Query 017762
Match_columns 366
No_of_seqs 135 out of 198
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk4_A Peroxisomal biogenesis 100.0 1.2E-83 3.9E-88 627.5 28.8 302 46-365 5-328 (334)
2 1c4z_A E6AP, ubiquitin-protein 26.0 1.2E+02 0.004 29.1 6.6 56 169-224 187-243 (358)
3 1fi6_A EH domain protein REPS1 24.1 1.6E+02 0.0055 21.5 5.8 40 207-246 53-92 (92)
4 2knc_B Integrin beta-3; transm 22.2 27 0.00094 26.3 0.9 18 45-62 41-58 (79)
5 1eh2_A EPS15; calcium binding, 19.0 2.3E+02 0.008 21.7 5.9 47 201-247 50-98 (106)
6 2h7b_A Core-binding factor, ML 17.6 2.9E+02 0.0098 21.9 6.0 47 175-226 9-55 (105)
7 3r2k_A Bacterioferritin, BFR; 17.6 96 0.0033 25.0 3.5 33 174-206 21-53 (154)
8 3uoi_A Bacterioferritin, BFR; 15.5 1.2E+02 0.0042 24.5 3.7 34 174-207 23-56 (161)
9 1oeg_A Apolipoprotein E; siali 14.3 62 0.0021 19.3 1.0 16 187-202 7-22 (26)
10 2kgr_A Intersectin-1; structur 13.6 3.6E+02 0.012 20.4 5.8 41 207-247 58-98 (111)
No 1
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Probab=100.00 E-value=1.2e-83 Score=627.49 Aligned_cols=302 Identities=26% Similarity=0.397 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHhcCchHHHHHHHccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 017762 46 CEHDELLKAQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTK 125 (366)
Q Consensus 46 ~~~e~~~ke~lrr~FeqtQ~~c~~t~l~~llp~l~~~I~~~ld~e~it~~Lk~~k~~~~~l~~~~K~eLW~eLKi~sftR 125 (366)
...|.++|+|+++||||||+||++||+ +++|+++++|++++|+|+||++||++ |++|+||||||||+||||
T Consensus 5 ~~~e~~~~ar~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR 75 (334)
T 3mk4_A 5 EAAEYIAQARRQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTR 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999886 99999999999999999999999985 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 017762 126 LVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEAL 205 (366)
Q Consensus 126 ~~t~iY~~slL~Ll~rvQLNiLgr~~Yl~s~~~~~~~~l~~~~~~d~~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf 205 (366)
++|++|++|||+++||+||||||||.|++++....++ ....+|.++||+||++||||+|+||.+++++|+++|+++|
T Consensus 76 ~~t~iY~~slL~ll~RvQLNILGr~~Yl~sa~~~~~~---~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v~ 152 (334)
T 3mk4_A 76 STVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG---TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVL 152 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997532221 1245789999999999999999999999999999999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHHHhcC---------CCCccccccccccchhhhhhhccCCCCcccccchhHHHHHHHH
Q 017762 206 KGKQLRDIFNTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVE 276 (366)
Q Consensus 206 ~~~~lk~~ls~~el~~l~~~i~~~~e~~---------~~~~~~~~~LLP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~E 276 (366)
++++|||.+|+++|++++++||..+++. ++.+.|++||||++.... ++.+++ ...+++.|++|+||
T Consensus 153 ~~~~lk~~ls~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~~-~~q~~~----~~~~~~~l~~Ll~E 227 (334)
T 3mk4_A 153 GSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETPL-AVQACG----LSPRDITTIKLLNE 227 (334)
T ss_dssp TTCCSSCEEEHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC-------------CCHHHHHHHHHHHH
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhHH-HHhccC----CCCccHHHHHHHHH
Confidence 9999999999999999999999999873 234789999999975432 222111 12345789999999
Q ss_pred HHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCcccchhhhhhhhcccccCCCCchHHH
Q 017762 277 TRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRII 343 (366)
Q Consensus 277 T~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAklLP~v~~~~~~l~~~~~~n~~l 343 (366)
|+|+||||+|++|++.|+|++|+.++|++++.|++. +..++||||+||+++||+|.++ +|.||+|+
T Consensus 228 T~d~leS~~f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~-~~~pN~~l 306 (334)
T 3mk4_A 228 TRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC-SETPSHFV 306 (334)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHT-CCSTTSHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhcc-cCCchHHH
Confidence 999999999999999999999999999998877321 1368999999999999999776 46899999
Q ss_pred HHHcCcchHHHHHHHHhcCCCC
Q 017762 344 QVIRTIPEVELFFTLLYANMSD 365 (366)
Q Consensus 344 ~~l~~~~el~~f~A~vYs~~~~ 365 (366)
|.|.++++|++|||+||++|+.
T Consensus 307 q~l~~~~el~~f~A~VY~sf~~ 328 (334)
T 3mk4_A 307 QDLLTMEQVKDFAANVYEAFST 328 (334)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999999864
No 2
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=25.98 E-value=1.2e+02 Score=29.05 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 017762 169 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFM 224 (366)
Q Consensus 169 ~~d~~~eq~yLs~-s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~ 224 (366)
.++.++-+.|..+ +.|.+++|+.+-++..++...+|+..-.++..++.+|++.++.
T Consensus 187 ~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~ 243 (358)
T 1c4z_A 187 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 243 (358)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhh
Confidence 4678899999986 7899999999999999999999998767776789999988775
No 3
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.10 E-value=1.6e+02 Score=21.47 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCCcccccccccc
Q 017762 207 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQ 246 (366)
Q Consensus 207 ~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~ 246 (366)
+.+-...++++||...+..+.....+..-|..+-..|+||
T Consensus 53 D~d~dG~i~~~EF~~~~~~~~~~~~g~~lp~~lp~~l~p~ 92 (92)
T 1fi6_A 53 DFDKDGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPK 92 (92)
T ss_dssp CTTCSSEEEHHHHHHHHHHHHHHHHSCCCCCCSCSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccCCHhhCCC
Confidence 4455667999999999988877666544456677777775
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.19 E-value=27 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017762 45 QCEHDELLKAQMQAHYEE 62 (366)
Q Consensus 45 ~~~~e~~~ke~lrr~Feq 62 (366)
+||-++|-+|+.+..++.
T Consensus 41 rrE~~kFEkE~~~~~w~~ 58 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDT 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccc
Confidence 456677778888777754
No 5
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=18.97 E-value=2.3e+02 Score=21.65 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=33.9
Q ss_pred HHHHhc--CCCCCcccCHHHHHHHHHHHHHHHhcCCCCccccccccccc
Q 017762 201 ADEALK--GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQD 247 (366)
Q Consensus 201 V~~vf~--~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~~ 247 (366)
+.+++. +.+=...++++||...+..+.....+..-|..+-+.|+||.
T Consensus 50 l~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~LP~~l~pps 98 (106)
T 1eh2_A 50 LGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPS 98 (106)
T ss_dssp HHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSSCCTTTSCTT
T ss_pred HHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCCCCcccCChh
Confidence 444443 45556689999999999998888776545667777777774
No 6
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=17.65 E-value=2.9e+02 Score=21.92 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHH
Q 017762 175 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI 226 (366)
Q Consensus 175 eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i 226 (366)
=++||+----|-.+-=+++.++|++-|...+.+ .++.+||..-+.+.
T Consensus 9 ck~FL~tLi~la~~~~pev~~~Vr~LVq~Ll~~-----~i~~EeFt~~Lq~~ 55 (105)
T 2h7b_A 9 LKRFLTTLQQFGNDISPEIGERVRTLVLGLVNS-----TLTIEEFHSKLQEA 55 (105)
T ss_dssp HHHHHHHHHHSHHHHCHHHHHHHHHHHHHHHTS-----SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 367888665566666788899999999998754 78889988766554
No 7
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=17.56 E-value=96 Score=25.03 Aligned_cols=33 Identities=6% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 206 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~ 206 (366)
.-.+|++++||+=+.|+..+....+....++.+
T Consensus 21 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~ 53 (154)
T 3r2k_A 21 ARDQYFIHSRMYEDWGFSKLYERLNHEMEEETQ 53 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999988887644
No 8
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=15.45 E-value=1.2e+02 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 207 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 207 (366)
.-.+|++++||+=+.|+..+.+..+....+..++
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~H 56 (161)
T 3uoi_A 23 AINQYFLHSKMQDNWGFTELAAHTRAESFDEMRH 56 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999888776543
No 9
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=14.27 E-value=62 Score=19.34 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHH
Q 017762 187 NYGMQAMISNVQAAAD 202 (366)
Q Consensus 187 ~~G~~~l~~~V~~~V~ 202 (366)
.+-|..+++.|+++|.
T Consensus 7 r~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 7 QRQWAGLVEKVQAAVG 22 (26)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4678899999988864
No 10
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=13.60 E-value=3.6e+02 Score=20.43 Aligned_cols=41 Identities=7% Similarity=-0.054 Sum_probs=30.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCCccccccccccc
Q 017762 207 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQD 247 (366)
Q Consensus 207 ~~~lk~~ls~~el~~l~~~i~~~~e~~~~~~~~~~~LLP~~ 247 (366)
+.+=...++++||..++..+.....+..-|..+...|+||.
T Consensus 58 D~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~lp~~l~pps 98 (111)
T 2kgr_A 58 DIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPS 98 (111)
T ss_dssp CSSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSCCGGGSCTT
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHCCCCCccccCcccCCCc
Confidence 34455679999999999888877666444566677777774
Done!