Query 017762
Match_columns 366
No_of_seqs 135 out of 198
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 04:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017762.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017762hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgca_ a.25.1.1 (A:) Bacterio 16.7 51 0.0037 25.2 3.7 32 174-205 21-52 (160)
2 d2fkza1 a.25.1.1 (A:1-154) Bac 13.8 69 0.005 24.0 3.7 34 174-207 21-54 (154)
3 d1yuza1 a.25.1.1 (A:23-157) Ni 12.6 65 0.0047 23.7 3.1 35 173-207 20-54 (135)
4 d2p6va1 a.277.1.1 (A:582-678) 12.5 2.3E+02 0.017 20.3 6.0 47 175-226 14-62 (97)
5 d1lkoa1 a.25.1.1 (A:2-147) Rub 11.9 83 0.006 23.4 3.6 35 173-207 21-55 (146)
6 d1jhga_ a.4.12.1 (A:) Trp repr 11.5 62 0.0045 23.7 2.5 46 181-227 4-49 (101)
7 d1c4za_ d.148.1.1 (A:) Ubiquit 10.8 2.1E+02 0.016 24.3 6.6 56 169-224 185-241 (350)
8 d1xhca2 c.3.1.5 (A:104-225) NA 9.6 41 0.003 24.6 0.8 22 3-24 24-45 (122)
9 d1seda_ a.219.1.1 (A:) Hypothe 9.3 1.5E+02 0.011 21.8 4.0 52 47-99 41-94 (112)
10 d1nf4a_ a.25.1.1 (A:) Bacterio 8.7 1E+02 0.0075 23.4 3.1 34 174-207 23-56 (169)
No 1
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=16.67 E-value=51 Score=25.18 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEAL 205 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf 205 (366)
.-..|+..+||+=+.|+..+.+..+....+.+
T Consensus 21 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~ 52 (160)
T d1jgca_ 21 AISQYWVHFRLQEDWGLAKMAKKSREESIEEM 52 (160)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999888875
No 2
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=13.78 E-value=69 Score=24.02 Aligned_cols=34 Identities=6% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 207 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 207 (366)
.-..|+..+||+=+.|+..+.+..+....+.+++
T Consensus 21 A~~~Y~~~a~~~~~~~~~~la~~f~~~a~eE~~H 54 (154)
T d2fkza1 21 AINQYFLHARMYEDWGLEKLGKHEYHESIDEMKH 54 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999888776543
No 3
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=12.56 E-value=65 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017762 173 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 207 (366)
Q Consensus 173 ~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 207 (366)
..-.+||.++.|.-..|.+.+.+..+....+..++
T Consensus 20 ~A~~~Yl~~A~~~~~~g~~~ia~~f~~~A~eE~~H 54 (135)
T d1yuza1 20 GAHAKYTAFAKAAREQGYEQIARLFEATAAAELIH 54 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHCCChHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999988887654
No 4
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.49 E-value=2.3e+02 Score=20.27 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHH
Q 017762 175 QQKFLASVDYLANY-GM-QAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI 226 (366)
Q Consensus 175 eq~yLs~s~~ll~~-G~-~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i 226 (366)
=++||+----|-.+ +. ++..++|+.-|...+.+ .++.+||..-+.+.
T Consensus 14 ck~FL~tLi~l~s~~~~spe~~~~Vr~LV~~L~~~-----~i~~EEF~~~Lq~~ 62 (97)
T d2p6va1 14 CKNFLSTLIKLASSGKQSTETAANVKELVQNLLDG-----KIEAEDFTSRLYRE 62 (97)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHH
Confidence 35777765555554 33 88899999999998765 68889988776654
No 5
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.90 E-value=83 Score=23.37 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017762 173 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 207 (366)
Q Consensus 173 ~~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 207 (366)
....+|+.++.|.=+.|++.+....+....+..++
T Consensus 21 ~A~~~Y~~~A~~a~~~g~~~ia~~f~~~A~eE~~H 55 (146)
T d1lkoa1 21 QARNRYNYFGGQAKKDGFVQISDIFAETADQEREH 55 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999888876654
No 6
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=11.47 E-value=62 Score=23.70 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=35.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHH
Q 017762 181 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL 227 (366)
Q Consensus 181 ~s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~~i~ 227 (366)
++.| -+..|.++++.+..+..+-.-..=+++-+|.+|+..+-.++.
T Consensus 4 m~~~-~~~~w~~f~~ll~~~~~~~~~~~fl~dLlT~~E~~~la~R~~ 49 (101)
T d1jhga_ 4 MAEQ-RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVR 49 (101)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555 568899999999988877555555788899999998887653
No 7
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=2.1e+02 Score=24.31 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 017762 169 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFM 224 (366)
Q Consensus 169 ~~d~~~eq~yLs~-s~~ll~~G~~~l~~~V~~~V~~vf~~~~lk~~ls~~el~~l~~ 224 (366)
.++.++-+.|+.. ..|.++++...-++.+++...+++..-.++..++.+|++.++.
T Consensus 185 ~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~ 241 (350)
T d1c4za_ 185 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 241 (350)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHHHhhC
Confidence 3577889999985 7899999999999999999999998877877789988887754
No 8
>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.62 E-value=41 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=14.6
Q ss_pred chhHHHHHhcCCeEEeeeeeee
Q 017762 3 SLSDFWRRHRRKIFITTGVLGG 24 (366)
Q Consensus 3 s~~~f~~RhR~k~~~~~~v~G~ 24 (366)
.++++++..++-+++|||.+|-
T Consensus 24 ~l~~~~~~~~~vvIiGgG~iG~ 45 (122)
T d1xhca2 24 RIKESIENSGEAIIIGGGFIGL 45 (122)
T ss_dssp HHHHHHHHHSEEEEEECSHHHH
T ss_pred HHHHHhhcCCcEEEECCcHHHH
Confidence 3567777777766666666654
No 9
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=9.31 E-value=1.5e+02 Score=21.80 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHHHH--HHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHhcCchHHHHHHHcc
Q 017762 47 EHDELLK--AQMQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRG 99 (366)
Q Consensus 47 ~~e~~~k--e~lrr~FeqtQ~~c~~t~l~~llp~l~~~I~~~ld~e~it~~Lk~~ 99 (366)
+.+++.+ +++..++++--..-. ++...|+-.....+-..+|+++++++|.++
T Consensus 41 eve~~~~lCeeL~~q~~~QKaeGf-v~F~~Ll~~Fag~L~~~L~v~eti~Al~~Q 94 (112)
T d1seda_ 41 EGEAVMRICDELSEELATQKAQGF-VTFDKLLALFAGQLNEKLDVHETIFALYEQ 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHSCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHhhccccCCHHHHHHHHHHc
Confidence 4455555 778877765555544 333578889999999999999999998764
No 10
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=8.69 E-value=1e+02 Score=23.43 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 017762 174 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 207 (366)
Q Consensus 174 ~eq~yLs~s~~ll~~G~~~l~~~V~~~V~~vf~~ 207 (366)
.-..|+.++||+-+.|...+.+..+....+..++
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~~H 56 (169)
T d1nf4a_ 23 AIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRH 56 (169)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999887776543
Done!