Query 017764
Match_columns 366
No_of_seqs 442 out of 3410
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1E-21 2.2E-26 213.3 16.8 162 23-188 22-207 (968)
2 PLN03150 hypothetical protein; 99.9 8.8E-21 1.9E-25 195.8 17.5 149 26-182 368-528 (623)
3 PLN00113 leucine-rich repeat r 99.7 2.7E-16 5.9E-21 171.0 13.3 114 73-187 452-565 (968)
4 PLN03150 hypothetical protein; 99.3 2.5E-12 5.3E-17 133.3 7.9 92 98-189 419-510 (623)
5 KOG0617 Ras suppressor protein 99.3 5.3E-14 1.1E-18 118.9 -4.3 108 72-182 32-140 (264)
6 KOG0617 Ras suppressor protein 99.2 6.5E-13 1.4E-17 112.4 -1.9 111 73-187 56-167 (264)
7 KOG0472 Leucine-rich repeat pr 99.1 1.9E-11 4.1E-16 115.5 0.8 106 74-182 436-541 (565)
8 KOG4194 Membrane glycoprotein 99.0 3E-11 6.5E-16 118.9 -1.6 153 74-229 318-492 (873)
9 KOG4194 Membrane glycoprotein 99.0 3.7E-11 8.1E-16 118.2 -1.6 113 73-185 269-381 (873)
10 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9.2E-15 97.6 4.2 104 74-182 20-126 (175)
11 KOG0444 Cytoskeletal regulator 99.0 1.1E-10 2.4E-15 115.7 0.1 107 73-182 126-258 (1255)
12 KOG0444 Cytoskeletal regulator 98.9 1.6E-10 3.4E-15 114.6 -0.5 107 73-182 78-186 (1255)
13 KOG0472 Leucine-rich repeat pr 98.9 1.1E-10 2.3E-15 110.6 -3.3 111 76-191 186-297 (565)
14 KOG0618 Serine/threonine phosp 98.8 6.6E-10 1.4E-14 114.6 -0.0 103 73-180 383-487 (1081)
15 PF08263 LRRNT_2: Leucine rich 98.8 5.7E-09 1.2E-13 69.0 4.1 41 29-71 2-43 (43)
16 KOG4237 Extracellular matrix p 98.8 3.3E-09 7.1E-14 100.4 3.3 136 86-231 262-399 (498)
17 PRK15387 E3 ubiquitin-protein 98.8 1.1E-08 2.5E-13 107.1 6.9 62 121-187 402-463 (788)
18 PF13855 LRR_8: Leucine rich r 98.7 6.2E-09 1.3E-13 74.3 3.1 40 141-180 21-60 (61)
19 PF13855 LRR_8: Leucine rich r 98.7 4.8E-09 1E-13 74.9 2.5 61 97-157 1-61 (61)
20 KOG1259 Nischarin, modulator o 98.7 3E-09 6.4E-14 97.6 -0.2 102 75-182 286-387 (490)
21 KOG0532 Leucine-rich repeat (L 98.7 1.6E-09 3.4E-14 106.7 -2.2 117 74-197 144-260 (722)
22 KOG0618 Serine/threonine phosp 98.7 1.5E-09 3.3E-14 111.9 -3.3 106 74-183 360-466 (1081)
23 KOG0532 Leucine-rich repeat (L 98.6 4.6E-09 9.9E-14 103.5 -0.1 106 74-186 122-227 (722)
24 PRK15370 E3 ubiquitin-protein 98.6 1.2E-07 2.7E-12 99.7 8.1 97 74-182 179-275 (754)
25 KOG4237 Extracellular matrix p 98.5 7.6E-09 1.6E-13 98.0 -1.6 108 74-182 68-177 (498)
26 cd00116 LRR_RI Leucine-rich re 98.5 2.6E-08 5.6E-13 94.4 1.5 110 73-182 81-206 (319)
27 cd00116 LRR_RI Leucine-rich re 98.5 2.7E-08 5.9E-13 94.2 1.7 110 74-183 109-235 (319)
28 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.4E-13 93.9 -1.1 115 65-185 293-415 (490)
29 PLN03210 Resistant to P. syrin 98.5 2.9E-07 6.2E-12 102.2 9.5 104 74-180 612-715 (1153)
30 PRK15370 E3 ubiquitin-protein 98.5 3.3E-07 7.2E-12 96.5 9.4 102 73-187 199-300 (754)
31 PF14580 LRR_9: Leucine-rich r 98.5 9.3E-08 2E-12 83.0 4.3 87 92-183 14-102 (175)
32 PLN03210 Resistant to P. syrin 98.5 7.3E-07 1.6E-11 99.0 10.8 112 74-189 590-701 (1153)
33 PRK15387 E3 ubiquitin-protein 98.3 1.6E-06 3.4E-11 91.3 8.9 53 74-134 223-275 (788)
34 COG4886 Leucine-rich repeat (L 98.3 3.3E-07 7.2E-12 89.9 2.9 103 74-180 117-220 (394)
35 KOG1859 Leucine-rich repeat pr 98.2 6.9E-08 1.5E-12 97.7 -3.5 102 75-183 166-268 (1096)
36 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.2E-12 78.3 -2.3 87 74-164 54-141 (177)
37 KOG4658 Apoptotic ATPase [Sign 98.1 1.2E-06 2.6E-11 93.8 2.5 106 73-180 545-653 (889)
38 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 5.8E-12 75.8 -2.3 104 75-182 29-136 (177)
39 COG4886 Leucine-rich repeat (L 98.0 3.1E-06 6.7E-11 83.1 3.7 112 75-191 188-299 (394)
40 PF12799 LRR_4: Leucine Rich r 98.0 7.6E-06 1.7E-10 54.2 3.6 36 146-182 2-37 (44)
41 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 54.5 3.1 36 122-158 2-37 (44)
42 KOG1859 Leucine-rich repeat pr 97.8 6.2E-07 1.3E-11 91.0 -5.9 104 73-182 187-292 (1096)
43 KOG0531 Protein phosphatase 1, 97.8 9.9E-06 2.2E-10 80.3 1.8 104 73-182 95-199 (414)
44 KOG0531 Protein phosphatase 1, 97.7 8.1E-06 1.7E-10 80.9 0.6 107 74-186 73-179 (414)
45 KOG4658 Apoptotic ATPase [Sign 97.6 4.9E-05 1.1E-09 81.6 3.8 110 74-186 524-635 (889)
46 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.9E-09 63.8 4.3 80 76-158 45-126 (233)
47 KOG3207 Beta-tubulin folding c 97.4 4.4E-05 9.4E-10 73.8 0.6 107 74-181 198-313 (505)
48 KOG3207 Beta-tubulin folding c 97.3 6.5E-05 1.4E-09 72.6 1.0 109 73-183 222-340 (505)
49 KOG1644 U2-associated snRNP A' 97.3 0.00033 7.1E-09 61.4 5.1 101 76-182 22-126 (233)
50 KOG2739 Leucine-rich acidic nu 96.8 0.00086 1.9E-08 61.0 3.2 64 93-158 61-129 (260)
51 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.7E-08 69.2 2.4 107 74-182 149-263 (699)
52 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3E-08 59.6 2.2 91 89-183 35-130 (260)
53 KOG2123 Uncharacterized conser 96.5 0.00013 2.9E-09 66.8 -4.7 97 74-175 20-123 (388)
54 KOG2982 Uncharacterized conser 96.3 0.0011 2.4E-08 61.4 0.3 82 74-155 72-156 (418)
55 KOG1909 Ran GTPase-activating 96.3 0.001 2.2E-08 62.8 -0.0 109 74-182 186-311 (382)
56 KOG3665 ZYG-1-like serine/thre 96.2 0.0017 3.6E-08 68.3 1.3 108 73-182 122-233 (699)
57 PRK15386 type III secretion pr 96.2 0.012 2.6E-07 57.7 7.0 96 73-182 52-169 (426)
58 KOG1909 Ran GTPase-activating 96.2 0.0031 6.7E-08 59.6 2.7 109 73-182 92-226 (382)
59 KOG2982 Uncharacterized conser 96.1 0.0014 3.1E-08 60.7 0.1 88 95-182 69-159 (418)
60 KOG0473 Leucine-rich repeat pr 96.1 0.00015 3.2E-09 64.9 -6.2 82 74-158 43-124 (326)
61 KOG0473 Leucine-rich repeat pr 95.7 0.0002 4.3E-09 64.1 -7.2 89 91-182 36-124 (326)
62 PF00560 LRR_1: Leucine Rich R 95.7 0.0036 7.8E-08 34.7 0.3 18 147-165 2-19 (22)
63 PF00560 LRR_1: Leucine Rich R 95.6 0.0048 1E-07 34.2 0.7 18 99-117 2-19 (22)
64 PRK15386 type III secretion pr 95.5 0.027 5.8E-07 55.3 6.1 94 73-179 72-187 (426)
65 COG5238 RNA1 Ran GTPase-activa 95.4 0.029 6.2E-07 51.7 5.4 109 73-182 92-227 (388)
66 KOG1924 RhoA GTPase effector D 95.2 0.084 1.8E-06 54.7 8.3 8 148-155 409-416 (1102)
67 PF04478 Mid2: Mid2 like cell 95.0 0.027 5.8E-07 47.1 3.7 15 306-320 44-58 (154)
68 COG5238 RNA1 Ran GTPase-activa 94.4 0.043 9.4E-07 50.6 3.8 107 74-182 31-170 (388)
69 PF02439 Adeno_E3_CR2: Adenovi 94.1 0.026 5.7E-07 35.4 1.2 30 309-338 5-34 (38)
70 TIGR00864 PCC polycystin catio 93.4 0.049 1.1E-06 63.9 2.8 73 151-229 1-74 (2740)
71 PF13306 LRR_5: Leucine rich r 93.3 0.2 4.3E-06 40.4 5.5 99 74-178 13-112 (129)
72 KOG2123 Uncharacterized conser 92.9 0.0071 1.5E-07 55.8 -4.0 86 96-186 18-105 (388)
73 KOG2120 SCF ubiquitin ligase, 92.6 0.019 4E-07 53.6 -1.7 37 144-180 312-349 (419)
74 PF13504 LRR_7: Leucine rich r 92.2 0.088 1.9E-06 27.2 1.2 10 147-156 3-12 (17)
75 PF08693 SKG6: Transmembrane a 91.8 0.19 4.1E-06 32.2 2.7 27 306-332 7-33 (40)
76 KOG2120 SCF ubiquitin ligase, 91.6 0.0082 1.8E-07 55.9 -5.3 86 98-183 186-274 (419)
77 PF06809 NPDC1: Neural prolife 91.5 1.3 2.7E-05 41.6 8.8 37 309-345 197-236 (341)
78 PF01034 Syndecan: Syndecan do 91.2 0.063 1.4E-06 38.0 0.1 26 310-335 12-37 (64)
79 PF01102 Glycophorin_A: Glycop 91.1 0.089 1.9E-06 42.7 0.8 25 309-334 66-90 (122)
80 PF08374 Protocadherin: Protoc 90.5 0.2 4.2E-06 44.3 2.5 27 307-333 34-61 (221)
81 PF13306 LRR_5: Leucine rich r 90.4 0.65 1.4E-05 37.3 5.4 85 92-179 7-91 (129)
82 smart00370 LRR Leucine-rich re 90.1 0.29 6.4E-06 27.9 2.3 18 145-163 2-19 (26)
83 smart00369 LRR_TYP Leucine-ric 90.1 0.29 6.4E-06 27.9 2.3 18 145-163 2-19 (26)
84 PTZ00382 Variant-specific surf 89.5 0.42 9.2E-06 37.2 3.4 17 310-326 66-82 (96)
85 smart00369 LRR_TYP Leucine-ric 87.8 0.45 9.7E-06 27.1 1.9 20 120-140 1-20 (26)
86 smart00370 LRR Leucine-rich re 87.8 0.45 9.7E-06 27.1 1.9 20 120-140 1-20 (26)
87 PF05283 MGC-24: Multi-glycosy 87.1 3.3 7.1E-05 36.2 7.7 15 312-326 159-173 (186)
88 PF13908 Shisa: Wnt and FGF in 84.9 0.65 1.4E-05 40.4 2.3 24 309-332 77-100 (179)
89 PF12877 DUF3827: Domain of un 84.8 1.3 2.8E-05 45.5 4.6 30 307-336 266-296 (684)
90 PF06679 DUF1180: Protein of u 84.4 11 0.00023 32.4 9.3 6 345-350 129-134 (163)
91 PF12273 RCR: Chitin synthesis 83.3 0.89 1.9E-05 37.4 2.4 6 340-345 30-35 (130)
92 PF15176 LRR19-TM: Leucine-ric 82.2 1.3 2.9E-05 34.2 2.7 28 305-332 12-39 (102)
93 PF06697 DUF1191: Protein of u 81.1 1.4 3E-05 40.9 3.0 17 310-326 213-229 (278)
94 PF03229 Alpha_GJ: Alphavirus 80.5 4.9 0.00011 31.9 5.4 16 311-326 84-99 (126)
95 PF13516 LRR_6: Leucine Rich r 79.9 0.36 7.7E-06 27.0 -0.8 12 146-157 3-14 (24)
96 PTZ00382 Variant-specific surf 77.3 2.1 4.6E-05 33.2 2.5 35 303-337 62-96 (96)
97 PF15345 TMEM51: Transmembrane 74.2 5.3 0.00011 35.9 4.4 32 305-336 52-83 (233)
98 COG3889 Predicted solute bindi 74.0 4.3 9.4E-05 42.6 4.4 10 327-336 862-871 (872)
99 PF14575 EphA2_TM: Ephrin type 73.7 1.5 3.2E-05 32.4 0.8 16 312-327 2-17 (75)
100 smart00365 LRR_SD22 Leucine-ri 73.0 2.9 6.4E-05 24.1 1.7 13 122-134 3-15 (26)
101 PF15069 FAM163: FAM163 family 72.9 4.2 9.2E-05 33.7 3.3 25 308-332 4-28 (143)
102 PF08374 Protocadherin: Protoc 72.4 5.8 0.00013 35.2 4.2 32 302-333 33-64 (221)
103 smart00364 LRR_BAC Leucine-ric 72.2 2.6 5.6E-05 24.4 1.3 12 123-134 4-15 (26)
104 PF12273 RCR: Chitin synthesis 72.1 1.9 4.1E-05 35.4 1.1 7 311-317 2-8 (130)
105 PF02480 Herpes_gE: Alphaherpe 70.9 1.3 2.9E-05 44.1 0.0 37 305-341 350-386 (439)
106 PF01102 Glycophorin_A: Glycop 70.7 1.7 3.6E-05 35.3 0.5 33 308-341 62-94 (122)
107 PF07204 Orthoreo_P10: Orthore 70.0 1.8 4E-05 33.0 0.6 26 311-336 42-67 (98)
108 TIGR03154 sulfolob_CbsA cytoch 69.0 5.2 0.00011 38.0 3.4 26 310-335 440-465 (465)
109 PF06365 CD34_antigen: CD34/Po 69.0 7.5 0.00016 34.5 4.2 24 311-334 101-124 (202)
110 PF01708 Gemini_mov: Geminivir 68.8 20 0.00043 27.3 5.8 22 332-353 66-87 (91)
111 PF05454 DAG1: Dystroglycan (D 67.3 1.8 3.9E-05 40.6 0.0 15 309-323 147-161 (290)
112 TIGR01478 STEVOR variant surfa 66.9 2.7 5.9E-05 38.9 1.1 21 319-339 270-290 (295)
113 smart00368 LRR_RI Leucine rich 66.3 4.7 0.0001 23.4 1.7 13 98-110 3-15 (28)
114 PHA03281 envelope glycoprotein 66.1 11 0.00024 38.1 5.1 31 333-363 582-620 (642)
115 PTZ00370 STEVOR; Provisional 65.8 2.8 6.1E-05 38.9 1.0 20 320-339 267-286 (296)
116 PF04689 S1FA: DNA binding pro 60.7 15 0.00033 25.9 3.6 29 309-337 12-42 (69)
117 PF03302 VSP: Giardia variant- 60.5 6.8 0.00015 38.7 2.6 25 307-331 364-388 (397)
118 PF04478 Mid2: Mid2 like cell 60.4 10 0.00023 31.9 3.3 29 301-330 43-71 (154)
119 KOG1947 Leucine rich repeat pr 59.8 3.8 8.2E-05 40.6 0.8 90 92-181 209-307 (482)
120 PHA03291 envelope glycoprotein 59.1 90 0.002 30.0 9.5 16 333-348 313-328 (401)
121 KOG3864 Uncharacterized conser 57.1 1.5 3.3E-05 38.8 -2.2 35 145-179 151-186 (221)
122 PF11980 DUF3481: Domain of un 55.8 13 0.00029 27.8 2.8 19 310-328 15-33 (87)
123 KOG3514 Neurexin III-alpha [Si 55.5 37 0.0008 37.4 7.0 30 304-333 1509-1538(1591)
124 PF07213 DAP10: DAP10 membrane 55.4 10 0.00022 28.1 2.2 26 309-334 32-57 (79)
125 PF01034 Syndecan: Syndecan do 53.3 4.6 9.9E-05 28.7 0.1 30 311-340 9-39 (64)
126 KOG3763 mRNA export factor TAP 52.0 7.9 0.00017 39.3 1.5 65 95-161 216-286 (585)
127 PF01299 Lamp: Lysosome-associ 51.9 7.9 0.00017 36.7 1.5 26 312-337 272-299 (306)
128 PRK14750 kdpF potassium-transp 51.6 17 0.00036 21.3 2.2 15 314-328 3-17 (29)
129 PF02009 Rifin_STEVOR: Rifin/s 51.4 3.7 8.1E-05 38.7 -0.8 27 308-334 254-280 (299)
130 PF15102 TMEM154: TMEM154 prot 50.8 51 0.0011 27.6 5.8 26 309-334 58-83 (146)
131 PF05393 Hum_adeno_E3A: Human 50.4 20 0.00043 27.1 3.0 32 312-345 35-66 (94)
132 PF13908 Shisa: Wnt and FGF in 47.2 17 0.00036 31.5 2.7 7 329-335 94-100 (179)
133 PHA03265 envelope glycoprotein 47.1 8.8 0.00019 36.6 0.9 26 310-337 351-376 (402)
134 PF05454 DAG1: Dystroglycan (D 46.3 6.6 0.00014 36.9 0.0 27 308-334 142-169 (290)
135 PF08114 PMP1_2: ATPase proteo 45.6 21 0.00046 22.9 2.2 24 310-334 9-32 (43)
136 PF10873 DUF2668: Protein of u 44.6 22 0.00048 29.6 2.7 15 312-326 62-76 (155)
137 PF05808 Podoplanin: Podoplani 44.2 7.5 0.00016 33.0 0.0 18 309-326 127-144 (162)
138 PF01299 Lamp: Lysosome-associ 44.0 7.7 0.00017 36.8 0.1 15 320-334 285-299 (306)
139 KOG1947 Leucine rich repeat pr 43.4 6.5 0.00014 38.9 -0.6 104 73-176 214-328 (482)
140 PF06809 NPDC1: Neural prolife 43.0 47 0.001 31.4 5.0 27 302-328 193-219 (341)
141 PHA03281 envelope glycoprotein 39.9 50 0.0011 33.6 4.9 33 307-339 550-582 (642)
142 KOG3763 mRNA export factor TAP 39.0 17 0.00036 37.1 1.5 62 73-136 218-285 (585)
143 PF12606 RELT: Tumour necrosis 39.0 44 0.00096 22.6 3.1 22 315-336 4-25 (50)
144 PTZ00046 rifin; Provisional 38.1 9.4 0.0002 36.8 -0.4 28 307-334 312-339 (358)
145 KOG4308 LRR-containing protein 36.6 1.9 4E-05 43.7 -5.7 38 145-182 262-303 (478)
146 TIGR01477 RIFIN variant surfac 36.4 9.6 0.00021 36.6 -0.6 28 307-334 307-334 (353)
147 PF00558 Vpu: Vpu protein; In 35.8 31 0.00067 25.8 2.1 34 312-345 6-41 (81)
148 PRK14748 kdpF potassium-transp 34.0 47 0.001 19.5 2.2 14 314-327 3-16 (29)
149 PF10577 UPF0560: Uncharacteri 33.0 16 0.00034 38.9 0.2 26 309-334 271-297 (807)
150 PF04971 Lysis_S: Lysis protei 30.9 36 0.00078 24.5 1.7 23 311-333 33-55 (68)
151 PF11857 DUF3377: Domain of un 30.7 89 0.0019 22.9 3.7 29 312-340 31-61 (74)
152 PF12191 stn_TNFRSF12A: Tumour 30.2 34 0.00073 27.8 1.6 20 307-326 75-94 (129)
153 PF14654 Epiglycanin_C: Mucin, 30.0 55 0.0012 25.3 2.7 25 312-336 20-45 (106)
154 KOG3864 Uncharacterized conser 29.4 8.1 0.00018 34.4 -2.1 82 74-155 102-186 (221)
155 KOG3671 Actin regulatory prote 29.3 3.2E+02 0.0069 27.8 8.4 9 34-42 43-51 (569)
156 PF12301 CD99L2: CD99 antigen 29.2 79 0.0017 27.3 3.9 16 309-324 113-128 (169)
157 PF05624 LSR: Lipolysis stimul 29.2 1E+02 0.0022 20.4 3.4 18 313-330 5-22 (49)
158 PF14610 DUF4448: Protein of u 27.7 91 0.002 27.2 4.2 13 321-333 168-180 (189)
159 PF06024 DUF912: Nucleopolyhed 27.1 1.1E+02 0.0024 23.9 4.1 10 310-319 62-71 (101)
160 PRK01470 tatA twin arginine tr 26.4 1E+02 0.0023 20.9 3.3 15 30-44 30-44 (51)
161 PF10883 DUF2681: Protein of u 26.3 53 0.0011 25.0 2.0 19 316-334 6-24 (87)
162 PF05399 EVI2A: Ectropic viral 25.9 3.6E+02 0.0078 24.1 7.3 7 335-341 156-162 (227)
163 TIGR00864 PCC polycystin catio 25.9 44 0.00095 40.7 2.3 32 103-134 1-32 (2740)
164 PHA03265 envelope glycoprotein 25.9 87 0.0019 30.1 3.8 13 310-322 356-368 (402)
165 KOG3671 Actin regulatory prote 25.9 5.3E+02 0.011 26.3 9.3 9 30-38 24-32 (569)
166 PHA03283 envelope glycoprotein 25.4 73 0.0016 32.3 3.4 7 50-56 53-59 (542)
167 PF05283 MGC-24: Multi-glycosy 25.0 3.6E+02 0.0078 23.6 7.2 30 304-334 155-184 (186)
168 COG3416 Uncharacterized protei 24.8 98 0.0021 27.5 3.7 9 314-322 147-155 (233)
169 KOG3637 Vitronectin receptor, 24.7 72 0.0016 35.6 3.6 26 307-333 976-1001(1030)
170 PF13260 DUF4051: Protein of u 24.3 1.4E+02 0.0029 20.0 3.4 19 25-43 26-44 (54)
171 PHA03292 envelope glycoprotein 23.5 2.5E+02 0.0055 27.4 6.4 12 334-345 345-357 (413)
172 PHA03282 envelope glycoprotein 23.4 42 0.00091 33.5 1.3 9 313-321 410-418 (540)
173 COG3416 Uncharacterized protei 23.0 1.2E+02 0.0027 26.9 3.9 12 315-326 144-155 (233)
174 PF10812 DUF2561: Protein of u 22.7 1.1E+02 0.0025 26.9 3.7 33 304-336 57-89 (207)
175 PF15012 DUF4519: Domain of un 22.6 54 0.0012 22.7 1.3 21 313-333 31-51 (56)
176 PF14991 MLANA: Protein melan- 22.6 27 0.00058 27.8 -0.2 15 336-350 53-67 (118)
177 PF05568 ASFV_J13L: African sw 22.4 56 0.0012 27.2 1.6 14 327-340 47-60 (189)
178 PF09049 SNN_transmemb: Stanni 22.2 1.1E+02 0.0023 18.2 2.3 6 329-334 27-32 (33)
179 PRK11486 flagellar biosynthesi 21.8 85 0.0018 25.6 2.6 8 355-362 60-67 (124)
180 PF11057 Cortexin: Cortexin of 21.3 1.7E+02 0.0036 21.6 3.7 15 321-335 37-51 (81)
181 PF12768 Rax2: Cortical protei 21.2 1.3E+02 0.0029 28.1 4.2 10 72-81 36-45 (281)
182 PF07010 Endomucin: Endomucin; 20.5 1.6E+02 0.0035 26.5 4.2 74 261-335 144-217 (259)
183 PF02038 ATP1G1_PLM_MAT8: ATP1 20.4 51 0.0011 22.2 0.8 17 315-331 18-34 (50)
184 KOG4308 LRR-containing protein 20.2 7.8 0.00017 39.2 -4.6 108 75-182 89-217 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1e-21 Score=213.28 Aligned_cols=162 Identities=30% Similarity=0.530 Sum_probs=129.5
Q ss_pred hhccCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeeeC-CCCEEEEEccCCCCCCcCcccccCCCCcCE
Q 017764 23 CLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKS 101 (366)
Q Consensus 23 ~~~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~ 101 (366)
..+...++|+.+|++||+++ .++.+.+.+|+ .+.++|.|.||+|+ .++|+.|+|++|+++|.++..+..+++|++
T Consensus 22 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 22 NFSMLHAEELELLLSFKSSI-NDPLKYLSNWN---SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred HccCCCHHHHHHHHHHHHhC-CCCcccCCCCC---CCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence 34445678999999999999 46767788998 56789999999998 679999999999999988888888999999
Q ss_pred EEccCCCCCCCCccccC-CCCCCCeeeccCCcCC----------------------CCCCcccCCCCCCcEEEccCCCCC
Q 017764 102 IILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFS----------------------GPLPNDLGINHSLTILLLDNNDFV 158 (366)
Q Consensus 102 L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~----------------------g~lP~~l~~l~~L~~L~L~~N~l~ 158 (366)
|+|++|.++|.+|..+. .+++|++|+|++|+++ +.+|..++++++|++|+|++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 99999998888886654 5566666655555554 455666777778888888888888
Q ss_pred CCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764 159 GSLSPEIYKLQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 159 g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~ 188 (366)
+.+|..++++++|++|++++|.+++.+|..
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 207 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChH
Confidence 788888888888888888888888877753
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.86 E-value=8.8e-21 Score=195.83 Aligned_cols=149 Identities=31% Similarity=0.506 Sum_probs=126.9
Q ss_pred cCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC-----CcceeeeC--C----CCEEEEEccCCCCCCcCccccc
Q 017764 26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC-----SWFGVECS--D----GKVVNLNLKDLCLEGTLAPEIQ 94 (366)
Q Consensus 26 ~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C-----~w~Gv~C~--~----~~v~~L~L~~n~l~g~~p~~l~ 94 (366)
....+|..+|+.+|+.+. ++. ..+|. . ++| .|.||.|. . ..|+.|+|++|.+.|.+|..+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~---g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWN---G--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCC---C--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 456789999999999984 332 24797 2 345 79999995 1 2489999999999999999999
Q ss_pred CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCC-CCCCE
Q 017764 95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKL-QVLSE 173 (366)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l-~~L~~ 173 (366)
+|++|+.|+|++|.|+|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+|+|.+|..+..+ .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764 46777
Q ss_pred EeccCCCCc
Q 017764 174 SQVDEGQLS 182 (366)
Q Consensus 174 L~l~~N~l~ 182 (366)
+++.+|...
T Consensus 520 l~~~~N~~l 528 (623)
T PLN03150 520 FNFTDNAGL 528 (623)
T ss_pred EEecCCccc
Confidence 888887643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.67 E-value=2.7e-16 Score=170.98 Aligned_cols=114 Identities=28% Similarity=0.446 Sum_probs=76.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+.|.+|..+ .+.+|++|+|++|.+++.+|..+.++++|++|+|++|++.+.+|..+..+++|++|+|
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 356667777776666666543 3466667777777776666666666666777777777776666666666666777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|.++|.+|..+..+++|+.|+|++|+++|.+|.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 77777666666666666777777777777666664
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=2.5e-12 Score=133.27 Aligned_cols=92 Identities=27% Similarity=0.443 Sum_probs=88.7
Q ss_pred CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEecc
Q 017764 98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177 (366)
Q Consensus 98 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~ 177 (366)
.++.|+|++|.+.|.+|..+..|++|+.|+|++|+|.|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCccc
Q 017764 178 EGQLSSAAKKEQ 189 (366)
Q Consensus 178 ~N~l~g~iP~~~ 189 (366)
+|+|+|.+|...
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 999999999654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=5.3e-14 Score=118.95 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=93.0
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|.|++|.++ .+|+.+..|.+|+.|++.+|++. .+|..++.|++|+.|+++-|++. .+|..|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 357888999999998 78888999999999999999998 78888999999999999999998 7899999999999999
Q ss_pred ccCCCCC-CCChhhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFV-GSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~-g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|.+|++. ..+|..|..|..|+.|+|++|.|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 9998886 356777777788888888888776
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=6.5e-13 Score=112.39 Aligned_cols=111 Identities=32% Similarity=0.496 Sum_probs=96.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~ 151 (366)
.+++.|++.+|+++ .+|.++..|+.|+.|+++.|.+. .+|..|+.++.|++|||.+|++.. .+|..|..++.|+.|.
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 46888999999998 78999999999999999999998 789999999999999999999864 5777888888888999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
|++|.|. .+|..++++++|+.|.+.+|.+- ++|.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 9999988 88888999999999999888875 3443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.09 E-value=1.9e-11 Score=115.54 Aligned_cols=106 Identities=29% Similarity=0.404 Sum_probs=69.7
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++-|+|++|-+. .+|.+++.+..|+.||++.|.|. .+|..+..+..|+.+-.++|++...-++.+.+|.+|..|||.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 3444555544443 44555555555555555555544 444444444444444444455542223347889999999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|.+. .+|..+++|.+|++|++++|+|.
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC
Confidence 99999 89999999999999999999998
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.01 E-value=3e-11 Score=118.86 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=105.5
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc---cCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~~L 150 (366)
++.+|+|++|+|+..-+.+|..|..|++|+|+.|.++..--..|..+++|+.|||++|.+++.|-+. |..|++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 5666777777766444445666666777777777766444456777888889999999888777643 6678999999
Q ss_pred EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCc-----------------ccccccccccccCccCchhhh-ccc
Q 017764 151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK-----------------EQSCYERSIKWNGVLDEDTVQ-RRL 211 (366)
Q Consensus 151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~-----------------~~~c~~~~~~~~~~~~~~~~~-~~~ 211 (366)
+|.+|++. .|| ..|..+.+|++|||.+|.+...-|. .|+|.+..+. .++-.+..| ...
T Consensus 398 ~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~--qWl~~~~lq~sv~ 474 (873)
T KOG4194|consen 398 RLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA--QWLYRRKLQSSVI 474 (873)
T ss_pred eecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHH--HHHHhccccccee
Confidence 99999998 555 4788999999999999988754443 2444444333 111122222 344
Q ss_pred ccccccccccCcccCCCC
Q 017764 212 LQINPFRNLKGRILGIAP 229 (366)
Q Consensus 212 ~~c~~~~~~~g~~l~~~~ 229 (366)
..|..+..+.|+-+-.++
T Consensus 475 a~CayPe~Lad~~i~svd 492 (873)
T KOG4194|consen 475 AKCAYPEPLADQSIVSVD 492 (873)
T ss_pred eeccCCcccccceeEeec
Confidence 578899888888775444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.99 E-value=3.7e-11 Score=118.19 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|+.|++...-...+.+|+.|+.|+||+|.|...-++.+....+|++|+|++|+++..-+..|..|..|+.|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 36788888888887555556778888888888888888777778888888888888888888544455666677777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
++|.++-..-..|..+++|+.|||++|.+++.|
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 777666333345566666666666666666544
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.2e-10 Score=97.63 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=42.6
Q ss_pred CEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCccc-CCCCCCcEEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL 151 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~ 151 (366)
++++|+|++|.|+ .+. .++ .+.+|+.|||++|.++. +. .+..+++|++|++++|+++ .+...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 5789999999998 443 465 58899999999999984 43 5888999999999999999 565544 3689999999
Q ss_pred ccCCCCCCCC-hhhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~ 182 (366)
|++|++...- -..+..+++|+.|++.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999997321 145778999999999999986
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.96 E-value=1.1e-10 Score=115.69 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=85.5
Q ss_pred CCEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC----------------
Q 017764 73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG---------------- 135 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g---------------- 135 (366)
.+...|+|++|+|. +||.. +.+|+.|-.||||+|.+. .+|+.+..|.+|++|+|++|.+..
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 35678888888887 66665 678888888888888887 677777788888888888875421
Q ss_pred ---------CCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 136 ---------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 136 ---------~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
.+|.++..+.+|..+||+.|++. .+|+.+.++.+|+.|+|++|+++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 36667777788888899999988 88999999999999999999886
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.92 E-value=1.6e-10 Score=114.64 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=87.6
Q ss_pred CCEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L 150 (366)
.+++++++..|+|.. -+|+++..|..|++||||+|+++ ..|..+..-+++-+|+|++|+|. .||.. +.+|+.|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 356777778887753 47888888888999999999888 68888888888888999999888 78865 4578888888
Q ss_pred EccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
||++|++. .+|+.+..|..|+.|+|++|.+.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 99998888 78888888888888888888765
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.87 E-value=1.1e-10 Score=110.56 Aligned_cols=111 Identities=27% Similarity=0.363 Sum_probs=77.3
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccC-CCCCCcEEEccC
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLDN 154 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~L~~ 154 (366)
..||.-.|-++ .+|++++.|.+|..|+|..|.+. .+| +|.++..|++|.++.|++. .+|.+.. ++.+|.+|||.+
T Consensus 186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence 34444444443 55666666666666666666665 344 5666666666666666666 5666555 788899999999
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccc
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 191 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c 191 (366)
|+++ .+|.++..+++|.+||+++|.+++--+...+.
T Consensus 262 Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 262 NKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred cccc-cCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence 9999 89999999999999999999998765544333
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=6.6e-10 Score=114.57 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=87.1
Q ss_pred CCEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.|. .+|+. +.+|..|++|+||+|.++ .+|..+.++..|++|...+|++. .+| ++..++.|+++|
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 47899999999987 56664 888999999999999998 78899999999999999999998 788 888999999999
Q ss_pred ccCCCCCCC-ChhhhhCCCCCCEEeccCCC
Q 017764 152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 152 L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~ 180 (366)
|+.|+++.. +|.. ..-++|++|||++|.
T Consensus 459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhh-CCCcccceeeccCCc
Confidence 999999743 3433 233899999999997
No 15
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=5.7e-09 Score=69.02 Aligned_cols=41 Identities=41% Similarity=0.981 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCCCCCC-CCCCCCcceeeeC
Q 017764 29 NDEGLALLRLRERVVRDPYGALTSWRSCDT-ENNPCSWFGVECS 71 (366)
Q Consensus 29 ~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~-~~~~C~w~Gv~C~ 71 (366)
++|+++|++||+++..++.+.+.+|+ .. ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 68999999999999767778899998 23 2799999999996
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=3.3e-09 Score=100.42 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred CCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhh
Q 017764 86 EGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE 164 (366)
Q Consensus 86 ~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~ 164 (366)
.+..|. +|..|++|++|+|++|.+++.-+..|.++.++++|.|..|++...--..|.++..|+.|+|.+|+++-.-|..
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 334444 4899999999999999999999999999999999999999998544456889999999999999999888999
Q ss_pred hhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCCCC
Q 017764 165 IYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTS 231 (366)
Q Consensus 165 l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~~~ 231 (366)
|..+.+|..|.|-.|.|. |+|.+..+. |.. .+. ......|..+..+++-++.++.+.
T Consensus 342 F~~~~~l~~l~l~~Np~~------CnC~l~wl~~Wlr---~~~-~~~~~~Cq~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFN------CNCRLAWLGEWLR---KKS-VVGNPRCQSPGFVRQIPISDVAFG 399 (498)
T ss_pred ccccceeeeeehccCccc------CccchHHHHHHHh---hCC-CCCCCCCCCCchhccccchhcccc
Confidence 999999999999999987 777666554 422 111 334456888888888777766643
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.76 E-value=1.1e-08 Score=107.14 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|+.|++++|+|+ .+|.. ..+|+.|+|++|+|+ .+|..+.++.+|+.|+|++|+|+|.++.
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 34555555555555 34432 235666777777777 6788888888888888888888877664
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=6.2e-09 Score=74.30 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=16.7
Q ss_pred cCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764 141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 141 l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~ 180 (366)
|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3344444444444444443323334444444444444443
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=4.8e-09 Score=74.90 Aligned_cols=61 Identities=33% Similarity=0.532 Sum_probs=55.0
Q ss_pred CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCC
Q 017764 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157 (366)
Q Consensus 97 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l 157 (366)
++|++|++++|.++...+..|..+++|++|++++|.++..-+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999966667899999999999999999966667899999999999999975
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=3e-09 Score=97.58 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=65.1
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
+++|||++|.++ .+..++.-++.++.|+++.|.+.. + ..+..|.+|+.|||++|.++ .+-..-..+.+++.|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 567777777776 666666667777777777777762 2 23666777777777777776 3333334555666666666
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|.+. .+ ..+.++-+|..||+++|++.
T Consensus 362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 362 NKIE-TL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhHh-hh-hhhHhhhhheeccccccchh
Confidence 6654 22 34556666666666666654
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=1.6e-09 Score=106.72 Aligned_cols=117 Identities=23% Similarity=0.312 Sum_probs=92.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
-+..|.+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++..| .|..||++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence 3667777888876 67778887778888888888887 67777888888888888888888 678887744 47889999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK 197 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~ 197 (366)
.|+++ .||-.|.+|+.|++|.|.+|.|.. |...-|......
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVH 260 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVH 260 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCCC--ChHHHHhcccee
Confidence 99999 899999999999999999999974 334445544433
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-09 Score=111.92 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=96.9
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.++.|.|.+|.|+...-+.+.++.+|++|+|++|++. .+| ..+.++..|+.|+||+|.++ .+|..+.++..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 5788999999999887778999999999999999998 566 46788999999999999999 89999999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
.+|++. .+| ++..++.|+.+|++.|+|+-
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 999999 888 89999999999999999973
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=4.6e-09 Score=103.48 Aligned_cols=106 Identities=28% Similarity=0.383 Sum_probs=73.3
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
.++.|+|+.|.++ .+|..+..|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 4566677777776 5666666665 777777777776 56777777777777777777776 677777777777777777
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
.|++. .+|+++..| .|..||++.|+++ .||
T Consensus 198 Rn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred hhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 77776 666666643 3667777777765 444
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=1.2e-07 Score=99.65 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=54.2
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+.+.|+|++++++ .+|..+. ++|+.|+|++|.|+ .+|..+. .+|++|++++|+|+ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567777777776 4565443 45677777777766 4554443 36666666666666 4554332 245555555
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|++. .+|..+. .+|+.|++++|+|+
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC
Confidence 55555 4444432 24555555555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.55 E-value=7.6e-09 Score=97.98 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC-CcCCCCCCc-ccCCCCCCcEEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH-NNFSGPLPN-DLGINHSLTILL 151 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~-N~l~g~lP~-~l~~l~~L~~L~ 151 (366)
..+.|+|..|.|+..-+..|..+++|+.|||++|+|+.+-|+.|.+|.+|..|.+-+ |+|+ .+|. .|++|.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 568999999999955555699999999999999999999999999999998887766 9998 6775 588999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+.-|++.-.....|..|++|..|.+.+|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 9999998666778889999999999888775
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=2.6e-08 Score=94.42 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=54.0
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCC---cCEEEccCCCCCC----CCccccCCC-CCCCeeeccCCcCCCC----CCcc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPND 140 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~---L~~L~Ls~N~l~g----~~P~~l~~l-~~L~~L~Ls~N~l~g~----lP~~ 140 (366)
.+++.|+|++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|+|++|.+++. +...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 35666666666665444444444433 6666666665552 122233344 5556666666655532 1222
Q ss_pred cCCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764 141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 141 l~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+..+.+|++|+|++|.+++. ++..+..+++|++|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 33444555555555555532 2223334445555555555554
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=2.7e-08 Score=94.24 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=77.5
Q ss_pred CEEEEEccCCCCCC----cCcccccCC-CCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcc
Q 017764 74 KVVNLNLKDLCLEG----TLAPEIQSL-THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPND 140 (366)
Q Consensus 74 ~v~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~ 140 (366)
+++.|+|++|.+++ .+...+..+ ++|+.|+|++|.+++. +...+..+.+|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 38888888888763 233445566 7888888888888743 334566677888888888888742 2334
Q ss_pred cCCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764 141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 141 l~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
+..+++|++|+|++|.+++. +...+..+++|++|++++|.+++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 45567888888888887643 23345667788888888888875
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.1e-08 Score=93.93 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=92.7
Q ss_pred cceeeeC------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC
Q 017764 65 WFGVECS------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 138 (366)
Q Consensus 65 w~Gv~C~------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP 138 (366)
++-|+|. ...|+.|+++.|+|. .+. .+..|.+|+.|||++|.++. +-..-..|.+.+.|.|+.|.+.. -
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~--L 367 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET--L 367 (490)
T ss_pred ccchhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh--h
Confidence 4556665 247899999999997 444 48889999999999999983 43344578899999999999872 2
Q ss_pred cccCCCCCCcEEEccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcccC
Q 017764 139 NDLGINHSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 139 ~~l~~l~~L~~L~L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
..++.+-+|..||+++|++. .+- ..+++++-|++|.|.+|++.+..
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence 46788899999999999987 443 26899999999999999998654
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=2.9e-07 Score=102.18 Aligned_cols=104 Identities=23% Similarity=0.269 Sum_probs=55.2
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|.+|.+. .++..+..+++|++|+|+++.....+|. +..+++|+.|+|++|.....+|..+.++.+|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4455555555554 3444455555666666655543334442 5555566666665554444555555556666666665
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~ 180 (366)
+|...+.+|..+ ++++|+.|++++|.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 554334555433 44555555555543
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.52 E-value=3.3e-07 Score=96.47 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=85.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
..++.|+|++|+|+ .+|..+. .+|++|+|++|.|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 36899999999999 6777654 58999999999998 5776554 47999999999999 7887764 58999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|+++ .+|..+. .+|+.|++++|+|++ +|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence 999999 6787664 589999999999985 443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=9.3e-08 Score=83.03 Aligned_cols=87 Identities=31% Similarity=0.430 Sum_probs=29.9
Q ss_pred cccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhh-hCCC
Q 017764 92 EIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI-YKLQ 169 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l-~~l~ 169 (366)
.+.+...+++|+|++|.|+- | ..++ .+.+|+.|+|++|.++ .+. .+..+..|+.|+|++|.++ .+.+.+ ..++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 35566679999999999983 4 3566 5889999999999999 454 6788999999999999999 565555 4689
Q ss_pred CCCEEeccCCCCcc
Q 017764 170 VLSESQVDEGQLSS 183 (366)
Q Consensus 170 ~L~~L~l~~N~l~g 183 (366)
+|++|++++|++..
T Consensus 89 ~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 89 NLQELYLSNNKISD 102 (175)
T ss_dssp T--EEE-TTS---S
T ss_pred cCCEEECcCCcCCC
Confidence 99999999999973
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=7.3e-07 Score=99.00 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=94.4
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|++.++.+. .+|..+ .+.+|++|+|++|.+. .++..+..+++|+.|+|+++.....+| .+..+++|+.|+|+
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 4677777777765 677666 5689999999999988 678888999999999999887666787 48889999999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~ 189 (366)
+|.....+|..+.++.+|+.|++++|..-+.+|...
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 988777999999999999999999987667777543
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=1.6e-06 Score=91.27 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=32.2
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~ 134 (366)
+++.|+|.+|+|+ .+|. .+++|++|+|++|+|+ .+|.. ..+|+.|+|++|.++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 5677777777776 3553 2467777777777777 34532 234555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=3.3e-07 Score=89.95 Aligned_cols=103 Identities=28% Similarity=0.423 Sum_probs=80.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCC-CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+.++.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 5778888888877 6677777774 8888888888887 56666778888888888888888 67766667788888888
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~ 180 (366)
++|+++ .+|..+..+..|+.|++++|+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 888888 777766666678888888884
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=6.9e-08 Score=97.68 Aligned_cols=102 Identities=24% Similarity=0.299 Sum_probs=53.1
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEEEcc
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLLD 153 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~L~ 153 (366)
+...+.+.|.|. .+..++.-+++|+.|||++|++... ..+..|.+|++|||++|.+. .+|.- ...+ .|+.|.|+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 344455555554 4444555555666666666666532 24555566666666666665 44421 1122 25566666
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
+|.++ .+ ..+.+|.+|+.||+++|-+.+
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhhhc
Confidence 66555 22 234555666666666665543
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1e-07 Score=78.26 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=42.7
Q ss_pred CEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
+++.++|++|.+. .+|+.|. .++.++.|+|++|.++ .+|.++..++.|+.|++++|.|. ..|.-+..|.+|-.||.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4455555555554 3333332 2334555555555555 34555555555555555555555 34444444555555555
Q ss_pred cCCCCCCCChhh
Q 017764 153 DNNDFVGSLSPE 164 (366)
Q Consensus 153 ~~N~l~g~iP~~ 164 (366)
.+|.+. .||..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 555544 44443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=1.2e-06 Score=93.80 Aligned_cols=106 Identities=27% Similarity=0.338 Sum_probs=90.2
Q ss_pred CCEEEEEccCCC--CCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764 73 GKVVNLNLKDLC--LEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (366)
Q Consensus 73 ~~v~~L~L~~n~--l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 149 (366)
..+++|-+.+|. +. .++.. |..++.|++|||++|.=-+.+|..+++|-+|++|+|++..+. .+|..+.+|..|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 368888888886 44 34443 777999999999998877899999999999999999999999 89999999999999
Q ss_pred EEccCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 150 L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~ 180 (366)
||+..+.....+|..+..|.+|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999988776777777779999999987655
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.7e-07 Score=75.81 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=86.1
Q ss_pred EEEEEccCCCCCCcCccc---ccCCCCcCEEEccCCCCCCCCccccCC-CCCCCeeeccCCcCCCCCCcccCCCCCCcEE
Q 017764 75 VVNLNLKDLCLEGTLAPE---IQSLTHIKSIILRNNSFSGIIPEGFGE-LEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~---l~~L~~L~~L~Ls~N~l~g~~P~~l~~-l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 150 (366)
+..++|+++.|- .++.. +....+|+..+|++|.|. .+|..|.. .+.++.|+|++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 456777777764 45544 455567888899999998 56766654 458999999999999 899999999999999
Q ss_pred EccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+++.|.|. ..|.-+..|.+|..|+..+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 99999999 77888888999999999998764
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=3.1e-06 Score=83.07 Aligned_cols=112 Identities=29% Similarity=0.374 Sum_probs=63.9
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
++.|++++|.+. .+|..+..+..|++|++++|.+. .++..+..+.++..+.+.+|++. .++..++.+.+|+.|++++
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 444445555444 34443333444555555555322 23344455555555555555555 3355666677777777777
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccc
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 191 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c 191 (366)
|.++ .++. ++.+.+|+.|++++|.+....|....+
T Consensus 265 n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 265 NQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence 7777 4544 777777777777777777666654333
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.6e-06 Score=54.22 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 146 SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 146 ~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|++|+|++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 44444555555555555555544
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=6.5e-06 Score=54.55 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=17.0
Q ss_pred CCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCC
Q 017764 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV 158 (366)
Q Consensus 122 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 158 (366)
+|++|++++|+|+ .+|..+.+|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 34444555555555555555544
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=6.2e-07 Score=90.97 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=82.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccc-cCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..++.|||+.|+++.. . .+..|++|++|||++|.++ .+|.. ...+ +|+.|.|++|.++. + ..+.+|.+|+.||
T Consensus 187 ~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-h-hhHHhhhhhhccc
Confidence 3688999999999843 3 6888999999999999998 55542 2233 49999999999983 2 3677899999999
Q ss_pred ccCCCCCCCCh-hhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSLS-PEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~ 182 (366)
|++|-+.+.-- .-++.|..|+.|+|.+|.+-
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998875321 23567889999999999885
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=9.9e-06 Score=80.26 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=74.5
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
..++.|+|.+|.|.+ +...+..+.+|++|+|++|.|+... .+..+..|+.|++++|.++. + ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhcccC
Confidence 467788888888874 3333677788888888888887442 35667778888888888872 3 34555778888888
Q ss_pred cCCCCCCCChhh-hhCCCCCCEEeccCCCCc
Q 017764 153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 153 ~~N~l~g~iP~~-l~~l~~L~~L~l~~N~l~ 182 (366)
++|.+. .+... ...+.+|+.+++++|.+.
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 888887 33332 467778888888888765
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=8.1e-06 Score=80.91 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=85.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
.+..+++..|.+.. +-..+..+++|+.|++.+|.|.. +...+..+.+|++|+|++|.|+.. ..+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 45566677887763 34458889999999999999984 443377899999999999999843 256677789999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+|.++ .+ ..+..+.+|+.+++++|++...-+
T Consensus 149 ~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 149 GNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cCcch-hc-cCCccchhhhcccCCcchhhhhhh
Confidence 99998 43 345668999999999999985544
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.58 E-value=4.9e-05 Score=81.57 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=87.7
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC--CCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS--FSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~--l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.++.+.+-+|.+. .++.... .+.|++|-+..|. +.-.....|..|+.|++|||++|.=-+.+|..++.|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4566666677665 3333332 3479999999986 4433334578899999999999888789999999999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++..+. .+|..+.+|++|.+|++..+.....+|
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 9999999 999999999999999999887655553
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00013 Score=63.82 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEEEcc
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTILLLD 153 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L~L~ 153 (366)
..+||++|.+.. + ..|..++.|.+|.|.+|.|+..-|.--.-+++|+.|.|.+|++. .+- ..+..++.|++|.+-
T Consensus 45 d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeec
Confidence 345555555431 1 23444455555555555555333322223344555555555554 121 123344455555555
Q ss_pred CCCCC
Q 017764 154 NNDFV 158 (366)
Q Consensus 154 ~N~l~ 158 (366)
+|..+
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55443
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.4e-05 Score=73.76 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=44.0
Q ss_pred CEEEEEccCCCCCCc-CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L 150 (366)
+++.|.|++++|+.. +-..+..+++|+.|+|..|..-+..-.....+..|+.|||++|++- ..+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 444444444444411 1112233444444454444321111122223444555555555554 222 223444555555
Q ss_pred EccCCCCCCC-Chhh-----hhCCCCCCEEeccCCCC
Q 017764 151 LLDNNDFVGS-LSPE-----IYKLQVLSESQVDEGQL 181 (366)
Q Consensus 151 ~L~~N~l~g~-iP~~-----l~~l~~L~~L~l~~N~l 181 (366)
+++.+.+... +|+. ...+++|++|++..|++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555544321 1111 23345555555555554
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=6.5e-05 Score=72.57 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCc--cccCCCCCCCeeeccCCcCCCC-CCcc-----cCCC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP--EGFGELEELEVLDFGHNNFSGP-LPND-----LGIN 144 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L~Ls~N~l~g~-lP~~-----l~~l 144 (366)
..+..|+|..|..-+..-.+...+..|+.|||++|++- .++ ...+.++.|+.|+++.+.+... +|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 46889999999533333344556789999999999987 344 4577899999999999988732 2322 3467
Q ss_pred CCCcEEEccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcc
Q 017764 145 HSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 145 ~~L~~L~L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|++|++..|++. ..+ ..+..+.+|++|.+..|+|+-
T Consensus 301 ~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 301 PKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 89999999999985 333 356778899999999999873
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00033 Score=61.44 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=74.2
Q ss_pred EEEEccCCCCCCcCcccccC-CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccC-CCCCCcEEEcc
Q 017764 76 VNLNLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLD 153 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~L~ 153 (366)
+.++|.+..+. .+- .++. +.....+||++|.+.. + ..|..+..|.+|.|++|+|+. |-..+. -+++|+.|.|.
T Consensus 22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chh-hccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEEec
Confidence 45777776654 111 1222 3567889999999963 2 457789999999999999995 444554 45789999999
Q ss_pred CCCCCCCCh--hhhhCCCCCCEEeccCCCCc
Q 017764 154 NNDFVGSLS--PEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 154 ~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|++. .+- .-+..+++|++|.+-+|+.+
T Consensus 97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred Ccchh-hhhhcchhccCCccceeeecCCchh
Confidence 99987 332 24678899999999999876
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00086 Score=60.97 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=32.5
Q ss_pred ccCCCCcCEEEccCC--CCCCCCccccCCCCCCCeeeccCCcCCCCCCcc---cCCCCCCcEEEccCCCCC
Q 017764 93 IQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLTILLLDNNDFV 158 (366)
Q Consensus 93 l~~L~~L~~L~Ls~N--~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~~L~L~~N~l~ 158 (366)
+..|++|++|+++.| .+++.++.-.-.+++|++|+|+.|++.- +.. +..+.+|..||+.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 444556666666666 3333344333444666666666666551 222 233444555555555544
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.55 E-value=0.0012 Score=69.21 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=56.2
Q ss_pred CEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEEE
Q 017764 74 KVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL 151 (366)
Q Consensus 74 ~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~ 151 (366)
.+++|.+.+-.+.. .+-....++++|..||+|+.+++.. ..+++|++|++|.+.+=.|.. ..-..+.+|++|++||
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 45555555554432 1222344566666666666666532 456666666666665544441 1112455666677777
Q ss_pred ccCCCCCCCC--hh----hhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSL--SP----EIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~i--P~----~l~~l~~L~~L~l~~N~l~ 182 (366)
+|.......- .. .-..|++|+.||.++..++
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7665544211 11 1134666777776666555
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0014 Score=59.64 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=65.6
Q ss_pred CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC--cCCCCCCcccCCCCCCcEEEccCCCCCCCChh---
Q 017764 89 LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN--NFSGPLPNDLGINHSLTILLLDNNDFVGSLSP--- 163 (366)
Q Consensus 89 ~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N--~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~--- 163 (366)
+....-.+..|+.|.+.+-.++.. ..+..|++|+.|.++.| +.++.++.-...+++|++|+|++|++. . +.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc
Confidence 333344455666666666666521 34667899999999999 666666655667799999999999987 2 33
Q ss_pred hhhCCCCCCEEeccCCCCcc
Q 017764 164 EIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 164 ~l~~l~~L~~L~l~~N~l~g 183 (366)
.+..+.+|..|++.+|.-+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 35677889999999987764
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00013 Score=66.80 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=65.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcEEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL 151 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~ 151 (366)
+|..|++-|++|+. |. -..+|+.|++|.|+-|.++..- .+..+++|++|+|..|.|. .+-+ -+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 45666666666653 21 2356777888888888877432 3667778888888888776 3332 256778888888
Q ss_pred ccCCCCCCCChh-----hhhCCCCCCEEe
Q 017764 152 LDNNDFVGSLSP-----EIYKLQVLSESQ 175 (366)
Q Consensus 152 L~~N~l~g~iP~-----~l~~l~~L~~L~ 175 (366)
|..|.-.|.-+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887776654 245677777765
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.0011 Score=61.45 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=42.9
Q ss_pred CEEEEEccCCCCCCc--CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L 150 (366)
+|..|||.+|.|+.. +..-+.+|++|++|+|+.|.+...|-..-..+.+|++|.|.+..+...-- ..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 566666666666532 33334566666666666666654432221345566666666655543221 223344555555
Q ss_pred EccCC
Q 017764 151 LLDNN 155 (366)
Q Consensus 151 ~L~~N 155 (366)
+++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 55555
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.28 E-value=0.001 Score=62.77 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=71.8
Q ss_pred CEEEEEccCCCCCC----cCcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCCcc----c
Q 017764 74 KVVNLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPND----L 141 (366)
Q Consensus 74 ~v~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~----l 141 (366)
.+..+.+..|.+.- .+-..+..+++|++|||..|.|+-. +-..+..+++|+.|+++++.+...=-.. +
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 46667777776641 1223467788888888888888632 3345667778888888888776322111 1
Q ss_pred -CCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764 142 -GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 142 -~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
...++|++|.|.+|.++.. +-..+...+.|..|+|++|.|.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2357888888888887632 2224556788888888888883
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.25 E-value=0.0017 Score=68.25 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCEEEEEccCCCCCC-cCcccc-cCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764 73 GKVVNLNLKDLCLEG-TLAPEI-QSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l-~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 149 (366)
.+++.|++++..... .-+..+ ..|++|+.|.+.+=.+.. .+-....++++|..||+|+.+++ .+ ..+++|.+|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 368888888865431 112223 347899999999877642 23345568899999999999998 34 67889999999
Q ss_pred EEccCCCCCC-CChhhhhCCCCCCEEeccCCCCc
Q 017764 150 LLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 150 L~L~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|.+.+=.|.. ..-..+.+|++|++||+|.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9998877762 22347889999999999987765
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.22 E-value=0.012 Score=57.68 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCC-cCCCCCCcccCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHN-NFSGPLPNDLGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N-~l~g~lP~~l~~l~~L~~L 150 (366)
..++.|+++++.|. .+| .+ ..+|+.|++++ +.++ .+|..+ ..+|++|++++| .+. .+|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 35678888888776 455 22 24688888876 3443 556544 257888888877 443 4554 35555
Q ss_pred EccCCCC--CCCChhhhhCC------------------CCCCEEeccCCCCc
Q 017764 151 LLDNNDF--VGSLSPEIYKL------------------QVLSESQVDEGQLS 182 (366)
Q Consensus 151 ~L~~N~l--~g~iP~~l~~l------------------~~L~~L~l~~N~l~ 182 (366)
+|..|.. -+.+|..+..| .+|++|++++|...
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 5655543 13455544333 36777777776643
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.22 E-value=0.0031 Score=59.61 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCEEEEEccCCCCCCcCcc----cccCCCCcCEEEccCCCCCCC-------------CccccCCCCCCCeeeccCCcCCC
Q 017764 73 GKVVNLNLKDLCLEGTLAP----EIQSLTHIKSIILRNNSFSGI-------------IPEGFGELEELEVLDFGHNNFSG 135 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~-------------~P~~l~~l~~L~~L~Ls~N~l~g 135 (366)
++++.||||+|.|.-.-+. -+.....|++|.|.||.+.-. .-.-+..-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4899999999988643333 355678899999999987511 11223455678888888888863
Q ss_pred CCC-----cccCCCCCCcEEEccCCCCC--CC--ChhhhhCCCCCCEEeccCCCCc
Q 017764 136 PLP-----NDLGINHSLTILLLDNNDFV--GS--LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 136 ~lP-----~~l~~l~~L~~L~L~~N~l~--g~--iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
-+ ..+...+.|+.+.+..|.+. |. +-..+..+++|+.|||.+|-|+
T Consensus 172 -~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 -GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred -ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 22 22445567888888888764 11 1235677888888888888776
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0014 Score=60.73 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=66.7
Q ss_pred CCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCC-CChhhhhCCCCC
Q 017764 95 SLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVL 171 (366)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g-~iP~~l~~l~~L 171 (366)
..++++.|||.+|.++. .+-.-+.+|+.|++|+|+.|.+...|-..-..+.+|++|.|.+..+.- ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35789999999999983 233445689999999999999985443222456789999999888753 344567788999
Q ss_pred CEEeccCCCCc
Q 017764 172 SESQVDEGQLS 182 (366)
Q Consensus 172 ~~L~l~~N~l~ 182 (366)
+.|.++.|.+.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 99999999543
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.11 E-value=0.00015 Score=64.90 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=43.2
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|||+.|.+. .+-..+..++.|..||++.|.+. .+|..++++..+..+++..|.++ ..|.+++.+++++++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4555666555554 23334444555555555555554 44555555555555555555555 455555555555555555
Q ss_pred CCCCC
Q 017764 154 NNDFV 158 (366)
Q Consensus 154 ~N~l~ 158 (366)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 55443
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.71 E-value=0.0002 Score=64.14 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=79.8
Q ss_pred ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCC
Q 017764 91 PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV 170 (366)
Q Consensus 91 ~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~ 170 (366)
.++..+...+.||++.|++. .+-..|.-++.|..||++.|++. .+|.+++.+..+..+++..|+++ ..|.+++.++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 35777889999999999986 45567778899999999999998 79999999999999999999998 88999999999
Q ss_pred CCEEeccCCCCc
Q 017764 171 LSESQVDEGQLS 182 (366)
Q Consensus 171 L~~L~l~~N~l~ 182 (366)
++++++.+|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999876
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0036 Score=34.73 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=8.5
Q ss_pred CcEEEccCCCCCCCChhhh
Q 017764 147 LTILLLDNNDFVGSLSPEI 165 (366)
Q Consensus 147 L~~L~L~~N~l~g~iP~~l 165 (366)
|++|||++|+|+ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.61 E-value=0.0048 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=8.3
Q ss_pred cCEEEccCCCCCCCCcccc
Q 017764 99 IKSIILRNNSFSGIIPEGF 117 (366)
Q Consensus 99 L~~L~Ls~N~l~g~~P~~l 117 (366)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.55 E-value=0.027 Score=55.33 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=57.2
Q ss_pred CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCC-CCCCCCccccCCCCCCCeeeccCCcC--CCCCCcccCCC----
Q 017764 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNF--SGPLPNDLGIN---- 144 (366)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~~L~Ls~N~l--~g~lP~~l~~l---- 144 (366)
.+|+.|++++ +.++ .+|..+. .+|++|++++| .+. .+|. +|+.|++..|.+ -+.+|..+..|
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence 4688888887 3443 5555442 57888888887 444 4554 355555555442 12455444322
Q ss_pred --------------CCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCC
Q 017764 145 --------------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 145 --------------~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N 179 (366)
.+|++|++++|... .+|..+- .+|+.|+++.|
T Consensus 142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 142 YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 37888999888765 4444332 47888888776
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.42 E-value=0.029 Score=51.72 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCEEEEEccCCCCCCcCccc----ccCCCCcCEEEccCCCCCCC----Ccc---------ccCCCCCCCeeeccCCcCCC
Q 017764 73 GKVVNLNLKDLCLEGTLAPE----IQSLTHIKSIILRNNSFSGI----IPE---------GFGELEELEVLDFGHNNFSG 135 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~g~----~P~---------~l~~l~~L~~L~Ls~N~l~g 135 (366)
.+++.++|++|.+.-..|+. +..-+.|.+|.|++|.+.-. |-. -..+-+.|++++...|+|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 57889999999988777664 44567899999999987421 111 1234567889999999887
Q ss_pred CCCcc-----cCCCCCCcEEEccCCCCCCC-----ChhhhhCCCCCCEEeccCCCCc
Q 017764 136 PLPND-----LGINHSLTILLLDNNDFVGS-----LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 136 ~lP~~-----l~~l~~L~~L~L~~N~l~g~-----iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
.-+.. +..-..|+.+.+..|.+.-. +-..+..+.+|+.|||.+|-|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 33322 22235788888999877611 0113456789999999999887
No 66
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.15 E-value=0.084 Score=54.70 Aligned_cols=8 Identities=50% Similarity=0.422 Sum_probs=3.0
Q ss_pred cEEEccCC
Q 017764 148 TILLLDNN 155 (366)
Q Consensus 148 ~~L~L~~N 155 (366)
|+|-|-+|
T Consensus 409 Qhlllirn 416 (1102)
T KOG1924|consen 409 QHLLLIRN 416 (1102)
T ss_pred HHHHHHhh
Confidence 33333333
No 67
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=95.03 E-value=0.027 Score=47.09 Aligned_cols=15 Identities=47% Similarity=0.538 Sum_probs=6.7
Q ss_pred CCCceEEEehhhHHH
Q 017764 306 SSKHIAILGGVIGGA 320 (366)
Q Consensus 306 ~~~~~~i~~~vv~g~ 320 (366)
+.+...|++|||+|+
T Consensus 44 S~knknIVIGvVVGV 58 (154)
T PF04478_consen 44 SSKNKNIVIGVVVGV 58 (154)
T ss_pred CcCCccEEEEEEecc
Confidence 333444445555443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.40 E-value=0.043 Score=50.59 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=59.9
Q ss_pred CEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCCC----Cc-------cccCCCCCCCeeeccCCcCCCCCC
Q 017764 74 KVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IP-------EGFGELEELEVLDFGHNNFSGPLP 138 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P-------~~l~~l~~L~~L~Ls~N~l~g~lP 138 (366)
.++.++|++|-+... +-..+.+-.+|+..+++.-.. |. ++ ..+-.+++|+..+||+|-|.-..|
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567778888776532 233445556666666654322 22 11 234456777777777777765555
Q ss_pred cc----cCCCCCCcEEEccCCCCCCCChh--------------hhhCCCCCCEEeccCCCCc
Q 017764 139 ND----LGINHSLTILLLDNNDFVGSLSP--------------EIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 139 ~~----l~~l~~L~~L~L~~N~l~g~iP~--------------~l~~l~~L~~L~l~~N~l~ 182 (366)
.. +..-+.|.+|.|++|.+- .+-. ...+-+.|+.+....|+|.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 43 334466777777777653 2211 1223456677777777664
No 69
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.09 E-value=0.026 Score=35.39 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=19.3
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhhhccccc
Q 017764 309 HIAILGGVIGGAILLVATVGIYLCRCNKVT 338 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~~~~k~~ 338 (366)
..+|+++|+.|.+++++.++.+.|+++|-.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 346777777776666666666666555543
No 70
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.45 E-value=0.049 Score=63.87 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=52.2
Q ss_pred EccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCC
Q 017764 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
||++|+|+-.-+..|..+.+|+.|+|++|.|. |+|.+..+. |.............+.|..+..++|+.+...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~------CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------CDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc------cccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCC
Confidence 68899998444456788999999999999887 999887665 53222111122345789999999999885443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.25 E-value=0.2 Score=40.40 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=50.1
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.+.+.. .+...-...|.++++|+.+++.++ +...--..|.++.+|+.+.+.+ .+...-...|..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 577777764 455333334777778888888775 5533345677777788888865 3331222345667888888886
Q ss_pred CCCCCCCChh-hhhCCCCCCEEeccC
Q 017764 154 NNDFVGSLSP-EIYKLQVLSESQVDE 178 (366)
Q Consensus 154 ~N~l~g~iP~-~l~~l~~L~~L~l~~ 178 (366)
.| +. .++. .|.+. +|+.+.+..
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC
Confidence 65 44 3333 45555 777777654
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.0071 Score=55.77 Aligned_cols=86 Identities=24% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChh--hhhCCCCCCE
Q 017764 96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSE 173 (366)
Q Consensus 96 L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~ 173 (366)
|.+.+.|++=++.|+.. .-...|+.|++|.|+-|.++.. ..+..+++|+.|+|..|.|. .+-+ -+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45677788888888743 2356899999999999999832 35778899999999999987 4433 3578999999
Q ss_pred EeccCCCCcccCC
Q 017764 174 SQVDEGQLSSAAK 186 (366)
Q Consensus 174 L~l~~N~l~g~iP 186 (366)
|.|..|.=.|.-+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 9999999877554
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.019 Score=53.58 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCCCcEEEccCCC-CCCCChhhhhCCCCCCEEeccCCC
Q 017764 144 NHSLTILLLDNND-FVGSLSPEIYKLQVLSESQVDEGQ 180 (366)
Q Consensus 144 l~~L~~L~L~~N~-l~g~iP~~l~~l~~L~~L~l~~N~ 180 (366)
+++|.+|||++|. ++...-..|.+++.|++|.++.++
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 4555666665553 222222345555666666655543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.16 E-value=0.088 Score=27.16 Aligned_cols=10 Identities=50% Similarity=0.501 Sum_probs=3.2
Q ss_pred CcEEEccCCC
Q 017764 147 LTILLLDNND 156 (366)
Q Consensus 147 L~~L~L~~N~ 156 (366)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 75
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.80 E-value=0.19 Score=32.17 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred CCCceEEEehhhHHHHHHHHHHHHHhh
Q 017764 306 SSKHIAILGGVIGGAILLVATVGIYLC 332 (366)
Q Consensus 306 ~~~~~~i~~~vv~g~~v~~~~~~~~~~ 332 (366)
.+...+|..+|+..++++++++.++++
T Consensus 7 ~~~~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred CCceEEEEEEEEechHHHHHHHHHHhh
Confidence 344566777776666666665544444
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.0082 Score=55.90 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=64.4
Q ss_pred CcCEEEccCCCCCCC-CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCC-CCCC-ChhhhhCCCCCCEE
Q 017764 98 HIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND-FVGS-LSPEIYKLQVLSES 174 (366)
Q Consensus 98 ~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~-l~g~-iP~~l~~l~~L~~L 174 (366)
.|++|||++..++.. +-.-+..+.+|+.|.|.++++...+-..+..-.+|+.|+|+..+ |+.. +.-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588999998887632 22345678889999999999998887888888899999998753 4421 12246788899999
Q ss_pred eccCCCCcc
Q 017764 175 QVDEGQLSS 183 (366)
Q Consensus 175 ~l~~N~l~g 183 (366)
+|+...++-
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 998877653
No 77
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=91.49 E-value=1.3 Score=41.58 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=20.1
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhhhc---cccceeeeeee
Q 017764 309 HIAILGGVIGGAILLVATVGIYLCRC---NKVTIISKVIY 345 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~~~---~k~~~~~~~~~ 345 (366)
...+++++++.++++++++++.+||+ +......|+=|
T Consensus 197 ~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~rlaqk~DY 236 (341)
T PF06809_consen 197 GLTLVLIVVCCVAGAAALIVAGYCWYRLQREIRLAQKVDY 236 (341)
T ss_pred CeeeehhHHHHHHHHHHHHHhhheEEEecccccccccccc
Confidence 33444444555555555555555543 55666677767
No 78
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=91.22 E-value=0.063 Score=37.96 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=0.4
Q ss_pred eEEEehhhHHHHHHHHHHHHHhhhcc
Q 017764 310 IAILGGVIGGAILLVATVGIYLCRCN 335 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~~~~~~~~ 335 (366)
.++++|+|+|+++++++++++++|++
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~r 37 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMR 37 (64)
T ss_dssp -------------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555545443
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.06 E-value=0.089 Score=42.67 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=12.7
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 309 HIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
...|+.||++|++++++ +++|+++|
T Consensus 66 i~~Ii~gv~aGvIg~Il-li~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL-LISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH-HHHHHHHH
Confidence 34566666666544333 44444444
No 80
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=90.55 E-value=0.2 Score=44.32 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=14.9
Q ss_pred CCceEEEehhhHHHHHHHHH-HHHHhhh
Q 017764 307 SKHIAILGGVIGGAILLVAT-VGIYLCR 333 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~-~~~~~~~ 333 (366)
+....|++|||+|++.++++ ++++++|
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44556777777776555544 3333344
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.38 E-value=0.65 Score=37.27 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=51.6
Q ss_pred cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L 171 (366)
.|.+.++|+.+.+.. .+...-...|.++.+|+.+.+..+ +...--..|.++.+|+.+.+.+ .+...-...|..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 366778899999885 566444567888889999999886 6633234577887899999976 4431223456778999
Q ss_pred CEEeccCC
Q 017764 172 SESQVDEG 179 (366)
Q Consensus 172 ~~L~l~~N 179 (366)
+.+++..|
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 99999765
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.14 E-value=0.29 Score=27.91 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=9.1
Q ss_pred CCCcEEEccCCCCCCCChh
Q 017764 145 HSLTILLLDNNDFVGSLSP 163 (366)
Q Consensus 145 ~~L~~L~L~~N~l~g~iP~ 163 (366)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 3443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.14 E-value=0.29 Score=27.91 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=9.1
Q ss_pred CCCcEEEccCCCCCCCChh
Q 017764 145 HSLTILLLDNNDFVGSLSP 163 (366)
Q Consensus 145 ~~L~~L~L~~N~l~g~iP~ 163 (366)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 3443
No 84
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=89.51 E-value=0.42 Score=37.15 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=8.6
Q ss_pred eEEEehhhHHHHHHHHH
Q 017764 310 IAILGGVIGGAILLVAT 326 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~ 326 (366)
.+|++++|++++++.++
T Consensus 66 gaiagi~vg~~~~v~~l 82 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGL 82 (96)
T ss_pred ccEEEEEeehhhHHHHH
Confidence 45666555554444333
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.79 E-value=0.45 Score=27.13 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=12.7
Q ss_pred CCCCCeeeccCCcCCCCCCcc
Q 017764 120 LEELEVLDFGHNNFSGPLPND 140 (366)
Q Consensus 120 l~~L~~L~Ls~N~l~g~lP~~ 140 (366)
|++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777776 45543
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.79 E-value=0.45 Score=27.13 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=12.7
Q ss_pred CCCCCeeeccCCcCCCCCCcc
Q 017764 120 LEELEVLDFGHNNFSGPLPND 140 (366)
Q Consensus 120 l~~L~~L~Ls~N~l~g~lP~~ 140 (366)
|++|++|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777776 45543
No 87
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=87.11 E-value=3.3 Score=36.22 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=8.3
Q ss_pred EEehhhHHHHHHHHH
Q 017764 312 ILGGVIGGAILLVAT 326 (366)
Q Consensus 312 i~~~vv~g~~v~~~~ 326 (366)
=.+..|||+++++.+
T Consensus 159 D~~SFiGGIVL~LGv 173 (186)
T PF05283_consen 159 DAASFIGGIVLTLGV 173 (186)
T ss_pred chhhhhhHHHHHHHH
Confidence 344566665555544
No 88
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=84.85 E-value=0.65 Score=40.44 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=16.0
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhh
Q 017764 309 HIAILGGVIGGAILLVATVGIYLC 332 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~ 332 (366)
...|+++||+|++++++++++++|
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~C 100 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFCC 100 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhee
Confidence 456777888877766665665553
No 89
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=84.82 E-value=1.3 Score=45.45 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=18.4
Q ss_pred CCceEEEehhhHHHHHHHHH-HHHHhhhccc
Q 017764 307 SKHIAILGGVIGGAILLVAT-VGIYLCRCNK 336 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~-~~~~~~~~~k 336 (366)
....||++||++-++|+++| ++++++.|+|
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 44789999998776655555 3333344433
No 90
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=84.41 E-value=11 Score=32.37 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.6
Q ss_pred eccCCc
Q 017764 345 YGANRS 350 (366)
Q Consensus 345 ~~~~~~ 350 (366)
||-...
T Consensus 129 Ygvl~~ 134 (163)
T PF06679_consen 129 YGVLTT 134 (163)
T ss_pred ecccCC
Confidence 444433
No 91
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=83.32 E-value=0.89 Score=37.38 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.9
Q ss_pred eeeeee
Q 017764 340 ISKVIY 345 (366)
Q Consensus 340 ~~~~~~ 345 (366)
-...+|
T Consensus 30 G~~P~~ 35 (130)
T PF12273_consen 30 GLQPIY 35 (130)
T ss_pred CCCCcC
Confidence 344555
No 92
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=82.15 E-value=1.3 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=19.1
Q ss_pred CCCCceEEEehhhHHHHHHHHHHHHHhh
Q 017764 305 SSSKHIAILGGVIGGAILLVATVGIYLC 332 (366)
Q Consensus 305 ~~~~~~~i~~~vv~g~~v~~~~~~~~~~ 332 (366)
+..+....++|||++++++.++++++++
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777888887777777666553
No 93
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=81.12 E-value=1.4 Score=40.88 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=10.9
Q ss_pred eEEEehhhHHHHHHHHH
Q 017764 310 IAILGGVIGGAILLVAT 326 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~ 326 (366)
..|++|+++|++++.++
T Consensus 213 W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLGLL 229 (278)
T ss_pred EEEEEEehHHHHHHHHH
Confidence 33466777777766666
No 94
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=80.50 E-value=4.9 Score=31.94 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=10.4
Q ss_pred EEEehhhHHHHHHHHH
Q 017764 311 AILGGVIGGAILLVAT 326 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~ 326 (366)
.++.+||||.+++.+.
T Consensus 84 ~aLp~VIGGLcaL~La 99 (126)
T PF03229_consen 84 FALPLVIGGLCALTLA 99 (126)
T ss_pred cchhhhhhHHHHHHHH
Confidence 5778888885544433
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.88 E-value=0.36 Score=27.01 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=4.2
Q ss_pred CCcEEEccCCCC
Q 017764 146 SLTILLLDNNDF 157 (366)
Q Consensus 146 ~L~~L~L~~N~l 157 (366)
+|+.|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=77.32 E-value=2.1 Score=33.22 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=24.2
Q ss_pred CCCCCCceEEEehhhHHHHHHHHHHHHHhhhcccc
Q 017764 303 GGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKV 337 (366)
Q Consensus 303 ~~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~~k~ 337 (366)
.........|.+++++.+.+++.+++|++++|+|+
T Consensus 62 ~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~ka 96 (96)
T PTZ00382 62 GLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGKA 96 (96)
T ss_pred CcccccEEEEEeehhhHHHHHHHHHhheeEEeecC
Confidence 34445667788887777777777777776666653
No 97
>PF15345 TMEM51: Transmembrane protein 51
Probab=74.15 E-value=5.3 Score=35.94 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=18.0
Q ss_pred CCCCceEEEehhhHHHHHHHHHHHHHhhhccc
Q 017764 305 SSSKHIAILGGVIGGAILLVATVGIYLCRCNK 336 (366)
Q Consensus 305 ~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~~k 336 (366)
..+.++..++.|++|+.|+++++.+.+..|.|
T Consensus 52 ~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~K 83 (233)
T PF15345_consen 52 NLKSKTFSVAYVLVGSGVALLLLSICLSIRDK 83 (233)
T ss_pred cccceeEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 34445566666666665555555555555533
No 98
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=73.98 E-value=4.3 Score=42.63 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=4.7
Q ss_pred HHHHhhhccc
Q 017764 327 VGIYLCRCNK 336 (366)
Q Consensus 327 ~~~~~~~~~k 336 (366)
++.++.||||
T Consensus 862 Ala~lLrRRr 871 (872)
T COG3889 862 ALALLLRRRR 871 (872)
T ss_pred HHHHHHHhhc
Confidence 3344455555
No 99
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=73.70 E-value=1.5 Score=32.42 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=8.3
Q ss_pred EEehhhHHHHHHHHHH
Q 017764 312 ILGGVIGGAILLVATV 327 (366)
Q Consensus 312 i~~~vv~g~~v~~~~~ 327 (366)
|++++++|++++++++
T Consensus 2 ii~~~~~g~~~ll~~v 17 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLV 17 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHhh
Confidence 4455566655554443
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.04 E-value=2.9 Score=24.11 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=6.3
Q ss_pred CCCeeeccCCcCC
Q 017764 122 ELEVLDFGHNNFS 134 (366)
Q Consensus 122 ~L~~L~Ls~N~l~ 134 (366)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555443
No 101
>PF15069 FAM163: FAM163 family
Probab=72.88 E-value=4.2 Score=33.71 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=14.6
Q ss_pred CceEEEehhhHHHHHHHHHHHHHhh
Q 017764 308 KHIAILGGVIGGAILLVATVGIYLC 332 (366)
Q Consensus 308 ~~~~i~~~vv~g~~v~~~~~~~~~~ 332 (366)
.+++|.+||+++++++.+++++-.|
T Consensus 4 GTvVItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 4 GTVVITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHH
Confidence 3567777777766655555443333
No 102
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=72.39 E-value=5.8 Score=35.24 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCCCCCCceEEEehhhHHHHHHHHHHHHHhhh
Q 017764 302 SGGSSSKHIAILGGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 302 ~~~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~ 333 (366)
.+...+...+|++|+++.++|+++++++-.||
T Consensus 33 ~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 33 SKDYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred cccceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 34667778899999999999999999999887
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.16 E-value=2.6 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.8
Q ss_pred CCeeeccCCcCC
Q 017764 123 LEVLDFGHNNFS 134 (366)
Q Consensus 123 L~~L~Ls~N~l~ 134 (366)
|+.|++++|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444555444
No 104
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=72.13 E-value=1.9 Score=35.45 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=3.1
Q ss_pred EEEehhh
Q 017764 311 AILGGVI 317 (366)
Q Consensus 311 ~i~~~vv 317 (366)
|++.+||
T Consensus 2 W~l~~ii 8 (130)
T PF12273_consen 2 WVLFAII 8 (130)
T ss_pred eeeHHHH
Confidence 4444443
No 105
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=70.95 E-value=1.3 Score=44.11 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCceEEEehhhHHHHHHHHHHHHHhhhccccceee
Q 017764 305 SSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTIIS 341 (366)
Q Consensus 305 ~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~~k~~~~~ 341 (366)
+.....++++|++++++++++++.+.+++++|...+.
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 3344556666666665555555444444433333333
No 106
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.69 E-value=1.7 Score=35.33 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.0
Q ss_pred CceEEEehhhHHHHHHHHHHHHHhhhccccceee
Q 017764 308 KHIAILGGVIGGAILLVATVGIYLCRCNKVTIIS 341 (366)
Q Consensus 308 ~~~~i~~~vv~g~~v~~~~~~~~~~~~~k~~~~~ 341 (366)
...+ +++||.|+++.++.+++++.||.|..+-.
T Consensus 62 s~~~-i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPA-IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccc-eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444 45667777788888888888998765544
No 107
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=70.02 E-value=1.8 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=14.5
Q ss_pred EEEehhhHHHHHHHHHHHHHhhhccc
Q 017764 311 AILGGVIGGAILLVATVGIYLCRCNK 336 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~~~~~~~~~~k 336 (366)
|-+.+..||+++++++++++.|+|.|
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K 67 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAK 67 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhh
Confidence 33333346766666666666665533
No 108
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=69.02 E-value=5.2 Score=38.03 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=18.0
Q ss_pred eEEEehhhHHHHHHHHHHHHHhhhcc
Q 017764 310 IAILGGVIGGAILLVATVGIYLCRCN 335 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~~~~~~~~ 335 (366)
..|++.|+|.++++++++.++++||+
T Consensus 440 tTIlwTVaGVvIAiVALV~l~~V~rr 465 (465)
T TIGR03154 440 TTLYVTIIGVVIAIVALVILYVVFRR 465 (465)
T ss_pred eeEEEEeehhHHHHHHHhheeEEecC
Confidence 45777777777777777777666653
No 109
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=68.98 E-value=7.5 Score=34.46 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=12.0
Q ss_pred EEEehhhHHHHHHHHHHHHHhhhc
Q 017764 311 AILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
.+|+.|+.|.+++++++...+|+|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~ 124 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCC 124 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHh
Confidence 556566666445544444443433
No 110
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=68.84 E-value=20 Score=27.28 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=15.2
Q ss_pred hhccccceeeeeeeccCCcccc
Q 017764 332 CRCNKVTIISKVIYGANRSIEN 353 (366)
Q Consensus 332 ~~~~k~~~~~~~~~~~~~~~~~ 353 (366)
++.+|.+..+-..||.-.-..+
T Consensus 66 ~KAkrqrsTeEigFG~tp~r~~ 87 (91)
T PF01708_consen 66 LKAKRQRSTEEIGFGNTPARPS 87 (91)
T ss_pred eeeccCCceeeeeeCCCCCCCC
Confidence 3458888888888876544443
No 111
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=67.29 E-value=1.8 Score=40.62 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=0.0
Q ss_pred ceEEEehhhHHHHHH
Q 017764 309 HIAILGGVIGGAILL 323 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~ 323 (366)
.++|.++||+.++++
T Consensus 147 ~T~IpaVVI~~iLLI 161 (290)
T PF05454_consen 147 HTFIPAVVIAAILLI 161 (290)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555554443333
No 112
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=66.93 E-value=2.7 Score=38.90 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhccccce
Q 017764 319 GAILLVATVGIYLCRCNKVTI 339 (366)
Q Consensus 319 g~~v~~~~~~~~~~~~~k~~~ 339 (366)
.++|+++++.|++++|+|.+|
T Consensus 270 il~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 270 ILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 344555556677778888776
No 113
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.34 E-value=4.7 Score=23.45 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=7.5
Q ss_pred CcCEEEccCCCCC
Q 017764 98 HIKSIILRNNSFS 110 (366)
Q Consensus 98 ~L~~L~Ls~N~l~ 110 (366)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666553
No 114
>PHA03281 envelope glycoprotein E; Provisional
Probab=66.07 E-value=11 Score=38.09 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=16.2
Q ss_pred hccccceeeeeeec--------cCCcccccchhhhcccc
Q 017764 333 RCNKVTIISKVIYG--------ANRSIENSQPVAKKRRY 363 (366)
Q Consensus 333 ~~~k~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 363 (366)
+++|+.+.-|..|| +.++-+.....+.+|.|
T Consensus 582 ~~~~~~~~~~~~~~~s~~Y~~lP~~d~ed~~~~~~~~~~ 620 (642)
T PHA03281 582 FGHKAYRSDKAAYGQSMYYAGLPVDDFEDDEETDTDEEF 620 (642)
T ss_pred hhhheeeccccccccccccccCCCcccccccccchhhhh
Confidence 44555555444442 34455556666666655
No 115
>PTZ00370 STEVOR; Provisional
Probab=65.84 E-value=2.8 Score=38.87 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhccccce
Q 017764 320 AILLVATVGIYLCRCNKVTI 339 (366)
Q Consensus 320 ~~v~~~~~~~~~~~~~k~~~ 339 (366)
.+|+++++.|++++|+|.+|
T Consensus 267 l~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 267 LAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHhhcchh
Confidence 34555556677778888766
No 116
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.75 E-value=15 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=18.1
Q ss_pred ceEEEehhhHHHHHHHHH--HHHHhhhcccc
Q 017764 309 HIAILGGVIGGAILLVAT--VGIYLCRCNKV 337 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~--~~~~~~~~~k~ 337 (366)
-..|+..||+|+++++++ +++|+|+.+..
T Consensus 12 PGlIVLlvV~g~ll~flvGnyvlY~Yaqk~l 42 (69)
T PF04689_consen 12 PGLIVLLVVAGLLLVFLVGNYVLYVYAQKTL 42 (69)
T ss_pred CCeEEeehHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346777778886666665 56666654433
No 117
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=60.46 E-value=6.8 Score=38.66 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=13.8
Q ss_pred CCceEEEehhhHHHHHHHHHHHHHh
Q 017764 307 SKHIAILGGVIGGAILLVATVGIYL 331 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~~~~ 331 (366)
-...+|+++.|+.++||-.+|.++.
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHh
Confidence 3455676666666555555544333
No 118
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=60.40 E-value=10 Score=31.87 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCCCCCCceEEEehhhHHHHHHHHHHHHH
Q 017764 301 KSGGSSSKHIAILGGVIGGAILLVATVGIY 330 (366)
Q Consensus 301 ~~~~~~~~~~~i~~~vv~g~~v~~~~~~~~ 330 (366)
-+...+...+.+++||-+ ++++++++++|
T Consensus 43 lS~knknIVIGvVVGVGg-~ill~il~lvf 71 (154)
T PF04478_consen 43 LSSKNKNIVIGVVVGVGG-PILLGILALVF 71 (154)
T ss_pred CCcCCccEEEEEEecccH-HHHHHHHHhhe
Confidence 334445667788888644 45544443333
No 119
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=59.79 E-value=3.8 Score=40.62 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=47.1
Q ss_pred cccCCCCcCEEEccCC-CCCCCCc----cccCCCCCCCeeeccCCc-CCCCCCcccC-CCCCCcEEEccCCC-CCCCC-h
Q 017764 92 EIQSLTHIKSIILRNN-SFSGIIP----EGFGELEELEVLDFGHNN-FSGPLPNDLG-INHSLTILLLDNND-FVGSL-S 162 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N-~l~g~~P----~~l~~l~~L~~L~Ls~N~-l~g~lP~~l~-~l~~L~~L~L~~N~-l~g~i-P 162 (366)
.......|+.|+++++ ......+ .....+.+|+.|+++... ++...-..+. .+++|+.|.+.++. ++..- -
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3455677777777762 1111111 223345677777777766 3322222222 25677777766555 33211 1
Q ss_pred hhhhCCCCCCEEeccCCCC
Q 017764 163 PEIYKLQVLSESQVDEGQL 181 (366)
Q Consensus 163 ~~l~~l~~L~~L~l~~N~l 181 (366)
.....+++|++|+++++..
T Consensus 289 ~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhcCcccEEeeecCcc
Confidence 1234566778887776554
No 120
>PHA03291 envelope glycoprotein I; Provisional
Probab=59.06 E-value=90 Score=30.03 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=10.4
Q ss_pred hccccceeeeeeeccC
Q 017764 333 RCNKVTIISKVIYGAN 348 (366)
Q Consensus 333 ~~~k~~~~~~~~~~~~ 348 (366)
+|+|-..-..-||.+.
T Consensus 313 ~~rRr~r~~~~IY~P~ 328 (401)
T PHA03291 313 RCRRRRRRPARIYRPP 328 (401)
T ss_pred hhhcccCCcCcccCCC
Confidence 3466666677888655
No 121
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.09 E-value=1.5 Score=38.81 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=21.8
Q ss_pred CCCcEEEccCCC-CCCCChhhhhCCCCCCEEeccCC
Q 017764 145 HSLTILLLDNND-FVGSLSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 145 ~~L~~L~L~~N~-l~g~iP~~l~~l~~L~~L~l~~N 179 (366)
++|+.|+|++|. +|..=-..+..+++|+.|.+.+=
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 577788887664 44222245667777777776553
No 122
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=55.84 E-value=13 Score=27.80 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.5
Q ss_pred eEEEehhhHHHHHHHHHHH
Q 017764 310 IAILGGVIGGAILLVATVG 328 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~ 328 (366)
.|+++++.+|++++++.++
T Consensus 15 ~~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeeHHHhhccHHHHHHHHH
Confidence 4666666666555554433
No 123
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=55.55 E-value=37 Score=37.39 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCCCceEEEehhhHHHHHHHHHHHHHhhh
Q 017764 304 GSSSKHIAILGGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 304 ~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~ 333 (366)
.+++.++.+++||+++++++++++.+.++.
T Consensus 1509 ResssttGmVvGIvaAaaLcILilL~am~k 1538 (1591)
T KOG3514|consen 1509 RESSSTTGMVVGIVAAAALCILILLYAMYK 1538 (1591)
T ss_pred ecCCCccchhhHHHHHHHHHHHHHHhhccc
Confidence 345667778888888777777776666553
No 124
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=55.43 E-value=10 Score=28.14 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=17.4
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 309 HIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
....++|+|+|-+++-++++.++|+|
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~c 57 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYC 57 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888666666655555555
No 125
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.33 E-value=4.6 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=0.5
Q ss_pred EEEehhhHHHHHHHHH-HHHHhhhcccccee
Q 017764 311 AILGGVIGGAILLVAT-VGIYLCRCNKVTII 340 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~-~~~~~~~~~k~~~~ 340 (366)
-+++++|+|+++.+++ ++++++...|..--
T Consensus 9 ~vlaavIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ----------------------------S--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777776655555 44554555655433
No 126
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.97 E-value=7.9 Score=39.35 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCCcCEEEccCCCCCCC--CccccCCCCCCCeeeccCC--cCCCCCCcccCCC--CCCcEEEccCCCCCCCC
Q 017764 95 SLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHN--NFSGPLPNDLGIN--HSLTILLLDNNDFVGSL 161 (366)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~--~P~~l~~l~~L~~L~Ls~N--~l~g~lP~~l~~l--~~L~~L~L~~N~l~g~i 161 (366)
+.+.+..++|++|++... +..--..-++|..|+|++| .+. .-.++.++ ..|+.|.|.+|.+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 345566667777776521 0111112356777777777 322 11223322 34677777777765443
No 127
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.92 E-value=7.9 Score=36.72 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=10.9
Q ss_pred EEehhhHHHHHHHHH--HHHHhhhcccc
Q 017764 312 ILGGVIGGAILLVAT--VGIYLCRCNKV 337 (366)
Q Consensus 312 i~~~vv~g~~v~~~~--~~~~~~~~~k~ 337 (366)
++-++||++++++++ +++|+++|+|.
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 333444444433333 33444445443
No 128
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=51.56 E-value=17 Score=21.34 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=8.7
Q ss_pred ehhhHHHHHHHHHHH
Q 017764 314 GGVIGGAILLVATVG 328 (366)
Q Consensus 314 ~~vv~g~~v~~~~~~ 328 (366)
++||+|++++++++.
T Consensus 3 ~~vi~g~llv~lLl~ 17 (29)
T PRK14750 3 FSIVCGALLVLLLLG 17 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777655555543
No 129
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=51.39 E-value=3.7 Score=38.75 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=17.1
Q ss_pred CceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 308 KHIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 308 ~~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
...+|++.||+-++.+++|++||+.+|
T Consensus 254 ~~t~I~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 254 LTTAIIASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776666666666666544
No 130
>PF15102 TMEM154: TMEM154 protein family
Probab=50.81 E-value=51 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=14.8
Q ss_pred ceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 309 HIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
...|++..|.++++++++++++.++|
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~k 83 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYK 83 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEe
Confidence 45677775666555555555444443
No 131
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.45 E-value=20 Score=27.14 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=14.4
Q ss_pred EEehhhHHHHHHHHHHHHHhhhccccceeeeeee
Q 017764 312 ILGGVIGGAILLVATVGIYLCRCNKVTIISKVIY 345 (366)
Q Consensus 312 i~~~vv~g~~v~~~~~~~~~~~~~k~~~~~~~~~ 345 (366)
+-..||+|.++++++..++ | |.|...-++.||
T Consensus 35 m~~lvI~~iFil~Vilwfv-C-C~kRkrsRrPIY 66 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFV-C-CKKRKRSRRPIY 66 (94)
T ss_pred hhHHHHHHHHHHHHHHHHH-H-HHHhhhccCCcc
Confidence 4456666644444433222 2 233333345566
No 132
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=47.15 E-value=17 Score=31.52 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=2.6
Q ss_pred HHhhhcc
Q 017764 329 IYLCRCN 335 (366)
Q Consensus 329 ~~~~~~~ 335 (366)
++++++.
T Consensus 94 ~Iv~~~C 100 (179)
T PF13908_consen 94 LIVCFCC 100 (179)
T ss_pred hHhhhee
Confidence 3333333
No 133
>PHA03265 envelope glycoprotein D; Provisional
Probab=47.14 E-value=8.8 Score=36.64 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=10.6
Q ss_pred eEEEehhhHHHHHHHHHHHHHhhhcccc
Q 017764 310 IAILGGVIGGAILLVATVGIYLCRCNKV 337 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~~~~~~~~k~ 337 (366)
.+++++-|+|.+++- +++++|+|+|.
T Consensus 351 g~~ig~~i~glv~vg--~il~~~~rr~k 376 (402)
T PHA03265 351 GISVGLGIAGLVLVG--VILYVCLRRKK 376 (402)
T ss_pred ceEEccchhhhhhhh--HHHHHHhhhhh
Confidence 344444444432222 23444555443
No 134
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=46.29 E-value=6.6 Score=36.86 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred CceEEEehhhHHHHHHHHH-HHHHhhhc
Q 017764 308 KHIAILGGVIGGAILLVAT-VGIYLCRC 334 (366)
Q Consensus 308 ~~~~i~~~vv~g~~v~~~~-~~~~~~~~ 334 (366)
...++...|.+.+++++++ +++++|.|
T Consensus 142 ~d~yL~T~IpaVVI~~iLLIA~iIa~ic 169 (290)
T PF05454_consen 142 SDDYLHTFIPAVVIAAILLIAGIIACIC 169 (290)
T ss_dssp ----------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666655444444444 33444444
No 135
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=45.57 E-value=21 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=12.0
Q ss_pred eEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 310 IAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
.+|++.++.|+++ +++++.+.+++
T Consensus 9 GVIlVF~lVglv~-i~iva~~iYRK 32 (43)
T PF08114_consen 9 GVILVFCLVGLVG-IGIVALFIYRK 32 (43)
T ss_pred CeeeehHHHHHHH-HHHHHHHHHHH
Confidence 3567666666433 33334444443
No 136
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=44.56 E-value=22 Score=29.55 Aligned_cols=15 Identities=13% Similarity=0.576 Sum_probs=7.8
Q ss_pred EEehhhHHHHHHHHH
Q 017764 312 ILGGVIGGAILLVAT 326 (366)
Q Consensus 312 i~~~vv~g~~v~~~~ 326 (366)
+++|||.|+++++.+
T Consensus 62 AIaGIVfgiVfimgv 76 (155)
T PF10873_consen 62 AIAGIVFGIVFIMGV 76 (155)
T ss_pred eeeeeehhhHHHHHH
Confidence 445555665554444
No 137
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=44.22 E-value=7.5 Score=33.00 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=0.0
Q ss_pred ceEEEehhhHHHHHHHHH
Q 017764 309 HIAILGGVIGGAILLVAT 326 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~ 326 (366)
.++-++|||.|+++.+.+
T Consensus 127 ~T~tLVGIIVGVLlaIG~ 144 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGF 144 (162)
T ss_dssp ------------------
T ss_pred ceeeeeeehhhHHHHHHH
Confidence 344444555554544433
No 138
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.05 E-value=7.7 Score=36.79 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhc
Q 017764 320 AILLVATVGIYLCRC 334 (366)
Q Consensus 320 ~~v~~~~~~~~~~~~ 334 (366)
+++++++-+|.-.|.
T Consensus 285 vlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 285 VLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHhheeEeccc
Confidence 344555555554444
No 139
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=43.42 E-value=6.5 Score=38.95 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=60.8
Q ss_pred CCEEEEEccCC-CCCCcC----cccccCCCCcCEEEccCCC-CCCCCccccC-CCCCCCeeeccCCc-CCCCCCcc-cCC
Q 017764 73 GKVVNLNLKDL-CLEGTL----APEIQSLTHIKSIILRNNS-FSGIIPEGFG-ELEELEVLDFGHNN-FSGPLPND-LGI 143 (366)
Q Consensus 73 ~~v~~L~L~~n-~l~g~~----p~~l~~L~~L~~L~Ls~N~-l~g~~P~~l~-~l~~L~~L~Ls~N~-l~g~lP~~-l~~ 143 (366)
..++.|+++++ ...... ......+..|+.|+++... ++...-..+. .+++|+.|.+.++. ++..--.. ...
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 46888888863 111111 1234456889999999887 5433222222 27789999977666 44221112 235
Q ss_pred CCCCcEEEccCCCCCCC--ChhhhhCCCCCCEEec
Q 017764 144 NHSLTILLLDNNDFVGS--LSPEIYKLQVLSESQV 176 (366)
Q Consensus 144 l~~L~~L~L~~N~l~g~--iP~~l~~l~~L~~L~l 176 (366)
+++|+.|+|+.+...+. +.....++++|+.|.+
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 78899999998875421 2233445666666543
No 140
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=42.97 E-value=47 Score=31.42 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.7
Q ss_pred CCCCCCCceEEEehhhHHHHHHHHHHH
Q 017764 302 SGGSSSKHIAILGGVIGGAILLVATVG 328 (366)
Q Consensus 302 ~~~~~~~~~~i~~~vv~g~~v~~~~~~ 328 (366)
+.+.......|++..++|++.++++.+
T Consensus 193 ~~~d~l~lv~Iv~~cvaG~aAliva~~ 219 (341)
T PF06809_consen 193 SHGDGLTLVLIVVCCVAGAAALIVAGY 219 (341)
T ss_pred CCCCCeeeehhHHHHHHHHHHHHHhhh
Confidence 335566667788888888777776655
No 141
>PHA03281 envelope glycoprotein E; Provisional
Probab=39.90 E-value=50 Score=33.58 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=20.6
Q ss_pred CCceEEEehhhHHHHHHHHHHHHHhhhccccce
Q 017764 307 SKHIAILGGVIGGAILLVATVGIYLCRCNKVTI 339 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~~~~~~~~k~~~ 339 (366)
.....+++++++|.++++++.++++..|.+...
T Consensus 550 ~~p~~~y~~l~~~~a~~~ll~l~~~~~c~~~~~ 582 (642)
T PHA03281 550 TFPFKRYAAITGGFAALALLCLAIALICTAKKF 582 (642)
T ss_pred CCCeEeehhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 334567778888877777665655566644333
No 142
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.02 E-value=17 Score=37.12 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=41.4
Q ss_pred CCEEEEEccCCCCCCc--CcccccCCCCcCEEEccCC--CCCCCCccccCCC--CCCCeeeccCCcCCCC
Q 017764 73 GKVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNN--SFSGIIPEGFGEL--EELEVLDFGHNNFSGP 136 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N--~l~g~~P~~l~~l--~~L~~L~Ls~N~l~g~ 136 (366)
..|..|+|++|+|... +..--...++|..|+|++| .+.. -.++..+ ..|++|.|.+|.+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4689999999998631 2222334578999999999 4331 2233332 3578999999988754
No 143
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=38.97 E-value=44 Score=22.58 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHhhhccc
Q 017764 315 GVIGGAILLVATVGIYLCRCNK 336 (366)
Q Consensus 315 ~vv~g~~v~~~~~~~~~~~~~k 336 (366)
.++.+++++++++.+.+|.-.|
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K 25 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLK 25 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666564444
No 144
>PTZ00046 rifin; Provisional
Probab=38.10 E-value=9.4 Score=36.82 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=18.5
Q ss_pred CCceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 307 SKHIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
+..++|++.||+-++.+++|+++|+.-|
T Consensus 312 ~~~taIiaSiiAIvVIVLIMvIIYLILR 339 (358)
T PTZ00046 312 ILQTAIIASIVAIVVIVLIMVIIYLILR 339 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888777666666666666533
No 145
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.62 E-value=1.9 Score=43.68 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=19.7
Q ss_pred CCCcEEEccCCCCCCCC----hhhhhCCCCCCEEeccCCCCc
Q 017764 145 HSLTILLLDNNDFVGSL----SPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 145 ~~L~~L~L~~N~l~g~i----P~~l~~l~~L~~L~l~~N~l~ 182 (366)
..++++++..|.|+..- ...+..+..++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34556666666655322 223344455666666666554
No 146
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=36.36 E-value=9.6 Score=36.63 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=18.2
Q ss_pred CCceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 307 SKHIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
+...+|++.||+-++.+++|+++|+.-|
T Consensus 307 ~~~t~IiaSiIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 307 NYYTPIIASIIAILIIVLIMVIIYLILR 334 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788888777666666666666433
No 147
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.78 E-value=31 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=10.3
Q ss_pred EEehhhHHHHHHHHHHHHHhhhc--cccceeeeeee
Q 017764 312 ILGGVIGGAILLVATVGIYLCRC--NKVTIISKVIY 345 (366)
Q Consensus 312 i~~~vv~g~~v~~~~~~~~~~~~--~k~~~~~~~~~ 345 (366)
|++.|+.++++++++++|..++. +|....+|.-+
T Consensus 6 i~~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~ 41 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDR 41 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444444444445555555443 44444444433
No 148
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.00 E-value=47 Score=19.52 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=7.5
Q ss_pred ehhhHHHHHHHHHH
Q 017764 314 GGVIGGAILLVATV 327 (366)
Q Consensus 314 ~~vv~g~~v~~~~~ 327 (366)
+++|+|++++++++
T Consensus 3 ~~vi~G~ilv~lLl 16 (29)
T PRK14748 3 AGVITGVLLVFLLL 16 (29)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666655555443
No 149
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.96 E-value=16 Score=38.90 Aligned_cols=26 Identities=35% Similarity=0.795 Sum_probs=14.4
Q ss_pred ceEEEehhhHHHHHHHHH-HHHHhhhc
Q 017764 309 HIAILGGVIGGAILLVAT-VGIYLCRC 334 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~-~~~~~~~~ 334 (366)
+++.+.+|.||.++++++ +++++|+|
T Consensus 271 HT~fLl~ILG~~~livl~lL~vLl~yC 297 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCVLLCYC 297 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666777765555444 44444545
No 150
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.87 E-value=36 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.158 Sum_probs=14.9
Q ss_pred EEEehhhHHHHHHHHHHHHHhhh
Q 017764 311 AILGGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~~~~~~~~ 333 (366)
|..+||++|+++.++-.+.=++|
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YF 55 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYF 55 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhh
Confidence 66778888877666665544444
No 151
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=30.69 E-value=89 Score=22.94 Aligned_cols=29 Identities=21% Similarity=-0.018 Sum_probs=13.4
Q ss_pred EEehhhHHHHHHH--HHHHHHhhhcccccee
Q 017764 312 ILGGVIGGAILLV--ATVGIYLCRCNKVTII 340 (366)
Q Consensus 312 i~~~vv~g~~v~~--~~~~~~~~~~~k~~~~ 340 (366)
++++||-.++++. ++++.++.|++|+.-.
T Consensus 31 avaVviPl~L~LCiLvl~yai~~fkrkGtPr 61 (74)
T PF11857_consen 31 AVAVVIPLVLLLCILVLIYAIFQFKRKGTPR 61 (74)
T ss_pred EEEEeHHHHHHHHHHHHHHHhheeeecCCCc
Confidence 3444444433333 3344444566766543
No 152
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=30.15 E-value=34 Score=27.84 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=2.0
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 017764 307 SKHIAILGGVIGGAILLVAT 326 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~ 326 (366)
....|++.+.+.++++++.+
T Consensus 75 ~~l~~pi~~sal~v~lVl~l 94 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLAL 94 (129)
T ss_dssp SSSS----------------
T ss_pred cceehhhhhhHHHHHHHHHH
Confidence 44556666666665555444
No 153
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.96 E-value=55 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=10.9
Q ss_pred EEehhhHHHHHHHHH-HHHHhhhccc
Q 017764 312 ILGGVIGGAILLVAT-VGIYLCRCNK 336 (366)
Q Consensus 312 i~~~vv~g~~v~~~~-~~~~~~~~~k 336 (366)
|+.+..+.+++.+.+ +.+++|.|+.
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333334443333333 4455555543
No 154
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.42 E-value=8.1 Score=34.36 Aligned_cols=82 Identities=21% Similarity=0.114 Sum_probs=51.1
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCC-CccccC-CCCCCCeeeccCCc-CCCCCCcccCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFG-ELEELEVLDFGHNN-FSGPLPNDLGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-~P~~l~-~l~~L~~L~Ls~N~-l~g~lP~~l~~l~~L~~L 150 (366)
.|+.+|-++..|...=-..+.+++.|+.|.+.++.--+. --..++ -.++|+.|+|+.|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 578888888877654344567777777777776542211 001111 34689999999764 442222346677888888
Q ss_pred EccCC
Q 017764 151 LLDNN 155 (366)
Q Consensus 151 ~L~~N 155 (366)
+|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 155
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=29.33 E-value=3.2e+02 Score=27.77 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q 017764 34 ALLRLRERV 42 (366)
Q Consensus 34 aL~~~k~~~ 42 (366)
|..+|+.+.
T Consensus 43 AVVqLY~a~ 51 (569)
T KOG3671|consen 43 AVVQLYKAY 51 (569)
T ss_pred HHHHHHhhc
Confidence 444555544
No 156
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=29.24 E-value=79 Score=27.26 Aligned_cols=16 Identities=6% Similarity=0.461 Sum_probs=8.4
Q ss_pred ceEEEehhhHHHHHHH
Q 017764 309 HIAILGGVIGGAILLV 324 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~ 324 (366)
...+|++||.+++|++
T Consensus 113 ~~g~IaGIvsav~val 128 (169)
T PF12301_consen 113 EAGTIAGIVSAVVVAL 128 (169)
T ss_pred ccchhhhHHHHHHHHH
Confidence 3456667665544333
No 157
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=29.19 E-value=1e+02 Score=20.36 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=9.8
Q ss_pred EehhhHHHHHHHHHHHHH
Q 017764 313 LGGVIGGAILLVATVGIY 330 (366)
Q Consensus 313 ~~~vv~g~~v~~~~~~~~ 330 (366)
++.||.|++++++++.+-
T Consensus 5 V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGIC 22 (49)
T ss_pred EeHHHHHHHHHHHHHHHH
Confidence 344555656655555553
No 158
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.73 E-value=91 Score=27.16 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhhh
Q 017764 321 ILLVATVGIYLCR 333 (366)
Q Consensus 321 ~v~~~~~~~~~~~ 333 (366)
+++++++++++++
T Consensus 168 v~~~~~~~~~~~~ 180 (189)
T PF14610_consen 168 VVVLALIMYGFFF 180 (189)
T ss_pred HHHHHHHHHhhhe
Confidence 3333333333333
No 159
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.12 E-value=1.1e+02 Score=23.85 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=4.1
Q ss_pred eEEEehhhHH
Q 017764 310 IAILGGVIGG 319 (366)
Q Consensus 310 ~~i~~~vv~g 319 (366)
..++.++++.
T Consensus 62 ~iili~lls~ 71 (101)
T PF06024_consen 62 NIILISLLSF 71 (101)
T ss_pred cchHHHHHHH
Confidence 3444444443
No 160
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=26.39 E-value=1e+02 Score=20.86 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhccC
Q 017764 30 DEGLALLRLRERVVR 44 (366)
Q Consensus 30 ~~~~aL~~~k~~~~~ 44 (366)
+-..++.+||+....
T Consensus 30 ~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 30 DLAKGLKAFKDGMKD 44 (51)
T ss_pred HHHHHHHHHHHHhcc
Confidence 445688889988754
No 161
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.35 E-value=53 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q 017764 316 VIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 316 vv~g~~v~~~~~~~~~~~~ 334 (366)
++++++.++++++.+++|+
T Consensus 6 iv~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666655
No 162
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=25.94 E-value=3.6e+02 Score=24.14 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=2.8
Q ss_pred cccceee
Q 017764 335 NKVTIIS 341 (366)
Q Consensus 335 ~k~~~~~ 341 (366)
+|+....
T Consensus 156 NKVS~LK 162 (227)
T PF05399_consen 156 NKVSSLK 162 (227)
T ss_pred HHHHHHH
Confidence 4444333
No 163
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.91 E-value=44 Score=40.72 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.4
Q ss_pred EccCCCCCCCCccccCCCCCCCeeeccCCcCC
Q 017764 103 ILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134 (366)
Q Consensus 103 ~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~ 134 (366)
||++|+|+-.-+..|..|.+|+.|+|++|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899998655567888889999999999876
No 164
>PHA03265 envelope glycoprotein D; Provisional
Probab=25.89 E-value=87 Score=30.14 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=5.5
Q ss_pred eEEEehhhHHHHH
Q 017764 310 IAILGGVIGGAIL 322 (366)
Q Consensus 310 ~~i~~~vv~g~~v 322 (366)
..|++-|++|+++
T Consensus 356 ~~i~glv~vg~il 368 (402)
T PHA03265 356 LGIAGLVLVGVIL 368 (402)
T ss_pred cchhhhhhhhHHH
Confidence 3344444444433
No 165
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=25.89 E-value=5.3e+02 Score=26.29 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 017764 30 DEGLALLRL 38 (366)
Q Consensus 30 ~~~~aL~~~ 38 (366)
+|.+.|.++
T Consensus 24 ~ene~lf~~ 32 (569)
T KOG3671|consen 24 EENETLFKL 32 (569)
T ss_pred hHHHHHHHH
Confidence 445555443
No 166
>PHA03283 envelope glycoprotein E; Provisional
Probab=25.36 E-value=73 Score=32.31 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 017764 50 LTSWRSC 56 (366)
Q Consensus 50 l~~W~~~ 56 (366)
...|...
T Consensus 53 te~Wtfl 59 (542)
T PHA03283 53 TKAWTFL 59 (542)
T ss_pred EeeEEEe
Confidence 4567643
No 167
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=25.02 E-value=3.6e+02 Score=23.64 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=16.1
Q ss_pred CCCCCceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 304 GSSSKHIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 304 ~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
.++....-.|+|||....++.++ +++.+||
T Consensus 155 ~s~FD~~SFiGGIVL~LGv~aI~-ff~~KF~ 184 (186)
T PF05283_consen 155 KSTFDAASFIGGIVLTLGVLAII-FFLYKFC 184 (186)
T ss_pred CCCCchhhhhhHHHHHHHHHHHH-HHHhhhc
Confidence 34444555677777764444444 4443554
No 168
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=98 Score=27.53 Aligned_cols=9 Identities=56% Similarity=1.073 Sum_probs=3.8
Q ss_pred ehhhHHHHH
Q 017764 314 GGVIGGAIL 322 (366)
Q Consensus 314 ~~vv~g~~v 322 (366)
+||.||.++
T Consensus 147 AGVAGGMlL 155 (233)
T COG3416 147 AGVAGGMLL 155 (233)
T ss_pred hhhhhhHHH
Confidence 344444333
No 169
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.73 E-value=72 Score=35.63 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=14.1
Q ss_pred CCceEEEehhhHHHHHHHHHHHHHhhh
Q 017764 307 SKHIAILGGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~~~~~~ 333 (366)
..++.|+++|++|+++++++ ++++|+
T Consensus 976 vp~wiIi~svl~GLLlL~ll-v~~LwK 1001 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALL-VLLLWK 1001 (1030)
T ss_pred cceeeehHHHHHHHHHHHHH-HHHHHh
Confidence 44556666677775555544 444443
No 170
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.33 E-value=1.4e+02 Score=19.95 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.0
Q ss_pred ccCchHHHHHHHHHHHhcc
Q 017764 25 CWSLNDEGLALLRLRERVV 43 (366)
Q Consensus 25 ~~~~~~~~~aL~~~k~~~~ 43 (366)
|.+..+|++||++-++.+.
T Consensus 26 crafrqdrdallear~kl~ 44 (54)
T PF13260_consen 26 CRAFRQDRDALLEARNKLF 44 (54)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4456789999999988763
No 171
>PHA03292 envelope glycoprotein I; Provisional
Probab=23.52 E-value=2.5e+02 Score=27.41 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=7.2
Q ss_pred cccccee-eeeee
Q 017764 334 CNKVTII-SKVIY 345 (366)
Q Consensus 334 ~~k~~~~-~~~~~ 345 (366)
|++.-.+ ++-||
T Consensus 345 rkh~l~casrriy 357 (413)
T PHA03292 345 RKHLLSCASRRIY 357 (413)
T ss_pred HHhhhhcccceee
Confidence 4444444 77888
No 172
>PHA03282 envelope glycoprotein E; Provisional
Probab=23.39 E-value=42 Score=33.52 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=3.7
Q ss_pred EehhhHHHH
Q 017764 313 LGGVIGGAI 321 (366)
Q Consensus 313 ~~~vv~g~~ 321 (366)
++++.|+++
T Consensus 410 l~~vlGaal 418 (540)
T PHA03282 410 LVGVLGAAL 418 (540)
T ss_pred hHHHHHHHH
Confidence 344444433
No 173
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.98 E-value=1.2e+02 Score=26.93 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHH
Q 017764 315 GVIGGAILLVAT 326 (366)
Q Consensus 315 ~vv~g~~v~~~~ 326 (366)
...+||+..+++
T Consensus 144 qTAAGVAGGMlL 155 (233)
T COG3416 144 QTAAGVAGGMLL 155 (233)
T ss_pred HHHhhhhhhHHH
Confidence 344444444444
No 174
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=22.72 E-value=1.1e+02 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=17.0
Q ss_pred CCCCCceEEEehhhHHHHHHHHHHHHHhhhccc
Q 017764 304 GSSSKHIAILGGVIGGAILLVATVGIYLCRCNK 336 (366)
Q Consensus 304 ~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~~k 336 (366)
++++.+.|++-+||+..+.+|+..+-++.+-+|
T Consensus 57 s~ss~T~WvLY~VI~VSaaVIagAVPlLLRARR 89 (207)
T PF10812_consen 57 SGSSGTPWVLYAVIGVSAAVIAGAVPLLLRARR 89 (207)
T ss_pred CCCCCCCEeehHHHHHHHHHHHHHHHHHHHHhh
Confidence 344446666666666544444444444444444
No 175
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=22.64 E-value=54 Score=22.66 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=9.1
Q ss_pred EehhhHHHHHHHHHHHHHhhh
Q 017764 313 LGGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 313 ~~~vv~g~~v~~~~~~~~~~~ 333 (366)
..+|+-.++++++++++|+|.
T Consensus 31 ~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 31 FTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred eeEehhHHHHHHHHHhheeEE
Confidence 334444444444444444443
No 176
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.61 E-value=27 Score=27.84 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred ccceeeeeeeccCCc
Q 017764 336 KVTIISKVIYGANRS 350 (366)
Q Consensus 336 k~~~~~~~~~~~~~~ 350 (366)
+..++.|.++.+.-+
T Consensus 53 Yk~L~~k~~~~gt~~ 67 (118)
T PF14991_consen 53 YKTLRDKSLHAGTQS 67 (118)
T ss_dssp ---------------
T ss_pred hhhhhhccccccCch
Confidence 345556677755433
No 177
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.41 E-value=56 Score=27.21 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=6.1
Q ss_pred HHHHhhhcccccee
Q 017764 327 VGIYLCRCNKVTII 340 (366)
Q Consensus 327 ~~~~~~~~~k~~~~ 340 (366)
+.+++|-++|...+
T Consensus 47 vli~lcssRKkKaa 60 (189)
T PF05568_consen 47 VLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHhhhhHHHH
Confidence 44444544444333
No 178
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=22.18 E-value=1.1e+02 Score=18.23 Aligned_cols=6 Identities=33% Similarity=1.331 Sum_probs=2.7
Q ss_pred HHhhhc
Q 017764 329 IYLCRC 334 (366)
Q Consensus 329 ~~~~~~ 334 (366)
+..|.|
T Consensus 27 ~licgc 32 (33)
T PF09049_consen 27 ALICGC 32 (33)
T ss_dssp HHHHHH
T ss_pred hhheec
Confidence 344444
No 179
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=21.82 E-value=85 Score=25.59 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.0
Q ss_pred chhhhccc
Q 017764 355 QPVAKKRR 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
.++-.|||
T Consensus 60 ~slG~REr 67 (124)
T PRK11486 60 ASLGARER 67 (124)
T ss_pred eccCCccE
Confidence 33333333
No 180
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.34 E-value=1.7e+02 Score=21.57 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhcc
Q 017764 321 ILLVATVGIYLCRCN 335 (366)
Q Consensus 321 ~v~~~~~~~~~~~~~ 335 (366)
+++++++.++-|+|.
T Consensus 37 L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 37 LCLFLGLLIVRCFRI 51 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445545543
No 181
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.17 E-value=1.3e+02 Score=28.12 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=6.2
Q ss_pred CCCEEEEEcc
Q 017764 72 DGKVVNLNLK 81 (366)
Q Consensus 72 ~~~v~~L~L~ 81 (366)
.|.|..|.+.
T Consensus 36 ~G~V~~l~~~ 45 (281)
T PF12768_consen 36 SGTVTDLQWA 45 (281)
T ss_pred eEEEEEEEEe
Confidence 3567777654
No 182
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.50 E-value=1.6e+02 Score=26.55 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEehhhHHHHHHHHHHHHHhhhcc
Q 017764 261 NDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCN 335 (366)
Q Consensus 261 ~~~~~p~~~s~p~~~~~~~~~~~~~p~~p~p~p~~~~~~~~~~~~~~~~~~i~~~vv~g~~v~~~~~~~~~~~~~ 335 (366)
++...|..... ...+.+.+............-..+..+...+..+....++++.||..+.+++++-+..+||..
T Consensus 144 q~~asps~T~t-~s~~~Ti~~~~Sq~qg~~~~knsSt~stspS~S~vilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 144 QPDASPSKTST-SSSSVTIPETTSQSQGTESGKNSSTSSTSPSYSSVILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred CCCCCCccccc-cccccccCCccccccccccccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 183
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.36 E-value=51 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHHHh
Q 017764 315 GVIGGAILLVATVGIYL 331 (366)
Q Consensus 315 ~vv~g~~v~~~~~~~~~ 331 (366)
|.|.+++++++-+++++
T Consensus 18 GLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 18 GLIFAGVLFILGILIIL 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33333333333334443
No 184
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=20.20 E-value=7.8 Score=39.24 Aligned_cols=108 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred EEEEEccCCCCCCcCc----ccccCCCCcCEEEccCCCCCCCCc----cccCCC-CCCCeeeccCCcCCCC----CCccc
Q 017764 75 VVNLNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIP----EGFGEL-EELEVLDFGHNNFSGP----LPNDL 141 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~~P----~~l~~l-~~L~~L~Ls~N~l~g~----lP~~l 141 (366)
+..|.|.+|.+..... ..+..+.+|+.|++++|.+.+.-- ..+... ..|++|++..+.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6678888998875432 245567889999999999874311 122222 4577788888888753 33456
Q ss_pred CCCCCCcEEEccCCCCC--C--CChhhhh----CCCCCCEEeccCCCCc
Q 017764 142 GINHSLTILLLDNNDFV--G--SLSPEIY----KLQVLSESQVDEGQLS 182 (366)
Q Consensus 142 ~~l~~L~~L~L~~N~l~--g--~iP~~l~----~l~~L~~L~l~~N~l~ 182 (366)
.....|+.+|++.|.+. | .++..+. ...++++|.+.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 66788999999999873 2 1223333 4678999999999887
Done!