BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017764
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGIN 144
           L G +   + + T++  I L NN  +G IP               +N+FSG +P +LG  
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534

Query: 145 HSLTILLLDNNDFVGSLSPEIYK 167
            SL  L L+ N F G++   ++K
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFK 557



 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPL 137
           L L++    G + P + + + + S+ L  N  SG IP                N   G +
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455

Query: 138 PNDLGINHSLTILLLDNNDFVGSL 161
           P +L    +L  L+LD ND  G +
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEI 479



 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPL 137
           LNL    + G++  E+  L  +  + L +N   G IP               +NN SGP+
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717

Query: 138 P 138
           P
Sbjct: 718 P 718


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGIN 144
           L G +   + + T++  I L NN  +G IP               +N+FSG +P +LG  
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 145 HSLTILLLDNNDFVGSLSPEIYK 167
            SL  L L+ N F G++   ++K
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFK 560



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPL 137
           L L++    G + P + + + + S+ L  N  SG IP                N   G +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 138 PNDLGINHSLTILLLDNNDFVGSL 161
           P +L    +L  L+LD ND  G +
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEI 482



 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPL 137
           LNL    + G++  E+  L  +  + L +N   G IP               +NN SGP+
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 138 P 138
           P
Sbjct: 721 P 721


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 64  SWFGVECSDG----KVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRN-NSFSGIIPXX 116
           +W GV C       +V NL+L  L L     +   + +L ++  + +   N+  G IP  
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 117 XXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
                        H N SG +P+ L    +L  L    N   G+L P I  L  L     
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 177 DEGQLSSAAKKEQSCYER 194
           D  ++S A       + +
Sbjct: 157 DGNRISGAIPDSYGSFSK 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,550,950
Number of Sequences: 62578
Number of extensions: 239249
Number of successful extensions: 426
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 20
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)