Query 017767
Match_columns 366
No_of_seqs 186 out of 276
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 3E-120 6E-125 899.4 38.8 362 5-366 8-369 (373)
2 PF04862 DUF642: Protein of un 100.0 6.8E-48 1.5E-52 344.3 20.0 157 25-181 1-159 (159)
3 PLN03089 hypothetical protein; 100.0 1.9E-42 4.2E-47 343.9 18.6 159 188-366 24-190 (373)
4 PF04862 DUF642: Protein of un 100.0 2E-38 4.3E-43 283.3 18.5 150 192-360 1-159 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.8 3.2E-07 7E-12 76.1 15.9 116 191-336 1-126 (131)
6 PF02018 CBM_4_9: Carbohydrate 98.6 1.4E-06 3.1E-11 72.2 14.5 110 25-162 2-126 (131)
7 cd06263 MAM Meprin, A5 protein 92.4 3.4 7.4E-05 35.7 12.3 80 275-361 72-154 (157)
8 smart00137 MAM Domain in mepri 85.5 21 0.00046 31.4 12.3 81 274-361 75-158 (161)
9 PF03422 CBM_6: Carbohydrate b 84.2 22 0.00049 29.4 13.6 98 80-181 21-124 (125)
10 PF00629 MAM: MAM domain; Int 84.0 10 0.00022 31.9 9.3 80 274-361 72-155 (160)
11 PF03422 CBM_6: Carbohydrate b 81.5 29 0.00063 28.7 14.1 101 250-360 21-124 (125)
12 PF15425 DUF4627: Domain of un 79.9 31 0.00067 32.5 11.2 78 190-282 5-95 (212)
13 smart00137 MAM Domain in mepri 79.6 40 0.00087 29.6 11.8 80 102-182 75-158 (161)
14 PF00629 MAM: MAM domain; Int 73.9 21 0.00047 29.9 8.1 83 99-182 69-155 (160)
15 PF14900 DUF4493: Domain of un 69.2 17 0.00037 34.2 7.1 77 53-129 127-223 (235)
16 cd06263 MAM Meprin, A5 protein 65.3 41 0.00089 28.9 8.2 80 102-182 71-154 (157)
17 PRK15252 putative fimbrial-lik 61.7 14 0.0003 37.6 5.0 99 15-126 21-126 (344)
18 PF08308 PEGA: PEGA domain; I 52.2 67 0.0014 24.2 6.4 37 76-112 31-69 (71)
19 PF08308 PEGA: PEGA domain; I 50.8 46 0.00099 25.1 5.3 36 247-282 32-67 (71)
20 PF14344 DUF4397: Domain of un 47.6 55 0.0012 27.2 5.8 39 72-110 35-81 (122)
21 PF05547 Peptidase_M6: Immune 45.6 2.3E+02 0.005 31.5 11.5 104 249-360 339-459 (645)
22 PF14054 DUF4249: Domain of un 43.0 66 0.0014 30.7 6.3 17 94-110 92-108 (298)
23 TIGR02148 Fibro_Slime fibro-sl 38.2 79 0.0017 26.4 5.1 43 74-116 30-78 (90)
24 TIGR02148 Fibro_Slime fibro-sl 36.6 83 0.0018 26.2 5.0 49 245-296 31-85 (90)
25 PF14344 DUF4397: Domain of un 33.6 58 0.0013 27.1 3.8 46 236-281 28-80 (122)
26 PF03944 Endotoxin_C: delta en 33.4 3.3E+02 0.007 23.7 10.2 98 80-183 26-142 (143)
27 PF07675 Cleaved_Adhesin: Clea 32.6 2.9E+02 0.0064 24.7 8.4 78 272-359 71-167 (167)
28 COG3536 Uncharacterized protei 30.3 57 0.0012 28.4 3.1 50 212-265 35-86 (120)
29 cd08901 SRPBCC_CalC_Aha1-like_ 27.9 3.6E+02 0.0079 22.6 8.9 65 269-339 36-101 (136)
30 PF14900 DUF4493: Domain of un 23.6 3.2E+02 0.007 25.6 7.3 15 269-283 191-205 (235)
31 cd08895 SRPBCC_CalC_Aha1-like_ 22.5 4.7E+02 0.01 22.0 10.7 24 316-339 97-120 (146)
32 PF11182 AlgF: Alginate O-acet 22.2 2.4E+02 0.0051 26.4 5.9 39 71-112 59-97 (181)
33 TIGR02656 cyanin_plasto plasto 21.6 1.6E+02 0.0035 23.9 4.3 18 96-113 62-79 (99)
34 cd08545 YcnI_like Reeler-like 20.9 1.5E+02 0.0032 26.8 4.3 44 98-144 12-57 (152)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-120 Score=899.43 Aligned_cols=362 Identities=73% Similarity=1.227 Sum_probs=349.8
Q ss_pred eeeeeeehhhccceeeecccCcccCCCCCCCCCCCCCCceEEeCCCCCCCcEEeeeEEEEeCCCccCceEEecCCCceEE
Q 017767 5 IFLSALLCFTCHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAV 84 (366)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ll~NG~FE~~P~~~~~~~t~~~g~~~ip~W~~~G~Veyi~sg~~~g~m~~~vpeG~~av 84 (366)
.+++|||+++++++++++.||||+|||||++|.+.++++++..+.++||+|+++|+||||+++||||||+|+||+|+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av 87 (373)
T PLN03089 8 LLLLLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAV 87 (373)
T ss_pred HHHHHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhh
Confidence 34555555566666677899999999999999999899999999999999999999999999999999999999999999
Q ss_pred EcCCCceeEEEEEecCCcEEEEEEEecccccccceEEEEECCccceeeeeeeecccceeEEEEEEEEecceEEEEEECCC
Q 017767 85 RLGNEASVKQRIKVIKGNYYSISFNFARTCAQEESLNISVAPEWGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPG 164 (366)
Q Consensus 85 ~Lg~~~~I~Q~~~t~~G~~Y~lTFsaa~tca~~~~l~vsv~~~~~~~~~qt~y~~~gw~~~~~~F~A~~~~t~l~f~s~~ 164 (366)
|||+|++|+|+|+|++|++|+|||+++|+|+|+|.|+|+|++++++||+|++|+++||++|+|+|+|+++.++|+|||++
T Consensus 88 ~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~~ 167 (373)
T PLN03089 88 RLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPG 167 (373)
T ss_pred hcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeEEEeeccCCccCccccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCC
Q 017767 165 VEEDPACGPLIDSIAIRGLYPPRASNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDH 244 (366)
Q Consensus 165 ~~~~~~cGP~iD~V~v~~l~~p~~~~~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~ 244 (366)
+++|++|||+||+|+||+|++|+++++|||+||+||+||++++|++||||+||++++++|+||||+|+++|+|||||+.|
T Consensus 168 ~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h 247 (373)
T PLN03089 168 VEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH 247 (373)
T ss_pred cCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred CcCCCCCeEEEecCCCcceEEEEEEccCCCEEEEEEEeccCCCcCCcceEEEEEcCcceEEEEeeecCCcceEEEEEEEE
Q 017767 245 FSVPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFV 324 (366)
Q Consensus 245 ~~vP~G~~aVeL~~G~e~~I~Q~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~~~~~~y~s~G~~~w~~~s~~F~ 324 (366)
|.||+|+|||||++|+|++|+|+|+|++|+.|+|+|+||||+|.|+|+|.|++++|..+++++|+++|+++|++++|.|+
T Consensus 248 ~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~~F~ 327 (373)
T PLN03089 248 FSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASLRFK 327 (373)
T ss_pred ccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceEEEEEEecccccccCCCCCcccceeeeEEEEEecCCC
Q 017767 325 AVSNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLLSVRSKA 366 (366)
Q Consensus 325 A~~~~t~l~F~s~~~~~~~d~~~~~cGPvlD~V~v~~v~~~~ 366 (366)
|++++|||+|+|.+||||+||.+++|||+||||+|++++.|+
T Consensus 328 A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~ 369 (373)
T PLN03089 328 AVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPR 369 (373)
T ss_pred eccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEccCCc
Confidence 999999999999999999999899999999999999998763
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=6.8e-48 Score=344.26 Aligned_cols=157 Identities=49% Similarity=0.881 Sum_probs=150.4
Q ss_pred CcccCCCCCCCCCCCCCCceEEe-CCCCCCCcEEeeeEEEEeCCCccCceEEecCCCceEEEcCCCceeEEEEEecCCcE
Q 017767 25 GLLPNGNFELGPRPSDMNGTVVL-GRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNY 103 (366)
Q Consensus 25 ~ll~NG~FE~~P~~~~~~~t~~~-g~~~ip~W~~~G~Veyi~sg~~~g~m~~~vpeG~~av~Lg~~~~I~Q~~~t~~G~~ 103 (366)
|||+||+||++|.+.+++++.+. +.++||||++.|.||||+++|++|+|+++||+|.||||||++++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 79999999999999888887776 88999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccccceEEEEECCc-cceeeeeeeecccceeEEEEEEEEecceEEEEEECCCCCCCCCCCcceeeEEEe
Q 017767 104 YSISFNFARTCAQEESLNISVAPE-WGVLPLQTLYSSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDSIAIR 181 (366)
Q Consensus 104 Y~lTFsaa~tca~~~~l~vsv~~~-~~~~~~qt~y~~~gw~~~~~~F~A~~~~t~l~f~s~~~~~~~~cGP~iD~V~v~ 181 (366)
|+|||+++|+|++.|.|+|+|.++ +.++++++.+++.+|++|+|.|+|.+++++|.|+++++++|++|||+||||+||
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999999999999999999996 788999999988889999999999999999999999999999999999999997
No 3
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=343.93 Aligned_cols=159 Identities=28% Similarity=0.509 Sum_probs=144.1
Q ss_pred cCccccccCCCCCCCCCCC-CCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCC------CcCCCCCeEEEecCCC
Q 017767 188 ASNKNILKNGGFEEGPYVF-PNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDH------FSVPQGKRAIELVAGK 260 (366)
Q Consensus 188 ~~~~NLl~NG~FE~gP~~~-~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~------~~vP~G~~aVeL~~G~ 260 (366)
..++|||+|||||++|+.+ +|.+ +.++.++||||+|++ .||||+++| |.||+|+||||| |+
T Consensus 24 ~~~~nLL~NG~FE~gP~~~~~n~t--------~~~g~s~LPgW~i~g--~VeyI~s~~~~~~m~~~vP~G~~Av~L--G~ 91 (373)
T PLN03089 24 PVTDGLLPNGDFETPPKKSQMNGT--------VVIGKNAIPGWEISG--FVEYISSGQKQGGMLLVVPEGAHAVRL--GN 91 (373)
T ss_pred cccCCeecCCCccCCCCcCCCCcc--------cccCCCCCCCCEecC--cEEEEeCCCccCceeEECCCCchhhhc--CC
Confidence 4578999999999999885 6654 567899999999987 699999999 999999999999 99
Q ss_pred cceEEEEEEccCCCEEEEEEEeccCCCcCCcceEEEEEcCcceEEEEeee-cCCcceEEEEEEEEEeeceEEEEEEeccc
Q 017767 261 ESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYES-KGKGGFKRAVLRFVAVSNRTRIMFLSTFY 339 (366)
Q Consensus 261 e~~I~Q~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~~~~~~y~s-~G~~~w~~~s~~F~A~~~~t~l~F~s~~~ 339 (366)
|++|+|+|+|++|++|+|||++ +|+|+++|.|+|+++..++.++|++ .++++|++++|.|+|++++|+|+|+++
T Consensus 92 e~sI~Q~i~t~~G~~Y~LTFs~---ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~-- 166 (373)
T PLN03089 92 EASISQTLTVTKGSYYSLTFSA---ARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNP-- 166 (373)
T ss_pred CceEEEEEEccCCCEEEEEEEe---cCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECc--
Confidence 9999999999999999999995 4999999999999998899999887 588899999999999999999999976
Q ss_pred ccccCCCCCcccceeeeEEEEEecCCC
Q 017767 340 TMRSDDFSSLCGPVIDDVKLLSVRSKA 366 (366)
Q Consensus 340 ~~~~d~~~~~cGPvlD~V~v~~v~~~~ 366 (366)
+++.| ++|||+||||+|+++++|.
T Consensus 167 ~~~~D---~~CGPviD~VaIk~l~~P~ 190 (373)
T PLN03089 167 GVEED---PACGPLIDAVAIKTLFPPR 190 (373)
T ss_pred ccCCC---CcccceeeeEEEeeccCCC
Confidence 45555 6899999999999997763
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=2e-38 Score=283.33 Aligned_cols=150 Identities=44% Similarity=0.749 Sum_probs=123.4
Q ss_pred ccccCCCCCCCCCCC-CCCCceeecCCCccCCCCCCCCcEEeecceEEEEeCCCCc------CCCCCeEEEecCCCcceE
Q 017767 192 NILKNGGFEEGPYVF-PNTSWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFS------VPQGKRAIELVAGKESAI 264 (366)
Q Consensus 192 NLl~NG~FE~gP~~~-~n~~~gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~~~------vP~G~~aVeL~~G~e~~I 264 (366)
|||+||+||++|+.. ++.++ +.++.++||||++++. ||||+++|+. ||+|+||||| |++++|
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~-------~~~~~s~ipGWtv~g~--Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I 69 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS-------LSDGSSSIPGWTVSGS--VEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSI 69 (159)
T ss_pred CCccCCCCCCCCccCCCCcce-------EccCCCcCCCcEEcCE--EEEEecCCccCceeeeCCCCceEEEc--CCCceE
Confidence 899999999999873 34443 5567899999999874 9999999986 9999999999 999999
Q ss_pred EEEEEccCCCEEEEEEEeccCCCcCCcceEEEEEcCc-ceEEEEeeecC-CcceEEEEEEEEEeeceEEEEEEecccccc
Q 017767 265 AQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGK-GTIKVPYESKG-KGGFKRAVLRFVAVSNRTRIMFLSTFYTMR 342 (366)
Q Consensus 265 ~Q~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~-~~~~~~y~s~G-~~~w~~~s~~F~A~~~~t~l~F~s~~~~~~ 342 (366)
+|+|+|++|++|+|+|+++ |.|++.+.++|.++. ....+++.+.. +++|++++|.|+|.+++++|.|++.+ ++
T Consensus 70 ~Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~--~~ 144 (159)
T PF04862_consen 70 SQTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPG--ME 144 (159)
T ss_pred EEEEEccCCCEEEEEEEec---CCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCC--cc
Confidence 9999999999999999963 899887444444443 46777777664 45699999999998877778887664 34
Q ss_pred cCCCCCcccceeeeEEEE
Q 017767 343 SDDFSSLCGPVIDDVKLL 360 (366)
Q Consensus 343 ~d~~~~~cGPvlD~V~v~ 360 (366)
+| .+|||+||||+||
T Consensus 145 ~d---~~cGp~iDnV~vk 159 (159)
T PF04862_consen 145 SD---SACGPVIDNVSVK 159 (159)
T ss_pred CC---CCceeEEEEEEeC
Confidence 43 4999999999996
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.81 E-value=3.2e-07 Score=76.14 Aligned_cols=116 Identities=28% Similarity=0.407 Sum_probs=71.9
Q ss_pred cccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEeecc-eEEEEeCCCCcCCCCCeEEEecCCCc--ceEEE-
Q 017767 191 KNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIESLK-AVKYIDSDHFSVPQGKRAIELVAGKE--SAIAQ- 266 (366)
Q Consensus 191 ~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g~~-~VeyI~s~~~~vP~G~~aVeL~~G~e--~~I~Q- 266 (366)
.|||+||+||++ .+.+|...+.. ....++.. .|.+++.+..... ..+.|
T Consensus 1 ~nli~N~~Fe~~----------------------~~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFEDG----------------------GLSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTTT----------------------STTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccCC----------------------CCCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 489999999983 13588887632 23344432 8999999865433 23333
Q ss_pred -EEEccCCCEEEEEEEeccCCCcCCcceEEEEEcCcc--eEEEEe-eecCCcceEEEEEEEEEeec--eEEEEEEe
Q 017767 267 -IARTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKG--TIKVPY-ESKGKGGFKRAVLRFVAVSN--RTRIMFLS 336 (366)
Q Consensus 267 -~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~--~~~~~y-~s~G~~~w~~~s~~F~A~~~--~t~l~F~s 336 (366)
.+.+.+|+.|+|+|.+-. .....+.|.+..... ...+.. ....++.|++++++|++..+ ..+|.|+.
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKA---DSGGTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEE---SSSEEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred cceEecCCCEEEEEEEEEe---CCCCEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 468999999999999731 112345555544322 122222 22334689999999999844 44566644
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.63 E-value=1.4e-06 Score=72.21 Aligned_cols=110 Identities=22% Similarity=0.390 Sum_probs=70.7
Q ss_pred CcccCCCCCCCCCCCCCCceEEeCCCCCCCcEEeeeE---EEEeCCCccCceEEecCCCceEEEcCCC----cee--EEE
Q 017767 25 GLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFV---EYIRSGQKQGDMLLVVPEGAFAVRLGNE----ASV--KQR 95 (366)
Q Consensus 25 ~ll~NG~FE~~P~~~~~~~t~~~g~~~ip~W~~~G~V---eyi~sg~~~g~m~~~vpeG~~av~Lg~~----~~I--~Q~ 95 (366)
|||.||+||+ ..+.+|...+.. ..++ .+.|.+++++.+. ..+ ++.
T Consensus 2 nli~N~~Fe~---------------~~~~~W~~~~~~~~~~~~~-----------~~~g~~~l~v~~~~~~~~~~~~~~~ 55 (131)
T PF02018_consen 2 NLIKNGGFED---------------GGLSGWSFWGNSGASASVD-----------NASGNYSLKVSNRSATWDGQSQQQT 55 (131)
T ss_dssp BSSSSTTSTT---------------TSTTTEEEESSTTEEEEEE-----------ECSSSEEEEEECCSSGCGEEEEEEE
T ss_pred CEEECCCccC---------------CCCCCCEEccCCCEEEEEE-----------cCCCeEEEEEECCCCCccccceecc
Confidence 7999999998 235578884432 2222 2378888888322 233 344
Q ss_pred EEecCCcEEEEEEEecccccccceEEEEECCccc----eeeeeeeecccceeEEEEEEEEe--cceEEEEEEC
Q 017767 96 IKVIKGNYYSISFNFARTCAQEESLNISVAPEWG----VLPLQTLYSSNGWDTYAWAFQAK--FNYAEIVLHN 162 (366)
Q Consensus 96 ~~t~~G~~Y~lTFsaa~tca~~~~l~vsv~~~~~----~~~~qt~y~~~gw~~~~~~F~A~--~~~t~l~f~s 162 (366)
+.+++|++|+|+|.+-.... ..+++.+..... .+..+..-....|..|+..|++. ...+.|.|+-
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred eEecCCCEEEEEEEEEeCCC--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 68999999999999865554 445555554333 22222333346799999999988 5556777776
No 7
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=92.35 E-value=3.4 Score=35.72 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=54.1
Q ss_pred EEEEEEEeccCCCcCCcceEEEEEcCcc-eEEEEeeecCC--cceEEEEEEEEEeeceEEEEEEecccccccCCCCCccc
Q 017767 275 TYTLTFTVGDANNACAGSMVVEAFAGKG-TIKVPYESKGK--GGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLCG 351 (366)
Q Consensus 275 ~Y~LtFslgdA~~~c~~~~~v~v~~g~~-~~~~~y~s~G~--~~w~~~s~~F~A~~~~t~l~F~s~~~~~~~d~~~~~cG 351 (366)
..-|+|.+=-.++. .+.++|.+..... .....++.+|. ..|...++.+.+....-+|.|.... ..+....
T Consensus 72 ~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~------~~~~~g~ 144 (157)
T cd06263 72 SHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVR------GSGSRGD 144 (157)
T ss_pred CeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEE------CCCcccc
Confidence 44499998322222 4567777755443 33444554443 6899999999998899999998874 1223455
Q ss_pred ceeeeEEEEE
Q 017767 352 PVIDDVKLLS 361 (366)
Q Consensus 352 PvlD~V~v~~ 361 (366)
=.||||+|..
T Consensus 145 IAIDdI~l~~ 154 (157)
T cd06263 145 IALDDISLSP 154 (157)
T ss_pred EEEeEEEEec
Confidence 7899999974
No 8
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=85.47 E-value=21 Score=31.37 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=53.4
Q ss_pred CEEEEEEEeccCCCcCCcceEEEEEc-CcceEEEEeeecCC--cceEEEEEEEEEeeceEEEEEEecccccccCCCCCcc
Q 017767 274 KTYTLTFTVGDANNACAGSMVVEAFA-GKGTIKVPYESKGK--GGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSLC 350 (366)
Q Consensus 274 ~~Y~LtFslgdA~~~c~~~~~v~v~~-g~~~~~~~y~s~G~--~~w~~~s~~F~A~~~~t~l~F~s~~~~~~~d~~~~~c 350 (366)
..+-|+|.+=-. ....+.++|.+.. +....+..++..|. ..|....+.+......-+|.|...- ..+...
T Consensus 75 ~~~cl~F~Y~m~-G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~------g~~~~g 147 (161)
T smart00137 75 STHCLTFWYYMY-GSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTR------GKGHSG 147 (161)
T ss_pred CCeEEEEEEEec-CCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEE------cCCccc
Confidence 356799998221 1224456666653 22223445666664 5799999999988888999998863 112234
Q ss_pred cceeeeEEEEE
Q 017767 351 GPVIDDVKLLS 361 (366)
Q Consensus 351 GPvlD~V~v~~ 361 (366)
-=.||||+|.+
T Consensus 148 ~IAiDDI~i~~ 158 (161)
T smart00137 148 YIALDDILLSN 158 (161)
T ss_pred eEEEeEEEeec
Confidence 56899999974
No 9
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=84.20 E-value=22 Score=29.37 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=59.0
Q ss_pred CceEEEcCCC-ceeE-EEEEecCCcEEEEEEEecccccccceEEEEECCc----cceeeeeeeecccceeEEEEEEEEec
Q 017767 80 GAFAVRLGNE-ASVK-QRIKVIKGNYYSISFNFARTCAQEESLNISVAPE----WGVLPLQTLYSSNGWDTYAWAFQAKF 153 (366)
Q Consensus 80 G~~av~Lg~~-~~I~-Q~~~t~~G~~Y~lTFsaa~tca~~~~l~vsv~~~----~~~~~~qt~y~~~gw~~~~~~F~A~~ 153 (366)
|.+.+....+ +.|. ..+.+..+..|.|++.++..-.. ..+.|.+++. .+.+++....+-..|.......+...
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~ 99 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA 99 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC
Confidence 5666666332 3343 34889999999999987644333 5789999982 24566654333333555555555554
Q ss_pred ceEEEEEECCCCCCCCCCCcceeeEEEe
Q 017767 154 NYAEIVLHNPGVEEDPACGPLIDSIAIR 181 (366)
Q Consensus 154 ~~t~l~f~s~~~~~~~~cGP~iD~V~v~ 181 (366)
-.=+|.|...+-+ .|.+=||.+.+.
T Consensus 100 G~h~i~l~~~~~~---~~~~niD~~~f~ 124 (125)
T PF03422_consen 100 GKHTIYLVFNGGD---GWAFNIDYFQFT 124 (125)
T ss_dssp EEEEEEEEESSSS---SB-EEEEEEEEE
T ss_pred CeeEEEEEEECCC---CceEEeEEEEEE
Confidence 4445555554311 177889988875
No 10
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=84.01 E-value=10 Score=31.86 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=40.9
Q ss_pred CEEEEEEEeccCCCcCC-cceEEEEEcC-cceEEEEe--eecCCcceEEEEEEEEEeeceEEEEEEecccccccCCCCCc
Q 017767 274 KTYTLTFTVGDANNACA-GSMVVEAFAG-KGTIKVPY--ESKGKGGFKRAVLRFVAVSNRTRIMFLSTFYTMRSDDFSSL 349 (366)
Q Consensus 274 ~~Y~LtFslgdA~~~c~-~~~~v~v~~g-~~~~~~~y--~s~G~~~w~~~s~~F~A~~~~t~l~F~s~~~~~~~d~~~~~ 349 (366)
..+-|+|.+- -.... +.++|.+... ....+... .......|....+.+.+....-+|.|.... ..+..
T Consensus 72 ~~~cl~F~y~--~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~------~~~~~ 143 (160)
T PF00629_consen 72 GNSCLSFWYY--MYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIR------GSSYR 143 (160)
T ss_dssp S--EEEEEEE--EE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE--------SS-
T ss_pred ccceeEEEEe--eccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEE------cCCCc
Confidence 3555999983 22222 4455555444 11222222 222336899999999999999999998763 11122
Q ss_pred ccceeeeEEEEE
Q 017767 350 CGPVIDDVKLLS 361 (366)
Q Consensus 350 cGPvlD~V~v~~ 361 (366)
-.=.||||.|.+
T Consensus 144 ~~iaiDdi~~~~ 155 (160)
T PF00629_consen 144 GDIAIDDISLSP 155 (160)
T ss_dssp -EEEEEEEEEES
T ss_pred eEEEEEEEEEeC
Confidence 346799999984
No 11
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=81.50 E-value=29 Score=28.70 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCeEEEecCCCcceEEEEEEccCCCEEEEEEEeccCCCcCCcceEEEEEc--CcceEEEEeeec-CCcceEEEEEEEEEe
Q 017767 250 GKRAIELVAGKESAIAQIARTIPGKTYTLTFTVGDANNACAGSMVVEAFA--GKGTIKVPYESK-GKGGFKRAVLRFVAV 326 (366)
Q Consensus 250 G~~aVeL~~G~e~~I~Q~v~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~--g~~~~~~~y~s~-G~~~w~~~s~~F~A~ 326 (366)
|.+.+-.....+......|....+..|.|++.++..... +.+.|.+-. +....++.+..+ +|..|+..+...+..
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~ 98 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLP 98 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeC
Confidence 666666643333333445888899999999998543322 334444422 234455666444 467788887777666
Q ss_pred eceEEEEEEecccccccCCCCCcccceeeeEEEE
Q 017767 327 SNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLL 360 (366)
Q Consensus 327 ~~~t~l~F~s~~~~~~~d~~~~~cGPvlD~V~v~ 360 (366)
.-.=+|.|...+ +. .|.+=||.+.+.
T Consensus 99 ~G~h~i~l~~~~------~~--~~~~niD~~~f~ 124 (125)
T PF03422_consen 99 AGKHTIYLVFNG------GD--GWAFNIDYFQFT 124 (125)
T ss_dssp SEEEEEEEEESS------SS--SB-EEEEEEEEE
T ss_pred CCeeEEEEEEEC------CC--CceEEeEEEEEE
Confidence 666666666653 11 277889998875
No 12
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=79.87 E-value=31 Score=32.46 Aligned_cols=78 Identities=23% Similarity=0.457 Sum_probs=33.6
Q ss_pred ccccccCCCCCCCCCCCCCCCceeecCCCccCCCCCCCCcEEee-----cceEEEEeCCCCcCCCCCeEEEecCCCc---
Q 017767 190 NKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMIES-----LKAVKYIDSDHFSVPQGKRAIELVAGKE--- 261 (366)
Q Consensus 190 ~~NLl~NG~FE~gP~~~~n~~~gvl~p~~~~~~~s~ipgW~i~g-----~~~VeyI~s~~~~vP~G~~aVeL~~G~e--- 261 (366)
..|||+||+|.+ |..+.++. .....+.-|-+.- ...+-++.++. --.| .++++ ++.+
T Consensus 5 AQnLIkN~~F~t-~Lt~e~~~----------as~~T~~~Wfavnde~~G~Tt~a~~~tnD--~k~~-na~~i-s~~~~~t 69 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNENTT----------ASNTTFGKWFAVNDEWDGATTIAWINTND--QKTG-NAWGI-SSWDKQT 69 (212)
T ss_dssp -----SSTT--S-----B-SS----------GGGS-TTSEEEEE-S-TTS-EEEEEE-S---TTS--EEEEE-TT-SS--
T ss_pred hhhhhhcCccCc-chhccccC----------cCcccccceEEEecccCCceEeeeeccCc--cccc-ceEEE-eecccCc
Confidence 569999999996 75433321 1123467787652 11244444332 1122 36776 2222
Q ss_pred ----ceEEEEE-EccCCCEEEEEEEe
Q 017767 262 ----SAIAQIA-RTIPGKTYTLTFTV 282 (366)
Q Consensus 262 ----~~I~Q~v-~t~~G~~Y~LtFsl 282 (366)
+-+.|.+ .-..-..|.|+|+.
T Consensus 70 sWykafLaQr~~~gae~~mYtLsF~A 95 (212)
T PF15425_consen 70 SWYKAFLAQRYTNGAEKGMYTLSFDA 95 (212)
T ss_dssp -TTTEEEEEEE-S---SSEEEEEEEE
T ss_pred HHHHHHHHHHHhcccccceEEEEEEe
Confidence 6788998 34455689999996
No 13
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=79.64 E-value=40 Score=29.63 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=50.8
Q ss_pred cEEEEEEEecccccccceEEEEECCcc-ce-eeeeeeec--ccceeEEEEEEEEecceEEEEEECCCCCCCCCCCcceee
Q 017767 102 NYYSISFNFARTCAQEESLNISVAPEW-GV-LPLQTLYS--SNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDS 177 (366)
Q Consensus 102 ~~Y~lTFsaa~tca~~~~l~vsv~~~~-~~-~~~qt~y~--~~gw~~~~~~F~A~~~~t~l~f~s~~~~~~~~cGP~iD~ 177 (366)
..+-|+|.+-..-.....|+|.+.... .. -++-+... ...|..-...+.......+|+|+-.- ..+...-=.|||
T Consensus 75 ~~~cl~F~Y~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~-g~~~~g~IAiDD 153 (161)
T smart00137 75 STHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTR-GKGHSGYIALDD 153 (161)
T ss_pred CCeEEEEEEEecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEE-cCCccceEEEeE
Confidence 356799997444344456888876321 11 12222222 34599999999877788999998842 123445668999
Q ss_pred EEEee
Q 017767 178 IAIRG 182 (366)
Q Consensus 178 V~v~~ 182 (366)
|.|..
T Consensus 154 I~i~~ 158 (161)
T smart00137 154 ILLSN 158 (161)
T ss_pred EEeec
Confidence 99874
No 14
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=73.90 E-value=21 Score=29.88 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred cCCcEEEEEEEecccccccceEEEEECCcc--ceeeeeeee--cccceeEEEEEEEEecceEEEEEECCCCCCCCCCCcc
Q 017767 99 IKGNYYSISFNFARTCAQEESLNISVAPEW--GVLPLQTLY--SSNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPL 174 (366)
Q Consensus 99 ~~G~~Y~lTFsaa~tca~~~~l~vsv~~~~--~~~~~qt~y--~~~gw~~~~~~F~A~~~~t~l~f~s~~~~~~~~cGP~ 174 (366)
..-..+-|+|.+-..-.....|+|.+.... ..-++-+.. .+..|....+.+.+.....+|+|.-.. ..+..-.=.
T Consensus 69 ~~~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~-~~~~~~~ia 147 (160)
T PF00629_consen 69 PASGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIR-GSSYRGDIA 147 (160)
T ss_dssp --SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---SS--EEE
T ss_pred cccccceeEEEEeeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEE-cCCCceEEE
Confidence 334467799997554444356888887762 112222222 245699999999999999999998731 112234457
Q ss_pred eeeEEEee
Q 017767 175 IDSIAIRG 182 (366)
Q Consensus 175 iD~V~v~~ 182 (366)
||||.|..
T Consensus 148 iDdi~~~~ 155 (160)
T PF00629_consen 148 IDDISLSP 155 (160)
T ss_dssp EEEEEEES
T ss_pred EEEEEEeC
Confidence 99999983
No 15
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=69.22 E-value=17 Score=34.19 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=50.6
Q ss_pred CCcEE------eeeEEEEeCCC-ccCceEEecCCCceEEEc--------CCCceeEEEE-----EecCCcEEEEEEEecc
Q 017767 53 PSWEI------SGFVEYIRSGQ-KQGDMLLVVPEGAFAVRL--------GNEASVKQRI-----KVIKGNYYSISFNFAR 112 (366)
Q Consensus 53 p~W~~------~G~Veyi~sg~-~~g~m~~~vpeG~~av~L--------g~~~~I~Q~~-----~t~~G~~Y~lTFsaa~ 112 (366)
..|++ .+.++|-.... ...-.||.++++...|.+ |.+-+-.+++ .+.+|.+|.|+|.+..
T Consensus 127 ~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~ 206 (235)
T PF14900_consen 127 SDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSD 206 (235)
T ss_pred cceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeecc
Confidence 55666 34566622211 224468999998888877 2122444554 6899999999999985
Q ss_pred cccccceEEEEECCccc
Q 017767 113 TCAQEESLNISVAPEWG 129 (366)
Q Consensus 113 tca~~~~l~vsv~~~~~ 129 (366)
.-.+.-.|.|.|.....
T Consensus 207 ~~~g~~~i~I~vd~~~~ 223 (235)
T PF14900_consen 207 SSAGSIGITITVDDTTE 223 (235)
T ss_pred CCCCeeEEEEEEeCCeE
Confidence 55566678888877543
No 16
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=65.29 E-value=41 Score=28.89 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=54.3
Q ss_pred cEEEEEEEecccccccceEEEEECCccc--eeeeeeeec--ccceeEEEEEEEEecceEEEEEECCCCCCCCCCCcceee
Q 017767 102 NYYSISFNFARTCAQEESLNISVAPEWG--VLPLQTLYS--SNGWDTYAWAFQAKFNYAEIVLHNPGVEEDPACGPLIDS 177 (366)
Q Consensus 102 ~~Y~lTFsaa~tca~~~~l~vsv~~~~~--~~~~qt~y~--~~gw~~~~~~F~A~~~~t~l~f~s~~~~~~~~cGP~iD~ 177 (366)
...-|+|.+-..-.....|+|.+....+ .-++-+... ...|..-...+.+.....+|.|+-.. ..+....=.|||
T Consensus 71 ~~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~-~~~~~g~IAIDd 149 (157)
T cd06263 71 SSHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVR-GSGSRGDIALDD 149 (157)
T ss_pred CCeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEE-CCCccccEEEeE
Confidence 4566999864443335678888876554 233333322 35699999999998888999999842 123445668999
Q ss_pred EEEee
Q 017767 178 IAIRG 182 (366)
Q Consensus 178 V~v~~ 182 (366)
|.|..
T Consensus 150 I~l~~ 154 (157)
T cd06263 150 ISLSP 154 (157)
T ss_pred EEEec
Confidence 99874
No 17
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=61.73 E-value=14 Score=37.64 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=57.4
Q ss_pred ccceeeecccCcccCCCCCCCCCCCCCCceEEeCCCCCCCcEEeeeEEEEeCCCccCceEEecCCCceEEEcC----CCc
Q 017767 15 CHHIAFSITDGLLPNGNFELGPRPSDMNGTVVLGRYAIPSWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLG----NEA 90 (366)
Q Consensus 15 ~~~~~~~~~~~ll~NG~FE~~P~~~~~~~t~~~g~~~ip~W~~~G~Veyi~sg~~~g~m~~~vpeG~~av~Lg----~~~ 90 (366)
+|.......+.++...+|-..+..+....+...|. .=+-++.| +..++-+.++-.+.|.+-|+|- +..
T Consensus 21 ~C~~~~t~~~~~i~~~~l~~~~~~s~~~~~~f~gt----~Cs~~~~v----t~~~~~~~ivGf~~~k~~l~~~it~~~~n 92 (344)
T PRK15252 21 ACYSELSVQHNLVVQGDFALNQTQSATYEHNFNDS----SCVSTNTI----TPMSPSDIIVGLYNDTIKLNLHFEWTNKN 92 (344)
T ss_pred eecCCcccccCceeecccccCCcceeEEEeeccCC----cccCCCcc----CCCCCccEEEEecCCeEEEEEEEEecCCC
Confidence 44444447788999999887654432222333331 11112222 4556677778889999999992 233
Q ss_pred eeEEEEEecCC---cEEEEEEEecccccccceEEEEECC
Q 017767 91 SVKQRIKVIKG---NYYSISFNFARTCAQEESLNISVAP 126 (366)
Q Consensus 91 ~I~Q~~~t~~G---~~Y~lTFsaa~tca~~~~l~vsv~~ 126 (366)
.| ++.-..| +.|+|+|+.... .+.++||+++
T Consensus 93 ~i--~l~n~~g~~~a~ytv~~t~~~s---~~~v~vsa~~ 126 (344)
T PRK15252 93 NI--TLSNNQTSFTSGYSVTVTPAAS---NAKVNVSAGS 126 (344)
T ss_pred ce--eccCCCceEecceEEEEEEccC---CccEEEecCC
Confidence 34 2211222 279999998633 3467777654
No 18
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=52.15 E-value=67 Score=24.20 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=30.6
Q ss_pred ecCCCceEEEcCCC--ceeEEEEEecCCcEEEEEEEecc
Q 017767 76 VVPEGAFAVRLGNE--ASVKQRIKVIKGNYYSISFNFAR 112 (366)
Q Consensus 76 ~vpeG~~av~Lg~~--~~I~Q~~~t~~G~~Y~lTFsaa~ 112 (366)
.+|.|.|.|++-.+ -...+++.+.+|+...|.+.+.+
T Consensus 31 ~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 31 DLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred ecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEEE
Confidence 38999999999433 46778999999999999998753
No 19
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=50.82 E-value=46 Score=25.12 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCCCeEEEecCCCcceEEEEEEccCCCEEEEEEEe
Q 017767 247 VPQGKRAIELVAGKESAIAQIARTIPGKTYTLTFTV 282 (366)
Q Consensus 247 vP~G~~aVeL~~G~e~~I~Q~v~t~~G~~Y~LtFsl 282 (366)
+|.|.|.|++-...--...++|.+.+|+...|.+.|
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 789999999954444456788999999999999987
No 20
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=47.61 E-value=55 Score=27.21 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=31.1
Q ss_pred ceEEecCCCceEEEc---CCCc-----eeEEEEEecCCcEEEEEEEe
Q 017767 72 DMLLVVPEGAFAVRL---GNEA-----SVKQRIKVIKGNYYSISFNF 110 (366)
Q Consensus 72 ~m~~~vpeG~~av~L---g~~~-----~I~Q~~~t~~G~~Y~lTFsa 110 (366)
-.|+.+|.|.|-|++ |... -++.++.+.+|+.|+|--.-
T Consensus 35 s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g 81 (122)
T PF14344_consen 35 SDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVG 81 (122)
T ss_pred cCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEEC
Confidence 347899999999999 4441 35788999999999997764
No 21
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=45.62 E-value=2.3e+02 Score=31.46 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCCeEEEecCCCc--ceEEEEEEccCCCEEEEEEEeccCCCcCCc---ceEEE-EEc-Ccc-eEEEEee-------ecCC
Q 017767 249 QGKRAIELVAGKE--SAIAQIARTIPGKTYTLTFTVGDANNACAG---SMVVE-AFA-GKG-TIKVPYE-------SKGK 313 (366)
Q Consensus 249 ~G~~aVeL~~G~e--~~I~Q~v~t~~G~~Y~LtFslgdA~~~c~~---~~~v~-v~~-g~~-~~~~~y~-------s~G~ 313 (366)
+|.++.=-..|+. ..+.+.|.+..+..=+|+|.. --.-+. -+.|+ |+. |.. ....... ..+.
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~---wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~ 415 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKA---WYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGS 415 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeeh---heecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCC
Confidence 4665554433443 567788877777667788873 111122 15677 433 221 1222211 1112
Q ss_pred -cceEEEEEEEEEe-eceEEEEEEecccccccCCCCCcccceeeeEEEE
Q 017767 314 -GGFKRAVLRFVAV-SNRTRIMFLSTFYTMRSDDFSSLCGPVIDDVKLL 360 (366)
Q Consensus 314 -~~w~~~s~~F~A~-~~~t~l~F~s~~~~~~~d~~~~~cGPvlD~V~v~ 360 (366)
++|...++...|- +.+++|.|.=. .|..-..-|-+||||+|.
T Consensus 416 sg~Wv~~~~DLSayAGqtV~LrFrY~-----TD~~v~~~G~~vDdi~v~ 459 (645)
T PF05547_consen 416 SGGWVDASFDLSAYAGQTVQLRFRYV-----TDGGVAGRGFYVDDIRVT 459 (645)
T ss_pred ccceeEeEeccccccCCeEEEEEEEE-----cCCCccCCcEEEEEEEEE
Confidence 4699999999885 45668999643 221223568999999997
No 22
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=43.04 E-value=66 Score=30.66 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=14.6
Q ss_pred EEEEecCCcEEEEEEEe
Q 017767 94 QRIKVIKGNYYSISFNF 110 (366)
Q Consensus 94 Q~~~t~~G~~Y~lTFsa 110 (366)
..|...+|..|+|+..+
T Consensus 92 ~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 92 NSFRGRPGRTYRLEVET 108 (298)
T ss_pred ccccccCCCEEEEEEEE
Confidence 45678999999999998
No 23
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=38.16 E-value=79 Score=26.38 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=31.7
Q ss_pred EEecCCCceEEEcCC-----CceeE-EEEEecCCcEEEEEEEecccccc
Q 017767 74 LLVVPEGAFAVRLGN-----EASVK-QRIKVIKGNYYSISFNFARTCAQ 116 (366)
Q Consensus 74 ~~~vpeG~~av~Lg~-----~~~I~-Q~~~t~~G~~Y~lTFsaa~tca~ 116 (366)
+|+--.|.-+||||. +++|. .++-.++|+.|.+.|=.+.++..
T Consensus 30 vWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ERht~ 78 (90)
T TIGR02148 30 VWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKEGKTYPFDIFYCERHTT 78 (90)
T ss_pred EEEEECCEEEEEccCcCCCcccEEEhhhcCCccCcEeeEEEEEEeecCC
Confidence 588889999999962 34554 33457899999999976655543
No 24
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=36.63 E-value=83 Score=26.24 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=31.8
Q ss_pred CcCCCCCeEEEecCCCcceEEE-----EEEccCCCEEEEEEEeccCCCcCCcc-eEEE
Q 017767 245 FSVPQGKRAIELVAGKESAIAQ-----IARTIPGKTYTLTFTVGDANNACAGS-MVVE 296 (366)
Q Consensus 245 ~~vP~G~~aVeL~~G~e~~I~Q-----~v~t~~G~~Y~LtFslgdA~~~c~~~-~~v~ 296 (366)
|..-+|+-+||| +|.-....+ ++..++|+.|.+.|-+ |-|--.++ ++++
T Consensus 31 WVFIn~kLv~Dl-GG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~--~ERht~~S~~~i~ 85 (90)
T TIGR02148 31 WVFINNKLVVDI-GGQHPAVPGAVDLDTLGLKEGKTYPFDIFY--CERHTTGSNFRIR 85 (90)
T ss_pred EEEECCEEEEEc-cCcCCCcccEEEhhhcCCccCcEeeEEEEE--EeecCCCCCEEEE
Confidence 666678888888 222222333 3356899999999988 66655444 5554
No 25
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=33.55 E-value=58 Score=27.06 Aligned_cols=46 Identities=35% Similarity=0.491 Sum_probs=34.4
Q ss_pred eEEEEe-CCCCcCCCCCeEEEec-CCCcc-----eEEEEEEccCCCEEEEEEE
Q 017767 236 AVKYID-SDHFSVPQGKRAIELV-AGKES-----AIAQIARTIPGKTYTLTFT 281 (366)
Q Consensus 236 ~VeyI~-s~~~~vP~G~~aVeL~-~G~e~-----~I~Q~v~t~~G~~Y~LtFs 281 (366)
.|.|=+ +++..+|.|.|-+++. +|... -+...+...+|+.|+|--.
T Consensus 28 ~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 28 NVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred cCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 466654 4578899999999993 45442 3467889999999999765
No 26
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=33.38 E-value=3.3e+02 Score=23.73 Aligned_cols=98 Identities=22% Similarity=0.372 Sum_probs=55.3
Q ss_pred CceEEEcCCCceeEEEEEe----cCCcEEEEEEEecccccccceEEEEECCccc--eeeeeeeeccc---c--eeEEEE-
Q 017767 80 GAFAVRLGNEASVKQRIKV----IKGNYYSISFNFARTCAQEESLNISVAPEWG--VLPLQTLYSSN---G--WDTYAW- 147 (366)
Q Consensus 80 G~~av~Lg~~~~I~Q~~~t----~~G~~Y~lTFsaa~tca~~~~l~vsv~~~~~--~~~~qt~y~~~---g--w~~~~~- 147 (366)
|.-.|+|.+...+.=++.+ ...+.|+|-..+| |.++-.+.+....... .+++++.+++. . ++.|.+
T Consensus 26 GGdlv~l~~~~~~~~~~~v~~~~~~~~~YrIRiRYA--s~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~ 103 (143)
T PF03944_consen 26 GGDLVKLSNSGSLSIKIRVTINNSSSQKYRIRIRYA--SNSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYV 103 (143)
T ss_dssp SS-EEEESSSCEECEEEEEEESSSSTEEEEEEEEEE--ESS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEE
T ss_pred CCcEEEEcCCCceEEEEEEEecCCCCceEEEEEEEE--ECCCcEEEEEECCccceeeeeccccccCCCccccccceeEee
Confidence 4557888766655223444 4789999999987 4466778888888655 67777665442 1 233333
Q ss_pred ----EEEEecce---EEEEEECCCCCCCCCCCcceeeEEEeec
Q 017767 148 ----AFQAKFNY---AEIVLHNPGVEEDPACGPLIDSIAIRGL 183 (366)
Q Consensus 148 ----~F~A~~~~---t~l~f~s~~~~~~~~cGP~iD~V~v~~l 183 (366)
.|...... .+|.+.+.. ....=+||.+....+
T Consensus 104 ~~~~~~~~~~~~~~~~~i~i~~~~----~~~~v~IDkIEFIPv 142 (143)
T PF03944_consen 104 EFPTPFTFSSNQSITITISIQNIS----SNGNVYIDKIEFIPV 142 (143)
T ss_dssp EESSEEEESTSEEEEEEEEEESST----TTS-EEEEEEEEEEC
T ss_pred ecCceEEecCCCceEEEEEEEecC----CCCeEEEEeEEEEeC
Confidence 13333333 456666632 124457888877654
No 27
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=32.56 E-value=2.9e+02 Score=24.66 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=37.8
Q ss_pred CCCEEEEEEEeccCCCcC-CcceEEEEEc-Cc--ceEEEEeee--c-----------C--CcceEEEEEEEEEeeceEEE
Q 017767 272 PGKTYTLTFTVGDANNAC-AGSMVVEAFA-GK--GTIKVPYES--K-----------G--KGGFKRAVLRFVAVSNRTRI 332 (366)
Q Consensus 272 ~G~~Y~LtFslgdA~~~c-~~~~~v~v~~-g~--~~~~~~y~s--~-----------G--~~~w~~~s~~F~A~~~~t~l 332 (366)
+|. .+|+|.+....+.+ .....|.++. |. ..++..++. . | ...|+.+++.+.+-.. .+
T Consensus 71 ~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~Lp~gt~--Y~ 147 (167)
T PF07675_consen 71 SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDLPAGTK--YF 147 (167)
T ss_dssp TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE-TT----EE
T ss_pred CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeCCCCCc--EE
Confidence 675 69999985433232 2224455543 22 222222221 1 1 1469999888865444 89
Q ss_pred EEEecccccccCCCCCcccceeeeEEE
Q 017767 333 MFLSTFYTMRSDDFSSLCGPVIDDVKL 359 (366)
Q Consensus 333 ~F~s~~~~~~~d~~~~~cGPvlD~V~v 359 (366)
.|+... ..| ...=.||||+|
T Consensus 148 afrh~~---~td----~~~l~iDDV~v 167 (167)
T PF07675_consen 148 AFRHYN---STD----AFYLMIDDVTV 167 (167)
T ss_dssp EEEEES-----S----S-EEEEEEEEE
T ss_pred EEEecc---CCC----ceEEEeccEEC
Confidence 997532 122 45778999987
No 28
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=57 Score=28.35 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=35.2
Q ss_pred eeecCCCccCCCCCCCCcEEeecceEEEEeCCCCcCCCCCeEEEe--cCCCcceEE
Q 017767 212 GVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFSVPQGKRAIEL--VAGKESAIA 265 (366)
Q Consensus 212 gvl~p~~~~~~~s~ipgW~i~g~~~VeyI~s~~~~vP~G~~aVeL--~~G~e~~I~ 265 (366)
.|+.|.....++++=-+=++.+-..|.+++ ..|.|++||+| +-|.+++|.
T Consensus 35 Rv~sPsAEvqghgp~q~v~v~gkr~V~i~~----i~p~GnYavri~FdDgHDsGiy 86 (120)
T COG3536 35 RVLSPSAEVQGHGPGQRVLVPGKRNVQIRD----IEPVGNYAVRILFDDGHDSGIY 86 (120)
T ss_pred HhcCchHHhcccCCCCceeeeccccceEEE----eEecCceEEEEEecCCcccCcc
Confidence 366666666677765566666656788887 67899999998 456666663
No 29
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.95 E-value=3.6e+02 Score=22.58 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=37.4
Q ss_pred EccCCCEEEEEEEeccCCCcCCcceEEEEEcCcceEEEEeeecCCcceEEEEEEEEEee-ceEEEEEEeccc
Q 017767 269 RTIPGKTYTLTFTVGDANNACAGSMVVEAFAGKGTIKVPYESKGKGGFKRAVLRFVAVS-NRTRIMFLSTFY 339 (366)
Q Consensus 269 ~t~~G~~Y~LtFslgdA~~~c~~~~~v~v~~g~~~~~~~y~s~G~~~w~~~s~~F~A~~-~~t~l~F~s~~~ 339 (366)
...+|..|...|.+.+ ....+ .-+++ .- +..+.|+=.+.+......+.|++.+ ..|+|++...+.
T Consensus 36 ~~~~Gg~~~~~~~~~~--~~~~g-~~~~~-~p--~~~l~~~w~~~~~~s~v~~~l~~~~~ggT~ltl~~~~~ 101 (136)
T cd08901 36 RLEEGKTVTWDWEMYG--ASVPV-NVLEI-EP--NKRIVIEWGDPGEPTTVEWTFEELDDGRTFVTITESGF 101 (136)
T ss_pred cccCCCEEEEEEEccC--CceEE-EEEEE-cC--CCEEEEEecCCCCCEEEEEEEEECCCCcEEEEEEECCC
Confidence 4457888888887632 21111 11221 12 2233333222234577889999988 889999988754
No 30
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=23.61 E-value=3.2e+02 Score=25.59 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.3
Q ss_pred EccCCCEEEEEEEec
Q 017767 269 RTIPGKTYTLTFTVG 283 (366)
Q Consensus 269 ~t~~G~~Y~LtFslg 283 (366)
.+.+|.+|.|+|.+.
T Consensus 191 ~v~~~~~y~lt~~~~ 205 (235)
T PF14900_consen 191 NVKAGDHYKLTFDPS 205 (235)
T ss_pred cccCceEEEEEEeec
Confidence 577999999999975
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.53 E-value=4.7e+02 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=19.8
Q ss_pred eEEEEEEEEEeeceEEEEEEeccc
Q 017767 316 FKRAVLRFVAVSNRTRIMFLSTFY 339 (366)
Q Consensus 316 w~~~s~~F~A~~~~t~l~F~s~~~ 339 (366)
-....+.|++....|+|+|...+.
T Consensus 97 ~~~v~~~~~~~~~~T~lt~~~~~~ 120 (146)
T cd08895 97 EMTMTWTLSPVSGGTDVTIVQSGI 120 (146)
T ss_pred eEEEEEEEEecCCCEEEEEEEeCC
Confidence 346889999999999999988753
No 32
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=22.16 E-value=2.4e+02 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.564 Sum_probs=29.9
Q ss_pred CceEEecCCCceEEEcCCCceeEEEEEecCCcEEEEEEEecc
Q 017767 71 GDMLLVVPEGAFAVRLGNEASVKQRIKVIKGNYYSISFNFAR 112 (366)
Q Consensus 71 g~m~~~vpeG~~av~Lg~~~~I~Q~~~t~~G~~Y~lTFsaa~ 112 (366)
-.-++.+|.|.+.++.|+.. ..+++.+|.+|+|-....+
T Consensus 59 ~~~~~~~~~G~~~~~~ggk~---~~~~v~~~~f~TvV~~~~g 97 (181)
T PF11182_consen 59 ASSYFFVPPGGYTLQVGGKQ---AEVDVAPGEFYTVVLRPGG 97 (181)
T ss_pred ccceeecCCCceeEeecCcc---cceEecCCceEEEEEcCCC
Confidence 33468899999998887543 3567799999999887653
No 33
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=21.57 E-value=1.6e+02 Score=23.92 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.5
Q ss_pred EEecCCcEEEEEEEeccc
Q 017767 96 IKVIKGNYYSISFNFART 113 (366)
Q Consensus 96 ~~t~~G~~Y~lTFsaa~t 113 (366)
+...+|..|+++|....+
T Consensus 62 ~~~~pG~t~~~tF~~~G~ 79 (99)
T TIGR02656 62 LLNSPGESYEVTFSTPGT 79 (99)
T ss_pred cccCCCCEEEEEeCCCEE
Confidence 346789999999987544
No 34
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=20.95 E-value=1.5e+02 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.494 Sum_probs=29.7
Q ss_pred ecCCcEEEEEEEeccccccc--ceEEEEECCccceeeeeeeecccceeE
Q 017767 98 VIKGNYYSISFNFARTCAQE--ESLNISVAPEWGVLPLQTLYSSNGWDT 144 (366)
Q Consensus 98 t~~G~~Y~lTFsaa~tca~~--~~l~vsv~~~~~~~~~qt~y~~~gw~~ 144 (366)
...|++|.+||..-.-|.+. .+|+|.++.-.... .-.-.-||..
T Consensus 12 a~aGs~~~~tfrVPhecdg~~Ttkv~V~lP~gv~~v---~p~p~pGWt~ 57 (152)
T cd08545 12 AAAGSYYKLTFRVPHGCDGAATTKVRVKLPEGVASV---KPQPKPGWTV 57 (152)
T ss_pred CCCCceEEEEEEccCCCCCCCceEEEEEcCCCcccc---ceecCCCCEE
Confidence 45699999999999999764 57788887621111 1123557865
Done!