; 29.0 38 0.00082 27.9 1.8 41 187-227 6-46 (99)
12 KOG0506 Glutaminase (contains 28.8 76 0.0016 33.4 4.3 70 266-335 120-214 (622)
13 PF02344 Myc-LZ: Myc leucine z 28.6 98 0.0021 20.2 3.2 19 49-67 13-31 (32)
14 PF14974 DUF4511: Domain of un 25.7 2.7E+02 0.0059 23.2 6.3 79 268-360 5-94 (105)
15 PF15654 Tox-WTIP: Toxin with 24.9 26 0.00056 25.5 0.2 13 19-31 20-32 (54)
16 PF10031 DUF2273: Small integr 20.8 18 0.00038 26.1 -1.4 11 6-16 2-12 (51)
17 PF10855 DUF2648: Protein of u 20.7 34 0.00074 22.3 0.1 18 13-30 2-19 (33)
18 COG3114 CcmD Heme exporter pro 20.4 2.8E+02 0.0061 21.2 4.8 34 124-157 16-49 (67)
No 1
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=100.00 E-value=8.8e-96 Score=739.91 Aligned_cols=358 Identities=34% Similarity=0.553 Sum_probs=252.6
Q ss_pred cchhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 017762 2 LSLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSI 81 (366)
Q Consensus 2 ~s~~~f~~RhR~k~~~~~~v~G~~y~~~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l~~ 81 (366)
.|+|+|++||||||++|||++||||++++|. ++|+.|+| ++...|+++|||+||||||||+||++||+ +|||+|++
T Consensus 2 ~~~~~f~~Rhr~k~~~~~~v~g~~y~~~~y~--~~kl~e~q-~~~~~e~~~ke~~~r~Feq~q~~c~~tv~-~llp~l~~ 77 (432)
T PF04882_consen 2 SSLRSFFRRHRRKIIVTGGVVGGGYLLYQYA--QKKLREQQ-ERMAEERFAKEQLRRRFEQTQRDCDFTVL-ALLPTLSE 77 (432)
T ss_dssp ----------------------------------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred Ccccccccccccccccccccccccccccccc--cccccccc-ccccccccccccccccccccccccccccc-cccccccc
Confidence 4899999999999999999999999999984 45899987 45677999999999999999999999886 89999999
Q ss_pred HHHHhcCchHHHHHHHccCCCCC-----------------------------------CCCchhHHHHHHHHHHHHHHHH
Q 017762 82 RIAEELDLSPLTDKLLRGKEQPY-----------------------------------TLSSSEKLELWDRLKILSFTKL 126 (366)
Q Consensus 82 ~I~~~ld~e~it~~Lk~~k~~~~-----------------------------------~l~~~~K~eLW~eLKi~sftR~ 126 (366)
+|++++|||+||++||++|+++. ..++++|+||||||||+||||+
T Consensus 78 ~i~~~ld~e~i~~~L~~~k~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~K~eLW~eLKi~sftR~ 157 (432)
T PF04882_consen 78 RILEELDVEEITEELKQKKAQRKARQAAQSDSESSDSELTSDNLSSASEANESSSKSSPLSPKSKLELWNELKIKSFTRT 157 (432)
T ss_dssp HHHHHS-HHHHHHHHCT---------------------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986432 2348999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-----------CCCCCCChHHHHHHHHHHHHHHHhhHHHHHH
Q 017762 127 VVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDL-----------PDADLIDRDDQQKFLASVDYLANYGMQAMIS 195 (366)
Q Consensus 127 ~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~~~~~l-----------~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~ 195 (366)
+|++|++|||+|+||+||||||||.|++|+...+++.. ......|.++||+||++||||||+||.++++
T Consensus 158 vt~iY~~slL~LltRvQLNILGR~~Yl~S~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~eq~fLs~swwLL~~Gw~~l~~ 237 (432)
T PF04882_consen 158 VTLIYALSLLTLLTRVQLNILGRRLYLDSVISLASEQENSNSSLISLESSSARGVDYETEQKFLSLSWWLLNRGWKELIE 237 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHTSSSSS---SS-----------HHHHHHHHGGGHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccccccccccccccHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999876543221 1112356899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhc--CC----CCccccccccccc-hhhhhhhcc---CCCCccccc
Q 017762 196 NVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS--MG----SPHQWVDFLMPQD-IRFYKLVTA---SGHDETTLS 265 (366)
Q Consensus 196 ~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~--~~----~~~~~~~~LLP~~-~~~~~~~~~---~~~~~~~~~ 265 (366)
+|+++|++||++++||+.+|++||++++++||..|++ .. ..++|++|||||. .+.+++..+ +++......
T Consensus 238 ~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~~~~~~~~~~~~~~~~~LLP~~~~e~~~L~~~~~~~~~~~~~~~ 317 (432)
T PF04882_consen 238 RVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVESSSDTSDSRPRSNWLSYLLPPEEEEDFVLQQTGDNPSSLSSLPQ 317 (432)
T ss_dssp HHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT------------CHHHCS----TTS-GGGTS-------TT--C
T ss_pred HHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHhhcCCccccchhhHHHhhCCCCchhHHHHHhcccccccccCCCC
Confidence 9999999999999999999999999999999999987 11 1467999999964 334444332 233333346
Q ss_pred chhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----------------CCCCCCcccchhhhhhh
Q 017762 266 GATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----------------SLISGMPLAKLVPRVVQ 328 (366)
Q Consensus 266 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----------------~~~~~~~LAklLP~v~~ 328 (366)
+++.|++|+|||+|+||||+|++|++.|+|++|+.+++++.+.+.+ .++.++||||+||++++
T Consensus 318 ~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LAklLp~l~~ 397 (432)
T PF04882_consen 318 DDSILRQLLDETRDVLESPDFSHVLESCLDEGFSTLMDNLEASFGSKSPSSPQSDLDQEEEVDIPKKKIPLAKLLPILNR 397 (432)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHCCG-----------------------EEEHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCCcccccCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999876621 12357999999999999
Q ss_pred hcccccCCCCchHHHHHHcCcchHHHHHHHHhcCC
Q 017762 329 MSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 363 (366)
Q Consensus 329 ~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~ 363 (366)
|+|.++.++.||+|++.|.+++||++|+|+||+||
T Consensus 398 q~~~i~~~~~~N~yl~~l~~v~eL~~fsA~VYsnF 432 (432)
T PF04882_consen 398 QSHVILNGPMPNEYLQRLNSVPELEDFSASVYSNF 432 (432)
T ss_dssp THHHHT-TT-TTCHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHccHHHHHHhHHHhhcC
Confidence 99999876669999999999999999999999987
No 2
>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-78 Score=566.89 Aligned_cols=346 Identities=30% Similarity=0.484 Sum_probs=302.6
Q ss_pred Cc-chhHHHHHhcCCeEEeeeeeeeeeehhHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 017762 1 ML-SLSDFWRRHRRKIFITTGVLGGGYLLYKLYDSQRRIADLDRQQCEHDELLKAQMQAHYEEVQRIADATTLPHAMHYL 79 (366)
Q Consensus 1 M~-s~~~f~~RhR~k~~~~~~v~G~~y~~~~y~~~~~kl~e~q~~~~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l 79 (366)
|+ +.|+|++|||||+|++|+++||||++++|+ ++++++.| ++..+|.|.++|+++||||||++|++||+ .++|++
T Consensus 1 ml~~~~~flkRHr~Kvivtg~lvGs~~~~~k~~--~r~~~~~q-er~a~E~~~qarrk~hFEStqrtcd~til-~llp~l 76 (359)
T KOG4444|consen 1 MLQRSWSFLKRHRGKVIVTGVLVGSGIVLVKYV--QRWLREQQ-EREAEEHFIQARRKYHFESTQRTCDQTIL-ELLPVL 76 (359)
T ss_pred CchhHHHHHHHhcCcEEEEEEEecceEEEEeee--chHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence 78 999999999999999999999999999995 45788765 23344778889999999999999999987 699999
Q ss_pred HHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017762 80 SIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGL 159 (366)
Q Consensus 80 ~~~I~~~ld~e~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~ 159 (366)
+.+|.+++|+|+|+++||++. .++|++|+||||||||.||||+++.+|++|||.+++|+||||||||.|+|++...
T Consensus 77 ~~~i~eeldvdsi~eqLkqk~----~Ltp~~KleLWeeLKI~sftrl~~~vysvsmLvl~lRvQlNILgr~iYlD~a~~l 152 (359)
T KOG4444|consen 77 RMAINEELDVDSIVEQLKQKN----QLTPKNKLELWEELKIKSFTRLVTVVYSVSMLVLLLRVQLNILGRYIYLDSAIKL 152 (359)
T ss_pred HHHHHHHcCHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 999999999999999999943 3789999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhcCCCCccc
Q 017762 160 GSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQW 239 (366)
Q Consensus 160 ~~~~l~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~ 239 (366)
.. .+.++.+.||+|||.+.||..+|+..++..++.+|.+|+++.++++.+|+-++++.+++|+..+|..++|++|
T Consensus 153 ~~-----v~l~~~dlqqqfls~i~~l~tdam~~la~~ik~~~qeVlk~~qlk~slS~~~Leq~~~qi~n~~e~~~dp~h~ 227 (359)
T KOG4444|consen 153 KM-----VQLNCNDLQQQFLSSITHLWTDAMVMLAKKIKKEVQEVLKNEQLKLSLSLWDLEQGWLQITNQIEIEFDPIHW 227 (359)
T ss_pred cc-----cccCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccHHHHhhHHHHHHHHHHHHHHHHhcCCCCch
Confidence 42 2446789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cccccchhhhhhhccCCCCcccccchhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCC-----C-
Q 017762 240 VD-FLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG-----S- 312 (366)
Q Consensus 240 ~~-~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~-----~- 312 (366)
.+ |++|+.+....-.+++.+|.+ .....+|.-||+++|+|++|+.|++.|++++ +++.++..+.+ .
T Consensus 228 ~dkylm~~qnt~ls~~as~~~d~d----vst~f~l~~Etrq~L~st~~stvle~sln~~---~~~~~g~~t~~~e~~~q~ 300 (359)
T KOG4444|consen 228 RDKYLMPFQNTPLSFLASGTSDAD----VSTSFHLNTETRQCLESTAFSTVLESSLNES---IMNKVGIKTIAKEKPLQE 300 (359)
T ss_pred HhhhcCCCCCCchhhHhccCChHH----HHHHHHHhHHHHHHhcchhHHHHHHHHHhhh---hhccccceeecccCcccc
Confidence 99 999985442221233334432 2455566679999999999999999999998 66666554411 1
Q ss_pred -----CCCCCcccchhhhhhhhcccccCCCCchHHHHHHcCcchHHHHHHHHhcCCCCC
Q 017762 313 -----LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS 366 (366)
Q Consensus 313 -----~~~~~~LAklLP~v~~~~~~l~~~~~~n~~l~~l~~~~el~~f~A~vYs~~~~~ 366 (366)
.....||||++|+++++.+.+..+|+.|+|+|.+..++++++|+|+||+||+-+
T Consensus 301 gn~~~~~v~~alAk~ip~ie~l~~~~tseps~n~flq~l~~~e~~kdl~anvye~f~~~ 359 (359)
T KOG4444|consen 301 GNQQYQMVVLALAKKIPIIEGLQTTATSEPSGNEFLQTLDSVEPLKDLSANVYENFSVS 359 (359)
T ss_pred cchHHHHHHHHHHHhhhhhhccccccccCCCcchHHHHHHhchhhhHHHhhhhhhccCC
Confidence 124689999999999999999988878999999999999999999999999853
No 3
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=66.22 E-value=1.3 Score=38.17 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=19.2
Q ss_pred HHHhcCCeEEeeeeeeeeeehhHhh
Q 017762 8 WRRHRRKIFITTGVLGGGYLLYKLY 32 (366)
Q Consensus 8 ~~RhR~k~~~~~~v~G~~y~~~~y~ 32 (366)
|.|.=+-++.|||++||||++++|.
T Consensus 5 w~~W~K~~~~G~~ii~~G~~l~~y~ 29 (128)
T PF07960_consen 5 WRRWAKMLVAGAVIIGGGPALVKYT 29 (128)
T ss_pred HHHHHHHHHhcceeEeechHHheec
Confidence 3455556778889999999999874
No 4
>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.88 E-value=6.1 Score=39.03 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcc
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDI 213 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ 213 (366)
+++.++++|||-|+.||. .|...++..+.+.+++|.
T Consensus 195 ~~qlk~slS~~~Leq~~~----qi~n~~e~~~dp~h~~dk 230 (359)
T KOG4444|consen 195 NEQLKLSLSLWDLEQGWL----QITNQIEIEFDPIHWRDK 230 (359)
T ss_pred cccHHHHhhHHHHHHHHH----HHHHHHHhcCCCCchHhh
Confidence 788999999999999999 566677888998888884
No 5
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=60.13 E-value=4.4 Score=39.91 Aligned_cols=28 Identities=18% Similarity=-0.038 Sum_probs=0.0
Q ss_pred chhHHHHHhcCCeEEeeeeeeeeeehhH
Q 017762 3 SLSDFWRRHRRKIFITTGVLGGGYLLYK 30 (366)
Q Consensus 3 s~~~f~~RhR~k~~~~~~v~G~~y~~~~ 30 (366)
.++.|+.||+.-+++..+++++.+++.+
T Consensus 210 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (334)
T PF09402_consen 210 QIRQFISRYRLIILGVLILLLLIKYIRY 237 (334)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988877777766654443
No 6
>PRK11677 hypothetical protein; Provisional
Probab=59.87 E-value=3.8 Score=35.62 Aligned_cols=14 Identities=7% Similarity=0.480 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhh
Q 017762 53 KAQMQAHYEEVQRI 66 (366)
Q Consensus 53 ke~lrr~FeqtQ~~ 66 (366)
|..+-.||.++-+-
T Consensus 49 kqeV~~HFa~TA~L 62 (134)
T PRK11677 49 RQELVSHFARSAEL 62 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777788865543
No 7
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.70 E-value=6.2 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHH
Q 017762 53 KAQMQAHYEEVQRIAD 68 (366)
Q Consensus 53 ke~lrr~FeqtQ~~c~ 68 (366)
|..+-.||++|-+--+
T Consensus 45 k~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 45 KQEVNDHFAQTAELLD 60 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677888987665543
No 8
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.15 E-value=26 Score=32.58 Aligned_cols=94 Identities=14% Similarity=0.293 Sum_probs=52.6
Q ss_pred chhHHHHHhcCCeEEeeeeeee-eeehhHhhHHHHHHHHHhHhHHHHHHHHH---------HHHHHHHHHHhhhHHHHhH
Q 017762 3 SLSDFWRRHRRKIFITTGVLGG-GYLLYKLYDSQRRIADLDRQQCEHDELLK---------AQMQAHYEEVQRIADATTL 72 (366)
Q Consensus 3 s~~~f~~RhR~k~~~~~~v~G~-~y~~~~y~~~~~kl~e~q~~~~~~e~~~k---------e~lrr~FeqtQ~~c~~t~l 72 (366)
++++||++|-+.|++ |+++|. |++-+|||..+ +....+.....-+.+.+ ...-.-|.+--....+-++
T Consensus 13 ~ik~wwkeNGk~li~-gviLg~~~lfGW~ywq~~-q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~l 90 (207)
T COG2976 13 AIKDWWKENGKALIV-GVILGLGGLFGWRYWQSH-QVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVL 90 (207)
T ss_pred HHHHHHHHCCchhHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHH
Confidence 689999999866555 566665 57777888654 33322211001122222 1122235443322233344
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHccC
Q 017762 73 PHAMHYLSIRIAEELDLSPLTDKLLRGK 100 (366)
Q Consensus 73 ~~llp~l~~~I~~~ld~e~it~~Lk~~k 100 (366)
. . -.+...-.+.-+.+.-..+|++..
T Consensus 91 a-a-L~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 91 A-A-LELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred H-H-HHHHHHHHhhccHHHHHHHHHHHH
Confidence 2 2 245667778889999999999754
No 9
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=54.92 E-value=4 Score=37.07 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=0.0
Q ss_pred eEEeeeeeeeeeehhHh
Q 017762 15 IFITTGVLGGGYLLYKL 31 (366)
Q Consensus 15 ~~~~~~v~G~~y~~~~y 31 (366)
+++|+.++||||++||-
T Consensus 50 l~vG~t~~gag~YaYkT 66 (180)
T PF14962_consen 50 LVVGVTVSGAGYYAYKT 66 (180)
T ss_dssp -----------------
T ss_pred EEECeEEEeeEEEEEEe
Confidence 56778889999999974
No 10
>PF15054 DUF4535: Domain of unknown function (DUF4535)
Probab=29.63 E-value=35 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.2
Q ss_pred cCCeEEeeeeeeeeeehhHh
Q 017762 12 RRKIFITTGVLGGGYLLYKL 31 (366)
Q Consensus 12 R~k~~~~~~v~G~~y~~~~y 31 (366)
|.-|.+++|++.|+|++.+|
T Consensus 1 r~~fsF~~G~~~GiY~AQNY 20 (46)
T PF15054_consen 1 RSLFSFGAGTYTGIYVAQNY 20 (46)
T ss_pred CceEEEeeccEEEEEeeecc
Confidence 45577888999999998876
No 11
>PRK01381 Trp operon repressor; Provisional
Probab=28.97 E-value=38 Score=27.95 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=36.4
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHH
Q 017762 187 NYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL 227 (366)
Q Consensus 187 ~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~ 227 (366)
+.||..+++.++.+.+...-..-+.+.+|.+|...+-.+++
T Consensus 6 ~~~W~~~v~ll~~a~~~~~~~~~l~~llTp~Er~al~~R~~ 46 (99)
T PRK01381 6 NQEWQRFVDLLKQAFEEDLHLPLLTLLLTPDEREALGTRVR 46 (99)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 47999999999999999888888889999999999988754
No 12
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=28.84 E-value=76 Score=33.36 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHhhc----C--------HhHHHHHHHHHHHHHHHHH------------HHHHhhcC-CCCCCCCccc
Q 017762 266 GATKFDELMVETRAVLS----S--------AEYTSVVDMSFKAAVDALI------------DEMRVQSG-GSLISGMPLA 320 (366)
Q Consensus 266 ~~~~l~~Ll~ET~d~le----S--------~~f~~Vl~~~l~~~f~~l~------------~~~~~~~~-~~~~~~~~LA 320 (366)
+++.|+++|+|.+|+.. + +.|...+..|+.-.-.++- +.+.+-|. .....+-.+|
T Consensus 120 sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkqmVIPdw~~Fts~I~tIFEscke~seG~vA 199 (622)
T KOG0506|consen 120 SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQMVIPDWEEFTSHIDTIFESCKESSEGKVA 199 (622)
T ss_pred CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcCccCCcHHHHHHHHHHHHHHHHhcCCccHH
Confidence 45899999999999873 2 4555554444433322221 22222220 0112345799
Q ss_pred chhhhhhhhcccccC
Q 017762 321 KLVPRVVQMSPSLLA 335 (366)
Q Consensus 321 klLP~v~~~~~~l~~ 335 (366)
..||.++++++.+++
T Consensus 200 ~YIPQLar~sPdlW~ 214 (622)
T KOG0506|consen 200 TYIPQLARQSPDLWG 214 (622)
T ss_pred HhhHHHhccCCccce
Confidence 999999999998764
No 13
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=28.61 E-value=98 Score=20.20 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q 017762 49 DELLKAQMQAHYEEVQRIA 67 (366)
Q Consensus 49 e~~~ke~lrr~FeqtQ~~c 67 (366)
-+--+||++.+.+|.++.|
T Consensus 13 Lrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3334589999999999988
No 14
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=25.65 E-value=2.7e+02 Score=23.19 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhhhhhh-hcccccCCCCc------h
Q 017762 268 TKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQ-MSPSLLAEPSN------N 340 (366)
Q Consensus 268 ~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~~~~~~~LAklLP~v~~-~~~~l~~~~~~------n 340 (366)
+.-+..++|+.+.+.+|+...=++...+.+-+.++..|. .++|++.. |.+++-.-|.| =
T Consensus 5 e~ak~~l~eil~a~~~peN~~kl~eAk~~agndm~k~mq--------------~v~Pva~qiq~~VIk~yGF~~~~eG~~ 70 (105)
T PF14974_consen 5 EQAKAILTEILDAFNQPENAAKLEEAKANAGNDMLKMMQ--------------FVFPVATQIQMEVIKKYGFPESREGVM 70 (105)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHhccchHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCcchHH
Confidence 455788999999999999998887777665555554443 45665554 33443222222 2
Q ss_pred HHHHHHc----CcchHHHHHHHHh
Q 017762 341 RIIQVIR----TIPEVELFFTLLY 360 (366)
Q Consensus 341 ~~l~~l~----~~~el~~f~A~vY 360 (366)
+|.+.+. .-+|+.+++.-+=
T Consensus 71 ~f~~~i~~~e~~D~eva~l~~~iR 94 (105)
T PF14974_consen 71 QFAQLIRELEKDDPEVARLHSQIR 94 (105)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 4555443 4577777766553
No 15
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=24.90 E-value=26 Score=25.52 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=9.8
Q ss_pred eeeeeeeeehhHh
Q 017762 19 TGVLGGGYLLYKL 31 (366)
Q Consensus 19 ~~v~G~~y~~~~y 31 (366)
++.+|.||++||-
T Consensus 20 va~~G~gY~iYR~ 32 (54)
T PF15654_consen 20 VAGVGAGYLIYRG 32 (54)
T ss_pred eeecchhhhhhhH
Confidence 4566888999974
No 16
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.78 E-value=18 Score=26.14 Aligned_cols=11 Identities=55% Similarity=1.356 Sum_probs=10.0
Q ss_pred HHHHHhcCCeE
Q 017762 6 DFWRRHRRKIF 16 (366)
Q Consensus 6 ~f~~RhR~k~~ 16 (366)
+|+++||.|++
T Consensus 2 e~~~~~~~~ii 12 (51)
T PF10031_consen 2 EFWKNHRGKII 12 (51)
T ss_pred hHHHHCcchHH
Confidence 68999999988
No 17
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=20.67 E-value=34 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.0
Q ss_pred CCeEEeeeeeeeeeehhH
Q 017762 13 RKIFITTGVLGGGYLLYK 30 (366)
Q Consensus 13 ~k~~~~~~v~G~~y~~~~ 30 (366)
+|++|...+.|++|+..+
T Consensus 2 Kkl~i~L~l~ga~f~~fK 19 (33)
T PF10855_consen 2 KKLAIILILGGAAFYGFK 19 (33)
T ss_pred CceeehhhhhhHHHHHHH
Confidence 578887777888888775
No 18
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.37 E-value=2.8e+02 Score=21.16 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017762 124 TKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR 157 (366)
Q Consensus 124 tR~~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~ 157 (366)
.=.|-+.|++++|.+..=+=-+++-|+.||..+.
T Consensus 16 afyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~ 49 (67)
T COG3114 16 AFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVA 49 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999998774
Done!