Query 017765
Match_columns 366
No_of_seqs 302 out of 1613
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix5_A Acyl-coenzyme A oxidase 100.0 1.5E-65 5.1E-70 498.8 37.7 332 35-366 35-366 (436)
2 3sf6_A Glutaryl-COA dehydrogen 100.0 3.7E-63 1.3E-67 478.3 34.4 319 46-366 21-340 (403)
3 3p4t_A Putative acyl-COA dehyd 100.0 3.9E-63 1.3E-67 478.1 33.2 325 42-366 13-343 (403)
4 3ii9_A Glutaryl-COA dehydrogen 100.0 1.5E-63 5.2E-68 480.1 29.8 322 45-366 9-333 (396)
5 3swo_A Glutaryl-COA dehydrogen 100.0 4.9E-63 1.7E-67 477.0 33.2 319 46-366 17-335 (399)
6 2d29_A Acyl-COA dehydrogenase; 100.0 1.4E-62 4.8E-67 472.0 35.4 317 50-366 2-327 (387)
7 2eba_A Putative glutaryl-COA d 100.0 1.7E-62 5.8E-67 471.1 34.7 319 47-366 3-323 (385)
8 3pfd_A Acyl-COA dehydrogenase; 100.0 1.3E-62 4.6E-67 473.0 30.8 319 47-366 11-335 (393)
9 1ukw_A Acyl-COA dehydrogenase; 100.0 4.1E-62 1.4E-66 467.5 33.8 315 51-366 1-320 (379)
10 2jif_A Short/branched chain sp 100.0 5.5E-62 1.9E-66 470.0 34.8 319 47-366 21-344 (404)
11 1buc_A Butyryl-COA dehydrogena 100.0 6.3E-62 2.2E-66 466.9 33.0 316 51-366 1-325 (383)
12 2dvl_A Acyl-COA dehydrogenase; 100.0 9.1E-62 3.1E-66 464.0 33.5 311 54-366 2-314 (372)
13 2vig_A Short-chain specific ac 100.0 8.3E-62 2.8E-66 467.2 32.9 316 51-366 2-322 (391)
14 3r7k_A Probable acyl COA dehyd 100.0 6.3E-62 2.1E-66 469.7 32.0 318 49-366 23-345 (403)
15 1egd_A Medium chain acyl-COA d 100.0 1.1E-61 3.7E-66 467.2 32.5 317 49-366 10-334 (396)
16 3nf4_A Acyl-COA dehydrogenase; 100.0 2.4E-61 8.2E-66 463.5 34.3 314 52-366 13-329 (387)
17 2pg0_A Acyl-COA dehydrogenase; 100.0 3.4E-61 1.2E-65 462.1 34.9 314 51-366 5-327 (385)
18 1siq_A GCD, glutaryl-COA dehyd 100.0 2.2E-61 7.5E-66 464.5 33.6 319 47-366 6-326 (392)
19 1ivh_A Isovaleryl-COA dehydrog 100.0 2.1E-61 7.3E-66 464.8 31.7 314 53-366 11-333 (394)
20 1rx0_A Acyl-COA dehydrogenase 100.0 1.5E-60 5E-65 458.7 35.4 315 51-366 15-334 (393)
21 3mpi_A Glutaryl-COA dehydrogen 100.0 2.2E-60 7.6E-65 458.3 28.3 314 51-366 1-325 (397)
22 4hr3_A Putative acyl-COA dehyd 100.0 1.5E-60 5.2E-65 461.9 26.8 319 48-366 2-352 (415)
23 1r2j_A Protein FKBI; polyketid 100.0 5.7E-60 1.9E-64 450.6 28.2 300 64-366 2-305 (366)
24 3owa_A Acyl-COA dehydrogenase; 100.0 1.7E-59 5.7E-64 470.8 29.9 306 48-355 26-336 (597)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 1.8E-58 6.2E-63 463.3 30.9 299 54-354 27-330 (577)
26 3mkh_A Nitroalkane oxidase; ox 100.0 2E-57 6.8E-62 443.0 27.1 315 50-366 2-357 (438)
27 2uxw_A VERY-long-chain specifi 100.0 8.3E-57 2.8E-61 452.5 31.9 317 48-366 39-372 (607)
28 2wbi_A Acyl-COA dehydrogenase 100.0 1.3E-57 4.5E-62 442.8 23.9 318 47-366 15-360 (428)
29 2c12_A Nitroalkane oxidase; ox 100.0 9.6E-57 3.3E-61 438.3 28.8 315 51-366 2-360 (439)
30 3m9v_A FAD-dependent oxidoredu 100.0 2.1E-52 7.1E-57 407.7 26.2 296 47-353 12-320 (439)
31 3mxl_A Nitrososynthase; flavin 100.0 7.6E-53 2.6E-57 405.5 22.3 293 50-353 4-309 (395)
32 2or0_A Hydroxylase; APC7385, r 100.0 1.6E-52 5.4E-57 405.6 23.0 299 50-365 13-341 (414)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 7.4E-51 2.5E-55 391.5 25.8 288 61-365 11-326 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 1.3E-50 4.3E-55 393.1 24.0 288 61-365 39-354 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 9.6E-48 3.3E-52 390.3 19.6 297 47-352 17-356 (659)
36 2ddh_A Acyl-COA oxidase; beta 100.0 6.9E-44 2.4E-48 361.5 24.7 294 47-353 15-354 (661)
37 3djl_A Protein AIDB; alpha hel 100.0 1.1E-43 3.7E-48 352.1 21.6 256 89-356 89-367 (541)
38 1u8v_A Gamma-aminobutyrate met 100.0 6.5E-35 2.2E-39 285.9 20.6 216 145-366 118-371 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 5.8E-35 2E-39 285.9 19.6 208 152-366 122-363 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 3.2E-32 1.1E-36 266.4 17.8 210 150-366 127-367 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 1.1E-23 3.9E-28 206.3 17.5 207 154-365 134-367 (517)
42 3owa_A Acyl-COA dehydrogenase; 71.0 11 0.00038 37.2 8.1 57 299-357 467-524 (597)
43 2uxw_A VERY-long-chain specifi 34.8 1.2E+02 0.004 29.9 8.4 42 316-357 506-547 (607)
No 1
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=1.5e-65 Score=498.81 Aligned_cols=332 Identities=85% Similarity=1.364 Sum_probs=310.7
Q ss_pred CCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCC
Q 017765 35 ATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114 (366)
Q Consensus 35 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~ 114 (366)
.+..+.+|+...|++.|++.++++|+++++.+++|+++++.|...+.++.+.+|.++|++|+++||+++.+++|||.|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~ 114 (436)
T 2ix5_A 35 ATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLS 114 (436)
T ss_dssp SCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCC
T ss_pred cCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCC
Confidence 34456778888899999999999999999999999999898888777778899999999999999999976799999999
Q ss_pred HHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeC
Q 017765 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE 194 (366)
Q Consensus 115 ~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~ 194 (366)
+.+...++|+++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++
T Consensus 115 ~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~g 194 (436)
T 2ix5_A 115 ITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVE 194 (436)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred HHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeC
Confidence 99999999999999999887777777677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC
Q 017765 195 GGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274 (366)
Q Consensus 195 ~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~ 274 (366)
|||+|||+|.||||+..|||++|+|++++++++++|+||.+.||+++.+.|+++|++++++++|+||||+||++++++..
T Consensus 195 dg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~ 274 (436)
T 2ix5_A 195 GGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV 274 (436)
T ss_dssp TEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC
T ss_pred CEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc
Confidence 99999999999999999999999999875467999999999999999999999999999999999999999999999877
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
+++......+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++
T Consensus 275 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g 354 (436)
T 2ix5_A 275 NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETG 354 (436)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78888888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhccccccC
Q 017765 355 AMTPGHASLGKV 366 (366)
Q Consensus 355 ~~~~~~a~~aK~ 366 (366)
.+...+++++|+
T Consensus 355 ~~~~~~as~aK~ 366 (436)
T 2ix5_A 355 QMTPGQASLGKA 366 (436)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 776677888873
No 2
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.7e-63 Score=478.32 Aligned_cols=319 Identities=34% Similarity=0.620 Sum_probs=303.8
Q ss_pred CCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHH
Q 017765 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAE 124 (366)
Q Consensus 46 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~ 124 (366)
.|+..|++.++++|+++++.+++|+++++.|...+.++.+.+| .++|++|++.||+++.+++|||.|+++.+.+.++|+
T Consensus 21 ~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~ee 100 (403)
T 3sf6_A 21 DDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLE 100 (403)
T ss_dssp HHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHHH
T ss_pred cchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHHH
Confidence 3667899999999999999999999999999988889999999 999999999999999449999999999999999999
Q ss_pred HHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeee
Q 017765 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (366)
Q Consensus 125 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 204 (366)
++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|++++|||+|||+|.
T Consensus 101 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 180 (403)
T 3sf6_A 101 LEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKM 180 (403)
T ss_dssp HHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred HHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEE
Confidence 99999998888888877778889999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHHHHH
Q 017765 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (366)
Q Consensus 205 ~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~l 284 (366)
||||+..||+++|+|+++ +|+++|+||++.|||++.+.|+++|+|++++++|+||||+||++++|+..+++......+
T Consensus 181 ~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l 258 (403)
T 3sf6_A 181 WITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAPLRCL 258 (403)
T ss_dssp EEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred eecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHHHHHHHH
Confidence 999999999999999986 579999999999999999999999999999999999999999999998877888889999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~a 364 (366)
..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+++++
T Consensus 259 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 338 (403)
T 3sf6_A 259 NEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLG 338 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877788888
Q ss_pred cC
Q 017765 365 KV 366 (366)
Q Consensus 365 K~ 366 (366)
|+
T Consensus 339 K~ 340 (403)
T 3sf6_A 339 KL 340 (403)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 3
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=3.9e-63 Score=478.13 Aligned_cols=325 Identities=22% Similarity=0.282 Sum_probs=298.2
Q ss_pred CCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHH
Q 017765 42 PPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAI 120 (366)
Q Consensus 42 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~ 120 (366)
.+...++..|++.++++|+++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.
T Consensus 13 ~~~~~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~ 92 (403)
T 3p4t_A 13 EAQTQGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVV 92 (403)
T ss_dssp ----------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHH
T ss_pred hhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHH
Confidence 3345678889999999999999999999999999998889999999999999999999999977 999999999999999
Q ss_pred HHHHHHccCCch-hHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEE
Q 017765 121 AIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 199 (366)
Q Consensus 121 v~e~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~l 199 (366)
++|+++++|+++ ++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++|||+|
T Consensus 93 v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~l 172 (403)
T 3p4t_A 93 ICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVI 172 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEE
T ss_pred HHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEE
Confidence 999999999998 7777777667778899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CC
Q 017765 200 EGQKRWIGNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NS 276 (366)
Q Consensus 200 nG~K~~is~a~~Ad~~~v~a~~~~~--~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~ 276 (366)
||+|.||||+..||+++|+|+++++ +++++|+||.+.|||++.+.|+++|++++++++|+||||+||++++|+.. ++
T Consensus 173 nG~K~~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g 252 (403)
T 3p4t_A 173 NGAKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTG 252 (403)
T ss_dssp EEEEEEEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCH
T ss_pred EEEEEEecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCch
Confidence 9999999999999999999998653 57899999999999999999999999999999999999999999999876 56
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017765 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM 356 (366)
Q Consensus 277 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~ 356 (366)
+......+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+
T Consensus 253 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~ 332 (403)
T 3p4t_A 253 FAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGET 332 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C-hhccccccC
Q 017765 357 T-PGHASLGKV 366 (366)
Q Consensus 357 ~-~~~a~~aK~ 366 (366)
. ..+++++|+
T Consensus 333 ~~~~~~~~aK~ 343 (403)
T 3p4t_A 333 NLIAEVCFAKN 343 (403)
T ss_dssp CCHHHHHHHHH
T ss_pred CchhHHHHHHH
Confidence 6 677888773
No 4
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=1.5e-63 Score=480.06 Aligned_cols=322 Identities=34% Similarity=0.569 Sum_probs=298.2
Q ss_pred CCCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHH
Q 017765 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (366)
Q Consensus 45 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (366)
+.|++.|++.++++|+++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|
T Consensus 9 ~~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e 88 (396)
T 3ii9_A 9 WDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAR 88 (396)
T ss_dssp TTSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHH
T ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 4688999999999999999999999999899988888899999999999999999999977 999999999999999999
Q ss_pred HHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeee
Q 017765 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (366)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K 203 (366)
+++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|++++|||+|||+|
T Consensus 89 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K 168 (396)
T 3ii9_A 89 EVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 168 (396)
T ss_dssp HHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEE
T ss_pred HHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEE
Confidence 99999999888777776666677899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHH
Q 017765 204 RWIGNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS 281 (366)
Q Consensus 204 ~~is~a~~Ad~~~v~a~~~~~--~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~ 281 (366)
.||||+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++++..+++....
T Consensus 169 ~~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~ 248 (396)
T 3ii9_A 169 MWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPF 248 (396)
T ss_dssp EEEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHH
T ss_pred EeECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHH
Confidence 999999999999999998522 358999999999999999999999999999999999999999999998777888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcc
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a 361 (366)
..+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...++
T Consensus 249 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~ 328 (396)
T 3ii9_A 249 TCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEIT 328 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777778
Q ss_pred ccccC
Q 017765 362 SLGKV 366 (366)
Q Consensus 362 ~~aK~ 366 (366)
+++|+
T Consensus 329 ~~aK~ 333 (396)
T 3ii9_A 329 SIMKR 333 (396)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88873
No 5
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.9e-63 Score=476.97 Aligned_cols=319 Identities=30% Similarity=0.588 Sum_probs=303.5
Q ss_pred CCcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHHH
Q 017765 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEI 125 (366)
Q Consensus 46 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~l 125 (366)
.|+++|++.++++|+++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++.+++|||.|+++.+.+.++|++
T Consensus 17 ~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eel 96 (399)
T 3swo_A 17 LELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMEL 96 (399)
T ss_dssp HHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHHH
Confidence 47788999999999999999999999999998888888999999999999999999994499999999999999999999
Q ss_pred HccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 017765 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (366)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 205 (366)
+++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|++++|||+|||+|.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 176 (399)
T 3swo_A 97 EAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMW 176 (399)
T ss_dssp HHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEE
T ss_pred HHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEe
Confidence 99999988888788767788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHHHHHH
Q 017765 206 IGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLA 285 (366)
Q Consensus 206 is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~l~ 285 (366)
|||+..|||++|+|+++ +|+++|+||++.||+++.+.|+++|+|++++++|.||||+||++++++..+++......+.
T Consensus 177 vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l~ 254 (399)
T 3swo_A 177 ITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCLN 254 (399)
T ss_dssp EETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHHHH
T ss_pred ECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHHHH
Confidence 99999999999999986 5699999999999999999999999999999999999999999999988678888889999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 286 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+++++|
T Consensus 255 ~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK 334 (399)
T 3swo_A 255 EARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGK 334 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887777888887
Q ss_pred C
Q 017765 366 V 366 (366)
Q Consensus 366 ~ 366 (366)
+
T Consensus 335 ~ 335 (399)
T 3swo_A 335 L 335 (399)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=1.4e-62 Score=472.02 Aligned_cols=317 Identities=33% Similarity=0.485 Sum_probs=296.7
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
.|++.++++|.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 47888999999999999999998899988888888999999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecC
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 208 (366)
|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99988777777556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-------CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHH
Q 017765 209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (366)
Q Consensus 209 a~~Ad~~~v~a~~~~~-------~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~ 280 (366)
+..|||++|+|+++++ .++++|+||++.||+++.+.|+++|++++++++|+||||+||++++|+.. .++...
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 9999999999998632 36899999999999999999999999999999999999999999999875 567778
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhc
Q 017765 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360 (366)
Q Consensus 281 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~ 360 (366)
...+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+
T Consensus 242 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 321 (387)
T 2d29_A 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLE 321 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988766667
Q ss_pred cccccC
Q 017765 361 ASLGKV 366 (366)
Q Consensus 361 a~~aK~ 366 (366)
++++|+
T Consensus 322 ~~~aK~ 327 (387)
T 2d29_A 322 AAQAKL 327 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777773
No 7
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-62 Score=471.12 Aligned_cols=319 Identities=37% Similarity=0.665 Sum_probs=295.4
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (366)
|++.|++.++++|+++++.+++|+.+++.|...+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 82 (385)
T 2eba_A 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL 82 (385)
T ss_dssp CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence 56678888999999999999999998898888888888999999999999999999977 99999999999999999999
Q ss_pred HccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCc-CCCceEEEEeCCEEEEeeeee
Q 017765 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR 204 (366)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~-~~~~t~A~~~~~g~~lnG~K~ 204 (366)
+++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+ .+++|+|++++|||+|||+|.
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~ 162 (385)
T 2eba_A 83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM 162 (385)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence 9999999888877766667788999999999999999999999999999999999999 999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHHHHH
Q 017765 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (366)
Q Consensus 205 ~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~l 284 (366)
||||+..|||++|+|++++. .+++|+||.+.||+++.+.|+++|++++++++|+||||+||+++++...+++......+
T Consensus 163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l 241 (385)
T 2eba_A 163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL 241 (385)
T ss_dssp EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence 99999999999999998632 38899999999999999999999999999999999999999999994456788888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~a 364 (366)
...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+++++
T Consensus 242 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~a 321 (385)
T 2eba_A 242 TQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLA 321 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987767777787
Q ss_pred cC
Q 017765 365 KV 366 (366)
Q Consensus 365 K~ 366 (366)
|+
T Consensus 322 K~ 323 (385)
T 2eba_A 322 KR 323 (385)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 8
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.3e-62 Score=473.01 Aligned_cols=319 Identities=31% Similarity=0.418 Sum_probs=287.4
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (366)
+|..|++.++++|+++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|++
T Consensus 11 ~p~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel 90 (393)
T 3pfd_A 11 NPSFELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEV 90 (393)
T ss_dssp -----------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHH
Confidence 56678899999999999999999999999998889999999999999999999999977 99999999999999999999
Q ss_pred HccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 017765 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (366)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 205 (366)
+++|+++++.+..|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.|
T Consensus 91 a~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 169 (393)
T 3pfd_A 91 ARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCW 169 (393)
T ss_dssp HTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEE
T ss_pred HhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEE
Confidence 999999887666554 5566788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHH
Q 017765 206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (366)
Q Consensus 206 is~a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~ 281 (366)
+||+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+.. .++....
T Consensus 170 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~ 249 (393)
T 3pfd_A 170 ITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTAL 249 (393)
T ss_dssp EETTTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred ecCCcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHH
Confidence 9999999999999998643 57899999999999999999999999999999999999999999999875 5788888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-Chhc
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGH 360 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~-~~~~ 360 (366)
..+...|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|++++++++.++++.+ ...+
T Consensus 250 ~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~ 329 (393)
T 3pfd_A 250 ATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFI 329 (393)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999876 5566
Q ss_pred cccccC
Q 017765 361 ASLGKV 366 (366)
Q Consensus 361 a~~aK~ 366 (366)
++++|+
T Consensus 330 ~~~aK~ 335 (393)
T 3pfd_A 330 SAASKC 335 (393)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777773
No 9
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4.1e-62 Score=467.51 Aligned_cols=315 Identities=31% Similarity=0.476 Sum_probs=295.1
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
|++.+++++.++++.+++|+++++.|...+.|+.+.+|.++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 5677899999999999999988899988888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
+++++.+.+| .++...|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 9988777777 467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHH
Q 017765 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~ 285 (366)
..|||++|+++++++ .++++|+||.+.||+++.+.|+++|++++++++|+||||+||++++++.. .++......+.
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 239 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence 999999999998642 47899999999999999999999999999999999999999999999875 56777888889
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 286 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+++++|
T Consensus 240 ~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK 319 (379)
T 1ukw_A 240 KTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAK 319 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876667788877
Q ss_pred C
Q 017765 366 V 366 (366)
Q Consensus 366 ~ 366 (366)
+
T Consensus 320 ~ 320 (379)
T 1ukw_A 320 A 320 (379)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=5.5e-62 Score=470.05 Aligned_cols=319 Identities=30% Similarity=0.466 Sum_probs=295.6
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (366)
++..|.+.++++|.++++.+++|+++++.|...+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++
T Consensus 21 ~~~~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 100 (404)
T 2jif_A 21 QSMAPLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEEL 100 (404)
T ss_dssp ---CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHH
Confidence 45566778999999999999999999999988888888999999999999999999977 99999999999999999999
Q ss_pred HccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 017765 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (366)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 205 (366)
+++|+++++.+.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~ 179 (404)
T 2jif_A 101 AKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMW 179 (404)
T ss_dssp HTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEE
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEe
Confidence 999999888877777667788999999999999999999985 7899999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHH
Q 017765 206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (366)
Q Consensus 206 is~a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~ 281 (366)
|||+..||+++|+|+++++ .++++|+||++.||+++.+.|+++|++++++++|.||||+||++++|+.. .++....
T Consensus 180 is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 259 (404)
T 2jif_A 180 ISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAI 259 (404)
T ss_dssp EETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred ecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHH
Confidence 9999999999999998532 46899999999999999999999999999999999999999999999875 5677788
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcc
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a 361 (366)
..+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++.+...++
T Consensus 260 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~ 339 (404)
T 2jif_A 260 GSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEA 339 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999987666677
Q ss_pred ccccC
Q 017765 362 SLGKV 366 (366)
Q Consensus 362 ~~aK~ 366 (366)
+++|+
T Consensus 340 ~~aK~ 344 (404)
T 2jif_A 340 SMAKY 344 (404)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88873
No 11
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.3e-62 Score=466.91 Aligned_cols=316 Identities=30% Similarity=0.410 Sum_probs=296.2
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCC---CCHHHHHHHHHHHH
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG---HSVTGAAIAIAEIA 126 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g---~~~~~~~~v~e~la 126 (366)
|++.++++|.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.| +++.+...++|+++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 5677899999999999999998899988888889999999999999999999977 9999999 99999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeee
Q 017765 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW 205 (366)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~lnG~K~~ 205 (366)
++|+++++.+.+|..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 9999988877777656778899999999999999999999999999999999999999999999999 999999999999
Q ss_pred ecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHH
Q 017765 206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (366)
Q Consensus 206 is~a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~ 281 (366)
|||+..||+++|+|+++++ .++++|+||++.||+++.+.|+++|++++++++|+||||+||++++|+.. .++....
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 240 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM 240 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence 9999999999999998643 47899999999999999999999999999999999999999999999875 5677778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcc
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a 361 (366)
..+...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...++
T Consensus 241 ~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~ 320 (383)
T 1buc_A 241 MTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDA 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999987767778
Q ss_pred ccccC
Q 017765 362 SLGKV 366 (366)
Q Consensus 362 ~~aK~ 366 (366)
+++|+
T Consensus 321 ~~aK~ 325 (383)
T 1buc_A 321 AIAKR 325 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88773
No 12
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=9.1e-62 Score=464.01 Aligned_cols=311 Identities=33% Similarity=0.498 Sum_probs=292.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCch
Q 017765 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (366)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~ 132 (366)
.++++|.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+++++|+++
T Consensus 2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~ 81 (372)
T 2dvl_A 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV 81 (372)
T ss_dssp -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence 4689999999999999998888888888888999999999999999999977 999999999999999999999999998
Q ss_pred hHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCC
Q 017765 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (366)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~A 212 (366)
++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..|
T Consensus 82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A 161 (372)
T 2dvl_A 82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA 161 (372)
T ss_dssp HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence 88777775567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHH
Q 017765 213 DVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 291 (366)
Q Consensus 213 d~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~ 291 (366)
||++|+|++++ ++++|+||++.||+++.+.|+++|++++++++|.||||+||++++++.. .++......+..+|+.+
T Consensus 162 d~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 239 (372)
T 2dvl_A 162 HLYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGV 239 (372)
T ss_dssp SEEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999864 7899999999999999999999999999999999999999999999875 56777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 292 aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++.+...+++++|+
T Consensus 240 aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~ 314 (372)
T 2dvl_A 240 AAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKL 314 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998776677788773
No 13
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=8.3e-62 Score=467.18 Aligned_cols=316 Identities=31% Similarity=0.467 Sum_probs=292.8
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
|++.+++++.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++|
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 5667899999999999999998899988888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 99888877775456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHH
Q 017765 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~ 285 (366)
..|||++|+|+++++ .++++|+||.+.|||++.+.|+++|+|++++++|+||||+||++++|+.. .++......+.
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 241 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD 241 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence 999999999998632 37899999999999999999999999999999999999999999999876 56777788899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccccc
Q 017765 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (366)
Q Consensus 286 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK 365 (366)
.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++.+...+++++|
T Consensus 242 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 321 (391)
T 2vig_A 242 MGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAK 321 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876666777777
Q ss_pred C
Q 017765 366 V 366 (366)
Q Consensus 366 ~ 366 (366)
+
T Consensus 322 ~ 322 (391)
T 2vig_A 322 L 322 (391)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=6.3e-62 Score=469.73 Aligned_cols=318 Identities=22% Similarity=0.331 Sum_probs=297.3
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHc
Q 017765 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIAR 127 (366)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~ 127 (366)
..++..++++|+++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|++++
T Consensus 23 ~~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~ 102 (403)
T 3r7k_A 23 VAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILA 102 (403)
T ss_dssp --CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 445667899999999999999999999998888999999999999999999999977 9999999999999999999999
Q ss_pred c-CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeee
Q 017765 128 V-DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (366)
Q Consensus 128 ~-~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 206 (366)
+ |+++++.+.++..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++|||+|||+|.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~v 182 (403)
T 3r7k_A 103 AGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFI 182 (403)
T ss_dssp TTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEE
T ss_pred cCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcc
Confidence 8 888877776566677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHH
Q 017765 207 GNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (366)
Q Consensus 207 s~a~~Ad~~~v~a~~~~~--~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~ 283 (366)
||+..|||++|+++++++ .++++|+||.+.|||++.+.|+++|++++++++|+||||+||++++++.. +++......
T Consensus 183 s~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 262 (403)
T 3r7k_A 183 TSGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQ 262 (403)
T ss_dssp ETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred cCCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHH
Confidence 999999999999998652 47899999999999999999999999999999999999999999999876 568888889
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccc
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~ 363 (366)
+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|++++++++.+|++.+...++++
T Consensus 263 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~ 342 (403)
T 3r7k_A 263 FQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSM 342 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877777888
Q ss_pred ccC
Q 017765 364 GKV 366 (366)
Q Consensus 364 aK~ 366 (366)
+|+
T Consensus 343 aK~ 345 (403)
T 3r7k_A 343 AKN 345 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 15
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.1e-61 Score=467.17 Aligned_cols=317 Identities=27% Similarity=0.402 Sum_probs=295.6
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHc
Q 017765 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIAR 127 (366)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~ 127 (366)
..|++.+++++.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|++++
T Consensus 10 ~~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~ 89 (396)
T 1egd_A 10 LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAY 89 (396)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHh
Confidence 357888999999999999999998898888888888999999999999999999977 9999999999999999999999
Q ss_pred cCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeec
Q 017765 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (366)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is 207 (366)
+|+++++.+ .|..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus 90 ~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 168 (396)
T 1egd_A 90 GCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWIT 168 (396)
T ss_dssp HCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred hCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEccc
Confidence 999988776 6666666778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC------CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHH
Q 017765 208 NSTFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (366)
Q Consensus 208 ~a~~Ad~~~v~a~~~~~------~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~ 280 (366)
|+..|||++|+|+++++ .++++|+||.+.|||++.+.|+++|++++++++|+||||+||++++|+.. .++...
T Consensus 169 ~~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~ 248 (396)
T 1egd_A 169 NGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248 (396)
T ss_dssp TTTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHH
T ss_pred CCcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHH
Confidence 99999999999998643 46889999999999999999999999999999999999999999999875 567778
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhc
Q 017765 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360 (366)
Q Consensus 281 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~ 360 (366)
...+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+
T Consensus 249 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 328 (396)
T 1egd_A 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYY 328 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988766667
Q ss_pred cccccC
Q 017765 361 ASLGKV 366 (366)
Q Consensus 361 a~~aK~ 366 (366)
++++|+
T Consensus 329 ~~~aK~ 334 (396)
T 1egd_A 329 ASIAKA 334 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 787773
No 16
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=2.4e-61 Score=463.50 Aligned_cols=314 Identities=27% Similarity=0.384 Sum_probs=289.5
Q ss_pred CcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCC
Q 017765 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (366)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~ 130 (366)
++.++++++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++|+
T Consensus 13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~ 92 (387)
T 3nf4_A 13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA 92 (387)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 567899999999999999999899998889999999999999999999999977 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCC
Q 017765 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (366)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~ 210 (366)
++++.+..|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus 93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (387)
T 3nf4_A 93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171 (387)
T ss_dssp HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence 9988877775 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC-CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHh
Q 017765 211 FADVLVIFARNTT-TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (366)
Q Consensus 211 ~Ad~~~v~a~~~~-~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r 288 (366)
.||+++|+|++++ .+++++|+||.+.|||++.+.|+++|++++++++|+||||+||++++++.. .++......+..+|
T Consensus 172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 251 (387)
T 3nf4_A 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR 251 (387)
T ss_dssp TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 9999999999863 367999999999999999999999999999999999999999999999876 56788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccccC
Q 017765 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKV 366 (366)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~aK~ 366 (366)
+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...+++++|+
T Consensus 252 ~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~aK~ 329 (387)
T 3nf4_A 252 LGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKL 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998777777888873
No 17
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=3.4e-61 Score=462.09 Aligned_cols=314 Identities=25% Similarity=0.350 Sum_probs=291.9
Q ss_pred CC-cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 51 FD-DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 51 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
|+ +.++++|.++++.+++|+.+++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 84 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV 84 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 44 66899999999999999999899988888888999999999999999999977 99999999999999999999999
Q ss_pred C-CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeec
Q 017765 129 D-ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (366)
Q Consensus 129 ~-~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is 207 (366)
| +++++.+ |..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus 85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 162 (385)
T 2pg0_A 85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT 162 (385)
T ss_dssp CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence 9 8877654 555667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHH
Q 017765 208 NSTFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (366)
Q Consensus 208 ~a~~Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~ 281 (366)
|+..|||++|+|+++++ .++++|+||++.||+++.+.|+++|++++++++|+||||+||++++|+.. .++....
T Consensus 163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 242 (385)
T 2pg0_A 163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM 242 (385)
T ss_dssp TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999998632 26899999999999999999999999999999999999999999999875 5677788
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcc
Q 017765 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (366)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a 361 (366)
..+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+...++
T Consensus 243 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~ 322 (385)
T 2pg0_A 243 EKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEV 322 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999987667778
Q ss_pred ccccC
Q 017765 362 SLGKV 366 (366)
Q Consensus 362 ~~aK~ 366 (366)
+++|+
T Consensus 323 ~~aK~ 327 (385)
T 2pg0_A 323 SMAKW 327 (385)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88773
No 18
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=2.2e-61 Score=464.46 Aligned_cols=319 Identities=36% Similarity=0.549 Sum_probs=296.9
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la 126 (366)
|++.|++.++++|+++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+++|||.|+++.+...++|+++
T Consensus 6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~eel~ 85 (392)
T 1siq_A 6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELE 85 (392)
T ss_dssp STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHHHH
Confidence 66778889999999999999999998888888788888899999999999999999955999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeeee
Q 017765 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKR 204 (366)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~lnG~K~ 204 (366)
++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|||+|||+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~ 165 (392)
T 1siq_A 86 RVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT 165 (392)
T ss_dssp TTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEE
T ss_pred HhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEE
Confidence 9999888766666555667788999999999999999999999999999999999999999999999 99999999999
Q ss_pred eecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCCCCHHHHHHHH
Q 017765 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (366)
Q Consensus 205 ~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~l 284 (366)
||||+..|||++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|+||||+||++++++..+++......+
T Consensus 166 ~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l 244 (392)
T 1siq_A 166 WITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCL 244 (392)
T ss_dssp EEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHHH
T ss_pred eecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHHH
Confidence 9999999999999999863 358999999999999999999999999999999999999999999998777787778888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhccccc
Q 017765 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (366)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~a 364 (366)
...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+....++++
T Consensus 245 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~~~~~~a 324 (392)
T 1siq_A 245 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLL 324 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766677777
Q ss_pred cC
Q 017765 365 KV 366 (366)
Q Consensus 365 K~ 366 (366)
|+
T Consensus 325 K~ 326 (392)
T 1siq_A 325 KR 326 (392)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 19
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.1e-61 Score=464.78 Aligned_cols=314 Identities=27% Similarity=0.420 Sum_probs=294.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCH--HHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
+.+++++.++++.+++|+++++.|...+.++.+.+|. ++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++|
T Consensus 11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 90 (394)
T 1ivh_A 11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS 90 (394)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence 5689999999999999999889998888888899999 9999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~ 170 (394)
T 1ivh_A 91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence 99988887776567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC-----CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHH
Q 017765 210 TFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~ 283 (366)
..|||++|+|+++++ .++++|+||.+.|||++.+.|+++|++++++++|+||||+||++++++.. .++......
T Consensus 171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 250 (394)
T 1ivh_A 171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSG 250 (394)
T ss_dssp GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHH
T ss_pred CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHH
Confidence 999999999998643 36899999999999999999999999999999999999999999999875 567778888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhcccc
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~~~~a~~ 363 (366)
+...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++.+...++++
T Consensus 251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~ 330 (394)
T 1ivh_A 251 LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAG 330 (394)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998776677777
Q ss_pred ccC
Q 017765 364 GKV 366 (366)
Q Consensus 364 aK~ 366 (366)
+|+
T Consensus 331 aK~ 333 (394)
T 1ivh_A 331 VIL 333 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 20
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.5e-60 Score=458.69 Aligned_cols=315 Identities=28% Similarity=0.385 Sum_probs=292.1
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccC
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~ 129 (366)
|++.++++|+++++.+++|+.+++.|...++|+.+.+|.++|++|+++||+++.+ ++|||.|+++.+.+.++|+++++|
T Consensus 15 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 1rx0_A 15 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGC 94 (393)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 4566899999999999999999998888888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCC
Q 017765 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (366)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 209 (366)
+++++.+..|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 95 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 173 (393)
T 1rx0_A 95 TSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGA 173 (393)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCC
Confidence 98887777765 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC--CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHH
Q 017765 210 TFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~--~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~ 286 (366)
..||+++|+++++++ .++++|+||.+.||+++.+.++++|++++++++|+||||+||++++|+.. .++......+..
T Consensus 174 ~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~ 253 (393)
T 1rx0_A 174 GESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNG 253 (393)
T ss_dssp TTCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHH
Confidence 999999999998642 46899999999999999999999999999999999999999999999875 567777888889
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-Chhcccccc
Q 017765 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGK 365 (366)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~-~~~~a~~aK 365 (366)
+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+ ...+++++|
T Consensus 254 ~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~aK 333 (393)
T 1rx0_A 254 GRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAK 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754 345677777
Q ss_pred C
Q 017765 366 V 366 (366)
Q Consensus 366 ~ 366 (366)
+
T Consensus 334 ~ 334 (393)
T 1rx0_A 334 L 334 (393)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=2.2e-60 Score=458.26 Aligned_cols=314 Identities=28% Similarity=0.471 Sum_probs=293.8
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCCccCCc-CCCCCCCC--CHHHHHHHHHHHH
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGH--SVTGAAIAIAEIA 126 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~--~~~~~~~v~e~la 126 (366)
|++.++++|+++++.+++|+++++.|...+.|+.+.+| .++|++|++.||+++.+ ++|||.|+ ++.+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999988899999999 99999999999999977 99999999 9999999999999
Q ss_pred ccCCchhHHHHHHhhHHHH-HHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeee
Q 017765 127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (366)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 205 (366)
++|+++++.+.+|. ++.. .|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999988887774 4555 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEeCCC---CCeeEEEE-eCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHH
Q 017765 206 IGNSTFADVLVIFARNTTT---NQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (366)
Q Consensus 206 is~a~~Ad~~~v~a~~~~~---~~~~~flV-~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~ 280 (366)
+||+..|||++|+|+++++ .++++|+| |.+.|||++ +.|+++|++++++++|.||||+||++++++.. .++...
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 9999999999999998642 47899999 999999999 99999999999999999999999999999876 567888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChh
Q 017765 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-AMTPG 359 (366)
Q Consensus 281 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g-~~~~~ 359 (366)
...+...|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++ .+...
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 318 (397)
T 3mpi_A 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGL 318 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998 55566
Q ss_pred ccccccC
Q 017765 360 HASLGKV 366 (366)
Q Consensus 360 ~a~~aK~ 366 (366)
.++++|+
T Consensus 319 ~~~~aK~ 325 (397)
T 3mpi_A 319 DVAMAKY 325 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777773
No 22
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.5e-60 Score=461.93 Aligned_cols=319 Identities=21% Similarity=0.213 Sum_probs=282.3
Q ss_pred cccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC------------------CCCHHHHHHHHhcCCccCCc-CCC
Q 017765 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGGTI-KGY 108 (366)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~Gl~~~~~-~~~ 108 (366)
|..|++.++++|+++++.+++|+++++.|...+.++.. .+|+++|++|++.||+++.+ ++|
T Consensus 2 ~~~M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~ 81 (415)
T 4hr3_A 2 PGSMDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPE 81 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHH
Confidence 45688999999999999999999998888776665433 26789999999999999977 999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCchhHHHH-HHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCC-CCCCcCCC
Q 017765 109 GCPGHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASAL 186 (366)
Q Consensus 109 GG~g~~~~~~~~v~e~la~~~~s~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~ 186 (366)
||.|+++.+.+.++|+++++|.+..+... .+...+...|..+|+++||++|||++.+|+.++|+++|||+ +|||+..+
T Consensus 82 GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~ 161 (415)
T 4hr3_A 82 LGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNM 161 (415)
T ss_dssp TSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGC
T ss_pred CCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhC
Confidence 99999999999999999998755432221 12223346789999999999999999999999999999999 99999999
Q ss_pred ceEEEEeCCEEEEeeeeeeecCCCC--CCEEEEEEEeCCC----CCeeEEEEeCCCCCeEEecccCcccccccc--eeeE
Q 017765 187 NTTATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDI 258 (366)
Q Consensus 187 ~t~A~~~~~g~~lnG~K~~is~a~~--Ad~~~v~a~~~~~----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~--~~~v 258 (366)
.|+|++++|||+|||+|.||||+.+ |||++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ +++|
T Consensus 162 ~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v 241 (415)
T 4hr3_A 162 AATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVV 241 (415)
T ss_dssp CCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEE
T ss_pred eeEEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEE
Confidence 9999999999999999999999966 9999999998643 579999999999999999999999999987 9999
Q ss_pred EEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHH
Q 017765 259 LLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNI 337 (366)
Q Consensus 259 ~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l 337 (366)
+||||+||++++|+.. +++......+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++
T Consensus 242 ~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~ 321 (415)
T 4hr3_A 242 SFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAI 321 (415)
T ss_dssp EEEEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHHHH
T ss_pred EEccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHHHH
Confidence 9999999999999876 567888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc--CCCChhccccccC
Q 017765 338 QAMILVGWRLCKLYEK--GAMTPGHASLGKV 366 (366)
Q Consensus 338 ~a~r~~~~~~a~~~d~--g~~~~~~a~~aK~ 366 (366)
+++|++++++++.+|+ +.+...+++++|+
T Consensus 322 ~aar~~~~~aa~~~d~~~~~~~~~~~~~aK~ 352 (415)
T 4hr3_A 322 NQTRLLVLHAAWLLDTVGIMGALSAVSEIKV 352 (415)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 9999999999999998 4455667777773
No 23
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5.7e-60 Score=450.57 Aligned_cols=300 Identities=22% Similarity=0.286 Sum_probs=273.3
Q ss_pred HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhH
Q 017765 64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 142 (366)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~ 142 (366)
+.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++|+++++.+.+|..+
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 457889999999988888888999999999999999999977 9999999999999999999999999988877777556
Q ss_pred HHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeC
Q 017765 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (366)
Q Consensus 143 ~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 222 (366)
+...|. +|+++||++|||++.+|+ ++|+++|||++|||+..+.|+|++++|||+|||+|.||||+..|||++|+++++
T Consensus 82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~ 159 (366)
T 1r2j_A 82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE 159 (366)
T ss_dssp HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence 777888 999999999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHH-HHHHHHHhHHHHHHHHHHHH
Q 017765 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVLAVSRVMVAWQPIGISM 300 (366)
Q Consensus 223 ~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~-~~~l~~~r~~~aa~~~G~a~ 300 (366)
+ +++++|+||++.||+++.+.|+++|+|++++++|+||||+||++++++.. +++... ...+..+|+.+++.++|+++
T Consensus 160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~ 238 (366)
T 1r2j_A 160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILR 238 (366)
T ss_dssp S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 37899999999999999999999999999999999999999999999865 567667 77889999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChhccccccC
Q 017765 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-AMTPGHASLGKV 366 (366)
Q Consensus 301 ~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g-~~~~~~a~~aK~ 366 (366)
++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++ .+...+++++|+
T Consensus 239 ~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~ 305 (366)
T 1r2j_A 239 ACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKH 305 (366)
T ss_dssp HHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 555667777773
No 24
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=1.7e-59 Score=470.85 Aligned_cols=306 Identities=27% Similarity=0.451 Sum_probs=281.4
Q ss_pred cccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-CCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHH
Q 017765 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (366)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (366)
+...+..++++|+++++.+++|+++++.|...++++.+ .+|.++|++|+++||+++.+ ++|||.|+++.+.+.++|++
T Consensus 26 ~~~~p~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel 105 (597)
T 3owa_A 26 QVFTPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKF 105 (597)
T ss_dssp GCCCGGGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred hcCCccCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence 33345678999999999999999999999887777654 68899999999999999977 99999999999999999999
Q ss_pred HccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEeeee
Q 017765 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK 203 (366)
Q Consensus 126 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~lnG~K 203 (366)
++++ +.+..+..|.+++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ |++|+|||+|
T Consensus 106 ~~~~-~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K 184 (597)
T 3owa_A 106 SRAG-GFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEK 184 (597)
T ss_dssp GGGT-HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEE
T ss_pred Hccc-hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEE
Confidence 9986 444455566666667788999999999999999999999999999999999999999999995 4569999999
Q ss_pred eeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHH
Q 017765 204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSK 282 (366)
Q Consensus 204 ~~is~a~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~ 282 (366)
.||||+..|||++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+.. +++.....
T Consensus 185 ~~is~a~~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~ 263 (597)
T 3owa_A 185 QWITNSAFADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFN 263 (597)
T ss_dssp EEEETTTTCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred EEeCCCccCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHH
Confidence 99999999999999999864 58999999999999999999999999999999999999999999999876 57888889
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 017765 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA 355 (366)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~ 355 (366)
.++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.
T Consensus 264 ~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~ 336 (597)
T 3owa_A 264 ILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRM 336 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998753
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-58 Score=463.31 Aligned_cols=299 Identities=29% Similarity=0.451 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHH-hCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCc
Q 017765 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE-KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (366)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s 131 (366)
.+++|++++++.+++|+++++.|...+.+. ...+|+++|++|++.||+++.+ ++|||.|+++.+...++|++ +.|++
T Consensus 27 ~~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s 105 (577)
T 2z1q_A 27 DFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGG 105 (577)
T ss_dssp GCCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCT
T ss_pred CCCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhccc
Confidence 468999999999999999988877444332 2378999999999999999977 99999999999999999999 77888
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEE--eCCEEEEeeeeeeecCC
Q 017765 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNS 209 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~--~~~g~~lnG~K~~is~a 209 (366)
+++.+.+|.+++..+|..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|++ ++++|+|||+|+||||+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a 185 (577)
T 2z1q_A 106 FSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNA 185 (577)
T ss_dssp HHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETT
T ss_pred HHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCC
Confidence 8888888876666789999999999999999999999999999999999999999999999 45689999999999999
Q ss_pred CCCCEEEEEEEeCCCCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHh
Q 017765 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (366)
Q Consensus 210 ~~Ad~~~v~a~~~~~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r 288 (366)
..||+++|+|++++ .++++|+||++.|||++.+.|+++|++++++++|+|+||+||.+++|+.. +++......++.+|
T Consensus 186 ~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R 264 (577)
T 2z1q_A 186 GFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGR 264 (577)
T ss_dssp TTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHH
T ss_pred CccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHH
Confidence 99999999999964 67999999999999999999999999999999999999999999999875 68888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017765 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (366)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g 354 (366)
+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|++++++++.+|++
T Consensus 265 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~ 330 (577)
T 2z1q_A 265 YKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEA 330 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 26
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=2e-57 Score=443.05 Aligned_cols=315 Identities=21% Similarity=0.287 Sum_probs=282.2
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hC-CCC--HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHH
Q 017765 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIA 121 (366)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v 121 (366)
.|++.++++|+++++.+++|+++++.|...+++. .. .+| +++|++|+++||+++.+ ++|||.|+++.+.+.+
T Consensus 2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 5788999999999999999999999887665543 22 565 89999999999999977 9999999999999999
Q ss_pred HHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcc--cceeEEEecCCCCCC-----CcCCCceEEEEeC
Q 017765 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE 194 (366)
Q Consensus 122 ~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g--~~~~~~a~tEp~~Gs-----d~~~~~t~A~~~~ 194 (366)
+|++++.|+++++.+..+ .++...|..+|+++ |++|||++.+| +.++|+++|||++|| |+.+++|+|++++
T Consensus 82 ~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g 159 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG 159 (438)
T ss_dssp HHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred HHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence 999999999888766554 35667788899999 99999999986 589999999999998 6889999999999
Q ss_pred CEEEEeeeeeeecCCC-----CCCEEEEEEEeCC---------CCCeeEEEEeCCC-----CC-eEEecccCcccccccc
Q 017765 195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ 254 (366)
Q Consensus 195 ~g~~lnG~K~~is~a~-----~Ad~~~v~a~~~~---------~~~~~~flV~~~~-----pG-v~~~~~~~~~G~r~~~ 254 (366)
|||+|||+|.||||+. .||+++|+|+++. ..++++|+||++. || +++.+.|+++|+++++
T Consensus 160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~ 239 (438)
T 3mkh_A 160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS 239 (438)
T ss_dssp TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence 9999999999999997 7999999999853 1468999999875 98 9999999999999999
Q ss_pred eeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCccchhhHHHHHHH
Q 017765 255 NGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG-APLAAFQINQQKLVQ 332 (366)
Q Consensus 255 ~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg-~pi~~~q~vq~~La~ 332 (366)
+++|+||||+||++++|+.. .++......+..+|+.+++.++|+++++++.+++|+++|+||| +||++||.+|++|++
T Consensus 240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~ 319 (438)
T 3mkh_A 240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSG 319 (438)
T ss_dssp CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHH
T ss_pred ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHH
Confidence 99999999999999999876 5788888899999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC----hhccccccC
Q 017765 333 MLGNIQAMILVGWRLCKLYEKGAMT----PGHASLGKV 366 (366)
Q Consensus 333 ~~~~l~a~r~~~~~~a~~~d~g~~~----~~~a~~aK~ 366 (366)
|.++++++|++++++++.++++... ...++++|+
T Consensus 320 ~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~aK~ 357 (438)
T 3mkh_A 320 VKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKV 357 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Confidence 9999999999999999999987643 123556663
No 27
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=8.3e-57 Score=452.48 Aligned_cols=317 Identities=26% Similarity=0.368 Sum_probs=285.7
Q ss_pred cccCCcCCCHHHHH----HHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHH
Q 017765 48 YYQFDDLLTSEEQA----VRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAI 122 (366)
Q Consensus 48 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~ 122 (366)
.+.++..+++++.+ +++.+++|+++.+.| ...|....+|+++|++|++.||+++.+ ++|||.|++..+...+.
T Consensus 39 ~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~ 116 (607)
T 2uxw_A 39 VFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLV 116 (607)
T ss_dssp TSSCCCCCCHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCH--HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHH
Confidence 33444567777754 889999999997755 345677899999999999999999977 99999999999999999
Q ss_pred HHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe
Q 017765 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE 200 (366)
Q Consensus 123 e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln 200 (366)
|+++++|+++++.+.+|..++..+|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 117 e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln 196 (607)
T 2uxw_A 117 EIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN 196 (607)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 99999999998888777655567889999999999999999999999999999999999999999999996 4489999
Q ss_pred eeeeeecCCCCCCEEEEEEEeCC--------CCCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCccc
Q 017765 201 GQKRWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272 (366)
Q Consensus 201 G~K~~is~a~~Ad~~~v~a~~~~--------~~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~ 272 (366)
|+|+||||+..||+++|+|++++ .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++|+
T Consensus 197 G~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG 276 (607)
T 2uxw_A 197 GSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLG 276 (607)
T ss_dssp EEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEES
T ss_pred eEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcC
Confidence 99999999999999999999842 1468999999999999999999999999999999999999999999998
Q ss_pred CC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 273 GV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLY 351 (366)
Q Consensus 273 ~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~ 351 (366)
.. .++......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.+.++++|++++++++.+
T Consensus 277 ~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~ 356 (607)
T 2uxw_A 277 EVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANM 356 (607)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76 57888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-ChhccccccC
Q 017765 352 EKGAM-TPGHASLGKV 366 (366)
Q Consensus 352 d~g~~-~~~~a~~aK~ 366 (366)
|.+.+ ....++++|+
T Consensus 357 d~~~~~~~~~~~~aK~ 372 (607)
T 2uxw_A 357 DQGATDFQIEAAISKI 372 (607)
T ss_dssp HTTCSCCHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHH
Confidence 98753 3456777773
No 28
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-57 Score=442.79 Aligned_cols=318 Identities=20% Similarity=0.259 Sum_probs=271.3
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----CC-----CCHHHHHHHHhcCCccCCcCCCCCCCC
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGGTIKGYGCPGH 113 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~-----~~~~~~~~l~~~Gl~~~~~~~~GG~g~ 113 (366)
|...|++.++++|.++++.+++|+++++.|... +.++. .. ++.++|++|++.||+++.+++ |.|+
T Consensus 15 ~~~~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~--G~g~ 92 (428)
T 2wbi_A 15 DTTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA--VSGL 92 (428)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH--HHCC
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC--CCCC
Confidence 555688889999999999999999998877655 44432 23 457899999999999998844 7899
Q ss_pred CHHHHHHHHHHHHccCCch-hHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCC-CCCCcCCCceEEE
Q 017765 114 SVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTAT 191 (366)
Q Consensus 114 ~~~~~~~v~e~la~~~~s~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~t~A~ 191 (366)
++.+...++|++++++.+. ++.+..+..++...|..+|+++||++|||++.+|+.++|+++|||+ +|||+.++.|+|+
T Consensus 93 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~ 172 (428)
T 2wbi_A 93 SHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQ 172 (428)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEE
T ss_pred CHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEE
Confidence 9999999999999987432 2211122224567888999999999999999999999999999999 9999999999999
Q ss_pred EeCCEEEEeeeeeeecCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCCCCeEEecccCcccccccc---eeeEEEc
Q 017765 192 KVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLK 261 (366)
Q Consensus 192 ~~~~g~~lnG~K~~is~a~~--Ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~~~~~~~~~G~r~~~---~~~v~f~ 261 (366)
+++|||+|||+|.||||+.. |||++|+|+++++ .++++|+||.+.|||++.+.|+++|+++++ +++|.||
T Consensus 173 ~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd 252 (428)
T 2wbi_A 173 RDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFN 252 (428)
T ss_dssp EETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEE
T ss_pred EeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeC
Confidence 99999999999999999987 9999999998643 368999999999999999999999999995 9999999
Q ss_pred ceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHH
Q 017765 262 KVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAM 340 (366)
Q Consensus 262 ~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~ 340 (366)
||+||++++|+.. .++......+..+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++
T Consensus 253 dv~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aa 332 (428)
T 2wbi_A 253 QVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKI 332 (428)
T ss_dssp EEEEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHH
T ss_pred ceEECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999875 567777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-C-CCChhccccccC
Q 017765 341 ILVGWRLCKLYEK-G-AMTPGHASLGKV 366 (366)
Q Consensus 341 r~~~~~~a~~~d~-g-~~~~~~a~~aK~ 366 (366)
|++++++++.+|+ + .....+++++|+
T Consensus 333 r~~~~~aa~~~d~~g~~~~~~~~~~aK~ 360 (428)
T 2wbi_A 333 RLLTLKAAHSMDTLGSAGAKKEIAMIKV 360 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 9999999999987 3 334556777763
No 29
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=9.6e-57 Score=438.27 Aligned_cols=315 Identities=20% Similarity=0.263 Sum_probs=283.2
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----CCCC--HHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHH
Q 017765 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (366)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (366)
|++.++++|.++++.+++|+++++.|...++++. +.+| .++|++|++.||+++.+ ++|||.|+++.+.+.++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 6778999999999999999999998877655542 3455 89999999999999977 999999999999999999
Q ss_pred HHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHh--cccceeEEEecCCCCCC-----CcCCCceEEEEeCCE
Q 017765 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG 196 (366)
Q Consensus 124 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~--~g~~~~~~a~tEp~~Gs-----d~~~~~t~A~~~~~g 196 (366)
+++++|+++++.+..|. ++...|..+|+++||++|||++. +|+.++|+++|||++|| |+.+++|+|++++||
T Consensus 82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g 160 (439)
T 2c12_A 82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160 (439)
T ss_dssp HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence 99999999988776664 56677899999999999999999 69999999999999998 578899999999999
Q ss_pred EEEeeeeeeecCCC-----CCCEEEEEEEe-C----CC-------CCeeEEEEeCCCC------CeEEecccCccccccc
Q 017765 197 WILEGQKRWIGNST-----FADVLVIFARN-T----TT-------NQINGYLVKKDAP------GLTVTKIENKIGLRIV 253 (366)
Q Consensus 197 ~~lnG~K~~is~a~-----~Ad~~~v~a~~-~----~~-------~~~~~flV~~~~p------Gv~~~~~~~~~G~r~~ 253 (366)
|+|||+|.||||+. .||+++|+|++ + ++ .++++|+||.+.| |+++.+.|+++|++++
T Consensus 161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~ 240 (439)
T 2c12_A 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 240 (439)
T ss_dssp EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence 99999999999997 89999999998 5 21 3689999999998 8889999999999999
Q ss_pred ceeeEEEcceeeCCCCcccCC-CCHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCCCccchhhHHHHH
Q 017765 254 QNGDILLKKVFVPDEDRLPGV-NSFQ-DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE-RKQFGAPLAAFQINQQKL 330 (366)
Q Consensus 254 ~~~~v~f~~v~vp~~~~l~~~-~~~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~-R~qfg~pi~~~q~vq~~L 330 (366)
++++|+||||+||++++|+.. .++. .....+...|+.+++.++|+++++++.+++|+++ |++||+||++||.||++|
T Consensus 241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~l 320 (439)
T 2c12_A 241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL 320 (439)
T ss_dssp CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHH
T ss_pred CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHHH
Confidence 999999999999999999875 4566 7788899999999999999999999999999997 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC----hhccccccC
Q 017765 331 VQMLGNIQAMILVGWRLCKLYEKGAMT----PGHASLGKV 366 (366)
Q Consensus 331 a~~~~~l~a~r~~~~~~a~~~d~g~~~----~~~a~~aK~ 366 (366)
++|.++++++|++++++++.++.+... ...++++|+
T Consensus 321 a~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~~~~aK~ 360 (439)
T 2c12_A 321 IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKI 360 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHH
Confidence 999999999999999999999987653 234677763
No 30
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=2.1e-52 Score=407.74 Aligned_cols=296 Identities=20% Similarity=0.260 Sum_probs=261.1
Q ss_pred CcccCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCC-CCHHHHHHHHHH
Q 017765 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG-HSVTGAAIAIAE 124 (366)
Q Consensus 47 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~ 124 (366)
++..|++.++++++++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++.+ ++|||.| .++.+++.++|+
T Consensus 12 ~~~~m~~~lt~e~~~l~~~~r~~~~~-~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~ee 90 (439)
T 3m9v_A 12 STTGLYAPVTPAGRVLLDRLAAHLPR-IRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLA 90 (439)
T ss_dssp CCSTTSSCSSHHHHHHHHHHHTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH-HhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHH
Confidence 45669999999999999999999986 88888888999999999999999999999977 9999999 899999999999
Q ss_pred HHccCCchhHHHHHHhhHHHHH--HHhcCCHHH---HHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEE
Q 017765 125 IARVDASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 199 (366)
Q Consensus 125 la~~~~s~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~l 199 (366)
++++|+++++.+.+|......+ +..+|+++| |++|||++.+|+.++|+++|||++ |...+.| +++|||+|
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vl 165 (439)
T 3m9v_A 91 VARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLL 165 (439)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEE
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEE
Confidence 9999999888777775444443 346799999 999999999999999999999985 3333333 27889999
Q ss_pred eeeeeeecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCccc--CC
Q 017765 200 EGQKRWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--GV 274 (366)
Q Consensus 200 nG~K~~is~a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~--~~ 274 (366)
||+|+||||+.+|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+ ..
T Consensus 166 nG~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~ 245 (439)
T 3m9v_A 166 SGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPV 245 (439)
T ss_dssp EEEEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC-
T ss_pred EeEEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCC
Confidence 9999999999999999999998643 468999999999999999999999999999999999999999999997 33
Q ss_pred -CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017765 275 -NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 275 -~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~ 353 (366)
.++.........+|+.+++.++|+++++++.+++|++ |+||+++|.+|++|++|.++++++|++++++++.++.
T Consensus 246 g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~ 320 (439)
T 3m9v_A 246 GARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE-----RRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADA 320 (439)
T ss_dssp -CCCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3443344445668999999999999999999999998 5689999999999999999999999999999887765
No 31
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=7.6e-53 Score=405.47 Aligned_cols=293 Identities=18% Similarity=0.216 Sum_probs=260.6
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCC-CCHHHHHHHHHHHHc
Q 017765 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG-HSVTGAAIAIAEIAR 127 (366)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~la~ 127 (366)
++...++++|+++++.+++|+++ +.|.+.+.|+.+.+|.++|++|++.||+++.+ ++|||.| .++.+.+.++|++++
T Consensus 4 ~~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~ 82 (395)
T 3mxl_A 4 DLRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAE 82 (395)
T ss_dssp SSSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHh
Confidence 46678899999999999999986 88888889999999999999999999999977 9999999 999999999999999
Q ss_pred cCCchhHHHHHHhhHHHHHH--HhcCCHHHH---HHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeee
Q 017765 128 VDASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 202 (366)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~ 202 (366)
+|+++++.+.+|..++..++ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..++| +++|||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~ 157 (395)
T 3mxl_A 83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGR 157 (395)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEE
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeE
Confidence 99999888777765554443 356999999 9999999999999999999998753 22322 37889999999
Q ss_pred eeeecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCccc--C-CCC
Q 017765 203 KRWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNS 276 (366)
Q Consensus 203 K~~is~a~~Ad~~~v~a~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~--~-~~~ 276 (366)
|.||||+..|||++|+|+++++ .++++|+||++.||+++.+.|+++|+|++++++|+||||+||++++++ . ..+
T Consensus 158 K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g 237 (395)
T 3mxl_A 158 KVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR 237 (395)
T ss_dssp EEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCC
T ss_pred EEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCcc
Confidence 9999999999999999998653 358899999999999999999999999999999999999999999997 3 245
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017765 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 277 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~ 353 (366)
+......+...|+.+++.++|+++++++.+++|++ |+||++||.+|++|++|.++++++|++++++++.+|.
T Consensus 238 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~ 309 (395)
T 3mxl_A 238 RDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNADA 309 (395)
T ss_dssp CTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54444446668999999999999999999999998 5689999999999999999999999999999998886
No 32
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=1.6e-52 Score=405.59 Aligned_cols=299 Identities=14% Similarity=0.089 Sum_probs=259.9
Q ss_pred cCCcCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHcc
Q 017765 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (366)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (366)
..++.++++|.++++.+++|+++ +.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 13 ~~~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 91 (414)
T 2or0_A 13 GRENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAAL 91 (414)
T ss_dssp ----------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 34566789999999999999987 88888888888999999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecC
Q 017765 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (366)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 208 (366)
|+++++.+..|. ++...|..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.||||
T Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~ 157 (414)
T 2or0_A 92 DGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSG 157 (414)
T ss_dssp CHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETT
T ss_pred ChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCC
Confidence 999887776664 67788999999999999999 79999999988 4 5899999999999999999999
Q ss_pred CCCCCEEEEEEEeCC---CC---CeeEEEEeCCCCCeEEe-cccCcccccccceeeEEEcceeeCCCCcccCC-------
Q 017765 209 STFADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV------- 274 (366)
Q Consensus 209 a~~Ad~~~v~a~~~~---~~---~~~~flV~~~~pGv~~~-~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~------- 274 (366)
+..|||++|+|++++ .. ++++|+||++ |+++. +.|+++|++++++++|.||||+||++++|+..
T Consensus 158 a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~ 235 (414)
T 2or0_A 158 TDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA 235 (414)
T ss_dssp GGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHH
T ss_pred CchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCC
Confidence 999999999999863 13 7899999997 89999 99999999999999999999999999999641
Q ss_pred ------CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017765 275 ------NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF-GAPLAAFQINQQKLVQMLGNIQAMILVGWRL 347 (366)
Q Consensus 275 ------~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf-g~pi~~~q~vq~~La~~~~~l~a~r~~~~~~ 347 (366)
.++......+...|+.+++.++|+++++++.+++|+++|+|| |+||+++|.+|++|++|.++++++|++++++
T Consensus 236 ~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~a 315 (414)
T 2or0_A 236 QKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIET 315 (414)
T ss_dssp HHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234344556788999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHH----cCCCCh----hcccccc
Q 017765 348 CKLYE----KGAMTP----GHASLGK 365 (366)
Q Consensus 348 a~~~d----~g~~~~----~~a~~aK 365 (366)
++.++ .|.... ..++++|
T Consensus 316 a~~~~~~~~~g~~~~~~~~~~~~~aK 341 (414)
T 2or0_A 316 ADRFYDKVDAGKEITFEERAIGRRTQ 341 (414)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999 665432 3566666
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=7.4e-51 Score=391.50 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHH
Q 017765 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 139 (366)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~ 139 (366)
++++.+++|+++ +.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+.+.++|+++++|+++++.+..|
T Consensus 11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 89 (394)
T 2rfq_A 11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII 89 (394)
T ss_dssp HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 588999999986 88888888888999999999999999999977 9999999999999999999999999988776666
Q ss_pred hhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEE
Q 017765 140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (366)
Q Consensus 140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 219 (366)
. ++..+|..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.||||+..|||++|+|
T Consensus 90 ~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 155 (394)
T 2rfq_A 90 G-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG 155 (394)
T ss_dssp H-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred H-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEee
Confidence 4 67778889999999999999 79999999987 4 589999999999999999999999999999999
Q ss_pred EeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccC--------C-----CCHHHHHHH
Q 017765 220 RNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG--------V-----NSFQDTSKV 283 (366)
Q Consensus 220 ~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~--------~-----~~~~~~~~~ 283 (366)
+++++ +++++|+||.+ |+++.+.|+++|++++++++|+||||+||++++|+. . .++......
T Consensus 156 ~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~ 233 (394)
T 2rfq_A 156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPW 233 (394)
T ss_dssp EEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCH
T ss_pred eecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccccH
Confidence 98322 26899999997 899999999999999999999999999999999964 1 234444556
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCC
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERK---QFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGAM 356 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~---qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d----~g~~ 356 (366)
+...|+.+++.++|+++++++.+++|+++|+ |||+||+++|.+|++|++|.++++++|++++++++.+| ++.+
T Consensus 234 ~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g~~ 313 (394)
T 2rfq_A 234 GTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEE 313 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999999999 99999999999999999999999999999999999999 6654
Q ss_pred Ch----hcccccc
Q 017765 357 TP----GHASLGK 365 (366)
Q Consensus 357 ~~----~~a~~aK 365 (366)
.. ..++++|
T Consensus 314 ~~~~~~~~~~~aK 326 (394)
T 2rfq_A 314 VPFELRLRARRDQ 326 (394)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 32 2466666
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=1.3e-50 Score=393.12 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCc-CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHH
Q 017765 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 139 (366)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~ 139 (366)
++++.+++|+++ +.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+++++|+++++.+..|
T Consensus 39 ~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 117 (422)
T 2jbr_A 39 SMLEKIQQILPQ-IAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL 117 (422)
T ss_dssp CHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 578999999984 88888888888999999999999999999977 9999999999999999999999999988776665
Q ss_pred hhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEE
Q 017765 140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (366)
Q Consensus 140 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 219 (366)
.++..+|..+|+++||++|+|+ |+.++|+++| | .|+|++++|||+|||+|.||||+..|||++|+|
T Consensus 118 -~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 183 (422)
T 2jbr_A 118 -CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGF 183 (422)
T ss_dssp -HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred -HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEEE
Confidence 4677888999999999999996 8889999987 4 579999999999999999999999999999999
Q ss_pred EeCCC---CCeeEEEEeCCCCCeEEecccCcccccccceeeEEEcceeeCCCCcccC---------CCC-----HHHHHH
Q 017765 220 RNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------VNS-----FQDTSK 282 (366)
Q Consensus 220 ~~~~~---~~~~~flV~~~~pGv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~---------~~~-----~~~~~~ 282 (366)
+++++ .++++|+||++ |+++.+.|+++|++++++++|+||||+||++++|+. +.+ +.....
T Consensus 184 ~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~ 261 (422)
T 2jbr_A 184 NRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTP 261 (422)
T ss_dssp EEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSC
T ss_pred EecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccccc
Confidence 98532 36899999997 899999999999999999999999999999999965 223 444556
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh--hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCC
Q 017765 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERK--QFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGAM 356 (366)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~--qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d----~g~~ 356 (366)
.+..+|+.+++.++|+++++++.+++|+++|+ |||+||++||.+|++|++|.++++++|++++++++.++ ++.+
T Consensus 262 ~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g~~ 341 (422)
T 2jbr_A 262 YRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQY 341 (422)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77889999999999999999999999999998 99999999999999999999999999999999999999 6654
Q ss_pred Ch----hcccccc
Q 017765 357 TP----GHASLGK 365 (366)
Q Consensus 357 ~~----~~a~~aK 365 (366)
.. ..++++|
T Consensus 342 ~~~~~~~~~~~aK 354 (422)
T 2jbr_A 342 PNKETLAFWRTNQ 354 (422)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 32 3566766
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=9.6e-48 Score=390.29 Aligned_cols=297 Identities=22% Similarity=0.262 Sum_probs=251.0
Q ss_pred CcccC-CcCCC-HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHHHHHHHHH
Q 017765 47 DYYQF-DDLLT-SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAE 124 (366)
Q Consensus 47 d~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~ 124 (366)
|+..| .+.++ +++.++++.+++|+.++.... ...+....++++.|+.|++.|++...+++|| .+..+...+.++
T Consensus 17 ~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e~ 92 (659)
T 1w07_A 17 DVEDMKIVWAGSRHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHF 92 (659)
T ss_dssp CHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred CHHHHHHHHCCChHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHHH
Confidence 44443 33444 889999999999998853321 1111224577899999999998886557787 356777777666
Q ss_pred HHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CCEEEEe--
Q 017765 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-- 200 (366)
Q Consensus 125 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 200 (366)
++ .+++ +.+|..++...|..+|+++||++|||++.+|+.++|+|+|||++|||+.+++|+|+++ +|||+||
T Consensus 93 ~~---~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP 167 (659)
T 1w07_A 93 ID---QPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTP 167 (659)
T ss_dssp HC---CCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECC
T ss_pred hc---cchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCC
Confidence 63 4444 5677667788999999999999999999999999999999999999999999999998 6899999
Q ss_pred ---eeeeeecC-CCCCCEEEEEEEeCCC---CCeeEEEEeC-C------CCCeEEecccCccc---ccccceeeEEEcce
Q 017765 201 ---GQKRWIGN-STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKKV 263 (366)
Q Consensus 201 ---G~K~~is~-a~~Ad~~~v~a~~~~~---~~~~~flV~~-~------~pGv~~~~~~~~~G---~r~~~~~~v~f~~v 263 (366)
|+|+||+| +..|||++|+|+++.+ .|+++|+||. + .|||++.++|+++| +++++++.|.||||
T Consensus 168 ~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~V 247 (659)
T 1w07_A 168 TQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHV 247 (659)
T ss_dssp SGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSE
T ss_pred CCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccE
Confidence 99999999 7999999999998632 3789999995 4 69999999999999 99999999999999
Q ss_pred eeCCCCcccC-------CCCH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-------Cccch
Q 017765 264 FVPDEDRLPG-------VNSF------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAF 323 (366)
Q Consensus 264 ~vp~~~~l~~-------~~~~------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~-------pi~~~ 323 (366)
+||++++|+. +.++ ......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 248 rVP~~~lLg~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~ 327 (659)
T 1w07_A 248 RIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDY 327 (659)
T ss_dssp EEEGGGBCCSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGS
T ss_pred EECHHHhcCCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhcc
Confidence 9999999984 2222 23455678899999999999999999999999999999998 89999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 324 QINQQKLVQMLGNIQAMILVGWRLCKLYE 352 (366)
Q Consensus 324 q~vq~~La~~~~~l~a~r~~~~~~a~~~d 352 (366)
|.+|++|++|.+++++++++++++++.++
T Consensus 328 q~vq~rLa~~~a~~~a~~~~~~~aa~~~~ 356 (659)
T 1w07_A 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYT 356 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998774
No 36
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=6.9e-44 Score=361.52 Aligned_cols=294 Identities=19% Similarity=0.257 Sum_probs=233.2
Q ss_pred CcccCCc--CCCHHHHHHHHHHHHHHHhhccccHHH--H-----HHhCCCCHHHHHHHHhcCCccCCcCCCCCCCCCHHH
Q 017765 47 DYYQFDD--LLTSEEQAVRMKVRECMEKEIAPIMAE--Y-----WEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG 117 (366)
Q Consensus 47 d~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~ 117 (366)
|+..|.. .-++++.++++++++++.+. |.... . ++..+...+..+.|.+. +++|||.+ ...
T Consensus 15 ~~~~l~~~l~g~~~~~~~r~~~~~~l~~~--p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~------~~~~~~~~--~~~ 84 (661)
T 2ddh_A 15 NPELITHILDGSPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATMVKK------MREYGISD--PEE 84 (661)
T ss_dssp CHHHHHHHHHTSHHHHHHHHHHHHHHHTC--GGGCCSCGGGSCHHHHHHHHHHHHHHHHHH------HHHTTCCC--HHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHHhcC--cccccCCcCCCCHHHHHHHHHHHHHHHHHH------HHHcCCCC--chH
Confidence 5555653 33578889999999999875 32110 0 00011111222333332 25677765 333
Q ss_pred HHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEe--CC
Q 017765 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EG 195 (366)
Q Consensus 118 ~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~ 195 (366)
.. +.+++...+. +..+.+|..+++..|..+|+++||++|||++.+|+.++|+|+|||++|||+.+++|+|+++ +|
T Consensus 85 ~~-~~~~~~~~~~--~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~ 161 (661)
T 2ddh_A 85 IM-WFKNSVHRGH--PEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQ 161 (661)
T ss_dssp HH-HHHHHHHTTC--CCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTT
T ss_pred HH-HHHHHhccch--hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCC
Confidence 33 3666654332 3345677767888999999999999999999999999999999999999999999999998 78
Q ss_pred EEEEe-----eeeeeecC-CCCCCEEEEEEEeCCC---CCeeEEEEeC-C------CCCeEEecccCcccccccceeeEE
Q 017765 196 GWILE-----GQKRWIGN-STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIGLRIVQNGDIL 259 (366)
Q Consensus 196 g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~---~~~~~flV~~-~------~pGv~~~~~~~~~G~r~~~~~~v~ 259 (366)
||+|| |+|+||+| +..|||++|+|++..+ .|+++|+||. + .|||++.++|+++|++++++++|.
T Consensus 162 ~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~ 241 (661)
T 2ddh_A 162 EFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLK 241 (661)
T ss_dssp EEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEE
T ss_pred eEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEE
Confidence 99999 99999999 7899999999998532 4789999995 4 799999999999999999999999
Q ss_pred EcceeeCCCCcccCC-----CC-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-------Cc
Q 017765 260 LKKVFVPDEDRLPGV-----NS-------FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PL 320 (366)
Q Consensus 260 f~~v~vp~~~~l~~~-----~~-------~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~-------pi 320 (366)
||||+||++++|+.. +| +......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||
T Consensus 242 Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i 321 (661)
T 2ddh_A 242 MDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQI 321 (661)
T ss_dssp ESSEEEEGGGBCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBG
T ss_pred eccEEECHHHhcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCccccc
Confidence 999999999999862 23 456667778999999999999999999999999999999998 89
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017765 321 AAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (366)
Q Consensus 321 ~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~ 353 (366)
++||.+|++|++|.+++++++++++++++.+++
T Consensus 322 ~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~ 354 (661)
T 2ddh_A 322 LDFQTQQYKLFPLLATAYAFHFVGRYMKETYLR 354 (661)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998863
No 37
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.1e-43 Score=352.13 Aligned_cols=256 Identities=17% Similarity=0.201 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCccCCc---CCCCCCCCCHHHHHHHHHHHHccCCchhHHHHHHhhHHHHHHHhcCCHHHHHHHhHHHhc
Q 017765 89 FHVIPKLGALRVAGGTI---KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165 (366)
Q Consensus 89 ~~~~~~l~~~Gl~~~~~---~~~GG~g~~~~~~~~v~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~ 165 (366)
.++++.+.+.||+++.+ ++|||.+........ ++..+.+......++.+ +...|..+| ++||++|+|++.+
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~----~~~~~~~~~~p~~~t~~-~~~~L~~~g-~eqk~~~lp~l~s 162 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFML----HAQVEAGSLCPITMTFA-ATPLLLQML-PAPFQDWTTPLLS 162 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHH----HHHHCSTTHHHHHHHHH-HHHHHHHHC-CGGGGGGHHHHTC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHH----HHHHHHhhhcHHHHHHH-HHHHHHHcC-HHHHHHHHHHHhC
Confidence 57889999999999943 789865433333322 22333333333334443 556778888 9999999999999
Q ss_pred ccc-------------eeEEEecCCCCCCCcCCCceEEEEe-CCEEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeeEEE
Q 017765 166 LNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL 231 (366)
Q Consensus 166 g~~-------------~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~~~~~fl 231 (366)
|+. ++|+++|||++|||+.+++|+|+++ +|+|+|||+|+|+| +..|||++|+|+++ +|+++|+
T Consensus 163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl 239 (541)
T 3djl_A 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF 239 (541)
T ss_dssp SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence 998 7899999999999999999999999 78899999999999 89999999999996 6899999
Q ss_pred EeCCCC-----CeEEecccCcccccccceeeEEEcceeeCCCCcccCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017765 232 VKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDM 305 (366)
Q Consensus 232 V~~~~p-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 305 (366)
||++.| ||++.+.|+++|+|++++++|.|+||+ +++++.. .++......++.+|+.+++.++|+++++++.
T Consensus 240 Vp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~ 316 (541)
T 3djl_A 240 VPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSL 316 (541)
T ss_dssp EESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999996 6888875 5788888999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 017765 306 CHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM 356 (366)
Q Consensus 306 a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~ 356 (366)
+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.+|.+..
T Consensus 317 a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~~~ 367 (541)
T 3djl_A 317 AIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRAD 367 (541)
T ss_dssp HHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999998753
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.5e-35 Score=285.92 Aligned_cols=216 Identities=17% Similarity=0.145 Sum_probs=175.2
Q ss_pred HHHHhcCC--HHHHHHHhHHHhcccceeEEEecCCCCC--------CCc-CCCceEEEEeCCEEEEeeeeeeecCCCCCC
Q 017765 145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (366)
Q Consensus 145 ~~l~~~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~-~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad 213 (366)
..+..+|+ ++||++|||++++|++++|+|+|||+.| ||+ ..++ ++++++|||+|||+|+|+||+..||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 34568999 9999999999999999999999999874 675 3444 8899999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeeEEEEeCCCCCeEEe---cccCc----------ccc-cc-cceeeEEEcceeeCCCCcc--c
Q 017765 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVT---KIENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P 272 (366)
Q Consensus 214 ~~~v~a~~~~----~~~~~~flV~~~~pGv~~~---~~~~~----------~G~-r~-~~~~~v~f~~v~vp~~~~l--~ 272 (366)
+++|+++++. .+++++|+||.++|||++. +.+++ +|+ |. .++++|.||||+||++++| +
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 9999999742 1347899999999999994 44444 666 63 6778999999999999998 4
Q ss_pred CC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017765 273 GV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLY 351 (366)
Q Consensus 273 ~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~ 351 (366)
.. .++......+...|..+++.++|.++.++..+..... .|| |+++|.||++|++|.++++++|++++++++..
T Consensus 277 ~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~ 351 (490)
T 1u8v_A 277 EYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YNG--AQKASHVKDKLIEMTHLNETLYCCGIACSAEG 351 (490)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC--chhcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 43 3455566677788888877777777666666655443 255 89999999999999999999999999999988
Q ss_pred Hc---CC--CChhccccccC
Q 017765 352 EK---GA--MTPGHASLGKV 366 (366)
Q Consensus 352 d~---g~--~~~~~a~~aK~ 366 (366)
|. |. +...+++++|+
T Consensus 352 d~~~~g~~~~~~~~~s~aK~ 371 (490)
T 1u8v_A 352 YPTAAGNYQIDLLLANVCKQ 371 (490)
T ss_dssp EECTTSCEECCHHHHHHHHH
T ss_pred cccccCCcCccHHHHHHHHH
Confidence 74 32 33556788874
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=5.8e-35 Score=285.85 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=174.2
Q ss_pred CHHHHHHHhHHHhcccceeEEEecCCCCC--------CCcCCCceEEE-EeCCEEEEeeeeeeecCCCCCCEEEEEEEeC
Q 017765 152 SEEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (366)
Q Consensus 152 ~~~q~~~~l~~l~~g~~~~~~a~tEp~~G--------sd~~~~~t~A~-~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 222 (366)
.++||++|||++.+|++++|+|+|||+.| ||+. +.|+++ +++|||+|||+|+|||| ..||+++|+++++
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~ 199 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL 199 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence 36999999999999999999999999976 6764 667765 68999999999999999 9999999999985
Q ss_pred C---C-CCeeEEEEeCCCCCeEEe--cccC--------cccccc-cceeeEEEcceeeCCCCcc--cCCC-CHHHH--HH
Q 017765 223 T---T-NQINGYLVKKDAPGLTVT--KIEN--------KIGLRI-VQNGDILLKKVFVPDEDRL--PGVN-SFQDT--SK 282 (366)
Q Consensus 223 ~---~-~~~~~flV~~~~pGv~~~--~~~~--------~~G~r~-~~~~~v~f~~v~vp~~~~l--~~~~-~~~~~--~~ 282 (366)
. + +++++|+||.++|||++. +.+. ++|.|. .++++|.||||+||++++| +..+ ++... ..
T Consensus 200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~ 279 (481)
T 2yyk_A 200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG 279 (481)
T ss_dssp CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence 2 1 358999999999999995 3333 257774 7889999999999999998 3331 23333 55
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--CC
Q 017765 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---GA--MT 357 (366)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~---g~--~~ 357 (366)
.+..+|+..++..+|.++.++..+..++.. || |+++|.||++|++|.++++++|++++++++..|. |. +.
T Consensus 280 ~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~~~~~ 354 (481)
T 2yyk_A 280 ALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPD 354 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCcc
Confidence 778899999999999999999999988874 55 9999999999999999999999999999999864 43 34
Q ss_pred hhccccccC
Q 017765 358 PGHASLGKV 366 (366)
Q Consensus 358 ~~~a~~aK~ 366 (366)
..+++++|+
T Consensus 355 ~~~~s~aK~ 363 (481)
T 2yyk_A 355 RGALDGARN 363 (481)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 557888884
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.98 E-value=3.2e-32 Score=266.38 Aligned_cols=210 Identities=14% Similarity=0.139 Sum_probs=159.3
Q ss_pred cCC--HHHHHHHhHHHhcccceeEEEecCCCC--------CCCcCCCceEEEEeCCEEEEeeeeeeecCCCCCCEEEEEE
Q 017765 150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (366)
Q Consensus 150 ~g~--~~q~~~~l~~l~~g~~~~~~a~tEp~~--------Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 219 (366)
+|+ .+|+++|||++.+|++++|+|+|||+. |||+ .+.++ .+++|||+|||+|.||||+..||+++|++
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 555 588999999999999999999999986 4787 55443 45789999999999999999999999999
Q ss_pred Ee-CCC--CCeeEEEEeCCCCCeEEecccCcccc-----cc-----cceeeEEEcceeeCCCCcc--cCC-CCHHHHHHH
Q 017765 220 RN-TTT--NQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGV-NSFQDTSKV 283 (366)
Q Consensus 220 ~~-~~~--~~~~~flV~~~~pGv~~~~~~~~~G~-----r~-----~~~~~v~f~~v~vp~~~~l--~~~-~~~~~~~~~ 283 (366)
++ ++. +.+++|+||.++|||++...+.++|. +. ..++.|.||||+||.+++| |.. .++...+..
T Consensus 205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~ 284 (515)
T 3hwc_A 205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI 284 (515)
T ss_dssp CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence 98 321 23899999999999999877776662 22 3488999999999999999 554 355444333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--CCh
Q 017765 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---GA--MTP 358 (366)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~---g~--~~~ 358 (366)
+...+....+..+|.+..++..+..++. +|| |++||.||++|++|.++++++|++++++++..+. |. +..
T Consensus 285 ~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~~ 359 (515)
T 3hwc_A 285 FDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNP 359 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCH
Confidence 3333211123344555555555444442 355 9999999999999999999999999999998875 32 455
Q ss_pred hccccccC
Q 017765 359 GHASLGKV 366 (366)
Q Consensus 359 ~~a~~aK~ 366 (366)
.+++++|+
T Consensus 360 ~~as~AK~ 367 (515)
T 3hwc_A 360 LIYDFGRA 367 (515)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67888884
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.91 E-value=1.1e-23 Score=206.26 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=158.2
Q ss_pred HHHHHHhHHHhcccceeEEEecCCCCC-----CCcCCCceE-EEEeCCEEEEeeeeeeecCCCCCCEEEEEEEeCCC---
Q 017765 154 EQKQKYLPSLAQLNTIACWALTEPAYG-----SDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--- 224 (366)
Q Consensus 154 ~q~~~~l~~l~~g~~~~~~a~tEp~~G-----sd~~~~~t~-A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~--- 224 (366)
+...+|+..+.++++..+.++|+|... +....+... .++++|||+|||.|.|+||++.||+++|++++.+.
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 456789999999999999999999742 111122233 34578999999999999999999999999988543
Q ss_pred CCeeEEEEeCCCCCeEEecc---------cCccccccc-ceeeEEEcceeeCCCCcc--cCCC-CHHHHHHHHHHHhHHH
Q 017765 225 NQINGYLVKKDAPGLTVTKI---------ENKIGLRIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVLAVSRVMV 291 (366)
Q Consensus 225 ~~~~~flV~~~~pGv~~~~~---------~~~~G~r~~-~~~~v~f~~v~vp~~~~l--~~~~-~~~~~~~~l~~~r~~~ 291 (366)
++...|+||.++||+++... ..+++.++. ..+.|.||||+||.++++ +..+ ++......+...|...
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~ 293 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA 293 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence 45789999999999998432 233444433 347899999999999987 4442 3455667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CCChhcccccc
Q 017765 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---G--AMTPGHASLGK 365 (366)
Q Consensus 292 aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~---g--~~~~~~a~~aK 365 (366)
++..+|.++.++..+..++.. +| |.+||.||++|++|.+.+|++|++++.++..... | .+....++++|
T Consensus 294 ~~~~~~~~~~~~g~a~~~ae~---~G--i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a~~aK 367 (517)
T 4g5e_A 294 LIRQSVRAELMAGLAILITEH---IG--TNKIPAVQTRVAKLIGFHQAMLAHIVASEELGFHTPGGAYKPNILIYDFGR 367 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHHHHHH
Confidence 888899999999999888853 45 8999999999999999999999999987754322 2 13445666666
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=71.01 E-value=11 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC
Q 017765 299 SMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK-GAMT 357 (366)
Q Consensus 299 a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~-g~~~ 357 (366)
+...+..++.++.+| +|+.|.+.|.+..+|+|+.++++++.+.+.++.+.+.. |.+.
T Consensus 467 ~~~~~~~~~~~~~~~--~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~ 524 (597)
T 3owa_A 467 AKKIGLMVAGLAAQK--YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEK 524 (597)
T ss_dssp HHHHHHHHHHHHHHH--HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 333344444555444 57889999999999999999999999999999998875 6543
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=34.82 E-value=1.2e+02 Score=29.85 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=37.1
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017765 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT 357 (366)
Q Consensus 316 fg~pi~~~q~vq~~La~~~~~l~a~r~~~~~~a~~~d~g~~~ 357 (366)
.|..+.+.|.+..||+++...++++-+.+.++.+.++.|.+.
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~ 547 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPT 547 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 577888999999999999999999999999998888777654
Done!