Query 017765
Match_columns 366
No_of_seqs 302 out of 1613
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 8.6E-74 1.9E-78 507.1 19.3 313 53-366 35-352 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 3.7E-68 8E-73 463.8 21.9 314 52-366 25-346 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 6.4E-68 1.4E-72 462.5 22.3 314 53-366 39-361 (421)
4 KOG0138 Glutaryl-CoA dehydroge 100.0 2.4E-67 5.2E-72 457.6 25.9 341 25-365 25-367 (432)
5 PLN02526 acyl-coenzyme A oxida 100.0 8.4E-61 1.8E-65 463.6 37.4 337 30-366 4-340 (412)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.5E-59 3.2E-64 452.0 36.7 316 50-366 8-324 (386)
7 TIGR03203 pimD_small pimeloyl- 100.0 9.3E-58 2E-62 437.3 32.8 309 53-366 2-320 (378)
8 PLN02519 isovaleryl-CoA dehydr 100.0 1.4E-56 3.1E-61 433.3 35.3 314 52-365 23-343 (404)
9 PRK03354 crotonobetainyl-CoA d 100.0 1.6E-56 3.4E-61 429.9 35.1 313 51-366 1-319 (380)
10 cd01157 MCAD Medium chain acyl 100.0 1.4E-56 3E-61 430.4 33.9 311 55-366 1-319 (378)
11 cd01156 IVD Isovaleryl-CoA deh 100.0 2.5E-56 5.5E-61 428.3 35.1 311 55-365 2-317 (376)
12 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.9E-56 4.2E-61 428.4 33.8 310 55-366 1-316 (372)
13 PRK12341 putative acyl-CoA deh 100.0 3.1E-56 6.8E-61 428.1 34.8 312 51-366 1-320 (381)
14 PLN02636 acyl-coenzyme A oxida 100.0 1.3E-56 2.8E-61 452.6 32.5 357 2-366 9-427 (686)
15 cd01162 IBD Isobutyryl-CoA deh 100.0 5.7E-56 1.2E-60 425.6 34.7 310 55-365 1-315 (375)
16 cd01160 LCAD Long chain acyl-C 100.0 5.6E-56 1.2E-60 425.4 34.1 308 57-365 1-314 (372)
17 PTZ00461 isovaleryl-CoA dehydr 100.0 5.8E-56 1.3E-60 429.9 34.1 311 53-365 35-348 (410)
18 cd01161 VLCAD Very long chain 100.0 1.2E-55 2.5E-60 427.7 33.2 316 48-366 20-348 (409)
19 PRK09463 fadE acyl-CoA dehydro 100.0 4.6E-55 1E-59 442.2 35.2 306 55-366 79-412 (777)
20 TIGR03204 pimC_large pimeloyl- 100.0 5E-54 1.1E-58 414.0 34.4 308 53-366 2-322 (395)
21 PLN02312 acyl-CoA oxidase 100.0 1.2E-54 2.5E-59 437.4 31.0 363 1-366 1-429 (680)
22 PRK13026 acyl-CoA dehydrogenas 100.0 6.3E-54 1.4E-58 432.4 34.4 306 55-366 78-411 (774)
23 cd01158 SCAD_SBCAD Short chain 100.0 9.7E-54 2.1E-58 410.0 33.1 308 58-365 2-314 (373)
24 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.7E-53 5.9E-58 409.4 31.7 308 59-366 3-336 (394)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 1E-51 2.2E-56 398.7 31.4 314 53-366 3-330 (393)
26 cd01153 ACAD_fadE5 Putative ac 100.0 3.5E-50 7.6E-55 389.1 33.1 288 63-355 2-324 (407)
27 PLN02876 acyl-CoA dehydrogenas 100.0 3.3E-50 7.1E-55 418.6 33.5 314 53-366 400-760 (822)
28 cd01152 ACAD_fadE6_17_26 Putat 100.0 9.4E-50 2E-54 383.1 27.5 302 58-366 2-314 (380)
29 cd01163 DszC Dibenzothiophene 100.0 2.6E-49 5.6E-54 379.8 28.8 284 65-354 2-292 (377)
30 PTZ00456 acyl-CoA dehydrogenas 100.0 8E-48 1.7E-52 385.4 32.9 295 57-355 58-397 (622)
31 KOG0137 Very-long-chain acyl-C 100.0 3.6E-49 7.7E-54 371.7 19.9 320 47-366 68-402 (634)
32 cd01154 AidB Proteins involved 100.0 5.9E-46 1.3E-50 360.1 29.7 279 66-354 37-340 (418)
33 PTZ00457 acyl-CoA dehydrogenas 100.0 3.7E-43 8E-48 342.4 31.6 246 94-366 58-318 (520)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 9.3E-43 2E-47 328.1 30.3 265 58-365 2-272 (327)
35 PTZ00460 acyl-CoA dehydrogenas 100.0 7.3E-44 1.6E-48 357.8 23.5 226 129-354 88-349 (646)
36 cd01150 AXO Peroxisomal acyl-C 100.0 2.4E-43 5.2E-48 354.4 22.7 234 114-347 80-355 (610)
37 cd01159 NcnH Naphthocyclinone 100.0 1.1E-42 2.3E-47 333.1 24.1 272 66-354 3-291 (370)
38 PRK11561 isovaleryl CoA dehydr 100.0 1.9E-41 4.1E-46 332.6 29.4 256 90-355 90-366 (538)
39 PLN02443 acyl-coenzyme A oxida 100.0 1.9E-40 4E-45 333.8 23.8 218 136-353 99-357 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 6.7E-39 1.5E-43 275.8 16.5 273 93-366 34-324 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 4.7E-38 1E-42 294.1 17.8 304 47-353 31-383 (661)
42 KOG0136 Acyl-CoA oxidase [Lipi 99.9 7.3E-26 1.6E-30 217.1 18.5 222 132-353 107-365 (670)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.9 9.6E-24 2.1E-28 205.6 20.8 212 148-366 119-368 (477)
44 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 2.2E-19 4.8E-24 142.3 10.0 112 56-167 1-113 (113)
45 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 1.6E-16 3.5E-21 107.0 6.8 52 171-222 1-52 (52)
46 PF00441 Acyl-CoA_dh_1: Acyl-C 99.3 4.3E-12 9.4E-17 105.4 9.0 92 275-366 2-93 (150)
47 TIGR02310 HpaB-2 4-hydroxyphen 99.0 1.8E-08 3.9E-13 98.7 18.6 191 154-349 136-357 (519)
48 COG2368 Aromatic ring hydroxyl 99.0 1.9E-08 4.1E-13 95.5 16.7 198 150-352 125-356 (493)
49 PF11794 HpaB_N: 4-hydroxyphen 98.5 1.1E-06 2.4E-11 79.0 11.4 118 154-271 123-263 (264)
50 PF08028 Acyl-CoA_dh_2: Acyl-C 98.4 2.2E-06 4.8E-11 69.8 9.4 64 289-352 1-66 (134)
51 PF14749 Acyl-CoA_ox_N: Acyl-c 94.7 0.024 5.1E-07 45.4 2.5 34 136-169 92-125 (125)
52 PTZ00457 acyl-CoA dehydrogenas 74.3 12 0.00026 37.6 7.6 53 303-357 418-470 (520)
53 PF03241 HpaB: 4-hydroxyphenyl 60.8 70 0.0015 27.8 8.8 31 320-350 44-74 (205)
54 KOG0137 Very-long-chain acyl-C 47.3 1.2E+02 0.0025 30.8 8.6 65 291-357 510-574 (634)
55 PF01726 LexA_DNA_bind: LexA D 47.1 67 0.0015 22.2 5.2 50 54-103 3-58 (65)
56 PF12584 TRAPPC10: Trafficking 26.9 1.2E+02 0.0026 24.8 4.5 13 193-205 67-79 (147)
57 PF13051 DUF3912: Protein of u 26.7 1.1E+02 0.0024 20.5 3.3 36 197-232 2-37 (68)
58 PF15631 Imm-NTF2-2: NTF2 fold 22.6 95 0.002 21.7 2.6 16 189-204 25-40 (66)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-74 Score=507.09 Aligned_cols=313 Identities=33% Similarity=0.522 Sum_probs=303.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCc
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s 131 (366)
..|++.+..+++.+++|+++.+.|.++++|+++.+|..+++.+.++|++++.+ ++|||.|.++..+..++||+++.|+|
T Consensus 35 ~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~s 114 (398)
T KOG0139|consen 35 QILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDAS 114 (398)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCcc
Confidence 45789999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCC
Q 017765 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~ 211 (366)
++.++.+|+.+...+|..||+++||++|+|.+ .|+.++|||+|||+.|||+..+.|+|+++||.|+|||+|.||||+..
T Consensus 115 v~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~ 193 (398)
T KOG0139|consen 115 VGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGE 193 (398)
T ss_pred ceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcc
Confidence 99999999999999999999999999888865 68889999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHH
Q 017765 212 ADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVS 287 (366)
Q Consensus 212 Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~ 287 (366)
|+|++|+|.++.. .|+++|+||+++||+++.+..+|+|||++.++.++|+||+||.+++||+. .|+++.+..++.+
T Consensus 194 A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~g 273 (398)
T KOG0139|consen 194 ADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAG 273 (398)
T ss_pred cceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCcc
Confidence 9999999998654 78999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 288 RVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 288 r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
|+.++|+++|+++.|+|.++.|+++|.|||++|.+||.+||+||+|.+++|++|+++|+++++-|+|.+-..+++|||+
T Consensus 274 RIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl 352 (398)
T KOG0139|consen 274 RIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKL 352 (398)
T ss_pred ceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.7e-68 Score=463.75 Aligned_cols=314 Identities=30% Similarity=0.426 Sum_probs=303.4
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCC
Q 017765 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (366)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 130 (366)
++.|+++|.++++.+++|.++++.|.+.++|+.++||.+++++..++||....+ ++|||+|++..+.+.+.|+|+.+|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 578999999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCC
Q 017765 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (366)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~ 210 (366)
++...+..|+ ++.++|..+|+++||++||++++....++++|+|||++|||+.++.|+|++.||.|+|||+|.||||+.
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9998887776 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC------CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHH
Q 017765 211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (366)
Q Consensus 211 ~Ad~~~v~a~~~~~------~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~ 283 (366)
+|+|+.|++|++++ .+++.|+|+.++||++.++.+.+||.|.+++-.|+|+||+||.+|+|+.+ .||+..+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999999764 56899999999999999999999999999999999999999999999886 689999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccc
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~ 363 (366)
++.+|..+|+.++|+++++++.+.+|+.+|++||.||+++|.+|..||||+++++.+|++++++++.+|++.+....++|
T Consensus 264 fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSi 343 (408)
T KOG0140|consen 264 FDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASI 343 (408)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred ccC
Q 017765 364 GKV 366 (366)
Q Consensus 364 aK~ 366 (366)
||+
T Consensus 344 AK~ 346 (408)
T KOG0140|consen 344 AKL 346 (408)
T ss_pred HHH
Confidence 984
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-68 Score=462.55 Aligned_cols=314 Identities=28% Similarity=0.435 Sum_probs=300.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC--HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
+-|+++|..+++.+++|+++++.|.+.++|..++|+ +++|+++.++|++|++. ++|||.|+++...+.++||++|..
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999994 78999999999999987 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
.+.++.++.|+++++.-|...|+++||++|||.+.+|+-++++|||||++|||+.++.+.|++++++|+|||+|.||||+
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHH
Q 017765 210 TFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~ 283 (366)
+.||.++|+|+++.. .|+++|+|+.+.||++..+..+|+||||++++++.|+|++||++++|+.. .|+..++..
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsg 278 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSG 278 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecC
Confidence 999999999998642 78999999999999999999999999999999999999999999999986 577778899
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccc
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~ 363 (366)
++..|+.+|+..+|++++++|.+..|+++|++||++|+.||.+|++||||++.+.+.|+.+|.+++..|+|..+...+++
T Consensus 279 Ld~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag 358 (421)
T KOG0141|consen 279 LDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAG 358 (421)
T ss_pred CChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777777
Q ss_pred ccC
Q 017765 364 GKV 366 (366)
Q Consensus 364 aK~ 366 (366)
+|+
T Consensus 359 ~il 361 (421)
T KOG0141|consen 359 VIL 361 (421)
T ss_pred hhh
Confidence 653
No 4
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-67 Score=457.55 Aligned_cols=341 Identities=40% Similarity=0.574 Sum_probs=325.4
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCC
Q 017765 25 ALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGT 104 (366)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~ 104 (366)
.......+++....+++|+-+.|++.++..|++|+..+++.+|+++++++.|+..++++...||++++.+|..+|++|..
T Consensus 25 p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~t 104 (432)
T KOG0138|consen 25 PTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPT 104 (432)
T ss_pred hhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCc
Confidence 33344445556666778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcC
Q 017765 105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184 (366)
Q Consensus 105 ~~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~ 184 (366)
++.||..|.+...+..+..|+.|.|.+....+.+|+++++.+|..+|+++||++|||.+++|+.++||++|||++|||+.
T Consensus 105 ikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdps 184 (432)
T KOG0138|consen 105 IKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPS 184 (432)
T ss_pred ccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCE--EEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcc
Q 017765 185 ALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKK 262 (366)
Q Consensus 185 ~~~t~A~~~~~g--~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~ 262 (366)
+++|+|+++..+ |.|||+|+||+|++.||+++|+||.+.++.+.-|+|+++.+|++..++..|+++|.+.++.|-+||
T Consensus 185 gmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~ 264 (432)
T KOG0138|consen 185 GMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDG 264 (432)
T ss_pred cccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecC
Confidence 999999998877 999999999999999999999999986788999999999999999999999999999999999999
Q ss_pred eeeCCCCcccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHH
Q 017765 263 VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342 (366)
Q Consensus 263 v~vp~~~~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~ 342 (366)
|+||++++|++..++......++..|+.+|+..+|+++.|++.+.+|+.+|+|||+|++.+|.+|.+|++|+.++...-.
T Consensus 265 V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~ 344 (432)
T KOG0138|consen 265 VEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQ 344 (432)
T ss_pred CcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhcccccc
Q 017765 343 VGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 343 ~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
++++..++.|+|+.++.++++.|
T Consensus 345 ~clrl~rLkd~g~~tp~qiSl~K 367 (432)
T KOG0138|consen 345 ACLRLGRLKDQGKATPEQISLLK 367 (432)
T ss_pred HHHHhhhhhhcccCChhhhHHHh
Confidence 99999999999999999988877
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=8.4e-61 Score=463.55 Aligned_cols=337 Identities=88% Similarity=1.388 Sum_probs=311.7
Q ss_pred ccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCC
Q 017765 30 VAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYG 109 (366)
Q Consensus 30 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~G 109 (366)
..+++.++.+-|||..++.+.|+..++++|+.+++.+++|+++++.|...+.+....+|+++|++|.++||+++.+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~G 83 (412)
T PLN02526 4 VAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYG 83 (412)
T ss_pred cccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccC
Confidence 45778888888999999999999999999999999999999999988877777778899999999999999998779999
Q ss_pred CCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceE
Q 017765 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTT 189 (366)
Q Consensus 110 G~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~ 189 (366)
|.|+++.+.+.++|+++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||+.|||+..+.|+
T Consensus 84 G~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~ 163 (412)
T PLN02526 84 CPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTT 163 (412)
T ss_pred CCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeE
Confidence 99999999999999999999988777777776677789999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCC
Q 017765 190 ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269 (366)
Q Consensus 190 A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~ 269 (366)
|++++|||+|||+|.||+|+..|||++|++++++++++++|+||.+.|||++.+.|+++|+|++++++|+|+||+||+++
T Consensus 164 a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~ 243 (412)
T PLN02526 164 ATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDED 243 (412)
T ss_pred EEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHH
Confidence 99999999999999999999999999999998655678899999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 270 RLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCK 349 (366)
Q Consensus 270 ~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~ 349 (366)
+++...++......+...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++
T Consensus 244 ~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~ 323 (412)
T PLN02526 244 RLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCK 323 (412)
T ss_pred hCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99776677777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChhccccccC
Q 017765 350 LYEKGAMTPGHASLGKV 366 (366)
Q Consensus 350 ~~d~g~~~~~~a~~aK~ 366 (366)
.+|.+......++++|+
T Consensus 324 ~~d~~~~~~~~~~~aK~ 340 (412)
T PLN02526 324 LYESGKMTPGHASLGKA 340 (412)
T ss_pred HHHCCCCChHHHHHHHH
Confidence 99987655556777773
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.5e-59 Score=451.97 Aligned_cols=316 Identities=42% Similarity=0.708 Sum_probs=295.5
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
.|++.++++|+++++.+++|+++++.|...+.++...+|.++|++|.+.||+++ + ++|||.|+++.+...++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~ 86 (386)
T cd01151 8 NLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERV 86 (386)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhh
Confidence 377789999999999999999999999888888888899999999999999999 8 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecC
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 208 (366)
|.++++.+.+|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+.++.|+|++++|||+|||+|.||||
T Consensus 87 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 166 (386)
T cd01151 87 DSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITN 166 (386)
T ss_pred ChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecC
Confidence 99988777777666667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHHHHHHHHh
Q 017765 209 STFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSR 288 (366)
Q Consensus 209 a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~l~~~r 288 (366)
+..|||++|++++++++++.+|+||++.||+++.+.|+++|++++++++|.|+||+||++++++...++......+...|
T Consensus 167 ~~~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r 246 (386)
T cd01151 167 SPIADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNAR 246 (386)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHH
Confidence 99999999999987656788999999999999999999999999999999999999999999987777777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|++.....+++++|+
T Consensus 247 ~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~ 324 (386)
T cd01151 247 YGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKR 324 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987766667777773
No 7
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.3e-58 Score=437.28 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=274.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
+.++++|+++++.+++|+++++.+.... .++.+.||.++|++|.++||+++.+ ++|||.|+++.+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4578999999999999999988765432 3566789999999999999999977 999999999999999999999987
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
.+.+ .+ .+..++..++..+|+++||++|||++.+|+.++++++|||++|||...+.|+|++++|+|+|||+|.||+|+
T Consensus 82 ~~~~-~~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEP-YL-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchH-HH-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 5433 22 222245567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC----CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHH
Q 017765 210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~----~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l 284 (366)
..||+++|++++++ ..++++|+||.+.||+++.+.+.++|+ ++++|+||||+||++++++.. +++......+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999853 257899999999999999877777665 468999999999999999875 6788888999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHAS 362 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~--~~~~~a~ 362 (366)
+..|+.+++.++|+++++++.+++|+++|+|||+||++||.|||+|++|.++++++|++++++++..+.+. +...+++
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a 316 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIA 316 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887643 3345778
Q ss_pred cccC
Q 017765 363 LGKV 366 (366)
Q Consensus 363 ~aK~ 366 (366)
++|+
T Consensus 317 ~aK~ 320 (378)
T TIGR03203 317 AAKV 320 (378)
T ss_pred HHHH
Confidence 8884
No 8
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.4e-56 Score=433.35 Aligned_cols=314 Identities=26% Similarity=0.454 Sum_probs=289.2
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--HHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
++.+++++.++++.+++|+++++.|...+.|+.+.+|.+ +|++|++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 356789999999999999999999988888888888876 799999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecC
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 208 (366)
|+++++.+.+|..+....|..+|+++||++|||++.+|+.++|+++|||++|||...+.|+|++++|||+|||+|+|+||
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999888777766667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHH
Q 017765 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (366)
Q Consensus 209 a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l 284 (366)
+..||+++|+++++++ .++++|+||.+.||+++.+.|+++|++++++++|.|+||+||++++++.. .++......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 9999999999997642 46889999999999999999999999999999999999999999999875 5776677788
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~a 364 (366)
...|+.+++.++|+++++++.+++|+++|.+||+||+++|.+|++|++|.++++++|++++++++.++++.....+.+.+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999876555555555
Q ss_pred c
Q 017765 365 K 365 (366)
Q Consensus 365 K 365 (366)
|
T Consensus 343 k 343 (404)
T PLN02519 343 I 343 (404)
T ss_pred H
Confidence 5
No 9
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-56 Score=429.92 Aligned_cols=313 Identities=25% Similarity=0.346 Sum_probs=282.2
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
|++.+|++|+++++.+++|+++++ .+...+.++.+.||.++|++|++.||+++.+ ++|||.|+++.+++.++++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 456799999999999999999875 4556677888899999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecC
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 208 (366)
|+|+++.+.++. ....+..+|+++||++|||++.+|+.+.|+++|||+.|||...+.|+|++++|||+|||+|+||||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 998876554442 345688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHH
Q 017765 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (366)
Q Consensus 209 a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l 284 (366)
+.+|||++|+++++.+ .+++.|+||++.||+++. .|+++|+|++++++|.||||+||.+++++.. +++......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997432 356789999999999986 5899999999999999999999999999875 4666666777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~a 364 (366)
...|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|++......++++
T Consensus 238 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~a 317 (380)
T PRK03354 238 DHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMC 317 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998876656667777
Q ss_pred cC
Q 017765 365 KV 366 (366)
Q Consensus 365 K~ 366 (366)
|+
T Consensus 318 K~ 319 (380)
T PRK03354 318 KY 319 (380)
T ss_pred HH
Confidence 73
No 10
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.4e-56 Score=430.42 Aligned_cols=311 Identities=27% Similarity=0.408 Sum_probs=283.6
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchh
Q 017765 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (366)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~ 133 (366)
++++|+.+++.+++|+++++.|...++|+.+.+|.++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 478899999999999999999988888888899999999999999999977 9999999999999999999999998877
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 017765 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (366)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad 213 (366)
+.+..+ .++...+..+|+++||++||+++.+|+.++++++|||+.|||...+.|++++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 655444 3455566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHH
Q 017765 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (366)
Q Consensus 214 ~~~v~a~~~~~------~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~ 286 (366)
|++|+++++++ .++++|+||.+.||+++.+.|+++|+++++++++.||||+||++++++.. .++......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999997532 35789999999999999999999999999999999999999999999865 577777788888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
.|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++......++++|+
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~ 319 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKA 319 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887554455666663
No 11
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.5e-56 Score=428.33 Aligned_cols=311 Identities=32% Similarity=0.490 Sum_probs=287.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchh
Q 017765 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (366)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~ 133 (366)
++++++.+++.+++|+++++.|.+.+.|+.+.+|.++|+.|++.||+++.+ ++|||.|+++.+...+++++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 578999999999999999999988888888889999999999999999977 9999999999999999999999999998
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 017765 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (366)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad 213 (366)
+.+..|..++...|..+|+++|+++|+|++.+|+.++++++|||.+|||...+.|+|++++|||+|||+|+|+||+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 87777766666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhH
Q 017765 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (366)
Q Consensus 214 ~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (366)
+++|+++++++ .++.+|+||.+.||+++.+.|+++|++++++++|.|+||+||++++++.. .++......+...|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997643 46889999999999999999999999999999999999999999999875 567777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|.+......++++|
T Consensus 242 ~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k 317 (376)
T cd01156 242 VLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVI 317 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765444455554
No 12
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.9e-56 Score=428.39 Aligned_cols=310 Identities=27% Similarity=0.362 Sum_probs=283.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchh
Q 017765 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (366)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~ 133 (366)
|+++|..+++.+++|+++++.|...+.|+.+.+|.++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.|++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 578899999999999999999988888888899999999999999999977 9999999999999999999999999987
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 017765 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (366)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad 213 (366)
+....+ .++...+..+|+++||++|||++.+|+.++++++|||++|||...+.|+|++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654333 3556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHh
Q 017765 214 VLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (366)
Q Consensus 214 ~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r 288 (366)
|++|+++++++ .++.+|+||++.||+++. .|+++|++++++++|+|+||+||++++++.. .++......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 99999998531 467899999999999975 6899999999999999999999999999875 57777778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|++++++++.+|.+.+...+++++|+
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~ 316 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKW 316 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987655556777774
No 13
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-56 Score=428.14 Aligned_cols=312 Identities=22% Similarity=0.330 Sum_probs=281.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
|++.+++++..+++.+++|+.+.+. +...++|+.+.+|.++|++|+++||+++.+ ++|||.|.++.+.+.++|++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 5677899999999999999999875 466677888899999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHH-hcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeec
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l-~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is 207 (366)
|.+ .+.+ ++.++...+..+|+++||++||+++ .+|+.++|+++|||++|||...++|+|++++|||+|||+|+|||
T Consensus 81 ~~~-~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAP-AFLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred Chh-HHHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 987 3332 3334556788899999999999999 59998999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHH
Q 017765 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSK 282 (366)
Q Consensus 208 ~a~~Ad~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~ 282 (366)
|+..||+++|+|+++++ .++++|+||++.|||++. .|+++|++++++++|+|+||+||++++|+.. +++.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999997542 357899999999999985 6899999999999999999999999999875 56766677
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccc
Q 017765 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHAS 362 (366)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~ 362 (366)
.+...|+.+++.++|+++++++.+++|+++|++||+||.++|.||++|++|.++++++|++++++++.+|++......++
T Consensus 237 ~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~ 316 (381)
T PRK12341 237 NFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAA 316 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999998776555667
Q ss_pred cccC
Q 017765 363 LGKV 366 (366)
Q Consensus 363 ~aK~ 366 (366)
++|+
T Consensus 317 ~aK~ 320 (381)
T PRK12341 317 LAKL 320 (381)
T ss_pred HHHH
Confidence 7763
No 14
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.3e-56 Score=452.57 Aligned_cols=357 Identities=20% Similarity=0.246 Sum_probs=303.3
Q ss_pred CCCCCCChhhhHHHHhhcCCCCcccccc-ccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhc---ccc
Q 017765 2 TIHSSKHQDDVDKNARSSYFNLPALDIS-VAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---API 77 (366)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~ 77 (366)
+.+.+.....||++.|+.||........ ...+.+|.+ ....+.|+..|...+++++.++++++++|+.+++ .|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~ 86 (686)
T PLN02636 9 RAEDDGEIAARRIQRLSLHLSPVPLPKEEQLSRLVCAR--SIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPV 86 (686)
T ss_pred ccccchhHHHHHHHHHHHhcCcCCCCCcccCCcccccc--cccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCc
Confidence 4566778888999999999985432221 222333332 2233457777888899989999999999998763 565
Q ss_pred HHHHHHhCCCC-HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHH
Q 017765 78 MAEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQ 155 (366)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q 155 (366)
...+++.++++ .++++.+.+.|++++.+ ++ ++.++..+.|++++.+.+++..+.+|..+++..|..+||++|
T Consensus 87 ~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQ 160 (686)
T PLN02636 87 EISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKH 160 (686)
T ss_pred hhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHH
Confidence 66677777888 88999999999999865 43 788899999999999988887888998888899999999999
Q ss_pred HHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeeecCCCC-CCEEEEEEEeCC----
Q 017765 156 KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNTT---- 223 (366)
Q Consensus 156 ~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~a~~-Ad~~~v~a~~~~---- 223 (366)
|++|||++.+|+.++|||+|||++|||+.+++|||+++ +|+|+|| |+|+||+|+.. ||+++|+|++..
T Consensus 161 k~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~ 240 (686)
T PLN02636 161 RDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHD 240 (686)
T ss_pred HHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999998 7899999 99999999965 999999999851
Q ss_pred -----CCCeeEEEEeCC-------CCCeEEecccCcccccccceeeEEEcceeeCCCCcccC-----------------C
Q 017765 224 -----TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------V 274 (366)
Q Consensus 224 -----~~~~~~flV~~~-------~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~-----------------~ 274 (366)
+.|+++|+||.+ .|||++.++++|+|+++++++.|.||||+||++++|+. .
T Consensus 241 ~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~ 320 (686)
T PLN02636 241 SKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTIN 320 (686)
T ss_pred ccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcc
Confidence 358999999987 69999999999999999999999999999999999942 2
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC------ccchhhHHHHHHHHHHHHHHHH----HHH
Q 017765 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP------LAAFQINQQKLVQMLGNIQAMI----LVG 344 (366)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~p------i~~~q~vq~~La~~~~~l~a~r----~~~ 344 (366)
.+|...+..+..+|+.+++.++|++++|++++++|+++|+|||+| |++||.+|++|++|.+.+++++ .++
T Consensus 321 ~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~ 400 (686)
T PLN02636 321 KRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLV 400 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999999999999999999999 9999999999999999999965 566
Q ss_pred HHHHHHHHcCC-----CChhccccccC
Q 017765 345 WRLCKLYEKGA-----MTPGHASLGKV 366 (366)
Q Consensus 345 ~~~a~~~d~g~-----~~~~~a~~aK~ 366 (366)
+.+++..+++. .....++++|+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~as~aK~ 427 (686)
T PLN02636 401 ERYSEMKKTHDDQLVADVHALSAGLKA 427 (686)
T ss_pred HHHHHHHhcCCcccchhhHHHHHHHHH
Confidence 66666665543 23556778774
No 15
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=5.7e-56 Score=425.56 Aligned_cols=310 Identities=31% Similarity=0.482 Sum_probs=286.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchh
Q 017765 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (366)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~ 133 (366)
++++|+++++.+++|+++++.|...++|..+.+|+++|++|+++||+++.+ ++|||.|.++.+.+.++++++++|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 478899999999999999999988888888899999999999999999977 9999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 017765 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (366)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad 213 (366)
+.+..|. ++..++..+|+++|+++|+|++.+|+.++++++|||++|||...+.|++++++|||+|||+|+||+|+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7777765 566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC--CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHH
Q 017765 214 VLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (366)
Q Consensus 214 ~~~v~a~~~~~--~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~ 290 (366)
+++|+++++++ .++++|+||++.||+++.+.|+++|++++++++|.||||+||++++++.. .++......+...|+.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999997542 46889999999999999999999999999999999999999999999875 5677777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-hhcccccc
Q 017765 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGK 365 (366)
Q Consensus 291 ~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~-~~~a~~aK 365 (366)
+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+. ...++++|
T Consensus 240 ~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak 315 (375)
T cd01162 240 IASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAK 315 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987532 33455665
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=5.6e-56 Score=425.38 Aligned_cols=308 Identities=28% Similarity=0.410 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHH
Q 017765 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTF 135 (366)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~ 135 (366)
++|+++++.+++|+.+++.|...++|+.+.+|+++|++|+++||+++.+ ++|||.|+++.+...++|++++.+.+ ++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~ 79 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPG 79 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHH
Confidence 3678999999999999998888888888899999999999999999977 99999999999999999999996644 666
Q ss_pred HHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEE
Q 017765 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215 (366)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~ 215 (366)
+.+|..++...+..+|+++||++|||++.+|+.++|+++|||++|||...+.|++++++|||+|||+|.||||+..||++
T Consensus 80 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~ 159 (372)
T cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVV 159 (372)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEE
Confidence 66676566678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHH
Q 017765 216 VIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (366)
Q Consensus 216 ~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~ 290 (366)
+|.++++++ .++++|+||.+.||+++.+.|+++|++++++++|+|+||+||++++|+.. .++......+...|+.
T Consensus 160 ~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~ 239 (372)
T cd01160 160 IVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLL 239 (372)
T ss_pred EEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 999998643 46889999999999999999999999999999999999999999999876 5677777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 291 ~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+......++++|
T Consensus 240 ~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK 314 (372)
T cd01160 240 IAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAK 314 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988765555666666
No 17
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-56 Score=429.85 Aligned_cols=311 Identities=25% Similarity=0.368 Sum_probs=285.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCc
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s 131 (366)
+.++++++++++.+++|+++++.|.+.+.|..+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+++++|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 46899999999999999999999988888888899999999999999999977 99999999999999999999999988
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCC-EEEEeeeeeeecCCC
Q 017765 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~-g~~lnG~K~~is~a~ 210 (366)
+++.+..|..+....+..+|+++||++|||++.+|+.++|+++|||++|||..++.|+|++++| ||+|||+|+||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 8776666665556678889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhH
Q 017765 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (366)
Q Consensus 211 ~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (366)
.|||++|+++++ +++++|+||++.||+++.+.|+++|+++++++++.|+||+||++++|+.. .++......+...|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 45889999999999999999999999999999999999999999999875 567777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+......++++|
T Consensus 273 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK 348 (410)
T PTZ00461 273 TLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAK 348 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887654444555565
No 18
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.2e-55 Score=427.75 Aligned_cols=316 Identities=28% Similarity=0.372 Sum_probs=286.2
Q ss_pred cccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHH
Q 017765 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (366)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (366)
|.-|++.+++++.++++.+++|+++++.|. .+++.+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+++
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~ 97 (409)
T cd01161 20 PSVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG 97 (409)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence 455777889999999999999999988875 35667789999999999999999977 999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEE--eCCEEEEeeeee
Q 017765 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKR 204 (366)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~--~~~g~~lnG~K~ 204 (366)
+ |+++++.+.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||...+.|+|++ +++||+|||+|+
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~ 176 (409)
T cd01161 98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI 176 (409)
T ss_pred h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence 9 9998887777765555567889999999999999999999999999999999999999999999 456799999999
Q ss_pred eecCCCCCCEEEEEEEeCC-------CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CC
Q 017765 205 WIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NS 276 (366)
Q Consensus 205 ~is~a~~Ad~~~v~a~~~~-------~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~ 276 (366)
||||+..|||++|.++++. .+++++|+||.+.||+++.+.|+++|++++++++|.|+||+||++++++.. ++
T Consensus 177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g 256 (409)
T cd01161 177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG 256 (409)
T ss_pred eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence 9999999999999999752 146789999999999999999999999999999999999999999999875 56
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017765 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM 356 (366)
Q Consensus 277 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~ 356 (366)
+......+..+|+.+++.++|+++++++.+++|+++|+|||+||.++|.+|++|++|.++++++|++++++++.+|++..
T Consensus 257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~ 336 (409)
T cd01161 257 FKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLK 336 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred --ChhccccccC
Q 017765 357 --TPGHASLGKV 366 (366)
Q Consensus 357 --~~~~a~~aK~ 366 (366)
....++++|+
T Consensus 337 ~~~~~~~~~aK~ 348 (409)
T cd01161 337 AEYQIEAAISKV 348 (409)
T ss_pred cchHHHHHHHHH
Confidence 3445677763
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-55 Score=442.18 Aligned_cols=306 Identities=25% Similarity=0.307 Sum_probs=274.0
Q ss_pred CCHHHHHHHHH-HHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 55 LTSEEQAVRMK-VRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 55 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
|++|++++++. +++|++. ..+++. .+.+|+++|++|+++||+++.+ ++|||.|++..+.+.++|++++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~ 153 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRS 153 (777)
T ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 79999999996 7877764 233333 4689999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHH-HHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEE-----EEeCC---EEEEe
Q 017765 130 ASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA-----TKVEG---GWILE 200 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~-~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A-----~~~~~---g~~ln 200 (366)
.+++..+.+|++++. .+|..+|+++||++|||++++|+.++|+++|||++|||+.++.|++ +++|+ ||+||
T Consensus 154 ~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN 233 (777)
T PRK09463 154 GTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT 233 (777)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE
Confidence 888777777776664 4788999999999999999999999999999999999999988654 34566 69999
Q ss_pred eeeeeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcc
Q 017765 201 GQKRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271 (366)
Q Consensus 201 G~K~~is~a~~Ad~~~v~a~~-~~--------~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l 271 (366)
|+|.||||++.||+++|++++ ++ +.++++|+||.+.|||++.+.++++|++ ..+++++|+||+||.+++|
T Consensus 234 G~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lL 312 (777)
T PRK09463 234 WNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYII 312 (777)
T ss_pred EEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhc
Confidence 999999999999999999986 21 2579999999999999999999999998 5689999999999999999
Q ss_pred cC----CCCHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 017765 272 PG----VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWR 346 (366)
Q Consensus 272 ~~----~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~ 346 (366)
|. ++||..++..++.+| +.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.+++++++++.+.
T Consensus 313 G~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~ 392 (777)
T PRK09463 313 GGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTL 392 (777)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 468889999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCChhccccccC
Q 017765 347 LCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 347 ~a~~~d~g~~~~~~a~~aK~ 366 (366)
+++.+|.|.....+++++|+
T Consensus 393 ~a~~~D~G~~~~~~aA~AK~ 412 (777)
T PRK09463 393 TTAAVDLGEKPSVLSAIAKY 412 (777)
T ss_pred HHHHHhCCCCchHHHHHHHH
Confidence 99999998766677888884
No 20
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5e-54 Score=414.02 Aligned_cols=308 Identities=24% Similarity=0.285 Sum_probs=268.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCH----HHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHH
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (366)
+.++++|+++++.+++|+.+++.|...+.+ +...+|. ++|++|.++||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998887655433 3334664 8999999999999977 999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeee
Q 017765 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (366)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 206 (366)
+++.+.++...++ ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|+|+|||+|.||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v 159 (395)
T TIGR03204 82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT 159 (395)
T ss_pred hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence 9998876543322 34457888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHH
Q 017765 207 GNSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (366)
Q Consensus 207 s~a~~Ad~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~ 281 (366)
+|+..||+++|+++++++ .++++|+||.+.||+++.+...+.| +.++++|.|+||+||++++|+.. .++....
T Consensus 160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 237 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK 237 (395)
T ss_pred cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 999999999999997532 4689999999999999987666655 67899999999999999999875 5788888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-CChh
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLY-EKGA-MTPG 359 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~-d~g~-~~~~ 359 (366)
..+...|+.+++ +|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|+++++++... +.+. ....
T Consensus 238 ~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~ 315 (395)
T TIGR03204 238 FLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNP 315 (395)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 889999999876 89999999999999999999999999999999999999999999999999997544 3332 2345
Q ss_pred ccccccC
Q 017765 360 HASLGKV 366 (366)
Q Consensus 360 ~a~~aK~ 366 (366)
.++++|+
T Consensus 316 ~aa~aK~ 322 (395)
T TIGR03204 316 ASSVLKI 322 (395)
T ss_pred HHHHHHH
Confidence 7888884
No 21
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.2e-54 Score=437.44 Aligned_cols=363 Identities=22% Similarity=0.248 Sum_probs=300.1
Q ss_pred CCCCCCCChhhhHHHHhhcCCCCccccc-cccCCCCCCCCCCCCC-----CCCcccCCcCCCHHHHHHHHHHHHHHHhhc
Q 017765 1 MTIHSSKHQDDVDKNARSSYFNLPALDI-SVAFPQATPASKFPPC-----ASDYYQFDDLLTSEEQAVRMKVRECMEKEI 74 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 74 (366)
|.++.+++.+.||+.+|+.||..|.+.. ....+.+|.. +.||. +.|+..|...|..+..+.++++++++.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p 79 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQSPPSPNSSLTPSPCLQ-YSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSD 79 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCCCCCCcccCCchhhhh-cCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCc
Confidence 7788889999999999999998743222 2223333331 12221 235555666666666778888888876542
Q ss_pred c-------------ccH-HHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHh
Q 017765 75 A-------------PIM-AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 140 (366)
Q Consensus 75 ~-------------~~~-~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~ 140 (366)
. |.. ...++..+++.+.++++.+.|++++.+++. |.+ +....+.++|++++.+++++..+.+|.
T Consensus 80 ~f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~-g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~ 157 (680)
T PLN02312 80 LFNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET-GPE-AELRKLALLEVIGIYDHSLAIKLGVHF 157 (680)
T ss_pred cccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC-CCc-cHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 1 111 134566788899999999999999877332 333 678889999999999988877788898
Q ss_pred hHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeeecCC-CCC
Q 017765 141 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFA 212 (366)
Q Consensus 141 ~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~a-~~A 212 (366)
++++..|..+||++||++|||++.+|+.++|||+|||++|||+.+++|||+++ +|+|+|| |+|+||+|+ ..|
T Consensus 158 ~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A 237 (680)
T PLN02312 158 FLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHA 237 (680)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccC
Confidence 88889999999999999999999999999999999999999999999999998 5789999 799999998 789
Q ss_pred CEEEEEEEeCC---CCCeeEEEEeC---C---CCCeEEecccCcccccccceeeEEEcceeeCCCCcccC----------
Q 017765 213 DVLVIFARNTT---TNQINGYLVKK---D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------- 273 (366)
Q Consensus 213 d~~~v~a~~~~---~~~~~~flV~~---~---~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~---------- 273 (366)
|+++|+||+.. +.|+++|+||. + .|||++.++++|+|+++++++.|+||||+||++++|+.
T Consensus 238 ~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y 317 (680)
T PLN02312 238 THTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKY 317 (680)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCce
Confidence 99999999853 25899999983 3 89999999999999999999999999999999999973
Q ss_pred -------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----C---ccchhhHHHHHHHHHHHHHH
Q 017765 274 -------VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA----P---LAAFQINQQKLVQMLGNIQA 339 (366)
Q Consensus 274 -------~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~----p---i~~~q~vq~~La~~~~~l~a 339 (366)
..++...+..+..+|+.+++.++|++++|++++++|+++|+|||+ | |++||.+|++|++|++++++
T Consensus 318 ~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a 397 (680)
T PLN02312 318 VSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYA 397 (680)
T ss_pred ecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHH
Confidence 246777788999999999999999999999999999999999995 4 99999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-----ChhccccccC
Q 017765 340 MILVGWRLCKLYEKGAM-----TPGHASLGKV 366 (366)
Q Consensus 340 ~r~~~~~~a~~~d~g~~-----~~~~a~~aK~ 366 (366)
++.....+.+.++++.. ...+++++|+
T Consensus 398 ~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa 429 (680)
T PLN02312 398 MSFAANDLKMIYVKRTPESNKAIHVVSSGFKA 429 (680)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 99988888888776432 3557788873
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-54 Score=432.37 Aligned_cols=306 Identities=26% Similarity=0.312 Sum_probs=264.6
Q ss_pred CCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCch
Q 017765 55 LTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (366)
Q Consensus 55 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~ 132 (366)
|++|++.+.+ .++.+++. +. .....++.+.+|+++|++|+++||+++.+ ++|||.|++..+...++|++++.+.++
T Consensus 78 l~~eeq~fl~~~v~~l~~~-~~-e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~ 155 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTM-LD-DWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSA 155 (774)
T ss_pred cCHHHHHHHHHHHHHHHhh-hh-hhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccch
Confidence 6777666655 56777653 21 12223456899999999999999999977 999999999999999999999988887
Q ss_pred hHHHHHHhhHH-HHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEE-----EeCC---EEEEeeee
Q 017765 133 STFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQK 203 (366)
Q Consensus 133 ~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~-----~~~~---g~~lnG~K 203 (366)
+..+.+|++++ ..+|..+|+++||++|||++++|+.++|+|+|||++|||+.++.|+++ ++|+ ||+|||+|
T Consensus 156 a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K 235 (774)
T PRK13026 156 AVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEE
Confidence 77666776655 457899999999999999999999999999999999999999987654 4666 69999999
Q ss_pred eeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccC-
Q 017765 204 RWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG- 273 (366)
Q Consensus 204 ~~is~a~~Ad~~~v~a~~-~~--------~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~- 273 (366)
.||||++.||+++|.+++ ++ +.|+++|+||.+.|||++.+.++++|+++. +++++||||+||.+++||+
T Consensus 236 ~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~ 314 (774)
T PRK13026 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP 314 (774)
T ss_pred EeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc
Confidence 999999999999888764 22 247899999999999999999999999974 6899999999999999986
Q ss_pred ---CCCHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHH---HHHHHHHHHHH
Q 017765 274 ---VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLG---NIQAMILVGWR 346 (366)
Q Consensus 274 ---~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~---~l~a~r~~~~~ 346 (366)
++||...+..++.+| +.+++.++|++++|++.+++|+++|+|||+||++||.||++|++|.+ .++++|.++++
T Consensus 315 ~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~ 394 (774)
T PRK13026 315 DYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTT 394 (774)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999 89999999999999999999999999999999999999999999999 78999999887
Q ss_pred HHHHHHcCCCChhccccccC
Q 017765 347 LCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 347 ~a~~~d~g~~~~~~a~~aK~ 366 (366)
++ |+|.....+++++|+
T Consensus 395 a~---D~G~~~~~~aA~AK~ 411 (774)
T PRK13026 395 GL---DLGVKPSVVTAIAKY 411 (774)
T ss_pred HH---HCCCCchHHHHHHHH
Confidence 54 666655667888884
No 23
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=9.7e-54 Score=410.05 Aligned_cols=308 Identities=41% Similarity=0.598 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHH
Q 017765 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (366)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~ 136 (366)
++.++++.+++|+++++.+.+.+.|+.+.+|.++|+.|++.||+++.+ ++|||.|.++.+...++++++++|+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 678999999999999888888888888889999999999999999977 9999999999999999999999999999888
Q ss_pred HHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEE
Q 017765 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (366)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~ 216 (366)
.+|..++...+..+++++|+++|++++.+|+.++++++|||.+||+...+.+++++++|||+|||+|.|++|+.+|||++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 88876677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHH
Q 017765 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (366)
Q Consensus 217 v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (366)
|.++++++ .++++|+||.+.|||++.+.|+++|++++++++|.|+||+||++++++.. .++......+...|+.++
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~ 241 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA 241 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99997543 45789999999999999999999999999999999999999999999876 467777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 293 a~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
+.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.+.++++|++++++++.++.+.+...+++++|
T Consensus 242 a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k 314 (373)
T cd01158 242 AQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAK 314 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988765445555555
No 24
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.7e-53 Score=409.42 Aligned_cols=308 Identities=20% Similarity=0.251 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHhC-------CCC----HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHH
Q 017765 59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (366)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (366)
.+++++.+++|+++++.|...++++.+ .+| +++|+.++++||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 567999999999999998877766421 134 58899999999999977 999999999999999999999
Q ss_pred ccCCc-hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCC-CCCCcCCCceEEEEeCCEEEEeeeee
Q 017765 127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (366)
Q Consensus 127 ~~~~s-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~t~A~~~~~g~~lnG~K~ 204 (366)
+++.. .++....+...+..+|..+|+++||++|||++.+|+.++|+++|||+ .|||...+.|+|++++|||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98633 22212222222345788999999999999999999999999999997 58999999999999999999999999
Q ss_pred eecCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCCCCeEEecccCcccccc--cceeeEEEcceeeCCCCcccCC-
Q 017765 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (366)
Q Consensus 205 ~is~a~~--Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~~~~~~~~~G~r~--~~~~~v~f~~v~vp~~~~l~~~- 274 (366)
||||+.+ +|+++|+++++++ .++++|+||++.||+++.+.|+++|+++ +++++|.|+||+||++++++..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999955 7899999997532 3688999999999999999999999997 6789999999999999999865
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
.++......+...|+..++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++++
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~ 322 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV 322 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56777788888999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CC--ChhccccccC
Q 017765 355 AM--TPGHASLGKV 366 (366)
Q Consensus 355 ~~--~~~~a~~aK~ 366 (366)
.. ....++++|+
T Consensus 323 ~~~~~~~~~~~aK~ 336 (394)
T cd01155 323 GNKAARKEIAMIKV 336 (394)
T ss_pred CCcchhHHHHHHHH
Confidence 33 3456777763
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1e-51 Score=398.72 Aligned_cols=314 Identities=37% Similarity=0.532 Sum_probs=280.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
+.+++++.++++.+++|+++.+.|...+.+. ...+|.++++++.+.|++++.+ ++|||.|.+..+...+.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~ 82 (393)
T COG1960 3 FDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARA 82 (393)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhh
Confidence 3455888999999999999988877777775 5889999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhH---HHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCc-eEEEEeCCEEEEeeeee
Q 017765 129 DASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKR 204 (366)
Q Consensus 129 ~~s~~~~~~~~~~~---~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~-t~A~~~~~g~~lnG~K~ 204 (366)
+++.+..+..+... ....+..+|+++||++|||++.+|+.++|+++|||++|||+..+. |++++++|+|+|||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~ 162 (393)
T COG1960 83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI 162 (393)
T ss_pred CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence 98776655554322 223677899999999999999999999999999999999999987 77777666699999999
Q ss_pred eecCCCCCCEEEEEEEeCCC----CCeeEEEEeCC-CCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHH
Q 017765 205 WIGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQ 278 (366)
Q Consensus 205 ~is~a~~Ad~~~v~a~~~~~----~~~~~flV~~~-~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~ 278 (366)
||||+..|||++|+|+++++ +++++|+||.+ .||+++.+.|++.|++++++++|.|+||+||.+++++.. .++.
T Consensus 163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~ 242 (393)
T COG1960 163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK 242 (393)
T ss_pred EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHH
Confidence 99999999999999999753 57999999999 599999998854499999999999999999999999854 6899
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 017765 279 DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP 358 (366)
Q Consensus 279 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~ 358 (366)
.....++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++..+.+....
T Consensus 243 ~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~ 322 (393)
T COG1960 243 IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAG 322 (393)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876444
Q ss_pred hccccccC
Q 017765 359 GHASLGKV 366 (366)
Q Consensus 359 ~~a~~aK~ 366 (366)
..++++|+
T Consensus 323 ~~~~~aK~ 330 (393)
T COG1960 323 AEAAMAKL 330 (393)
T ss_pred HHHHHHHH
Confidence 66777763
No 26
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.5e-50 Score=389.11 Aligned_cols=288 Identities=23% Similarity=0.270 Sum_probs=260.2
Q ss_pred HHHHHHHHHhhccccHHHHHHhCC--------CC---HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCC
Q 017765 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (366)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 130 (366)
++.+++|+.+++.|.+.++|+... || .++|++|++.||+++.+ ++|||.|.++.+...+.|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578899999999998887776554 99 67899999999999977 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeecCC
Q 017765 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (366)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~lnG~K~~is~a 209 (366)
++++.+..|. +...+..+|+++||++|+|++.+|+.++|+++|||++|||...+.|+++++ +|||+|||+|+|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9887665553 445678889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC----CCeeEEEEeCCC-----CCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-C
Q 017765 210 TFA----DVLVIFARNTTT----NQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 275 (366)
Q Consensus 210 ~~A----d~~~v~a~~~~~----~~~~~flV~~~~-----pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~ 275 (366)
.+| ++++|+++++++ .++++|+||++. ||+++.+.|+++|++++++++|.|+||+|| +|+.. .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 578899987531 368999999987 899999999999999999999999999999 67664 5
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017765 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP--------LAAFQINQQKLVQMLGNIQAMILVGWRL 347 (366)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~p--------i~~~q~vq~~La~~~~~l~a~r~~~~~~ 347 (366)
++......+...|+.+++.++|+++++++.+++|+++|++||+| +.++|.+|++|++|.++++++|++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred HHHHHcCC
Q 017765 348 CKLYEKGA 355 (366)
Q Consensus 348 a~~~d~g~ 355 (366)
++.+|.+.
T Consensus 317 a~~~d~~~ 324 (407)
T cd01153 317 ATVQDLAE 324 (407)
T ss_pred HHhccccc
Confidence 99998753
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.3e-50 Score=418.64 Aligned_cols=314 Identities=19% Similarity=0.229 Sum_probs=272.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-HHHHHHHH-hcCCccCCc-CC---------------
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGGTI-KG--------------- 107 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~--------------- 107 (366)
+.+++++.++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++.+ ++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 668999999999999999999888766655322 377 57888875 999999987 63
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHccCCchhHH-HHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCC
Q 017765 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (366)
Q Consensus 108 ---------~GG~g~~~~~~~~v~e~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp 177 (366)
|||.|+++.+.+.++|++++++.+.... ..++....+..|..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986442211 112222344578899999999999999999999999999999
Q ss_pred C-CCCCcCCCceEEEEeCCEEEEeeeeeeecCC--CCCCEEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccc
Q 017765 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGL 250 (366)
Q Consensus 178 ~-~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a--~~Ad~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~ 250 (366)
+ +|||..++.|+|++++|||+|||+|+||||+ ..||+++|+++++++ +++++|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 569999999997532 46789999999999999999999999
Q ss_pred ccc--ceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHH
Q 017765 251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 327 (366)
Q Consensus 251 r~~--~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq 327 (366)
+++ ++++|.||||+||++++++.. .++......+..+|+.+++.++|++++|++.+++|+++|+|||+||+++|.+|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq 719 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFL 719 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHH
Confidence 984 588999999999999999765 57777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhccccccC
Q 017765 328 QKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHASLGKV 366 (366)
Q Consensus 328 ~~La~~~~~l~a~r~~~~~~a~~~d~g~--~~~~~a~~aK~ 366 (366)
++|++|.++++++|++++++++.+|++. .....++++|+
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~ 760 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKV 760 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHH
Confidence 9999999999999999999999999842 23456777774
No 28
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.4e-50 Score=383.10 Aligned_cols=302 Identities=27% Similarity=0.370 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHHhhccccHHHH-----HHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCc
Q 017765 58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (366)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s 131 (366)
+|+++++.+++|+++++.|..... +..+.+|.++++.|++.||+++.+ ++|||.|.++.+.+.++|++++.|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~ 81 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP 81 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence 678999999999999988865432 345678999999999999999977 99999999999999999999999988
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCC
Q 017765 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~ 211 (366)
+++.+..+. ++...|..+|+++|+++||+++.+|+.++++++|||++|||...+.|+++++++||+|||+|.|||++..
T Consensus 82 ~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ 160 (380)
T cd01152 82 VPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160 (380)
T ss_pred cccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence 876522222 3556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHH
Q 017765 212 ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (366)
Q Consensus 212 Ad~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~ 286 (366)
||+++|+++++++ .++++|+||++.||+++.+.|+++| +++++++.|+||+||++++|+.. .++......+..
T Consensus 161 ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~ 238 (380)
T cd01152 161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNF 238 (380)
T ss_pred cCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHh
Confidence 9999999997542 3688999999999999999998888 66889999999999999999875 567777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
.|+.+++ ++..+++.+++|+++|.+||+||.++|.+|++|++|.++++++|++++++++.++++.....+++++|+
T Consensus 239 ~r~~~~~----~~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~ 314 (380)
T cd01152 239 ERVSIGG----SAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKL 314 (380)
T ss_pred cccccch----hhhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 7877654 455556677889999999999999999999999999999999999999999999987654556677773
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.6e-49 Score=379.85 Aligned_cols=284 Identities=19% Similarity=0.256 Sum_probs=252.1
Q ss_pred HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHH
Q 017765 65 KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA 143 (366)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~ 143 (366)
+++++.+. +.+.+.++|+.+.+|.+.|+.|++.||+++.+ ++|||.|+++.+...++|++++.|+++++.+.+|.. .
T Consensus 2 ~~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~ 79 (377)
T cd01163 2 RARPLAAR-IAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-F 79 (377)
T ss_pred hHHHHHHH-HhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-H
Confidence 35566654 77778888999999999999999999999977 999999999999999999999999999988777764 4
Q ss_pred HHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCC
Q 017765 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223 (366)
Q Consensus 144 ~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 223 (366)
...+..+|+++||++|++++.+|++++ .++|||++|+ ...+.+++++++|||+|||+|.||||+..|||++|++++++
T Consensus 80 ~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 157 (377)
T cd01163 80 VEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE 157 (377)
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC
Confidence 467888999999999999999999665 5999999876 66777888888999999999999999999999999999754
Q ss_pred CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017765 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGV 302 (366)
Q Consensus 224 ~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~-~~~~~~~~l~~~r~~~aa~~~G~a~~a 302 (366)
+++.+|+||.+.||+++.+.|+++|++++++++|+|+||+||++++++..+ ++. ....+...|+.+++.++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999998753 332 23345677899999999999999
Q ss_pred HHHHHHHHhhhh-hcCC----CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 303 YDMCHRYLKERK-QFGA----PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 303 l~~a~~ya~~R~-qfg~----pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
++.+++|+++|+ +||+ ++.++|.+|++|++|.++++++|++++++++.+|++
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~ 292 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAA 292 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 7886 478999999999999999999999999999999875
No 30
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8e-48 Score=385.38 Aligned_cols=295 Identities=17% Similarity=0.194 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHH
Q 017765 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (366)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (366)
+....+++.+++|+++++.|...+.|+.+.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 3456789999999999999988877775533 5 58999999999999977 999999999875555555
Q ss_pred HHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCC-EEEEeee
Q 017765 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQ 202 (366)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~-g~~lnG~ 202 (366)
.+++.+++++.....+. .+...|..+|+++||++|||++.+|++++++++|||++|||+..+.|+|++++| +|+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 56677776554433332 345678999999999999999999999999999999999999999999999987 4999999
Q ss_pred eeeecCCCCC----CEEEEEEEeCC----CCCeeEEEEeCCC----------CCeEEecccCcccccccceeeEEEccee
Q 017765 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (366)
Q Consensus 203 K~~is~a~~A----d~~~v~a~~~~----~~~~~~flV~~~~----------pGv~~~~~~~~~G~r~~~~~~v~f~~v~ 264 (366)
|.|||++.++ ++++|+||+++ .+|+++|+||++. +|+++.+.++++|++++++++|.|||+
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~- 295 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS- 295 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence 9999999863 67899999864 2679999999864 478888889999999999999999994
Q ss_pred eCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------CCCccchhhHHHHHH
Q 017765 265 VPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF------------GAPLAAFQINQQKLV 331 (366)
Q Consensus 265 vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf------------g~pi~~~q~vq~~La 331 (366)
.+++||.+ +|+..+...++.+|+.+++.++|+++++++.+++|+++|+|| ++||.++|.||++|+
T Consensus 296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~ 373 (622)
T PTZ00456 296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNIL 373 (622)
T ss_pred --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHH
Confidence 57899876 578888999999999999999999999999999999999995 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Q 017765 332 QMLGNIQAMILVGWRLCKLYEKGA 355 (366)
Q Consensus 332 ~~~~~l~a~r~~~~~~a~~~d~g~ 355 (366)
+|.+.++++|++++++++.+|.+.
T Consensus 374 ~~~a~~eaaral~~~aA~~~D~~~ 397 (622)
T PTZ00456 374 FAKAVAEGGRALLLDVGRLLDIHA 397 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999753
No 31
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-49 Score=371.75 Aligned_cols=320 Identities=27% Similarity=0.388 Sum_probs=287.3
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccc--cHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (366)
|.+.++..+++|+.++.+.+..-+++.+.. +....|+....++.+++.|+++|++++.+ ++|||.|+...++..+.|
T Consensus 68 ~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e 147 (634)
T KOG0137|consen 68 DVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFE 147 (634)
T ss_pred hhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhh
Confidence 667788889999887665444333332221 23446777899999999999999999988 999999999999999999
Q ss_pred HHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeC--CEEEEee
Q 017765 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEG 201 (366)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~lnG 201 (366)
.++.+|.+++..+..|..+..-.|..+|+++||++|||++++|+.+++||+|||..|||..+..|+|+... +.|+|||
T Consensus 148 ~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG 227 (634)
T KOG0137|consen 148 IVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNG 227 (634)
T ss_pred ccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcC
Confidence 99999999998888888778888999999999999999999999999999999999999999999999854 5599999
Q ss_pred eeeeecCCCCCCEEEEEEEeCCC-------CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC
Q 017765 202 QKRWIGNSTFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274 (366)
Q Consensus 202 ~K~~is~a~~Ad~~~v~a~~~~~-------~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~ 274 (366)
.|.||+|+..||+++|+|+++.+ +++++|+|+++..|++-.+...+||.+|+.+++|+|++|.||.+++||.+
T Consensus 228 ~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~ 307 (634)
T KOG0137|consen 228 SKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKP 307 (634)
T ss_pred eeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCC
Confidence 99999999999999999998621 56999999999999999999999999999999999999999999999987
Q ss_pred -CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017765 275 -NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 275 -~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~ 353 (366)
+|++..+.+++.+|+..++..+|.++++++.+.+|+..|+|||++|.+|..+|.++++|...++++.+++|..+..+|+
T Consensus 308 G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~ 387 (634)
T KOG0137|consen 308 GDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE 387 (634)
T ss_pred CcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CC-CChhccccccC
Q 017765 354 -GA-MTPGHASLGKV 366 (366)
Q Consensus 354 -g~-~~~~~a~~aK~ 366 (366)
+. +-.-++++.|+
T Consensus 388 ~~a~d~~lEaai~Ki 402 (634)
T KOG0137|consen 388 VGAKDVQLEAAILKI 402 (634)
T ss_pred ccceeeeehHHHHHH
Confidence 33 33556776663
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=5.9e-46 Score=360.11 Aligned_cols=279 Identities=20% Similarity=0.276 Sum_probs=241.5
Q ss_pred HHHHHHhhccccHHHHHHhCC------CC---HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHH
Q 017765 66 VRECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTF 135 (366)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~ 135 (366)
..++++.+ .|...++|..++ +| .++++++.+.||+++ + +++||.| ......+.+.++..+.+....
T Consensus 37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p 112 (418)
T cd01154 37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCP 112 (418)
T ss_pred HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCc
Confidence 34455554 677777887776 78 788999999999998 4 5666544 334445566777666555555
Q ss_pred HHHHhhHHHHHHHhcCCHHHHHHHhHHHhccc----ceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeecCCC
Q 017765 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNST 210 (366)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~----~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~lnG~K~~is~a~ 210 (366)
+.++. .+..+|..+|+++|+ +|||++.+|+ .++|+++|||++|||+.+++|+|+++ +|+|+|||+|+|+|++
T Consensus 113 ~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a- 189 (418)
T cd01154 113 LTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP- 189 (418)
T ss_pred HHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-
Confidence 54554 467889999998875 6999999997 89999999999999999999999999 8999999999999999
Q ss_pred CCCEEEEEEEeCCC----CCeeEEEEeCCCC-----CeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHH
Q 017765 211 FADVLVIFARNTTT----NQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (366)
Q Consensus 211 ~Ad~~~v~a~~~~~----~~~~~flV~~~~p-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~ 280 (366)
.||+++|+||++++ .++++|+||++.| ||++.+.|+++|++++++++|.|+||+ ++++|.. .++...
T Consensus 190 ~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~ 266 (418)
T cd01154 190 LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYI 266 (418)
T ss_pred ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHH
Confidence 99999999998642 5799999999875 999999999999999999999999983 6788875 688888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 281 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
...++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++++++.++.+
T Consensus 267 ~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~ 340 (418)
T cd01154 267 LEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRA 340 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999874
No 33
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-43 Score=342.42 Aligned_cols=246 Identities=23% Similarity=0.270 Sum_probs=220.9
Q ss_pred HHHhc-CCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeE
Q 017765 94 KLGAL-RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (366)
Q Consensus 94 ~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~ 171 (366)
.++++ ||+++.+ ++|||.|+++.+++.++|++++.+.+.+..+..|..++...|..+|+++||++|||++.+|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 47799 9999987 999999999999999999999988776655556665666788889999999999999999999999
Q ss_pred EEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeecCCCCCCEEEEEEEeCC----------CCCeeEEEEeCCCCCeE
Q 017765 172 WALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLT 240 (366)
Q Consensus 172 ~a~tEp~~Gsd~~~~~t~A~~~-~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~----------~~~~~~flV~~~~pGv~ 240 (366)
+|++| +.|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++++|+||.+.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 5589999999976 8999999999999742 13689999999999999
Q ss_pred EecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 017765 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP 319 (366)
Q Consensus 241 ~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~p 319 (366)
+.+ ++|+|||| |.+++||.. +|++..+..++.+|+.+++.++|+++++++.+++|++
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-------- 273 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-------- 273 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 863 59999997 999999875 6888889999999999999999999999999999986
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChhccccccC
Q 017765 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-MTPGHASLGKV 366 (366)
Q Consensus 320 i~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~-~~~~~a~~aK~ 366 (366)
+|.||++|++|.++++++|++++++++.+|++. +...+++|+|+
T Consensus 274 ---~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~ 318 (520)
T PTZ00457 274 ---EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSA 318 (520)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 489999999999999999999999999999984 46788999985
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=9.3e-43 Score=328.09 Aligned_cols=265 Identities=35% Similarity=0.533 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHHHHccCCchhHHHH
Q 017765 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (366)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~ 137 (366)
++.++++.+++|+.+++.+.....+. ++...|+.+.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 57889999999999988887775554 344456666777766
Q ss_pred HHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEE
Q 017765 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (366)
Q Consensus 138 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 217 (366)
++..+|..+|+++|+++||+.+.+|+.++|+++|||++|||...+.+++++++|||+|||+|+|+|++..|||++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 3445677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHH
Q 017765 218 FARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (366)
Q Consensus 218 ~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (366)
+++++++ .++.+|+||.+.||+++.+.|+++|+++++++.+.|+||+||++++++.. .++......+...++.++
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9998642 46889999999999999999999999999999999999999999999875 456677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-Chhcccccc
Q 017765 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGK 365 (366)
Q Consensus 293 a~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~-~~~~a~~aK 365 (366)
+.++|+++++++.+++|+++|+|||+|+.++|.+|++|++|.+.+++++++++++++.++.+.. ....++++|
T Consensus 199 a~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k 272 (327)
T cd00567 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAK 272 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988754 334445554
No 35
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-44 Score=357.83 Aligned_cols=226 Identities=23% Similarity=0.362 Sum_probs=203.8
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----e
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G 201 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G 201 (366)
+++....+.+|.+++...|..+||++||++|||++.+|+.++|+|+|||++|||+.+++|||+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 33444455677777778899999999999999999999999999999999999999999999996 6889998 9
Q ss_pred eeeeecC-CCCCCEEEEEEEeCC---CCCeeEEEEeCC-------CCCeEEecccCcccccccceeeEEEcceeeCCCCc
Q 017765 202 QKRWIGN-STFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (366)
Q Consensus 202 ~K~~is~-a~~Ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~ 270 (366)
+|+||+| +..||+++|+||+.. +.|++.|+||.+ .|||++.++++++|+++++++.|.||||+||++++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 688999999999853 268999999942 59999999999999999999999999999999999
Q ss_pred ccC------CC-----C-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC------CccchhhHHHHHHH
Q 017765 271 LPG------VN-----S-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA------PLAAFQINQQKLVQ 332 (366)
Q Consensus 271 l~~------~~-----~-~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~------pi~~~q~vq~~La~ 332 (366)
|+. .+ + ++.....+..+|+.+++.++|++++|++++++|+++|+|||+ ||++||.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 974 11 3 667778888999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 017765 333 MLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 333 ~~~~l~a~r~~~~~~a~~~d~g 354 (366)
|.+++++++++++++++.++++
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~ 349 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDN 349 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998863
No 36
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=2.4e-43 Score=354.36 Aligned_cols=234 Identities=26% Similarity=0.344 Sum_probs=212.8
Q ss_pred CHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe
Q 017765 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (366)
Q Consensus 114 ~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~ 193 (366)
++.+...+.|++++.|++++..+.+|..+++..|..+||++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788899999999998887777788888888999999999999999999999999999999999999999999999999
Q ss_pred C--CEEEEe-----eeeeeecCCC-CCCEEEEEEEeCC---CCCeeEEEEeCC-------CCCeEEecccCcccccccce
Q 017765 194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (366)
Q Consensus 194 ~--~g~~ln-----G~K~~is~a~-~Ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~~~~~~~~~G~r~~~~ 255 (366)
+ |+|+|| |+|+||+|+. .|++++|+|++.. +.|+++|+||.+ .|||++.++++|+|++++++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 899999 9999999975 5999999999742 368999999964 39999999999999999999
Q ss_pred eeEEEcceeeCCCCcccC----------------C-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 017765 256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA 318 (366)
Q Consensus 256 ~~v~f~~v~vp~~~~l~~----------------~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~ 318 (366)
+.|.||||+||++++|+. + .++..+...+..+|+.+++.++|.++++++++++|++.|+|||+
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999974 1 34566778888999999999999999999999999999999999
Q ss_pred C-------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017765 319 P-------LAAFQINQQKLVQMLGNIQAMILVGWRL 347 (366)
Q Consensus 319 p-------i~~~q~vq~~La~~~~~l~a~r~~~~~~ 347 (366)
| |++||.+|++|++|.+.+++++......
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l 355 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSL 355 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999887554443
No 37
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.1e-42 Score=333.15 Aligned_cols=272 Identities=17% Similarity=0.151 Sum_probs=232.2
Q ss_pred HHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHH
Q 017765 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (366)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~ 144 (366)
++++.+. +.+.+.++|+.+.||.++|+.|++.||+++.+ ++|||.|+++.+...++|++++.|+|+++.+..+. ...
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~ 80 (370)
T cd01159 3 AEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THS 80 (370)
T ss_pred HHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHH
Confidence 4455554 77888889999999999999999999999977 99999999999999999999999999887655443 455
Q ss_pred HHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCC
Q 017765 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224 (366)
Q Consensus 145 ~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~ 224 (366)
..+..+++++|++.|++.. .+ .. ++...+.|+|++++|||+|||+|.|||++..+||++|.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~--~~----------~g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~ 147 (370)
T cd01159 81 RMLAAFPPEAQEEVWGDGP-DT--LL----------AGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDD 147 (370)
T ss_pred HHHHhCCHHHHHHHhCCCC-Cc--eE----------EeeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCC
Confidence 6778889999999887632 11 11 11134578999999999999999999999999999999997532
Q ss_pred ---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCC-------CHH---HHHHHHHHHhHHH
Q 017765 225 ---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVLAVSRVMV 291 (366)
Q Consensus 225 ---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~-------~~~---~~~~~l~~~r~~~ 291 (366)
.++++|+||++ ||++.+.|+++||+++++++|+|+||+||++++|+..+ ++. .........|+.+
T Consensus 148 ~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 225 (370)
T cd01159 148 DGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSF 225 (370)
T ss_pred CCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHH
Confidence 46899999987 99999999999999999999999999999999997431 211 2234556788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc---CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 292 AWQPIGISMGVYDMCHRYLKERKQF---GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 292 aa~~~G~a~~al~~a~~ya~~R~qf---g~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
++.++|+++++++.+++|+++|.+| |+||+++|.+|++|++|.++++++|++++++++.+|++
T Consensus 226 aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~ 291 (370)
T cd01159 226 AAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAH 291 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 78999999999999999999999999999999999875
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-41 Score=332.62 Aligned_cols=256 Identities=19% Similarity=0.246 Sum_probs=214.4
Q ss_pred HHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhccc-
Q 017765 90 HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN- 167 (366)
Q Consensus 90 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~- 167 (366)
++++.+.+.||.++.. +++| .+. ....+......+......... +..+.+...+..+++++|+++|||++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp--~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCP--ITMTFAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhch--HHHHHHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 4566677899988866 5665 221 222222222223333322222 222345566677789999999999999997
Q ss_pred ------------ceeEEEecCCCCCCCcCCCceEEEE-eCCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEEEeC
Q 017765 168 ------------TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKK 234 (366)
Q Consensus 168 ------------~~~~~a~tEp~~Gsd~~~~~t~A~~-~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~flV~~ 234 (366)
.++++++|||++|||+..++|+|++ ++|+|+|||+|+||| ++.||+++|+||++ +|+++|+||+
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp~ 242 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVPR 242 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEEC
Confidence 4569999999999999999999999 467899999999999 58899999999996 6899999999
Q ss_pred CCC-----CeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017765 235 DAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHR 308 (366)
Q Consensus 235 ~~p-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 308 (366)
+.| ||++.+.++|+|+|++++++|.|+||. +++||.. +|+..+...++..|+..++.++|+++++++.+++
T Consensus 243 ~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~ 319 (538)
T PRK11561 243 FLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIY 319 (538)
T ss_pred CCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 799999999999999999999999993 6788876 6888899999999999999999999999999999
Q ss_pred HHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 017765 309 YLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA 355 (366)
Q Consensus 309 ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~ 355 (366)
|+++|++||+||+++|.+|++|++|.++++++|++++++++.+|.+.
T Consensus 320 yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~ 366 (538)
T PRK11561 320 HAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRA 366 (538)
T ss_pred HHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999875
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.9e-40 Score=333.77 Aligned_cols=218 Identities=28% Similarity=0.400 Sum_probs=194.4
Q ss_pred HHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe-----eeeeeecC
Q 017765 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN 208 (366)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~ 208 (366)
+.+|.++++..|..+||++|+++|||++.+|++++|||+|||++|||+.+++|||+++ +|+|+|| |+|+||+|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4567777778899999999999999999999999999999999999999999999998 6889998 99999999
Q ss_pred C-CCCCEEEEEEEeCC---CCCeeEEEEeCC-------CCCeEEecccCccc---ccccceeeEEEcceeeCCCCcccCC
Q 017765 209 S-TFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGV 274 (366)
Q Consensus 209 a-~~Ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~~~~~~~~~G---~r~~~~~~v~f~~v~vp~~~~l~~~ 274 (366)
+ ..|++++|+|++.. +.|++.|+||.+ .|||++.++++|+| +++++++.|.||||+||++++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 7 78999999999742 268999999975 89999999999999 6679999999999999999999742
Q ss_pred -----CCH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcc--c-----hhhHHHHHHHHH
Q 017765 275 -----NSF--------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLA--A-----FQINQQKLVQML 334 (366)
Q Consensus 275 -----~~~--------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~--~-----~q~vq~~La~~~ 334 (366)
+|. +.....+..+|+.+++.++|++++|++++++|+++|+|||+|++ + ||.+|++|++|.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 111 23456788899999999999999999999999999999999987 4 445599999999
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 017765 335 GNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 335 ~~l~a~r~~~~~~a~~~d~ 353 (366)
+.+++++++.+++++.+++
T Consensus 339 a~~~a~r~~~~~a~~~~~~ 357 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTD 357 (664)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=275.85 Aligned_cols=273 Identities=19% Similarity=0.236 Sum_probs=232.5
Q ss_pred HHHHhcCCccCCc----CCCCCCCCCHHHHHHHHHHHHccCCc-hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhccc
Q 017765 93 PKLGALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (366)
Q Consensus 93 ~~l~~~Gl~~~~~----~~~GG~g~~~~~~~~v~e~la~~~~s-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 167 (366)
+..+..|++.+++ ..|| .|++.++++.+.|.+++.--. -.+-.....+-.+..|..||+++||.+||-+++.|+
T Consensus 34 E~aK~eGlWNLFlp~~~qkyg-~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ 112 (392)
T KOG1469|consen 34 EMAKVEGLWNLFLPAVSQKYG-AGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGN 112 (392)
T ss_pred HHHHhcchHHhhhHHHHHhhc-cCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCC
Confidence 3345689888865 2454 899999999999999985421 111111222335668999999999999999999999
Q ss_pred ceeEEEecCCCC-CCCcCCCceEEEEeCCEEEEeeeeeeecCC--CCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCe
Q 017765 168 TIACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT-----NQINGYLVKKDAPGL 239 (366)
Q Consensus 168 ~~~~~a~tEp~~-Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a--~~Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv 239 (366)
+..|||||||+. .||..++++..++++|.|+|||+|||+||+ +.+.++++..+++.. .+.++.+||.++|||
T Consensus 113 irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGv 192 (392)
T KOG1469|consen 113 IRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGV 192 (392)
T ss_pred ceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCe
Confidence 999999999995 789999999999999999999999999998 457899999988754 457899999999999
Q ss_pred EEecccCccccccc--ceeeEEEcceeeCCCCcc-cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 017765 240 TVTKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 316 (366)
Q Consensus 240 ~~~~~~~~~G~r~~--~~~~v~f~~v~vp~~~~l-~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf 316 (366)
.|..+....|.... +..+|+|+||+||..|++ |++.||...+.-+.-+|+..|.-.+|.++++++...+.+.+|..|
T Consensus 193 kiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaF 272 (392)
T KOG1469|consen 193 KIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAF 272 (392)
T ss_pred eEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99988888887654 467999999999999876 556789888888999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhccccccC
Q 017765 317 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHASLGKV 366 (366)
Q Consensus 317 g~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~--~~~~~a~~aK~ 366 (366)
|++|..+..+.+.||+...++|.+|+++.+++..+|.-. ....+.+|.|+
T Consensus 273 gk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv 324 (392)
T KOG1469|consen 273 GKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKV 324 (392)
T ss_pred cchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeee
Confidence 999999999999999999999999999999999999833 34556777774
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-38 Score=294.09 Aligned_cols=304 Identities=25% Similarity=0.358 Sum_probs=253.2
Q ss_pred CcccCCcCCCHH--HHHHHHHHHHHHHhhc----cccH-HHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHH
Q 017765 47 DYYQFDDLLTSE--EQAVRMKVRECMEKEI----APIM-AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119 (366)
Q Consensus 47 d~~~~~~~l~~~--~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~ 119 (366)
|...|...+..| ...++..+-.+++..- .|.. ...|+.+++-...|..|.+.|.+..+..+-| . -......
T Consensus 31 dwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~~l~~~gv~~~~~~~~~-~-~~~~k~~ 108 (661)
T KOG0135|consen 31 DWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIKRLVELGVFKFWLVEDG-P-EAELKKF 108 (661)
T ss_pred CHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHHHHHHhccCcceeecCc-h-HHHHHHH
Confidence 555555555544 3456677766666532 1221 2245566677777888888888776552222 1 1355788
Q ss_pred HHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEE
Q 017765 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGW 197 (366)
Q Consensus 120 ~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~ 197 (366)
.+.|.++.+|.|++..+++|..+++..+..+||+.+++ |+..+-+-++++||||||.+||||+.+++|||++| .++|
T Consensus 109 al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~Ef 187 (661)
T KOG0135|consen 109 ALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEF 187 (661)
T ss_pred HHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCee
Confidence 89999999999999999999999999999999999998 99999999999999999999999999999999998 5889
Q ss_pred EEe-----eeeeeecCC-CCCCEEEEEEEeC---CCCCeeEEEEeCC-------CCCeEEecccCcccccccceeeEEEc
Q 017765 198 ILE-----GQKRWIGNS-TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLK 261 (366)
Q Consensus 198 ~ln-----G~K~~is~a-~~Ad~~~v~a~~~---~~~~~~~flV~~~-------~pGv~~~~~~~~~G~r~~~~~~v~f~ 261 (366)
+|| ..|+||+|+ .+|++.+|+|++- .+.|++.|||+.+ .|||+|.++.+|.|++|++||.++|+
T Consensus 188 VinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~ 267 (661)
T KOG0135|consen 188 VINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFD 267 (661)
T ss_pred EecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEe
Confidence 999 689999996 6699999999973 2478999999975 78999999999999999999999999
Q ss_pred ceeeCCCCcccCC-----C------------CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC------
Q 017765 262 KVFVPDEDRLPGV-----N------------SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA------ 318 (366)
Q Consensus 262 ~v~vp~~~~l~~~-----~------------~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~------ 318 (366)
|||||++++|... + .+......+..+|++++..++|.++-++.+|++|+..|+|||.
T Consensus 268 nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geE 347 (661)
T KOG0135|consen 268 NVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEE 347 (661)
T ss_pred cccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCc
Confidence 9999999999431 1 1234556778899999999999999999999999999999984
Q ss_pred -CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017765 319 -PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 319 -pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~ 353 (366)
||.+||..|+||-++++..++++....++...+++
T Consensus 348 v~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E 383 (661)
T KOG0135|consen 348 VPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVE 383 (661)
T ss_pred ceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999998888877776
No 42
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.94 E-value=7.3e-26 Score=217.12 Aligned_cols=222 Identities=24% Similarity=0.325 Sum_probs=186.7
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeC--CEEEEe-----eeee
Q 017765 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKR 204 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~ln-----G~K~ 204 (366)
-+..+.+|.++....|...|++||.++||++....++++|+|.||.+||+++.+++|+|+++. +.|+|| ..||
T Consensus 107 ~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KW 186 (670)
T KOG0136|consen 107 EGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKW 186 (670)
T ss_pred CCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecc
Confidence 345567888899999999999999999999999999999999999999999999999999976 679998 7999
Q ss_pred eecCC-CCCCEEEEEEEeC---CCCCeeEEEEeCC-------CCCeEEecccCcccccccceeeEEEcceeeCCCCcccC
Q 017765 205 WIGNS-TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (366)
Q Consensus 205 ~is~a-~~Ad~~~v~a~~~---~~~~~~~flV~~~-------~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~ 273 (366)
|.++. ..+.|.+|.|++- ...|++.|+||.+ .|||+++++..|||.+|++||-+-||||+||++++|-.
T Consensus 187 WPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr 266 (670)
T KOG0136|consen 187 WPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMR 266 (670)
T ss_pred cCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhh
Confidence 99985 5689999999973 2378999999974 78999999999999999999999999999999999832
Q ss_pred -----CCCH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-------CCccchhhHHHHHHHHH
Q 017765 274 -----VNSF-------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG-------APLAAFQINQQKLVQML 334 (366)
Q Consensus 274 -----~~~~-------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg-------~pi~~~q~vq~~La~~~ 334 (366)
++|. +.....+...|..+.....=....|..+|++|+..|+||. ..|.|||..|+||-+.+
T Consensus 267 ~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~L 346 (670)
T KOG0136|consen 267 HAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQL 346 (670)
T ss_pred hheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHH
Confidence 1121 2222333445666666666666788999999999999984 24899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 017765 335 GNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 335 ~~l~a~r~~~~~~a~~~d~ 353 (366)
+..++-+.......+.+..
T Consensus 347 A~ayAf~~~g~~l~~~Y~~ 365 (670)
T KOG0136|consen 347 ARAYAFRFVGEELWELYED 365 (670)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988877766666543
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.92 E-value=9.6e-24 Score=205.61 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=171.3
Q ss_pred HhcCCH--HHHHHHhHHHhcccceeEEEecCCCCC-C----CcCC--CceEE-EEeCCEEEEeeeeeeecCCCCCCEEEE
Q 017765 148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-S----DASA--LNTTA-TKVEGGWILEGQKRWIGNSTFADVLVI 217 (366)
Q Consensus 148 ~~~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~G-s----d~~~--~~t~A-~~~~~g~~lnG~K~~is~a~~Ad~~~v 217 (366)
..++++ +-..+|+..+.+.++..+-+++.|..- | .... +.... ++++|||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444544 345789999999999999999998741 1 1112 22233 4578999999999999997 9999999
Q ss_pred EEEeCCC----CC--eeEEEEeCCCCCeEEecccCccccccc-----------ceeeEEEcceeeCCCCc--ccCC---C
Q 017765 218 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV---N 275 (366)
Q Consensus 218 ~a~~~~~----~~--~~~flV~~~~pGv~~~~~~~~~G~r~~-----------~~~~v~f~~v~vp~~~~--l~~~---~ 275 (366)
++++... ++ ...|+||.++||+++....+++|.++. ..+.|.||||+||.++| ++.. +
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9987542 23 688999999999999988889998876 67999999999999999 6664 1
Q ss_pred -CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 276 -SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 276 -~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
++.. ...++..++.++|.+.+++|.++.|++. .+|+.++.++|.||++|++|.+.++++|++++++++..+.+
T Consensus 278 ~~f~~-----~~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~ 351 (477)
T TIGR02309 278 NAYAA-----TGAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKEN 351 (477)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 2211 1223666899999999999999999999 99999999999999999999999999999999999988884
Q ss_pred C-----CChhccccccC
Q 017765 355 A-----MTPGHASLGKV 366 (366)
Q Consensus 355 ~-----~~~~~a~~aK~ 366 (366)
. +...+++++|+
T Consensus 352 ~~G~~~P~~~~as~aKl 368 (477)
T TIGR02309 352 AYGLMTPDRGALDAARN 368 (477)
T ss_pred CCCcccCCHHHHHHHHH
Confidence 3 34667788774
No 44
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.80 E-value=2.2e-19 Score=142.34 Aligned_cols=112 Identities=45% Similarity=0.544 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhH
Q 017765 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCST 134 (366)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~ 134 (366)
|++++++++++++|+++++.|...++|+.+.+|+++|+++++.||+++.+ ++|||.|+++.+.+.++++++++|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 68899999999999999999999999888899999999999999999977 99999999999999999999999999988
Q ss_pred HHHHHhhHHHHHHHhcCCHHHHHHHhHHHhccc
Q 017765 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (366)
Q Consensus 135 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 167 (366)
.+.+|.++++.+|..+|+++||++|||++.+|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888888777789999999999999999999986
No 45
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.67 E-value=1.6e-16 Score=107.02 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeC
Q 017765 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (366)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 222 (366)
|+|+|||++|+|+..++|+|++++++|+|||+|+||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 46
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.34 E-value=4.3e-12 Score=105.44 Aligned_cols=92 Identities=26% Similarity=0.439 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
+||......+..+|+.+++.++|.++.+++.+.+|+++|++||+|+.++|.++++|+++.+++++++++++++++.++++
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccccccC
Q 017765 355 AMTPGHASLGKV 366 (366)
Q Consensus 355 ~~~~~~a~~aK~ 366 (366)
.....+++++|+
T Consensus 82 ~~~~~~~a~~K~ 93 (150)
T PF00441_consen 82 QNDPVEAAIAKY 93 (150)
T ss_dssp SSTHHHHHHHHH
T ss_pred cccccccchhhh
Confidence 888888888874
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.03 E-value=1.8e-08 Score=98.69 Aligned_cols=191 Identities=12% Similarity=0.134 Sum_probs=117.6
Q ss_pred HHHHHHhHHHhcccceeEEEecCCCCC-C----CcCCCceEEE-EeCCEEEEeeeeeeecCCCCCCEEEE-EEEe---CC
Q 017765 154 EQKQKYLPSLAQLNTIACWALTEPAYG-S----DASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (366)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-s----d~~~~~t~A~-~~~~g~~lnG~K~~is~a~~Ad~~~v-~a~~---~~ 223 (366)
+-..+|+..+.+.++..+-+++.|..- | .....-...+ +.++|.+|+|.|...|+++.+|.++| +.+. .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 345689999999999999999988641 1 1112233444 46789999999999999999998888 4443 12
Q ss_pred CCC-eeEEEEeCCCCCeEEecccCc--------------cccc-ccceeeEEEcceeeCCCCcccCCC-----CHHHHHH
Q 017765 224 TNQ-INGYLVKKDAPGLTVTKIENK--------------IGLR-IVQNGDILLKKVFVPDEDRLPGVN-----SFQDTSK 282 (366)
Q Consensus 224 ~~~-~~~flV~~~~pGv~~~~~~~~--------------~G~r-~~~~~~v~f~~v~vp~~~~l~~~~-----~~~~~~~ 282 (366)
+.. -..|.||.++||+++.-.... +.-| +-.-+-|.||||+||.++|+--.+ .+.....
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~ 295 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGG 295 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhh
Confidence 333 356899999999998622111 1101 112367889999999999983322 1111111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCK 349 (366)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~ 349 (366)
...+.-.......++-++-.+-.+..-+.. .-+.++|.||.+|++|....|.++++...+..
T Consensus 296 ~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~ 357 (519)
T TIGR02310 296 FARLFPMQACTRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAG 357 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111111122222222222111111 12568999999999999999999998877664
No 48
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=1.9e-08 Score=95.51 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=123.3
Q ss_pred cCCH--HHHHHHhHHHhcccceeEEEecCCCCC-----CCcC--CCceEEEE-eCCEEEEeeeeeeecCCCCCCEEEEE-
Q 017765 150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-----SDAS--ALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIF- 218 (366)
Q Consensus 150 ~g~~--~q~~~~l~~l~~g~~~~~~a~tEp~~G-----sd~~--~~~t~A~~-~~~g~~lnG~K~~is~a~~Ad~~~v~- 218 (366)
++++ +-..+|+..+...++..+-|+|.|..- +... .+-...+. .+||.++.|-|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4454 345689999999999999999998642 1122 23344443 67999999999999999999998888
Q ss_pred EEe--CCCCC-eeEEEEeCCCCCeEEeccc---Ccccccccc------------eeeEEEcceeeCCCCcccCCC-----
Q 017765 219 ARN--TTTNQ-INGYLVKKDAPGLTVTKIE---NKIGLRIVQ------------NGDILLKKVFVPDEDRLPGVN----- 275 (366)
Q Consensus 219 a~~--~~~~~-~~~flV~~~~pGv~~~~~~---~~~G~r~~~------------~~~v~f~~v~vp~~~~l~~~~----- 275 (366)
.+. .++.. -..|.+|.++||+.+.-.. ..-|+.+.+ -+-|.||||+||.++++--.+
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~ 284 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAY 284 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHH
Confidence 332 22223 4579999999999874222 222222222 234999999999999983321
Q ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE 352 (366)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d 352 (366)
.+.....+..+.|...+..-.+-..-.+-.+..-+ +. --+.+|+.||.+|+||.+-.+.+.++...++....
T Consensus 285 ~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~--~~---~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~ 356 (493)
T COG2368 285 AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIA--ET---NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQ 356 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH--Hh---hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11111112222222222222222221111111111 11 12578999999999999999999999887776443
No 49
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.52 E-value=1.1e-06 Score=79.02 Aligned_cols=118 Identities=19% Similarity=0.322 Sum_probs=75.3
Q ss_pred HHHHHHhHHHhcccceeEEEecCCCC--CCCc----CCCceEEEE-eCCEEEEeeeeeeecCCCCCCEEEEEEEeC---C
Q 017765 154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNT---T 223 (366)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~--Gsd~----~~~~t~A~~-~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~---~ 223 (366)
+-..+|+..+.+.++..+.+++.|.. +... ..+....+. ..+|.+|+|-|...|+++.+|.++|+-... +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 34467889999999999999999974 2111 123444444 679999999999999999999999985432 1
Q ss_pred C-CCeeEEEEeCCCCCeEEecccCccccc------------ccceeeEEEcceeeCCCCcc
Q 017765 224 T-NQINGYLVKKDAPGLTVTKIENKIGLR------------IVQNGDILLKKVFVPDEDRL 271 (366)
Q Consensus 224 ~-~~~~~flV~~~~pGv~~~~~~~~~G~r------------~~~~~~v~f~~v~vp~~~~l 271 (366)
+ +--..|.||.++||+++.-.......+ +-.-+-|.||||+||.++|+
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 1 224679999999999986332221111 11236789999999999875
No 50
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=98.39 E-value=2.2e-06 Score=69.79 Aligned_cols=64 Identities=27% Similarity=0.272 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 289 VMVAWQPIGISMGVYDMCHRYLKERKQ--FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE 352 (366)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~ya~~R~q--fg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d 352 (366)
+.+++.++|+++++++.+++|++.|.. .+.++.+.|.+|.+|+++.+.+++++++++++++.++
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~ 66 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLW 66 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999987 7889999999999999999999999999999999854
No 51
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=94.69 E-value=0.024 Score=45.39 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=28.9
Q ss_pred HHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccce
Q 017765 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (366)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~ 169 (366)
+.+|.++...+|...||+||+++|||+..+.+++
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 4589999999999999999999999999887753
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=74.33 E-value=12 Score=37.58 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017765 303 YDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT 357 (366)
Q Consensus 303 l~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~ 357 (366)
+..+++|...| +|+.|.+.|.+..||+++.+++++|-+.+-++...+..+.+.
T Consensus 418 ~~~~v~~~~~~--~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~ 470 (520)
T PTZ00457 418 FGNAVEATFVR--SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPS 470 (520)
T ss_pred HHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 33344444443 468899999999999999999999999999998888887654
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=60.83 E-value=70 Score=27.84 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=27.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKL 350 (366)
Q Consensus 320 i~~~q~vq~~La~~~~~l~a~r~~~~~~a~~ 350 (366)
+.++|.||.+|+|+...+|.+++++..+...
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~ 74 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAE 74 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999998866543
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=47.30 E-value=1.2e+02 Score=30.85 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017765 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT 357 (366)
Q Consensus 291 ~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~ 357 (366)
-++..+=-+-..+..+++-...+ +|+-|.+.|.+-+|||+..+.+++|-+.+-++.+.+..|-+.
T Consensus 510 ~saq~~e~~~~~~~~~Ve~ll~k--~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~ 574 (634)
T KOG0137|consen 510 DSAQKLESSLARFQQVVEKLLTK--HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPN 574 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcc
Confidence 34444444444444444444433 588999999999999999999999999999999999988553
No 55
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=47.15 E-value=67 Score=22.23 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhCCCC-----HHHHHHHHhcCCccC
Q 017765 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (366)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~Gl~~~ 103 (366)
.||+.|.++.+-+.+|..++ ..|-..++-+.-.+. ...++.|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 47899999999999998875 456666655533333 356677888887653
No 56
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=26.89 E-value=1.2e+02 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=10.2
Q ss_pred eCCEEEEeeeeee
Q 017765 193 VEGGWILEGQKRW 205 (366)
Q Consensus 193 ~~~g~~lnG~K~~ 205 (366)
+.+.|.|+|+|..
T Consensus 67 ~~~~WlV~Grrrg 79 (147)
T PF12584_consen 67 DSDNWLVSGRRRG 79 (147)
T ss_pred CCCcEEEeccCcc
Confidence 5677999998864
No 57
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=26.72 E-value=1.1e+02 Score=20.51 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=23.9
Q ss_pred EEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEEE
Q 017765 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (366)
Q Consensus 197 ~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~flV 232 (366)
|-|.|+|.||-.+++-.-+-+.-+.+...+.+.++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 447899999999999877766554433233444444
No 58
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=22.56 E-value=95 Score=21.70 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=12.7
Q ss_pred EEEEeCCEEEEeeeee
Q 017765 189 TATKVEGGWILEGQKR 204 (366)
Q Consensus 189 ~A~~~~~g~~lnG~K~ 204 (366)
.++.++|.|+|+|+..
T Consensus 25 ~v~~~~~~WiV~Gtl~ 40 (66)
T PF15631_consen 25 RVTLDGDSWIVEGTLP 40 (66)
T ss_pred EEecCCCeEEEEeecC
Confidence 5666778899999973
Done!