Query 017764
Match_columns 366
No_of_seqs 442 out of 3410
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.6E-26 1.9E-30 214.6 12.8 160 26-190 2-170 (313)
2 3rgz_A Protein brassinosteroid 99.9 1.9E-23 6.5E-28 220.1 11.0 161 21-186 3-195 (768)
3 4eco_A Uncharacterized protein 99.9 1.9E-23 6.6E-28 215.6 9.7 158 28-189 28-295 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 2.9E-22 9.8E-27 212.7 9.2 157 27-189 266-537 (876)
5 4fcg_A Uncharacterized protein 99.8 3.2E-21 1.1E-25 183.3 5.7 160 25-188 22-201 (328)
6 1w8a_A SLIT protein; signaling 99.8 6.2E-19 2.1E-23 154.6 10.6 158 63-229 8-178 (192)
7 2v9t_B SLIT homolog 2 protein 99.8 8.5E-18 2.9E-22 150.5 14.3 167 63-229 11-204 (220)
8 2wfh_A SLIT homolog 2 protein 99.8 4.3E-18 1.5E-22 149.5 11.7 157 63-229 10-178 (193)
9 3e6j_A Variable lymphocyte rec 99.8 9.9E-18 3.4E-22 151.0 14.1 128 58-186 14-152 (229)
10 2o6r_A Variable lymphocyte rec 99.7 2.4E-17 8E-22 142.2 12.1 125 62-186 6-141 (177)
11 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 8E-22 147.7 10.0 167 63-229 11-205 (220)
12 2o6s_A Variable lymphocyte rec 99.7 9.4E-17 3.2E-21 141.9 13.7 125 62-186 6-141 (208)
13 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4E-21 143.1 11.9 115 72-186 56-170 (220)
14 3rgz_A Protein brassinosteroid 99.7 5.2E-17 1.8E-21 171.0 9.5 94 95-188 630-723 (768)
15 3m19_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 142.2 12.4 113 74-186 36-148 (251)
16 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 140.0 13.6 112 74-185 38-149 (270)
17 1ogq_A PGIP-2, polygalacturona 99.6 1.2E-16 4E-21 150.6 5.9 119 73-191 76-196 (313)
18 2v9t_B SLIT homolog 2 protein 99.6 1.1E-15 3.9E-20 136.6 11.5 118 73-196 56-173 (220)
19 4g8a_A TOLL-like receptor 4; l 99.6 6.6E-16 2.2E-20 157.4 10.5 151 73-229 469-622 (635)
20 4fcg_A Uncharacterized protein 99.6 1.6E-15 5.5E-20 143.8 11.3 113 73-187 150-271 (328)
21 2o6s_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 130.9 13.1 115 73-187 52-166 (208)
22 3g39_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 128.0 12.0 105 76-183 12-116 (170)
23 3m19_A Variable lymphocyte rec 99.6 6.5E-15 2.2E-19 134.0 13.3 115 73-187 59-173 (251)
24 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 126.9 8.2 112 73-186 17-130 (149)
25 3rfs_A Internalin B, repeat mo 99.6 7.7E-15 2.6E-19 135.2 13.2 115 73-187 85-199 (272)
26 4b8c_D Glucose-repressible alc 99.6 5.5E-16 1.9E-20 162.2 5.8 112 73-188 224-335 (727)
27 2z81_A CD282 antigen, TOLL-lik 99.6 1.6E-15 5.6E-20 152.7 9.0 125 62-187 3-141 (549)
28 4g8a_A TOLL-like receptor 4; l 99.6 4.5E-15 1.5E-19 151.2 12.3 116 73-188 52-168 (635)
29 3e6j_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 131.6 11.9 110 73-183 64-173 (229)
30 2r9u_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 125.4 12.0 104 76-182 15-118 (174)
31 2z66_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 139.5 9.1 115 73-187 126-241 (306)
32 2ell_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 126.1 9.3 112 73-186 24-137 (168)
33 1w8a_A SLIT protein; signaling 99.6 9.2E-15 3.1E-19 127.9 10.7 111 76-189 11-122 (192)
34 3v47_A TOLL-like receptor 5B a 99.6 6.6E-15 2.3E-19 144.8 10.9 128 61-188 6-148 (455)
35 3rfs_A Internalin B, repeat mo 99.6 2.1E-14 7.3E-19 132.2 13.3 113 73-187 63-175 (272)
36 1ozn_A Reticulon 4 receptor; N 99.6 6.8E-15 2.3E-19 136.1 9.7 113 73-185 105-217 (285)
37 2z80_A TOLL-like receptor 2, v 99.6 7E-15 2.4E-19 140.4 9.1 123 59-184 26-165 (353)
38 3vq2_A TLR4, TOLL-like recepto 99.5 1.8E-14 6.2E-19 146.9 12.6 114 74-187 57-171 (606)
39 2xot_A Amphoterin-induced prot 99.5 1.2E-14 4E-19 139.6 10.2 121 63-183 18-150 (361)
40 2ifg_A High affinity nerve gro 99.5 2E-14 6.8E-19 136.7 11.2 116 63-197 8-125 (347)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.3E-14 4.4E-19 147.1 10.0 108 73-183 52-160 (562)
42 3v47_A TOLL-like receptor 5B a 99.5 2.1E-14 7.1E-19 141.2 10.9 111 74-184 276-386 (455)
43 1dce_A Protein (RAB geranylger 99.5 2.2E-14 7.6E-19 145.9 11.3 109 74-187 442-551 (567)
44 3zyj_A Leucine-rich repeat-con 99.5 1.5E-14 5.2E-19 142.3 9.8 154 74-229 161-333 (440)
45 1ozn_A Reticulon 4 receptor; N 99.5 5.4E-14 1.9E-18 130.0 12.5 114 73-186 32-146 (285)
46 2z62_A TOLL-like receptor 4, v 99.5 4.7E-14 1.6E-18 129.9 12.0 110 74-183 29-138 (276)
47 3zyi_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 141.7 9.2 154 74-229 172-344 (452)
48 3vq2_A TLR4, TOLL-like recepto 99.5 1.9E-14 6.6E-19 146.7 9.1 114 73-187 424-538 (606)
49 4eco_A Uncharacterized protein 99.5 8.3E-15 2.8E-19 151.0 6.1 123 63-186 193-347 (636)
50 2wfh_A SLIT homolog 2 protein 99.5 6.7E-14 2.3E-18 122.6 10.8 107 76-186 13-119 (193)
51 3zyi_A Leucine-rich repeat-con 99.5 5E-14 1.7E-18 139.0 11.2 117 65-181 56-183 (452)
52 3zyj_A Leucine-rich repeat-con 99.5 8.6E-14 2.9E-18 136.9 12.7 122 65-186 45-177 (440)
53 1p9a_G Platelet glycoprotein I 99.5 1.2E-13 4.2E-18 128.6 13.1 113 73-187 77-189 (290)
54 2id5_A Lingo-1, leucine rich r 99.5 6.3E-14 2.2E-18 138.9 11.5 122 65-186 13-145 (477)
55 2z66_A Variable lymphocyte rec 99.5 4.8E-14 1.6E-18 131.7 10.1 110 73-182 150-261 (306)
56 3oja_B Anopheles plasmodium-re 99.5 6.6E-14 2.3E-18 143.1 11.7 109 75-183 77-185 (597)
57 2z62_A TOLL-like receptor 4, v 99.5 9.1E-14 3.1E-18 127.9 11.4 115 73-187 52-167 (276)
58 3j0a_A TOLL-like receptor 5; m 99.5 3.8E-14 1.3E-18 150.6 9.3 113 74-188 427-545 (844)
59 2o6q_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 125.0 13.4 110 74-183 86-195 (270)
60 3t6q_A CD180 antigen; protein- 99.5 8.5E-14 2.9E-18 141.9 11.1 117 73-189 33-150 (606)
61 3t6q_A CD180 antigen; protein- 99.5 4.5E-14 1.6E-18 143.9 8.9 156 73-229 425-602 (606)
62 1p9a_G Platelet glycoprotein I 99.5 1.7E-13 5.7E-18 127.7 12.0 116 73-195 100-215 (290)
63 3j0a_A TOLL-like receptor 5; m 99.5 7E-14 2.4E-18 148.6 10.5 115 74-188 49-167 (844)
64 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.7E-18 132.8 10.8 110 73-183 64-177 (361)
65 4ezg_A Putative uncharacterize 99.5 8.4E-14 2.9E-18 122.0 8.3 108 73-183 66-173 (197)
66 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4.2E-18 117.6 9.0 107 73-182 49-160 (168)
67 1ziw_A TOLL-like receptor 3; i 99.5 1.9E-13 6.6E-18 141.3 12.3 112 74-185 26-137 (680)
68 2o6r_A Variable lymphocyte rec 99.5 5.7E-13 2E-17 114.4 12.8 109 75-186 9-117 (177)
69 3o6n_A APL1; leucine-rich repe 99.5 2.3E-13 7.8E-18 131.5 11.0 111 74-186 46-158 (390)
70 1wwl_A Monocyte differentiatio 99.4 6E-14 2E-18 131.8 6.6 108 74-182 96-214 (312)
71 2ft3_A Biglycan; proteoglycan, 99.4 3.4E-13 1.1E-17 127.5 11.7 122 63-187 33-167 (332)
72 1xku_A Decorin; proteoglycan, 99.4 4.6E-13 1.6E-17 126.4 12.6 118 62-182 30-158 (330)
73 2z63_A TOLL-like receptor 4, v 99.4 1.5E-13 5.2E-18 138.7 9.6 115 73-187 396-512 (570)
74 3g39_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 115.5 10.3 100 63-162 9-119 (170)
75 2je0_A Acidic leucine-rich nuc 99.4 7.9E-14 2.7E-18 116.3 5.7 105 72-178 41-149 (149)
76 4ezg_A Putative uncharacterize 99.4 4.1E-13 1.4E-17 117.6 10.4 110 73-186 44-153 (197)
77 2z7x_B TOLL-like receptor 1, v 99.4 1.5E-13 5.2E-18 137.6 8.7 108 73-183 21-129 (520)
78 2id5_A Lingo-1, leucine rich r 99.4 2.3E-13 7.8E-18 134.9 9.8 148 74-229 225-372 (477)
79 3oja_A Leucine-rich immune mol 99.4 2.7E-13 9.1E-18 135.4 9.7 122 62-187 108-231 (487)
80 3oja_B Anopheles plasmodium-re 99.4 5.1E-13 1.8E-17 136.5 11.9 139 47-188 6-166 (597)
81 3o6n_A APL1; leucine-rich repe 99.4 8.6E-13 2.9E-17 127.4 11.9 111 73-184 69-180 (390)
82 2z63_A TOLL-like receptor 4, v 99.4 6.4E-13 2.2E-17 134.1 11.4 115 73-187 52-167 (570)
83 2xwt_C Thyrotropin receptor; s 99.4 3.9E-13 1.3E-17 121.1 8.4 112 73-186 31-148 (239)
84 4ecn_A Leucine-rich repeat pro 99.4 1.1E-13 3.6E-18 147.1 5.3 122 63-186 435-589 (876)
85 1a9n_A U2A', U2A'; complex (nu 99.4 4.9E-13 1.7E-17 114.9 8.4 107 73-186 19-129 (176)
86 2z81_A CD282 antigen, TOLL-lik 99.4 2.7E-13 9.4E-18 136.4 7.5 118 72-189 49-168 (549)
87 1wwl_A Monocyte differentiatio 99.4 2.5E-13 8.5E-18 127.5 6.7 113 73-186 121-245 (312)
88 1ziw_A TOLL-like receptor 3; i 99.4 8.2E-13 2.8E-17 136.5 10.8 112 74-185 50-161 (680)
89 3cvr_A Invasion plasmid antige 99.4 4.3E-13 1.5E-17 136.2 8.2 118 51-187 34-157 (571)
90 2z80_A TOLL-like receptor 2, v 99.4 6.8E-13 2.3E-17 126.5 7.5 117 72-189 75-194 (353)
91 4b8c_D Glucose-repressible alc 99.4 7.1E-14 2.4E-18 146.2 0.6 113 72-187 246-359 (727)
92 1a9n_A U2A', U2A'; complex (nu 99.4 5E-13 1.7E-17 114.9 5.6 106 73-182 42-153 (176)
93 2xwt_C Thyrotropin receptor; s 99.3 1.1E-12 3.9E-17 118.0 7.4 112 73-187 55-173 (239)
94 2z7x_B TOLL-like receptor 1, v 99.3 1.8E-12 6.2E-17 129.7 9.3 84 74-157 325-411 (520)
95 2r9u_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 109.0 10.1 88 73-160 33-120 (174)
96 4glp_A Monocyte differentiatio 99.3 6.7E-13 2.3E-17 124.4 4.9 114 73-187 117-242 (310)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2E-12 7E-17 130.9 8.8 93 94-186 350-445 (562)
98 1xku_A Decorin; proteoglycan, 99.3 5.6E-12 1.9E-16 118.9 11.0 111 73-187 171-281 (330)
99 3o53_A Protein LRIM1, AGAP0063 99.3 3.9E-12 1.3E-16 119.6 9.4 111 73-187 120-231 (317)
100 4glp_A Monocyte differentiatio 99.3 1.6E-12 5.5E-17 121.8 6.5 109 74-182 92-210 (310)
101 2ft3_A Biglycan; proteoglycan, 99.3 3.4E-12 1.2E-16 120.6 8.1 109 74-186 173-281 (332)
102 1h6t_A Internalin B; cell adhe 99.3 1.3E-11 4.4E-16 114.9 11.3 106 73-186 68-173 (291)
103 3oja_A Leucine-rich immune mol 99.3 2.8E-12 9.5E-17 128.0 7.1 63 122-184 121-184 (487)
104 3o53_A Protein LRIM1, AGAP0063 99.3 5.6E-12 1.9E-16 118.5 8.5 106 73-182 144-250 (317)
105 1xeu_A Internalin C; cellular 99.3 2.1E-11 7E-16 111.8 11.5 103 73-184 63-165 (263)
106 1xeu_A Internalin C; cellular 99.3 2.4E-11 8.1E-16 111.4 11.6 103 73-184 41-143 (263)
107 1dce_A Protein (RAB geranylger 99.3 9.6E-12 3.3E-16 126.5 9.9 102 72-176 462-567 (567)
108 1h6t_A Internalin B; cell adhe 99.3 1.9E-11 6.4E-16 113.7 11.1 104 72-183 89-192 (291)
109 4fmz_A Internalin; leucine ric 99.2 2.2E-11 7.4E-16 115.4 10.8 108 73-186 221-328 (347)
110 1h6u_A Internalin H; cell adhe 99.2 3.3E-11 1.1E-15 112.9 11.5 103 73-183 63-165 (308)
111 1h6u_A Internalin H; cell adhe 99.2 2.4E-11 8.2E-16 113.9 10.5 107 72-186 84-190 (308)
112 1m9s_A Internalin B; cell inva 99.2 5.4E-11 1.8E-15 121.8 13.3 106 73-186 65-170 (605)
113 3cvr_A Invasion plasmid antige 99.2 1.7E-11 5.9E-16 124.5 9.0 93 74-182 121-220 (571)
114 4fmz_A Internalin; leucine ric 99.2 1.7E-11 5.9E-16 116.0 8.3 105 72-182 242-346 (347)
115 1m9s_A Internalin B; cell inva 99.2 5.1E-11 1.8E-15 121.9 11.1 104 72-183 86-189 (605)
116 1ds9_A Outer arm dynein; leuci 99.2 1.1E-13 3.7E-18 121.4 -7.9 110 72-187 47-158 (198)
117 1ds9_A Outer arm dynein; leuci 99.2 1.4E-13 4.8E-18 120.6 -7.4 105 74-183 19-129 (198)
118 3bz5_A Internalin-J, INLJ; leu 99.2 8.6E-11 2.9E-15 116.3 11.7 101 73-185 64-164 (457)
119 1o6v_A Internalin A; bacterial 99.2 6E-11 2E-15 117.4 10.2 104 73-184 243-346 (466)
120 1o6v_A Internalin A; bacterial 99.1 7E-11 2.4E-15 116.8 9.3 106 73-186 265-370 (466)
121 4ay9_X Follicle-stimulating ho 99.1 6.9E-11 2.4E-15 112.6 7.1 116 63-178 9-137 (350)
122 3bz5_A Internalin-J, INLJ; leu 99.1 3.8E-10 1.3E-14 111.7 12.4 84 93-185 166-249 (457)
123 2ca6_A RAN GTPase-activating p 99.1 9.6E-12 3.3E-16 119.9 0.8 111 73-183 159-288 (386)
124 2ast_B S-phase kinase-associat 99.1 1.5E-11 5E-16 115.9 2.0 110 73-183 70-183 (336)
125 2ast_B S-phase kinase-associat 99.1 1E-11 3.5E-16 117.0 0.7 118 62-183 36-157 (336)
126 1jl5_A Outer protein YOPM; leu 99.1 3.3E-10 1.1E-14 112.0 11.6 102 73-183 131-251 (454)
127 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.7E-15 110.1 8.4 87 73-160 31-118 (347)
128 1jl5_A Outer protein YOPM; leu 99.1 1.3E-10 4.5E-15 114.9 8.5 60 121-188 317-378 (454)
129 3g06_A SSPH2 (leucine-rich rep 99.1 7.8E-11 2.7E-15 120.9 6.3 94 51-158 13-114 (622)
130 3g06_A SSPH2 (leucine-rich rep 99.1 3E-10 1E-14 116.5 10.5 81 97-186 221-301 (622)
131 2ca6_A RAN GTPase-activating p 99.0 4.6E-11 1.6E-15 115.2 1.6 113 73-185 187-319 (386)
132 3goz_A Leucine-rich repeat-con 99.0 6.7E-11 2.3E-15 113.2 2.5 113 74-186 52-184 (362)
133 3goz_A Leucine-rich repeat-con 99.0 1.2E-10 4.2E-15 111.4 3.4 112 73-184 22-153 (362)
134 4ay9_X Follicle-stimulating ho 99.0 7.7E-10 2.6E-14 105.3 7.8 107 77-186 13-121 (350)
135 1z7x_W Ribonuclease inhibitor; 98.8 1.9E-10 6.5E-15 112.9 -2.8 110 73-182 256-383 (461)
136 3rw6_A Nuclear RNA export fact 98.8 2.5E-10 8.6E-15 104.8 -3.4 67 118-186 167-237 (267)
137 1z7x_W Ribonuclease inhibitor; 98.7 6.5E-10 2.2E-14 109.1 -2.6 112 73-184 227-356 (461)
138 3un9_A NLR family member X1; l 98.7 3E-09 1E-13 102.5 0.8 86 97-182 155-252 (372)
139 3rw6_A Nuclear RNA export fact 98.6 5.9E-09 2E-13 95.6 1.4 80 94-175 167-257 (267)
140 3un9_A NLR family member X1; l 98.5 8E-09 2.7E-13 99.4 -0.8 111 73-183 101-225 (372)
141 1io0_A Tropomodulin; LRR prote 98.5 1.9E-08 6.4E-13 87.1 0.5 111 72-182 35-164 (185)
142 3ogk_B Coronatine-insensitive 98.4 2.5E-08 8.5E-13 100.9 -0.0 63 120-182 462-526 (592)
143 3sb4_A Hypothetical leucine ri 98.3 9.9E-07 3.4E-11 82.9 7.9 101 73-175 226-327 (329)
144 3ogk_B Coronatine-insensitive 98.2 8.3E-07 2.9E-11 89.6 4.5 60 74-133 165-232 (592)
145 3rfe_A Platelet glycoprotein I 98.1 5.6E-06 1.9E-10 67.3 7.9 96 125-229 12-109 (130)
146 2p1m_B Transport inhibitor res 98.0 2.3E-07 8E-12 93.7 -3.1 110 73-183 372-495 (594)
147 2p1m_B Transport inhibitor res 98.0 1.8E-06 6.1E-11 87.1 1.7 107 73-179 105-221 (594)
148 1io0_A Tropomodulin; LRR prote 97.9 2.3E-06 7.8E-11 73.8 1.6 95 89-183 28-137 (185)
149 2ra8_A Uncharacterized protein 97.9 1.8E-06 6.3E-11 82.6 0.0 108 73-183 172-293 (362)
150 3sb4_A Hypothetical leucine ri 97.8 2.3E-05 7.9E-10 73.4 6.6 86 96-183 225-311 (329)
151 2ra8_A Uncharacterized protein 97.5 5.5E-05 1.9E-09 72.2 3.9 63 120-182 251-320 (362)
152 3e4g_A ATP synthase subunit S, 97.5 3.6E-05 1.2E-09 65.8 1.9 83 98-180 62-150 (176)
153 3e4g_A ATP synthase subunit S, 97.3 4.8E-05 1.6E-09 65.0 1.2 84 73-156 61-150 (176)
154 4fdw_A Leucine rich hypothetic 97.3 0.00047 1.6E-08 66.6 7.7 89 91-182 265-358 (401)
155 3rfe_A Platelet glycoprotein I 96.8 0.0018 6.2E-08 52.2 6.1 55 77-133 12-67 (130)
156 4fdw_A Leucine rich hypothetic 96.8 0.0019 6.6E-08 62.3 7.1 106 73-181 271-382 (401)
157 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00033 1.1E-08 60.9 1.0 110 72-181 40-169 (197)
158 4gt6_A Cell surface protein; l 95.7 0.045 1.5E-06 52.1 9.7 85 93-180 284-368 (394)
159 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0038 1.3E-07 54.1 1.9 88 92-179 36-136 (197)
160 2ks1_B Epidermal growth factor 95.6 0.0043 1.5E-07 39.8 1.6 22 307-328 8-29 (44)
161 2l2t_A Receptor tyrosine-prote 95.5 0.0031 1.1E-07 40.3 0.7 29 306-334 6-35 (44)
162 4h09_A Hypothetical leucine ri 95.0 0.048 1.6E-06 51.4 7.5 102 74-179 218-320 (379)
163 4gt6_A Cell surface protein; l 94.7 0.041 1.4E-06 52.4 6.2 100 75-181 290-390 (394)
164 4fs7_A Uncharacterized protein 94.3 0.047 1.6E-06 51.9 5.6 85 92-179 292-376 (394)
165 4fs7_A Uncharacterized protein 94.0 0.075 2.5E-06 50.5 6.3 100 74-179 254-353 (394)
166 4h09_A Hypothetical leucine ri 92.9 0.32 1.1E-05 45.6 8.8 88 92-182 212-299 (379)
167 2k1k_A Ephrin type-A receptor 90.0 0.11 3.6E-06 32.2 1.2 9 311-319 12-20 (38)
168 2k9y_A Ephrin type-A receptor 89.6 0.083 2.8E-06 33.2 0.5 16 309-324 12-27 (41)
169 2jwa_A Receptor tyrosine-prote 89.5 0.078 2.7E-06 33.8 0.3 27 308-334 10-36 (44)
170 1iij_A ERBB-2 receptor protein 79.9 0.062 2.1E-06 32.4 -3.3 26 309-335 7-33 (35)
171 2l34_A TYRO protein tyrosine k 64.6 3.3 0.00011 24.5 1.7 20 314-333 10-29 (33)
172 2knc_B Integrin beta-3; transm 54.7 3.6 0.00012 29.7 0.8 14 310-323 11-24 (79)
173 2k9j_B Integrin beta-3; transm 41.7 6.4 0.00022 24.8 0.3 12 310-321 10-21 (43)
174 2knc_B Integrin beta-3; transm 41.4 10 0.00034 27.3 1.4 20 312-331 9-28 (79)
175 2l8s_A Integrin alpha-1; trans 37.3 7.7 0.00026 25.7 0.2 18 309-326 9-26 (54)
176 2k1a_A Integrin alpha-IIB; sin 35.4 14 0.00049 23.1 1.2 18 309-326 10-27 (42)
177 2knc_A Integrin alpha-IIB; tra 33.0 13 0.00045 24.6 0.8 18 309-326 12-29 (54)
178 2l6w_A Beta-type platelet-deri 35.2 12 0.0004 22.9 0.0 7 312-318 10-16 (39)
179 1pfi_A Major coat protein of P 28.2 23 0.0008 21.8 1.2 17 314-330 23-39 (46)
180 2k9p_A Pheromone alpha factor 28.2 12 0.00042 26.9 -0.0 29 310-338 21-49 (80)
181 2llm_A Amyloid beta A4 protein 33.3 13 0.00045 23.2 0.0 16 311-326 18-33 (43)
182 2lz0_A Uncharacterized protein 26.8 1.2E+02 0.004 22.3 5.4 39 115-154 14-52 (100)
183 3hd7_A Vesicle-associated memb 26.4 40 0.0014 24.7 2.5 14 321-334 77-90 (91)
184 1cd1_A CD1, MCD1D.1; immunolog 26.1 14 0.00048 33.7 0.0 12 311-322 285-296 (315)
185 2j5l_A Apical membrane antigen 23.2 17 0.00059 35.4 0.0 19 337-355 545-563 (581)
186 2l9u_A Receptor tyrosine-prote 22.2 57 0.0019 19.3 2.1 20 315-334 11-31 (40)
187 2kog_A Vesicle-associated memb 21.5 53 0.0018 25.4 2.5 13 322-334 106-118 (119)
188 2lz0_A Uncharacterized protein 20.1 1.8E+02 0.0062 21.2 5.2 47 84-131 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.6e-26 Score=214.64 Aligned_cols=160 Identities=28% Similarity=0.486 Sum_probs=148.2
Q ss_pred cCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC--cceeeeCC----CCEEEEEccCCCCCC--cCcccccCCC
Q 017764 26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS--WFGVECSD----GKVVNLNLKDLCLEG--TLAPEIQSLT 97 (366)
Q Consensus 26 ~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~--w~Gv~C~~----~~v~~L~L~~n~l~g--~~p~~l~~L~ 97 (366)
.|.++|++||++||+++ .|+. .+.+|. .+.+||. |.||.|+. ++|+.|+|++|.+.| .+|..+.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhc-CCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC
Confidence 47789999999999999 5564 688998 5678998 99999983 799999999999999 8999999999
Q ss_pred CcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEec
Q 017764 98 HIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176 (366)
Q Consensus 98 ~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l 176 (366)
+|++|+|++ |.+.+.+|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 999999995 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCcccc
Q 017764 177 DEGQLSSAAKKEQS 190 (366)
Q Consensus 177 ~~N~l~g~iP~~~~ 190 (366)
++|+++|.+|....
T Consensus 157 ~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 157 DGNRISGAIPDSYG 170 (313)
T ss_dssp CSSCCEEECCGGGG
T ss_pred cCCcccCcCCHHHh
Confidence 99999999987544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.9e-23 Score=220.07 Aligned_cols=161 Identities=23% Similarity=0.316 Sum_probs=128.4
Q ss_pred hhhhccCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeeeCCCCEEEEEccCCCCCCc---Cc-------
Q 017764 21 SLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGT---LA------- 90 (366)
Q Consensus 21 ~~~~~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~~~~v~~L~L~~n~l~g~---~p------- 90 (366)
+.+++++.++|++||++||+++. |+. .+.+|+ .+.|||.|.||+|+.++|+.|+|+++.+.|. ++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~---~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS---SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCC---TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC---CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccC
Confidence 34455567899999999999995 776 899998 5779999999999989999999999999886 44
Q ss_pred ----------------ccccCCCCcCEEEccCCCCCCCCcc--ccCCCCCCCeeeccCCcCCCCCCccc-CCCCCCcEEE
Q 017764 91 ----------------PEIQSLTHIKSIILRNNSFSGIIPE--GFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL 151 (366)
Q Consensus 91 ----------------~~l~~L~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~ 151 (366)
..+.++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 4677788888888888888888887 88888888888888888888888765 6788888888
Q ss_pred ccCCCCCCCChhh---hhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSLSPE---IYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~iP~~---l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|++++..|.. +.++++|++|++++|.++|.+|
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 8888888777766 5666666666666666665554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.9e-23 Score=215.63 Aligned_cols=158 Identities=19% Similarity=0.269 Sum_probs=141.4
Q ss_pred chHHHHHHHHHHHhccCCCCCCC-------CCCCCCCCCCCCCCc---ceeeeC-CCCEEEEEccCCCCCCcCcccccCC
Q 017764 28 LNDEGLALLRLRERVVRDPYGAL-------TSWRSCDTENNPCSW---FGVECS-DGKVVNLNLKDLCLEGTLAPEIQSL 96 (366)
Q Consensus 28 ~~~~~~aL~~~k~~~~~~~~~~l-------~~W~~~~~~~~~C~w---~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L 96 (366)
...|+.||.++++++.++.|... .+|+ .+.++|.| .||.|+ .++|+.|+|+++++.|.+|+++++|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcC
Confidence 35799999999999976666533 3798 67899999 999998 6799999999999999999999999
Q ss_pred CCcCEEEccCCC--------------------------------------------------------------------
Q 017764 97 THIKSIILRNNS-------------------------------------------------------------------- 108 (366)
Q Consensus 97 ~~L~~L~Ls~N~-------------------------------------------------------------------- 108 (366)
++|++|+|++|.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 999999999884
Q ss_pred ----------CCCCCccccCCCCCCCeeeccCCcCCCC-----------------CCcccC--CCCCCcEEEccCCCCCC
Q 017764 109 ----------FSGIIPEGFGELEELEVLDFGHNNFSGP-----------------LPNDLG--INHSLTILLLDNNDFVG 159 (366)
Q Consensus 109 ----------l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-----------------lP~~l~--~l~~L~~L~L~~N~l~g 159 (366)
++| +|..|+++++|++|+|++|+|+|. +|..++ ++++|++|+|++|++.|
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 345 888899999999999999999986 999999 99999999999999999
Q ss_pred CChhhhhCCCCCCEEeccCCC-Ccc-cCCccc
Q 017764 160 SLSPEIYKLQVLSESQVDEGQ-LSS-AAKKEQ 189 (366)
Q Consensus 160 ~iP~~l~~l~~L~~L~l~~N~-l~g-~iP~~~ 189 (366)
.+|..|+++++|++|++++|+ ++| .+|..+
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~ 295 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDW 295 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHH
Confidence 999999999999999999998 998 787543
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.9e-22 Score=212.72 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=137.1
Q ss_pred CchHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCCC--CCc------------ceeeeC-CCCEEEEEccCCCCCCcC
Q 017764 27 SLNDEGLALLRLRERVVRDPYGALTSWRSCD--TENNP--CSW------------FGVECS-DGKVVNLNLKDLCLEGTL 89 (366)
Q Consensus 27 ~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~Gv~C~-~~~v~~L~L~~n~l~g~~ 89 (366)
...+|+.||++||+++. ++ +|+... ...+| |.| .||.|+ .++|+.|+|++|+|.|.+
T Consensus 266 ~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred cchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 45689999999999994 33 676111 01355 999 999998 689999999999999999
Q ss_pred cccccCCCCcCEEEc-cCCCCCCC--------------------------------------------------------
Q 017764 90 APEIQSLTHIKSIIL-RNNSFSGI-------------------------------------------------------- 112 (366)
Q Consensus 90 p~~l~~L~~L~~L~L-s~N~l~g~-------------------------------------------------------- 112 (366)
|++|++|++|++|+| ++|.++|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765444
Q ss_pred --------------------CccccCCCCCCCeeeccCCcCCC-----------------CCCcccC--CCCCCcEEEcc
Q 017764 113 --------------------IPEGFGELEELEVLDFGHNNFSG-----------------PLPNDLG--INHSLTILLLD 153 (366)
Q Consensus 113 --------------------~P~~l~~l~~L~~L~Ls~N~l~g-----------------~lP~~l~--~l~~L~~L~L~ 153 (366)
+|..|++|++|++|+|++|+|+| .+|..++ ++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 78889999999999999999998 3999988 99999999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCC-Ccc-cCCccc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKKEQ 189 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~-l~g-~iP~~~ 189 (366)
+|++.|.+|..|+++++|++|+|++|+ |+| .+|..+
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i 537 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence 999999999999999999999999998 999 788643
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.2e-21 Score=183.28 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=134.5
Q ss_pred ccCchHHHHHHHHHHHhccCCCCCCCCCCCC-CCCCCCCCCcceeeeC----------CCCEEEEEccCCCCCCcCcccc
Q 017764 25 CWSLNDEGLALLRLRERVVRDPYGALTSWRS-CDTENNPCSWFGVECS----------DGKVVNLNLKDLCLEGTLAPEI 93 (366)
Q Consensus 25 ~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~-~~~~~~~C~w~Gv~C~----------~~~v~~L~L~~n~l~g~~p~~l 93 (366)
.++..+|+.+|++||..+..|+.+.+..|.. .....++|.|.|+.|. ..+|+.|+|++|.++ .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3456789999999999987777666778831 1246789999999995 368999999999998 788889
Q ss_pred cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhC------
Q 017764 94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK------ 167 (366)
Q Consensus 94 ~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~------ 167 (366)
.++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 99999999999999998 88988999999999999999998 78988999999999999998888888877654
Q ss_pred ---CCCCCEEeccCCCCcccCCcc
Q 017764 168 ---LQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 168 ---l~~L~~L~l~~N~l~g~iP~~ 188 (366)
+++|++|++++|+++ .+|..
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGG
T ss_pred hccCCCCCEEECcCCCcC-cchHh
Confidence 888888888888887 66653
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=6.2e-19 Score=154.60 Aligned_cols=158 Identities=17% Similarity=0.239 Sum_probs=130.2
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
|.|..+.|.. .+++.|+|++|.+++..+. .+.++++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 7788888861 2789999999999866554 389999999999999999999999999999999999999
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhc
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQR 209 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~ 209 (366)
|+|++..+..|..+++|++|+|++|++++.+|..|..+++|++|+|++|+|++..+ ...+. |. .......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~------l~~~~~~l---~~~~~~~ 158 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH------LAWFAEWL---RKKSLNG 158 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG------GHHHHHHH---HHHCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc------chHHHHHH---HHcCCCC
Confidence 99998888889999999999999999999999999999999999999999985544 22221 11 1111223
Q ss_pred ccccccccccccCcccCCCC
Q 017764 210 RLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 210 ~~~~c~~~~~~~g~~l~~~~ 229 (366)
....|..+..++|..+...+
T Consensus 159 ~~~~C~~P~~l~~~~l~~l~ 178 (192)
T 1w8a_A 159 GAARCGAPSKVRDVQIKDLP 178 (192)
T ss_dssp GGCBBCSSTTTTTSBGGGSC
T ss_pred CCCCCCCChHHcCCChhhCc
Confidence 45678888888888876555
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=8.5e-18 Score=150.53 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=130.3
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N 131 (366)
|.|..|.|.. .+++.|+|++|.|++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 6789999961 36899999999999766667899999999999999999888999999999999999999
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccCc
Q 017764 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDE 204 (366)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~~ 204 (366)
+|+...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+. .....+.|.+.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99954444578899999999999999988888899999999999999999876553222 22333333333333
Q ss_pred hhh---------hcccccccccccccCcccCCCC
Q 017764 205 DTV---------QRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 205 ~~~---------~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
.+. ......|..+..++|+.+...+
T Consensus 171 ~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~ 204 (220)
T 2v9t_B 171 KWLADYLHTNPIETSGARCTSPRRLANKRIGQIK 204 (220)
T ss_dssp HHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSC
T ss_pred HHHHHHHHhCCCCccCCCcCCchHHcCCchhhCC
Confidence 222 1244679999999999886665
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=149.51 Aligned_cols=157 Identities=21% Similarity=0.281 Sum_probs=130.7
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N 131 (366)
|.|..+.|.. .+++.|+|++|.|+ .+|..+.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 6677888861 36899999999998 78889999999999999999999888888999999999999999
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcc
Q 017764 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRR 210 (366)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~ 210 (366)
+|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|+|. +.|....+. |.. .......
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------C~c~l~~l~~~~~---~~~~~~~ 159 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY------CDCNMQWLSDWVK---SEYKEPG 159 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHHHHHHH---HSSCCCS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee------cCCcCHHHHHHHH---hccCCCC
Confidence 999877778999999999999999999655557899999999999999987 666655443 211 1111234
Q ss_pred cccccccccccCcccCCCC
Q 017764 211 LLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 211 ~~~c~~~~~~~g~~l~~~~ 229 (366)
...|..+..++|+.+...+
T Consensus 160 ~~~C~~P~~l~g~~l~~~~ 178 (193)
T 2wfh_A 160 IARCAGPGEMADKLLLTTP 178 (193)
T ss_dssp CCBEEESGGGTTCBTTTSC
T ss_pred CcCcCCchHHCCCCcccCC
Confidence 5689999999999886666
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=9.9e-18 Score=150.96 Aligned_cols=128 Identities=24% Similarity=0.296 Sum_probs=114.8
Q ss_pred CCCCCCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCee
Q 017764 58 TENNPCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL 126 (366)
Q Consensus 58 ~~~~~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 126 (366)
...+.|+|++|.|.. .+++.|+|++|.+++..+..+.++++|++|+|++|.|+...+..|..+++|++|
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 467789999999972 368999999999998888889999999999999999986666678999999999
Q ss_pred eccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 127 ~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+|++|+|++..+..+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 99999999766666889999999999999999 889999999999999999999986554
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=2.4e-17 Score=142.15 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=108.8
Q ss_pred CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
.|.|.++.|.. .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 37899999971 3689999999999976666689999999999999999977667789999999999999
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+|++.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997666668899999999999999996555567889999999999999986554
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=147.66 Aligned_cols=167 Identities=15% Similarity=0.081 Sum_probs=109.5
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
|.|..+.|+. ..++.|+|++|.|++..+. .|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777751 2456778888877765443 367777777777777777766666777777777777777
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccC
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLD 203 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~ 203 (366)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+. .....+.|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777765555677777777777777777776677777777777777777777766554322 1122222322222
Q ss_pred chhh---------hcccccccccccccCcccCCCC
Q 017764 204 EDTV---------QRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 204 ~~~~---------~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
..+. ......|..+..++|..+...+
T Consensus 171 l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~ 205 (220)
T 2v70_A 171 LAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVA 205 (220)
T ss_dssp GHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSC
T ss_pred hHHHHHHHHhcCccccCCccCCChHHCCCChhhCC
Confidence 2111 1223468888888888876655
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.4e-17 Score=141.89 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=108.8
Q ss_pred CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
.|.|.+|.|+. .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 47899999971 3689999999999976666688999999999999999976666788999999999999
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 99996555668899999999999999997766678999999999999999986555
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=143.08 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=106.7
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 45799999999999987777899999999999999999988888899999999999999999988899999999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|++++..|..|..+++|+.|++++|+|++..+
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99999998889999999999999999999985544
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=5.2e-17 Score=170.96 Aligned_cols=94 Identities=28% Similarity=0.479 Sum_probs=89.1
Q ss_pred CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEE
Q 017764 95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174 (366)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L 174 (366)
++++|++|||++|.++|.+|..|+++++|++|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccCCcc
Q 017764 175 QVDEGQLSSAAKKE 188 (366)
Q Consensus 175 ~l~~N~l~g~iP~~ 188 (366)
++++|+|+|.||..
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999999999954
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.8e-16 Score=142.20 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=73.3
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+.+..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 46677777777776656566777777777777777776666666667777777777777665444555666666666666
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+|++++..+..|..+++|++|+|++|++++..+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 666664444445666666666666666664443
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.4e-15 Score=139.96 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=75.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
.++.|+|++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 35667777777765444467777777777777777765444445667777777777777775444456667777777777
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
+|.+++..+..|..+++|++|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 77777655556677777777777777776433
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=1.2e-16 Score=150.59 Aligned_cols=119 Identities=21% Similarity=0.357 Sum_probs=112.2
Q ss_pred CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++ |.+.+.+|..+.++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5789999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCChhhhhCCC-CCCEEeccCCCCcccCCccccc
Q 017764 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKKEQSC 191 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~g~iP~~~~c 191 (366)
|++|.++|.+|..++.+. +|++|++++|+++|.+|..+..
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 999999999999999998 9999999999999999875443
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=1.1e-15 Score=136.60 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=106.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..|.++++|++|+|++|.|+...+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 57999999999999888889999999999999999999655566889999999999999999888889999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccccccccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSI 196 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~ 196 (366)
++|++++..+..|..+++|+.|+|++|+|. +.|....+
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------c~c~l~~l 173 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------CDCHLKWL 173 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHH
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcC------CCCccHHH
Confidence 999999877778999999999999999997 55554433
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=6.6e-16 Score=157.42 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=120.0
Q ss_pred CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..++.|+|++|.+. +.+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+..+++|++|+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 46788889888744 44667788899999999999999988888899999999999999999977777888999999999
Q ss_pred ccCCCCCCCChhhhhCC-CCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCC
Q 017764 152 LDNNDFVGSLSPEIYKL-QVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l-~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
|++|++++..|..+..+ ++|++|+|++|+|+ |+|....+. |.............+.|..+..++|..+....
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 99999998888888887 68999999999887 888776655 32111111112345789999999999886554
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.6e-15 Score=143.84 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCEEEEEccCCCCCCcCcccccC---------CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQS---------LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 143 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~---------L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~ 143 (366)
.+++.|+|++|++.+.+|..+.. +++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 35666666666655555555443 556666666666655 555555555566666666665552 4445555
Q ss_pred CCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 144 l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
+++|++|+|++|++.+.+|..+..+++|++|++++|++.+.+|.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 55555555555555555555555555555555555555555554
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.7e-15 Score=130.89 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=102.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 57999999999999665556789999999999999999776677899999999999999999766666899999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..+..+++|++|++++|.+.+..|.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 99999976666789999999999999999987764
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3.6e-15 Score=127.98 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=93.3
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N 155 (366)
+.|++++|.|+ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788889888 5777664 89999999999999988999999999999999999999665566789999999999999
Q ss_pred CCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 156 DFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
+|++..+..|..+++|++|+|++|+|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9997666679999999999999999983
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=6.5e-15 Score=133.99 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=98.0
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 57899999999999877777889999999999999999777777889999999999999999655556788999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99999866666788899999999999999866653
No 24
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.5e-15 Score=126.92 Aligned_cols=112 Identities=20% Similarity=0.201 Sum_probs=101.2
Q ss_pred CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46889999999998 88998899999999999999999976 7899999999999999999987888888899999999
Q ss_pred ccCCCCCCC-ChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|.+++. .+..+..+++|++|++++|++++..+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999963 34789999999999999999986554
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=7.7e-15 Score=135.18 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 57889999999988766666788899999999999998777777888889999999999888666666788888999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..+..+++|++|++++|++++..+.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 99988876666778888899999999988876664
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=5.5e-16 Score=162.19 Aligned_cols=112 Identities=25% Similarity=0.324 Sum_probs=102.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
..++.|+|++|.+. .+|..+.+|++|++|+|++|.|+ .+|..|++|++|++|+|++|+|+ .+|..|+.|++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 35678999999988 78888889999999999999999 89999999999999999999999 88999999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~ 188 (366)
++|.|+ .+|..|+++++|++|+|++|+|+|.+|..
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 999997 88989999999999999999999877753
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=1.6e-15 Score=152.74 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=108.9
Q ss_pred CCCcceeeeCC-------------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeec
Q 017764 62 PCSWFGVECSD-------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 128 (366)
Q Consensus 62 ~C~w~Gv~C~~-------------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~L 128 (366)
.|.|.|+ |+. .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3888887 761 26899999999999888888999999999999999999888889999999999999
Q ss_pred cCCcCCCCCCcccCCCCCCcEEEccCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 129 s~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..++.+++|++|+|++|.+++ .+|..+.++++|++|++++|++.+.+|.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 9999997666679999999999999999986 4667888999999999999987777764
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=4.5e-15 Score=151.23 Aligned_cols=116 Identities=17% Similarity=0.079 Sum_probs=100.7
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
..++.|+|++|.|++..+..|.++++|++|||++|.|++..+..|.+|++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999766678999999999999999999877788999999999999999999655567899999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc-cCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKE 188 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g-~iP~~ 188 (366)
++|++++..+..|+++++|++|++++|++++ .+|..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence 9999996666678999999999999999875 45543
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=8.7e-15 Score=131.58 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=99.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.|....+..+..+++|++|+|++|.|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 57999999999998554455799999999999999999877777899999999999999999 89999999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|++++..+..|..+++|+.|++++|+|.+
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999997666778999999999999999883
No 30
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.2e-14 Score=125.37 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=93.0
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N 155 (366)
+.+++++|+|+ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999996 7887765 89999999999999988999999999999999999999644445789999999999999
Q ss_pred CCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 156 DFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|++..+..|..+++|++|+|++|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999655556999999999999999987
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=3.4e-15 Score=139.50 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=84.9
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+.+..+..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 467777777777776666667777777777777777765 4667777777777777777777766667777777777777
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
|++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 777777765555677777777777777777776654
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.4e-15 Score=126.05 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=98.4
Q ss_pred CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46899999999998 78888889999999999999999865 7889999999999999999987888887899999999
Q ss_pred ccCCCCCCCC-hhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|.+++.. +..+..+++|++|++++|++++..+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 9999998532 2688999999999999999986544
No 33
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=9.2e-15 Score=127.86 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=100.3
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCcc-ccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
+.|++++|+|+ .+|..+.. +|++|+|++|.+++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68999999996 78876654 899999999999976664 489999999999999999998899999999999999999
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~ 189 (366)
|++++..+..|.++++|++|+|++|++++.+|..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 99998888889999999999999999999887644
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=6.6e-15 Score=144.82 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=104.7
Q ss_pred CCCCcce--eeeCC----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCC-ccccCCCCCCCeee
Q 017764 61 NPCSWFG--VECSD----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLD 127 (366)
Q Consensus 61 ~~C~w~G--v~C~~----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~-P~~l~~l~~L~~L~ 127 (366)
+.|.|.+ |.|+. .+++.|+|++|.+++..+..+.++++|++|+|++|.+.+.+ +..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 3466555 77762 46899999999999877888999999999999999887666 45688899999999
Q ss_pred ccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhh--hhCCCCCCEEeccCCCCcccCCcc
Q 017764 128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 128 Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~--l~~l~~L~~L~l~~N~l~g~iP~~ 188 (366)
|++|++++..|..+.++++|++|+|++|++++.++.. +.++++|++|++++|++++..|..
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 9999998777888888899999999999888766665 788888888888888888877753
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=2.1e-14 Score=132.22 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+.+ + +.+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 578889999988886 3 46888889999999999988777777888899999999999988766666788889999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..+..+++|++|++++|++++..+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 99988866666678888999999999988866554
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=6.8e-15 Score=136.14 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 46777777777777666666777777777777777777655555777777777777777777444445667777777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
++|.+++..|..+..+++|+.|++++|++++..
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 777777666777777777777777777776533
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=7e-15 Score=140.36 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=97.9
Q ss_pred CCCCCCcceeeeC-------------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCe
Q 017764 59 ENNPCSWFGVECS-------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV 125 (366)
Q Consensus 59 ~~~~C~w~Gv~C~-------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 125 (366)
....|.|.|+ |+ ..+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4456788776 54 136889999999998655557889999999999999999877888889999999
Q ss_pred eeccCCcCCCCCCc-ccCCCCCCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCC-Cccc
Q 017764 126 LDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQ-LSSA 184 (366)
Q Consensus 126 L~Ls~N~l~g~lP~-~l~~l~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~-l~g~ 184 (366)
|+|++|++++ ++. .+..+++|++|+|++|+++ .+|. .+.++++|++|++++|+ +.+.
T Consensus 105 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 105 LDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp EECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred EECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccccc
Confidence 9999999985 554 4888899999999999988 4554 67888899999998885 4433
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=1.8e-14 Score=146.89 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=56.9
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..++++++|++|+|+
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 34444444444443334444444444444444444444444444455555555555555543333445555555555555
Q ss_pred CCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 154 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 154 ~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
+|.+++ .+|..++++++|++|++++|++++..+.
T Consensus 137 ~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred CCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 555543 3455555556666666666655554443
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=139.60 Aligned_cols=121 Identities=24% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
|.+..+.|.. ..++.|+|++|.|++..+..+. ++++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5566666651 2456777777777655444454 666777777777776655555666666666666666
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
|+|++..+..|..+.+|++|+|++|++++..+..|..+++|++|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66664444455666666666666666665555556666666666666666553
No 40
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=2e-14 Score=136.75 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=98.0
Q ss_pred CCcceeeeCCCCEEEEEccCC-CCCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc
Q 017764 63 CSWFGVECSDGKVVNLNLKDL-CLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND 140 (366)
Q Consensus 63 C~w~Gv~C~~~~v~~L~L~~n-~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~ 140 (366)
|.|..|.| +++ +|+ .+|. |..+++|++|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..
T Consensus 8 C~~~~v~~----------~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 75 (347)
T 2ifg_A 8 HGSSGLRC----------TRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75 (347)
T ss_dssp SSSSCEEC----------CSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred ccCCEEEc----------CCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence 77776666 455 677 5888 99999999999996 9999888889999999999999999999988888
Q ss_pred cCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764 141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK 197 (366)
Q Consensus 141 l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~ 197 (366)
|.++++|+.|+|++|+|++..+..+..+. |+.|+|.+|+|. +.|....+.
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~------c~c~l~~~~ 125 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH------CSCALRWLQ 125 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC------CCGGGHHHH
T ss_pred hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc------CCCccHHHH
Confidence 99999999999999999965555555555 999999999997 667655444
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=1.3e-14 Score=147.09 Aligned_cols=108 Identities=22% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57899999999999877788999999999999999999888899999999999999999998 68876 7899999999
Q ss_pred cCCCCCC-CChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|++++ .+|..|+++++|++|++++|++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999986 456889999999999999998875
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=2.1e-14 Score=141.24 Aligned_cols=111 Identities=21% Similarity=0.184 Sum_probs=73.6
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+.+.++..+.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 56666666666666666666666666666666666666666666666666666666666665555666666666666666
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
+|++++..|..|..+++|++|++++|++++.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhhccccccccEEECCCCccccC
Confidence 6666666566666666666666666666653
No 43
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=2.2e-14 Score=145.90 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=102.0
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
.++.|+|++|.|++ +|. +.+|++|++|+|++|.|+ .+|..|+.|++|++|+|++|+|++ +| .++.+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999996 676 999999999999999999 899999999999999999999996 78 89999999999999
Q ss_pred CCCCCCCC-hhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 154 NNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 154 ~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
+|+|++.. |..++.+++|+.|+|++|+|++.+|.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999877 99999999999999999999988763
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=142.27 Aligned_cols=154 Identities=20% Similarity=0.188 Sum_probs=88.6
Q ss_pred CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
+++.|+|++|+..+.++. .|.++++|++|+|++|.++ .+| .+..+++|++|+|++|++++..|..|..+++|+.|+|
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 567777777443334443 4666777777777777766 344 3566666777777777666655666666666666666
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc-------ccccccccccCccCchhh-----------hcccccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ-------SCYERSIKWNGVLDEDTV-----------QRRLLQI 214 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~-------~c~~~~~~~~~~~~~~~~-----------~~~~~~c 214 (366)
++|++++..+..|.++++|++|+|++|+|++..+..+ .-.+..+.|.+.+...+. ......|
T Consensus 239 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C 318 (440)
T 3zyj_A 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARC 318 (440)
T ss_dssp TTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBE
T ss_pred CCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCC
Confidence 6666666656666666666666666666664333211 111222223232222221 1224578
Q ss_pred cccccccCcccCCCC
Q 017764 215 NPFRNLKGRILGIAP 229 (366)
Q Consensus 215 ~~~~~~~g~~l~~~~ 229 (366)
..+..++|+.+....
T Consensus 319 ~~P~~l~g~~l~~l~ 333 (440)
T 3zyj_A 319 NTPPNLKGRYIGELD 333 (440)
T ss_dssp EESTTTTTCBCC---
T ss_pred CChhHhcCccHhHhh
Confidence 888888888875444
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=5.4e-14 Score=130.04 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=90.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~-l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 367888888888886655668888888888888888887777788888888888888887 6655567788888888888
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|.+++..+..+.++++|++|++++|++++..+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 88888887777778888888888888888875544
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=4.7e-14 Score=129.86 Aligned_cols=110 Identities=18% Similarity=0.110 Sum_probs=55.5
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35555555555554433345555555555555555554444445555555555555555554444445555555555555
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
+|++++..+..+.++++|++|++++|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccce
Confidence 555543333344455555555555555443
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=2.1e-14 Score=141.68 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=95.4
Q ss_pred CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
+++.|+|++|+..+.++. .+.++++|++|+|++|.+++ +| .+..+++|++|+|++|++++..|..|.++++|+.|+|
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 567777777444344444 46677777777777777764 33 4667777777777777777666666777777777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc-------ccccccccccCccCchhhh-----------cccccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ-------SCYERSIKWNGVLDEDTVQ-----------RRLLQI 214 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~-------~c~~~~~~~~~~~~~~~~~-----------~~~~~c 214 (366)
++|++++..+..|..+++|++|+|++|+|++..+..+ .-....+.|.+.+...+.. .....|
T Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C 329 (452)
T 3zyi_A 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRC 329 (452)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBE
T ss_pred CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEe
Confidence 7777776666667777777777777777764333221 1122222333333322211 123578
Q ss_pred cccccccCcccCCCC
Q 017764 215 NPFRNLKGRILGIAP 229 (366)
Q Consensus 215 ~~~~~~~g~~l~~~~ 229 (366)
..+..++|+.+....
T Consensus 330 ~~P~~l~g~~l~~~~ 344 (452)
T 3zyi_A 330 HAPMHMRGRYLVEVD 344 (452)
T ss_dssp EESTTTTTCBTTSCC
T ss_pred CCchHhccchhhccc
Confidence 889999988875544
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=1.9e-14 Score=146.70 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=87.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+.+..|..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 467788888888877777777778888888888888776 3677777788888888888888777777777778888888
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
|++|++++.+|..+.++++|+.|++++|+++ .+|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 8888887777777777788888888888777 3443
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=8.3e-15 Score=151.03 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=112.4
Q ss_pred CCcceeeeC---CCCEEEEEccCCCCCCc-----------------Cccccc--CCCCcCEEEccCCCCCCCCccccCCC
Q 017764 63 CSWFGVECS---DGKVVNLNLKDLCLEGT-----------------LAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL 120 (366)
Q Consensus 63 C~w~Gv~C~---~~~v~~L~L~~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~l~~l 120 (366)
+...|+.-. ..+++.|+|++|.++|. +|..++ ++++|++|+|++|.+.|.+|..|+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 455564321 46899999999999986 999999 99999999999999999999999999
Q ss_pred CCCCeeeccCCc-CCC-CCCcccCCC------CCCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764 121 EELEVLDFGHNN-FSG-PLPNDLGIN------HSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l------~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|++|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .++++++|++|++++|+++|.+|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 999999999998 998 899988876 99999999999999 8998 89999999999999999999999
No 50
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=6.7e-14 Score=122.57 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=96.8
Q ss_pred EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (366)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N 155 (366)
+.+++++|+++ .+|..+. .+|++|+|++|.|+ .+|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 47899999998 6787654 68999999999998 78899999999999999999999877778999999999999999
Q ss_pred CCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++++..+..|..+++|++|+|++|++++..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9998888889999999999999999996444
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=5e-14 Score=139.04 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=95.4
Q ss_pred cceeeeC-----------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764 65 WFGVECS-----------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (366)
Q Consensus 65 w~Gv~C~-----------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l 133 (366)
|..|.|. ..+++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 5677776 13689999999999988888899999999999999999988888999999999999999999
Q ss_pred CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCC
Q 017764 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181 (366)
Q Consensus 134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l 181 (366)
++..+..+..+++|++|+|++|.+++..+..|.++++|+.|++++|+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence 965556688899999999999998855444555555555555555433
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=8.6e-14 Score=136.88 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=92.8
Q ss_pred cceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764 65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (366)
Q Consensus 65 w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l 133 (366)
|..|.|.. .+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 56777751 3578899999999877777888899999999999998877778888889999999999988
Q ss_pred CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++..+..+..+++|++|+|++|.+++..+..|.++++|++|++++|+..+.++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 85544568888888888888888875555456666666666666644443333
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.2e-13 Score=128.56 Aligned_cols=113 Identities=21% Similarity=0.173 Sum_probs=87.1
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.|. .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 46777888888777 66777788888888888888888766677888888888888888888655555778888888888
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++++..+..|..+++|++|+|++|+|+ .+|.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 888888544445677888888888888887 4443
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=138.94 Aligned_cols=122 Identities=21% Similarity=0.181 Sum_probs=96.1
Q ss_pred cceeeeC-----------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764 65 WFGVECS-----------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (366)
Q Consensus 65 w~Gv~C~-----------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l 133 (366)
|..|.|. ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 5677775 13678888888888877777788888888888888888887788888888888888888888
Q ss_pred CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 85444457788888888888888887777777888888888888887776554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=4.8e-14 Score=131.66 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+.+ .+|..+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 356666676666665 3555666666677777777766666566666666677777777766654444566666677777
Q ss_pred ccCCCCCCCChhhhhCCC-CCCEEeccCCCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~ 182 (366)
|++|.+++..|..+..++ +|++|++++|+|+
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 777766666666666663 6667777776665
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=6.6e-14 Score=143.12 Aligned_cols=109 Identities=22% Similarity=0.209 Sum_probs=59.6
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+.+++|++|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 34555555555544444555555555555555555555555555555555555555555532222345555555555555
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
|.+++..|..|..+++|++|++++|.+++
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 55555555555555556666666555554
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=9.1e-14 Score=127.91 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=103.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|++++|++.+..+..+..+++|++|+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 57999999999999776668999999999999999999888888999999999999999999766667999999999999
Q ss_pred cCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|.+++ .+|..+.++++|++|++++|++++..+.
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9999986 4789999999999999999999876543
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=150.63 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCC-----CCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764 74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~-----g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (366)
+++.|+|++|.+++..+. .+..+++|++|+|++|.++ +..+..|..+++|++|+|++|++++..|..+..+++|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 445555555555533222 2334555566666666554 2333456666777777777777776666666777777
Q ss_pred cEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764 148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 148 ~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~ 188 (366)
+.|+|++|++++..+..+. ++|+.|++++|+|+|.+|..
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 7777777777754444333 66777777777777766643
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.3e-13 Score=125.03 Aligned_cols=110 Identities=23% Similarity=0.244 Sum_probs=50.7
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+.+..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 34444444444443322334444444444444444444444444444555555555555443222234445555555555
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
+|.+++..+..|..+++|++|++++|++++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 555553333344455555555555555543
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=8.5e-14 Score=141.91 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=100.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..++++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 36889999999999877888999999999999999999888888999999999999999998888888899999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc-cCCccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKEQ 189 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g-~iP~~~ 189 (366)
++|.+++..+..+.++++|++|++++|++++ .+|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence 9999886656778888888999998888887 445433
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=4.5e-14 Score=143.94 Aligned_cols=156 Identities=14% Similarity=0.062 Sum_probs=115.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCC---CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI---IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~---~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 149 (366)
.+++.|+|++|.+.+..+..+.++++|++|+|++|.+++. .+..+..+++|++|+|++|++++..|..+..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 4688899999988887787888888899999998888762 3356788888888888888888777888888888888
Q ss_pred EEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccCch----hh--------hcc
Q 017764 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDED----TV--------QRR 210 (366)
Q Consensus 150 L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~~~----~~--------~~~ 210 (366)
|+|++|++++..|..+.++++| +|++++|++++.+|.... -....+.|.+.+... +. ...
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~ 583 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTE 583 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCC
Confidence 8888888888888888888888 888888888876664211 112222222222211 11 124
Q ss_pred cccccccccccCcccCCCC
Q 017764 211 LLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 211 ~~~c~~~~~~~g~~l~~~~ 229 (366)
...|..+..++|..+...+
T Consensus 584 ~~~C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 584 DTLCENPPLLRGVRLSDVT 602 (606)
T ss_dssp GCBEEESGGGTTCBGGGCC
T ss_pred CCeeCCchHhCCCeeeeee
Confidence 5679999999999886654
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.7e-13 Score=127.71 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=102.5
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 57899999999999776677999999999999999999877777899999999999999999544445688999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERS 195 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~ 195 (366)
++|+++ .+|..+..+.+|+.|+|++|+|. |.|....
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~------C~c~~~~ 215 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL------CNCEILY 215 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCBC------CSGGGHH
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCcc------CcCccHH
Confidence 999999 88999999999999999999986 6665443
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=148.56 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=76.0
Q ss_pred CEEEEEccCCCCCCcC-cccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc--cCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND--LGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~--l~~l~~L~~L 150 (366)
+++.|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. +.++++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 4455555555444444 445666777777777777777666777777777777777777777655554 6677777777
Q ss_pred EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCcc
Q 017764 151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKE 188 (366)
Q Consensus 151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~~ 188 (366)
+|++|.+++..+ ..|+++++|++|++++|.+++..+..
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 777777765544 46777777777777777777666543
No 64
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=132.80 Aligned_cols=110 Identities=21% Similarity=0.175 Sum_probs=98.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.|++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 57999999999999777778999999999999999999877778999999999999999999877889999999999999
Q ss_pred cCCCCCCCChhh-h---hCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVGSLSPE-I---YKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g~iP~~-l---~~l~~L~~L~l~~N~l~g 183 (366)
++|+|++ +|.. | ..+++|++|+|++|+|++
T Consensus 144 ~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 144 SQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9999995 5554 4 579999999999999985
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=8.4e-14 Score=121.97 Aligned_cols=108 Identities=11% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+. ....+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 57899999999765 3347899999999999999999888889999999999999999999878888999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|.+.+.++ .+..+++|++|++++|++++
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 9998444776 68999999999999999986
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.2e-13 Score=117.57 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=96.7
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L 150 (366)
.+++.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+++ ++ ..+..+++|++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence 5799999999999965 779999999999999999998888888889999999999999995 44 688999999999
Q ss_pred EccCCCCCCCCh---hhhhCCCCCCEEeccCCCCc
Q 017764 151 LLDNNDFVGSLS---PEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 151 ~L~~N~l~g~iP---~~l~~l~~L~~L~l~~N~l~ 182 (366)
+|++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999996554 47899999999999999886
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.46 E-value=1.9e-13 Score=141.25 Aligned_cols=112 Identities=24% Similarity=0.236 Sum_probs=54.5
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 45555555555554444445555555555555555554444444555555555555555542222234444555555555
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
+|++++..|..|+++++|++|++++|.+++..
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccC
Confidence 55544333344444444555555544444433
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=5.7e-13 Score=114.43 Aligned_cols=109 Identities=21% Similarity=0.239 Sum_probs=94.5
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
.+.++++++++. .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467999999998 5665443 7999999999999977777789999999999999999966556689999999999999
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++++..+..+..+++|++|++++|++++..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 99997777778999999999999999986544
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.45 E-value=2.3e-13 Score=131.48 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=62.5
Q ss_pred CEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
+++.|++++|.++. +|.. +.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|+|
T Consensus 46 ~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45566666666553 3333 455666666666666665554455566666666666666666544555556666666666
Q ss_pred cCCCCCCCChhh-hhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~-l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|.++ .+|.. |.++++|++|++++|++++..+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 666665 33332 4555666666666666554443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=6e-14 Score=131.79 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=55.0
Q ss_pred CEEEEEccCCCCCCcCcccc--cCCCCcCEEEccCCCCCCCCccccCCC-----CCCCeeeccCCcCCCCCCcccCCCCC
Q 017764 74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGINHS 146 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P~~l~~l-----~~L~~L~Ls~N~l~g~lP~~l~~l~~ 146 (366)
+++.|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+..+ ++|++|+|++|++++..+..++.+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 45555555555555555543 4555555555555555544 4444444 55555555555555444445555555
Q ss_pred CcEEEccCCCCCCC--Chhhh--hCCCCCCEEeccCCCCc
Q 017764 147 LTILLLDNNDFVGS--LSPEI--YKLQVLSESQVDEGQLS 182 (366)
Q Consensus 147 L~~L~L~~N~l~g~--iP~~l--~~l~~L~~L~l~~N~l~ 182 (366)
|++|+|++|++.|. ++..+ ..+++|++|++++|+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 55555555555443 22222 44555555555555554
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.45 E-value=3.4e-13 Score=127.53 Aligned_cols=122 Identities=22% Similarity=0.317 Sum_probs=107.9
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N 131 (366)
|.|..+.|.. .+++.|+|++|.+.+..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6899999961 36899999999999777778999999999999999999888999999999999999999
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc--cCCc
Q 017764 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKK 187 (366)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g--~iP~ 187 (366)
+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.++. ..+.
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 999 7887765 799999999999996666678999999999999999963 4443
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=4.6e-13 Score=126.38 Aligned_cols=118 Identities=24% Similarity=0.371 Sum_probs=100.7
Q ss_pred CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (366)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~ 130 (366)
.|.|..+.|.. ..++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46899999961 3688999999999977666899999999999999999988899999999999999999
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 9998 6776654 68888888888888776667778888888888888775
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=138.73 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=81.3
Q ss_pred CCEEEEEccCCCCCCcCc-ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC-CCCCcccCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~-g~lP~~l~~l~~L~~L 150 (366)
.+++.|+|++|.+.+..+ ..+.++++|++|++++|.+.+.+|..+.++++|++|+|++|.+. +.+|..+..+++|+.|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 356777777777776554 34667777777777777777767777777777777777777776 4566677777777777
Q ss_pred EccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 7777777766677777777777777777777765553
No 74
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=3.5e-13 Score=115.53 Aligned_cols=100 Identities=25% Similarity=0.257 Sum_probs=88.6
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N 131 (366)
|.|+.+.|+. .+++.|+|++|.|++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 6788888861 36899999999999888888999999999999999999777777899999999999999
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCCCCCCCh
Q 017764 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162 (366)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP 162 (366)
+|++..+..|..+++|++|+|++|.|+...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997656679999999999999999986543
No 75
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=7.9e-14 Score=116.34 Aligned_cols=105 Identities=17% Similarity=0.088 Sum_probs=93.7
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC-CCcccCCCCCCcEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTIL 150 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-lP~~l~~l~~L~~L 150 (366)
..+++.|+|++|.+++. ..+.++++|++|+|++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 35899999999999965 7799999999999999999988998888899999999999999962 34789999999999
Q ss_pred EccCCCCCCCCh---hhhhCCCCCCEEeccC
Q 017764 151 LLDNNDFVGSLS---PEIYKLQVLSESQVDE 178 (366)
Q Consensus 151 ~L~~N~l~g~iP---~~l~~l~~L~~L~l~~ 178 (366)
++++|.+++..+ ..+..+++|++|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999997655 4789999999999864
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=4.1e-13 Score=117.59 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46899999999998 666 6999999999999999776 3457899999999999999999888889999999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|.+++..+..+..+++|++|++++|++.+.+|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 9999998889999999999999999999555565
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=137.56 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=90.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 47888888888888777677888888888888888888777888888888888888888888 57766 7888888888
Q ss_pred cCCCCCC-CChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|.+++ .+|..|+++++|++|++++|++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 8888886 577888888888888888888765
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=134.89 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=103.3
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 56777777777774333457778888888888888887666777788888888888888887777778888888888888
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccccccccccccCccCchhhhcccccccccccccCcccCCCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
+|++++..+..|..+++|+.|++++|+|. +.|....+... ............|..+..++|..+...+
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------c~c~~~~~~~~--~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 372 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLA------CDCRLLWVFRR--RWRLNFNRQQPTCATPEFVQGKEFKDFP 372 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEE------CSGGGHHHHTT--TTSSCCTTCCCBEEESGGGTTCBGGGSC
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCcc------CccchHhHHhh--hhccccCccCceeCCchHHcCCchhhCc
Confidence 88888655556777788888888888876 44443322100 0001112345678888889888885544
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=2.7e-13 Score=135.44 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=103.0
Q ss_pred CCCcceeeeC-CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCc
Q 017764 62 PCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPN 139 (366)
Q Consensus 62 ~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~ 139 (366)
.|.+.++.|. ..+++.|+|++|.+++..+..+.++++|++|+|++|.+++.+|..+. .+++|++|+|++|.|++. +
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~- 185 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K- 185 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-
Confidence 3556666665 45789999999999988888899999999999999999998888876 799999999999999864 3
Q ss_pred ccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 140 ~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.|++ +|.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence 34468999999999999996 45568899999999999999996 554
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=5.1e-13 Score=136.51 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCCCCCCC----cceeeeC------------------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEc
Q 017764 47 YGALTSWRSCDTENNPCS----WFGVECS------------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL 104 (366)
Q Consensus 47 ~~~l~~W~~~~~~~~~C~----w~Gv~C~------------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~L 104 (366)
+..+.+|. .+.+||. |.++.|+ ..+++.|++++|.+....+..+.++++|++|+|
T Consensus 6 ~~~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 6 RYNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82 (597)
T ss_dssp -----CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEEC
T ss_pred cccccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC
Confidence 34467787 5566663 7666554 035788999999998544445788999999999
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 105 RNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 105 s~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
++|.+++..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|.+++.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 99999988888999999999999999999987777889999999999999999955555579999999999999999988
Q ss_pred CCcc
Q 017764 185 AKKE 188 (366)
Q Consensus 185 iP~~ 188 (366)
.|..
T Consensus 163 ~~~~ 166 (597)
T 3oja_B 163 EDDT 166 (597)
T ss_dssp CTTT
T ss_pred Chhh
Confidence 7753
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=8.6e-13 Score=127.40 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=100.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. +..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 47899999999999777778999999999999999999888888999999999999999999 56655 68999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
|++|.+++..+..+..+++|++|++++|++++.
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 999999987788899999999999999999853
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=6.4e-13 Score=134.12 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..++++++|++|+|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 46777788777777665666777788888888888877766677778888888888888877544445778888888888
Q ss_pred cCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|.+++ .+|..|+++++|++|++++|++++..+.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 8888876 4688888888888888888888765554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=3.9e-13 Score=121.12 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=92.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC-CCCCCccccCCCCCCCeeeccC-CcCCCCCCcccCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~~P~~l~~l~~L~~L~Ls~-N~l~g~lP~~l~~l~~L~~L 150 (366)
.+++.|+|++|++++..+..+.++++|++|+|++|. +++..+..|.++++|++|+|++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478899999999986666678899999999999997 8766666788999999999998 89986555678888999999
Q ss_pred EccCCCCCCCChhhhhCCCCCC---EEeccCC-CCcccCC
Q 017764 151 LLDNNDFVGSLSPEIYKLQVLS---ESQVDEG-QLSSAAK 186 (366)
Q Consensus 151 ~L~~N~l~g~iP~~l~~l~~L~---~L~l~~N-~l~g~iP 186 (366)
+|++|.+++ +|. +..+.+|+ +|++++| ++++..+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc
Confidence 999999885 676 77888888 8999888 7765444
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=1.1e-13 Score=147.11 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=106.8
Q ss_pred CCcceeeeC---CCCEEEEEccCCCCCC-----------------cCccccc--CCCCcCEEEccCCCCCCCCccccCCC
Q 017764 63 CSWFGVECS---DGKVVNLNLKDLCLEG-----------------TLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL 120 (366)
Q Consensus 63 C~w~Gv~C~---~~~v~~L~L~~n~l~g-----------------~~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~l~~l 120 (366)
+...|+.-. ..+++.|+|++|.|+| .+|..++ +|++|++|+|++|.+.+.+|..|.+|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 445554322 4689999999999998 4899988 99999999999999999999999999
Q ss_pred CCCCeeeccCCc-CCC-CCCcccCCCC-------CCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764 121 EELEVLDFGHNN-FSG-PLPNDLGINH-------SLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l~-------~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|++|+|++|+ ++| .+|..++.+. +|++|+|++|+++ .+|. .+.++++|+.|+|++|+++ .||
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 999999999998 998 8887666554 9999999999999 8888 8999999999999999998 887
No 85
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.9e-13 Score=114.94 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=90.5
Q ss_pred CCEEEEEccCCCCCCcCcccccCCC-CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L 150 (366)
.+++.|+|++|.++ .++. +..+. +|++|+|++|.+++. ..+..+++|++|+|++|++++ +|.. +..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEE
Confidence 47899999999998 4554 55555 999999999999965 678999999999999999995 5544 4889999999
Q ss_pred EccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764 151 LLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 151 ~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+|++|.++ .+|. .+..+++|++|++++|+++ .+|
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~ 129 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKK 129 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcH
Confidence 99999996 6776 7899999999999999997 344
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.39 E-value=2.7e-13 Score=136.41 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=105.5
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL 150 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L 150 (366)
..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 3589999999999998888889999999999999999998877779999999999999999986 467789999999999
Q ss_pred EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCccc
Q 017764 151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (366)
Q Consensus 151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~~~ 189 (366)
+|++|.+.+.+| ..+.++++|++|++++|++++.+|...
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 999999666666 579999999999999999998877543
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=2.5e-13 Score=127.55 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=95.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCC-----CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC--CCccc--CC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDL--GI 143 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--lP~~l--~~ 143 (366)
.+++.|+|++|.+++. |..+..+ ++|++|+|++|.+++..+..|..+++|++|+|++|++.+. ++..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 5789999999999976 7777777 8999999999999988889999999999999999998765 34444 78
Q ss_pred CCCCcEEEccCCCCCC--CCh-hhhhCCCCCCEEeccCCCCcccCC
Q 017764 144 NHSLTILLLDNNDFVG--SLS-PEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 144 l~~L~~L~L~~N~l~g--~iP-~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+++|++|+|++|++++ .++ ..+.++++|++|++++|++++.+|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 8999999999999983 233 234688999999999999998775
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=8.2e-13 Score=136.52 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=62.6
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.+++..|..+.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..++++++|++|+|+
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 45566666666655555555555666666666665554333345555556666666555554444455555555555555
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
+|.+++..+..+.++++|++|++++|.+++..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccC
Confidence 55555555555555555555555555555443
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=4.3e-13 Score=136.24 Aligned_cols=118 Identities=27% Similarity=0.357 Sum_probs=90.5
Q ss_pred CCCCCCCCCCCCC-----Cccee-eeCCCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCC
Q 017764 51 TSWRSCDTENNPC-----SWFGV-ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE 124 (366)
Q Consensus 51 ~~W~~~~~~~~~C-----~w~Gv-~C~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 124 (366)
.+|. .+.++| .|.|+ .|..++++.|+|++|+|++ +|..+. ++|++|+|++|.|+ .+| ..+++|+
T Consensus 34 ~~W~---~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~ 103 (571)
T 3cvr_A 34 DKWE---KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE 103 (571)
T ss_dssp HHHH---TTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred HHHh---ccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence 3565 456677 69999 7876789999999999986 777663 78899999999888 577 4578888
Q ss_pred eeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 125 VLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 125 ~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
+|+|++|+|++ +|. +.. +|++|+|++|+|++ +|. .+++|+.|++++|+|++ +|.
T Consensus 104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE 157 (571)
T ss_dssp EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence 88888888886 776 554 78888888888875 665 56777777777777776 554
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=6.8e-13 Score=126.49 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=100.5
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTI 149 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~ 149 (366)
..+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+|. .+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 357999999999999877778999999999999999999655555899999999999999999 5665 6889999999
Q ss_pred EEccCCC-CCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764 150 LLLDNND-FVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (366)
Q Consensus 150 L~L~~N~-l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~ 189 (366)
|++++|+ +.+..+..+.++++|++|++++|++++..|...
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 9999995 665556788999999999999999998777543
No 91
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=7.1e-14 Score=146.21 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=98.9
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+|+.|+|++|.|+ .+|..|.+|++|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|+.+++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 357999999999999 89999999999999999999999 78999999999999999999998 8999999999999999
Q ss_pred ccCCCCCCCChhhhhCCC-CCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~g~iP~ 187 (366)
|++|.|+|.+|..+..+. .+..|+|++|.++|.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999988775542 122356777777777765
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=5e-13 Score=114.85 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=93.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTIL 150 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L 150 (366)
.+++.|+|++|.+++. ..+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|. .+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3799999999999964 67999999999999999999654455589999999999999996 6776 78899999999
Q ss_pred EccCCCCCCCChhh----hhCCCCCCEEeccCCCCc
Q 017764 151 LLDNNDFVGSLSPE----IYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 151 ~L~~N~l~g~iP~~----l~~l~~L~~L~l~~N~l~ 182 (366)
+|++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 66764 899999999999999865
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=1.1e-12 Score=118.03 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=98.5
Q ss_pred CCEEEEEccCCC-CCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCc--
Q 017764 73 GKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-- 148 (366)
Q Consensus 73 ~~v~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-- 148 (366)
.+++.|+|++|. +++..+..+.++++|++|+|++ |.+++..+..|.++++|++|++++|++++ +|. +..+.+|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 579999999997 8755555799999999999998 99997777789999999999999999995 786 88888888
Q ss_pred -EEEccCC-CCCCCChhhhhCCCCCC-EEeccCCCCcccCCc
Q 017764 149 -ILLLDNN-DFVGSLSPEIYKLQVLS-ESQVDEGQLSSAAKK 187 (366)
Q Consensus 149 -~L~L~~N-~l~g~iP~~l~~l~~L~-~L~l~~N~l~g~iP~ 187 (366)
+|++++| .+++..+..|.++++|+ +|++++|+++ .+|.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 9999999 99866666789999999 9999999998 6664
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=129.69 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=42.3
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL 150 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L 150 (366)
+++.|+|++|.+++.+|..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++.+|.. +..+++|+.|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 45555555555555555555555555555555555554 33444555555555555555555434432 3333333333
Q ss_pred EccCCCC
Q 017764 151 LLDNNDF 157 (366)
Q Consensus 151 ~L~~N~l 157 (366)
+|++|.+
T Consensus 405 ~Ls~N~l 411 (520)
T 2z7x_B 405 NMSSNIL 411 (520)
T ss_dssp ECCSSCC
T ss_pred ECcCCCC
Confidence 3333333
No 95
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=4.6e-12 Score=108.99 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=78.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.|++..|..|.++++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 36899999999999888888999999999999999999766666789999999999999999654455999999999999
Q ss_pred cCCCCCCC
Q 017764 153 DNNDFVGS 160 (366)
Q Consensus 153 ~~N~l~g~ 160 (366)
++|.|...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99999844
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=6.7e-13 Score=124.42 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=74.7
Q ss_pred CCEEEEEccCCCCCCcCc----ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC--CC--cccCCC
Q 017764 73 GKVVNLNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LP--NDLGIN 144 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--lP--~~l~~l 144 (366)
.+++.|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+. ++ ..+..+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 356777777777776544 2345677777777777777766667777777777777777776542 21 223566
Q ss_pred CCCcEEEccCCCCCCCChh----hhhCCCCCCEEeccCCCCcccCCc
Q 017764 145 HSLTILLLDNNDFVGSLSP----EIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 145 ~~L~~L~L~~N~l~g~iP~----~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|++|+|++|+++ .++. .+..+++|++|+|++|++++.+|.
T Consensus 197 ~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 197 PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 77777777777775 3333 245667777777777777776554
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.32 E-value=2e-12 Score=130.89 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=44.3
Q ss_pred cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC--CCCcccCCCCCCcEEEccCCCCCCCChhh-hhCCCC
Q 017764 94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQV 170 (366)
Q Consensus 94 ~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~L~~N~l~g~iP~~-l~~l~~ 170 (366)
..+++|++|+|++|.+++.+|..+.++++|++|+|++|++++ .+|..+..+++|++|+|++|++++.+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344445555555555554444455555555555555555543 11233444555555555555555434332 344445
Q ss_pred CCEEeccCCCCcccCC
Q 017764 171 LSESQVDEGQLSSAAK 186 (366)
Q Consensus 171 L~~L~l~~N~l~g~iP 186 (366)
|++|++++|++++.+|
T Consensus 430 L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCEEECCSSCCCGGGG
T ss_pred CCEEECCCCCCCcchh
Confidence 5555555555544443
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=5.6e-12 Score=118.91 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|
T Consensus 171 ~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 57899999999998 4666554 78999999999999888889999999999999999999777778889999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 999999 8888999999999999999999865443
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=3.9e-12 Score=119.61 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=86.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|.+++ ++ ....+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc-cccccccCCEEE
Confidence 4578888888888876666788888899999999988877666663 68888888888888884 33 334578888889
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
|++|++++ +|..+..+++|++|++++|++++ +|.
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~ 231 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred CCCCcCCc-chhhhcccCcccEEECcCCcccc-hhh
Confidence 98888884 55568888889999999888884 454
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=121.80 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=89.5
Q ss_pred CEEEEEccCCCCCCcCcccc--cCCCCcCEEEccCCCCCCCCc----cccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764 74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P----~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (366)
+++.|+|++|.+.+..|..+ .++++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 48889999999988888887 888999999999999987655 345578899999999999987777888889999
Q ss_pred cEEEccCCCCCCC--Chh--hhhCCCCCCEEeccCCCCc
Q 017764 148 TILLLDNNDFVGS--LSP--EIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 148 ~~L~L~~N~l~g~--iP~--~l~~l~~L~~L~l~~N~l~ 182 (366)
++|+|++|++.+. ++. .+..+++|++|++++|+++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 9999999988753 222 2367889999999999886
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=3.4e-12 Score=120.57 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=97.7
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|++++|.+++ +|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 68899999999985 676554 789999999999998888899999999999999999998777789999999999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
+|+++ .+|..+..+++|++|++++|++++..+
T Consensus 250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 99999 889999999999999999999986544
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=1.3e-11 Score=114.88 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=83.1
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++. +. +.++++|++|+|++|.+++ ++ .+..+++|++|+|++|++++ + ..+..+++|+.|+|
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 5788888888888854 33 8888888888888888875 33 48888888888888888885 3 46778888888888
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|++++. ..+..+++|++|++++|++++..+
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 88888854 567888888888888888876554
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=2.8e-12 Score=128.05 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=32.0
Q ss_pred CCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhh-CCCCCCEEeccCCCCccc
Q 017764 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY-KLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 122 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~-~l~~L~~L~l~~N~l~g~ 184 (366)
+|++|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.|++.
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 344444444444444444455555555555555555555554443 455555555555555543
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=5.6e-12 Score=118.50 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=94.5
Q ss_pred CCEEEEEccCCCCCCcCcccc-cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|.+++..+..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|++++ +|..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 579999999999998777766 4799999999999999865 3 34469999999999999994 666799999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|++|.++ .+|..+..+++|+.|++++|++.
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999 67888999999999999999998
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=2.1e-11 Score=111.84 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++. +. +.++++|++|+|++|.+++ ++. +.. .+|++|+|++|++++ ++ .+..+++|+.|+|
T Consensus 63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 4677777777777643 33 6777777777777777764 333 222 677777777777764 33 4667777777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
++|++++ ++ .+..+++|++|++++|++++.
T Consensus 136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 7777774 33 567777777777777777654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=2.4e-11 Score=111.43 Aligned_cols=103 Identities=26% Similarity=0.365 Sum_probs=88.9
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.++ .++ .+..+++|++|+|++|.+++. +. +..+++|++|+|++|++++ +|... . .+|+.|+|
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEc
Confidence 57899999999998 466 789999999999999999964 44 9999999999999999995 55433 3 89999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCCC
Confidence 9999995 44 689999999999999999874
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=9.6e-12 Score=126.45 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=91.9
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCC-CcccCCCCCCcEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLGINHSLTIL 150 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~l-P~~l~~l~~L~~L 150 (366)
..+++.|+|++|.|+ .+|..+++|++|++|+|++|.|++ +| .++.|++|++|+|++|+|++.. |..++.+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 357999999999999 889999999999999999999997 77 8999999999999999999876 9999999999999
Q ss_pred EccCCCCCCCChh---hhhCCCCCCEEec
Q 017764 151 LLDNNDFVGSLSP---EIYKLQVLSESQV 176 (366)
Q Consensus 151 ~L~~N~l~g~iP~---~l~~l~~L~~L~l 176 (366)
+|++|.|++..|. .+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999976553 3455899999975
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1.9e-11 Score=113.73 Aligned_cols=104 Identities=24% Similarity=0.324 Sum_probs=91.9
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|+|++|.+++ ++ .+.++++|++|+|++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|+
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 4579999999999986 44 599999999999999999863 5688999999999999999964 6788999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
|++|.+++..+ +..+++|++|++++|++++
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 99999996544 8999999999999999985
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=2.2e-11 Score=115.36 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=65.9
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++. +. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|+.|+|
T Consensus 221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 3456666666666532 22 5666666666666666654 2 345666666666666666664 3 34556666666666
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|.+++..+..+..+++|++|++++|++++..|
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 6666666666666666666666666666665544
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=3.3e-11 Score=112.92 Aligned_cols=103 Identities=26% Similarity=0.430 Sum_probs=66.6
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+.+ ++. +.++++|++|+|++|.+++ ++ .+..+++|++|+|++|++++ ++ .+..+++|++|+|
T Consensus 63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEEC
Confidence 466777777777764 333 6677777777777777764 33 46667777777777777764 33 2666667777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|.+++. +. +..+++|++|++++|++++
T Consensus 137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred CCCccCcC-cc-ccCCCCccEEEccCCcCCC
Confidence 77766643 32 6666667777776666664
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=2.4e-11 Score=113.87 Aligned_cols=107 Identities=22% Similarity=0.352 Sum_probs=85.0
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|+|++|.+++ ++ .+.++++|++|+|++|.+++ ++. +..+++|++|++++|++++ ++. +..+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence 3578899999999885 33 68888999999999999886 443 8888899999999998885 443 77888888888
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++|.+++ ++. +..+++|+.|++++|++++..+
T Consensus 158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 158 IGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence 88888884 444 7888888888888888876443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=5.4e-11 Score=121.80 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+|+.|+|++|.|.+..+ +..|++|+.|+|++|.|++ ++ .+..|++|+.|+|++|++.+ + ..+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 467777887777775433 7777777777777777764 33 56777777777777777774 3 34666777777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|.+++. ..+..+++|+.|+|++|.|++..|
T Consensus 139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 77777743 456677777777777777766555
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.7e-11 Score=124.48 Aligned_cols=93 Identities=25% Similarity=0.247 Sum_probs=50.8
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
+++.|+|++|.|++ +|. .+++|++|+|++|.|++ +|. .+++|++|+|++|+|++ +|. +. ++|+.|+|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 55666666666664 444 45666666666666664 444 45566666666666664 554 43 555555555
Q ss_pred CCCCCCCChhhhhCCCCC-------CEEeccCCCCc
Q 017764 154 NNDFVGSLSPEIYKLQVL-------SESQVDEGQLS 182 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L-------~~L~l~~N~l~ 182 (366)
+|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 55555 4444 322 34 55555555554
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.22 E-value=1.7e-11 Score=116.05 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|+|++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 242 l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 3579999999999986 3 4689999999999999999964 4688999999999999999988888899999999999
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
|++|.+++..| +..+++|+.|++++|.|+
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999997655 889999999999999985
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=5.1e-11 Score=121.93 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=78.8
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+|+.|+|++|.|.+ ++ .+..|++|++|+|++|.+++ + ..+..|++|+.|+|++|++++. ..+..+++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 3578888888888875 33 67788888888888888875 3 3577788888888888888753 5677788888888
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
|++|.+++..| +..+++|+.|+|++|+|++
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 88888876554 7777888888888887775
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.1e-13 Score=121.39 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=94.3
Q ss_pred CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
..+++.|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 3578999999999986 67 8899999999999999998 678877788999999999999985 55 678889999999
Q ss_pred ccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcccCCc
Q 017764 152 LDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAAKK 187 (366)
Q Consensus 152 L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g~iP~ 187 (366)
|++|++++ ++ ..+..+++|++|++++|++++.+|.
T Consensus 122 l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 122 MSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999984 34 4788999999999999999877653
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.4e-13 Score=120.65 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=91.2
Q ss_pred CEEEEEccCCCCCCcCcc------cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764 74 KVVNLNLKDLCLEGTLAP------EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~------~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (366)
+++.++|+++.+.|.+|. .+.++++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455556666666666665 89999999999999999996 77 8999999999999999999 788878788999
Q ss_pred cEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764 148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 148 ~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|+|++|++++ +| .+..+++|++|++++|++++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 999999999995 56 68899999999999999985
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=8.6e-11 Score=116.29 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++. + +..+++|++|+|++|.+++. + ++++++|++|++++|++++ ++ ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3556666666666542 2 55666666666666666542 2 5566666666666666664 33 556666666666
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i 185 (366)
++|++++ ++ ++.+++|++|++++|++.+.+
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence 6666664 22 556666666666666555544
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=6e-11 Score=117.37 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=77.9
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+|++|++++..+ +..+++|+.|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 468888888888876543 7788888888888888875433 7778888888888888875333 677788888888
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
++|++++..| +..+++|+.|++++|++++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 8888876554 66777888888888877764
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=7e-11 Score=116.85 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=92.7
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++..+ +..+++|++|+|++|.+++..+ +..+++|++|+|++|++++..| +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 578999999999986433 8899999999999999997544 7899999999999999997655 778999999999
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
++|.+++. ..+.++++|+.|++++|++++.+|
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 99999965 478899999999999999998877
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=6.9e-11 Score=112.65 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=87.0
Q ss_pred CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCcc-ccCCCCCCCe-eecc
Q 017764 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEV-LDFG 129 (366)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~-L~Ls 129 (366)
|.|..|.|+. .+++.|+|++|+|+..-+..|.+|++|++|+|++|.+.+.+|. .|.++++|++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 6888999961 3688999999999843334689999999999999998776664 5778888775 5667
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccC
Q 017764 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE 178 (366)
Q Consensus 130 ~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~ 178 (366)
.|+++...|..|..+++|++|++++|++++..+..+....++..|++.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 7888866677788899999999999988855444444444555555544
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=3.8e-10 Score=111.65 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=49.6
Q ss_pred ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCC
Q 017764 93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172 (366)
Q Consensus 93 l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~ 172 (366)
+..+++|++|++++|.+++ +| +..+++|+.|++++|++++. .++.+++|+.|+|++|++++ +| +..+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 3444555555555555554 33 55555566666666665542 35566666677777777665 44 66667777
Q ss_pred EEeccCCCCcccC
Q 017764 173 ESQVDEGQLSSAA 185 (366)
Q Consensus 173 ~L~l~~N~l~g~i 185 (366)
.|++++|++++..
T Consensus 237 ~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 237 YFDCSVNPLTELD 249 (457)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEEeeCCcCCCcC
Confidence 7777777776643
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=9.6e-12 Score=119.94 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=62.4
Q ss_pred CCEEEEEccCCCCC-CcCc---ccccCCCCcCEEEccCCCCC--C---CCccccCCCCCCCeeeccCCcCC----CCCCc
Q 017764 73 GKVVNLNLKDLCLE-GTLA---PEIQSLTHIKSIILRNNSFS--G---IIPEGFGELEELEVLDFGHNNFS----GPLPN 139 (366)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~~P~~l~~l~~L~~L~Ls~N~l~----g~lP~ 139 (366)
.+++.|+|++|.++ +.++ ..+..+++|++|+|++|.++ | .++..+..+++|++|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45666666666665 2333 24455566666666666665 2 23335556666666666666664 34555
Q ss_pred ccCCCCCCcEEEccCCCCCCC----Chhhhh--CCCCCCEEeccCCCCcc
Q 017764 140 DLGINHSLTILLLDNNDFVGS----LSPEIY--KLQVLSESQVDEGQLSS 183 (366)
Q Consensus 140 ~l~~l~~L~~L~L~~N~l~g~----iP~~l~--~l~~L~~L~l~~N~l~g 183 (366)
.+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 555666666666666666543 344442 25666666666666655
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=1.5e-11 Score=115.94 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCC-CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|++++|.+.+..+. +.++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3566666666666654433 45566666666666666544 555566666666666666666655555666666666666
Q ss_pred ccCC-CCCCC-ChhhhhCCCCCCEEeccCC-CCcc
Q 017764 152 LDNN-DFVGS-LSPEIYKLQVLSESQVDEG-QLSS 183 (366)
Q Consensus 152 L~~N-~l~g~-iP~~l~~l~~L~~L~l~~N-~l~g 183 (366)
|++| .+++. ++..+.++++|++|++++| .+++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 6666 45542 4555566666666666666 5553
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.10 E-value=1e-11 Score=117.01 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=103.8
Q ss_pred CCCcceeeeCCCCEEEEEccCCCCCCcCcccccCC--CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC-CC
Q 017764 62 PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LP 138 (366)
Q Consensus 62 ~C~w~Gv~C~~~~v~~L~L~~n~l~g~~p~~l~~L--~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-lP 138 (366)
|..|.++.|+...++.|+++++.+. +..+..+ .+++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++
T Consensus 36 c~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 36 CKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp CHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 4469998887667889999999887 4557777 8999999999999987665 66899999999999999866 78
Q ss_pred cccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCC-CCcc
Q 017764 139 NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSS 183 (366)
Q Consensus 139 ~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N-~l~g 183 (366)
..+..+++|++|+|++|.+++..+..+..+++|++|++++| .+++
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 88899999999999999999888999999999999999999 6775
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=3.3e-10 Score=111.98 Aligned_cols=102 Identities=29% Similarity=0.373 Sum_probs=57.8
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (366)
.+++.|+|++|.+++ +| ++.++++|++|++++|.+++ +|..+ .+|++|++++|++++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356677777777764 55 47777777777777777764 44322 355555555555553 44 3555555555555
Q ss_pred cCCCCCC-------------------CChhhhhCCCCCCEEeccCCCCcc
Q 017764 153 DNNDFVG-------------------SLSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 153 ~~N~l~g-------------------~iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
++|.+++ .+| .++.+++|++|++++|++++
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 5444443 333 24555556666666655554
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.4e-10 Score=110.09 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=76.3
Q ss_pred CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++ |.|++..+..|.+|++|++|+|++|.|++..|..|.+|++|++|+|++|+|++..+..+..+. |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4799999996 999987778899999999999999999999999999999999999999999954444455555 99999
Q ss_pred ccCCCCCCC
Q 017764 152 LDNNDFVGS 160 (366)
Q Consensus 152 L~~N~l~g~ 160 (366)
|.+|.|...
T Consensus 110 l~~N~~~c~ 118 (347)
T 2ifg_A 110 LSGNPLHCS 118 (347)
T ss_dssp CCSSCCCCC
T ss_pred eeCCCccCC
Confidence 999999854
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=1.3e-10 Score=114.86 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc--cCCcc
Q 017764 121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKKE 188 (366)
Q Consensus 121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g--~iP~~ 188 (366)
++|++|++++|++++ +|.. +++|+.|+|++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 466777777777764 5543 356777777777776 4555 35667777777777776 56643
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=7.8e-11 Score=120.92 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCCcceeee--------CCCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCC
Q 017764 51 TSWRSCDTENNPCSWFGVEC--------SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE 122 (366)
Q Consensus 51 ~~W~~~~~~~~~C~w~Gv~C--------~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~ 122 (366)
..|. .+.++|.|.|..| ...+++.|++++|+|+ .+|..+. ++|++|+|++|.|+ .+|. .+++
T Consensus 13 ~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 13 SAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 4565 4567788866432 2335677777777776 6666554 56777777777776 3554 4566
Q ss_pred CCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCC
Q 017764 123 LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV 158 (366)
Q Consensus 123 L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 158 (366)
|++|+|++|+|+ .+|. .+++|++|+|++|+++
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 677777777666 3554 4455666666666555
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=3e-10 Score=116.53 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEec
Q 017764 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176 (366)
Q Consensus 97 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l 176 (366)
++|++|+|++|.|++ +| ..+++|++|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445566666666553 44 34456666666666666 4554 4456667777777766 66666667777777777
Q ss_pred cCCCCcccCC
Q 017764 177 DEGQLSSAAK 186 (366)
Q Consensus 177 ~~N~l~g~iP 186 (366)
++|+|+|.+|
T Consensus 292 ~~N~l~~~~~ 301 (622)
T 3g06_A 292 EGNPLSERTL 301 (622)
T ss_dssp CSCCCCHHHH
T ss_pred cCCCCCCcCH
Confidence 7777766554
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.02 E-value=4.6e-11 Score=115.16 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCEEEEEccCCCCC--C---cCcccccCCCCcCEEEccCCCCC----CCCccccCCCCCCCeeeccCCcCCCC----CCc
Q 017764 73 GKVVNLNLKDLCLE--G---TLAPEIQSLTHIKSIILRNNSFS----GIIPEGFGELEELEVLDFGHNNFSGP----LPN 139 (366)
Q Consensus 73 ~~v~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~~P~~l~~l~~L~~L~Ls~N~l~g~----lP~ 139 (366)
.+++.|+|++|.++ | .++..+.++++|++|+|++|.++ +.++..+..+++|++|+|++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 35666666666665 2 23335566666666666666664 44556666666666666666666543 344
Q ss_pred cc--CCCCCCcEEEccCCCCCC----CChhhh-hCCCCCCEEeccCCCCcccC
Q 017764 140 DL--GINHSLTILLLDNNDFVG----SLSPEI-YKLQVLSESQVDEGQLSSAA 185 (366)
Q Consensus 140 ~l--~~l~~L~~L~L~~N~l~g----~iP~~l-~~l~~L~~L~l~~N~l~g~i 185 (366)
.+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44 336666666666666665 355555 45666666666666666544
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=6.7e-11 Score=113.20 Aligned_cols=113 Identities=23% Similarity=0.242 Sum_probs=77.2
Q ss_pred CEEEEEccCCCCCCcCcccccCC-----CCcCEEEccCCCCCCCCccccC----CC-CCCCeeeccCCcCCCCCCccc--
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFG----EL-EELEVLDFGHNNFSGPLPNDL-- 141 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~l~----~l-~~L~~L~Ls~N~l~g~lP~~l-- 141 (366)
+++.|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+. .+ ++|++|+|++|++++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67888888888876666556554 7788888888888766555333 33 778888888888875544333
Q ss_pred --CC-CCCCcEEEccCCCCCCCCh----hhhhCCC-CCCEEeccCCCCcccCC
Q 017764 142 --GI-NHSLTILLLDNNDFVGSLS----PEIYKLQ-VLSESQVDEGQLSSAAK 186 (366)
Q Consensus 142 --~~-l~~L~~L~L~~N~l~g~iP----~~l~~l~-~L~~L~l~~N~l~g~iP 186 (366)
.. ..+|++|+|++|.+++... ..+..+. +|++|+|++|++++..+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 33 2578888888888875433 3345555 78888888888876554
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=1.2e-10 Score=111.35 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=92.7
Q ss_pred CCEEEEEccCCCCCCcCc----ccccCCC-CcCEEEccCCCCCCCCccccCCC-----CCCCeeeccCCcCCCCCCccc-
Q 017764 73 GKVVNLNLKDLCLEGTLA----PEIQSLT-HIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDL- 141 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l-----~~L~~L~Ls~N~l~g~lP~~l- 141 (366)
.+++.|+|++|.+++..+ ..+.+++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999987655 6678888 89999999999998877777765 999999999999997666543
Q ss_pred ---CCC-CCCcEEEccCCCCCCCChhhhh----C-CCCCCEEeccCCCCccc
Q 017764 142 ---GIN-HSLTILLLDNNDFVGSLSPEIY----K-LQVLSESQVDEGQLSSA 184 (366)
Q Consensus 142 ---~~l-~~L~~L~L~~N~l~g~iP~~l~----~-l~~L~~L~l~~N~l~g~ 184 (366)
..+ ++|+.|+|++|.+++..+..+. . ..+|++|+|++|.+++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 344 8999999999999977766544 3 36999999999999853
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.97 E-value=7.7e-10 Score=105.32 Aligned_cols=107 Identities=8% Similarity=0.076 Sum_probs=90.6
Q ss_pred EEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc-ccCCCCCCcE-EEccC
Q 017764 77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTI-LLLDN 154 (366)
Q Consensus 77 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~-L~L~~ 154 (366)
.++-++++|+ .+|..+ .++|++|+|++|.|+...+..|.+|++|++|+|++|++.+.+|. .|.++++|+. ++++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5778899998 788776 36899999999999955456799999999999999999877775 5788888764 67788
Q ss_pred CCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (366)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP 186 (366)
|++++..|..|..+++|++|++++|++.+..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCc
Confidence 99997778889999999999999999986544
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.81 E-value=1.9e-10 Score=112.92 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCCCCccccC-----CCCCCCeeeccCCcCCCC----CCc
Q 017764 73 GKVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFG-----ELEELEVLDFGHNNFSGP----LPN 139 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-----~l~~L~~L~Ls~N~l~g~----lP~ 139 (366)
.+++.|+|++|.++.. ++..+.++++|++|+|++|.+++..+..+. ..++|++|+|++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4566777777766643 455555566666666666666432222221 113455555555555432 223
Q ss_pred ccCCCCCCcEEEccCCCCCCCChhhhhC-----CCCCCEEeccCCCCc
Q 017764 140 DLGINHSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLS 182 (366)
Q Consensus 140 ~l~~l~~L~~L~L~~N~l~g~iP~~l~~-----l~~L~~L~l~~N~l~ 182 (366)
.+..+++|+.|+|++|.+++..+..+.. .++|++|++++|+++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3334444555555555444332222221 334444555444444
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=2.5e-10 Score=104.79 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCCCCCCeeeccCCcCCC--CCCcccCCCCCCcEEEccCCCCCCCChhhhhCCC--CCCEEeccCCCCcccCC
Q 017764 118 GELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ--VLSESQVDEGQLSSAAK 186 (366)
Q Consensus 118 ~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~--~L~~L~l~~N~l~g~iP 186 (366)
.++++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457899999999999997 4556677899999999999999965 3455555 99999999999998777
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.71 E-value=6.5e-10 Score=109.10 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCEEEEEccCCCCCCcC----ccc-ccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCCcccC-
Q 017764 73 GKVVNLNLKDLCLEGTL----APE-IQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDLG- 142 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~----p~~-l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~- 142 (366)
.+++.|+|++|.+++.- ... +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+..+..+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 57888999888876432 122 23578889999999888754 566677788899999998888643332222
Q ss_pred ----CCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCccc
Q 017764 143 ----INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA 184 (366)
Q Consensus 143 ----~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g~ 184 (366)
..++|+.|+|++|.+++. ++..+..+++|++|++++|++++.
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 236888999999988865 566677888899999999888754
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=3e-09 Score=102.46 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCC----Chhh
Q 017764 97 THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGS----LSPE 164 (366)
Q Consensus 97 ~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~----iP~~ 164 (366)
..|++|+|++|.|+.. +...+..+++|++|+|++|.|+.. +...+...++|+.|+|++|.++.. +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555555321 222334455555555555555421 122334444555555555555421 2223
Q ss_pred hhCCCCCCEEeccCCCCc
Q 017764 165 IYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 165 l~~l~~L~~L~l~~N~l~ 182 (366)
+...++|++|+|++|.|+
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 334455555666555554
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=5.9e-09 Score=95.62 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred cCCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcccCCCC--CCcEEEccCCCCCCCChh------
Q 017764 94 QSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSP------ 163 (366)
Q Consensus 94 ~~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~--~L~~L~L~~N~l~g~iP~------ 163 (366)
.++++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999998 5567777899999999999999964 3444444 999999999999987762
Q ss_pred -hhhCCCCCCEEe
Q 017764 164 -EIYKLQVLSESQ 175 (366)
Q Consensus 164 -~l~~l~~L~~L~ 175 (366)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 477899999887
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=8e-09 Score=99.45 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=78.8
Q ss_pred CCEEEEEccCCCCCCcCcccc-cCCCCcCEEEccCCCCCCCCcccc-----CCCCCCCeeeccCCcCCC----CCCcccC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGF-----GELEELEVLDFGHNNFSG----PLPNDLG 142 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~~P~~l-----~~l~~L~~L~Ls~N~l~g----~lP~~l~ 142 (366)
.+++.|+|++|.++..-...+ ..+.+|++|+|++|.++..-...+ ....+|++|+|++|.|+. .+...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 478899999998864322222 235678899999998875433333 346789999999998863 2334456
Q ss_pred CCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764 143 INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 143 ~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g 183 (366)
.+++|++|+|++|.++.. +...+...++|+.|+|++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 778899999999988642 34556777889999999998863
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=1.9e-08 Score=87.10 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=86.7
Q ss_pred CCCEEEEEccCC-CCCCc----CcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CC
Q 017764 72 DGKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP 138 (366)
Q Consensus 72 ~~~v~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP 138 (366)
...++.|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 357999999999 88632 444567788999999999999743 334455668899999999999753 34
Q ss_pred cccCCCCCCcEEEc--cCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764 139 NDLGINHSLTILLL--DNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 139 ~~l~~l~~L~~L~L--~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
..+....+|++|+| ++|.+... +-..+...++|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55677789999999 88998743 3345667799999999999875
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.43 E-value=2.5e-08 Score=100.91 Aligned_cols=63 Identities=17% Similarity=0.014 Sum_probs=29.7
Q ss_pred CCCCCeeeccCCcCCC-CCCcccCCCCCCcEEEccCCCCCCC-ChhhhhCCCCCCEEeccCCCCc
Q 017764 120 LEELEVLDFGHNNFSG-PLPNDLGINHSLTILLLDNNDFVGS-LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 120 l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+++|++|+|++|++++ .++..+..+++|+.|+|++|.|++. ++..+..+++|++|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4445555555555443 1222334455555555555554432 2223344555555555555544
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=9.9e-07 Score=82.87 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=57.2
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCC-eeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE-VLDFGHNNFSGPLPNDLGINHSLTILL 151 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~-~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (366)
.+++.|+|++|+++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .+++.+ +++..-+..|.++.+|+.|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 35666666666665322334666666666666665 5434445566666666 666665 44422234566666666666
Q ss_pred ccCCCCCCCChhhhhCCCCCCEEe
Q 017764 152 LDNNDFVGSLSPEIYKLQVLSESQ 175 (366)
Q Consensus 152 L~~N~l~g~iP~~l~~l~~L~~L~ 175 (366)
|++|+++..-...|.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 666666633334566666666655
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.19 E-value=8.3e-07 Score=89.62 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=27.2
Q ss_pred CEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCC----CCccccCCCCCCCeeeccCCcC
Q 017764 74 KVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNF 133 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g----~~P~~l~~l~~L~~L~Ls~N~l 133 (366)
+++.|+|++|.+++. ++..+.++++|++|+|++|.+++ .++..+.++++|++|+|++|.+
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 455555555554433 22233344555555555555541 2222233444555555555444
No 145
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.15 E-value=5.6e-06 Score=67.32 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=66.9
Q ss_pred eeeccCCcCC-CCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCcc
Q 017764 125 VLDFGHNNFS-GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVL 202 (366)
Q Consensus 125 ~L~Ls~N~l~-g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~ 202 (366)
.++.++++++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.|. ++|....+. |....
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~------CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR------CDCRLVPLRAWLAGR 83 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB------CSGGGHHHHHHHHTS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee------ccCccHHHHHHHHhC
Confidence 5666677665 34665432 36889999999998544456788999999999999887 888876665 32211
Q ss_pred CchhhhcccccccccccccCcccCCCC
Q 017764 203 DEDTVQRRLLQINPFRNLKGRILGIAP 229 (366)
Q Consensus 203 ~~~~~~~~~~~c~~~~~~~g~~l~~~~ 229 (366)
.. ......+.|..+..++|..+....
T Consensus 84 ~~-~~~~~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 84 PE-RAPYRDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp SC-SGGGTTCBCCBSTTTTTCBGGGCC
T ss_pred cc-cccccCcEeCcChHHcCCCcccCC
Confidence 11 112356789999999999886555
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.04 E-value=2.3e-07 Score=93.66 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=64.9
Q ss_pred CCEEEEEccCCCCCCcCccccc-CCCCcCEEEcc--C----CCCCCC-----CccccCCCCCCCeeeccCCcCCCCCCcc
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILR--N----NSFSGI-----IPEGFGELEELEVLDFGHNNFSGPLPND 140 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls--~----N~l~g~-----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~ 140 (366)
.+++.|++..|.+++.....+. .+++|+.|+|+ + |.+++. ++..+..+++|+.|+|++ .+++.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4677777777777655444444 46777777777 3 444421 111244566777777755 444433333
Q ss_pred cCC-CCCCcEEEccCCCCCCCChhhh-hCCCCCCEEeccCCCCcc
Q 017764 141 LGI-NHSLTILLLDNNDFVGSLSPEI-YKLQVLSESQVDEGQLSS 183 (366)
Q Consensus 141 l~~-l~~L~~L~L~~N~l~g~iP~~l-~~l~~L~~L~l~~N~l~g 183 (366)
+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 433 5667777777777664444333 556777777777777643
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.96 E-value=1.8e-06 Score=87.12 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=77.2
Q ss_pred CCEEEEEccCCCCCCcCccccc-CCCCcCEEEccCC-CCCCC-CccccCCCCCCCeeeccCCcCCCCCCccc----CCCC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNN-SFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDL----GINH 145 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N-~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l----~~l~ 145 (366)
.+++.|+|++|.+++.....+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5789999999988876666665 6889999999988 45432 44444578899999999998876554433 3667
Q ss_pred CCcEEEccCCC--CCC-CChhhhhCCCCCCEEeccCC
Q 017764 146 SLTILLLDNND--FVG-SLSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 146 ~L~~L~L~~N~--l~g-~iP~~l~~l~~L~~L~l~~N 179 (366)
+|+.|+|++|. ++. .+...+.++++|++|++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 89999999887 221 11222355789999999888
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=2.3e-06 Score=73.81 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=73.8
Q ss_pred CcccccCCCCcCEEEccCC-CCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCC
Q 017764 89 LAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG 159 (366)
Q Consensus 89 ~p~~l~~L~~L~~L~Ls~N-~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g 159 (366)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445677899999999999 88642 345567788999999999998742 22335556889999999999984
Q ss_pred C----ChhhhhCCCCCCEEec--cCCCCcc
Q 017764 160 S----LSPEIYKLQVLSESQV--DEGQLSS 183 (366)
Q Consensus 160 ~----iP~~l~~l~~L~~L~l--~~N~l~g 183 (366)
. +...+....+|++|+| ++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3 3456777889999999 8899873
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=1.8e-06 Score=82.55 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=65.7
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC--CCCCCCeeeccC--CcCCCC-----CCccc--
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG--ELEELEVLDFGH--NNFSGP-----LPNDL-- 141 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~--~l~~L~~L~Ls~--N~l~g~-----lP~~l-- 141 (366)
.+++.|+|++|.-. .++. + .+.+|+.|+|..+.+....-..+. .+++|+.|+|+. |...|. +-..+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 57889999877311 2333 3 367888888887776543323333 677888888753 222211 11112
Q ss_pred CCCCCCcEEEccCCCCCCCChhhhh---CCCCCCEEeccCCCCcc
Q 017764 142 GINHSLTILLLDNNDFVGSLSPEIY---KLQVLSESQVDEGQLSS 183 (366)
Q Consensus 142 ~~l~~L~~L~L~~N~l~g~iP~~l~---~l~~L~~L~l~~N~l~g 183 (366)
..+++|++|+|.+|.+.......+. .+++|++|+|+.|.+.+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2467888888888877644433333 46778888888888765
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=2.3e-05 Score=73.40 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=72.8
Q ss_pred CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCc-EEEccCCCCCCCChhhhhCCCCCCEE
Q 017764 96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-ILLLDNNDFVGSLSPEIYKLQVLSES 174 (366)
Q Consensus 96 L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-~L~L~~N~l~g~iP~~l~~l~~L~~L 174 (366)
+++|+.|+|++|.++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .++|.+ +++..-+..|.++.+|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999998666678999999999999998 6633345688999999 999988 6774445789999999999
Q ss_pred eccCCCCcc
Q 017764 175 QVDEGQLSS 183 (366)
Q Consensus 175 ~l~~N~l~g 183 (366)
++++|.++.
T Consensus 303 ~l~~n~i~~ 311 (329)
T 3sb4_A 303 LATGDKITT 311 (329)
T ss_dssp EECSSCCCE
T ss_pred EeCCCccCc
Confidence 999998873
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.48 E-value=5.5e-05 Score=72.23 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=31.8
Q ss_pred CCCCCeeeccCCcCCCCCCccc---CCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764 120 LEELEVLDFGHNNFSGPLPNDL---GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (366)
Q Consensus 120 l~~L~~L~Ls~N~l~g~lP~~l---~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~ 182 (366)
+++|++|+|.+|.+.+.....+ ..+++|++|+|+.|.+.+. +...+.++++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4566666666655543222111 2345566666666655532 2223344556666666666554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.46 E-value=3.6e-05 Score=65.77 Aligned_cols=83 Identities=10% Similarity=0.012 Sum_probs=38.5
Q ss_pred CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCCcccCCC----CCCcEEEccCCC-CCCCChhhhhCCCCC
Q 017764 98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGIN----HSLTILLLDNND-FVGSLSPEIYKLQVL 171 (366)
Q Consensus 98 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~-l~g~lP~~l~~l----~~L~~L~L~~N~-l~g~iP~~l~~l~~L 171 (366)
.|+.|||+++.++..--..+.++++|++|+|+++. ++..--..+..+ ++|++|+|+++. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554443222334455555555555553 332111123332 246666666653 442212234566666
Q ss_pred CEEeccCCC
Q 017764 172 SESQVDEGQ 180 (366)
Q Consensus 172 ~~L~l~~N~ 180 (366)
++|++++..
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666553
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.33 E-value=4.8e-05 Score=65.00 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC-CCCCCccccCCC----CCCCeeeccCCc-CCCCCCcccCCCCC
Q 017764 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGEL----EELEVLDFGHNN-FSGPLPNDLGINHS 146 (366)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~~P~~l~~l----~~L~~L~Ls~N~-l~g~lP~~l~~l~~ 146 (366)
-+++.|||+++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|++|+|+++. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999875444557899999999999985 665433445554 379999999975 66332235778999
Q ss_pred CcEEEccCCC
Q 017764 147 LTILLLDNND 156 (366)
Q Consensus 147 L~~L~L~~N~ 156 (366)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.27 E-value=0.00047 Score=66.62 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=49.4
Q ss_pred ccccCCCCcCEEEccCCCCC-----CCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhh
Q 017764 91 PEIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI 165 (366)
Q Consensus 91 ~~l~~L~~L~~L~Ls~N~l~-----g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l 165 (366)
..|.++.+|+.+++.+|.+. ..-...|.++.+|+.++|.+ +++-.-...|.++.+|+.++|..| ++..-...|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 34566666666666665553 22334566666666666663 344222234566666666666443 442233456
Q ss_pred hCCCCCCEEeccCCCCc
Q 017764 166 YKLQVLSESQVDEGQLS 182 (366)
Q Consensus 166 ~~l~~L~~L~l~~N~l~ 182 (366)
.++ +|+.+++.+|.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SSS-CCCEEEECCSSCC
T ss_pred CCC-CCCEEEEcCCCCc
Confidence 666 6777777666553
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0018 Score=52.23 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=25.5
Q ss_pred EEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764 77 NLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (366)
Q Consensus 77 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l 133 (366)
.++.++++|+ ..+|..+. .+|++|+|++|.|+..-+..|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 23443322 2455555555555533333344444444444444443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.81 E-value=0.0019 Score=62.30 Aligned_cols=106 Identities=6% Similarity=0.006 Sum_probs=80.0
Q ss_pred CCEEEEEccCCCCC-----CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764 73 GKVVNLNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (366)
Q Consensus 73 ~~v~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (366)
.+++.|+|.+|.+. ..-...|.++.+|+.++|. +.++-.-...|.++.+|+.++|..| ++..-...|.++ +|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 36788888877654 1233468899999999999 4577555678999999999999765 653334568888 99
Q ss_pred cEEEccCCCCCCCChhhhhCCC-CCCEEeccCCCC
Q 017764 148 TILLLDNNDFVGSLSPEIYKLQ-VLSESQVDEGQL 181 (366)
Q Consensus 148 ~~L~L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l 181 (366)
+.+++.+|.+.......|..++ +++.|++-.|.+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 9999999988755555677774 788888877654
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.00033 Score=60.90 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCEEEEEccCC-CCCC----cCcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CC
Q 017764 72 DGKVVNLNLKDL-CLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP 138 (366)
Q Consensus 72 ~~~v~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP 138 (366)
+..++.|+|++| .|.. .+-..+..-+.|+.|+|++|.|... +-..+..-+.|++|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457899999985 6652 2334566678899999999998733 223344457899999999998742 12
Q ss_pred cccCCCCCCcEEEccCCC---CCC----CChhhhhCCCCCCEEeccCCCC
Q 017764 139 NDLGINHSLTILLLDNND---FVG----SLSPEIYKLQVLSESQVDEGQL 181 (366)
Q Consensus 139 ~~l~~l~~L~~L~L~~N~---l~g----~iP~~l~~l~~L~~L~l~~N~l 181 (366)
+.+..-+.|+.|+|++|. +.. .+-..+..-+.|+.|+++.|..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 235555679999998653 321 1334566678899999987754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.65 E-value=0.045 Score=52.10 Aligned_cols=85 Identities=8% Similarity=0.113 Sum_probs=43.6
Q ss_pred ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCC
Q 017764 93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172 (366)
Q Consensus 93 l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~ 172 (366)
+.++..|+.+++. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++..-...|.++.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 4445555555554 2333222345556666666666543 33112234556666666666433 4422233566666666
Q ss_pred EEeccCCC
Q 017764 173 ESQVDEGQ 180 (366)
Q Consensus 173 ~L~l~~N~ 180 (366)
.+++.+|.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 66666553
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.65 E-value=0.0038 Score=54.14 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=63.3
Q ss_pred cccCCCCcCEEEccCC-CCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCC--
Q 017764 92 EIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGS-- 160 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N-~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~-- 160 (366)
.+.+-+.|++|+|++| .+... +-..+..-+.|+.|+|++|+|... +-..+..-+.|+.|+|+.|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999986 77532 334566678899999999999732 122334457899999999999732
Q ss_pred --ChhhhhCCCCCCEEeccCC
Q 017764 161 --LSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 161 --iP~~l~~l~~L~~L~l~~N 179 (366)
+-+.+..-..|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2234556678999999875
No 160
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.61 E-value=0.0043 Score=39.77 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCceEEEehhhHHHHHHHHHHH
Q 017764 307 SKHIAILGGVIGGAILLVATVG 328 (366)
Q Consensus 307 ~~~~~i~~~vv~g~~v~~~~~~ 328 (366)
+.+.+|+++||+|+++++++++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHH
Confidence 3455699999999777666643
No 161
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.52 E-value=0.0031 Score=40.33 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCCceEEEehhhHHHHHHHHHHH-HHhhhc
Q 017764 306 SSKHIAILGGVIGGAILLVATVG-IYLCRC 334 (366)
Q Consensus 306 ~~~~~~i~~~vv~g~~v~~~~~~-~~~~~~ 334 (366)
++.+.+|+++||+|+++++++++ +++++|
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 44566799999999777666633 333433
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.99 E-value=0.048 Score=51.42 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=54.8
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEEEc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLL 152 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L~L 152 (366)
.++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .++ ..|.++.+|+.+++
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEE
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccc
Confidence 3455555433 22122234556667777776654 33233345556666776666543 33 222 34556667777777
Q ss_pred cCCCCCCCChhhhhCCCCCCEEeccCC
Q 017764 153 DNNDFVGSLSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N 179 (366)
.++.++..-...|.++.+|+.+.|..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc
Confidence 666665222345666667777766543
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.71 E-value=0.041 Score=52.37 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=63.7
Q ss_pred EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEEEcc
Q 017764 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLD 153 (366)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L~L~ 153 (366)
++.+.+. +.+...-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++ .|. ..|.++.+|+.+++.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence 4444443 2333222335788999999999865 55344567999999999999765 55 454 468999999999999
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCCCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEGQL 181 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l 181 (366)
+|... -..+....+|+.+.+..|.+
T Consensus 366 ~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 366 GSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SCHHH---HHTCBCCCCC----------
T ss_pred Cceee---hhhhhccCCCCEEEeCCCCE
Confidence 88643 24567778899988877654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.31 E-value=0.047 Score=51.92 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=64.4
Q ss_pred cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L 171 (366)
.+..+.+|+.+.+..+ ++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.++|..| ++..-...|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4778889999999765 55344567889999999999765 55222356889999999999876 653334578899999
Q ss_pred CEEeccCC
Q 017764 172 SESQVDEG 179 (366)
Q Consensus 172 ~~L~l~~N 179 (366)
+.+++..|
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 99998654
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.99 E-value=0.075 Score=50.53 Aligned_cols=100 Identities=10% Similarity=-0.023 Sum_probs=69.3
Q ss_pred CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (366)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 153 (366)
.++.+.+..+... .-...+.++..|+.+.+..+.+. ...|..+.+|+.+.+..+ ++..-...|.++.+|+.++|.
T Consensus 254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 3445555444322 22345777888998888776543 246778999999999875 552223468899999999997
Q ss_pred CCCCCCCChhhhhCCCCCCEEeccCC
Q 017764 154 NNDFVGSLSPEIYKLQVLSESQVDEG 179 (366)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~l~~N 179 (366)
++ ++..-...|.++.+|+.+++..|
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc
Confidence 54 65233457889999999999776
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.94 E-value=0.32 Score=45.57 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=45.2
Q ss_pred cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171 (366)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L 171 (366)
.+.....|+.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|.++.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444556666665443 22222344556666666666554 33122234555666666666443 331222345566666
Q ss_pred CEEeccCCCCc
Q 017764 172 SESQVDEGQLS 182 (366)
Q Consensus 172 ~~L~l~~N~l~ 182 (366)
+.+.+.+|.++
T Consensus 289 ~~i~l~~~~i~ 299 (379)
T 4h09_A 289 TKVVMDNSAIE 299 (379)
T ss_dssp CEEEECCTTCC
T ss_pred ccccccccccc
Confidence 66666655544
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=90.03 E-value=0.11 Score=32.19 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.8
Q ss_pred EEEehhhHH
Q 017764 311 AILGGVIGG 319 (366)
Q Consensus 311 ~i~~~vv~g 319 (366)
+|.++||+.
T Consensus 12 aIAGiVvG~ 20 (38)
T 2k1k_A 12 EIVAVIFGL 20 (38)
T ss_dssp HHHHHHHHH
T ss_pred ceeeeehHH
Confidence 444444443
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=89.61 E-value=0.083 Score=33.20 Aligned_cols=16 Identities=44% Similarity=0.924 Sum_probs=11.2
Q ss_pred ceEEEehhhHHHHHHH
Q 017764 309 HIAILGGVIGGAILLV 324 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~ 324 (366)
..+|++++++|+++++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 3467778888877655
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=89.49 E-value=0.078 Score=33.79 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=13.6
Q ss_pred CceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764 308 KHIAILGGVIGGAILLVATVGIYLCRC 334 (366)
Q Consensus 308 ~~~~i~~~vv~g~~v~~~~~~~~~~~~ 334 (366)
....|+++||+-++++++.++++++.|
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhee
Confidence 344577777773333333344444444
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=79.86 E-value=0.062 Score=32.42 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=13.4
Q ss_pred ceEEEehhhHHHHHHHHH-HHHHhhhcc
Q 017764 309 HIAILGGVIGGAILLVAT-VGIYLCRCN 335 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~-~~~~~~~~~ 335 (366)
...|+++|++ +++++++ +.+.++.|+
T Consensus 7 ~~sIaagVvg-lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 7 VTFIIATVVG-VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHH-HHHHHHHTTTTTHHHHH
T ss_pred CcEeHHHHHH-HHHHHHHHHHhheEEee
Confidence 3457777777 4444433 444444443
No 171
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=64.59 E-value=3.3 Score=24.54 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=8.3
Q ss_pred ehhhHHHHHHHHHHHHHhhh
Q 017764 314 GGVIGGAILLVATVGIYLCR 333 (366)
Q Consensus 314 ~~vv~g~~v~~~~~~~~~~~ 333 (366)
+|+|.|.++..+++++.+++
T Consensus 10 aGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHHHHHhh
Confidence 34444444444443433343
No 172
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.67 E-value=3.6 Score=29.68 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=7.5
Q ss_pred eEEEehhhHHHHHH
Q 017764 310 IAILGGVIGGAILL 323 (366)
Q Consensus 310 ~~i~~~vv~g~~v~ 323 (366)
.+|++||++|++++
T Consensus 11 ~~Iv~gvi~gilli 24 (79)
T 2knc_B 11 LVVLLSVMGAILLI 24 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 34556666664433
No 173
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.71 E-value=6.4 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=6.7
Q ss_pred eEEEehhhHHHH
Q 017764 310 IAILGGVIGGAI 321 (366)
Q Consensus 310 ~~i~~~vv~g~~ 321 (366)
.+|+.|+++|++
T Consensus 10 ~~Iv~gvi~~iv 21 (43)
T 2k9j_B 10 LVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 355566666633
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.35 E-value=10 Score=27.28 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=11.8
Q ss_pred EEehhhHHHHHHHHHHHHHh
Q 017764 312 ILGGVIGGAILLVATVGIYL 331 (366)
Q Consensus 312 i~~~vv~g~~v~~~~~~~~~ 331 (366)
=+++||+|+++.++++.+++
T Consensus 9 n~~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 45566677666666644443
No 175
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=37.31 E-value=7.7 Score=25.66 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.1
Q ss_pred ceEEEehhhHHHHHHHHH
Q 017764 309 HIAILGGVIGGAILLVAT 326 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~ 326 (366)
...|++++++|.++++++
T Consensus 9 ~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344566666765555544
No 176
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.43 E-value=14 Score=23.05 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=9.7
Q ss_pred ceEEEehhhHHHHHHHHH
Q 017764 309 HIAILGGVIGGAILLVAT 326 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~ 326 (366)
...|++++++|.++++++
T Consensus 10 ~wiIi~s~l~GLllL~li 27 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTIL 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344556666665544444
No 177
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.04 E-value=13 Score=24.58 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=10.2
Q ss_pred ceEEEehhhHHHHHHHHH
Q 017764 309 HIAILGGVIGGAILLVAT 326 (366)
Q Consensus 309 ~~~i~~~vv~g~~v~~~~ 326 (366)
...|++++++|.++++++
T Consensus 12 ~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445566666765555544
No 178
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=35.20 E-value=12 Score=22.90 Aligned_cols=7 Identities=0% Similarity=0.629 Sum_probs=2.7
Q ss_pred EEehhhH
Q 017764 312 ILGGVIG 318 (366)
Q Consensus 312 i~~~vv~ 318 (366)
+++++++
T Consensus 10 vl~avla 16 (39)
T 2l6w_A 10 VISAILA 16 (39)
Confidence 3334333
No 179
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=28.19 E-value=23 Score=21.81 Aligned_cols=17 Identities=41% Similarity=0.827 Sum_probs=9.7
Q ss_pred ehhhHHHHHHHHHHHHH
Q 017764 314 GGVIGGAILLVATVGIY 330 (366)
Q Consensus 314 ~~vv~g~~v~~~~~~~~ 330 (366)
++.|+|++++++++.++
T Consensus 23 ~~~IVGaLvil~VAGLi 39 (46)
T 1pfi_A 23 GGYIVGALVILAVAGLI 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665444
No 180
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=28.18 E-value=12 Score=26.92 Aligned_cols=29 Identities=38% Similarity=0.292 Sum_probs=17.3
Q ss_pred eEEEehhhHHHHHHHHHHHHHhhhccccc
Q 017764 310 IAILGGVIGGAILLVATVGIYLCRCNKVT 338 (366)
Q Consensus 310 ~~i~~~vv~g~~v~~~~~~~~~~~~~k~~ 338 (366)
.+|+-|+-.|+.++++++.+.+.+++|.+
T Consensus 21 ~~I~~G~~iGAs~llliil~lltkkrrsp 49 (80)
T 2k9p_A 21 QAILFGVRSGAAALTLIVVWITSRSRKTP 49 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence 34555666666666666666666655543
No 181
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=33.33 E-value=13 Score=23.21 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=6.9
Q ss_pred EEEehhhHHHHHHHHH
Q 017764 311 AILGGVIGGAILLVAT 326 (366)
Q Consensus 311 ~i~~~vv~g~~v~~~~ 326 (366)
++++-.++|+++..++
T Consensus 18 a~iGL~v~gVai~~vI 33 (43)
T 2llm_A 18 AIIGLMVGGVVIATVI 33 (43)
Confidence 3444444444444444
No 182
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.80 E-value=1.2e+02 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=20.3
Q ss_pred cccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764 115 EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (366)
Q Consensus 115 ~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 154 (366)
..|.++.+|+.+.|..+ ++..-...|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34555666666665543 2212223456666666666654
No 183
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.43 E-value=40 Score=24.69 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhhc
Q 017764 321 ILLVATVGIYLCRC 334 (366)
Q Consensus 321 ~v~~~~~~~~~~~~ 334 (366)
+++++++++++++|
T Consensus 77 iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 77 ICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444444
No 184
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=26.07 E-value=14 Score=33.67 Aligned_cols=12 Identities=17% Similarity=-0.086 Sum_probs=0.0
Q ss_pred EEEehhhHHHHH
Q 017764 311 AILGGVIGGAIL 322 (366)
Q Consensus 311 ~i~~~vv~g~~v 322 (366)
.|++|||+++++
T Consensus 285 ~i~~~vi~~l~l 296 (315)
T 1cd1_A 285 LIVFIVLIMLVV 296 (315)
T ss_dssp ------------
T ss_pred eeehhHHHHHHH
Confidence 455555544333
No 185
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=23.24 E-value=17 Score=35.44 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred cceeeeeeeccCCcccccc
Q 017764 337 VTIISKVIYGANRSIENSQ 355 (366)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~ 355 (366)
-+.++++.||-..+.+.+|
T Consensus 545 dk~~~~~~y~~~~~r~d~~ 563 (581)
T 2j5l_A 545 DKMDQPQHYGKSTSRNDEM 563 (581)
T ss_dssp -------------------
T ss_pred hhhcchhccCCCCcchhhc
Confidence 3567888898866555543
No 186
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=22.24 E-value=57 Score=19.25 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHH-HHHHhhhc
Q 017764 315 GVIGGAILLVAT-VGIYLCRC 334 (366)
Q Consensus 315 ~vv~g~~v~~~~-~~~~~~~~ 334 (366)
-+|+|.+|++++ -.-+++||
T Consensus 11 t~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEc
Confidence 345555555444 33555665
No 187
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=21.45 E-value=53 Score=25.38 Aligned_cols=13 Identities=8% Similarity=-0.039 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhc
Q 017764 322 LLVATVGIYLCRC 334 (366)
Q Consensus 322 v~~~~~~~~~~~~ 334 (366)
++++++++++..|
T Consensus 106 v~iii~iIi~~~c 118 (119)
T 2kog_A 106 CAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhee
Confidence 3333333443444
No 188
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.11 E-value=1.8e+02 Score=21.23 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764 84 CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (366)
Q Consensus 84 ~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N 131 (366)
.++..-...|.++++|+.+.|..+ ++..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344333345788889999988765 33244467889999999988764
Done!