Query 017769
Match_columns 366
No_of_seqs 240 out of 1456
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01924 cyclophilin_TLP40_like 99.9 3.8E-26 8.3E-31 207.2 10.7 110 254-363 5-115 (176)
2 KOG0883 Cyclophilin type, U bo 99.9 2.6E-26 5.6E-31 227.6 5.8 205 107-365 145-372 (518)
3 COG0652 PpiB Peptidyl-prolyl c 99.9 2.4E-23 5.3E-28 186.6 8.9 86 241-363 2-91 (158)
4 KOG0881 Cyclophilin type pepti 99.9 9.4E-23 2E-27 177.0 5.2 94 239-365 10-104 (164)
5 cd01928 Cyclophilin_PPIL3_like 99.9 7.2E-22 1.6E-26 175.2 10.7 92 240-364 2-94 (153)
6 cd01925 cyclophilin_CeCYP16-li 99.9 1.6E-21 3.4E-26 175.9 11.2 97 233-364 2-99 (171)
7 cd01927 cyclophilin_WD40 cyclo 99.9 1.5E-21 3.3E-26 172.1 10.2 85 255-364 6-91 (148)
8 cd01923 cyclophilin_RING cyclo 99.9 1.6E-21 3.4E-26 173.9 10.3 91 241-364 2-93 (159)
9 cd01922 cyclophilin_SpCYP2_lik 99.8 2.6E-21 5.7E-26 170.4 9.9 86 255-365 6-92 (146)
10 KOG0885 Peptidyl-prolyl cis-tr 99.8 3.6E-21 7.8E-26 190.3 8.1 101 229-364 5-106 (439)
11 cd01921 cyclophilin_RRM cyclop 99.8 1.6E-20 3.4E-25 168.4 9.7 93 255-365 6-99 (166)
12 KOG0546 HSP90 co-chaperone CPR 99.8 6E-21 1.3E-25 188.5 7.4 100 237-365 7-119 (372)
13 KOG0880 Peptidyl-prolyl cis-tr 99.8 1.6E-20 3.4E-25 173.0 9.0 108 227-365 30-143 (217)
14 PRK10903 peptidyl-prolyl cis-t 99.8 1.4E-19 3E-24 166.3 10.8 61 236-304 26-87 (190)
15 cd01920 cyclophilin_EcCYP_like 99.8 4E-19 8.7E-24 157.8 9.3 50 255-304 6-56 (155)
16 PRK10791 peptidyl-prolyl cis-t 99.8 9E-19 2E-23 157.4 10.0 54 241-302 2-56 (164)
17 KOG0882 Cyclophilin-related pe 99.8 2.6E-19 5.6E-24 180.7 6.4 86 255-365 413-499 (558)
18 PLN03149 peptidyl-prolyl isome 99.8 1.8E-18 3.9E-23 158.4 11.4 109 228-365 8-126 (186)
19 PTZ00060 cyclophilin; Provisio 99.8 2.8E-18 6E-23 156.6 11.2 99 237-364 14-123 (183)
20 cd01926 cyclophilin_ABH_like c 99.8 2.8E-18 6E-23 153.5 10.9 86 254-365 13-108 (164)
21 KOG0884 Similar to cyclophilin 99.8 1E-18 2.2E-23 151.2 7.2 93 240-365 2-95 (161)
22 KOG0879 U-snRNP-associated cyc 99.7 1.1E-18 2.4E-23 153.2 5.7 100 237-365 9-118 (177)
23 cd00317 cyclophilin cyclophili 99.7 2.5E-17 5.5E-22 142.8 10.1 84 255-364 6-90 (146)
24 PTZ00221 cyclophilin; Provisio 99.7 8.6E-17 1.9E-21 153.7 11.1 97 237-365 51-160 (249)
25 KOG0111 Cyclophilin-type pepti 99.7 1.6E-17 3.5E-22 155.8 4.0 98 239-365 137-239 (298)
26 PF00160 Pro_isomerase: Cyclop 99.6 1.1E-15 2.4E-20 133.5 10.4 59 240-305 1-60 (155)
27 KOG0415 Predicted peptidyl pro 99.6 4E-16 8.6E-21 154.2 8.1 97 241-366 3-103 (479)
28 KOG0865 Cyclophilin type pepti 99.3 2.5E-12 5.5E-17 116.7 4.8 98 239-365 4-109 (167)
29 PF05757 PsbQ: Oxygen evolving 96.7 0.00064 1.4E-08 63.9 1.7 158 53-213 28-197 (202)
30 PLN02729 PSII-Q subunit 95.9 0.1 2.2E-06 49.6 11.3 157 51-213 47-215 (220)
31 TIGR03042 PS_II_psbQ_bact phot 95.9 0.035 7.5E-07 49.8 7.6 92 117-211 44-135 (142)
32 PLN02956 PSII-Q subunit 95.6 0.22 4.8E-06 46.5 12.0 87 123-212 94-180 (185)
33 PLN02999 photosystem II oxygen 95.4 0.37 8E-06 45.0 12.5 93 118-213 93-185 (190)
34 smart00502 BBC B-Box C-termina 57.4 38 0.00081 27.6 6.2 73 139-211 40-122 (127)
35 PF02538 Hydantoinase_B: Hydan 51.9 45 0.00098 35.6 7.2 125 130-265 143-273 (527)
36 KOG0882 Cyclophilin-related pe 49.9 5.6 0.00012 42.2 0.1 46 256-301 112-158 (558)
37 PF15368 BioT2: Spermatogenesi 49.3 40 0.00086 31.1 5.4 22 102-123 58-79 (170)
38 cd05511 Bromo_TFIID Bromodomai 46.0 45 0.00098 28.3 5.0 67 117-191 42-111 (112)
39 PF09177 Syntaxin-6_N: Syntaxi 38.2 75 0.0016 26.1 5.1 28 174-201 45-74 (97)
40 PF14276 DUF4363: Domain of un 37.2 1.7E+02 0.0037 24.6 7.2 79 118-206 25-103 (121)
41 PRK11820 hypothetical protein; 36.9 99 0.0021 30.8 6.5 84 128-213 107-193 (288)
42 PF12903 DUF3830: Protein of u 30.0 56 0.0012 29.7 3.2 43 255-300 7-52 (147)
43 PRK10807 paraquat-inducible pr 24.4 2.3E+02 0.0049 30.7 7.1 81 110-193 407-491 (547)
44 PF02153 PDH: Prephenate dehyd 24.2 1.1E+02 0.0025 29.1 4.5 52 150-202 204-255 (258)
45 PF08559 Cut8_C: Cut8 six-heli 23.7 1.3E+02 0.0027 27.0 4.3 76 146-222 2-80 (143)
46 COG2900 SlyX Uncharacterized p 23.3 3E+02 0.0065 22.3 5.9 56 169-229 16-72 (72)
47 PRK10920 putative uroporphyrin 23.3 74 0.0016 33.1 3.1 84 126-216 136-219 (390)
48 PF02646 RmuC: RmuC family; I 23.3 4.5E+02 0.0098 26.0 8.6 77 176-271 49-130 (304)
49 KOG1086 Cytosolic sorting prot 22.7 3.7E+02 0.0081 29.0 8.0 62 118-190 201-262 (594)
50 PF14591 AF0941-like: AF0941-l 22.6 1.3E+02 0.0028 26.9 4.0 66 115-192 15-82 (127)
51 PF01865 PhoU_div: Protein of 21.9 2.8E+02 0.0061 25.3 6.4 64 111-193 73-136 (214)
52 TIGR00153 conserved hypothetic 20.5 4.6E+02 0.01 24.3 7.6 24 110-133 75-98 (216)
No 1
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.93 E-value=3.8e-26 Score=207.22 Aligned_cols=110 Identities=68% Similarity=1.090 Sum_probs=102.2
Q ss_pred cceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCC
Q 017769 254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF 332 (366)
Q Consensus 254 ~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~Pi 332 (366)
+.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+.|+.++..+.+|+||+..+.+.|+
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~ 84 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPV 84 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCc
Confidence 48999999999999999999999999999999999999 99999999999988888899999889999999999899999
Q ss_pred CCcchhhhhcccccCCCCCCCceEEEeecCC
Q 017769 333 YGATLEELGLYKAQTKLPFNAFGTMAMARDC 363 (366)
Q Consensus 333 Yg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~ 363 (366)
|+.++++.+...+.+.++||++|+|||||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~ 115 (176)
T cd01924 85 YGKTLEEAGRYDEQPVLPFNAFGAIAMARTE 115 (176)
T ss_pred cCcccccccccccccccccCCCCeEEEccCC
Confidence 9988775555567889999999999999986
No 2
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-26 Score=227.58 Aligned_cols=205 Identities=19% Similarity=0.314 Sum_probs=151.2
Q ss_pred hhhcCCCCCHhHHHHhhh--Hhh--------hhhhhhcccCcCChhhhhhHH-HHHHHHhcccchhhccccccchHHHHH
Q 017769 107 LRYALPIDNKAVREVQKP--LED--------ITDSLKIAGVKALDPVERNVR-QASRTLKQGKSLIVEGLAESKKEHGME 175 (366)
Q Consensus 107 LR~alPi~n~~ir~iQ~~--LE~--------i~~~Lr~~~~K~w~~~~~~v~-~a~~~l~~~~~~il~~vp~~~~~~~~~ 175 (366)
|....|+...||.+||++ ||. |..+||+-..-. .-+.+|.. ..++.+|.+..+.|..|..+.++.-+.
T Consensus 145 LltdepFtR~DiItiQdP~~lek~~~~~F~hvk~~lk~~~eee-k~~~~dpa~~~~k~~n~e~ks~l~el~k~~~p~~~~ 223 (518)
T KOG0883|consen 145 LLTDEPFTRADIITIQDPNNLEKFNMSDFYHVKKNLKTADEEE-KKAKKDPALGYIKAMNLETKSTLPELSKEYQPKKSI 223 (518)
T ss_pred hhccCCcchhceeeecCcchhhccchhhHHHHhcccccCcHHH-HHhhcCchhhhhhhcchhhhhhhHHHhhhhccchhh
Confidence 556789999999999998 776 566666632211 11222322 566677766666666666555543222
Q ss_pred HHHHHHHhHHHHHHHHhhcCccchhhHH-----------HHHHHHhhchhhhcccCCCCCCCcccccCCCCCCceEEEEE
Q 017769 176 LLQKLEAGMDELQQIVEDRDRDAVAPKQ-----------KELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMK 244 (366)
Q Consensus 176 l~~~l~~~l~~l~~~~~~kd~d~~~~~~-----------~~~L~~v~~lE~~~v~~~p~~vP~~y~~~P~L~GratV~~~ 244 (366)
. . ...+..|++..++ ..++-.|+..|...+. .+-..+-+.+...+|.+.
T Consensus 224 a-~------------t~~~~aD~~naahyStG~vaasfTSTam~PvT~neaaiid-------~d~~ry~rvKkkgyvrl~ 283 (518)
T KOG0883|consen 224 A-S------------TMKRSADKINAAHYSTGAVAASFTSTAMTPVTKNEAAIID-------EDDVRYTRVKKKGYVRLV 283 (518)
T ss_pred h-h------------hccccchhhhhhhccccceeceeccceeeecccchhhhcc-------chhhhhccccccceEEEe
Confidence 1 0 0112233333332 2256677777777664 233355567778899999
Q ss_pred ecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchh
Q 017769 245 VKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEI 323 (366)
Q Consensus 245 t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI 323 (366)
|+ .|+|.|||+.+.||.+|+||+.||++|||+|+.|||. .+||||||||+|+|.|
T Consensus 284 Tn--------~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~G---------------- 339 (518)
T KOG0883|consen 284 TN--------HGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRG---------------- 339 (518)
T ss_pred cc--------CCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCC----------------
Confidence 98 7999999999999999999999999999999999999 9999999999999888
Q ss_pred cccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 324 MVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 324 ~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+++|||.+|+|+ ..+.|.|+.||+|+|||+.+.
T Consensus 340 -----GeSiWgKpFkDE----f~~~l~H~gRGvlSMANsGpn 372 (518)
T KOG0883|consen 340 -----GESIWGKPFKDE----FCSNLSHDGRGVLSMANSGPN 372 (518)
T ss_pred -----CccccCCccccc----cCCCCCcCCcceEeeccCCCC
Confidence 489999999987 568899999999999999764
No 3
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-23 Score=186.64 Aligned_cols=86 Identities=35% Similarity=0.493 Sum_probs=72.6
Q ss_pred EEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCC-CCCccCCCCCcccc
Q 017769 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGP-AEGFIDPSTEKTRT 318 (366)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~-g~G~~dp~tg~~~~ 318 (366)
|.|+|+ +|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+. |.| |+++.
T Consensus 2 v~~~t~--------~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~g------g~~~~ 67 (158)
T COG0652 2 VILETN--------KGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTG------GPGPP 67 (158)
T ss_pred ceeecc--------CCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCC------CCCCC
Confidence 567777 7999999999999999999999999999999999999 9999999999876 655 45566
Q ss_pred ccchhcccCCCCCCCCcchhhhhcccccCCCCC--CCceEEEeecCC
Q 017769 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPF--NAFGTMAMARDC 363 (366)
Q Consensus 319 iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf--~~~GtLAMArs~ 363 (366)
++.|+.. +.| |.+|+|||||+.
T Consensus 68 f~~E~~~-----------------------~~~~~~~~G~lsMA~~g 91 (158)
T COG0652 68 FKDENFA-----------------------LNGDRHKRGTLSMARAG 91 (158)
T ss_pred Ccccccc-----------------------cccccCCcceEeEcccC
Confidence 6666532 122 469999999987
No 4
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.4e-23 Score=176.96 Aligned_cols=94 Identities=28% Similarity=0.505 Sum_probs=87.4
Q ss_pred eEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccc
Q 017769 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR 317 (366)
Q Consensus 239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~ 317 (366)
+.|+++|+ .|.|++|||-..||.||.||..|+++|||||..|||+ ++||||||||+|+|.|
T Consensus 10 ~~V~LeTs--------mG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRG---------- 71 (164)
T KOG0881|consen 10 PNVTLETS--------MGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRG---------- 71 (164)
T ss_pred CeEEEeec--------ccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCC----------
Confidence 47888998 7999999999999999999999999999999999999 9999999999999887
Q ss_pred cccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 318 ~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+.+|||..|+|+ ..+.|.|...|.|+|||+.++
T Consensus 72 -----------GaSIYG~kF~DE----i~~dLkhTGAGILsMANaGPn 104 (164)
T KOG0881|consen 72 -----------GASIYGDKFEDE----IHSDLKHTGAGILSMANAGPN 104 (164)
T ss_pred -----------ccccccchhhhh----hhhhhcccchhhhhhhccCCC
Confidence 478999999987 467899999999999999875
No 5
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.87 E-value=7.2e-22 Score=175.21 Aligned_cols=92 Identities=28% Similarity=0.502 Sum_probs=78.9
Q ss_pred EEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCcccc
Q 017769 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRT 318 (366)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~ 318 (366)
+|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||+|||||.++|.|
T Consensus 2 ~v~l~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g----------- 62 (153)
T cd01928 2 SVTLHTN--------LGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG----------- 62 (153)
T ss_pred EEEEEEc--------cccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCC-----------
Confidence 4678887 7999999999999999999999999999999999999 9999999999877655
Q ss_pred ccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 319 iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+.++|+..++++. .+.++|+++|+|||||+.+
T Consensus 63 ----------~~~~~~~~~~~e~----~~~~~~~~~G~v~ma~~~~ 94 (153)
T cd01928 63 ----------GESIWGKKFEDEF----RETLKHDSRGVVSMANNGP 94 (153)
T ss_pred ----------CCccCCCcccccc----ccCCCcCCCcEEEEeeCCC
Confidence 2356777777652 3568899999999999764
No 6
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.86 E-value=1.6e-21 Score=175.88 Aligned_cols=97 Identities=31% Similarity=0.521 Sum_probs=82.1
Q ss_pred CCCCCceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCC
Q 017769 233 PLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDP 311 (366)
Q Consensus 233 P~L~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp 311 (366)
|+-+| .|.|+|+ .|+|+|+||.+.||+||+||++||+.|||||+.|||| ++||+||||+.++|.|
T Consensus 2 ~~~~~--~v~i~Ts--------~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g---- 67 (171)
T cd01925 2 PPTTG--KVILKTT--------AGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTG---- 67 (171)
T ss_pred CCccc--EEEEEEc--------cccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCcc----
Confidence 44444 5678888 7999999999999999999999999999999999999 9999999999877655
Q ss_pred CCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 312 STEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 312 ~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+.++|+..++++ ..+.+.|+.+|+|||||+.+
T Consensus 68 -----------------~~s~~g~~~~~E----~~~~~~~~~~G~l~ma~~g~ 99 (171)
T cd01925 68 -----------------GESIYGEPFKDE----FHSRLRFNRRGLVGMANAGD 99 (171)
T ss_pred -----------------CcccCCCccCcc----cccCcCCCCCcEEEECcCCC
Confidence 246777777765 24567899999999999764
No 7
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.86 E-value=1.5e-21 Score=172.09 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=74.2
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiY 333 (366)
.|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++||+||||+.++|.| +.++|
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g---------------------~~~~~ 64 (148)
T cd01927 6 KGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTG---------------------GESIW 64 (148)
T ss_pred cccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------CCccc
Confidence 7999999999999999999999999999999999999 9999999999876655 24667
Q ss_pred CcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 334 GATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 334 g~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+.+++++ ..+.++|+.+|+|||||+.+
T Consensus 65 ~~~~~~e----~~~~~~h~~~G~l~ma~~~~ 91 (148)
T cd01927 65 GKEFEDE----FSPSLKHDRPYTLSMANAGP 91 (148)
T ss_pred CCccccc----cccccCcCCCeEEEEeeCCC
Confidence 7777664 24578899999999998764
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.86 E-value=1.6e-21 Score=173.90 Aligned_cols=91 Identities=25% Similarity=0.528 Sum_probs=79.1
Q ss_pred EEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccc
Q 017769 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTI 319 (366)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~i 319 (366)
|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||+ ++|++||||+.++|.|
T Consensus 2 v~~~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~------------ 61 (159)
T cd01923 2 VRLHTN--------KGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG------------ 61 (159)
T ss_pred EEEEEc--------cccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCC------------
Confidence 678887 7999999999999999999999999999999999999 9999999999876655
Q ss_pred cchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 320 PLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 320 PlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+.++|+..++++ ..+.++|+.+|+|||||+..
T Consensus 62 ---------~~~~~g~~~~~E----~~~~~~h~~~G~v~ma~~~~ 93 (159)
T cd01923 62 ---------GESIWGKPFKDE----FKPNLSHDGRGVLSMANSGP 93 (159)
T ss_pred ---------CccccCCccCcc----cccCcCcCCCcEEEEeeCCC
Confidence 246677777764 34568899999999999864
No 9
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.85 E-value=2.6e-21 Score=170.38 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=74.7
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiY 333 (366)
.|+|+|+||.+.||+||+||++||+.|||||+.|||+ ++||+||||+.++|.| +.++|
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~---------------------~~~~~ 64 (146)
T cd01922 6 MGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRG---------------------GASIY 64 (146)
T ss_pred cccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------ccccc
Confidence 7999999999999999999999999999999999999 9999999999876554 24667
Q ss_pred CcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 334 GATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 334 g~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+.+|+++ ..+.++|+.+|+|||||+.++
T Consensus 65 ~~~~~~e----~~~~~~h~~~G~l~ma~~~~~ 92 (146)
T cd01922 65 GKKFEDE----IHPELKHTGAGILSMANAGPN 92 (146)
T ss_pred CCCcccc----cccCcCCCCCeEEEEeeCCCC
Confidence 7777764 246788999999999997643
No 10
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-21 Score=190.32 Aligned_cols=101 Identities=32% Similarity=0.519 Sum_probs=90.8
Q ss_pred cccCCCCCCceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCC
Q 017769 229 YQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG 307 (366)
Q Consensus 229 y~~~P~L~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G 307 (366)
|-..|..+| .|.+.|+ .|+|.|||+...||++|.||++||..|||+|+.|||+ |||++|||||+|+|+|
T Consensus 5 ~~~EP~ttg--kvil~TT--------~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtG 74 (439)
T KOG0885|consen 5 YNLEPPTTG--KVILKTT--------KGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTG 74 (439)
T ss_pred cccCCCccc--eEEEEec--------cCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCC
Confidence 556677776 4555677 6999999999999999999999999999999999999 9999999999999988
Q ss_pred ccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 308 FIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 308 ~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+++|||.+|.|+ ..|.|.|+++|.|+|||..-
T Consensus 75 ---------------------gesiyg~~fadE----~h~Rlrf~rrGlvgmana~~ 106 (439)
T KOG0885|consen 75 ---------------------GESIYGRPFADE----FHPRLRFNRRGLVGMANAGN 106 (439)
T ss_pred ---------------------ccccccccchhh----cCcceeeeccceeeecccCC
Confidence 489999999987 57999999999999999854
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.83 E-value=1.6e-20 Score=168.38 Aligned_cols=93 Identities=23% Similarity=0.212 Sum_probs=71.4
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiY 333 (366)
.|+|+|+||.+.||+||+||++||+.|||||+.|||| ++|||||||+.+++.|. ..++. ......
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~--------~~~~~------~~~~~~ 71 (166)
T cd01921 6 LGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGG--------ESIYS------QLYGRQ 71 (166)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCC--------ccccc------cccccc
Confidence 7999999999999999999999999999999999999 99999999998776652 11110 000011
Q ss_pred CcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 334 GATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 334 g~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+..++++ ..+.++|+++|+|||||+.++
T Consensus 72 ~~~~~~e----~~~~~~h~~~G~l~ma~~~~~ 99 (166)
T cd01921 72 ARFFEPE----ILPLLKHSKKGTVSMVNAGDN 99 (166)
T ss_pred CcccCcc----cCCccccCCceEEEEeECCCC
Confidence 1223332 246789999999999998653
No 12
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6e-21 Score=188.53 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=87.3
Q ss_pred CceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHh--cc---------CCCCceeeee-CCceEecCCCC-C
Q 017769 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RH---------FYDGMEIQRA-DGFVVQTGDPE-G 303 (366)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~G---------fYDG~~FhRV-~gFVIQgGDp~-g 303 (366)
++..|.|+++++.. ..|+|+|+||.+.+|+||+||+.||. .| .|.|+.|||| .+|||||||.+ |
T Consensus 7 ~~pr~ffDISI~ge---~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g 83 (372)
T KOG0546|consen 7 TNPRVFFDISIGGE---PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG 83 (372)
T ss_pred CCceEEEEEEeCCc---ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC
Confidence 56778888887543 48999999999999999999999995 44 4999999999 99999999986 7
Q ss_pred CCCCccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 304 ~g~G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+|+| +++|||.+|+|+ ++.|+|+.+|+|+|||..++
T Consensus 84 nGtG---------------------GeSIYG~~FdDE-----nF~lKHdrpflLSMAN~GpN 119 (372)
T KOG0546|consen 84 NGTG---------------------GESIYGEKFDDE-----NFELKHDRPFLLSMANRGPN 119 (372)
T ss_pred CCCC---------------------cccccccccccc-----cceeccCcchhhhhhcCCCC
Confidence 8777 589999999996 56799999999999998764
No 13
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-20 Score=172.96 Aligned_cols=108 Identities=25% Similarity=0.392 Sum_probs=91.1
Q ss_pred cccccCCCCCCceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHh---ccC-CCCceeeee-CCceEecCCC
Q 017769 227 EEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ---RHF-YDGMEIQRA-DGFVVQTGDP 301 (366)
Q Consensus 227 ~~y~~~P~L~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~---~Gf-YDG~~FhRV-~gFVIQgGDp 301 (366)
..|..-|..+.++...|+... ...|+|+|.|||..+|+||+||+.||. +|| |.|+.|||| |+|||||||.
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~-----~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~ 104 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGG-----EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDF 104 (217)
T ss_pred cccCCCCcceeEEEEEEEECC-----EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcc
Confidence 467778888876666665542 247999999999999999999999997 445 999999999 9999999998
Q ss_pred C-CCCCCccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 302 E-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 302 ~-g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+ |+|+| +.++||++|+|| ++.|.|+.+|.|||||..+|
T Consensus 105 t~g~gtG---------------------g~SIyG~~F~DE-----Nf~LkH~rpG~lSMAn~GpD 143 (217)
T KOG0880|consen 105 TKGDGTG---------------------GKSIYGEKFPDE-----NFKLKHDRPGRLSMANAGPD 143 (217)
T ss_pred ccCCCCC---------------------CeEeecCCCCCc-----cceeecCCCceEeeeccCCC
Confidence 6 66776 368999999986 56799999999999997665
No 14
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.80 E-value=1.4e-19 Score=166.31 Aligned_cols=61 Identities=31% Similarity=0.524 Sum_probs=57.0
Q ss_pred CCceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCC
Q 017769 236 KGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGP 304 (366)
Q Consensus 236 ~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~ 304 (366)
.++.+|.|+|+ .|+|+|+||++.||+||+||++||+.|||||+.|||+ ++||+||||+.+.
T Consensus 26 ~~~~~v~l~T~--------~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~ 87 (190)
T PRK10903 26 KGDPHVLLTTS--------AGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ 87 (190)
T ss_pred CCCcEEEEEec--------cccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCC
Confidence 57778999998 7999999999999999999999999999999999999 9999999998653
No 15
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.78 E-value=4e-19 Score=157.84 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=48.1
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGP 304 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~ 304 (366)
.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||+||||+...
T Consensus 6 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~ 56 (155)
T cd01920 6 LGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPD 56 (155)
T ss_pred ceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCC
Confidence 7999999999999999999999999999999999999 9999999998754
No 16
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.77 E-value=9e-19 Score=157.37 Aligned_cols=54 Identities=30% Similarity=0.449 Sum_probs=50.8
Q ss_pred EEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCC
Q 017769 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPE 302 (366)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~ 302 (366)
|.|+|+ .|+|+|+||.+.||+||+||++||+.|||||+.|||| ++|||||||+.
T Consensus 2 v~~~T~--------~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~ 56 (164)
T PRK10791 2 VTFHTN--------HGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE 56 (164)
T ss_pred EEEEEc--------cccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC
Confidence 467787 7999999999999999999999999999999999999 99999999864
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-19 Score=180.75 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=81.6
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiY 333 (366)
.|+|.|.||++.+|+||+||-..+++|||||..|||| .|||||+|||.|+|+| +++||
T Consensus 413 ~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtg---------------------gesiw 471 (558)
T KOG0882|consen 413 QGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTG---------------------GESIW 471 (558)
T ss_pred ccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCC---------------------Ccccc
Confidence 8999999999999999999999999999999999999 9999999999999988 48999
Q ss_pred CcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 334 GATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 334 g~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
|..|||+ ..|.|.|+++=+|+|||+.++
T Consensus 472 g~dfede----fh~~lrhdrpft~smanag~n 499 (558)
T KOG0882|consen 472 GKDFEDE----FHPNLRHDRPFTVSMANAGPN 499 (558)
T ss_pred cccchhh----cCcccccCCCceEEecccCCC
Confidence 9999997 568999999999999998764
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.77 E-value=1.8e-18 Score=158.37 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=83.8
Q ss_pred ccccCCCCCCceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhc-----cC---CCCceeeee-CCceEec
Q 017769 228 EYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQR-----HF---YDGMEIQRA-DGFVVQT 298 (366)
Q Consensus 228 ~y~~~P~L~GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~-----Gf---YDG~~FhRV-~gFVIQg 298 (366)
+|...|.-.++..|.|+++... ...|+|+|+||.+.||+||+||++||+. |+ |+++.|||| ++|+|||
T Consensus 8 ~~~~~~~~~~~~~v~~di~~~~---~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqg 84 (186)
T PLN03149 8 EWHLRPPNPKNPVVFFDVTIGG---IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQG 84 (186)
T ss_pred EeeecCCCCCCCEEEEEEeeCC---cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEc
Confidence 4555554444566777776432 2479999999999999999999999975 44 999999999 9999999
Q ss_pred CCCC-CCCCCccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 299 GDPE-GPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 299 GDp~-g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
||+. ++|.| +.++|+..|+++ ...+.|+.+|+|||||+.++
T Consensus 85 Gd~~~~~g~g---------------------~~~~~g~~f~~e-----~~~~~h~~~G~lsma~~g~~ 126 (186)
T PLN03149 85 GDFLKGDGTG---------------------CVSIYGSKFEDE-----NFIAKHTGPGLLSMANSGPN 126 (186)
T ss_pred CCcccCCCCC---------------------cccccCCccCCc-----ccccccCCCCEEEEeeCCCC
Confidence 9974 55554 245677777654 34578999999999998653
No 19
>PTZ00060 cyclophilin; Provisional
Probab=99.76 E-value=2.8e-18 Score=156.58 Aligned_cols=99 Identities=24% Similarity=0.310 Sum_probs=77.4
Q ss_pred CceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHh---------ccCCCCceeeee-CCceEecCCCC-CCC
Q 017769 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ---------RHFYDGMEIQRA-DGFVVQTGDPE-GPA 305 (366)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~---------~GfYDG~~FhRV-~gFVIQgGDp~-g~g 305 (366)
.+..|.|++.... ...|+|+|+||.+.||+||+||++||+ .+||||+.|||| ++|+|||||+. ++|
T Consensus 14 ~~~~v~~di~i~~---~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 14 KRPKVFFDISIDN---APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCEEEEEEEECC---EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 3445666665422 247999999999999999999999996 579999999999 99999999986 344
Q ss_pred CCccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 306 EGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 306 ~G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
.| +.++|+..++++ ...++|+.+|+|+|||+.+
T Consensus 91 ~~---------------------g~~~~g~~~~~e-----~~~~~h~~~G~lsma~~g~ 123 (183)
T PTZ00060 91 TG---------------------GESIYGRKFTDE-----NFKLKHDQPGLLSMANAGP 123 (183)
T ss_pred CC---------------------CCcccccccCCc-----cccccCCCCCEEEeccCCC
Confidence 33 245677666653 3567899999999998754
No 20
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.76 E-value=2.8e-18 Score=153.46 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=71.5
Q ss_pred cceeEEEEEeCCCChhhHHHHHHhHh--cc------CCCCceeeee-CCceEecCCCC-CCCCCccCCCCCccccccchh
Q 017769 254 DECVFRIVLDGYNAPVTAGNFVDLVQ--RH------FYDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPSTEKTRTIPLEI 323 (366)
Q Consensus 254 ~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~G------fYDG~~FhRV-~gFVIQgGDp~-g~g~G~~dp~tg~~~~iPlEI 323 (366)
..|+|+|+||.+.||+||+||++||+ +| |||++.|||+ ++|+|||||+. +++.|
T Consensus 13 ~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~---------------- 76 (164)
T cd01926 13 PAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTG---------------- 76 (164)
T ss_pred eceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCC----------------
Confidence 47999999999999999999999997 46 8999999999 99999999975 44443
Q ss_pred cccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 324 MVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 324 ~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+.++|+..++++ ...+.|+++|+|||||..++
T Consensus 77 -----~~~~~g~~~~~e-----~~~~~h~~~G~lsma~~~~~ 108 (164)
T cd01926 77 -----GKSIYGEKFPDE-----NFKLKHTGPGLLSMANAGPN 108 (164)
T ss_pred -----CCcccCCccCCC-----CccccCCCccEEEeeECCCC
Confidence 245677777653 35678889999999997643
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-18 Score=151.18 Aligned_cols=93 Identities=28% Similarity=0.462 Sum_probs=84.0
Q ss_pred EEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCcccc
Q 017769 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRT 318 (366)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~ 318 (366)
.|.+.|+ .|+|.||||.+.+|+||+||+.||-..||||..|||- +||++|+|||..+|.|
T Consensus 2 svtlht~--------~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrg----------- 62 (161)
T KOG0884|consen 2 SVTLHTD--------VGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRG----------- 62 (161)
T ss_pred eEEEeec--------cCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCC-----------
Confidence 3566776 6999999999999999999999999999999999999 9999999999988777
Q ss_pred ccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 319 IPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 319 iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+++|||.+|||+ ....|+|+.+|.|+|||+.++
T Consensus 63 ----------g~siwg~~fede----~~~~lkh~~rg~vsmanngp~ 95 (161)
T KOG0884|consen 63 ----------GNSIWGKKFEDE----YSEYLKHNVRGVVSMANNGPN 95 (161)
T ss_pred ----------CccccCCcchHH----HHHHHhhccceeEEcccCCCC
Confidence 478999999986 345799999999999999875
No 22
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-18 Score=153.23 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=87.0
Q ss_pred CceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccC--------CCCceeeee-CCceEecCCC-CCCCC
Q 017769 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHF--------YDGMEIQRA-DGFVVQTGDP-EGPAE 306 (366)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~Gf--------YDG~~FhRV-~gFVIQgGDp-~g~g~ 306 (366)
.+.+|.|++.++. ...|+|.|||+.+.+|+|++||++.|...| |++..|||| ++|||||||. .|+|+
T Consensus 9 ~nPvVF~dv~igg---~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 9 NNPVVFFDVAIGG---RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred CCCeEEEEEeeCC---EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCc
Confidence 4678999998654 357999999999999999999999997655 999999999 9999999997 47777
Q ss_pred CccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 307 GFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 307 G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
| -.+|||.+|+|+ ++.|+|+.+|.|+|||+..+
T Consensus 86 G---------------------~~sIy~~~F~DE-----NFtlkH~~PGlLSMANsG~~ 118 (177)
T KOG0879|consen 86 G---------------------VASIYGSTFPDE-----NFTLKHDGPGLLSMANSGKD 118 (177)
T ss_pred e---------------------EEEEcCCCCCCc-----ceeeecCCCceeeccccCCC
Confidence 6 258999999985 56899999999999999765
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.72 E-value=2.5e-17 Score=142.76 Aligned_cols=84 Identities=32% Similarity=0.435 Sum_probs=67.2
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccchhcccCCCCCCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFY 333 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~iPlEI~~~g~~~PiY 333 (366)
.|+|+|+||.+.+|+||+||++||+.+||||+.|||+ ++|++|+||+...+.+. ..+
T Consensus 6 ~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~----------------------~~~ 63 (146)
T cd00317 6 KGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG----------------------SGP 63 (146)
T ss_pred cCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC----------------------CcC
Confidence 6999999999999999999999999999999999999 99999999987653320 122
Q ss_pred CcchhhhhcccccCCCCCCCceEEEeecCCC
Q 017769 334 GATLEELGLYKAQTKLPFNAFGTMAMARDCL 364 (366)
Q Consensus 334 g~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~ 364 (366)
+..++++ ..+.+.|+++|+|+|+|+.+
T Consensus 64 ~~~~~~E----~~~~~~~~~~G~v~~~~~~~ 90 (146)
T cd00317 64 GYKFPDE----NFPLKYHHRRGTLSMANAGP 90 (146)
T ss_pred CCccCCc----cccCcCcCCCcEEEEeeCCC
Confidence 2333332 23444589999999999764
No 24
>PTZ00221 cyclophilin; Provisional
Probab=99.69 E-value=8.6e-17 Score=153.72 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=76.7
Q ss_pred CceEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhcc-----------CCCCceeeee-CC-ceEecCCCCC
Q 017769 237 GRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRH-----------FYDGMEIQRA-DG-FVVQTGDPEG 303 (366)
Q Consensus 237 GratV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~G-----------fYDG~~FhRV-~g-FVIQgGDp~g 303 (366)
....|.|+|++++. ..|+|+|+||.+.||+||+||+.||+.. +|+|+.|||| ++ |+||+||+.+
T Consensus 51 ~~~rVfldisig~~---~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 51 NSCRAFLDISIGDV---LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred CCCEEEEEEeeCCe---ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 34567777776432 4799999999999999999999999732 3999999999 75 8999999864
Q ss_pred CCCCccCCCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 304 ~g~G~~dp~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
.+ .++||..|+|++ +.++|+.+|+|||||+.++
T Consensus 128 ~g------------------------~s~~G~~f~dE~-----~~~~h~~~G~LsMan~Gpn 160 (249)
T PTZ00221 128 FN------------------------VSSTGTPIADEG-----YRHRHTERGLLTMISEGPH 160 (249)
T ss_pred CC------------------------ccCCCCcccCcc-----ccccCCCCCEEEeCcCCCC
Confidence 21 345677777753 4678999999999997653
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.6e-17 Score=155.83 Aligned_cols=98 Identities=27% Similarity=0.409 Sum_probs=83.0
Q ss_pred eEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhH--hccC-CCCceeeee-CCceEecCCCC-CCCCCccCCCC
Q 017769 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLV--QRHF-YDGMEIQRA-DGFVVQTGDPE-GPAEGFIDPST 313 (366)
Q Consensus 239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv--~~Gf-YDG~~FhRV-~gFVIQgGDp~-g~g~G~~dp~t 313 (366)
+.|.+.+.++.+ ..|+|++.|+.++.|+|++||+.|| ++|| |.|++|||+ |.||+||||.+ ++|+|
T Consensus 137 pqv~~~ikig~~---~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtg------ 207 (298)
T KOG0111|consen 137 PQVYHDIKIGED---RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTG------ 207 (298)
T ss_pred hHhhhheeeccc---ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCC------
Confidence 345555554332 3799999999999999999999999 5788 999999999 99999999986 67776
Q ss_pred CccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 314 EKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 314 g~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
+.+|||.+|.|+ ++.|+|+-+|+|+|||+..+
T Consensus 208 ---------------gksiygkkfdde-----nf~lkht~pgtlsmansgan 239 (298)
T KOG0111|consen 208 ---------------GKSIYGKKFDDE-----NFTLKHTMPGTLSMANSGAN 239 (298)
T ss_pred ---------------Cccccccccccc-----ceeeecCCCceeeccccCCC
Confidence 468999999985 56799999999999998653
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.64 E-value=1.1e-15 Score=133.55 Aligned_cols=59 Identities=39% Similarity=0.579 Sum_probs=53.7
Q ss_pred EEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCC
Q 017769 240 TVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPA 305 (366)
Q Consensus 240 tV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g 305 (366)
+|+|+|+. .|+|+|+||++.||+||+||++||+.|+|+|+.|||+ +++++|+||+.+.+
T Consensus 1 ~~~i~t~~-------~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~ 60 (155)
T PF00160_consen 1 FVDIETSG-------LGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNG 60 (155)
T ss_dssp EEEEEETT-------EEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSS
T ss_pred CEEEEeCC-------ccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCC
Confidence 46788841 6999999999999999999999999999999999999 99999999987654
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4e-16 Score=154.18 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=80.7
Q ss_pred EEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccc
Q 017769 241 VDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTI 319 (366)
Q Consensus 241 V~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp~g~g~G~~dp~tg~~~~i 319 (366)
|.|.|+ .|+|+|.||-...|.||.||++||+-.||+.+.||-| .+|++|+|||+|+|.|+
T Consensus 3 VlieTt--------lGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG----------- 63 (479)
T KOG0415|consen 3 VLIETT--------LGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGG----------- 63 (479)
T ss_pred EEEEee--------cccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCc-----------
Confidence 667787 7999999999999999999999999999999999999 99999999999998872
Q ss_pred cchhcccCCCCCCCCcchhhhhcc---cccCCCCCCCceEEEeecCCCCC
Q 017769 320 PLEIMVEGEKSPFYGATLEELGLY---KAQTKLPFNAFGTMAMARDCLVM 366 (366)
Q Consensus 320 PlEI~~~g~~~PiYg~t~ed~G~~---~~~p~Lpf~~~GtLAMArs~~~~ 366 (366)
+++|+....+.+.+ ...|.+.|+..|+|+|++...+|
T Consensus 64 ----------~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~ 103 (479)
T KOG0415|consen 64 ----------ESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENL 103 (479)
T ss_pred ----------ceeeeecccccchhhhhhhcccccccccceEEeecCCccc
Confidence 45555432111111 24789999999999999987654
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.5e-12 Score=116.70 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=79.3
Q ss_pred eEEEEEecccCCCCccceeEEEEEeCCCChhhHHHHHHhHh--ccC-CCCceeee-e---CCceEecCCCC-CCCCCccC
Q 017769 239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQ--RHF-YDGMEIQR-A---DGFVVQTGDPE-GPAEGFID 310 (366)
Q Consensus 239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~--~Gf-YDG~~FhR-V---~gFVIQgGDp~-g~g~G~~d 310 (366)
.+|.|++.... ...|++.++|+.+..|+|++||..|+. +|| |.+..||| + ++||+||||.+ ++|+|
T Consensus 4 ~~vf~d~~~~~---~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtg--- 77 (167)
T KOG0865|consen 4 PTVFFDIAIDG---EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTG--- 77 (167)
T ss_pred CeeeeeeeecC---ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCcc---
Confidence 45666665432 347899999999999999999998884 566 99999999 3 58999999985 45555
Q ss_pred CCCCccccccchhcccCCCCCCCCcchhhhhcccccCCCCCCCceEEEeecCCCC
Q 017769 311 PSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDCLV 365 (366)
Q Consensus 311 p~tg~~~~iPlEI~~~g~~~PiYg~t~ed~G~~~~~p~Lpf~~~GtLAMArs~~~ 365 (366)
++++|++.|+|+ +..|+|..+|.|+|||..++
T Consensus 78 ------------------gkSiy~ekF~De-----nFilkhtgpGiLSmaNagpn 109 (167)
T KOG0865|consen 78 ------------------GKSIYGEKFDDE-----NFILKHTGPGILSMANAGPN 109 (167)
T ss_pred ------------------ceEecccccCCc-----CcEEecCCCCeeehhhcCCC
Confidence 468899999885 45789999999999998764
No 29
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=96.74 E-value=0.00064 Score=63.93 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHhhcccCCcccchhhh--hcCCCCCcccccCCCCCCCHHHH---hhhcCCC---C-CHh---HHH
Q 017769 53 QKLKECAISIALAAGLITGVPAIADANINAN--INMAMPDVSVLISGPPIKDPGAL---LRYALPI---D-NKA---VRE 120 (366)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~l~~g~~i~d~~a~---LR~alPi---~-n~~---ir~ 120 (366)
..-++.++|..+|++++.+..+.+-...+.+ ..+++|....+|.-+.+.-.+.+ |+.-+=+ . ... |++
T Consensus 28 ~~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd~~l~lk~rf~~~~l~~~ea~~Rik~ 107 (202)
T PF05757_consen 28 QTSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARDFDLPLKERFYIQPLSPEEAAARIKE 107 (202)
T ss_dssp -----------------------------S-EE---------------------------TT--EE----CCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccccccchhhceecCCCCHHHHHHHHHH
Confidence 3445566664555555554333321111111 22444455565554555555665 5443211 0 122 344
Q ss_pred HhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchh
Q 017769 121 VQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVA 200 (366)
Q Consensus 121 iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~ 200 (366)
-.+.|.++.+.+-. |.|.-+..+++.-..-|..+=+.|+.+.|+++|+....|.++|=..+++|..++..||..++.
T Consensus 108 sa~~L~~lk~lIdk---~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~a~ 184 (202)
T PF05757_consen 108 SAKRLLSLKELIDK---KSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPEAE 184 (202)
T ss_dssp HHHHHCCCHHHHHT---T-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44446667777755 899999999987777888888999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHhhch
Q 017769 201 PKQKELLNYVGGV 213 (366)
Q Consensus 201 ~~~~~~L~~v~~l 213 (366)
...++++..+.++
T Consensus 185 ~~Y~~t~~~Ldev 197 (202)
T PF05757_consen 185 KYYADTVKALDEV 197 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665543
No 30
>PLN02729 PSII-Q subunit
Probab=95.95 E-value=0.1 Score=49.64 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=108.1
Q ss_pred CcchhhHHHHHHHHHHHHhhcccCCcccchhhh----hcCCCCCcccccC-CCCCCCHHHHhhhcCCC---CC-HhHHHH
Q 017769 51 PFQKLKECAISIALAAGLITGVPAIADANINAN----INMAMPDVSVLIS-GPPIKDPGALLRYALPI---DN-KAVREV 121 (366)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~l~~-g~~i~d~~a~LR~alPi---~n-~~ir~i 121 (366)
....-+..++|++ |++|+.++.+-+ ..+.+ ..+++|..+.+.+ .|.-.-.+..|+.-.=+ .- ..+-+|
T Consensus 47 ~~~~~rr~~lgl~-a~~l~~~s~~~~--~~A~~~~i~~~~P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~Ri 123 (220)
T PLN02729 47 SFQTTRRLALGLA-SIALIGNSGNGV--SLAEDNGFWLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRV 123 (220)
T ss_pred hhhhhHHHHHHHH-HHHHhcchhhhH--HHhcccCceeCCCCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHH
Confidence 4455567778876 778877754332 22222 2233233344433 23334456778765422 11 234444
Q ss_pred hhhHh---hhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccc
Q 017769 122 QKPLE---DITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDA 198 (366)
Q Consensus 122 Q~~LE---~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~ 198 (366)
...-+ .+.+.+- .|.|.-+-.+++....-|..+=+.|+.+.|.+.|+.-..|.++|-+.+++|..++..|+..+
T Consensus 124 K~sA~dLl~vKdLId---~~sW~yVq~~LRLKAsyL~yDL~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~e 200 (220)
T PLN02729 124 KKYAFDLLALEDLIG---PDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSE 200 (220)
T ss_pred HHHHHHHHHHHHhhC---cchHHHHHHHHHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHH
Confidence 44433 3555553 38999999999998999999999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHhhch
Q 017769 199 VAPKQKELLNYVGGV 213 (366)
Q Consensus 199 ~~~~~~~~L~~v~~l 213 (366)
+...-.+++..+.++
T Consensus 201 ae~yY~~Tv~aLdeV 215 (220)
T PLN02729 201 TESSYKDTKTLLQEV 215 (220)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777766666544
No 31
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=95.87 E-value=0.035 Score=49.79 Aligned_cols=92 Identities=7% Similarity=0.147 Sum_probs=80.1
Q ss_pred hHHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCc
Q 017769 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDR 196 (366)
Q Consensus 117 ~ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~ 196 (366)
+|.+.+++|.++...+-. |.|..+...++.-+.-|..+=..|..++|++.|+.+.++..+|.+.|.+|-.++..||.
T Consensus 44 ~i~~~~~r~~eLk~lI~k---k~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~ 120 (142)
T TIGR03042 44 GIEAAKDRLPELASLVAK---EDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQDG 120 (142)
T ss_pred HHHHHHHhhHHHHHHHhh---cchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 456677777778888776 99999999999988899999999999999999999999999999999999999999998
Q ss_pred cchhhHHHHHHHHhh
Q 017769 197 DAVAPKQKELLNYVG 211 (366)
Q Consensus 197 d~~~~~~~~~L~~v~ 211 (366)
.......+++...+.
T Consensus 121 ~~a~k~Y~~av~~~d 135 (142)
T TIGR03042 121 PQAQKAYQKAAADFD 135 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777655554
No 32
>PLN02956 PSII-Q subunit
Probab=95.61 E-value=0.22 Score=46.47 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=72.4
Q ss_pred hhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchhhH
Q 017769 123 KPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPK 202 (366)
Q Consensus 123 ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~~~ 202 (366)
+.|=.+...+-. |.|--+...++.-+.-|.++=..|..++|++.|+.+.+|..+|-+.|++|..++..||..+....
T Consensus 94 ~~l~~LK~LI~k---~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AAR~kd~~~a~k~ 170 (185)
T PLN02956 94 ENLLRVKALIES---ESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDETRVWEY 170 (185)
T ss_pred HHHHHHHHHhhh---ccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444555544 88999999998888888889999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHhhc
Q 017769 203 QKELLNYVGG 212 (366)
Q Consensus 203 ~~~~L~~v~~ 212 (366)
-++++..+.+
T Consensus 171 Y~~tva~lD~ 180 (185)
T PLN02956 171 YENIVASLDD 180 (185)
T ss_pred HHHHHHHHHH
Confidence 7776665553
No 33
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=95.36 E-value=0.37 Score=44.95 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=78.8
Q ss_pred HHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCcc
Q 017769 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRD 197 (366)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d 197 (366)
||+=-+.|=.+.+.|-. |.|.-+-.++|..+.-|..+=..|+.+.|+++|..-.+|.++|-+.+++|.-++..||..
T Consensus 93 iK~sA~dLl~vK~LId~---~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt~LDyAAR~K~~~ 169 (190)
T PLN02999 93 IKQTAEGLRDMREMLDH---MSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYVRTPKVY 169 (190)
T ss_pred HHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHHHHHHhcCChH
Confidence 34433445556676765 999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhHHHHHHHHhhch
Q 017769 198 AVAPKQKELLNYVGGV 213 (366)
Q Consensus 198 ~~~~~~~~~L~~v~~l 213 (366)
++..--+..+..+.++
T Consensus 170 eae~yY~~Tv~slddV 185 (190)
T PLN02999 170 ESYLYYEKTLKSIDNV 185 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777666654
No 34
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=57.44 E-value=38 Score=27.58 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=45.8
Q ss_pred CChhhhhhHHHHHHHHhcccchhhccccccchHHHH----------HHHHHHHHhHHHHHHHHhhcCccchhhHHHHHHH
Q 017769 139 ALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGM----------ELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLN 208 (366)
Q Consensus 139 ~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~----------~l~~~l~~~l~~l~~~~~~kd~d~~~~~~~~~L~ 208 (366)
....|..-...-...|..+++.+|..|-...+..-. ..++.|...++..+..++..|.-.|......+..
T Consensus 40 ~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~ 119 (127)
T smart00502 40 VEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIE 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345566667777888999999999999877655443 2233334444444444555566667766666655
Q ss_pred Hhh
Q 017769 209 YVG 211 (366)
Q Consensus 209 ~v~ 211 (366)
.+.
T Consensus 120 rl~ 122 (127)
T smart00502 120 RLQ 122 (127)
T ss_pred HHH
Confidence 554
No 35
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=51.90 E-value=45 Score=35.63 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=74.6
Q ss_pred hhhhcccCcCChh--hhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchhhHHHHHH
Q 017769 130 DSLKIAGVKALDP--VERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELL 207 (366)
Q Consensus 130 ~~Lr~~~~K~w~~--~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~~~~~~~L 207 (366)
+-||+|-.|-+.. +..||-+ +++.++. --..+|......-.+++..++.+.+.|.++++.-..|.+....++.+
T Consensus 143 EGl~iPpvKl~~~G~~~~dv~~--~~i~~n~--~~sR~P~~~~gDl~A~iaa~~~g~~rl~el~~~yG~d~v~~~~~~~~ 218 (527)
T PF02538_consen 143 EGLRIPPVKLYERGVLNEDVLD--RIILRNV--FNSRVPDQVLGDLRAQIAACRIGARRLLELIERYGADTVRAAMDEIL 218 (527)
T ss_pred CCCeeeeEEEEECCEeCHHHHH--HHHHhCC--CCCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777664433 4455543 1322221 11457888888888999999999999999999988888888777777
Q ss_pred HHhhchhhhcccCCCC--CCCcccccCCCCC--CceEEEEEecccCCCCccceeEEEEEeCC
Q 017769 208 NYVGGVEEDMVDGFPY--EVPEEYQSMPLLK--GRATVDMKVKVKDNPNVDECVFRIVLDGY 265 (366)
Q Consensus 208 ~~v~~lE~~~v~~~p~--~vP~~y~~~P~L~--GratV~~~t~~~d~~~~~~G~I~IeLdg~ 265 (366)
+...+.=...+..+|= .. .+|...-... ....|.++++++ .++|++.+.+.
T Consensus 219 ~~sE~~~r~~I~~lpd~~g~-~~~~~~~~~~~~~~i~i~v~vtv~------gd~l~~DfsGt 273 (527)
T PF02538_consen 219 DYSERRMRAAIAELPDGYGT-YEFEDYDDGDDGEPIKIKVTVTVK------GDELTVDFSGT 273 (527)
T ss_pred HHHHHHHHHHHHhcCccCCc-eEeeeecCCCCCcEEEEEEEEEEC------CCEEEEEcCCC
Confidence 7665444444433331 11 1121111111 123444444432 57899998874
No 36
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=5.6 Score=42.19 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=43.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee-CCceEecCCC
Q 017769 256 CVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDP 301 (366)
Q Consensus 256 G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFVIQgGDp 301 (366)
..|.|+++..-.|.-++.|.++|+.+|+++.+|.|| .-+++|.||.
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 389999999999999999999999999999999999 8999999986
No 37
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=49.25 E-value=40 Score=31.15 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=15.9
Q ss_pred CHHHHhhhcCCCCCHhHHHHhh
Q 017769 102 DPGALLRYALPIDNKAVREVQK 123 (366)
Q Consensus 102 d~~a~LR~alPi~n~~ir~iQ~ 123 (366)
.++.++||||||-....+++=.
T Consensus 58 TgESivryALPIPssktkell~ 79 (170)
T PF15368_consen 58 TGESIVRYALPIPSSKTKELLS 79 (170)
T ss_pred CchhHHHhhcCCCchhhhhhhh
Confidence 6799999999995554444433
No 38
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.99 E-value=45 Score=28.28 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.3
Q ss_pred hHHHHhhhHhhhhhhhhcccCcCChhhhhhHHHH---HHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHH
Q 017769 117 AVREVQKPLEDITDSLKIAGVKALDPVERNVRQA---SRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIV 191 (366)
Q Consensus 117 ~ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a---~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~ 191 (366)
++.+|++.|+.= .-+.|.....|++.- ....| ..+..+...+.+.+..++..++++.+.|.+|+..+
T Consensus 42 dL~tI~~kl~~~-------~Y~s~~ef~~Dv~li~~Na~~yN-~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (112)
T cd05511 42 DLQTIRKKISKH-------KYQSREEFLEDIELIVDNSVLYN-GPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111 (112)
T ss_pred CHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 466666666652 226677777886533 23444 55666777888888999999999999999988754
No 39
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=38.22 E-value=75 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHHHHHHh--hcCccchhh
Q 017769 174 MELLQKLEAGMDELQQIVE--DRDRDAVAP 201 (366)
Q Consensus 174 ~~l~~~l~~~l~~l~~~~~--~kd~d~~~~ 201 (366)
...|.+|+..|++|++.|. .+++.+|..
T Consensus 45 ~~~l~~ie~~L~DL~~aV~ive~np~kF~l 74 (97)
T PF09177_consen 45 RNALQSIEWDLEDLEEAVRIVEKNPSKFNL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 4567888899999998776 577777654
No 40
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=37.16 E-value=1.7e+02 Score=24.64 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=55.6
Q ss_pred HHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCcc
Q 017769 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRD 197 (366)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d 197 (366)
-..+++.|+.+-..+.. +.|+.-.+...+....-+..+ ..+.-+-.- .-++.+...|.+|...++.+|++
T Consensus 25 ~~~i~~~l~~i~~~i~~---~dW~~A~~~~~~l~~~W~k~~-~~~~~~~~h------~eid~i~~sl~rl~~~i~~~dk~ 94 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIEN---EDWEKAYKETEELEKEWDKNK-KRWSILIEH------QEIDNIDISLARLKGYIEAKDKS 94 (121)
T ss_pred HHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhc-hheeeeecH------HHHHHHHHHHHHHHHHHHCCCHH
Confidence 45677788888888887 778887777776666554333 222222221 34788999999999999999999
Q ss_pred chhhHHHHH
Q 017769 198 AVAPKQKEL 206 (366)
Q Consensus 198 ~~~~~~~~~ 206 (366)
........+
T Consensus 95 ~~l~el~~l 103 (121)
T PF14276_consen 95 ESLAELAEL 103 (121)
T ss_pred HHHHHHHHH
Confidence 877655444
No 41
>PRK11820 hypothetical protein; Provisional
Probab=36.94 E-value=99 Score=30.79 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=52.3
Q ss_pred hhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHh---hcCccchhhHHH
Q 017769 128 ITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVE---DRDRDAVAPKQK 204 (366)
Q Consensus 128 i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~---~kd~d~~~~~~~ 204 (366)
+...|+.||. +..-..+.......+..-=+.-|+.+-..++..|+.|...|..-|+.|+..++ ..-+..+...+.
T Consensus 107 l~~ll~~p~v--~~~~~~~~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~ 184 (288)
T PRK11820 107 LDDLLRWPGV--LEAEEEDLEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRE 184 (288)
T ss_pred HHHHhCCCCc--ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4556677765 22212233323334444445566777788999999999999999998887655 344444555556
Q ss_pred HHHHHhhch
Q 017769 205 ELLNYVGGV 213 (366)
Q Consensus 205 ~~L~~v~~l 213 (366)
+....+.++
T Consensus 185 rL~~rl~el 193 (288)
T PRK11820 185 RLRERLEEL 193 (288)
T ss_pred HHHHHHHHH
Confidence 666666654
No 42
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=29.98 E-value=56 Score=29.69 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=26.2
Q ss_pred ceeEEEEEeCCCChhhHHHHHHhHhccCCCCceeeee---CCceEecCC
Q 017769 255 ECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA---DGFVVQTGD 300 (366)
Q Consensus 255 ~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV---~gFVIQgGD 300 (366)
.-.++.+|..+.||.||+.|.++- =|.+..+|=. +..++.-|+
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~ 52 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPD 52 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCC
Confidence 358999999999999999998876 2334444433 233455555
No 43
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.36 E-value=2.3e+02 Score=30.73 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=42.3
Q ss_pred cCCCCCHhHHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhc---ccchhhccccccchHHHH-HHHHHHHHhHH
Q 017769 110 ALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQ---GKSLIVEGLAESKKEHGM-ELLQKLEAGMD 185 (366)
Q Consensus 110 alPi~n~~ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~---~~~~il~~vp~~~~~~~~-~l~~~l~~~l~ 185 (366)
-||-....+.+||+.+.+|-+.+.. -+...+..++..+++-+.. +-+..++.+-.--...+. .+..+|+..|+
T Consensus 407 vIPt~ps~l~~l~~~~~~il~kin~---lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 407 IIPTVSGGLAQIQQKLMEALDKINN---LPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 3777788888899888887776643 3445554444332222211 111111111111111222 34477778888
Q ss_pred HHHHHHhh
Q 017769 186 ELQQIVED 193 (366)
Q Consensus 186 ~l~~~~~~ 193 (366)
+++..++.
T Consensus 484 ~l~~~l~~ 491 (547)
T PRK10807 484 ELNRSMQG 491 (547)
T ss_pred HHHHHHhh
Confidence 88777775
No 44
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=24.15 E-value=1.1e+02 Score=29.10 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchhhH
Q 017769 150 ASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPK 202 (366)
Q Consensus 150 a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~~~ 202 (366)
..|+..+ ...+..+|-..++....+.++++...|++|.+.++++|.+++...
T Consensus 204 ~tRia~~-~p~l~~~I~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d~~~l~~~ 255 (258)
T PF02153_consen 204 MTRIASS-DPELWADIFLSNPENLLEALDEFIKELNELREALEAGDEEELEEL 255 (258)
T ss_dssp HHGGGGS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hcccccC-ChHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3366654 446788888889999999999999999999999999999877654
No 45
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=23.73 E-value=1.3e+02 Score=27.00 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=50.2
Q ss_pred hHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchh--hHH-HHHHHHhhchhhhcccCCC
Q 017769 146 NVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVA--PKQ-KELLNYVGGVEEDMVDGFP 222 (366)
Q Consensus 146 ~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~--~~~-~~~L~~v~~lE~~~v~~~p 222 (366)
||..++.+|....+.|.+++|-..-....-.+..++..|.+|...+.+.-+.-.+ ..+ ...|..+-. --.++..+|
T Consensus 2 ~i~~~~~~L~~~~~~i~~s~Py~~~~~~dyaY~Rvk~~L~~F~~~L~D~~~~~lPP~~~~~~~sL~fl~~-at~~v~~LP 80 (143)
T PF08559_consen 2 DIQSALEVLQQKQENIYKSFPYSRSVSSDYAYNRVKPHLLEFLKALSDFGLNFLPPNEQQWSTSLEFLDE-ATNIVHKLP 80 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHTS-SSS-TTSHHHHHHHHHHHHHHHHHHHHHGGGGSTTT---HHHHHHHHHH-HHHHHHTS-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH-HHHHHHHCC
Confidence 5778899999999999999997766555778888999999998888876666552 222 334444443 233455555
No 46
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=3e+02 Score=22.33 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHhhcCccchhhHHHHHHHHhhchhhhcccCCCC-CCCccc
Q 017769 169 KKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPY-EVPEEY 229 (366)
Q Consensus 169 ~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~lE~~~v~~~p~-~vP~~y 229 (366)
+.+.-+..|++|...|.+.+..++ +.....+-..+.+.+++....+..+- +-|+-|
T Consensus 16 r~AfQE~tieeLn~~laEq~~~i~-----k~q~qlr~L~~kl~~~~~~~~~~~~~etpPPHY 72 (72)
T COG2900 16 RLAFQEQTIEELNDALAEQQLVID-----KLQAQLRLLTEKLKDLQPSAIASPAEETPPPHY 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcccccCCCcccCCCCCC
Confidence 344556777788877777776654 33344566777788888888876665 334433
No 47
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=23.26 E-value=74 Score=33.08 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=56.2
Q ss_pred hhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHHHhhcCccchhhHHHH
Q 017769 126 EDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKE 205 (366)
Q Consensus 126 E~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~d~~~~~~~~ 205 (366)
.++-+.||..++|=| +++||..|..+|. .-|.+|+.+.... ...+=..|...|..|.. +..-|.+.+..+...
T Consensus 136 aEaeyLlrlA~qkL~--l~~Dv~tA~alLk-sAD~rLa~~~dP~---l~~lR~Aia~DI~~L~a-v~~vD~~Gl~lrL~~ 208 (390)
T PRK10920 136 AQADFLVKLAGRKLW--SDQDVTTAAALLK-SADASLADMNDPS---LITVRRAITDDIATLSA-VSQVDYDGIILKLNQ 208 (390)
T ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHH-HHHHHHHhcCCcc---hHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 335666777776644 6799998888885 7888888875433 33333445555666554 455788888888888
Q ss_pred HHHHhhchhhh
Q 017769 206 LLNYVGGVEED 216 (366)
Q Consensus 206 ~L~~v~~lE~~ 216 (366)
+.+.|.+|-..
T Consensus 209 L~~qVd~LpL~ 219 (390)
T PRK10920 209 LSNQVDNLRLA 219 (390)
T ss_pred HHHHHhhCCCC
Confidence 77777765554
No 48
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.26 E-value=4.5e+02 Score=26.00 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=41.6
Q ss_pred HHHHHHHhHHHHHHHHhhcCccchh--hHHHHHHHHhhchhhhcccCCCCCCCcccccCCCC---CCceEEEEEecccCC
Q 017769 176 LLQKLEAGMDELQQIVEDRDRDAVA--PKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLL---KGRATVDMKVKVKDN 250 (366)
Q Consensus 176 l~~~l~~~l~~l~~~~~~kd~d~~~--~~~~~~L~~v~~lE~~~v~~~p~~vP~~y~~~P~L---~GratV~~~t~~~d~ 250 (366)
-+.+|......|..++.......-+ .....+|...|- .++. +|..--.+ .++..++|.+...
T Consensus 49 ~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~gl-----~~~~------~y~~Q~~~~~~~~~~rpD~vI~LP-- 115 (304)
T PF02646_consen 49 EIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSGL-----PEGC------DYETQVSLDEDGNGLRPDFVIHLP-- 115 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcCC-----Cccc------chhhcccccCCCCCcCceEEEEcC--
Confidence 3577888888888888744443333 233556666651 1211 34333333 4555666666532
Q ss_pred CCccceeEEEEEeCCCChhhH
Q 017769 251 PNVDECVFRIVLDGYNAPVTA 271 (366)
Q Consensus 251 ~~~~~G~I~IeLdg~~AP~Ta 271 (366)
.|. .|.+|. .+|+++
T Consensus 116 ----~~~-~i~IDS-K~pl~~ 130 (304)
T PF02646_consen 116 ----GGR-HIPIDS-KFPLEA 130 (304)
T ss_pred ----CCC-EEEEec-CCCHHH
Confidence 233 677777 566554
No 49
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.72 E-value=3.7e+02 Score=29.01 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHH
Q 017769 118 VREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQI 190 (366)
Q Consensus 118 ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~ 190 (366)
+++=|++||+|+..+ |....+..+|+.-...+...... ..-++++. -+|.++-+..+.|+..
T Consensus 201 Vkeee~k~eKiskR~-----~aleev~n~vk~l~em~l~~s~e--g~a~pd~E----~~lq~v~~~ce~lr~t 262 (594)
T KOG1086|consen 201 VKEEEHKLEKISKRV-----KALEEVNNNVKLLEEMLLDYSQE--GNASPDNE----LLLQEVYNRCEQLRPT 262 (594)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccC--CCCCCcHH----HHHHHHHHHHHHHHHH
Confidence 445588899999965 45788899999888877766655 23333333 3445555555555543
No 50
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=22.58 E-value=1.3e+02 Score=26.88 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=41.0
Q ss_pred CHhHHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhcccccc--chHHHHHHHHHHHHhHHHHHHHHh
Q 017769 115 NKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAES--KKEHGMELLQKLEAGMDELQQIVE 192 (366)
Q Consensus 115 n~~ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~--~~~~~~~l~~~l~~~l~~l~~~~~ 192 (366)
|.-|.++-+.||+|...|..+ ..-..++..+...||..+-.+ .++.|++++..|+.=.++|+.-+.
T Consensus 15 ~~vI~d~~e~leei~~~L~~~------------e~I~emFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~~asqL~~~~~ 82 (127)
T PF14591_consen 15 NSVIPDVEEDLEEIFESLADK------------EEIEEMFRSDLEDILEDYKSGDIDEEEALQLLDELKSYASQLQEHYF 82 (127)
T ss_dssp ------TSS-GGGHHH-HT-H------------HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHcCH------------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999988752 223345667777777766555 577889999999887777776544
No 51
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=21.93 E-value=2.8e+02 Score=25.28 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=41.2
Q ss_pred CCCCCHhHHHHhhhHhhhhhhhhcccCcCChhhhhhHHHHHHHHhcccchhhccccccchHHHHHHHHHHHHhHHHHHHH
Q 017769 111 LPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQI 190 (366)
Q Consensus 111 lPi~n~~ir~iQ~~LE~i~~~Lr~~~~K~w~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~l~~l~~~ 190 (366)
+|++..+|-.+=..|.+|.+.+.. +...+.-.+ -.+|++-++...++++.+....+.+.++
T Consensus 73 tP~dRedi~~L~~~lD~I~d~i~~---------------~a~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 133 (214)
T PF01865_consen 73 TPFDREDILRLISSLDDIADYIED---------------AAKRLSLYK----VEIPEELREEFQELAEIVVEAIEELVEA 133 (214)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHT--------CCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhc----cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888776642 223332222 2457777777778888888888888877
Q ss_pred Hhh
Q 017769 191 VED 193 (366)
Q Consensus 191 ~~~ 193 (366)
+..
T Consensus 134 i~~ 136 (214)
T PF01865_consen 134 IEE 136 (214)
T ss_dssp HCC
T ss_pred HHH
Confidence 774
No 52
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=20.54 E-value=4.6e+02 Score=24.26 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=19.3
Q ss_pred cCCCCCHhHHHHhhhHhhhhhhhh
Q 017769 110 ALPIDNKAVREVQKPLEDITDSLK 133 (366)
Q Consensus 110 alPi~n~~ir~iQ~~LE~i~~~Lr 133 (366)
-+|++..+|-.+=+.|.+|.+.++
T Consensus 75 itP~dReDi~~L~~~lD~I~D~i~ 98 (216)
T TIGR00153 75 FLPNDRRDLLELAELLDEILDSLE 98 (216)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHH
Confidence 469999999999888888776654
Done!