Query 017770
Match_columns 366
No_of_seqs 130 out of 165
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02290 3-dehydroquinate synt 100.0 2E-114 4E-119 842.0 34.4 301 50-361 1-314 (344)
2 PF01959 DHQS: 3-dehydroquinat 100.0 2E-114 5E-119 844.0 33.8 305 51-361 1-324 (354)
3 COG1465 Predicted alternative 100.0 2E-110 4E-115 803.2 32.0 307 49-361 1-346 (376)
4 PF01079 Hint: Hint module; I 95.4 0.048 1E-06 51.5 7.0 62 279-345 14-79 (217)
5 cd00331 IGPS Indole-3-glycerol 92.7 1.3 2.7E-05 40.3 10.3 112 58-190 82-202 (217)
6 cd00452 KDPG_aldolase KDPG and 92.1 0.95 2.1E-05 40.8 8.5 111 59-193 18-128 (190)
7 TIGR02311 HpaI 2,4-dihydroxyhe 91.8 0.72 1.6E-05 43.9 7.8 91 110-204 13-107 (249)
8 smart00306 HintN Hint (Hedgeho 91.0 0.74 1.6E-05 35.8 6.0 52 282-333 7-61 (100)
9 PRK05826 pyruvate kinase; Prov 91.0 0.56 1.2E-05 49.0 6.7 134 58-204 174-334 (465)
10 TIGR03239 GarL 2-dehydro-3-deo 90.9 0.98 2.1E-05 43.2 7.7 90 109-203 12-106 (249)
11 PRK10128 2-keto-3-deoxy-L-rham 90.5 1 2.2E-05 43.9 7.5 92 109-203 18-112 (267)
12 PRK10558 alpha-dehydro-beta-de 89.9 1.3 2.9E-05 42.5 7.8 90 109-203 19-113 (256)
13 PTZ00300 pyruvate kinase; Prov 89.3 1.3 2.7E-05 46.4 7.6 135 57-204 147-307 (454)
14 PRK00278 trpC indole-3-glycero 88.6 5.2 0.00011 38.3 10.7 116 59-195 122-251 (260)
15 cd04729 NanE N-acetylmannosami 88.6 1.7 3.7E-05 39.7 7.1 109 60-191 82-208 (219)
16 TIGR00262 trpA tryptophan synt 88.3 3 6.4E-05 40.0 8.9 116 60-191 105-229 (256)
17 PF00224 PK: Pyruvate kinase, 87.6 0.59 1.3E-05 46.6 3.8 134 58-204 177-336 (348)
18 PRK10558 alpha-dehydro-beta-de 87.5 1.9 4.2E-05 41.4 7.1 100 59-194 80-181 (256)
19 PF03328 HpcH_HpaI: HpcH/HpaI 87.2 3.2 6.8E-05 38.1 8.0 92 111-205 2-108 (221)
20 PRK10128 2-keto-3-deoxy-L-rham 87.1 2 4.3E-05 41.8 7.0 131 59-192 79-240 (267)
21 PF01729 QRPTase_C: Quinolinat 86.6 2 4.4E-05 39.1 6.4 42 160-204 81-122 (169)
22 PRK01130 N-acetylmannosamine-6 86.4 3.6 7.8E-05 37.6 8.0 110 59-191 77-204 (221)
23 CHL00200 trpA tryptophan synth 86.4 2.4 5.2E-05 41.1 7.1 117 59-191 108-233 (263)
24 PLN02591 tryptophan synthase 86.1 3.1 6.6E-05 40.2 7.6 117 59-191 95-220 (250)
25 PTZ00066 pyruvate kinase; Prov 85.6 3 6.5E-05 44.4 7.9 135 58-205 210-371 (513)
26 TIGR01370 cysRS possible cyste 85.6 6.4 0.00014 39.5 9.8 135 39-193 33-171 (315)
27 TIGR03239 GarL 2-dehydro-3-deo 85.3 1.7 3.6E-05 41.7 5.4 136 53-191 65-232 (249)
28 PRK05848 nicotinate-nucleotide 85.1 1.8 3.8E-05 42.4 5.6 52 149-203 169-223 (273)
29 PF02662 FlpD: Methyl-viologen 84.1 1.4 2.9E-05 38.2 3.8 50 169-218 39-101 (124)
30 cd06220 DHOD_e_trans_like2 FAD 82.9 6.3 0.00014 36.0 7.9 50 278-334 49-98 (233)
31 cd04732 HisA HisA. Phosphorib 82.3 14 0.0003 33.6 9.9 131 52-191 75-221 (234)
32 PRK08345 cytochrome-c3 hydroge 82.1 7.4 0.00016 37.2 8.4 99 216-333 6-117 (289)
33 PRK05826 pyruvate kinase; Prov 81.7 11 0.00025 39.5 10.2 37 169-205 173-210 (465)
34 PRK05458 guanosine 5'-monophos 80.5 7.9 0.00017 39.0 8.2 116 56-189 47-168 (326)
35 PLN02762 pyruvate kinase compl 80.1 6.3 0.00014 42.0 7.7 134 58-204 204-365 (509)
36 PRK06106 nicotinate-nucleotide 80.0 3.4 7.3E-05 40.8 5.4 41 160-203 195-235 (281)
37 cd04730 NPD_like 2-Nitropropan 79.8 11 0.00023 34.3 8.2 110 58-191 68-187 (236)
38 PF00970 FAD_binding_6: Oxidor 79.7 4.1 8.8E-05 32.1 4.8 88 217-312 1-97 (99)
39 PRK05713 hypothetical protein; 79.5 15 0.00033 35.4 9.6 44 286-332 156-200 (312)
40 PRK06559 nicotinate-nucleotide 79.4 4 8.6E-05 40.6 5.6 42 159-203 197-238 (290)
41 PLN02623 pyruvate kinase 79.0 5.9 0.00013 42.9 7.2 135 58-205 279-439 (581)
42 TIGR03151 enACPred_II putative 78.7 9.8 0.00021 37.4 8.1 113 57-190 22-137 (307)
43 PF03060 NMO: Nitronate monoox 78.3 2.3 4.9E-05 41.8 3.6 50 134-190 115-164 (330)
44 PF10844 DUF2577: Protein of u 77.7 6.9 0.00015 32.7 5.8 90 207-320 11-100 (100)
45 PRK13922 rod shape-determining 77.5 31 0.00067 32.8 10.9 118 195-321 101-240 (276)
46 TIGR01306 GMP_reduct_2 guanosi 77.2 11 0.00024 37.9 8.2 114 57-189 45-165 (321)
47 PRK08385 nicotinate-nucleotide 77.1 4.7 0.0001 39.7 5.4 55 147-204 168-224 (278)
48 cd00331 IGPS Indole-3-glycerol 77.1 7.7 0.00017 35.3 6.5 112 60-192 34-151 (217)
49 PRK07896 nicotinate-nucleotide 76.9 5.3 0.00012 39.6 5.7 53 148-203 186-240 (289)
50 TIGR01064 pyruv_kin pyruvate k 76.6 6 0.00013 41.4 6.3 135 58-205 172-333 (473)
51 COG1370 Prefoldin, molecular c 76.5 2.1 4.6E-05 39.3 2.7 93 218-328 40-140 (155)
52 PF00072 Response_reg: Respons 76.3 12 0.00027 28.7 6.6 80 116-198 28-109 (112)
53 PRK06543 nicotinate-nucleotide 76.0 5.1 0.00011 39.6 5.3 42 160-204 194-235 (281)
54 PF13653 GDPD_2: Glycerophosph 75.5 4.8 0.0001 27.6 3.5 25 53-77 2-27 (30)
55 PRK06096 molybdenum transport 75.3 5.7 0.00012 39.3 5.4 43 159-204 189-231 (284)
56 PRK01130 N-acetylmannosamine-6 74.9 40 0.00088 30.8 10.6 115 60-189 26-146 (221)
57 PLN02461 Probable pyruvate kin 74.8 8.5 0.00018 41.1 6.9 134 58-204 194-354 (511)
58 PRK08221 anaerobic sulfite red 74.7 18 0.0004 34.1 8.5 59 271-333 49-110 (263)
59 PRK06978 nicotinate-nucleotide 74.5 6.3 0.00014 39.3 5.6 41 160-203 206-246 (294)
60 PRK06739 pyruvate kinase; Vali 74.1 10 0.00022 38.6 7.1 134 58-204 166-326 (352)
61 PRK11840 bifunctional sulfur c 74.1 14 0.00031 37.5 8.0 102 58-198 182-292 (326)
62 PRK00043 thiE thiamine-phospha 73.3 57 0.0012 28.9 10.9 113 61-194 72-198 (212)
63 TIGR00007 phosphoribosylformim 72.9 45 0.00098 30.5 10.3 125 58-191 82-220 (230)
64 TIGR01334 modD putative molybd 72.4 8 0.00017 38.1 5.7 54 148-204 175-230 (277)
65 PRK00054 dihydroorotate dehydr 72.0 4.7 0.0001 37.4 3.8 61 269-334 49-112 (250)
66 PRK00278 trpC indole-3-glycero 71.7 14 0.0003 35.5 7.0 119 53-192 64-190 (260)
67 cd00288 Pyruvate_Kinase Pyruva 71.2 10 0.00022 40.0 6.5 135 58-205 175-335 (480)
68 PRK07428 nicotinate-nucleotide 71.0 9.1 0.0002 37.9 5.7 42 159-203 196-237 (288)
69 TIGR02311 HpaI 2,4-dihydroxyhe 70.8 42 0.0009 32.1 10.0 91 52-181 15-108 (249)
70 PRK10926 ferredoxin-NADP reduc 70.1 43 0.00094 31.2 9.7 45 285-333 69-115 (248)
71 cd05829 Sortase_E Sortase E (S 69.8 6.1 0.00013 34.6 3.9 33 289-321 65-97 (144)
72 cd00081 Hint Hedgehog/Intein d 69.7 20 0.00044 29.3 6.7 52 283-334 7-62 (136)
73 PRK09140 2-dehydro-3-deoxy-6-p 69.2 44 0.00096 31.2 9.5 122 59-203 24-148 (206)
74 PTZ00314 inosine-5'-monophosph 69.1 14 0.0003 38.9 6.9 119 58-191 241-375 (495)
75 PF13403 Hint_2: Hint domain 68.8 13 0.00029 32.9 5.7 51 282-334 7-65 (147)
76 cd06217 FNR_iron_sulfur_bindin 68.4 35 0.00076 30.6 8.5 58 270-332 50-115 (235)
77 PRK13289 bifunctional nitric o 68.2 23 0.0005 34.9 7.9 105 213-332 152-269 (399)
78 cd00564 TMP_TenI Thiamine mono 67.8 20 0.00042 30.9 6.5 108 60-189 15-122 (196)
79 PF11247 DUF2675: Protein of u 67.6 3.2 6.9E-05 35.7 1.6 52 168-223 43-97 (98)
80 TIGR01163 rpe ribulose-phospha 67.6 16 0.00034 32.4 6.0 22 58-79 67-88 (210)
81 cd00381 IMPDH IMPDH: The catal 66.9 15 0.00032 36.5 6.3 118 56-191 92-228 (325)
82 PLN02765 pyruvate kinase 66.8 5.5 0.00012 42.7 3.4 135 58-205 207-368 (526)
83 KOG0538 Glycolate oxidase [Ene 66.6 3.1 6.7E-05 42.5 1.5 111 59-191 136-253 (363)
84 cd06196 FNR_like_1 Ferredoxin 66.3 9.1 0.0002 34.2 4.3 53 270-331 47-106 (218)
85 TIGR03224 benzo_boxA benzoyl-C 66.2 31 0.00067 35.2 8.5 166 141-331 74-274 (411)
86 PRK09016 quinolinate phosphori 66.1 13 0.00028 37.2 5.7 41 160-203 209-249 (296)
87 TIGR03151 enACPred_II putative 65.6 26 0.00056 34.5 7.6 109 59-191 76-192 (307)
88 PF02254 TrkA_N: TrkA-N domain 64.7 48 0.001 26.5 7.8 101 60-188 11-115 (116)
89 TIGR02911 sulfite_red_B sulfit 64.5 10 0.00022 35.8 4.5 60 270-333 46-108 (261)
90 PRK06222 ferredoxin-NADP(+) re 63.5 7.1 0.00015 37.2 3.2 56 270-331 44-105 (281)
91 PLN02716 nicotinate-nucleotide 63.4 16 0.00034 36.8 5.7 41 160-203 204-259 (308)
92 TIGR01302 IMP_dehydrog inosine 63.4 28 0.0006 36.0 7.7 119 58-191 224-358 (450)
93 COG2197 CitB Response regulato 62.9 57 0.0012 30.1 8.9 70 130-199 44-113 (211)
94 PRK13802 bifunctional indole-3 62.3 66 0.0014 35.8 10.7 117 59-200 122-257 (695)
95 cd06192 DHOD_e_trans_like FAD/ 62.3 8 0.00017 35.4 3.3 59 269-332 42-105 (243)
96 TIGR01949 AroFGH_arch predicte 61.8 33 0.00071 32.5 7.3 131 62-204 95-248 (258)
97 TIGR03128 RuMP_HxlA 3-hexulose 61.7 1.2E+02 0.0026 27.1 10.7 18 62-79 68-85 (206)
98 PRK13125 trpA tryptophan synth 61.3 31 0.00068 32.5 7.1 115 58-191 89-216 (244)
99 PRK10840 transcriptional regul 60.7 69 0.0015 28.3 8.8 81 117-199 35-119 (216)
100 PLN02334 ribulose-phosphate 3- 60.5 39 0.00084 31.3 7.4 125 60-203 78-222 (229)
101 PF00290 Trp_syntA: Tryptophan 60.4 19 0.00042 35.1 5.6 114 59-191 104-228 (259)
102 cd08570 GDPD_YPL206cp_fungi Gl 60.2 12 0.00025 34.5 4.0 30 48-77 202-232 (234)
103 cd00322 FNR_like Ferredoxin re 60.1 12 0.00026 32.9 3.8 51 278-333 54-106 (223)
104 cd04724 Tryptophan_synthase_al 59.8 44 0.00096 31.6 7.8 113 60-191 94-217 (242)
105 PF02581 TMP-TENI: Thiamine mo 59.8 48 0.001 29.5 7.6 108 59-191 14-124 (180)
106 PRK11872 antC anthranilate dio 59.5 11 0.00024 36.9 3.9 49 278-332 166-217 (340)
107 cd06211 phenol_2-monooxygenase 59.3 1.1E+02 0.0024 27.9 10.0 98 217-333 8-118 (238)
108 cd04728 ThiG Thiazole synthase 59.0 31 0.00068 34.0 6.8 29 165-196 183-216 (248)
109 PRK00208 thiG thiazole synthas 58.9 33 0.00071 33.9 6.9 31 164-197 182-217 (250)
110 cd04729 NanE N-acetylmannosami 58.8 1.4E+02 0.003 27.4 10.6 116 60-189 30-150 (219)
111 PF03328 HpcH_HpaI: HpcH/HpaI 58.8 61 0.0013 29.7 8.4 27 54-80 5-31 (221)
112 PRK00748 1-(5-phosphoribosyl)- 58.7 40 0.00087 30.7 7.1 22 58-79 84-105 (233)
113 cd04722 TIM_phosphate_binding 58.4 58 0.0013 27.3 7.5 17 64-80 78-94 (200)
114 cd06201 SiR_like2 Cytochrome p 58.3 87 0.0019 30.1 9.6 108 212-331 42-162 (289)
115 PRK09140 2-dehydro-3-deoxy-6-p 58.1 17 0.00037 33.9 4.7 88 112-200 13-101 (206)
116 PRK10669 putative cation:proto 58.1 50 0.0011 34.6 8.6 104 60-191 430-537 (558)
117 TIGR00432 arcsn_tRNA_tgt tRNA- 57.8 8.2 0.00018 41.4 2.8 32 295-328 495-526 (540)
118 cd00405 PRAI Phosphoribosylant 57.6 1.4E+02 0.0031 26.9 10.4 114 59-193 8-131 (203)
119 PF01472 PUA: PUA domain; Int 57.0 17 0.00037 28.3 3.9 39 284-324 18-56 (74)
120 cd04743 NPD_PKS 2-Nitropropane 57.0 32 0.00068 34.8 6.6 114 132-263 82-212 (320)
121 TIGR01445 intein_Nterm intein 56.8 30 0.00065 26.4 5.1 58 282-344 5-72 (81)
122 PRK09206 pyruvate kinase; Prov 56.6 35 0.00076 36.2 7.1 134 58-204 173-333 (470)
123 PRK04302 triosephosphate isome 56.4 90 0.0019 28.9 9.1 110 63-190 78-203 (223)
124 PRK15452 putative protease; Pr 56.2 1.2E+02 0.0026 31.9 10.8 136 52-201 5-154 (443)
125 cd06213 oxygenase_e_transfer_s 56.1 1.3E+02 0.0029 27.0 10.0 40 288-333 69-109 (227)
126 cd06207 CyPoR_like NADPH cytoc 56.0 12 0.00027 37.2 3.6 63 265-332 159-238 (382)
127 PTZ00319 NADH-cytochrome B5 re 55.8 1.1E+02 0.0024 29.7 9.9 94 211-312 29-144 (300)
128 TIGR03784 marine_sortase sorta 55.4 16 0.00034 33.6 3.9 33 290-322 102-134 (174)
129 TIGR01588 citE citrate lyase, 55.3 87 0.0019 30.5 9.1 85 118-204 12-108 (288)
130 cd06198 FNR_like_3 NAD(P) bind 55.2 14 0.00031 32.9 3.6 59 269-333 40-104 (216)
131 cd04723 HisA_HisF Phosphoribos 55.2 1.3E+02 0.0028 28.2 10.0 125 52-190 80-219 (233)
132 PRK05742 nicotinate-nucleotide 54.8 30 0.00066 34.1 6.0 42 159-203 189-230 (277)
133 TIGR00078 nadC nicotinate-nucl 54.8 35 0.00076 33.2 6.4 42 159-203 178-219 (265)
134 PRK06354 pyruvate kinase; Prov 54.6 38 0.00082 36.9 7.1 135 58-205 179-340 (590)
135 PF05203 Hom_end_hint: Hom_end 53.7 14 0.0003 35.1 3.4 31 283-315 7-37 (215)
136 cd04726 KGPDC_HPS 3-Keto-L-gul 53.5 69 0.0015 28.3 7.6 76 109-190 54-134 (202)
137 cd04726 KGPDC_HPS 3-Keto-L-gul 53.3 1.1E+02 0.0024 27.1 8.8 114 60-190 67-187 (202)
138 cd08562 GDPD_EcUgpQ_like Glyce 52.9 18 0.0004 32.6 3.9 30 48-77 197-227 (229)
139 PRK07609 CDP-6-deoxy-delta-3,4 52.9 81 0.0018 30.5 8.5 97 215-331 102-211 (339)
140 PRK07455 keto-hydroxyglutarate 52.7 96 0.0021 28.4 8.5 118 59-203 26-150 (187)
141 cd02809 alpha_hydroxyacid_oxid 52.5 67 0.0014 31.2 7.9 72 117-191 180-258 (299)
142 cd08561 GDPD_cytoplasmic_ScUgp 52.5 22 0.00047 33.0 4.4 31 48-78 210-241 (249)
143 cd08575 GDPD_GDE4_like Glycero 52.4 17 0.00037 34.4 3.8 32 48-79 229-261 (264)
144 PRK02083 imidazole glycerol ph 52.1 1.1E+02 0.0023 28.7 9.0 111 58-190 31-174 (253)
145 cd08565 GDPD_pAtGDE_like Glyce 52.1 18 0.0004 33.7 3.9 30 50-79 201-231 (235)
146 cd08564 GDPD_GsGDE_like Glycer 51.7 20 0.00043 33.8 4.1 31 48-78 221-256 (265)
147 cd06212 monooxygenase_like The 51.6 1.3E+02 0.0027 27.2 9.1 96 217-331 2-110 (232)
148 PRK08649 inosine 5-monophospha 51.5 33 0.00071 35.0 5.8 51 131-189 153-215 (368)
149 cd06221 sulfite_reductase_like 51.2 24 0.00052 32.9 4.5 52 278-333 56-107 (253)
150 PRK13111 trpA tryptophan synth 51.1 68 0.0015 31.1 7.6 114 59-191 106-230 (258)
151 TIGR01182 eda Entner-Doudoroff 51.1 90 0.002 29.5 8.3 121 59-203 22-146 (204)
152 cd06189 flavin_oxioreductase N 50.9 1.1E+02 0.0024 27.5 8.6 57 270-331 41-105 (224)
153 cd01572 QPRTase Quinolinate ph 50.7 44 0.00094 32.5 6.3 42 159-203 182-223 (268)
154 PLN02274 inosine-5'-monophosph 50.5 49 0.0011 35.1 7.1 123 54-191 244-382 (505)
155 cd06208 CYPOR_like_FNR These f 50.1 17 0.00037 34.6 3.4 41 288-332 103-143 (286)
156 cd06209 BenDO_FAD_NAD Benzoate 49.8 25 0.00054 31.7 4.2 50 278-333 59-111 (228)
157 PRK10684 HCP oxidoreductase, N 49.6 19 0.00041 35.0 3.6 59 270-333 54-120 (332)
158 PRK09454 ugpQ cytoplasmic glyc 49.6 21 0.00046 33.4 3.8 32 48-79 207-239 (249)
159 PRK09958 DNA-binding transcrip 49.0 1.3E+02 0.0028 25.4 8.3 69 132-202 45-115 (204)
160 cd06218 DHOD_e_trans FAD/NAD b 49.0 25 0.00055 32.7 4.2 59 270-333 44-107 (246)
161 cd08583 PI-PLCc_GDPD_SF_unchar 48.7 22 0.00049 32.7 3.9 31 48-78 203-234 (237)
162 PRK13585 1-(5-phosphoribosyl)- 48.7 83 0.0018 28.9 7.6 99 92-194 5-110 (241)
163 PRK14114 1-(5-phosphoribosyl)- 48.6 1.1E+02 0.0024 29.2 8.6 125 58-190 83-224 (241)
164 PRK06567 putative bifunctional 48.5 68 0.0015 37.4 8.2 91 215-314 790-889 (1028)
165 PRK08114 cystathionine beta-ly 48.2 13 0.00027 38.1 2.3 123 60-187 67-205 (395)
166 cd06184 flavohem_like_fad_nad_ 48.1 22 0.00048 32.4 3.7 60 269-333 56-122 (247)
167 PF14382 ECR1_N: Exosome compl 48.1 13 0.00028 26.7 1.7 38 284-323 1-38 (39)
168 PRK08051 fre FMN reductase; Va 47.9 1.5E+02 0.0033 27.1 9.1 95 217-331 4-109 (232)
169 cd08582 GDPD_like_2 Glyceropho 47.8 25 0.00054 32.2 4.0 31 48-78 199-230 (233)
170 cd08563 GDPD_TtGDE_like Glycer 47.6 24 0.00052 32.3 3.8 31 48-78 198-229 (230)
171 PRK05802 hypothetical protein; 47.2 14 0.0003 36.5 2.4 86 215-312 64-160 (320)
172 PF14623 Vint: Hint-domain 47.2 32 0.00069 32.0 4.5 48 281-330 6-56 (162)
173 cd08581 GDPD_like_1 Glyceropho 47.0 26 0.00057 32.5 4.0 30 48-77 197-227 (229)
174 PRK03659 glutathione-regulated 47.0 1.1E+02 0.0025 32.7 9.2 102 60-189 413-518 (601)
175 PF00218 IGPS: Indole-3-glycer 46.9 1.6E+02 0.0034 28.9 9.4 111 59-190 120-239 (254)
176 PRK06552 keto-hydroxyglutarate 46.7 1.8E+02 0.0039 27.5 9.5 124 59-203 27-153 (213)
177 cd06216 FNR_iron_sulfur_bindin 46.6 1.3E+02 0.0029 27.4 8.4 101 214-332 16-130 (243)
178 PRK13958 N-(5'-phosphoribosyl) 46.5 2.5E+02 0.0054 26.2 10.7 114 58-191 9-131 (207)
179 PRK00043 thiE thiamine-phospha 46.4 54 0.0012 29.1 5.8 105 60-189 24-131 (212)
180 PRK13587 1-(5-phosphoribosyl)- 46.4 1.2E+02 0.0026 28.7 8.4 122 58-190 86-222 (234)
181 cd08601 GDPD_SaGlpQ_like Glyce 46.4 32 0.0007 32.0 4.5 32 48-79 216-248 (256)
182 COG4697 Uncharacterized protei 46.3 31 0.00067 35.0 4.5 71 219-289 177-279 (319)
183 cd00429 RPE Ribulose-5-phospha 45.9 57 0.0012 28.8 5.8 113 60-188 70-193 (211)
184 PRK13957 indole-3-glycerol-pho 45.5 26 0.00055 34.2 3.8 164 59-251 63-232 (247)
185 cd04732 HisA HisA. Phosphorib 45.5 1.3E+02 0.0028 27.3 8.2 106 93-203 3-116 (234)
186 COG1465 Predicted alternative 45.4 18 0.00039 37.1 2.8 40 163-202 8-48 (376)
187 cd08609 GDPD_GDE3 Glycerophosp 45.3 28 0.00061 34.6 4.1 38 48-87 243-281 (315)
188 cd08610 GDPD_GDE6 Glycerophosp 45.2 30 0.00064 34.5 4.3 38 48-87 243-281 (316)
189 PRK01033 imidazole glycerol ph 45.2 1.7E+02 0.0038 27.8 9.3 119 59-190 85-227 (258)
190 PRK06843 inosine 5-monophospha 45.2 42 0.00091 34.9 5.5 68 119-189 151-222 (404)
191 TIGR01305 GMP_reduct_1 guanosi 44.9 24 0.00053 36.1 3.7 68 119-189 105-178 (343)
192 PRK10643 DNA-binding transcrip 44.6 1.1E+02 0.0023 26.0 7.1 67 132-200 44-112 (222)
193 PF04131 NanE: Putative N-acet 44.6 87 0.0019 29.9 7.0 113 61-187 3-117 (192)
194 cd01568 QPRTase_NadC Quinolina 44.5 62 0.0013 31.4 6.2 42 159-203 181-222 (269)
195 cd06187 O2ase_reductase_like T 44.3 32 0.00068 30.7 4.0 48 278-331 54-105 (224)
196 PRK13585 1-(5-phosphoribosyl)- 44.2 85 0.0019 28.9 6.9 125 58-191 86-224 (241)
197 cd08612 GDPD_GDE4 Glycerophosp 44.2 33 0.00071 33.2 4.3 32 48-79 259-291 (300)
198 PRK08187 pyruvate kinase; Vali 44.1 91 0.002 33.4 7.9 137 57-205 312-475 (493)
199 PHA00440 host protein H-NS-int 43.8 14 0.0003 31.9 1.5 55 168-223 43-97 (98)
200 PRK05718 keto-hydroxyglutarate 43.6 1.4E+02 0.003 28.3 8.3 121 59-203 29-153 (212)
201 COG1385 Uncharacterized protei 43.5 17 0.00038 35.0 2.3 86 271-358 5-107 (246)
202 PRK15447 putative protease; Pr 43.3 1.5E+02 0.0033 29.0 8.8 131 56-202 12-152 (301)
203 COG0135 TrpF Phosphoribosylant 43.0 1.7E+02 0.0037 27.9 8.8 121 58-184 10-181 (208)
204 cd06195 FNR1 Ferredoxin-NADP+ 42.9 30 0.00064 31.6 3.6 51 278-333 56-110 (241)
205 cd08564 GDPD_GsGDE_like Glycer 42.7 45 0.00098 31.4 5.0 45 148-197 212-261 (265)
206 cd01573 modD_like ModD; Quinol 42.7 62 0.0013 31.6 6.0 41 160-203 184-224 (272)
207 cd04731 HisF The cyclase subun 42.6 2.6E+02 0.0056 25.9 9.8 112 59-192 29-172 (243)
208 cd06215 FNR_iron_sulfur_bindin 42.6 30 0.00065 31.0 3.6 50 278-332 59-111 (231)
209 PF03060 NMO: Nitronate monoox 42.3 1.1E+02 0.0024 30.2 7.8 107 61-191 104-221 (330)
210 TIGR01859 fruc_bis_ald_ fructo 42.2 62 0.0013 31.7 5.9 150 53-203 77-245 (282)
211 PRK10336 DNA-binding transcrip 42.1 1.2E+02 0.0027 25.7 7.1 68 131-200 43-112 (219)
212 cd02812 PcrB_like PcrB_like pr 42.0 1.4E+02 0.0029 28.7 8.0 128 53-191 57-206 (219)
213 PLN02623 pyruvate kinase 42.0 36 0.00077 37.2 4.6 62 131-194 290-353 (581)
214 PRK02083 imidazole glycerol ph 42.0 1.7E+02 0.0037 27.4 8.6 104 93-203 7-120 (253)
215 PLN02274 inosine-5'-monophosph 41.9 42 0.0009 35.6 5.0 68 119-189 246-317 (505)
216 PRK05567 inosine 5'-monophosph 41.9 1.4E+02 0.003 31.3 8.7 148 58-232 228-391 (486)
217 TIGR01768 GGGP-family geranylg 41.7 59 0.0013 31.3 5.6 71 118-191 132-210 (223)
218 TIGR00735 hisF imidazoleglycer 41.5 2.2E+02 0.0048 26.9 9.4 128 58-188 84-228 (254)
219 TIGR03128 RuMP_HxlA 3-hexulose 41.5 1.8E+02 0.004 26.0 8.4 90 111-203 55-156 (206)
220 cd08579 GDPD_memb_like Glycero 41.3 32 0.00069 31.2 3.6 30 48-77 188-218 (220)
221 cd06210 MMO_FAD_NAD_binding Me 41.1 1.5E+02 0.0032 26.8 7.8 58 269-331 50-115 (236)
222 PRK09427 bifunctional indole-3 40.6 1.1E+02 0.0023 32.3 7.7 80 115-201 217-303 (454)
223 PRK14560 putative RNA-binding 40.6 47 0.001 29.6 4.5 53 273-327 79-136 (160)
224 COG1585 Membrane protein impli 40.4 51 0.0011 29.4 4.7 32 281-312 101-134 (140)
225 PRK06806 fructose-bisphosphate 40.4 44 0.00096 32.8 4.6 137 53-192 77-233 (281)
226 TIGR00007 phosphoribosylformim 40.4 2E+02 0.0042 26.3 8.6 100 96-199 5-114 (230)
227 PRK09483 response regulator; P 40.1 1.9E+02 0.0042 24.6 8.0 80 117-199 33-114 (217)
228 cd06183 cyt_b5_reduct_like Cyt 40.0 1.8E+02 0.0038 26.0 8.1 49 278-331 60-111 (234)
229 PRK08883 ribulose-phosphate 3- 40.0 74 0.0016 30.0 5.9 127 60-203 71-215 (220)
230 cd06188 NADH_quinone_reductase 39.8 40 0.00087 31.8 4.1 41 287-333 118-159 (283)
231 PRK13856 two-component respons 39.3 2.2E+02 0.0047 25.3 8.5 67 132-199 45-112 (241)
232 TIGR01941 nqrF NADH:ubiquinone 39.3 39 0.00084 34.0 4.2 41 286-332 237-278 (405)
233 TIGR02276 beta_rpt_yvtn 40-res 39.2 60 0.0013 21.4 3.8 37 287-327 1-37 (42)
234 COG2022 ThiG Uncharacterized e 39.1 27 0.00059 34.6 2.9 39 148-190 174-212 (262)
235 TIGR00693 thiE thiamine-phosph 39.0 1.5E+02 0.0033 26.2 7.4 104 60-188 16-122 (196)
236 cd07896 Adenylation_kDNA_ligas 38.9 72 0.0016 28.1 5.3 29 165-193 130-159 (174)
237 PRK14024 phosphoribosyl isomer 38.8 1.2E+02 0.0026 28.5 7.1 128 53-191 76-224 (241)
238 PRK00748 1-(5-phosphoribosyl)- 38.8 1.5E+02 0.0033 26.9 7.6 39 162-203 79-117 (233)
239 PRK13794 hypothetical protein; 38.7 40 0.00088 35.4 4.3 52 273-326 127-183 (479)
240 TIGR01919 hisA-trpF 1-(5-phosp 38.5 1.5E+02 0.0032 28.3 7.7 129 58-190 84-226 (243)
241 cd08574 GDPD_GDE_2_3_6 Glycero 38.3 36 0.00078 32.1 3.6 30 48-77 221-251 (252)
242 COG0648 Nfo Endonuclease IV [D 38.3 15 0.00032 36.5 1.0 18 231-248 171-188 (280)
243 PRK10430 DNA-binding transcrip 38.2 1.6E+02 0.0035 26.6 7.6 66 132-199 49-116 (239)
244 cd00945 Aldolase_Class_I Class 38.0 1.3E+02 0.0028 25.8 6.7 113 60-188 68-200 (201)
245 cd06200 SiR_like1 Cytochrome p 38.0 46 0.001 31.0 4.2 37 290-332 79-117 (245)
246 PRK13957 indole-3-glycerol-pho 38.0 3.2E+02 0.007 26.8 10.0 111 59-195 113-241 (247)
247 PRK11517 transcriptional regul 37.8 1.4E+02 0.003 25.6 6.8 67 131-199 43-110 (223)
248 COG0469 PykF Pyruvate kinase [ 37.7 1.3E+02 0.0028 32.3 7.8 136 57-205 175-337 (477)
249 CHL00148 orf27 Ycf27; Reviewed 37.5 1.1E+02 0.0024 26.5 6.2 40 159-199 77-116 (240)
250 COG0684 MenG Demethylmenaquino 37.4 25 0.00053 33.7 2.3 27 293-320 64-90 (210)
251 PF00107 ADH_zinc_N: Zinc-bind 37.3 2.2E+02 0.0047 22.9 9.2 110 51-180 15-129 (130)
252 PF00977 His_biosynth: Histidi 37.2 1.5E+02 0.0032 27.8 7.4 128 52-190 75-221 (229)
253 PRK10046 dpiA two-component re 37.1 1.6E+02 0.0035 26.4 7.4 66 132-199 50-117 (225)
254 COG0543 UbiB 2-polyprenylpheno 37.1 34 0.00075 32.4 3.2 103 217-333 9-116 (252)
255 PRK02290 3-dehydroquinate synt 36.9 23 0.00049 36.4 2.1 34 169-202 13-46 (344)
256 KOG2797 Prephenate dehydratase 36.8 22 0.00047 36.6 1.9 59 248-326 258-316 (377)
257 PRK05581 ribulose-phosphate 3- 36.7 82 0.0018 28.3 5.5 29 51-79 64-93 (220)
258 PRK06247 pyruvate kinase; Prov 36.4 1.1E+02 0.0023 32.8 6.9 132 58-205 174-331 (476)
259 PRK05464 Na(+)-translocating N 36.1 45 0.00098 33.6 4.1 39 288-332 244-282 (409)
260 COG0084 TatD Mg-dependent DNas 36.1 16 0.00036 35.5 0.9 23 58-80 18-40 (256)
261 cd04730 NPD_like 2-Nitropropan 36.1 1.4E+02 0.003 27.1 6.8 51 132-190 80-130 (236)
262 TIGR01744 XPRTase xanthine pho 36.0 34 0.00075 31.6 3.0 32 280-312 96-132 (191)
263 cd08612 GDPD_GDE4 Glycerophosp 35.9 74 0.0016 30.8 5.3 45 149-198 251-296 (300)
264 cd00381 IMPDH IMPDH: The catal 35.9 1.4E+02 0.0031 29.7 7.4 113 56-188 44-162 (325)
265 PRK07315 fructose-bisphosphate 35.9 93 0.002 30.8 6.1 136 53-192 80-235 (293)
266 PRK04000 translation initiatio 35.7 3.4E+02 0.0074 27.7 10.2 105 217-321 271-411 (411)
267 KOG3997 Major apurinic/apyrimi 35.7 12 0.00026 36.9 -0.0 14 231-244 175-188 (281)
268 cd08556 GDPD Glycerophosphodie 35.6 47 0.001 28.4 3.6 30 48-77 158-188 (189)
269 COG0157 NadC Nicotinate-nucleo 35.4 84 0.0018 31.6 5.7 41 160-203 189-229 (280)
270 cd06206 bifunctional_CYPOR The 35.3 41 0.00089 33.6 3.6 41 287-332 196-238 (384)
271 PRK07226 fructose-bisphosphate 35.3 96 0.0021 29.6 5.9 71 131-205 172-253 (267)
272 cd06214 PA_degradation_oxidore 35.3 3.4E+02 0.0073 24.5 9.5 102 217-334 3-118 (241)
273 cd08580 GDPD_Rv2277c_like Glyc 34.9 53 0.0011 31.8 4.2 32 48-79 227-260 (263)
274 cd01571 NAPRTase_B Nicotinate 34.9 76 0.0016 31.4 5.3 45 160-204 185-239 (302)
275 PRK13534 7-cyano-7-deazaguanin 34.7 30 0.00064 37.9 2.7 44 282-328 580-623 (639)
276 PRK01222 N-(5'-phosphoribosyl) 34.6 3.9E+02 0.0084 25.0 11.6 139 58-205 11-207 (210)
277 PRK08072 nicotinate-nucleotide 34.5 1.1E+02 0.0024 30.2 6.3 41 160-203 189-229 (277)
278 PRK13795 hypothetical protein; 34.4 44 0.00095 36.3 3.9 53 273-327 129-185 (636)
279 cd00452 KDPG_aldolase KDPG and 34.3 1.1E+02 0.0024 27.6 5.8 80 113-198 8-92 (190)
280 cd00958 DhnA Class I fructose- 34.2 1E+02 0.0023 28.2 5.8 73 118-195 140-225 (235)
281 cd08555 PI-PLCc_GDPD_SF Cataly 34.1 50 0.0011 29.3 3.6 28 49-76 148-177 (179)
282 TIGR02160 PA_CoA_Oxy5 phenylac 34.0 40 0.00086 32.8 3.2 45 286-333 72-118 (352)
283 PRK06512 thiamine-phosphate py 33.9 4.1E+02 0.0089 25.1 10.3 83 118-205 119-214 (221)
284 PF01959 DHQS: 3-dehydroquinat 33.8 26 0.00056 36.1 1.9 31 172-202 15-45 (354)
285 COG1908 FrhD Coenzyme F420-red 33.7 32 0.0007 31.1 2.3 21 170-190 41-61 (132)
286 PRK11083 DNA-binding response 33.6 1.4E+02 0.0031 25.4 6.2 66 132-199 47-114 (228)
287 TIGR01387 cztR_silR_copR heavy 33.5 1.7E+02 0.0037 24.7 6.6 67 131-199 41-109 (218)
288 PRK06201 hypothetical protein; 33.4 27 0.00059 33.0 1.9 43 277-320 54-99 (221)
289 PRK10360 DNA-binding transcrip 32.9 2.9E+02 0.0064 23.1 9.0 65 132-199 47-111 (196)
290 cd06191 FNR_iron_sulfur_bindin 32.4 40 0.00086 30.4 2.7 49 278-332 58-110 (231)
291 PRK12778 putative bifunctional 32.4 65 0.0014 35.2 4.8 56 270-331 44-105 (752)
292 cd08567 GDPD_SpGDE_like Glycer 32.4 56 0.0012 30.1 3.8 31 48-78 229-260 (263)
293 cd08610 GDPD_GDE6 Glycerophosp 32.1 74 0.0016 31.7 4.8 54 142-201 229-283 (316)
294 PF14801 GCD14_N: tRNA methylt 32.1 48 0.0011 25.9 2.7 20 297-316 6-25 (54)
295 PRK07455 keto-hydroxyglutarate 32.0 1.1E+02 0.0024 28.0 5.5 77 114-196 17-98 (187)
296 cd06219 DHOD_e_trans_like1 FAD 31.9 56 0.0012 30.3 3.7 58 270-333 43-106 (248)
297 PRK11143 glpQ glycerophosphodi 31.8 64 0.0014 32.6 4.3 51 146-198 290-349 (355)
298 PRK13586 1-(5-phosphoribosyl)- 31.8 4.2E+02 0.0092 25.2 9.6 125 58-188 83-217 (232)
299 cd00508 MopB_CT_Fdh-Nap-like T 31.7 59 0.0013 26.2 3.4 53 296-352 48-103 (120)
300 PRK11475 DNA-binding transcrip 31.6 1.1E+02 0.0023 28.4 5.4 82 116-199 22-108 (207)
301 cd08608 GDPD_GDE2 Glycerophosp 31.5 69 0.0015 32.5 4.5 32 48-79 221-253 (351)
302 PRK08649 inosine 5-monophospha 31.2 1.6E+02 0.0034 30.2 7.0 122 53-191 134-287 (368)
303 cd02810 DHOD_DHPD_FMN Dihydroo 31.1 4E+02 0.0087 25.2 9.3 135 56-190 19-197 (289)
304 cd03174 DRE_TIM_metallolyase D 30.9 1.1E+02 0.0023 28.2 5.3 93 148-244 53-176 (265)
305 PTZ00314 inosine-5'-monophosph 30.8 1.1E+02 0.0025 32.3 6.1 66 119-188 239-309 (495)
306 PRK08999 hypothetical protein; 30.7 4.2E+02 0.0091 25.4 9.5 123 61-189 148-308 (312)
307 PF04203 Sortase: Sortase fami 30.5 65 0.0014 26.7 3.5 35 287-321 51-85 (128)
308 PTZ00327 eukaryotic translatio 30.3 2.6E+02 0.0056 29.5 8.5 57 265-321 385-450 (460)
309 PRK10529 DNA-binding transcrip 30.0 3E+02 0.0066 23.6 7.7 67 132-200 45-112 (225)
310 COG0503 Apt Adenine/guanine ph 29.8 31 0.00067 31.5 1.6 67 246-312 56-131 (179)
311 PRK14114 1-(5-phosphoribosyl)- 29.5 4.2E+02 0.0091 25.4 9.2 103 93-201 4-117 (241)
312 PRK09836 DNA-binding transcrip 29.2 1.9E+02 0.0041 25.0 6.3 67 132-200 44-112 (227)
313 cd08561 GDPD_cytoplasmic_ScUgp 29.2 1E+02 0.0023 28.5 5.0 50 142-197 196-246 (249)
314 PRK09206 pyruvate kinase; Prov 29.2 85 0.0018 33.4 4.9 168 131-311 184-404 (470)
315 PRK06843 inosine 5-monophospha 28.9 2.5E+02 0.0055 29.4 8.1 120 53-191 148-287 (404)
316 COG0159 TrpA Tryptophan syntha 28.9 1.9E+02 0.0041 28.8 6.9 115 60-191 112-235 (265)
317 cd08579 GDPD_memb_like Glycero 28.9 4.4E+02 0.0095 23.9 9.0 125 60-203 16-147 (220)
318 TIGR01588 citE citrate lyase, 28.6 5.6E+02 0.012 25.0 10.7 124 54-194 6-157 (288)
319 TIGR00046 RNA methyltransferas 28.2 56 0.0012 30.8 3.1 71 284-358 16-105 (240)
320 PRK15479 transcriptional regul 27.8 2E+02 0.0043 24.3 6.1 40 160-200 73-112 (221)
321 PRK10766 DNA-binding transcrip 27.8 3.3E+02 0.0072 23.3 7.5 39 160-199 74-112 (221)
322 PLN03115 ferredoxin--NADP(+) r 27.6 39 0.00084 34.4 2.0 40 288-331 183-222 (367)
323 COG1064 AdhP Zn-dependent alco 27.5 5.2E+02 0.011 26.6 9.9 123 51-198 191-319 (339)
324 cd03174 DRE_TIM_metallolyase D 27.4 4.9E+02 0.011 23.9 9.6 38 167-204 143-185 (265)
325 PF14031 D-ser_dehydrat: Putat 27.3 3.5E+02 0.0077 22.3 7.4 24 279-306 53-76 (94)
326 COG3836 HpcH 2,4-dihydroxyhept 27.3 98 0.0021 30.8 4.6 134 57-194 76-241 (255)
327 TIGR00219 mreC rod shape-deter 27.3 6.1E+02 0.013 25.0 11.0 119 194-321 98-241 (283)
328 cd06202 Nitric_oxide_synthase 27.2 51 0.0011 33.5 2.8 40 288-332 214-254 (406)
329 PF04085 MreC: rod shape-deter 27.2 1.9E+02 0.0041 25.6 6.0 50 272-321 61-119 (152)
330 TIGR03572 WbuZ glycosyl amidat 27.1 5E+02 0.011 23.9 9.7 134 52-190 76-228 (232)
331 PRK10537 voltage-gated potassi 27.1 4.3E+02 0.0094 27.2 9.3 71 113-192 285-359 (393)
332 PF03061 4HBT: Thioesterase su 26.9 84 0.0018 22.9 3.2 30 288-322 35-64 (79)
333 TIGR01769 GGGP geranylgeranylg 26.9 1.3E+02 0.0027 28.6 5.1 127 52-188 55-204 (205)
334 TIGR03787 marine_sort_RR prote 26.8 1.1E+02 0.0023 26.5 4.3 67 132-199 44-113 (227)
335 TIGR03275 methan_mark_8 putati 26.8 4E+02 0.0086 26.8 8.6 129 59-203 77-212 (259)
336 PF01053 Cys_Met_Meta_PP: Cys/ 26.6 66 0.0014 32.8 3.4 118 61-184 61-194 (386)
337 PRK05096 guanosine 5'-monophos 26.5 57 0.0012 33.6 2.9 69 119-187 106-177 (346)
338 PRK10816 DNA-binding transcrip 26.2 3.9E+02 0.0085 23.0 7.7 68 131-200 43-112 (223)
339 cd08606 GDPD_YPL110cp_fungi Gl 26.1 98 0.0021 29.4 4.3 45 149-198 235-282 (286)
340 cd06182 CYPOR_like NADPH cytoc 26.0 72 0.0016 30.4 3.4 41 288-332 83-123 (267)
341 cd08601 GDPD_SaGlpQ_like Glyce 26.0 1.3E+02 0.0027 28.1 4.9 45 149-198 208-253 (256)
342 PTZ00300 pyruvate kinase; Prov 25.8 1E+02 0.0022 32.6 4.7 166 131-310 159-381 (454)
343 PLN02252 nitrate reductase [NA 25.7 2.9E+02 0.0062 31.7 8.4 110 216-332 635-766 (888)
344 PRK06512 thiamine-phosphate py 25.5 3.4E+02 0.0075 25.6 7.8 102 60-190 29-139 (221)
345 PRK02615 thiamine-phosphate py 25.3 3.3E+02 0.0072 27.8 8.1 101 60-188 160-266 (347)
346 TIGR03684 arCOG00985 arCOG0415 25.3 1E+02 0.0023 27.1 4.0 53 273-328 72-130 (150)
347 PRK11107 hybrid sensory histid 25.2 6.1E+02 0.013 27.4 10.4 136 59-199 617-780 (919)
348 TIGR03815 CpaE_hom_Actino heli 25.0 2E+02 0.0044 27.7 6.3 63 132-199 19-81 (322)
349 PF07591 PT-HINT: Pretoxin HIN 25.0 24 0.00052 30.6 0.0 49 284-333 2-52 (130)
350 PRK07695 transcriptional regul 24.8 5.2E+02 0.011 23.3 9.8 103 60-190 18-123 (201)
351 PRK03562 glutathione-regulated 24.8 5E+02 0.011 28.2 9.7 118 51-193 401-522 (621)
352 PRK10610 chemotaxis regulatory 24.7 2.6E+02 0.0056 20.4 5.5 29 170-198 90-118 (129)
353 PRK04128 1-(5-phosphoribosyl)- 24.6 2.7E+02 0.0059 26.3 6.9 73 118-198 30-113 (228)
354 PF12264 Waikav_capsid_1: Waik 24.2 78 0.0017 30.0 3.1 60 297-359 86-149 (197)
355 PRK06015 keto-hydroxyglutarate 24.1 5.5E+02 0.012 24.3 8.8 120 60-203 19-142 (201)
356 cd08606 GDPD_YPL110cp_fungi Gl 24.1 1.1E+02 0.0025 28.9 4.3 32 48-79 243-277 (286)
357 PLN02363 phosphoribosylanthran 23.8 6.9E+02 0.015 24.4 9.7 74 53-141 47-131 (256)
358 cd02786 MopB_CT_3 The MopB_CT_ 23.8 1.3E+02 0.0028 24.4 4.0 24 296-323 44-67 (116)
359 cd08568 GDPD_TmGDE_like Glycer 23.6 2.4E+02 0.0052 25.8 6.2 58 145-203 78-138 (226)
360 PF09872 DUF2099: Uncharacteri 23.6 3.9E+02 0.0084 26.8 7.9 115 59-189 77-194 (258)
361 TIGR00451 unchar_dom_2 unchara 23.4 1.2E+02 0.0026 25.1 3.9 54 271-327 31-90 (107)
362 PRK06801 hypothetical protein; 23.4 2.2E+02 0.0048 28.2 6.3 130 58-191 85-235 (286)
363 PRK09935 transcriptional regul 23.3 3E+02 0.0065 23.1 6.3 40 160-200 78-117 (210)
364 PRK10403 transcriptional regul 23.3 3.1E+02 0.0067 22.8 6.4 38 161-199 82-119 (215)
365 CHL00162 thiG thiamin biosynth 23.2 98 0.0021 31.0 3.8 47 148-198 181-232 (267)
366 cd00377 ICL_PEPM Members of th 23.2 2.5E+02 0.0055 26.7 6.5 59 144-202 119-194 (243)
367 PRK08558 adenine phosphoribosy 23.2 77 0.0017 30.3 3.0 34 281-314 153-193 (238)
368 PRK09454 ugpQ cytoplasmic glyc 23.0 1.1E+02 0.0023 28.8 3.8 48 142-195 193-241 (249)
369 COG2871 NqrF Na+-transporting 22.9 65 0.0014 33.3 2.5 54 268-334 232-285 (410)
370 cd04451 S1_IF1 S1_IF1: Transla 22.8 2.9E+02 0.0062 20.8 5.5 45 244-306 4-50 (64)
371 TIGR00995 3a0901s06TIC22 chlor 22.8 60 0.0013 32.3 2.3 61 95-158 181-242 (270)
372 cd02778 MopB_CT_Thiosulfate-R- 22.8 1.2E+02 0.0026 24.8 3.7 56 256-323 11-66 (123)
373 PF03102 NeuB: NeuB family; I 22.8 2.9E+02 0.0062 26.8 6.8 75 111-188 70-145 (241)
374 cd06166 Sortase_D_5 Sortase D 22.7 1.9E+02 0.0042 24.5 5.0 31 290-321 58-88 (126)
375 PRK09468 ompR osmolarity respo 22.7 5E+02 0.011 22.7 7.8 67 131-199 48-116 (239)
376 COG0352 ThiE Thiamine monophos 22.6 6.8E+02 0.015 23.9 10.2 120 63-203 74-206 (211)
377 cd05828 Sortase_D_4 Sortase D 22.5 1.2E+02 0.0025 25.9 3.7 30 291-321 56-85 (127)
378 cd08556 GDPD Glycerophosphodie 22.5 3.6E+02 0.0077 23.0 6.7 58 145-203 48-111 (189)
379 TIGR02154 PhoB phosphate regul 22.5 1.4E+02 0.0031 25.2 4.2 39 160-199 77-115 (226)
380 PF07085 DRTGG: DRTGG domain; 22.4 1.5E+02 0.0032 24.1 4.2 40 49-88 39-85 (105)
381 TIGR01931 cysJ sulfite reducta 22.3 77 0.0017 34.1 3.1 59 268-331 381-457 (597)
382 TIGR02798 ligK_PcmE 4-carboxy- 22.3 59 0.0013 31.1 2.0 43 277-320 50-95 (222)
383 PF11303 DUF3105: Protein of u 22.3 1.2E+02 0.0026 26.9 3.8 34 172-205 40-74 (130)
384 TIGR01303 IMP_DH_rel_1 IMP deh 22.1 95 0.0021 32.8 3.7 73 111-187 216-292 (475)
385 PRK06354 pyruvate kinase; Prov 22.1 1.3E+02 0.0028 32.9 4.7 63 131-194 190-254 (590)
386 cd08605 GDPD_GDE5_like_1_plant 22.1 1.1E+02 0.0023 29.1 3.7 30 48-77 248-280 (282)
387 TIGR01304 IMP_DH_rel_2 IMP deh 22.0 1.3E+02 0.0029 30.9 4.6 51 131-189 154-216 (369)
388 PRK15369 two component system 22.0 2.9E+02 0.0064 22.6 5.9 39 161-200 79-117 (211)
389 PF05690 ThiG: Thiazole biosyn 21.9 57 0.0012 32.3 1.9 45 148-196 167-216 (247)
390 cd08608 GDPD_GDE2 Glycerophosp 21.6 1.5E+02 0.0032 30.2 4.8 54 142-201 207-261 (351)
391 PRK14024 phosphoribosyl isomer 21.5 6.8E+02 0.015 23.5 8.9 104 92-201 6-119 (241)
392 PRK04169 geranylgeranylglycery 21.2 2E+02 0.0043 27.9 5.3 69 119-191 138-215 (232)
393 PRK10161 transcriptional regul 21.1 5.5E+02 0.012 22.2 8.5 66 132-199 46-115 (229)
394 PRK15447 putative protease; Pr 20.9 2.5E+02 0.0053 27.6 6.0 68 132-201 28-105 (301)
395 cd06190 T4MO_e_transfer_like T 20.6 1.4E+02 0.0029 27.0 3.9 51 278-333 53-106 (232)
396 cd00288 Pyruvate_Kinase Pyruva 20.6 1.4E+02 0.003 31.8 4.5 62 131-194 186-249 (480)
397 PRK04046 translation initiatio 20.6 5E+02 0.011 24.9 7.8 112 118-252 74-206 (222)
398 cd02794 MopB_CT_DmsA-EC The Mo 20.5 1.6E+02 0.0035 24.3 4.1 24 296-323 43-66 (121)
399 PF03009 GDPD: Glycerophosphor 20.4 1E+02 0.0022 27.2 3.0 31 48-78 220-253 (256)
400 PRK13435 response regulator; P 20.3 4.7E+02 0.01 21.2 7.9 63 132-200 50-115 (145)
401 cd08559 GDPD_periplasmic_GlpQ_ 20.3 95 0.0021 30.0 3.0 30 48-77 254-294 (296)
402 PF06506 PrpR_N: Propionate ca 20.3 5.2E+02 0.011 23.0 7.5 36 59-94 22-58 (176)
403 PRK11173 two-component respons 20.3 5.9E+02 0.013 22.4 7.8 43 160-203 75-118 (237)
404 cd08580 GDPD_Rv2277c_like Glyc 20.1 1.2E+02 0.0027 29.3 3.7 46 143-194 214-261 (263)
405 PF02662 FlpD: Methyl-viologen 20.0 89 0.0019 27.1 2.5 19 59-77 41-59 (124)
No 1
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1.8e-114 Score=841.99 Aligned_cols=301 Identities=41% Similarity=0.649 Sum_probs=281.9
Q ss_pred CcEEEEEeCc-----hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCC---ccccCCCCeeEEEEEecChh
Q 017770 50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 121 (366)
Q Consensus 50 ~K~vWiw~~~-----K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g---~~~~~~gk~v~~~~~v~~~e 121 (366)
||++|||.++ |++||+|||||||+|+|++++++.+++|+++ .+++.+++ ..++.+|++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i---~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRI---KVAADDPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe---eEEEEcCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999987 9999999999999999999777777777766 44445555 34678899999999999999
Q ss_pred hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
|++.++.+.+.++++|++++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++++++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999988899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce
Q 017770 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH 281 (366)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVH 281 (366)
+++. ++++++|++||||+|+|+||||||||||||+|++||||||||||+|||||||||+++|||++|||||||||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh 233 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH 233 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence 8854 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEeeccCCCceeeEEEeec-----cccCCC
Q 017770 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFL-----VCTSSS 356 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~~~~~~g~~~sviLQnA-----~~~~~~ 356 (366)
||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++++||||| +.+.++
T Consensus 234 aYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~----~g~~~~viLQnaetIrlv~~dG~ 309 (344)
T PRK02290 234 AYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEY----GGKRIRTILQNAETIRLVTPDGK 309 (344)
T ss_pred eEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEe----CCeEEEEEEecCcEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999 899999999996 456667
Q ss_pred ceeee
Q 017770 357 LIPSS 361 (366)
Q Consensus 357 ~~~~~ 361 (366)
++||.
T Consensus 310 ~vsVt 314 (344)
T PRK02290 310 PVSVV 314 (344)
T ss_pred Eeeee
Confidence 77764
No 2
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=2.4e-114 Score=843.95 Aligned_cols=305 Identities=45% Similarity=0.738 Sum_probs=287.6
Q ss_pred cEEEE-----EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeee---cCCcc------ccCCCCeeEEEEE
Q 017770 51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE 116 (366)
Q Consensus 51 K~vWi-----w~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~---~~g~~------~~~~gk~v~~~~~ 116 (366)
|++|| |+++|++||+|||+|||+|++++++.+++++|+++.++.+..- +++.. ++..|+.++.+++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 78999 8899999999999999999999999999999999999885332 22322 3577999999999
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev 196 (366)
|.++++++.++...+..+|+|++++||||||||||||++|+++++||+.++|++||+++|++||+|+|||+|+|+|++++
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 017770 197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN 276 (366)
Q Consensus 197 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN 276 (366)
++++++++. .++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||+++|||++||||||
T Consensus 161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN 238 (354)
T PF01959_consen 161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN 238 (354)
T ss_pred HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence 999999864 266789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEeeccCCCceeeEEEeec-----c
Q 017770 277 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKALALAGHSEPSLFLWFL-----V 351 (366)
Q Consensus 277 AGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~~~~~~g~~~sviLQnA-----~ 351 (366)
|||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++|+||||| +
T Consensus 239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~----~g~~~svilQnaetIRlv 314 (354)
T PF01959_consen 239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEA----DGKRISVILQNAETIRLV 314 (354)
T ss_pred cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEe----CCeEEEEEEecCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999996 6
Q ss_pred ccCCCceeee
Q 017770 352 CTSSSLIPSS 361 (366)
Q Consensus 352 ~~~~~~~~~~ 361 (366)
.|.+..+||.
T Consensus 315 ~p~G~~vsVt 324 (354)
T PF01959_consen 315 GPDGEPVSVT 324 (354)
T ss_pred CCCCCEeeee
Confidence 7788888875
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-110 Score=803.22 Aligned_cols=307 Identities=41% Similarity=0.671 Sum_probs=287.0
Q ss_pred CCcEEEE------EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee-----eee--cCC--------------
Q 017770 49 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-----LFI--KEG-------------- 101 (366)
Q Consensus 49 ~~K~vWi------w~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~-----l~~--~~g-------------- 101 (366)
.+|++|+ |++.|+.+|+|||+|+|.+++++++.+.+++||++.++.| +++ ++|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4899999 7788999999999999999999999999999999999988 222 333
Q ss_pred -------ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH
Q 017770 102 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 174 (366)
Q Consensus 102 -------~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~ 174 (366)
..+...|+.++.|+.|.++++++.++.....++|+|+.++||||||||||||++|..+++|||.|+|++||++
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 1335679999999999999997777766666899999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCce
Q 017770 175 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARG 254 (366)
Q Consensus 175 al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~g 254 (366)
||++||+|+|||+|+++|+++|+++.++++. .++++++|++|+||+|+|+|+||||||||||||.+||||||||+|+|
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~g 238 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRG 238 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCc
Confidence 9999999999999999999999999998853 57789999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEe
Q 017770 255 LFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334 (366)
Q Consensus 255 lFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~ 334 (366)
||||||||.+||||++|||||||||||||+++|||||+||+||++||+|++||.+|++|.++|||+|||+|||+||||++
T Consensus 239 mFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey 318 (376)
T COG1465 239 MFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEY 318 (376)
T ss_pred EEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCceeeEEEeec-----cccCCCceeee
Q 017770 335 LALAGHSEPSLFLWFL-----VCTSSSLIPSS 361 (366)
Q Consensus 335 ~~~~~g~~~sviLQnA-----~~~~~~~~~~~ 361 (366)
+|.++++||||| +.+-+.+|||+
T Consensus 319 ----~g~~i~tiLQNAETIkLv~~dG~pvSV~ 346 (376)
T COG1465 319 ----EGVEISTILQNAETIKLVNPDGEPVSVA 346 (376)
T ss_pred ----cCcEEEEEeccceeEEEEcCCCcEeeeE
Confidence 799999999997 67888888875
No 4
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=95.38 E-value=0.048 Score=51.50 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=38.7
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEee----eeEEEeccceEEEEEEeeccCCCceeeE
Q 017770 279 PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVV----GRVKIESRPLILVEAKALALAGHSEPSL 345 (366)
Q Consensus 279 aVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~V----GRvKIE~RPLlLIeAe~~~~~~g~~~sv 345 (366)
|-.|.|.+++|.++-++||+.||+||++|.+|+..-..| -|-.-.++.++-||.+ +|+++.+
T Consensus 14 pg~a~V~~~~G~~k~m~~L~iGD~Vla~d~~G~~~yS~V~~flhr~~~~~~~F~~i~te-----~g~~l~L 79 (217)
T PF01079_consen 14 PGDATVTLEDGGRKRMSDLKIGDRVLAVDSDGKLVYSPVIMFLHRDPEQRAEFVVIETE-----DGRSLTL 79 (217)
T ss_dssp -TT-EEEBTTS-EEEGGG--TT-EEEEE-TTS-EEEEEEEEEEEEEEEEEEEEEEEEET-----TS-EEEE
T ss_pred CCCCEEEeCCCCEeEHHHCCCCCEEEEecCCCcEEEEeEEEEeccCccccEEEEEEEcC-----CCCeEEe
Confidence 445789999999999999999999999999998654332 3334456677777655 4666543
No 5
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.70 E-value=1.3 Score=40.33 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=66.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch--hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~--~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.+.+.+..++|.|+|++++...+. +..+++-+-. ..-|.. .++.+.+.++++++... ..++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-------------~~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-------------RELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-------------HHcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 346689999999999998653221 2222221110 011222 35677888887776653 5788
Q ss_pred EEEeCCCCeeee--h---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 136 IVIDLPDWQVIP--A---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 136 vvv~~~DW~iIP--l---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.+..+|-+..+ + +++.+.+. .+..+++ .++++++++.++ +.|+|||++-+
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888866644333 2 33333321 2335554 578888888664 55999998754
No 6
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.05 E-value=0.95 Score=40.75 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=72.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-++++.++++.|++.+-++-.+..-.+.+..+....| +..++ -..|.++++++.+... +++.++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~iG-ag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALIG-AGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEEE-EEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4688999999999999987654332233333322111 12222 2367788887776653 5677766
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
-..| +.++...+..+..++..+.|.+|++.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4444 345555555566788899999998766 578999999987664
No 7
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=91.81 E-value=0.72 Score=43.91 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=67.1
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeee---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017770 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIP---lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (366)
.+++.+.+.++.-.|.++.. ..|+++++..+=. +- +++++.+.+..+..++..++..+.. ....+|+.|+|||
T Consensus 13 ~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 13 QIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTL 88 (249)
T ss_pred eEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEE
Confidence 46788888888877766653 4999999776422 23 3445555555456889999888765 5688999999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 017770 187 VLK-VEDVKAVLALKEYFD 204 (366)
Q Consensus 187 vl~-~~d~~ev~~l~~~~~ 204 (366)
++. .+++++++++.+.+.
T Consensus 89 ivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 89 LVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 996 577899988887763
No 8
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=91.04 E-value=0.74 Score=35.76 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEe-eeeEEEe-ccceEEEEEE
Q 017770 282 AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAV-VGRVKIE-SRPLILVEAK 333 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG~eVLvVd~~-G~tR~a~-VGRvKIE-~RPLlLIeAe 333 (366)
+.|++++|....+.+|+.||+|+.+|.. ++.+... +-..+-+ ..||+.|..+
T Consensus 7 t~V~~~~gg~~~i~~l~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 61 (100)
T smart00306 7 TLVLTEDGGIKKIEELEEGDKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTE 61 (100)
T ss_pred CEEEcCCCCEEEHHHcCCCCEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEEC
Confidence 5688999999999999999999999973 3322211 1112211 4566666654
No 9
>PRK05826 pyruvate kinase; Provisional
Probab=90.95 E-value=0.56 Score=48.99 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=89.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.+++.+.-|++.|+|.|+++- .+++.++++.++ +...|. .+..+.+|.+++-++.+-.-....|-
T Consensus 174 ~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~-------------l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 174 KDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRL-------------LREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred hhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 578899999999999999985 345555555432 233344 56788899999988887666656888
Q ss_pred EEEeCCCCe-eeehhhh-------hhcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlENl-------iA~~q~~~~~l~-a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
+++--.|-. =+|.|.+ ++.....+.-++ | ...+-.|+--...+..-|+|+|+|.-+.
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 887444432 2345543 333322222233 3 3456688888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 321 yPveaV~~m~~I~~ 334 (465)
T PRK05826 321 YPVEAVEAMARICK 334 (465)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 10
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.87 E-value=0.98 Score=43.23 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017770 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (366)
..+++...+.++.-.|.++.. ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 456788888899887777653 4899999765 444 4678998888888888999988754 555789999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 017770 185 GIVLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~ 203 (366)
||++. .++.++++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99986 56788888877654
No 11
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.49 E-value=1 Score=43.86 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=70.3
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017770 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (366)
..++..+.+.++.-.|.++.. ..|+++|+.. ....--+++++.+++..+...+..+.+.+. ..+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 446788888899887777653 4999999765 333335678888888888888888887765 55588999999999
Q ss_pred EEe-cCCHHHHHHHHHhh
Q 017770 187 VLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 187 vl~-~~d~~ev~~l~~~~ 203 (366)
++. .++.++++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 996 46688888776655
No 12
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.93 E-value=1.3 Score=42.50 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017770 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (366)
..+++...+.++.-.|.++.. ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEP-VIIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhCCCCC
Confidence 446788888898876666653 4899999665 444 4678888888888888999988865 445779999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 017770 185 GIVLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~ 203 (366)
||++. .++.++++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99986 56788888876654
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=89.31 E-value=1.3 Score=46.44 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=91.9
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+.|++.+.-|++.|+|.+.++. .+++.++++.++. ...|+....+.+|.+++-++.+-.-....|-
T Consensus 147 ekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l-------------~~~~~~~~IiaKIEt~eav~nldeI~~~~Dg 213 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKAL-------------GAKGGDIMIICKIENHQGVQNIDSIIEESDG 213 (454)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 3578899999999999998874 3345555554441 1234566788899999999888777777888
Q ss_pred EEEeCCC-Ceeeehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~D-W~iIPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|--.| .-=||.|++-+ .+...+.-+|.. ..+-.|+--...+.--|+|+|+|.-+.
T Consensus 214 ImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~ 293 (454)
T PTZ00300 214 IMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGK 293 (454)
T ss_pred EEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCC
Confidence 8885555 34477777543 222222223321 234577888888999999999996654
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 294 yP~eaV~~m~~I~~ 307 (454)
T PTZ00300 294 YPNEVVQYMARICL 307 (454)
T ss_pred CHHHHHHHHHHHHH
Confidence 356667777764
No 14
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=88.55 E-value=5.2 Score=38.33 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=68.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+.-.+..|.+.|+|.+.+.... .+..+++-+.+ ..-|. -.++++.+.++.+++... +++++
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a-------------~~lGl--~~lvevh~~~E~~~A~~~--gadiI 184 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAALDDEQLKELLDYA-------------HSLGL--DVLVEVHDEEELERALKL--GAPLI 184 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHHc--CCCEE
Confidence 3457899999999998876432 11111111110 11132 367789999988775543 57888
Q ss_pred EEeCCCCeeee-----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 017770 137 VIDLPDWQVIP-----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (366)
Q Consensus 137 vv~~~DW~iIP-----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~e 195 (366)
-++.+|=+.-+ .+.++..+.+ ...+++ ...++++++.++ +.|+|||++-+ +||.+
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECHHHcCCCCHHH
Confidence 88765543332 2444443321 224555 456888887765 56999998744 56644
No 15
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.55 E-value=1.7 Score=39.74 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=57.7
Q ss_pred hhHHHHHHHhCCcEEEEcC---------cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 60 KQVMTAAVERGWNTFVFLS---------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~---------~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
.+.+..|.|.|+|.+++.. +..+..+...+. | .+-.++.+.++++...+..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~-- 141 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAK-- 141 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHH--
Confidence 3478999999999777631 112233333222 2 1123446678877644443
Q ss_pred CCCCeEEEeCCCCe------eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 131 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 131 ~~~~~vvv~~~DW~------iIPlENliA~~q~-~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+++.+...+.+ ..|--+.+.++.. .+..+++. +++.++++. +++.|+|||++-+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~---~l~~GadgV~vGsa 208 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK---ALELGADAVVVGSA 208 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 35788776432221 1121234443322 23344443 445555554 55579999998754
No 16
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.27 E-value=3 Score=40.01 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=64.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.|.|+|+++++..-.+...++-+. .++.|...+.++.- ++.+.++.++......-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~-------------~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA-------------AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH-------------HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 5789999999999999997533332222111 12334333333333 345565666654333333332
Q ss_pred e--CCCC--ee-eehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~--~~DW--~i-IPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
. +++= +. -++.+.|+.+.+. +..|+. .+++.++++. +.+.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1121 12 2456777766543 233443 3667777765 77899999999764
No 17
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=87.56 E-value=0.59 Score=46.62 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=85.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+.-|++.|+|.|-+.. .+++.+.++.++ +++.|+.+..+.+|.+++-++.+-.-...+|-+
T Consensus 177 kD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~-------------l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgi 243 (348)
T PF00224_consen 177 KDKEDIKFAVENGVDFIALSFVRSAEDVKELRKI-------------LGEKGKDIKIIAKIETKEAVENLDEILEASDGI 243 (348)
T ss_dssp HHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHH-------------HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHH-------------hhhcCcccceeeccccHHHHhhHHHHhhhcCeE
Confidence 689999999999999776653 224455555444 444556677888999999998887777778999
Q ss_pred EEeCCC------Ceeeeh--hhhhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecC-----C
Q 017770 137 VIDLPD------WQVIPA--ENIVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE-----D 192 (366)
Q Consensus 137 vv~~~D------W~iIPl--ENliA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~-----d 192 (366)
+|.-.| .+-+|+ +.||+.....+.-+|.. ..+-.|.--...+..-|+|||+|..+ -
T Consensus 244 miaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~ 323 (348)
T PF00224_consen 244 MIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKY 323 (348)
T ss_dssp EEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSS
T ss_pred EEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCC
Confidence 985433 333343 23444444334444442 23557788888899999999999943 2
Q ss_pred H-HHHHHHHHhhc
Q 017770 193 V-KAVLALKEYFD 204 (366)
Q Consensus 193 ~-~ev~~l~~~~~ 204 (366)
| +.|+-+.+++.
T Consensus 324 p~~~v~~~~~i~~ 336 (348)
T PF00224_consen 324 PVEAVKTMARIIR 336 (348)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3 55666666653
No 18
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=87.49 E-value=1.9 Score=41.42 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
+...++.+|+.|+++|++|- ++.+.++++-+-.+..|+ |++ + -. -.
T Consensus 80 ~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~-----------G~R--------g------------~~--~~ 126 (256)
T PRK10558 80 EPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPE-----------GIR--------G------------VS--VS 126 (256)
T ss_pred CHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCC-----------CcC--------C------------CC--cc
Confidence 45666777777777777764 445556555555554441 111 0 00 00
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017770 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (366)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~~ 194 (366)
....+|...| ..++.. +.++.+++.+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 127 ~~~~~y~~~~--~y~~~a-n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 127 HRANMFGTVP--DYFAQS-NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred ccccccCChH--HHHHHh-ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 1123444333 334433 4567899999999888888888875 8999999998765
No 19
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=87.21 E-value=3.2 Score=38.05 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=61.2
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---------eehhhhhhcc---cCCCceEEEEcCCHHHHH--HHH
Q 017770 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEAQ--IFL 176 (366)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i---------IPlENliA~~---q~~~~~l~a~v~~~~eA~--~al 176 (366)
.+.|+...+++-++.+.. ...|+++++..| .+ .=+++++..+ +..+..++..+++.+... .-+
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl 78 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDL 78 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhh
Confidence 356777778777666654 478999998777 33 2233444333 334458999999976532 112
Q ss_pred HHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017770 177 EALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (366)
Q Consensus 177 ~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (366)
.+|+.|+|||++. .+++++++++.+.+..
T Consensus 79 ~~l~~g~~gI~lP~ves~~~~~~~~~~~~~ 108 (221)
T PF03328_consen 79 EALDAGADGIVLPKVESAEDARQAVAALRY 108 (221)
T ss_dssp HHHHTTSSEEEETT--SHHHHHHHHHHHSH
T ss_pred hhcccCCCeeeccccCcHHHHHHHHHHHhh
Confidence 2999999999997 4578999988887754
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.12 E-value=2 Score=41.83 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=83.2
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChhhh
Q 017770 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQEL 123 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~ed~ 123 (366)
+...++.+|+.|+++||+|- +++|.++++-+-.++.|+-..+- +.+..-+..+..++.|.+++-+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999996 56788887777777766322110 1112234567788899998877
Q ss_pred hhhcccc--CCCCeEEEeCC----------CCe---ee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017770 124 QQLQPAD--GQAENIVIDLP----------DWQ---VI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 124 e~~~~~~--~~~~~vvv~~~----------DW~---iI-PlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (366)
+.+..-. ...+.+.+-.. +|. +. =++.++++.+..+..+-..+.+.++++.+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 7654432 33566665221 122 11 13555655554444444457888877754 689999888
Q ss_pred EecCC
Q 017770 188 LKVED 192 (366)
Q Consensus 188 l~~~d 192 (366)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77764
No 21
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.62 E-value=2 Score=39.07 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.+|..++.+.+||+ ++++.|+|+|+|+.-+|++++++.+.+.
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 35999999999877 5677999999999999999998877663
No 22
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.42 E-value=3.6 Score=37.58 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=58.2
Q ss_pred chhHHHHHHHhCCcEEEEcCc--------c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 59 SKQVMTAAVERGWNTFVFLSE--------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~--------~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
..+.+..|.|.|+|.++..-. + .+..+...+. .+.. .+..+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 456689999999996554321 1 1222222220 1222 3346677777654433
Q ss_pred cCCCCeEEEeCCCCe------eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 130 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 130 ~~~~~~vvv~~~DW~------iIPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+++.+...+.+ .-+.-+++.++... +..+++ .++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 34788876432221 11223344443322 334444 3456666664 56789999998754
No 23
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.40 E-value=2.4 Score=41.10 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=63.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vv 137 (366)
-.+.+..|-++|+|+++++..-.+...++... .++.|.....++.-++ .+.++.++......=|++
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999997433333322222 1223433344444444 456666665432222222
Q ss_pred E--eCCCC-eeee--hhhhhhcccCC-Cc--eEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 I--DLPDW-QVIP--AENIVASFQGS-GK--TVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v--~~~DW-~iIP--lENliA~~q~~-~~--~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
= -.++= +-+| ++++++.+... +. -+=-.+++.++|+. +.+.|+|||++-+.
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 1 11111 1223 55666665432 11 12234677777775 67899999998764
No 24
>PLN02591 tryptophan synthase
Probab=86.09 E-value=3.1 Score=40.20 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=62.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv 137 (366)
-.+.+..|-|+|+|++|+++=-.|...++... .++.|-....++.- ++.+.+..++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAE-------------AAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 46789999999999999986222222222221 11122222233322 33455566665543333333
Q ss_pred Ee--CCCCe-eee--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ID--LPDWQ-VIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~--~~DW~-iIP--lENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
=. .++.+ -+| +++.++.+.+. +..|+ ..+++.++++. +++.|+|||++-+.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGSa 220 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGSA 220 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECHH
Confidence 10 11221 223 45666665542 22333 34677777774 78899999999773
No 25
>PTZ00066 pyruvate kinase; Provisional
Probab=85.57 E-value=3 Score=44.44 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=91.0
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.||+.+ .-|++-|+|.|-... .+++.++++.++ +++.|+.+..+.+|.+++-++.+..-...+|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 577776 899999999554332 224444544444 23345567788899999999998888888899
Q ss_pred EEEeCCCCee-eehhhhh-------hcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQV-IPAENIV-------ASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~i-IPlENli-------A~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|.-.|--+ ||+|.+- ......+.-+|. ...+-.|+--.+.+..-|+|||+|.-+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 9996656554 7887753 222222223332 1345578888899999999999997664
Q ss_pred --HHHHHHHHHhhcc
Q 017770 193 --VKAVLALKEYFDG 205 (366)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 357 yPveaV~~m~~I~~~ 371 (513)
T PTZ00066 357 FPVEAVNIMAKICFE 371 (513)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777643
No 26
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=85.56 E-value=6.4 Score=39.47 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=75.9
Q ss_pred eeccCCCCCCCCcEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec
Q 017770 39 MCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS 118 (366)
Q Consensus 39 ~~~~~~~~~~~~K~vWiw~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~ 118 (366)
|..|+.-..-....=|.|--...-+.+-.++++|-+++++.+. ..+.+.. ++ ..=..++..|+.+-.|+.|.
T Consensus 33 ~~~~~~~~~~~~~~~W~~ql~~~~~~~i~~~~~d~vVID~~~~--g~~~~~f---s~---~~i~~Lk~~g~~viaYlSvG 104 (315)
T TIGR01370 33 MTPPSKKPALSAVQHWGYQLQNADLNEIHTSPFELVVIDYSKD--GTEDGTY---SP---EEIVRAAAAGRWPIAYLSIG 104 (315)
T ss_pred cCCccccccccccceEEEEeCCCChhhhhccCCCEEEEccccc--cCcccCC---CH---HHHHHHHhCCcEEEEEEEch
Confidence 4333333333444567776433334444588999999987531 0000100 00 00012345688888998988
Q ss_pred ChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHH----HHHhhcccCeEEEecCCH
Q 017770 119 TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~a----l~~LE~G~DGVvl~~~d~ 193 (366)
.-|+-..-. .++|+.+|-+-++..-.+=.+.-+.-..+++=-..+ -.++++|.|||.|++=|.
T Consensus 105 e~E~~R~y~------------~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 105 AAEDYRFYW------------QKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred hccccchhh------------hhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 777621111 226777888888776555445555566665433333 345689999999987554
No 27
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.32 E-value=1.7 Score=41.68 Aligned_cols=136 Identities=11% Similarity=0.177 Sum_probs=82.2
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecC-------------CccccCCCCeeEEEEE
Q 017770 53 VWIWT--ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSIIE 116 (366)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~-------------g~~~~~~gk~v~~~~~ 116 (366)
.|+-. .+...++.+|+.|+++|+||- ++.+.++++-+-.+..|+-..+ .+.+..-+..+..+..
T Consensus 65 ~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~ 144 (249)
T TIGR03239 65 PVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQ 144 (249)
T ss_pred cEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEE
Confidence 45533 367889999999999999995 5577888777776766632211 0122233456678888
Q ss_pred ecChhhhhhhcccc--CCCCeEEEeCCC----------Ceeee----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh
Q 017770 117 VSTPQELQQLQPAD--GQAENIVIDLPD----------WQVIP----AENIVASFQGSGKTVFAISKTPSEAQIFLEALE 180 (366)
Q Consensus 117 v~~~ed~e~~~~~~--~~~~~vvv~~~D----------W~iIP----lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE 180 (366)
|++++-++.+..-. ...+.+.+-..| +.--+ .+.++.+....+..+-....+.++++.+ ++
T Consensus 145 IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~~~~~~~---~~ 221 (249)
T TIGR03239 145 IESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADARRY---LE 221 (249)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCHHHHHHH---HH
Confidence 99988776644433 346677763322 22111 2333443333333344446777766655 68
Q ss_pred cccCeEEEecC
Q 017770 181 QGLGGIVLKVE 191 (366)
Q Consensus 181 ~G~DGVvl~~~ 191 (366)
+|.+=+++..|
T Consensus 222 ~G~~~~~~~~D 232 (249)
T TIGR03239 222 WGATFVAVGSD 232 (249)
T ss_pred cCCCEEEEhHH
Confidence 99987777665
No 28
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.11 E-value=1.8 Score=42.39 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 149 ENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 149 ENliA~~q~~---~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
++.+.++... ..+|.+++.|.|||+.+ +|.|+|.|+|+.-++++++++.+.+
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A---~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNA---MNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4444444332 25799999999998765 5799999999999999998887765
No 29
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=84.07 E-value=1.4 Score=38.20 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccceeeeeEE
Q 017770 169 PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLSLMKA 218 (366)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~-------------ev~~l~~~~~~~~~~~~~l~L~~a 218 (366)
-=+....+.+|++|+|||++..--++ -+..+++++++...+.+++.+...
T Consensus 39 rv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~ 101 (124)
T PF02662_consen 39 RVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWI 101 (124)
T ss_pred ccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEe
Confidence 34678899999999999999433222 245556666655555555555443
No 30
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=82.95 E-value=6.3 Score=36.05 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEe
Q 017770 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334 (366)
Q Consensus 278 GaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~ 334 (366)
|-..=.+..-|.-|+||.+++.||+|.+-...|+.-. .+ .+|+++|=+-.
T Consensus 49 ~~l~~~v~~~G~~s~~L~~l~~Gd~v~i~gP~G~~f~-----~~--~~~~vliAgGt 98 (233)
T cd06220 49 GPNSITVKKVGEATSALHDLKEGDKLGIRGPYGNGFE-----LV--GGKVLLIGGGI 98 (233)
T ss_pred CeEEEEEEecChHHHHHHhcCCCCEEEEECcCCCCcc-----CC--CCeEEEEecCc
Confidence 3344445556888999999999999999888887321 12 68999886543
No 31
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=82.35 E-value=14 Score=33.59 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcc---h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN---Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~~---~----~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed 122 (366)
.+|+.- .+-+.+..+++.|+|.+++.... . +.++.+++-..+-.+-+.++......+.. ..-.++.+
T Consensus 75 pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~ 150 (234)
T cd04732 75 PVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEE 150 (234)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHH
Confidence 355544 57888999999999999987632 2 23334443223333444444433221110 00112222
Q ss_pred hhhhccccCCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 123 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+-+.... ..++.+++...+ -+-+++| ++.++ +..+..+++ .+.+.++++.++. .|+|||++-+.
T Consensus 151 ~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~~ 221 (234)
T cd04732 151 LAKRFEE-LGVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGKA 221 (234)
T ss_pred HHHHHHH-cCCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 2221111 235666664321 1112222 22222 122334444 4688888887665 49999998653
No 32
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=82.14 E-value=7.4 Score=37.24 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=59.2
Q ss_pred eEEEEEEEEEcCCc-ceEEEeecC-------CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCcee
Q 017770 216 MKATVTRVDVAGMG-DRVCVDLCS-------LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHA 282 (366)
Q Consensus 216 ~~atVt~V~~vGmG-DRVCVDtcS-------ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHa 282 (366)
-+++|++++++.-. ...++..-. -++||+=+.| -.... ..|||-+-. |-+.=
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l---------~~~~~------~~~pySias~p~~~~~l~l 70 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQV---------TIPGV------GEVPISICSSPTRKGFFEL 70 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEE---------EcCCC------CceeeEecCCCCCCCEEEE
Confidence 35888888888765 455665321 1456653332 11111 124555422 33444
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 283 Yv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|..-|.-|+||..|+.||+|.+-...|+.-. .- ..+.+|+++|=+=
T Consensus 71 ~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f~--~~--~~~~~~~llIAgG 117 (289)
T PRK08345 71 CIRRAGRVTTVIHRLKEGDIVGVRGPYGNGFP--VD--EMEGMDLLLIAGG 117 (289)
T ss_pred EEEeCChHHHHHHhCCCCCEEEEeCCCCCCCC--cc--cccCceEEEEecc
Confidence 45556889999999999999999998886321 10 1235799988543
No 33
>PRK05826 pyruvate kinase; Provisional
Probab=81.72 E-value=11 Score=39.51 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017770 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (366)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (366)
..|.+....+|+.|+|||.+. .++++++++++++++.
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~ 210 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE 210 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 567777788999999999998 7889999999999854
No 34
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.52 E-value=7.9 Score=38.96 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=75.8
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--- 132 (366)
|.-+.++...|-|-|.-+++.. -+.|...... ..++ .++..++.-+- .++++.+++..+...
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~~-----------~~~l~v~~~vg-~~~~~~~~~~~Lv~ag~~ 111 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDMH-----------EQGLIASISVG-VKDDEYDFVDQLAAEGLT 111 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhcc-----------ccccEEEEEec-CCHHHHHHHHHHHhcCCC
Confidence 3557999999999999999977 1232222111 1111 12332222222 246666776665543
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.|.++|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+ .+.|+|++.+.
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l---~~aGad~i~vg 168 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVREL---ENAGADATKVG 168 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHH---HHcCcCEEEEC
Confidence 499999999988888999999887653 34666 48888888665 46899998855
No 35
>PLN02762 pyruvate kinase complex alpha subunit
Probab=80.07 E-value=6.3 Score=42.02 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=91.0
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC--CeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~g--k~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+||+.+.-|++-|+|.|-+.. .+++.++++.++ +++.| ..+..+.+|.+++-++.+..-...+|
T Consensus 204 kD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sD 270 (509)
T PLN02762 204 KDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRASD 270 (509)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcC
Confidence 578889999999999655442 224444444444 22222 24568889999999998888778899
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017770 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (366)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (366)
-++|--.|--+ ||+|++-. .....+.-+|.. ..+-.|+--.+.+.--|+|+|+|.-+.
T Consensus 271 giMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G 350 (509)
T PLN02762 271 GAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 350 (509)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCC
Confidence 99996666654 88888643 221222234432 345578888888999999999999664
Q ss_pred ---HHHHHHHHHhhc
Q 017770 193 ---VKAVLALKEYFD 204 (366)
Q Consensus 193 ---~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 351 ~yPveaV~~m~~I~~ 365 (509)
T PLN02762 351 LYPEKALSVLRSVSL 365 (509)
T ss_pred CCHHHHHHHHHHHHH
Confidence 366777777664
No 36
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.96 E-value=3.4 Score=40.80 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=36.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+++++++..+++
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 5799999999998765 5899999999999999998887766
No 37
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=79.78 E-value=11 Score=34.30 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
...+.+..+.+.|+|.+.++... .+..+.+.+ .+.. .+..+.+.++.+.+.. ...+++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~--~i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIK--VIPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCE--EEEeCCCHHHHHHHHH--cCCCEE
Confidence 56788999999999999987532 222222221 1222 2334556666555443 347888
Q ss_pred EEeCCC------CeeeehhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 137 VIDLPD------WQVIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 137 vv~~~D------W~iIPlENliA~~q~-~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
++.... ....+...++.++.+ .+..+++ .+++.++++ ++++.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~---~~l~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIA---AALALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHH---HHHHcCCcEEEEchh
Confidence 874421 110122233333221 1233443 344445554 445689999999754
No 38
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=79.65 E-value=4.1 Score=32.11 Aligned_cols=88 Identities=25% Similarity=0.279 Sum_probs=49.6
Q ss_pred EEEEEEEEEcCCcc---eEEEeec---CCCCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEe-cC
Q 017770 217 KATVTRVDVAGMGD---RVCVDLC---SLMRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLV-PG 288 (366)
Q Consensus 217 ~atVt~V~~vGmGD---RVCVDtc---Sll~~GEGmLVGS~S~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~-Pg 288 (366)
+|+|++++.+.-.= |...+.. --+.||+=+.|.-.-. .+....|| +++.| =+.|-.+=.|.. |+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~------~~~~~R~yS~~s~~--~~~~~~~~~ik~~~~ 72 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPIN------GKQVSRPYSPASSP--DDKGYLEFAIKRYPN 72 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEET------TEEEEEEEEBCSST--TSSSEEEEEEEECTT
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccC------CcceecceeEeeec--CCCCcEEEEEEeccC
Confidence 57888888887432 3333322 2356666544432211 12223444 23333 133445445554 44
Q ss_pred C-ceeeeeeccCCCeEEEEcCCCCe
Q 017770 289 G-KTCYLSELKSGKEVIVVDQKGRQ 312 (366)
Q Consensus 289 g-kT~YLSEL~sG~eVLvVd~~G~t 312 (366)
| -|+||.+|+.||+|.+-...|+.
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 73 GRVSRYLHQLKPGDEVEIRGPYGNF 97 (99)
T ss_dssp SHHHHHHHTSCTTSEEEEEEEESSE
T ss_pred CHHHHHHHhCCCCCEEEEEEccccc
Confidence 4 68899999999999998888764
No 39
>PRK05713 hypothetical protein; Provisional
Probab=79.54 E-value=15 Score=35.37 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=28.8
Q ss_pred ecCCc-eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 286 VPGGK-TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 286 ~Pggk-T~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.|+|+ |.||.+|+.||+|.+-...|.. ... +-....||+++|=+
T Consensus 156 ~~~G~~s~~l~~l~~Gd~v~l~~p~gg~--~~~-~~~~~~~~~vlIAg 200 (312)
T PRK05713 156 SRPGAFCDAARQLQVGDLLRLGELRGGA--LHY-DPDWQERPLWLLAA 200 (312)
T ss_pred cCCCccchhhhcCCCCCEEEEccCCCCc--eEe-cCCCCCCcEEEEec
Confidence 36665 8899999999999976666521 000 11123589998843
No 40
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.35 E-value=4 Score=40.62 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=36.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..+|.|.+||+.++ +.|+|.|+|+.=+|+++++..+++
T Consensus 197 ~~kIeVEv~tleea~~a~---~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 197 VKMVEVEVESLAAAEEAA---AAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred CCeEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 368999999999987654 789999999999999999887765
No 41
>PLN02623 pyruvate kinase
Probab=79.01 E-value=5.9 Score=42.95 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=89.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
.|++.+.-|+|-|+|.+-+.. .+++.++++.+. +...|..+..+.+|.+++-++.+..-....|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 578899999999999654432 224444444443 223345667888999999988877766688888
Q ss_pred EEeCCCC-eeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDW-QVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW-~iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
+|--.|- -=||+|.+.+ +....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 8854443 3456655433 33223333442 2333468888999999999999999763
Q ss_pred -HHHHHHHHHhhcc
Q 017770 193 -VKAVLALKEYFDG 205 (366)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777643
No 42
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=78.69 E-value=9.8 Score=37.40 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=68.3
Q ss_pred eCchhHHHHHHHhCCcEEEEcCc-c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc-cCCC
Q 017770 57 TESKQVMTAAVERGWNTFVFLSE-N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-DGQA 133 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~~-~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~-~~~~ 133 (366)
..+.+++.+.-+.|.=+++-... + .++.+++..+... .++++++-+-...+...+.+... ..+.
T Consensus 22 ~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-------------t~~pfgvn~~~~~~~~~~~~~~~~~~~v 88 (307)
T TIGR03151 22 VATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-------------TDKPFGVNIMLLSPFVDELVDLVIEEKV 88 (307)
T ss_pred CCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-------------cCCCcEEeeecCCCCHHHHHHHHHhCCC
Confidence 34688999999999888875321 1 1222333333211 13444544433333332332222 2345
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.+.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|++..
T Consensus 89 ~~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 89 PVVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred CEEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 55655433 3544 88888888889999999999986554 66999999855
No 43
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=78.30 E-value=2.3 Score=41.84 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=37.5
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.++..+. .|.+.++..++..+.+++..|.++++|+. +++.|+|+|++.-
T Consensus 115 ~~v~~~~G----~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG 164 (330)
T PF03060_consen 115 DVVSFGFG----LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQG 164 (330)
T ss_dssp SEEEEESS----SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-
T ss_pred EEEEeecc----cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEec
Confidence 34555443 47688889999999999999999999986 5778999999984
No 44
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=77.67 E-value=6.9 Score=32.65 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=53.3
Q ss_pred ccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe
Q 017770 207 NEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV 286 (366)
Q Consensus 207 ~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~ 286 (366)
.......++..++|.++.|+ +|-+|-- +.=+.+ ||.-+|. =..|. |=|.++-.-.|....
T Consensus 11 ~~~~~p~~i~~G~V~s~~PL----~I~i~~~-liL~~~-----------~L~i~~~-l~~~~--~~~~~~~~~~~~~~~- 70 (100)
T PF10844_consen 11 VEASNPVDIVIGTVVSVPPL----KIKIDQK-LILDKD-----------FLIIPEL-LKDYT--RDITIEHNSETDNIT- 70 (100)
T ss_pred HhcCCCceeEEEEEEecccE----EEEECCe-EEEchH-----------HEEeehh-ccceE--EEEEEecccccccee-
Confidence 35566778899999999993 4444431 111111 2333331 12221 122232222222111
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 287 PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
-.|-..|+.||+|++.-.+|..+-.++.||
T Consensus 71 ----i~~~~~Lk~GD~V~ll~~~~gQ~yiVlDkV 100 (100)
T PF10844_consen 71 ----ITFTDGLKVGDKVLLLRVQGGQKYIVLDKV 100 (100)
T ss_pred ----EEEecCCcCCCEEEEEEecCCCEEEEEEeC
Confidence 678899999999999999999998888875
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.53 E-value=31 Score=32.84 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=71.8
Q ss_pred HHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEE-------------Eec-cCceEEEEee
Q 017770 195 AVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLL-------------VGS-FARGLFLVHS 260 (366)
Q Consensus 195 ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmL-------------VGS-~S~glFLVhs 260 (366)
|-.+|++.+... . ....++..|+|..-.+-+..+.+-||-.+.-.--.||. |+. +|+-+.+.+.
T Consensus 101 en~~L~~lL~~~-~-~~~~~~i~A~Vi~~~~~~~~~~i~Id~G~~~Gv~~g~~Vv~~~GlVG~V~~v~~~~s~V~li~d~ 178 (276)
T PRK13922 101 ENARLRELLNLK-E-SLDYQFITARVISRSPDPWSQQVTIDKGSNDGVKKGMPVIDPGGLVGRVIEVSPNTSRVLLLTDP 178 (276)
T ss_pred HHHHHHHHhcCc-c-cCCCceEEEEEEEeCCCCceeEEEEccCcccCCCCCCceEcCCCCeEEEEEECCCeeEEEEEEcC
Confidence 445566665432 1 12268999999999999999999999877655445544 344 3444444444
Q ss_pred ccccCCCCCCCCeeeecCCceeEEEecCC----ceeee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 017770 261 ECLESNYIASRPFRVNAGPVHAYVLVPGG----KTCYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 321 (366)
Q Consensus 261 Et~es~Yva~RPFRVNAGaVHaYv~~Pgg----kT~YL---SEL~sG~eVLvVd~~G~tR~-a~VGRvK 321 (366)
++. =|.++.--.....+.--|+ .-+|+ .+++.||.|..-+.+|.-=. .+||+|+
T Consensus 179 ~~~-------v~v~i~~~~~~gi~~G~g~~~~l~l~~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~ 240 (276)
T PRK13922 179 NSR-------VPVQVGRNGIRGILSGNGSGDNLKLEFIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVT 240 (276)
T ss_pred CCc-------eEEEEEcCCceEEEEecCCCCceEEEecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 331 2444421112222222121 44566 67999999999998875443 7899886
No 46
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=77.21 E-value=11 Score=37.88 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=68.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchhh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 017770 57 TESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~~~~~~-~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--- 132 (366)
.-+.++...|-|-|.-+++..- +.|. .+...+. +.++..+ ....=.+++|++++......
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvrk~--------------k~~~L~v-~~SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRF-DEESRIPFIKDM--------------QERGLFA-SISVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHHhc--------------cccccEE-EEEcCCCHHHHHHHHHHHhcCCC
Confidence 4579999999999999999872 2222 2221111 1112212 12122467777887776654
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.++++++...=--..+-+.|..+.+.- .-+++. +.+.+.|+.+ ++.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l---~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVREL---ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH---HHcCcCEEEEC
Confidence 499999876444455555555554321 224444 6677766655 57899999877
No 47
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.14 E-value=4.7 Score=39.69 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=44.2
Q ss_pred ehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 147 PlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.+++-|+++... ..+|..+|.+.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 466666665433 36799999999998765 57999999999999999998888763
No 48
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.09 E-value=7.7 Score=35.28 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=68.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017770 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (366)
-++.....+.|++++-+..++ .+..+.+.+...+ |+...+ -+.++++.+.+.. ..+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~i-Pi~~~~---------------~i~~~~~v~~~~~--~Ga 95 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSL-PVLRKD---------------FIIDPYQIYEARA--AGA 95 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCC-CEEECC---------------eecCHHHHHHHHH--cCC
Confidence 578888999999987654322 2222333222111 322221 2456666555543 468
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
+.+++...|...==+++++.++..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 96 d~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 96 DAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 89988777765322355555444446677888899999655 566899999888655
No 49
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.90 E-value=5.3 Score=39.61 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=40.9
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
+++-+.++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 34444444321 25799999999988766 7899999999999999998877765
No 50
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=76.58 E-value=6 Score=41.40 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=81.4
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+|++-+..+++.|+|.|.++. ++++.++.+.+. +...+ ..+..+..|.+++-++.+..-....|-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~-------------l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREV-------------LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 578889999999999999986 334444433332 11112 235677889999888876665544566
Q ss_pred EEEeCCCCee-eehh-------hhhhcccCCCceEEEEc-------C----CHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQV-IPAE-------NIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~i-IPlE-------NliA~~q~~~~~l~a~v-------~----~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
+++-..|-.. +|.| .++.+....+..++... . +-.|+.-+..+.+.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 6664333211 1222 22322222233333322 2 2347777888899999999997663
Q ss_pred --HHHHHHHHHhhcc
Q 017770 193 --VKAVLALKEYFDG 205 (366)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777743
No 51
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=2.1 Score=39.32 Aligned_cols=93 Identities=26% Similarity=0.457 Sum_probs=54.7
Q ss_pred EEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCc-eeEEEecCCce---ee
Q 017770 218 ATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPV-HAYVLVPGGKT---CY 293 (366)
Q Consensus 218 atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaV-HaYv~~PggkT---~Y 293 (366)
.+|..|-. + |.|.|. |+.+.|.|.=+.-.+-+| |.- .+.| -|||=.+-= --|+ -.||. +|
T Consensus 40 GRiRqV~~-~-G~~~~t-----~Ra~DG~~tL~~~Ga~~L-~~~-l~~P-----~~RVvV~~E~e~f~--r~Gk~VFaKf 103 (155)
T COG1370 40 GRIRQVFV-D-GERIAT-----VRANDGLFTLTIEGARRL-HRA-LPFP-----RMRVVVSDEAEEFV--RKGKSVFAKF 103 (155)
T ss_pred CceEEEEE-C-CEEEEE-----EEcCCceEEechhhhHHH-Hhc-CCCC-----ceEEEeccccHHHH--Hhccchhhhh
Confidence 34444432 5 999985 788888887666555554 332 1222 244422210 0011 01221 11
Q ss_pred e----eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceE
Q 017770 294 L----SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (366)
Q Consensus 294 L----SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLl 328 (366)
. .||++|||||+||.+++- .-|||+-+-.+-|.
T Consensus 104 Vi~~D~~iR~~dEvlVVne~d~L--lAvGra~ls~~E~~ 140 (155)
T COG1370 104 VIDVDEEIRAGDEVLVVNEDDEL--LAVGRALLSGAEMR 140 (155)
T ss_pred eeccCcccCCCCeEEEECCCCcE--EEeeeEeecHHHHh
Confidence 1 589999999999999865 88999987766665
No 52
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=76.31 E-value=12 Score=28.72 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
.+.+.++.-.... ....+.++++..-.. .-...++..++. .+..++....+. +......+++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~~-~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELLK-KHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDED-DSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHHH-HSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESST-SHHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHhc-ccCceEEEEEeeecc-ccccccccccccccccccEEEecCCC-CHHHHHHHHHCCCCEEEECCCCH
Confidence 4466666444332 245788888754333 333344444333 456777777444 45667778899999999999999
Q ss_pred HHHHH
Q 017770 194 KAVLA 198 (366)
Q Consensus 194 ~ev~~ 198 (366)
+++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 53
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.99 E-value=5.1 Score=39.62 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=37.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++...++.
T Consensus 194 ~kIeVEv~slee~~ea---~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 194 THVEVEVDRLDQIEPV---LAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred CcEEEEeCCHHHHHHH---HhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 5799999999999876 47899999999999999998887763
No 54
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=75.50 E-value=4.8 Score=27.64 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 53 VWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 53 vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
|-+|+ ++.+.++.++..|+|+|+.+
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SEEEES
T ss_pred eEEecCCCHHHHHHHHHcCCCEeeCC
Confidence 56778 57889999999999999864
No 55
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=75.28 E-value=5.7 Score=39.29 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
..+|..++.+.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999998865 68999999999999999999888763
No 56
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=74.91 E-value=40 Score=30.79 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=65.7
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vv 137 (366)
++++.++.+.|+.++.+.. +..+.+++...+-.+.... +|.. +..+ + +. ..++.+.+.. ..++.++
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~-~d~~-----~~~~--~--~~~~~~~v~~a~~--aGad~I~ 93 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIK-RDYP-----DSEV--Y--ITPTLKEVDALAA--AGADIIA 93 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEe-cCCC-----CCCc--e--ECCCHHHHHHHHH--cCCCEEE
Confidence 7788888999999988754 1223333333332221111 1100 1111 1 11 2344433333 3567787
Q ss_pred EeCCC---CeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 138 IDLPD---WQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 138 v~~~D---W~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
++... ..-..++.++..++. .+-.+++.+.+.+|++ .+.+.|+|-+.+.
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEcC
Confidence 74332 111456678888877 6778999999999985 5678899988763
No 57
>PLN02461 Probable pyruvate kinase
Probab=74.79 E-value=8.5 Score=41.10 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=90.6
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.||+.+ .-|++-|+|.+-... .+++.++++.++ +...|+.+..+.+|.+++.++.+..-...+|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 477887 789999999655442 224444444444 22335566788899999999998888888999
Q ss_pred EEEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|--.|=- =||+|.+-. .....+.-+|. ...+-.|+--.+.+..-|+|||+|.-+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 999665644 377776532 22222223332 1345578888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+.+.+++.
T Consensus 341 yPveaV~~m~~I~~ 354 (511)
T PLN02461 341 YPELAVKTMARICR 354 (511)
T ss_pred CHHHHHHHHHHHHH
Confidence 366777777764
No 58
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=74.75 E-value=18 Score=34.12 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCeeeec---CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 271 RPFRVNA---GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 271 RPFRVNA---GaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|||.++. |.+.=+|..-|.-|.||..|+.||+|.+-...|+.- ... ....||+++|=+=
T Consensus 49 ~pySi~~~~~~~~~~~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f--~~~--~~~~~~~llIAgG 110 (263)
T PRK08221 49 APISVSDYGDGYIDLTIRRVGKVTDEIFNLKEGDKLFLRGPYGNGF--PVD--TYKGKELIVVAGG 110 (263)
T ss_pred ceeeccCCCCCEEEEEEEeCCchhhHHHhCCCCCEEEEECCCCCCc--ccC--ccCCccEEEEccc
Confidence 7777765 334444555577899999999999999988888621 111 1235799888543
No 59
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.54 E-value=6.3 Score=39.31 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=36.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5799999999998765 6899999999999999998877765
No 60
>PRK06739 pyruvate kinase; Validated
Probab=74.10 E-value=10 Score=38.60 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=89.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+|++.+.-|++.|+|.|-... .+++.+.++.++ +.+. +..+..+.+|.+++.++.+..-...+|-
T Consensus 166 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF-------------IQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 588899999999999765442 224444544444 1222 2345578899999999988887778899
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlENli-------A~~q~~~~~l~-a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|--.|-- -||+|.+- ......+.-+| | ...+-.|+--.+.+..-|+|||+|.-+.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 999665644 37777653 22222222233 2 2345578888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
++.|+-+.+++.
T Consensus 313 yPveaV~~m~~I~~ 326 (352)
T PRK06739 313 HPIESVSTLRLVSE 326 (352)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 61
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=74.07 E-value=14 Score=37.50 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=61.4
Q ss_pred CchhHHHHHHHh---CCcEEEEcCcchhhhhhccceeeeeeeeecC-CccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017770 58 ESKQVMTAAVER---GWNTFVFLSENQQLAIDWSTIALLDPLFIKE-GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (366)
Q Consensus 58 ~~K~~vT~ALEs---G~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~-g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (366)
+..+.+.+|=+- |+..+.+..+|...++.+..++-+ .+.- +..+. .|+ -|.+|+.++.+....
T Consensus 182 d~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~---avmPl~~pIG-sg~------gv~~p~~i~~~~e~~--- 248 (326)
T PRK11840 182 DMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAV---AVMPLGAPIG-SGL------GIQNPYTIRLIVEGA--- 248 (326)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCE---EEeecccccc-CCC------CCCCHHHHHHHHHcC---
Confidence 356778888777 888877777777777776666432 1211 22222 232 245777766655431
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHHH
Q 017770 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVLA 198 (366)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev~~ 198 (366)
+ +| .=+=|...+++||.. ++|.|+|||++.+ +||-...+
T Consensus 249 ~-----------vp------------VivdAGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~Ma~ 292 (326)
T PRK11840 249 T-----------VP------------VLVDAGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLMAR 292 (326)
T ss_pred C-----------Cc------------EEEeCCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHHHH
Confidence 0 11 112355678888765 5789999999876 67755433
No 62
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.32 E-value=57 Score=28.95 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=56.7
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeC
Q 017770 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL 140 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~ 140 (366)
+-+..|++.|+|.+.++.++.. ...+.. +.+.+..++.. +.+.++..++. ...+|++.+..
T Consensus 72 ~~~~~a~~~gad~vh~~~~~~~-~~~~~~--------------~~~~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~~~ 132 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDDLP-VADARA--------------LLGPDAIIGLS--THTLEEAAAAL--AAGADYVGVGP 132 (212)
T ss_pred ChHHHHHHcCCCEEecCcccCC-HHHHHH--------------HcCCCCEEEEe--CCCHHHHHHHh--HcCCCEEEECC
Confidence 4567788888888877654211 011111 11234445544 34655544433 24689998732
Q ss_pred CCCee-----ee---hhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEE-----ecCCHH
Q 017770 141 PDWQV-----IP---AENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDVK 194 (366)
Q Consensus 141 ~DW~i-----IP---lENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~~ 194 (366)
-..+. .| ++.+-.-.+..+ ..|++.-. .. .+.+-.+++.|+|||++ ..+|+.
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GG-I~-~~~i~~~~~~Ga~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGG-IT-PENAPEVLEAGADGVAVVSAITGAEDPE 198 (212)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECC-cC-HHHHHHHHHcCCCEEEEeHHhhcCCCHH
Confidence 22211 11 233322111112 45555422 21 35566888999999997 455654
No 63
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=72.85 E-value=45 Score=30.46 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=61.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---ch----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~---~~----~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
.+.+.+..+++.|++.+++... +. +.+++++.-..+-.+-+.+|+..- +|..-. .-.++.++.+....
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~~~~~~~- 156 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEELAKRLEE- 156 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHHHHHHHHh-
Confidence 5889999999999999998742 22 333344321122223334443211 111000 00233333222222
Q ss_pred CCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 131 GQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 131 ~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..++.+++...+ -.-+-++ ++.++ +..+..+++ .+.+.+|++.++ +.|+|||++.+.
T Consensus 157 ~g~~~ii~~~~~~~g~~~g~~~~-~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~a 220 (230)
T TIGR00007 157 LGLEGIIYTDISRDGTLSGPNFE-LTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGKA 220 (230)
T ss_pred CCCCEEEEEeecCCCCcCCCCHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeHH
Confidence 235656643221 0111222 22222 222334444 378999998765 489999998653
No 64
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=72.43 E-value=8 Score=38.10 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.4
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
+++.+.++... ..+|..++.+.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 45555544332 46799999999998865 68999999999999999998887763
No 65
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=72.05 E-value=4.7 Score=37.36 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEe
Q 017770 269 ASRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334 (366)
Q Consensus 269 a~RPFRVNAG---aVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~ 334 (366)
..|||-+... -++=.|..-|.-|+||.+++.||+|.+....|+.= ..-. +.+|+++|=+-.
T Consensus 49 ~~r~ySi~s~~~~~l~l~Vk~~G~~t~~l~~l~~G~~v~i~gP~G~~f--~l~~---~~~~~vlIagG~ 112 (250)
T PRK00054 49 LERPISISDIDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGF--DLEE---IGGKVLLVGGGI 112 (250)
T ss_pred CceeeEEeeeCCCEEEEEEEEcChHHHHHhcCCCCCEEEEEcccCCCC--CCCC---CCCeEEEEeccc
Confidence 3678777544 45566666788899999999999999999888731 1111 568998886543
No 66
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.65 E-value=14 Score=35.50 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=78.9
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 017770 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (366)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~vv~~~------~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (366)
.|+-. +-.++.....+.|++++-+..| +.+..+...+.-.+ |+..+| -|.++-+.+
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~i-Pvl~kd---------------fi~~~~qi~ 127 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSL-PVLRKD---------------FIIDPYQIY 127 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCC-CEEeee---------------ecCCHHHHH
Confidence 45543 2478888889999999776332 23333333332111 322111 246666655
Q ss_pred hhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
++.. ..+|.+.+...+...--++.++...+.-+-.+++++.|.+|++.+ ++.|+|=|-+.+.|
T Consensus 128 ~a~~--~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A---~~~gadiIgin~rd 190 (260)
T PRK00278 128 EARA--AGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERA---LKLGAPLIGINNRN 190 (260)
T ss_pred HHHH--cCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEECCCC
Confidence 5443 468889888887654458889988888888999999999999774 47799988887644
No 67
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=71.19 E-value=10 Score=40.01 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=87.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+.-|++-|+|.+-+.. .+++.++++..+ +...|..+..+.+|.+++.++.+..-....|-+
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~-------------l~~~~~~~~iiakIEt~~av~nldeI~~~~DgI 241 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREV-------------LGEKGKDIKIIAKIENQEGVNNFDEILEASDGI 241 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcCEE
Confidence 578899999999999766542 234445544443 122244566888999999888877766668888
Q ss_pred EEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
++-..|=. =+|.|.+.+ .....+.-++. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 242 mIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 242 MVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred EECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 88544433 246666543 22222222332 1345578888889999999999996653
Q ss_pred -HHHHHHHHHhhcc
Q 017770 193 -VKAVLALKEYFDG 205 (366)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 322 PveaV~~m~~I~~~ 335 (480)
T cd00288 322 PVEAVKAMARICLE 335 (480)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777643
No 68
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.00 E-value=9.1 Score=37.86 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=36.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|-.++.|.+||+.+ ++.|+|.|+|++-+++++++..+.+
T Consensus 196 ~~~I~VEv~tleea~eA---~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 196 PLTIEVETETLEQVQEA---LEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred CCEEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35799999999999865 4899999999999999998877765
No 69
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.84 E-value=42 Score=32.10 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=55.5
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-
Q 017770 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD- 130 (366)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~- 130 (366)
-.|++..+..++..+..+|+|.++++-||.- .+.+++..+....
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~-----------------------------------~~~~~~~~~~~a~~ 59 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAP-----------------------------------NDVRTILSQLQALA 59 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCC-----------------------------------CCHHHHHHHHHHHH
Confidence 3899888999999999999999999887631 0112222211111
Q ss_pred CCCCeEEEe--CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc
Q 017770 131 GQAENIVID--LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ 181 (366)
Q Consensus 131 ~~~~~vvv~--~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~ 181 (366)
...-.++|. ..|.. .+..++.. +..+=++-.++|+|||+.+...+..
T Consensus 60 ~~g~~~~VRv~~~~~~--~i~~~Ld~--Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 60 PYPSSPVVRPAIGDPV--LIKQLLDI--GAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred hcCCCcEEECCCCCHH--HHHHHhCC--CCCEEEecCcCCHHHHHHHHHHcCC
Confidence 001122222 12221 23333332 4566788999999999999999884
No 70
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=70.11 E-value=43 Score=31.22 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=29.0
Q ss_pred Eec-CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccceEEEEEE
Q 017770 285 LVP-GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 285 ~~P-ggkT~YLSEL~sG~eVLvVd~~-G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
..| |.-|.||..|+.||+|.+...- |... ... .-+.+|++||=+=
T Consensus 69 ~~~~G~~S~~L~~l~~Gd~v~i~gp~~g~f~---l~~-~~~~~~~vlIagG 115 (248)
T PRK10926 69 TVPEGKLSPRLAALKPGDEVQVVSEAAGFFV---LDE-VPDCETLWMLATG 115 (248)
T ss_pred EeCCCCcChHHHhCCCCCEEEEecCCCcceE---ccC-CCCCCeEEEEEee
Confidence 345 4467899999999999998743 4331 110 1134788888554
No 71
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=69.77 E-value=6.1 Score=34.62 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.1
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017770 289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (366)
Q Consensus 289 gkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvK 321 (366)
+--+.|.+|+.||+|.+.+.+|++.+=.|-+++
T Consensus 65 ~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~~ 97 (144)
T cd05829 65 AVFFRLGDLRKGDKVEVTRADGQTATFRVDRVE 97 (144)
T ss_pred hhhcchhcCCCCCEEEEEECCCCEEEEEEeEEE
Confidence 445679999999999999999998777776654
No 72
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=69.68 E-value=20 Score=29.34 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=37.1
Q ss_pred EEEecCCceeeeeeccC--CCeEEEEcCCCCeeEEeeeeE-EE-eccceEEEEEEe
Q 017770 283 YVLVPGGKTCYLSELKS--GKEVIVVDQKGRQRTAVVGRV-KI-ESRPLILVEAKA 334 (366)
Q Consensus 283 Yv~~PggkT~YLSEL~s--G~eVLvVd~~G~tR~a~VGRv-KI-E~RPLlLIeAe~ 334 (366)
=|.+++++..-+.||.. |++|+..|..|+.+...|-.+ +- ...|++.|..+.
T Consensus 7 ~V~~~d~~~~~i~~l~~~~g~~V~~~d~~~~~~~~~v~~~~~~~~~~~~~~i~~~~ 62 (136)
T cd00081 7 LVLLEDGGRKKIEELVEKKGDKVLALDETGKLVFSKVLKVLRRDYEKKFYKIKTES 62 (136)
T ss_pred EEEeccCcEEEhHHhhhccCCEEEEECCCCCEEEEEeeEEEEEcCCCcEEEEEECC
Confidence 46788788899999999 999999999776654433222 12 456777666654
No 73
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=69.18 E-value=44 Score=31.17 Aligned_cols=122 Identities=19% Similarity=0.174 Sum_probs=73.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.++++.|+..+=++-.+.+-.+.+..+..--+ ++-+.--..|.++++.+.+.. ..+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~------------~~~~iGaGTV~~~~~~~~a~~--aGA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG------------DRALIGAGTVLSPEQVDRLAD--AGGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC------------CCcEEeEEecCCHHHHHHHHH--cCCCEEEC
Confidence 3678899999999987776443322222332211000 111222347789998776654 35788887
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~~~ 203 (366)
-..|- .++...+..+.-++..+.|++|++. +.+.|+|-|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~---A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFA---ALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHH---HHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44443 2333334445567888999999755 55789999988443 355666665554
No 74
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=69.10 E-value=14 Score=38.88 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=70.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
+.++.+.+.+|.|+|.+.++..|-.....|..|..+...+ + +..+++ ..|.++++...+.. ..+|.+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-------~--~~~v~a-G~V~t~~~a~~~~~--aGad~I~ 308 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-------P--HVDIIA-GNVVTADQAKNLID--AGADGLR 308 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-------C--CceEEE-CCcCCHHHHHHHHH--cCCCEEE
Confidence 5689999999999999998863211111122222221100 0 122222 36788888666654 3577776
Q ss_pred Ee-C----------CC---CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ID-L----------PD---WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~-~----------~D---W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+. . .+ +++-.+.++...++..+..+|+ .+.+..|+-. +|..|+|+|++-+-
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred ECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 52 1 12 2333334454444445678999 8899988754 56799999998765
No 75
>PF13403 Hint_2: Hint domain
Probab=68.76 E-value=13 Score=32.92 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=39.4
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE--------eccceEEEEEEe
Q 017770 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI--------ESRPLILVEAKA 334 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKI--------E~RPLlLIeAe~ 334 (366)
+.|..|.| -+-.++|+.||+|+..| .|-....-|||.++ +.-.++.|.|-+
T Consensus 7 T~I~T~~G-~~~Ve~L~~GD~V~T~d-gg~~~V~wig~~~~~~~~~~~~~~~~pvri~a~a 65 (147)
T PF13403_consen 7 TLIETPDG-PRPVEDLRPGDRVLTRD-GGFQPVRWIGRRTVSPADLPAPPRLAPVRIPAGA 65 (147)
T ss_pred CEEecCCc-CeEeeccCCCCEEEecC-CCEEEEEEEEEEEecccccCcCCCcceEEEECCc
Confidence 46778888 78899999999999988 34556778999998 344556777766
No 76
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=68.39 E-value=35 Score=30.62 Aligned_cols=58 Identities=26% Similarity=0.442 Sum_probs=36.4
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 270 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 270 ~RPFRVN-----AGaVHaYv~~-Pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.|||-+- .|-+.=+|.. ++| -|.||.. |+.||.|.+...-|..- .- ....+|+++|=+
T Consensus 50 ~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~~~l~~Gd~v~i~gP~G~~~--~~---~~~~~~~vliag 115 (235)
T cd06217 50 QRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVGDLLEVRGPIGTFT--WN---PLHGDPVVLLAG 115 (235)
T ss_pred eeeecccCCCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEeCCceeeE--eC---CCCCceEEEEec
Confidence 4666553 2334444433 444 5899975 99999999998888641 11 124588888743
No 77
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=68.23 E-value=23 Score=34.91 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=58.8
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----cee
Q 017770 213 LSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHA 282 (366)
Q Consensus 213 l~L~~atVt~V~~vGmGD-RVCVDtc-----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGa----VHa 282 (366)
-...+++|++++.++-.- ++.+..- --++||+=+-|. -+....++...|||-+.--| .-=
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~----------~~~~~~~~~~~R~ySias~p~~~~l~~ 221 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVR----------LDPEGEEYQEIRQYSLSDAPNGKYYRI 221 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEE----------EecCCccccceeEEEeeeCCCCCeEEE
Confidence 346678999999876442 2333321 123444432221 11111234445888875433 222
Q ss_pred EEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 283 YVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 283 Yv~~-Pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.|.. |+| -|.||.. |+.||+|.+-...|+-.. -+ -+.||+++|=+
T Consensus 222 ~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~~--~~~~~~vlIag 269 (399)
T PRK13289 222 SVKREAGGKVSNYLHDHVNVGDVLELAAPAGDFFL---DV--ASDTPVVLISG 269 (399)
T ss_pred EEEECCCCeehHHHhhcCCCCCEEEEEcCcccccc---CC--CCCCcEEEEec
Confidence 3333 445 4899965 999999999888887421 11 13589888743
No 78
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=67.78 E-value=20 Score=30.86 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+.+..+++.|++.+.++..+.........+..+..+ .+.-|.. . -+.+ +.+.+ .. .+++.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~-------~~~~~~~--l--~~~~--~~~~a-~~-~g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALREL-------CRKYGVP--L--IIND--RVDLA-LA-VGADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHhCCe--E--EEeC--hHHHH-HH-cCCCEEecC
Confidence 6788999999999998875432222111111111110 0111211 1 1222 22322 22 244555554
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..+.. .+ .+..+.+.+..+-..+.+.+|++ .+++.|+|.|++.
T Consensus 80 ~~~~~---~~-~~~~~~~~~~~~g~~~~t~~~~~---~~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VA-EARALLGPDLIIGVSTHSLEEAL---RAEELGADYVGFG 122 (196)
T ss_pred cccCC---HH-HHHHHcCCCCEEEeeCCCHHHHH---HHhhcCCCEEEEC
Confidence 43432 22 22233334556777788887765 4567899999885
No 79
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=67.59 E-value=3.2 Score=35.67 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhhcccCeEEE---ecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 017770 168 TPSEAQIFLEALEQGLGGIVL---KVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (366)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl---~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (366)
|.-+.++...+|.+|.||++- +..=-+. +|+..... .++..+.+.||||..+
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~---IKe~~~E~-s~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREA---IKEMLSEY-SDKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHh-ccccceeecCceEEee
Confidence 899999999999999999872 2221222 33344332 2567899999999875
No 80
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.58 E-value=16 Score=32.44 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
...+.+..+.+.|+|++++..+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccC
Confidence 3456788888999999998865
No 81
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=66.95 E-value=15 Score=36.48 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=64.4
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--hh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSEN--QQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~--~~-~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
+.+.++.+.+.+|.|++.|.++..+ .+ ..+.+..+..-.| +..+. ...+.++++...+.. ..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p------------~v~Vi-~G~v~t~~~A~~l~~--aG 156 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP------------NVDVI-AGNVVTAEAARDLID--AG 156 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCC------------CceEE-ECCCCCHHHHHHHHh--cC
Confidence 3467899999999999998876422 11 1111111111000 11111 136677777555543 46
Q ss_pred CCeEEEeC-----------CCCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 133 AENIVIDL-----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 133 ~~~vvv~~-----------~DW~---iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+|.+++.. .+|- .-.+.++...+...+..||+ .+.+..++.. +|+.|+|||++-+.
T Consensus 157 aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~k---Ala~GA~~VmiGt~ 228 (325)
T cd00381 157 ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVK---ALAAGADAVMLGSL 228 (325)
T ss_pred CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH---HHHcCCCEEEecch
Confidence 78887721 0121 11223333333333456887 6677766655 45689999998654
No 82
>PLN02765 pyruvate kinase
Probab=66.77 E-value=5.5 Score=42.68 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=88.0
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
.||+.+ .-|++-|+|.|-... .+++.+.++.++ +++.|. .+..+.+|.+++-++.+..-....|
T Consensus 207 kD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sD 273 (526)
T PLN02765 207 KDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEAD 273 (526)
T ss_pred hHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 577777 689999999554332 224444444443 222232 5568889999999998888878889
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
-++|--.|--+ ||+|.+-. .....+.-+|+ ...+-.|+--.+.+.--|+|+|+|.-+.
T Consensus 274 gIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~ 353 (526)
T PLN02765 274 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL 353 (526)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC
Confidence 99996666543 77777533 22222223443 1234477888888999999999999543
Q ss_pred --HHHHHHHHHhhcc
Q 017770 193 --VKAVLALKEYFDG 205 (366)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 354 yPveaV~~m~~I~~~ 368 (526)
T PLN02765 354 YPVETISTVGRICAE 368 (526)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777643
No 83
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=66.57 E-value=3.1 Score=42.50 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceee--eee--eeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDP--LFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~--i~~--l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
.+++|.-|=..|+-++++.-+..-+.+..+++.- ..| |.+ .+-++..- ...++. ...+...
T Consensus 136 t~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~l-----knfe~~~~-----~~v~~~-----~~sg~~~ 200 (363)
T KOG0538|consen 136 TEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTL-----KNFEGLKL-----TEVEEA-----GDSGLAA 200 (363)
T ss_pred HHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCccccc-----cccccccc-----ccCCcc-----cchhhhh
Confidence 6899999999999999988766556655555422 111 111 11111110 011110 0111111
Q ss_pred eEEE---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 135 NIVI---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 135 ~vvv---~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
|+.. ...+|+=|+.=.=+-.+ --|+..+-+.|||+.| .|+|++||++..-
T Consensus 201 ~~~~~id~Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNH 253 (363)
T KOG0538|consen 201 YVSSQIDPSLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNH 253 (363)
T ss_pred hhhcCCCCCCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCC
Confidence 2211 13489887653322221 2467788888998875 6899999998754
No 84
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=66.32 E-value=9.1 Score=34.16 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCeeee----cCCceeEEEe-c--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 270 SRPFRVN----AGPVHAYVLV-P--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 270 ~RPFRVN----AGaVHaYv~~-P--ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.|||-+- .|-+.=.|.. | |+-|+||..|+.||+|.+-...|+... .+|+++|=
T Consensus 47 ~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l~~G~~v~i~gP~G~~~~---------~~~~vlia 106 (218)
T cd06196 47 KRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWGAIEY---------KGPGVFIA 106 (218)
T ss_pred ccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhCCCCCEEEEECCccceEe---------cCceEEEe
Confidence 4555552 2434444544 3 456999999999999999999997531 36777764
No 85
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=66.16 E-value=31 Score=35.22 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCCeeeehhhhhhcccCCCceEEEEcCCHHH---HHHHHHHh--hcccCeEEEecCCHHHHHHHHHhhcccccccceeee
Q 017770 141 PDWQVIPAENIVASFQGSGKTVFAISKTPSE---AQIFLEAL--EQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSL 215 (366)
Q Consensus 141 ~DW~iIPlENliA~~q~~~~~l~a~v~~~~e---A~~al~~L--E~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L 215 (366)
-.|.-.|.+.-.|.++..... -+... .++ ....+.+- ..|+.|-.+.|-+... -++..-+ -...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~--- 142 (411)
T TIGR03224 74 LTWDELPEEVTLPEAAAEPAA-AAGQD-DEEPSRGSKSSGVQEVEAAQHGSTRAPWSAAH-----PYVNLYG-VKAP--- 142 (411)
T ss_pred eccccCCCcCChhhhhhCCcc-ccccC-ccccccchhhhhhhhhccccCCCCCCCccccC-----Ccccccc-CCCC---
Confidence 489999988888766544221 11111 122 23333334 6777777777764332 1221111 1111
Q ss_pred eEEEEEEEEEcCC---cceEE---EeecC---CCCCCceEEEeccCceEEEEeeccc--cCCCCCCCCeeeecCC-----
Q 017770 216 MKATVTRVDVAGM---GDRVC---VDLCS---LMRPGEGLLVGSFARGLFLVHSECL--ESNYIASRPFRVNAGP----- 279 (366)
Q Consensus 216 ~~atVt~V~~vGm---GDRVC---VDtcS---ll~~GEGmLVGS~S~glFLVhsEt~--es~Yva~RPFRVNAGa----- 279 (366)
..|+|+.++.++- .+.|. +|.-. -+.||+=+.| .+ .-+. ..|+ -.|||-+---+
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l--------~~-pg~~~~g~~~-~~R~YSIas~~~~~~~ 212 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGI--------LP-PGTDASGKPH-YARMYSVASPRNGERP 212 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEE--------ec-CCcCcCCCcC-cceeeeecCCCCccCC
Confidence 3489999988842 33443 44322 1344443222 11 1111 1122 24666653211
Q ss_pred ----c-eeEEEec---------CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 280 ----V-HAYVLVP---------GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 280 ----V-HaYv~~P---------ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
+ ..|-.+| |--|+||.+|+.||+|.+....|+.-... .-..+|++||=
T Consensus 213 ~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp----~~~~~~lllIa 274 (411)
T TIGR03224 213 GYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMP----NHPESSIMMIC 274 (411)
T ss_pred CCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCC----CCCCCCEEEEe
Confidence 1 2333444 55799999999999999999999742211 12257888874
No 86
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=66.08 E-value=13 Score=37.19 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|..+|.|.+||+. +++.|+|.|+|+.=++++++++.+.+
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999875 56899999999999999998877754
No 87
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=65.61 E-value=26 Score=34.49 Aligned_cols=109 Identities=9% Similarity=0.090 Sum_probs=60.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
.++.+..++|.|++.|.+...+. +.++.+. ..|.. ++..|.+.++...+.. ..+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK-----------------ENGVK--VIPVVASVALAKRMEK--AGADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----------------HcCCE--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 46788889999999888754322 1222222 22322 3456778776544443 3688898
Q ss_pred EeCCCCe----eeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 IDLPDWQ----VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~~~DW~----iIPlENliA~~q~~-~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+...+.. -.|.-.++.++... +..|++. +.|.++ +..+|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG---MAAAFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH---HHHHHHcCCCEeecchH
Confidence 8654111 22333343333211 2345543 455555 55555689999998763
No 88
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=64.74 E-value=48 Score=26.55 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=60.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
+.++..-.+.|++-++++.+ .+.++++..- |- -..+...++++.++++-. .+++.+++.
T Consensus 11 ~~i~~~L~~~~~~vvvid~d-~~~~~~~~~~-----------------~~-~~i~gd~~~~~~l~~a~i--~~a~~vv~~ 69 (116)
T PF02254_consen 11 REIAEQLKEGGIDVVVIDRD-PERVEELREE-----------------GV-EVIYGDATDPEVLERAGI--EKADAVVIL 69 (116)
T ss_dssp HHHHHHHHHTTSEEEEEESS-HHHHHHHHHT-----------------TS-EEEES-TTSHHHHHHTTG--GCESEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECC-cHHHHHHHhc-----------------cc-ccccccchhhhHHhhcCc--cccCEEEEc
Confidence 44555555555566666654 3344433322 11 123444567777666644 467788887
Q ss_pred CCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 140 ~~DW~iIPlENliA~~----q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
..|. -+|+.+.. .....++++.+.+.++++.+-. .|+|-|+.
T Consensus 70 ~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi~ 115 (116)
T PF02254_consen 70 TDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVIS 115 (116)
T ss_dssp SSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEEE
T ss_pred cCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEEC
Confidence 6655 56654421 1335799999999999888744 89998875
No 89
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=64.55 E-value=10 Score=35.77 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 270 SRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 270 ~RPFRVNAG---aVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|||.+... -..=+|..-|..|.||..|+.||+|.+-...|+.- ..-+ ...||+++|=+-
T Consensus 46 ~~pySi~~~~~~~l~~~Vk~~G~~S~~L~~l~~Gd~v~i~gP~G~~f--~~~~--~~~~~~llIAgG 108 (261)
T TIGR02911 46 EAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGF--DVDN--YKHKELVVVAGG 108 (261)
T ss_pred ccceecCCCCCCeEEEEEEeCchhhHHHHcCCCCCEEEEecCCCCCc--ccCc--cCCceEEEEecc
Confidence 377777553 24445555688899999999999999988888731 1111 135898887543
No 90
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=63.52 E-value=7.1 Score=37.22 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=39.0
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEE-EEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVI-VVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~PggkT~YLSEL~sG~eVL-vVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.|||-+-. |-+-=++..-|.-|+||++|+.||+|+ +...-|+.-.. . +.+|+++|=
T Consensus 44 ~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~-----~-~~~~~llIa 105 (281)
T PRK06222 44 RIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGDSILDVVGPLGKPSEI-----E-KFGTVVCVG 105 (281)
T ss_pred ceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCCEEeeEEcCCCCCccc-----C-CCCeEEEEe
Confidence 46777632 223444555688999999999999995 99999985321 1 246888764
No 91
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=63.41 E-value=16 Score=36.83 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhh------cccCeEEEecC---------CHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALE------QGLGGIVLKVE---------DVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE------~G~DGVvl~~~---------d~~ev~~l~~~~ 203 (366)
.+|..+|.|.+||+.++ + .|+|.|+|+.= +++++++..+.+
T Consensus 204 ~kIeVEv~tleea~ea~---~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVL---EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHH---HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 57999999999998765 6 79999999999 999888876655
No 92
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=63.40 E-value=28 Score=36.00 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=71.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
++.+.+.+.+|.|+|.|.++.-|......+..|..|..-+ + +..+. ...|.++++...+.. ..+|.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-------~--~~~vi-~G~v~t~~~a~~l~~--aGad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-------P--DLDII-AGNVATAEQAKALID--AGADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-------C--CCCEE-EEeCCCHHHHHHHHH--hCCCEEE
Confidence 4578888999999999999874321112222222222100 0 12222 247888888666654 3567775
Q ss_pred Ee-C----------CCCee---eehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ID-L----------PDWQV---IPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~-~----------~DW~i---IPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+. . .+|-+ =.+.++...++..+..||+ .+++..|+..+ |+.|+|.|++-+-
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~~ 358 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGSL 358 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECch
Confidence 43 1 13433 3334444445555678999 89999998665 5679999998653
No 93
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=62.90 E-value=57 Score=30.07 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=45.5
Q ss_pred cCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 130 ~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
....|.++++-.-+..=.+|-+=.=.+....-=+......++.....++|+.|++|.+++..+++++.+.
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~a 113 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEA 113 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3567888887666654444432211112222234445566777888999999999999999999876543
No 94
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=62.33 E-value=66 Score=35.76 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=70.1
Q ss_pred chhHHHHHHHhCCcEEEEcCc---c---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSE---N---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~---~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
++-.|-.|-..|+|+|+.--. + .++.+.-.++ |- -.+++|-+.+|++.+... .
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-----------------Gm--e~LvEvh~~~el~~a~~~--g 180 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHEL-----------------GM--TVLVETHTREEIERAIAA--G 180 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHc-----------------CC--eEEEEeCCHHHHHHHHhC--C
Confidence 466778888999999875431 0 1122211222 32 278899999999886653 5
Q ss_pred CCeEEEeCCCCe--eeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHH
Q 017770 133 AENIVIDLPDWQ--VIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLAL 199 (366)
Q Consensus 133 ~~~vvv~~~DW~--iIPlE---NliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~e-v~~l 199 (366)
++.+=|+-+|-+ .|-++ .|...+.. +.-+++ .+++++|++.+. +.|+||||+- .+||.. +++|
T Consensus 181 a~iiGINnRdL~tf~vd~~~t~~L~~~ip~-~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l 256 (695)
T PRK13802 181 AKVIGINARNLKDLKVDVNKYNELAADLPD-DVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERL 256 (695)
T ss_pred CCEEEEeCCCCccceeCHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHH
Confidence 677778887655 23333 33333321 222333 356778887765 6999999974 466643 4444
Q ss_pred H
Q 017770 200 K 200 (366)
Q Consensus 200 ~ 200 (366)
.
T Consensus 257 ~ 257 (695)
T PRK13802 257 V 257 (695)
T ss_pred H
Confidence 3
No 95
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=62.25 E-value=8 Score=35.43 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 269 ASRPFRVN-----AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 269 a~RPFRVN-----AGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
..|||-+= .|-+.=.+..-|..|+||..++.||+|.+...-|+.-. . -+ +.+|+++|=+
T Consensus 42 ~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~gP~G~~~~--~--~~-~~~~~lliag 105 (243)
T cd06192 42 ERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPLGNGFE--G--PK-KGGTVLLVAG 105 (243)
T ss_pred eeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEEccCCCCCc--c--CC-CCCEEEEEeC
Confidence 35777762 23344455556888999999999999999999886421 1 01 3678888743
No 96
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=61.81 E-value=33 Score=32.49 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHHHhCCcEEEEcCc-----chhhhhhccceeeee-----eeeecCCccccCCCCeeEEEEEecChhhhhhhccc--
Q 017770 62 VMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLD-----PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-- 129 (366)
Q Consensus 62 ~vT~ALEsG~~~~vv~~~-----~~~~~~~l~~i~~i~-----~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~-- 129 (366)
.+..|++.|++.+-+... +.+..++...+..++ |+++. ...+|..++. .+++...+++..
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~----~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM----MYPRGPHIDD----RDPELVAHAARLGA 166 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE----EeccCccccc----ccHHHHHHHHHHHH
Confidence 477899999998666432 123333333332221 22220 0122322221 234444443222
Q ss_pred cCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEE-----ecCCH-HHHHH
Q 017770 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVL-----KVEDV-KAVLA 198 (366)
Q Consensus 130 ~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a--~v~--~~~eA~~-al~~LE~G~DGVvl-----~~~d~-~ev~~ 198 (366)
...+||+-..+. ..+|.+-...+..+..|++ ..+ |.+++.. +-++++.|++|+.+ ..+|| ..+++
T Consensus 167 ~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 246888887543 2444443332223344444 455 5666644 45788999999975 44565 44555
Q ss_pred HHHhhc
Q 017770 199 LKEYFD 204 (366)
Q Consensus 199 l~~~~~ 204 (366)
++.++.
T Consensus 243 l~~~i~ 248 (258)
T TIGR01949 243 VCKIVH 248 (258)
T ss_pred HHHHHh
Confidence 666654
No 97
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=61.73 E-value=1.2e+02 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.3
Q ss_pred HHHHHHHhCCcEEEEcCc
Q 017770 62 VMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 62 ~vT~ALEsG~~~~vv~~~ 79 (366)
.+..+.+.|+|.+.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 588899999999987765
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.31 E-value=31 Score=32.46 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=59.3
Q ss_pred CchhHHHHHHHhCCcEEEEcC---cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 133 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~---~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~ 133 (366)
.-.+.+..+.+.|+|+++++. |..+...++-+ .+++.|.+.+..+.-.+ .+.++.+... .
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~-------------~~~~~Gl~~~~~v~p~T~~e~l~~~~~~---~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE-------------IIKNKGLKPVFFTSPKFPDLLIHRLSKL---S 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH-------------HHHHcCCCEEEEECCCCCHHHHHHHHHh---C
Confidence 445668999999999999973 21111111111 12344555555544444 4444554433 3
Q ss_pred CeEE-Ee---CCCCeeeeh-hhhhhcccCCC--ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 134 ENIV-ID---LPDWQVIPA-ENIVASFQGSG--KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 134 ~~vv-v~---~~DW~iIPl-ENliA~~q~~~--~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+.++ +. ..+.+.+|- .+.+..+.... ..|+ ..+++.++++ .+++.|+||+|+-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 4333 31 123343322 33444433221 1233 2355666665 556899999998763
No 99
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=60.67 E-value=69 Score=28.27 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=46.5
Q ss_pred ecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..+.++.-.... ..+.+.++++.. |.....--+++..++ .....++..... ++......+++.|++|.+.++.+
T Consensus 35 ~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~ 112 (216)
T PRK10840 35 FEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGA 112 (216)
T ss_pred ECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCC
Confidence 345544333222 134677777533 211012223444443 234566666544 45566778899999999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
+.++.+.
T Consensus 113 ~~~l~~a 119 (216)
T PRK10840 113 PTDLPKA 119 (216)
T ss_pred HHHHHHH
Confidence 9886553
No 100
>PLN02334 ribulose-phosphate 3-epimerase
Probab=60.50 E-value=39 Score=31.35 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=62.0
Q ss_pred hhHHHHHHHhCCcEEEEcCc---chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC--CC
Q 017770 60 KQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 134 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--~~ 134 (366)
-+.+-.|++.|+|++.|.-+ +....+.+.. +.+.|..++..+.-.++.+. +...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~--------------i~~~g~~iGls~~~~t~~~~--~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQ--------------IKSAGMKAGVVLNPGTPVEA--VEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHHHH--------------HHHCCCeEEEEECCCCCHHH--HHHHHhccCCC
Confidence 45678889999999966554 1111111111 12235566666543233332 2222234 78
Q ss_pred eEEE---e--CC--CCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEE-----ecCCH-HHHHHH
Q 017770 135 NIVI---D--LP--DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDV-KAVLAL 199 (366)
Q Consensus 135 ~vvv---~--~~--DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~-~ev~~l 199 (366)
|+.+ . +. .|....+|.+-. +... +..|.+ ..-. ..+.+-++++.|+||+++ ..+|+ ..++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 8754 2 22 243334555432 2211 122322 2222 244666788999999976 34565 344445
Q ss_pred HHhh
Q 017770 200 KEYF 203 (366)
Q Consensus 200 ~~~~ 203 (366)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 5443
No 101
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.36 E-value=19 Score=35.12 Aligned_cols=114 Identities=9% Similarity=0.111 Sum_probs=62.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv 137 (366)
-++.+..|-|+|+|++|+|+=-.|...++... .+..|-....++.- ++++.++.++.... +++-
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~--gFiY 168 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQAS--GFIY 168 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-S--SEEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCC--cEEE
Confidence 35688899999999999986222333333221 11223333334343 45566666665543 3333
Q ss_pred Ee-C---CCC-ee--eehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ID-L---PDW-QV--IPAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~-~---~DW-~i--IPlENliA~~q~~~~-~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+- . ++= +- -.+++.+..+..... -|+. .+++.++|+.+. .|+|||++-+.
T Consensus 169 ~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 169 LVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp EESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred eeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 31 1 111 12 246777777654432 3333 478888888665 89999999765
No 102
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=60.16 E-value=12 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=26.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
.+...+|+|| .+++.|..+++.|+|+|+.+
T Consensus 202 ~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD 232 (234)
T cd08570 202 KNGKKVFVWTVNTEEDMRYAIRLGVDGVITD 232 (234)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEeC
Confidence 4578899999 56999999999999999865
No 103
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=60.11 E-value=12 Score=32.89 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCceeEEEec--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 278 GPVHAYVLVP--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 278 GaVHaYv~~P--ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|-++=++..- |.-|+||.+++.||+|.+-...|+... -.-..+|+++|=+-
T Consensus 54 ~~~~l~vk~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~-----~~~~~~~~v~ia~G 106 (223)
T cd00322 54 GELELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFL-----PLEESGPVVLIAGG 106 (223)
T ss_pred CeEEEEEEEeCCCchhhHHhcCCCCCEEEEECCCccccc-----CcccCCcEEEEecC
Confidence 5566666665 899999999999999999999998641 11235788888543
No 104
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=59.76 E-value=44 Score=31.57 Aligned_cols=113 Identities=9% Similarity=0.064 Sum_probs=60.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.++|+++++++.-+.|...++-+. .++.|...+.++.-. +.+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~-------------~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREA-------------AKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 6789999999999999976544332222211 123343334433333 34555555542 2344444
Q ss_pred eC----C-CCe--eeehhhhhhcccCCCc-e--EEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 DL----P-DWQ--VIPAENIVASFQGSGK-T--VFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~~----~-DW~--iIPlENliA~~q~~~~-~--l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
-. . ..+ .-+..+.|..+.+... . +=..+++.++++. +.+. +||+++-+.
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGSa 217 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGSA 217 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECHH
Confidence 22 1 222 1234566666654322 2 2234566666655 5677 999999753
No 105
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=59.76 E-value=48 Score=29.55 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=60.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
-.+.+..+++.|++.+.++..+ .++.+...++..+. .+.+. .+-|.+.-++ +.. -+++-
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~----------~~~~~----~liin~~~~l---a~~-~~~dG 75 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELC----------QKYGV----PLIINDRVDL---ALE-LGADG 75 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHH----------HHTTG----CEEEES-HHH---HHH-CT-SE
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHh----------hcceE----EEEecCCHHH---HHh-cCCCE
Confidence 4688999999999999998744 33333223332211 01111 1123333222 111 34566
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+=+...|. |....-..++ ....|-+.+.|.+|++.+. +.|+|=|.+.|=
T Consensus 76 vHl~~~~~---~~~~~r~~~~-~~~~ig~S~h~~~e~~~a~---~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDL---PPAEARKLLG-PDKIIGASCHSLEEAREAE---ELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSS---SHHHHHHHHT-TTSEEEEEESSHHHHHHHH---HCTTSEEEEETS
T ss_pred EEeccccc---chHHhhhhcc-cceEEEeecCcHHHHHHhh---hcCCCEEEECCc
Confidence 77756665 4444444332 3457888999999966554 899999999764
No 106
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=59.47 E-value=11 Score=36.86 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=35.4
Q ss_pred CCceeEEEe-cCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 278 GPVHAYVLV-PGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~-Pggk-T~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|-..=+|.. |+|+ |+|| +.|+.||+|.+-...|+.. . .-+.+|+++|=+
T Consensus 166 ~~l~~~ik~~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~---l---~~~~~~~vliag 217 (340)
T PRK11872 166 NQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAFY---L---REVERPLVFVAG 217 (340)
T ss_pred CeEEEEEEECCCCcchhhHhhCCCCCCEEEEEcCcceeE---e---CCCCCcEEEEeC
Confidence 445555554 7776 7899 5799999999999999753 1 123589998854
No 107
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=59.32 E-value=1.1e+02 Score=27.90 Aligned_cols=98 Identities=23% Similarity=0.399 Sum_probs=57.0
Q ss_pred EEEEEEEEEcCCcc-eEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe
Q 017770 217 KATVTRVDVAGMGD-RVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV 286 (366)
Q Consensus 217 ~atVt~V~~vGmGD-RVCVDtc----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~~ 286 (366)
.++|++++++.-.- ++++..- --++||+=+.+. .+ ++-..|||-+- .|-++=++..
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~----------~~----~~~~~r~ySi~s~~~~~~~l~l~i~~ 73 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQ----------AP----GYEGTRAFSIASSPSDAGEIELHIRL 73 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEE----------cC----CCCCccccccCCCCCCCCEEEEEEEE
Confidence 68888888886322 1233321 134555544432 11 11135777763 2445555554
Q ss_pred -cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 287 -PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 287 -Pgg-kT~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|+| -|+||. .|+.||+|.+....|+...- .-..+|+++|=+-
T Consensus 74 ~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~v~iagG 118 (238)
T cd06211 74 VPGGIATTYVHKQLKEGDELEISGPYGDFFVR-----DSDQRPIIFIAGG 118 (238)
T ss_pred CCCCcchhhHhhcCCCCCEEEEECCccceEec-----CCCCCCEEEEeCC
Confidence 566 599995 79999999999998875211 1123788887543
No 108
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=59.00 E-value=31 Score=33.96 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.8
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev 196 (366)
.+.+++||+.+ +|.|+|||++.+ +||..+
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 183 GIGTPSDAAQA---MELGADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhcCCCCHHHH
Confidence 46788988765 569999999865 566654
No 109
>PRK00208 thiG thiazole synthase; Reviewed
Probab=58.90 E-value=33 Score=33.86 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=22.5
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 017770 164 AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (366)
Q Consensus 164 a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev~ 197 (366)
+.+.+++||..+ +|.|+|||++.+ +||..+.
T Consensus 182 aGI~tpeda~~A---melGAdgVlV~SAItka~dP~~ma 217 (250)
T PRK00208 182 AGIGTPSDAAQA---MELGADAVLLNTAIAVAGDPVAMA 217 (250)
T ss_pred CCCCCHHHHHHH---HHcCCCEEEEChHhhCCCCHHHHH
Confidence 346788888765 568999999865 5676543
No 110
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=58.84 E-value=1.4e+02 Score=27.36 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=62.0
Q ss_pred hhHHHHHHHhCCcEEEEcCc-chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~-~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.++..++++.|+..+-+... +.+.+++..++..+.+ +..+ ++.....++ .+.++++.+.. ..++.+++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~-~~~~---~~~~~~~ig-----~~~~~~~~a~~--aGad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGL-IKRD---YPDSEVYIT-----PTIEEVDALAA--AGADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEE-EecC---CCCCCceeC-----CCHHHHHHHHH--cCCCEEEE
Confidence 67888899999988665432 2333343333322211 0111 111010011 12334433333 35677777
Q ss_pred eCCC---CeeeehhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 139 DLPD---WQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 139 ~~~D---W~iIPlENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
+... ..--.+++++.++.... -.++..+.+.+||+. +.+.|+|.+.+.
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~---a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALN---AAKLGFDIIGTT 150 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHH---HHHcCCCEEEcc
Confidence 5432 22124567776655444 677888999999854 556799998764
No 111
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=58.83 E-value=61 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.0
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcc
Q 017770 54 WIWTESKQVMTAAVERGWNTFVFLSEN 80 (366)
Q Consensus 54 Wiw~~~K~~vT~ALEsG~~~~vv~~~~ 80 (366)
|+=..+.+.+..|..+|+|.++++-||
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd 31 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLED 31 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESST
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 344478999999999999999999876
No 112
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=58.74 E-value=40 Score=30.67 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+-+..+++.|++.+++...
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECch
Confidence 5788899999999999998863
No 113
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=58.40 E-value=58 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHhCCcEEEEcCcc
Q 017770 64 TAAVERGWNTFVFLSEN 80 (366)
Q Consensus 64 T~ALEsG~~~~vv~~~~ 80 (366)
..+.+.|+|.+.+...+
T Consensus 78 ~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 78 AAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHcCCCEEEEeccC
Confidence 48899999999988764
No 114
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=58.34 E-value=87 Score=30.09 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=55.8
Q ss_pred eeeeeEEEEEEEEEcCCcc-----eEEEeecCCCCCCceEEEeccCceEEE-EeeccccCCCCCCCCeeeec----CCce
Q 017770 212 LLSLMKATVTRVDVAGMGD-----RVCVDLCSLMRPGEGLLVGSFARGLFL-VHSECLESNYIASRPFRVNA----GPVH 281 (366)
Q Consensus 212 ~l~L~~atVt~V~~vGmGD-----RVCVDtcSll~~GEGmLVGS~S~glFL-VhsEt~es~Yva~RPFRVNA----GaVH 281 (366)
.....+++|++.+++.-++ ++++-.-.-.. +|.-.-++..|=|+ |... .-.-.|||-+-- |-+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~pGQ~v~v~~~----g~~~~R~YSias~p~~g~l~ 115 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKL--SGKGLPSFEAGDLLGILPP----GSDVPRFYSLASSSSDGFLE 115 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCccc--ccCCCCCcCccCEEEEecC----CCCCCceEecCCCCCCCeEE
Confidence 3467788899999887533 34443221000 01111122222222 2111 111236666532 4344
Q ss_pred eEEEe-cC-CceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceEEEE
Q 017770 282 AYVLV-PG-GKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 282 aYv~~-Pg-gkT~YLSEL~sG~eVLvV-d~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
=.|.. |+ --|.||.+|+.||+|-+. ...|.-.. +-..+|+++|=
T Consensus 116 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~------~~~~~~lvlIA 162 (289)
T cd06201 116 ICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRP------AKGAAPVILIG 162 (289)
T ss_pred EEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccC------CCCCCCEEEEe
Confidence 44543 44 457899999999999875 45665431 12357888874
No 115
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=58.14 E-value=17 Score=33.86 Aligned_cols=88 Identities=17% Similarity=0.058 Sum_probs=52.2
Q ss_pred EEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 112 ~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
-.++...++++...++..+-+++.-+++.+ |+.-.....|+++... +..++-.+.+.=....+-.+++.|+|+++...
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt-~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIP-LNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEe-CCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 344566678887776665544444444443 2333444455555332 22455555555555555667889999999998
Q ss_pred CCHHHHHHHH
Q 017770 191 EDVKAVLALK 200 (366)
Q Consensus 191 ~d~~ev~~l~ 200 (366)
.|++-++..+
T Consensus 92 ~~~~v~~~~~ 101 (206)
T PRK09140 92 TDPEVIRRAV 101 (206)
T ss_pred CCHHHHHHHH
Confidence 8887665433
No 116
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.11 E-value=50 Score=34.60 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=63.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
+.+...-.+.|.+-++++++ .++++++.+. |-. ..+.+.++++-++++-. .+++.+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~d-~~~~~~~~~~-----------------g~~-~i~GD~~~~~~L~~a~i--~~a~~viv~ 488 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETS-RTRVDELRER-----------------GIR-AVLGNAANEEIMQLAHL--DCARWLLLT 488 (558)
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHC-----------------CCe-EEEcCCCCHHHHHhcCc--cccCEEEEE
Confidence 55555555778888888765 4555555443 111 24445566666665443 467888876
Q ss_pred CCCCeeeehhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 140 LPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 140 ~~DW~iIPlEN--liA--~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..|. -+| ++. .......++++.++|.++.+.. .+.|+|-|+.+.+
T Consensus 489 ~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv~p~~ 537 (558)
T PRK10669 489 IPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVVMGER 537 (558)
T ss_pred cCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEEChHH
Confidence 6554 233 221 1223456899999999888876 4689998874333
No 117
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=57.76 E-value=8.2 Score=41.37 Aligned_cols=32 Identities=13% Similarity=0.411 Sum_probs=26.2
Q ss_pred eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceE
Q 017770 295 SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (366)
Q Consensus 295 SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLl 328 (366)
.++++||||+|||.+|+. .-|||+++--+-|+
T Consensus 495 ~~IR~~dEV~vv~~~~~l--lavGra~lsg~em~ 526 (540)
T TIGR00432 495 NNIRANDEVLIVNADDEL--LATGKALLCAEEMM 526 (540)
T ss_pred CCCCCCCeEEEEcCCCcE--EEEEehhcCHHHHH
Confidence 479999999999999965 78999987555443
No 118
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=57.58 E-value=1.4e+02 Score=26.90 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=61.2
Q ss_pred chhHHHHHHHhCCcE--EEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017770 59 SKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~--~vv~~~~-----~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (366)
+.+.+..|++.|+|. |++.+.. .+.++++.++.. ..-+.|++++ =.+.+++..++.. .
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-------------~~~~~V~v~v-n~~~~~i~~ia~~-~ 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-------------PFVKRVGVFV-NEDLEEILEIAEE-L 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-------------CCCcEEEEEe-CCCHHHHHHHHHh-c
Confidence 467889999999995 5553321 233444444311 1113344432 1234555555554 3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
..+.|-+...+ |.+.+ .++.. .+.+++ ..+.+..+... ....+.|+|.+++++...
T Consensus 73 ~~d~Vqlhg~e----~~~~~-~~l~~~~~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 GLDVVQLHGDE----SPEYC-AQLRARLGLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CCCEEEECCCC----CHHHH-HHHHhhcCCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 57888887766 33322 22221 122344 44545444433 455678999999988643
No 119
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=57.02 E-value=17 Score=28.29 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=29.0
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec
Q 017770 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES 324 (366)
Q Consensus 284 v~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~ 324 (366)
=+++.|=+.+=.+++.||.|.++|.+|+. .-+||+..-+
T Consensus 18 ~L~~~GV~~~~~~f~~gd~V~i~~~~g~~--ia~G~a~~ss 56 (74)
T PF01472_consen 18 SLFAPGVVEVDGDFRKGDEVAIVDEDGEV--IAVGRANMSS 56 (74)
T ss_dssp EEEGGGEEEEETT--TTSEEEEEETTSSE--EEEEEESSTH
T ss_pred CcchHHhEECCCCcCCCCEEEEEcCCCeE--EEEEEEecCH
Confidence 34567788888889999999999999844 7788876543
No 120
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=56.96 E-value=32 Score=34.79 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=65.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH----------HHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK----------AVLALKE 201 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~----------ev~~l~~ 201 (366)
+.+.+++.+.++. + +.+++..+.+++..|.|+++|+.+ ++.|+|+|++.-.... -+.++.+
T Consensus 82 ~v~~V~~~~G~P~----~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~ 152 (320)
T cd04743 82 KPTFALIAGGRPD----Q--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRECGGHVGPRSSFVLWESAID 152 (320)
T ss_pred CCcEEEEcCCChH----H--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCcCcCCCCCCCchhhHHHHHH
Confidence 4555665544332 2 466777789999999999999774 5789999998755321 1111111
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCC-----C--ceEEEeccCceEEEEeeccc
Q 017770 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRP-----G--EGLLVGSFARGLFLVHSECL 263 (366)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~-----G--EGmLVGS~S~glFLVhsEt~ 263 (366)
.+.. ... +.....|-=|-.=|++|-=-+...-.|.- | +|+.+|+ -||...||.
T Consensus 153 ~l~~---~~~--~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGT----rFl~t~Es~ 212 (320)
T cd04743 153 ALLA---ANG--PDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGT----AYLFTEEAV 212 (320)
T ss_pred HHHH---hhc--ccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEcc----HHhcchhhc
Confidence 1100 000 00000111122337887654444444544 4 8999996 488888874
No 121
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=56.83 E-value=30 Score=26.39 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=34.5
Q ss_pred eEEEecCCceeeeeeccC---------CCeEEEEcCCCCeeEEeeeeEEE-eccceEEEEEEeeccCCCceee
Q 017770 282 AYVLVPGGKTCYLSELKS---------GKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVEAKALALAGHSEPS 344 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~s---------G~eVLvVd~~G~tR~a~VGRvKI-E~RPLlLIeAe~~~~~~g~~~s 344 (366)
+.|++++|++..+.||-. |.+|+.+|.++......+=..+. ...|++-|+.+ +|+.+.
T Consensus 5 t~V~~~~G~~~~i~el~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~i~t~-----~g~~i~ 72 (81)
T TIGR01445 5 TKVLTEDGETVKIGELVEKEKDEKEPIKVKVLSLDGGKIVKARPVVVWKRRAEGKLIRIKTE-----NGREIK 72 (81)
T ss_pred CEEEeCCCCEEEHHHHHHHHhccCCccceEEEeecCCcEEEeeceEEEEecCCCcEEEEEeC-----CCCEEE
Confidence 566778888889998877 67899887664333222222333 22355555444 355554
No 122
>PRK09206 pyruvate kinase; Provisional
Probab=56.57 E-value=35 Score=36.16 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=86.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.||+.+.-|++-|+|.+-... .+++.++++.++ +... ++.+..+.+|.+++-++.+..-....|-
T Consensus 173 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 578889999999999654432 123344444333 2222 2456788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhhhc-------ccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPD-WQVIPAENIVAS-------FQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~D-W~iIPlENliA~-------~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
+.|--.| .-=+|.|.+.+. +...+.-+|.. ..+-.|+--.+.+..-|+|+|+|.-+.
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 8884444 344667666542 22222233331 345578888899999999999996653
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 320 yPveaV~~m~~I~~ 333 (470)
T PRK09206 320 YPLEAVSIMATICE 333 (470)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666677664
No 123
>PRK04302 triosephosphate isomerase; Provisional
Probab=56.37 E-value=90 Score=28.92 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC
Q 017770 63 MTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP 141 (366)
Q Consensus 63 vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~ 141 (366)
+..+-+.|+|+++++. |....-.++.++-. .....|- ..++.+.+.++++.+.. ...+++-++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~----------~a~~~Gl--~~I~~v~~~~~~~~~~~--~~~~~I~~~p~ 143 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVE----------RAKKLGL--ESVVCVNNPETSAAAAA--LGPDYVAVEPP 143 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHH----------HHHHCCC--eEEEEcCCHHHHHHHhc--CCCCEEEEeCc
Confidence 7777889999999875 21111111111000 0011122 12345556666555432 23455555432
Q ss_pred CCee---ee--------hhhhhhcccC--CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 142 DWQV---IP--------AENIVASFQG--SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 142 DW~i---IP--------lENliA~~q~--~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
|-+ .+ ++.+++.+.. .+..+++ .+++.++++. +++.|+|||++-+
T Consensus 144 -~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 144 -ELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred -cccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 311 11 3344444432 2345554 3456666655 5789999998754
No 124
>PRK15452 putative protease; Provisional
Probab=56.16 E-value=1.2e+02 Score=31.85 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=72.0
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhc
Q 017770 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQ 127 (366)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~ 127 (366)
++-....+.+.+.+|++.|+|+|.+.-+. +..+..+.. .-+ .+.-+.....|+++.+.+... ..++++.+.
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl----~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENL----ALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHH----HHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 45567788999999999999999995431 000000000 000 000122345566654433333 233443333
Q ss_pred ccc-----CCCCeEEEeCCCCeeeehhhhhhcccCCCceEE----EEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHH
Q 017770 128 PAD-----GQAENIVIDLPDWQVIPAENIVASFQGSGKTVF----AISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 197 (366)
Q Consensus 128 ~~~-----~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~----a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~ 197 (366)
... ...|-+|+ .||-+|-+ +.+. ..+..|. +-+.|...++.+ .+.|+++|+|.++ +.+||+
T Consensus 80 ~~l~~l~~~gvDgvIV--~d~G~l~~---~ke~-~p~l~ih~stqlni~N~~a~~f~---~~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 80 RDLEPVIAMKPDALIM--SDPGLIMM---VREH-FPEMPIHLSVQANAVNWATVKFW---QQMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHHHhCCCCEEEE--cCHHHHHH---HHHh-CCCCeEEEEecccCCCHHHHHHH---HHCCCcEEEECCcCCHHHHH
Confidence 222 23566776 45665522 2211 1122333 335666666655 4679999999998 468877
Q ss_pred HHHH
Q 017770 198 ALKE 201 (366)
Q Consensus 198 ~l~~ 201 (366)
++++
T Consensus 151 ~i~~ 154 (443)
T PRK15452 151 EIRQ 154 (443)
T ss_pred HHHh
Confidence 7653
No 125
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=56.07 E-value=1.3e+02 Score=27.04 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.0
Q ss_pred CCceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 288 GGKTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 288 ggkT~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|.-|+|| ..|+.||.|.+-...|.... .-+.+|+++|=+-
T Consensus 69 G~~s~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~lliagG 109 (227)
T cd06213 69 GAFSGWLFGADRTGERLTVRGPFGDFWL------RPGDAPILCIAGG 109 (227)
T ss_pred CcchHHHHhcCCCCCEEEEeCCCcceEe------CCCCCcEEEEecc
Confidence 4458999 66999999999999997532 1134788877543
No 126
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=56.02 E-value=12 Score=37.22 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=42.8
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----------cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017770 265 SNYIASRPFRVNA------GPVHAYVLV-----------PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 265 s~Yva~RPFRVNA------GaVHaYv~~-----------PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPL 327 (366)
.|...+|||-+-. |-+|=.|.. +|--|.||++|+.||+|-+.-..|.-+.- .-..+|+
T Consensus 159 lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp-----~~~~~pl 233 (382)
T cd06207 159 CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLP-----KDPKKPI 233 (382)
T ss_pred CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCC-----CCCCCCE
Confidence 3778888888743 334444432 25567999999999999998877754211 1126899
Q ss_pred EEEEE
Q 017770 328 ILVEA 332 (366)
Q Consensus 328 lLIeA 332 (366)
++|=+
T Consensus 234 ImIa~ 238 (382)
T cd06207 234 IMVGP 238 (382)
T ss_pred EEEcC
Confidence 99854
No 127
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=55.79 E-value=1.1e+02 Score=29.70 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=53.2
Q ss_pred ceeeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCee-eec----CC
Q 017770 211 NLLSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFR-VNA----GP 279 (366)
Q Consensus 211 ~~l~L~~atVt~V~~vGmGD-RVCVDtc-----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFR-VNA----Ga 279 (366)
..-....++|++++++.-.= ..++..- --+.||+=+.+. +..+....++.-.|||. ++. |-
T Consensus 29 ~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~--------~~~~~~~~~~~~~R~YS~~s~~~~~~~ 100 (300)
T PTZ00319 29 DPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFR--------CDCTTPGKPETVQHSYTPISSDDEKGY 100 (300)
T ss_pred CcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEE--------EEeCCCCccceEEeeeccCCCcccCCE
Confidence 34456678999999886432 3455321 124455533322 22211111223345554 333 33
Q ss_pred ceeEEEe---------c--CCceeeeeeccCCCeEEEEcCCCCe
Q 017770 280 VHAYVLV---------P--GGKTCYLSELKSGKEVIVVDQKGRQ 312 (366)
Q Consensus 280 VHaYv~~---------P--ggkT~YLSEL~sG~eVLvVd~~G~t 312 (366)
..=+|.. | |.-|+||..|+.||+|.+-...|+.
T Consensus 101 i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f 144 (300)
T PTZ00319 101 VDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKF 144 (300)
T ss_pred EEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceee
Confidence 3334443 2 7788999999999999998888865
No 128
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=55.44 E-value=16 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=26.0
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017770 290 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (366)
Q Consensus 290 kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKI 322 (366)
.-++|.+|+.||+|.+.+.+|+.+.=-|=+++|
T Consensus 102 ~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~i 134 (174)
T TIGR03784 102 HFAFLQELRPGDVIRLQTPDGQWQSYQVTATRV 134 (174)
T ss_pred cCCChhhCCCCCEEEEEECCCeEEEEEEeEEEE
Confidence 367899999999999999999876554544443
No 129
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=55.29 E-value=87 Score=30.50 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=54.3
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCC-----eeeehhhhhhcc---cCCCceEEEEcCCHHH---HHHHHHHhhcccCeE
Q 017770 118 STPQELQQLQPADGQAENIVIDLPDW-----QVIPAENIVASF---QGSGKTVFAISKTPSE---AQIFLEALEQGLGGI 186 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW-----~iIPlENliA~~---q~~~~~l~a~v~~~~e---A~~al~~LE~G~DGV 186 (366)
..++-++.+.. ...|.|+++..|= +----+|++..+ ...+..++..++..+. ..-...+|..|+|||
T Consensus 12 ~~~~~~~ka~~--~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~gi 89 (288)
T TIGR01588 12 NNPAMISDAFI--YGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDVV 89 (288)
T ss_pred CCHHHHHhhhh--cCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCEE
Confidence 44454444332 4589999977762 211123344433 2234579999996544 456677788999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 017770 187 VLK-VEDVKAVLALKEYFD 204 (366)
Q Consensus 187 vl~-~~d~~ev~~l~~~~~ 204 (366)
+|. .++++++..+.+.+.
T Consensus 90 vlPKv~s~~~v~~~~~~l~ 108 (288)
T TIGR01588 90 RLPKTDTAEDIHELEKLIE 108 (288)
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 985 567889988877764
No 130
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=55.25 E-value=14 Score=32.90 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 269 ASRPFRVN-----AGPVHAYVLVPGGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 269 a~RPFRVN-----AGaVHaYv~~PggkT~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
..|||-+- .|-+.=+|...|+-|+||. .|+.||+|.+-...|+... +-+.+|+++|=+-
T Consensus 40 ~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~vlia~G 104 (216)
T cd06198 40 EPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPGTRVTVEGPYGRFTF------DDRRARQIWIAGG 104 (216)
T ss_pred CCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCCCEEEEECCCCCCcc------cccCceEEEEccc
Confidence 34666663 2445556667788999999 8999999999988887422 1125788887543
No 131
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.20 E-value=1.3e+02 Score=28.21 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=64.2
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhh
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~ 123 (366)
.+|++- .+.+-+...++.|++.+++...- .+.+++.++=..+--|-..+|... ..-...+++++
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~--------~~~~~~~~~~~ 151 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLL--------KPTDFIGPEEL 151 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeec--------cccCcCCHHHH
Confidence 367766 57899999999999999988642 222333433111111222333222 00012345544
Q ss_pred hhhccccCCCCeEEEeCCCC----eeeeh---hhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 124 QQLQPADGQAENIVIDLPDW----QVIPA---ENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DW----~iIPl---ENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
.+..... .+.+++..-|= +=..+ +.+... -.-+.-.-..+++.++++.++. .|++||++-+
T Consensus 152 ~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 152 LRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 3333322 44455432211 11112 223222 1112233345899999997765 5999999865
No 132
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.84 E-value=30 Score=34.06 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..++.|.+||+.+ ++.|+|.|+|++-.+++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA---~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQA---LAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999997665 5889999999999999888877654
No 133
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=54.77 E-value=35 Score=33.16 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
...|..+++|.+||+.+ ++.|+|.|.|.+=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35788999999998765 5899999999999999988877755
No 134
>PRK06354 pyruvate kinase; Provisional
Probab=54.63 E-value=38 Score=36.85 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=88.3
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccc-cCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVY-DSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~-~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+|++.+.-|++-|+|.|-+.. .+++.++++.++ + ...++.+..+.+|.+++.++.+-.-....|-
T Consensus 179 kD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeI~~~~Dg 245 (590)
T PRK06354 179 KDREDLIFGLEQGVDWIALSFVRNPSDVLEIREL-------------IEEHNGKHIPIIAKIEKQEAIDNIDAILELCDG 245 (590)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcCE
Confidence 578889999999999765542 224444444443 2 1124566788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPD-WQVIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~D-W~iIPlENli-------A~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|--.| .-=+|.|.+- +.+...+.-+|.. ..+-.|+--.+.+..-|+|+|+|.-+.
T Consensus 246 ImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~ 325 (590)
T PRK06354 246 LMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGD 325 (590)
T ss_pred EEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCC
Confidence 8884444 3345666543 3332233334431 334578888889999999999999553
Q ss_pred --HHHHHHHHHhhcc
Q 017770 193 --VKAVLALKEYFDG 205 (366)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 326 yPveaV~~m~~I~~~ 340 (590)
T PRK06354 326 YPVEAVQTMATIAVR 340 (590)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777643
No 135
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=53.72 E-value=14 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=22.6
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEE
Q 017770 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA 315 (366)
Q Consensus 283 Yv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a 315 (366)
=|+|.+|..+-..+++.||+||. .||+.|++
T Consensus 7 ~vlmaDG~~k~ie~i~~Gd~vmg--~dg~~r~V 37 (215)
T PF05203_consen 7 RVLMADGSIKPIEDIKIGDQVMG--PDGRPRRV 37 (215)
T ss_dssp EEEBTTS-EEEGGG--TT-EEEB--TTSSEEEE
T ss_pred EEEecCCCeeEEeecccCCEEEC--CCCCcEEE
Confidence 48999999999999999999875 77777654
No 136
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.50 E-value=69 Score=28.34 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=47.6
Q ss_pred CeeEEEEEecChhh--hhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhccc
Q 017770 109 RRVGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGL 183 (366)
Q Consensus 109 k~v~~~~~v~~~ed--~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~ 183 (366)
..+..-..+.++.. .+.+. ..+++++++...... -.++.++..++..+-+++. ...|++|+. .+++.|+
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~--~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~ 127 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAF--KAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGV 127 (202)
T ss_pred CEEEEEEEeccccHHHHHHHH--hcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCC
Confidence 34444445555532 22222 246888888776643 3467788887766667664 555666665 4778899
Q ss_pred CeEEEec
Q 017770 184 GGIVLKV 190 (366)
Q Consensus 184 DGVvl~~ 190 (366)
|-|++.|
T Consensus 128 d~v~~~~ 134 (202)
T cd04726 128 DIVILHR 134 (202)
T ss_pred CEEEEcC
Confidence 9999853
No 137
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.32 E-value=1.1e+02 Score=27.10 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEE-EEEecChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS-IIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~-~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
...+..+.+.|+|.++++.+. .+...++-+. .++.|.+.+. .....++++..++. ....+++.
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~-------------~~~~g~~~~v~~~~~~t~~e~~~~~--~~~~d~v~ 131 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA-------------AKKYGKEVQVDLIGVEDPEKRAKLL--KLGVDIVI 131 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-------------HHHcCCeEEEEEeCCCCHHHHHHHH--HCCCCEEE
Confidence 346788999999999987542 1111111111 1122444433 24556677655422 23678887
Q ss_pred EeC----CCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 138 IDL----PDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 138 v~~----~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.. .....-.-..-+.++.. .+..+.+. .-.. ...+-++++.|+||+++-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~-GGI~-~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 132 LHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVA-GGIT-PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred EcCcccccccCCCCCHHHHHHHHhhcCCCEEEE-CCcC-HHHHHHHHhcCCCEEEEee
Confidence 731 11111111222232221 22223222 2222 3345677889999998765
No 138
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=52.92 E-value=18 Score=32.56 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
+..+++|+|| .+++.+..++..|+|+|+.+
T Consensus 197 ~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 197 DAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 4567899999 57999999999999999865
No 139
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=52.86 E-value=81 Score=30.55 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred eeEEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEE
Q 017770 215 LMKATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYV 284 (366)
Q Consensus 215 L~~atVt~V~~vGmGD-RVCVDtcS----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHaYv 284 (366)
-.+++|++++++.-.- ++.++.-. -++||+=+.+. ... -..|||-+-. |-+.=+|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~---------~~~------~~~R~ySias~p~~~~~l~~~i 166 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFI---------LKD------GKRRSYSIANAPHSGGPLELHI 166 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEE---------CCC------CceeeeecCCCCCCCCEEEEEE
Confidence 3468888888876442 34443321 24455533332 111 1247777643 3333334
Q ss_pred E-ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 285 L-VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 285 ~-~Pggk-T~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
. .|+|. |.|| .+|+.||+|.+-...|+-..- +-..+|+++|=
T Consensus 167 k~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~-----~~~~~~ivlIa 211 (339)
T PRK07609 167 RHMPGGVFTDHVFGALKERDILRIEGPLGTFFLR-----EDSDKPIVLLA 211 (339)
T ss_pred EecCCCccHHHHHHhccCCCEEEEEcCceeEEec-----CCCCCCEEEEe
Confidence 3 46665 6798 589999999998888865311 12357888874
No 140
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.74 E-value=96 Score=28.37 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
-.+++.++++.|++.+=++..+ .+..+...++ .++. .+ ....+...++.+.+.. ..++.
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~~------------~~-g~gtvl~~d~~~~A~~--~gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPEC------------II-GTGTILTLEDLEEAIA--AGAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCCc------------EE-eEEEEEcHHHHHHHHH--cCCCE
Confidence 3678899999999988887433 2222222222 1100 01 1224455666555543 36788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 017770 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (366)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~ 203 (366)
+++-..|-.+++.-+... ...++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~-----~~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD-----IPIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC-----CCEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 888777877766544332 234555 89999986655 6899999776664 45555555443
No 141
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=52.47 E-value=67 Score=31.16 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred ecChhhhhhhccccCCCCeEEEeC-----CCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 117 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~-----~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
+.++++...+.. ..++.+++.. .||.+..++.|....+.- +..||+ .......+-++.+|..|+|||.+-
T Consensus 180 v~s~~~a~~a~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia-~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVD--AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL-DGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHH--CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE-eCCCCCHHHHHHHHHcCCCEEEEc
Confidence 567776444433 4678888844 367777777664432322 345554 344444455556667899999998
Q ss_pred cC
Q 017770 190 VE 191 (366)
Q Consensus 190 ~~ 191 (366)
+.
T Consensus 257 ~~ 258 (299)
T cd02809 257 RP 258 (299)
T ss_pred HH
Confidence 74
No 142
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=52.47 E-value=22 Score=32.97 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
+..+.+++|| .+.+.+..+++.|+|+|+.+.
T Consensus 210 ~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 210 AAGLEVHVWTVNDPAEMRRLLDLGVDGIITDR 241 (249)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEcCC
Confidence 4678899999 679999999999999999765
No 143
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=52.38 E-value=17 Score=34.40 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=27.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.....+++|| .+.+.|...++.|+|+|+.+..
T Consensus 229 ~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 229 KRGIQVYLWVLNDEEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred hcCCcEEEEEECCHHHHHHHHhcCCCEEEeCCc
Confidence 3567799999 5699999999999999998754
No 144
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=52.14 E-value=1.1e+02 Score=28.75 Aligned_cols=111 Identities=16% Similarity=0.245 Sum_probs=63.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~---------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~ 128 (366)
+--+++....+.|++.+.+-.-++ +..+++.+-.. -|+.+.+| |.+.+|.+.+..
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~-ipv~~~GG---------------i~s~~~~~~~l~ 94 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF-IPLTVGGG---------------IRSVEDARRLLR 94 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC-CCEEeeCC---------------CCCHHHHHHHHH
Confidence 345778888899999876654221 23333322211 13333333 578888777665
Q ss_pred ccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcC---------------------CHHHHHHHHHHhhcccC
Q 017770 129 ADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISK---------------------TPSEAQIFLEALEQGLG 184 (366)
Q Consensus 129 ~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~---------------------~~~eA~~al~~LE~G~D 184 (366)
..++.+++... ++.+ ++++.+.+.. .+++..+. +......+.+..+.|++
T Consensus 95 --~Ga~~Viigt~~l~~p~~--~~ei~~~~g~--~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (253)
T PRK02083 95 --AGADKVSINSAAVANPEL--ISEAADRFGS--QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAG 168 (253)
T ss_pred --cCCCEEEEChhHhhCcHH--HHHHHHHcCC--CCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCC
Confidence 24778888653 3332 3556665521 24444332 22334555667889999
Q ss_pred eEEEec
Q 017770 185 GIVLKV 190 (366)
Q Consensus 185 GVvl~~ 190 (366)
++++.+
T Consensus 169 ~ii~~~ 174 (253)
T PRK02083 169 EILLTS 174 (253)
T ss_pred EEEEcC
Confidence 999966
No 145
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=52.09 E-value=18 Score=33.68 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 50 ~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+++|| .+++.|..+++.|+|+++.+..
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 5799999999999999997653
No 146
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.70 E-value=20 Score=33.78 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=26.7
Q ss_pred CCCcEEEEEe-----CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-----ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-----~~K~~vT~ALEsG~~~~vv~~ 78 (366)
...+++|+|| .+++.+...++.|+|+|+.+.
T Consensus 221 ~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 221 ENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPND 256 (265)
T ss_pred HcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCC
Confidence 4677899997 568999999999999999765
No 147
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=51.62 E-value=1.3e+02 Score=27.23 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=55.8
Q ss_pred EEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEEEe
Q 017770 217 KATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYVLV 286 (366)
Q Consensus 217 ~atVt~V~~vGmGD-RVCVDtcS----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHaYv~~ 286 (366)
+++|++++.+.-+- ++++.... -..||+=+.+- ... + -..|||-+-. |-+.=++..
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~---------~~~----~-~~~r~ySi~s~~~~~~~l~l~vk~ 67 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDIT---------VPG----T-EETRSFSMANTPADPGRLEFIIKK 67 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEE---------cCC----C-CcccccccCCCCCCCCEEEEEEEE
Confidence 57888888875543 23444221 24555544432 111 1 1346666532 334444544
Q ss_pred -cCCc-eeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 287 -PGGK-TCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 287 -Pggk-T~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
|+|. |.||.+ |+.||+|.+-...|+...- +.+.+|+++|=
T Consensus 68 ~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~l~ia 110 (232)
T cd06212 68 YPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLR-----ESRDRPIVLIG 110 (232)
T ss_pred CCCCchhhHHhhcCCCCCEEEEEcCcccceec-----CCCCCcEEEEe
Confidence 5554 899986 9999999999888866421 12457888764
No 148
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.50 E-value=33 Score=35.05 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=34.4
Q ss_pred CCCCeEEEeCC-----------CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 131 GQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 131 ~~~~~vvv~~~-----------DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..++.++++++ +|.. +-.++.+ .+..|++ .+.+.++|+.++ +.|+|+|++-
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik~---~~ipVIaG~V~t~e~A~~l~---~aGAD~V~VG 215 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIYE---LDVPVIVGGCVTYTTALHLM---RTGAAGVLVG 215 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHH--HHHHHHH---CCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 45899999764 4533 3344443 4567877 777777776655 5899999875
No 149
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=51.25 E-value=24 Score=32.94 Aligned_cols=52 Identities=27% Similarity=0.327 Sum_probs=39.2
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 278 GaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|-++=+|..-|.-|+||.+++.||+|.+-...|+.-.. -..+.||+++|=+=
T Consensus 56 ~~l~~~Ik~~G~~S~~L~~l~~G~~v~i~gP~G~~f~~----~~~~~~~iv~IA~G 107 (253)
T cd06221 56 GPLELTIRRVGRVTEALHELKPGDTVGLRGPFGNGFPV----EEMKGKDLLLVAGG 107 (253)
T ss_pred CeEEEEEEeCChhhHHHHcCCCCCEEEEECCcCCCccc----ccccCCeEEEEccc
Confidence 55777788788899999999999999999998874221 11246888887543
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.14 E-value=68 Score=31.12 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vv 137 (366)
-.+.+..|-|+|+|++++++=-.+..+++... .++.|-....++.-++ .+.++.++.... +++-
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s~--gfIY 170 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHAS--GFVY 170 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhCC--CcEE
Confidence 46789999999999999985222223222211 1122322223333344 455555555432 3332
Q ss_pred E----eCCCCe-e--eehhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 I----DLPDWQ-V--IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v----~~~DW~-i--IPlENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+ -.++.+ - -++++.+..+.+. +..++ ..+++.++++.++ + ++|||++-+.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~---~-~ADGviVGSa 230 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA---A-VADGVIVGSA 230 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH---H-hCCEEEEcHH
Confidence 2 113442 2 2366666666543 33333 4567888888766 3 4999999874
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=51.12 E-value=90 Score=29.53 Aligned_cols=121 Identities=22% Similarity=0.191 Sum_probs=80.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.+.++.|+..+=++-.+.+-.+.+..+..- .+ +..+ --..|.++|+.+.+.. ..++++|-
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~----------~~--~~~v-GAGTVl~~~~a~~a~~--aGA~Fivs 86 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE----------VP--DALI-GAGTVLNPEQLRQAVD--AGAQFIVS 86 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH----------CC--CCEE-EEEeCCCHHHHHHHHH--cCCCEEEC
Confidence 46788999999999887775432222222222110 01 1222 2348899999777765 35677754
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~ 203 (366)
-..| ++++...+..+--.+-.+-++.|+.. +++.|+|-|=+-|-+ ++-++.|+..+
T Consensus 87 P~~~------~~v~~~~~~~~i~~iPG~~TptEi~~---A~~~Ga~~vKlFPA~~~GG~~yikal~~pl 146 (204)
T TIGR01182 87 PGLT------PELAKHAQDHGIPIIPGVATPSEIML---ALELGITALKLFPAEVSGGVKMLKALAGPF 146 (204)
T ss_pred CCCC------HHHHHHHHHcCCcEECCCCCHHHHHH---HHHCCCCEEEECCchhcCCHHHHHHHhccC
Confidence 3333 36777777777789999999999765 578999999998876 56677777665
No 152
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=50.86 E-value=1.1e+02 Score=27.47 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 270 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 270 ~RPFRVN-----AGaVHaYv~~-Pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.|||-+- .|-+.-+|.. ++| -|+||-. |+.||+|.+-..-|+.... .-..+|+++|=
T Consensus 41 ~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~ivlia 105 (224)
T cd06189 41 KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLR-----EDSDRPLILIA 105 (224)
T ss_pred ceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCCCEEEEecCCccEEec-----cCCCCCEEEEe
Confidence 4555542 3555556655 434 5889865 9999999999988876321 11357888774
No 153
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=50.65 E-value=44 Score=32.53 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..+++|.+||+.+ ++.|+|.|.|.+=.+++++++.+.+
T Consensus 182 ~~~Igvev~s~eea~~A---~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEVETLEQLKEA---LEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCcCHHHHHHHHHHc
Confidence 34789999999998776 4789999999999999988877765
No 154
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=50.52 E-value=49 Score=35.10 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=71.0
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017770 54 WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (366)
Q Consensus 54 Wiw~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (366)
++-.+.++.+.+.+|.|+|-++++..|-+....|..+.+|+..+ + +.. .+...|.+.|+-..+.. ..+
T Consensus 244 g~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~-------p--~~~-vi~g~v~t~e~a~~a~~--aGa 311 (505)
T PLN02274 244 GTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY-------P--ELD-VIGGNVVTMYQAQNLIQ--AGV 311 (505)
T ss_pred cCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC-------C--CCc-EEEecCCCHHHHHHHHH--cCc
Confidence 33346799999999999999999876543333333443333201 0 111 12236788888666554 467
Q ss_pred CeEEEe--------CCC------CeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 134 ENIVID--------LPD------WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 134 ~~vvv~--------~~D------W~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
|.|++. .+. .+.=++.++-...+..+..||+. +++..++. .+|..|+|+|++-+-
T Consensus 312 D~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~---kAla~GA~~V~vGs~ 382 (505)
T PLN02274 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIV---KALTLGASTVMMGSF 382 (505)
T ss_pred CEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEchh
Confidence 877762 111 12223333333333335567764 56666654 556789999998654
No 155
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=50.06 E-value=17 Score=34.57 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|--|.||.+|+.||+|.+-...|+.-... .-..+|+++|=+
T Consensus 103 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 143 (286)
T cd06208 103 GVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIAT 143 (286)
T ss_pred cchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEec
Confidence 66799999999999999988888642211 013578888854
No 156
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=49.79 E-value=25 Score=31.66 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=36.0
Q ss_pred CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 278 GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 278 GaVHaYv~~-Pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|-+.=+|.. |+| -|+||.. |+.||.|.+....|+.-. .. ..+|+++|=+-
T Consensus 59 ~~i~~~i~~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~---~~---~~~~~vlia~G 111 (228)
T cd06209 59 PRLEFLIRLLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYL---RE---VKRPLLMLAGG 111 (228)
T ss_pred CeEEEEEEEcCCCcchhhHHhccCCCCEEEEECCccccee---cC---CCCeEEEEEcc
Confidence 556666665 655 4899998 999999999999887632 11 24788887544
No 157
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=49.65 E-value=19 Score=35.01 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCeeeecCC-----ceeEEE-ecCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 270 SRPFRVNAGP-----VHAYVL-VPGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 270 ~RPFRVNAGa-----VHaYv~-~Pggk-T~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|||-+-..| +-=+|. .|+|+ |+||. +|+.||+|.+-...|+-..- .-..+|+++|=+=
T Consensus 54 ~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~-----~~~~~~~vliAgG 120 (332)
T PRK10684 54 LRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCD-----DKAEDKYLLLAAG 120 (332)
T ss_pred eeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcCCCCCEEEEeCCccccccC-----CCCCCcEEEEecC
Confidence 3666664322 222333 37666 89995 89999999998888875211 1235788887543
No 158
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=49.56 E-value=21 Score=33.37 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+++++|| .+.+.+...++.|+|+|+.+..
T Consensus 207 ~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 207 AAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 5678899999 5699999999999999998754
No 159
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=49.02 E-value=1.3e+02 Score=25.38 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (366)
..+.++++......-. -+++..++.. ...++... +..+.......++.|+++++.+|.+++++.+.-+.
T Consensus 45 ~~dlvi~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~ 115 (204)
T PRK09958 45 KPDIVIIDVDIPGVNG-IQVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 (204)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHH
Confidence 4577777544333222 2344444332 23444443 34455666788999999999999998877654443
No 160
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=48.98 E-value=25 Score=32.65 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=39.3
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|||=+-. |-+.=.+..-|+-|+||.+|+.||+|.+-...|+.- ..-. ..+|+++|=+-
T Consensus 44 ~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~i~gP~G~~~--~~~~---~~~~~vlIagG 107 (246)
T cd06218 44 RRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLGNGF--DLPD---DDGKVLLVGGG 107 (246)
T ss_pred CCceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEEEEecCCCCc--CCCC---CCCcEEEEecc
Confidence 46665533 223334555577899999999999999998888631 1212 36788887543
No 161
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=48.75 E-value=22 Score=32.72 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=26.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.+|+|| .+.+.|...++.|+|+++.+.
T Consensus 203 ~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD~ 234 (237)
T cd08583 203 KAGIYVYVYTINDLKDAQEYKKLGVYGIYTDF 234 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 4577899999 458899999999999998643
No 162
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.68 E-value=83 Score=28.93 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=53.9
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCe---eeehhhhhhccc-CCCceEE--E
Q 017770 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASFQ-GSGKTVF--A 164 (366)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~---iIPlENliA~~q-~~~~~l~--a 164 (366)
.|..|.+.+|..+.. +|+.--..+...++.++-+.... ...+++.+...|=. ....-+.|.++- ..+..++ .
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~-~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVD-AGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHH-cCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 345567788876643 23211122234566665555444 34677777555421 112222333221 1222233 3
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
.+++.++++.++. .|+|+|++.+....
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVE 110 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhh
Confidence 5689999988875 79999999986543
No 163
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.59 E-value=1.1e+02 Score=29.23 Aligned_cols=125 Identities=17% Similarity=0.061 Sum_probs=64.9
Q ss_pred CchhHHHHHHHhCCcEEEEcC---cchhhhhhcccee-eeeeeee--cCCccccCCCCeeEEEEEec--Chhhhhhhccc
Q 017770 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LLDPLFI--KEGEVYDSGDRRVGSIIEVS--TPQELQQLQPA 129 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~---~~~~~~~~l~~i~-~i~~l~~--~~g~~~~~~gk~v~~~~~v~--~~ed~e~~~~~ 129 (366)
++.+-+...++.|++.+++.. ++.++.+++.+.+ ++ .+.+ .+|.+...... +-+ ++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~i-vvslD~k~g~v~~~gw~------~~~~~~~~e~~~~~~~ 155 (241)
T PRK14114 83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEP-VFSLDTRGGKVAFKGWL------AEEEIDPVSLLKRLKE 155 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCE-EEEEEccCCEEeeCCCe------ecCCCCHHHHHHHHHh
Confidence 578999999999999999886 4566666664332 11 1222 33332211111 111 22221111111
Q ss_pred cCCCCeEEEeCC--C--CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--hhcc-cCeEEEec
Q 017770 130 DGQAENIVIDLP--D--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 190 (366)
Q Consensus 130 ~~~~~~vvv~~~--D--W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~--LE~G-~DGVvl~~ 190 (366)
.....+|+..- | .+=+.+|.+-.-.+..+..|++ .+.+.+|-+.+... +..| ++|+++..
T Consensus 156 -~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 156 -YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred -cCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 12455555321 1 1223344332222223446665 58999998877653 2457 99999864
No 164
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=48.47 E-value=68 Score=37.36 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=59.8
Q ss_pred eeEEEEEEEEEcCCcceE-EE---eecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee---e--cCCceeEEE
Q 017770 215 LMKATVTRVDVAGMGDRV-CV---DLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV---N--AGPVHAYVL 285 (366)
Q Consensus 215 L~~atVt~V~~vGmGDRV-CV---DtcSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRV---N--AGaVHaYv~ 285 (366)
+-.++|.+++.++-+-.- .+ +..-..+||+=+.|-.+ +....+...+|||-+ + .|-+--.+.
T Consensus 790 ~l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~---------~~g~~~l~~p~P~SI~~vD~e~g~It~i~r 860 (1028)
T PRK06567 790 LLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNY---------SEDAAKLIEPVALSPIDIDVEKGLISFIVF 860 (1028)
T ss_pred hhceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeC---------CCCCccccCceeEEeeccCCCCCEEEEEEE
Confidence 456889998888765322 22 11223567764333221 111123457789987 2 365777777
Q ss_pred ecCCceeeeeeccCCCeEEEEcCCCCeeE
Q 017770 286 VPGGKTCYLSELKSGKEVIVVDQKGRQRT 314 (366)
Q Consensus 286 ~PggkT~YLSEL~sG~eVLvVd~~G~tR~ 314 (366)
.-|.-|++|++|+.||.|-+...-|+.-.
T Consensus 861 vVGkgT~~Ls~l~~Gd~v~v~GPLG~pF~ 889 (1028)
T PRK06567 861 EVGKSTSLCKTLSENEKVVLMGPTGSPLE 889 (1028)
T ss_pred EEChHHHHHhcCCCCCEEEEEcccCCCCC
Confidence 77999999999999999999999997533
No 165
>PRK08114 cystathionine beta-lyase; Provisional
Probab=48.21 E-value=13 Score=38.09 Aligned_cols=123 Identities=11% Similarity=0.177 Sum_probs=74.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eee-cCC---------ccccCCCCeeEEEEEecChhhhhhh
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 126 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~~~v~~~ed~e~~ 126 (366)
=|-.-++||.|-.+++|++.......-+..+ ..+ +++ ++. ..++..|..+ .++...+.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 3556678999999999998654333222222 122 222 222 1234456554 33344455555544
Q ss_pred ccccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017770 127 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 127 ~~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (366)
-. .+...|.++.. ..++.|++-|.+.+...+..++..|.+.--.-..+..++.|+|=|+
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv 205 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISI 205 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEE
Confidence 32 23566677665 4678999999988765432366677777666777999999998554
No 166
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=48.08 E-value=22 Score=32.40 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=38.5
Q ss_pred CCCCeeeecC----CceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 269 ASRPFRVNAG----PVHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 269 a~RPFRVNAG----aVHaYv~~-P-ggkT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
..|||-+--. -+.=.|.. | |.-|+||.+ |+.||+|.+....|+.. .. +...+|+++|=+-
T Consensus 56 ~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~---~~--~~~~~~llliagG 122 (247)
T cd06184 56 QIRQYSLSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDFV---LD--EASDRPLVLISAG 122 (247)
T ss_pred eeEEeEeccCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCCCceE---CC--CCCCCcEEEEecc
Confidence 3566666322 23334443 3 666999998 99999999988888642 11 1135788887543
No 167
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=48.08 E-value=13 Score=26.68 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=31.4
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017770 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (366)
Q Consensus 284 v~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE 323 (366)
+.+||.+-.--+|..+|.=..+ .+|+-+..++|.++|.
T Consensus 1 iV~PG~~l~~~~e~~~G~GTY~--~~g~I~asv~G~v~~~ 38 (39)
T PF14382_consen 1 IVVPGDRLGSSEEYMPGHGTYV--RDGNIYASVAGTVKID 38 (39)
T ss_dssp EE-TT-EEEETTTSEESTTEEE--ETTEEEESSSEEEEEE
T ss_pred CCCCCCEeecCCCEecCCCEEE--eCCEEEEEeeEEEEEc
Confidence 3579999888889999999888 5699999999999975
No 168
>PRK08051 fre FMN reductase; Validated
Probab=47.87 E-value=1.5e+02 Score=27.08 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=53.5
Q ss_pred EEEEEEEEEcCCcce-EEEee--cCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-c
Q 017770 217 KATVTRVDVAGMGDR-VCVDL--CSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV-P 287 (366)
Q Consensus 217 ~atVt~V~~vGmGDR-VCVDt--cSll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~~-P 287 (366)
+++|+++++++-+=. +.+.. ---++||+=+.|. -.+- ..|||-+- .|...=++.. |
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~---------~~~~------~~r~ySias~p~~~~~l~~~v~~~~ 68 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVV---------MGEK------DKRPFSIASTPREKGFIELHIGASE 68 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEE---------cCCC------cceeecccCCCCCCCcEEEEEEEcC
Confidence 577888887763221 23321 1135666644443 1111 24666652 3444434555 4
Q ss_pred CCc--eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 288 GGK--TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 288 ggk--T~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
+|+ +.++..|+.||+|.+-...|+.-.. . -..+|+++|=
T Consensus 69 ~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~---~--~~~~~~vlia 109 (232)
T PRK08051 69 LNLYAMAVMERILKDGEIEVDIPHGDAWLR---E--ESERPLLLIA 109 (232)
T ss_pred CCcchHHHHHHcCCCCEEEEEcCCCceEcc---C--CCCCcEEEEe
Confidence 443 5667899999999999988875221 1 1247888874
No 169
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.82 E-value=25 Score=32.19 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.+++|| .+++.+...++.|+|+|+.+.
T Consensus 199 ~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~ 230 (233)
T cd08582 199 DAGLKLNVWTVDDAEDAKRLIELGVDSITTNR 230 (233)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCC
Confidence 4577899999 569999999999999999764
No 170
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=47.56 E-value=24 Score=32.25 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.+++|| .+++.+..+++.|+|+|+.+.
T Consensus 198 ~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 198 KRGIPVRLWTVNEEEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEeCCC
Confidence 3577899999 579999999999999998653
No 171
>PRK05802 hypothetical protein; Provisional
Probab=47.18 E-value=14 Score=36.46 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred eeEEEEEEEEEcCCcce-EEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeE
Q 017770 215 LMKATVTRVDVAGMGDR-VCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAY 283 (366)
Q Consensus 215 L~~atVt~V~~vGmGDR-VCVDtc-----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaY 283 (366)
-.+++|++++.+.-.-+ +-++.- ..++||+ +.+|-..+ .+-...|||-+- .|-+-=.
T Consensus 64 ~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQ---------Fv~l~~~~---~~~~~~rP~SI~~~~~~~g~l~l~ 131 (320)
T PRK05802 64 TYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGS---------FVFLRNKN---SSSFFDVPISIMEADTEENIIKVA 131 (320)
T ss_pred cEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCc---------eEEEEEcC---CCCEeEEeeEecccCCCCCEEEEE
Confidence 34688888888754322 223321 1245665 33332212 111224888873 2434445
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCe
Q 017770 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQ 312 (366)
Q Consensus 284 v~~PggkT~YLSEL~sG~eVLvVd~~G~t 312 (366)
+..-|..|+||.+|+.||+|.+...-|+.
T Consensus 132 ik~~G~~T~~L~~l~~Gd~l~v~GP~GnG 160 (320)
T PRK05802 132 IEIRGVKTKKIAKLNKGDEILLRGPYWNG 160 (320)
T ss_pred EEecChhHHHHhcCCCCCEEEEeCCCCcC
Confidence 55568889999999999999999998664
No 172
>PF14623 Vint: Hint-domain
Probab=47.16 E-value=32 Score=31.96 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=38.9
Q ss_pred eeEEEecCCce-eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec--cceEEE
Q 017770 281 HAYVLVPGGKT-CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPLILV 330 (366)
Q Consensus 281 HaYv~~PggkT-~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~--RPLlLI 330 (366)
++-|.+.+|++ .-.++|++||.|.. ..|..|.+.|=+.+++. -+|..|
T Consensus 6 ~s~V~l~~~~~~v~i~~lR~G~~V~t--p~G~r~V~~Vlkt~v~~~~~~lc~v 56 (162)
T PF14623_consen 6 SSLVTLASGRAPVRIDDLRAGDKVWT--PRGPRKVAAVLKTPVESGSEDLCRV 56 (162)
T ss_pred CcEEEEecCceeEEHHHccCCCEEEC--CCCCeEEEEEEEEeecCCceEEEEE
Confidence 56788899999 99999999999876 55888888888888887 555544
No 173
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.02 E-value=26 Score=32.53 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
...++|++|| .+.+.|...++.|+|+++.+
T Consensus 197 ~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 197 AGTWKWVIYEVNEPAEALALAARGVALIETD 227 (229)
T ss_pred hCCceEEEEEcCCHHHHHHHHHhCCcEEEcC
Confidence 4567799999 57888999999999999865
No 174
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.01 E-value=1.1e+02 Score=32.72 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=66.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
+.+...-.+.|.+.++++.+ .+.++++.+. |.+ ..+.+.++++-++++-. .+++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~agi--~~A~~vv~~ 471 (601)
T PRK03659 413 QVIGRLLMANKMRITVLERD-ISAVNLMRKY-----------------GYK-VYYGDATQLELLRAAGA--EKAEAIVIT 471 (601)
T ss_pred HHHHHHHHhCCCCEEEEECC-HHHHHHHHhC-----------------CCe-EEEeeCCCHHHHHhcCC--ccCCEEEEE
Confidence 44445445678888887764 5555554433 221 35666777777666544 467888887
Q ss_pred CCCCeeeehhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 140 LPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 140 ~~DW~iIPlENliA----~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..|. -+|+.. +-...+.+|++.++|.++++.... .|+|-|+-.
T Consensus 472 ~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~---~Ga~~vv~e 518 (601)
T PRK03659 472 CNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELLQ---AGVTQFSRE 518 (601)
T ss_pred eCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh---CCCCEEEcc
Confidence 7775 344322 222446699999999999987654 699988744
No 175
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=46.91 E-value=1.6e+02 Score=28.88 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=61.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+.-.|-.|-+.|+|+++.--.- .+.-+++-+.+. .-|- -.+++|.+.+|++.+... .++.+
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~-------------~lGl--e~lVEVh~~~El~~al~~--~a~ii 182 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAH-------------SLGL--EALVEVHNEEELERALEA--GADII 182 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHH-------------HTT---EEEEEESSHHHHHHHHHT--T-SEE
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHH-------------HcCC--CeEEEECCHHHHHHHHHc--CCCEE
Confidence 4677888999999998764321 111111111111 1122 378899999999987643 56778
Q ss_pred EEeCCCCee--eeh---hhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 137 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 137 vv~~~DW~i--IPl---ENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
-|+-+|-+- |.+ +.|...+.. +.-++++ +++.+|++.+ .+.|+|||++-+
T Consensus 183 GINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~~~l---~~~G~davLVGe 239 (254)
T PF00218_consen 183 GINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDARRL---ARAGADAVLVGE 239 (254)
T ss_dssp EEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHHHHH---CTTT-SEEEESH
T ss_pred EEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHHHHH---HHCCCCEEEECH
Confidence 888775432 222 233333332 2334443 4566776654 588999999753
No 176
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.70 E-value=1.8e+02 Score=27.46 Aligned_cols=124 Identities=14% Similarity=-0.009 Sum_probs=76.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.+.++.|+..+=++-.+..-.+.+..+..- .+.+..-+.--..|.++++.+.+.. ..++++|-
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~----------~~~~p~~~vGaGTV~~~~~~~~a~~--aGA~Fivs 94 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL----------YKDDPEVLIGAGTVLDAVTARLAIL--AGAQFIVS 94 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH----------cCCCCCeEEeeeeCCCHHHHHHHHH--cCCCEEEC
Confidence 36678888899998766654332222222222110 0100011223448899999777665 35677774
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d---~~ev~~l~~~~ 203 (366)
-..+ +.++......+--++-.+.|++|+..+ ++.|+|-|-+-|.+ ++.++.++..+
T Consensus 95 P~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 95 PSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred CCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 3333 456666666677899999999999766 57999999996655 45566555544
No 177
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=46.59 E-value=1.3e+02 Score=27.40 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=55.4
Q ss_pred eeeEEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee------cCCceeE
Q 017770 214 SLMKATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN------AGPVHAY 283 (366)
Q Consensus 214 ~L~~atVt~V~~vGmG-DRVCVDtcS---ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN------AGaVHaY 283 (366)
....++|++++++.-+ -++.++... -++||+=+-|. +..+.. ...|||-+- .|-+-=+
T Consensus 16 ~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~--------~~~~~~----~~~r~ysi~s~~~~~~~~l~~~ 83 (243)
T cd06216 16 RELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLG--------VEIDGV----RHWRSYSLSSSPTQEDGTITLT 83 (243)
T ss_pred ceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEE--------EEECCe----EEEEEEeccCCCcCCCCeEEEE
Confidence 3447889999887432 244444322 24555544332 111111 113444443 3434444
Q ss_pred EEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceEEEEE
Q 017770 284 VLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVEA 332 (366)
Q Consensus 284 v~~-P-ggkT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE-~RPLlLIeA 332 (366)
+.. | |.-|.||.+ ++.||+|.+-...|+-. .+-+ .+|+++|=+
T Consensus 84 ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~------l~~~~~~~~v~iag 130 (243)
T cd06216 84 VKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFV------LPDPLPPRLLLIAA 130 (243)
T ss_pred EEEcCCCcchhHHHhcCCCCCEEEEECCceeee------cCCCCCCCEEEEec
Confidence 444 4 445899986 99999999987777521 1222 578887743
No 178
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=46.53 E-value=2.5e+02 Score=26.20 Aligned_cols=114 Identities=5% Similarity=0.041 Sum_probs=60.6
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~vv~~~~-----~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+. +++.-+.|+++ .-.+++++.+++..
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~-------------~~~~~~~VgVf-~~~~~~~i~~~~~~- 73 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASA-------------VPNHIDKVCVV-VNPDLTTIEHILSN- 73 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHh-------------CCCCCCEEEEE-eCCCHHHHHHHHHh-
Confidence 356778899999999 58875433 3555555442 11223456665 33466666666554
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+-+.+-+++.-. . ..++.+... .-+++....--++....+.-.+..+|.+||++.
T Consensus 74 ~~~d~vQLHG~e~----~-~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~ 131 (207)
T PRK13958 74 TSINTIQLHGTES----I-DFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTP 131 (207)
T ss_pred CCCCEEEECCCCC----H-HHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCC
Confidence 3457888877522 2 233443321 135555443211111111222335899999974
No 179
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=46.39 E-value=54 Score=29.09 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=56.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
.+.+..++++|++.|.++..+ .+..+.+.++..+ .+.-|.. .+ +. ++.+.+.. .+++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~----------~~~~~~~--l~--~~--~~~~~a~~--~gad~v 85 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKEL----------CRRYGVP--LI--VN--DRVDLALA--VGADGV 85 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH----------HHHhCCe--EE--Ee--ChHHHHHH--cCCCEE
Confidence 467889999999999886432 2222222222111 0111211 12 11 33333332 245666
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+...+ .|.+. +..+.+.+..+-..+.|.+|++.+ .+.|+|-|.+.
T Consensus 86 h~~~~~---~~~~~-~~~~~~~~~~~g~~~~t~~e~~~a---~~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDD---LPVAD-ARALLGPDAIIGLSTHTLEEAAAA---LAAGADYVGVG 131 (212)
T ss_pred ecCccc---CCHHH-HHHHcCCCCEEEEeCCCHHHHHHH---hHcCCCEEEEC
Confidence 664433 33332 333444555677788888887554 47899999874
No 180
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.39 E-value=1.2e+02 Score=28.72 Aligned_cols=122 Identities=7% Similarity=-0.013 Sum_probs=60.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eee-eeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i~--~i~-~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (366)
++-+-+...++.|++.+++... +.++.+++..-- +|- -+-..+|++.....+.- .=.++.+.-......
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~----~~~~~~~~~~~~~~~- 160 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEED----TELNLFSFVRQLSDI- 160 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCccc----CCCCHHHHHHHHHHc-
Confidence 6899999999999999999863 445555554321 111 12223332221111000 001122221111111
Q ss_pred CCCeEEEeCCCC----e--eee-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 132 QAENIVIDLPDW----Q--VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 132 ~~~~vvv~~~DW----~--iIP-lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
....+|+..-+= + -.+ ++.+.+. .+..+++ .+.+.+|.+.++ +.|+|||++-+
T Consensus 161 g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~---~~G~~~vivG~ 222 (234)
T PRK13587 161 PLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLA---SLNVHAAIIGK 222 (234)
T ss_pred CCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHH---HcCCCEEEEhH
Confidence 234555533321 1 122 3344332 2334554 479999999876 46999999865
No 181
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.36 E-value=32 Score=32.01 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=27.5
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+-+.+++|| .+.+.+..+++.|+|+++.+..
T Consensus 216 ~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 216 KKGLLVHPYTVNEKADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEeCCH
Confidence 4667899999 5799999999999999998653
No 182
>COG4697 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.34 E-value=31 Score=34.96 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=46.2
Q ss_pred EEEEEEEcCCcceE-----EEeecC-----CCCCCceEEEeccCc--------------eEEEEeeccccCCCC------
Q 017770 219 TVTRVDVAGMGDRV-----CVDLCS-----LMRPGEGLLVGSFAR--------------GLFLVHSECLESNYI------ 268 (366)
Q Consensus 219 tVt~V~~vGmGDRV-----CVDtcS-----ll~~GEGmLVGS~S~--------------glFLVhsEt~es~Yv------ 268 (366)
.|..+.-.|++.|. ||||-| +--.|||++.|-+-. ++|.-.+|.-+-|.-
T Consensus 177 ~i~d~a~Fg~~~~~~p~v~~id~esg~~~~~~~DGe~l~~~~~gA~~~~~~r~~a~~~Ggf~v~~pe~g~ep~f~r~~df 256 (319)
T COG4697 177 DISDKATFGLLLRIDPGVPQIDTESGAIFGMALDGEGLYIGASGANHTGVYRYRAGDGGGFAVPVPELGREPRFPRRIDF 256 (319)
T ss_pred eeeeeeeeeeecccCCCceeEeecccccccccccCCceeeccccceeeeEEEEEEecCceEEecCcccCCCccceEEEEe
Confidence 34555556777664 899876 445789999886432 344446676655533
Q ss_pred --CCCCeeeecCCceeEEEecCC
Q 017770 269 --ASRPFRVNAGPVHAYVLVPGG 289 (366)
Q Consensus 269 --a~RPFRVNAGaVHaYv~~Pgg 289 (366)
+--|||+||+..--=++.|-+
T Consensus 257 ~~~YsPtr~nal~fGGgvli~Fn 279 (319)
T COG4697 257 HGSYSPTRGNALWFGGGVLIGFN 279 (319)
T ss_pred cCccCCcccccceecceeeeccc
Confidence 234999999988776666543
No 183
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.90 E-value=57 Score=28.77 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+.+..|.+.|+|++++.....+...+.-+. +.+.|..++..+.-.++ ++.+.......+++.+.
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~--~~~~~~~~~~~d~i~~~ 134 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEATDHLHRTIQL-------------IKELGMKAGVALNPGTP--VEVLEPYLDEVDLVLVM 134 (211)
T ss_pred HHHHHHHHHcCCCEEEECccchhhHHHHHHH-------------HHHCCCeEEEEecCCCC--HHHHHHHHhhCCEEEEE
Q ss_pred CCC-------CeeeehhhhhhcccCCC----ceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 140 LPD-------WQVIPAENIVASFQGSG----KTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 140 ~~D-------W~iIPlENliA~~q~~~----~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
... |..-.+|++-....... ..-+....-... +.+-++++.|+|||++
T Consensus 135 ~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iiv 193 (211)
T cd00429 135 SVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVA 193 (211)
T ss_pred EECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEE
No 184
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=45.54 E-value=26 Score=34.21 Aligned_cols=164 Identities=14% Similarity=0.194 Sum_probs=97.2
Q ss_pred chhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~------~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
-.++...--+.|+.++=+-.| +.+..+...+.-.+ |+.-+|. |-++.++.++.. .+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~-PvL~KDF---------------Iid~~QI~ea~~--~G 124 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKI-PVLRKDF---------------ILDEIQIREARA--FG 124 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCC-CEEeccc---------------cCCHHHHHHHHH--cC
Confidence 356677777888998644432 12333333332111 4332322 456777666554 46
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccce
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNL 212 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~ 212 (366)
+|-+++...--+--=|++++..++.-+-..+.+|.|.+|++.++. .|++-|-+...|.....--.+.. ..-
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~---~ga~iiGINnRdL~t~~vd~~~~------~~L 195 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD---CGAEIIGINTRDLDTFQIHQNLV------EEV 195 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh---CCCCEEEEeCCCCccceECHHHH------HHH
Confidence 677777665444334889999888888899999999999998654 69999999888765321000000 001
Q ss_pred eeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc
Q 017770 213 LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF 251 (366)
Q Consensus 213 l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~ 251 (366)
.++.+..+..|..=|+..+--+.-.. +--.|+|||.+
T Consensus 196 ~~~ip~~~~~IsESGI~t~~d~~~l~--~~~davLvG~~ 232 (247)
T PRK13957 196 AAFLPPNIVKVGESGIESRSDLDKFR--KLVDAALIGTY 232 (247)
T ss_pred HhhCCCCcEEEEcCCCCCHHHHHHHH--HhCCEEEECHH
Confidence 22233455667777877654333322 22578999875
No 185
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=45.51 E-value=1.3e+02 Score=27.32 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=53.7
Q ss_pred eeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCeEEEeCCC-Cee---eehhhhhhccc---CCCceEEE
Q 017770 93 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-WQV---IPAENIVASFQ---GSGKTVFA 164 (366)
Q Consensus 93 i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~D-W~i---IPlENliA~~q---~~~~~l~a 164 (366)
|..|.+.+|..+... |++--......++.++-+.... ...+.+.+...+ +.- .-. .+++++- +-+..+-.
T Consensus 3 ip~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~-~g~d~l~v~dl~~~~~~~~~~~-~~i~~i~~~~~~pv~~~G 80 (234)
T cd04732 3 IPAIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEE-AGAKWLHVVDLDGAKGGEPVNL-ELIEEIVKAVGIPVQVGG 80 (234)
T ss_pred EEEEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHH-cCCCEEEEECCCccccCCCCCH-HHHHHHHHhcCCCEEEeC
Confidence 444666777766432 2221122334566655554433 345555554332 200 001 1222221 12333445
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.++++++|+.++ +.|+|.|++.+.-..+...++++.
T Consensus 81 gI~~~e~~~~~~---~~Gad~vvigs~~l~dp~~~~~i~ 116 (234)
T cd04732 81 GIRSLEDIERLL---DLGVSRVIIGTAAVKNPELVKELL 116 (234)
T ss_pred CcCCHHHHHHHH---HcCCCEEEECchHHhChHHHHHHH
Confidence 778888888776 479999999886544433344444
No 186
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=45.40 E-value=18 Score=37.06 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=30.7
Q ss_pred EEEcCCHHHHH-HHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017770 163 FAISKTPSEAQ-IFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (366)
Q Consensus 163 ~a~v~~~~eA~-~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (366)
.+.-.+.+|.+ ..-.+||.|+|+||..|.|.+.+++|..+
T Consensus 8 ~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni 48 (376)
T COG1465 8 LAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNI 48 (376)
T ss_pred EcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCce
Confidence 33344667774 44568999999999999999999988653
No 187
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=45.27 E-value=28 Score=34.61 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l 87 (366)
...+++++|| .+.+.|...++.|+|+|+.+. .++..++
T Consensus 243 ~~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (315)
T cd08609 243 KDNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA--CQLLKDM 281 (315)
T ss_pred HCCCEEEEECCCCHHHHHHHHhcCCCEEEcCC--HHHHHHh
Confidence 3567899999 569999999999999999765 4444433
No 188
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=45.24 E-value=30 Score=34.49 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l 87 (366)
...+++++|| .+.+.|...++.|+|+++.+.. +...++
T Consensus 243 ~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~P--~~l~~~ 281 (316)
T cd08610 243 AANIHTNVYVINEPWLFSLAWCSGIHSVTTNNI--HLLKQL 281 (316)
T ss_pred HCCCEEEEECCCCHHHHHHHHhCCcCEEEeCCH--HHHHHh
Confidence 3567899999 5689999999999999998653 444433
No 189
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.19 E-value=1.7e+02 Score=27.83 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=59.3
Q ss_pred chhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE----Eec--Chhhhhh
Q 017770 59 SKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII----EVS--TPQELQQ 125 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~~----~v~--~~ed~e~ 125 (366)
+-+-+...++.|++.+++... +.++.+++.+- ..+-.+-+.+|. .|. .-.+. +.. ++.++-.
T Consensus 85 s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~-~~v~~~gw~~~~~~~~~e~~~ 159 (258)
T PRK01033 85 TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGK-FDVYTHNGTKKLKKDPLELAK 159 (258)
T ss_pred CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCc-EEEEEcCCeecCCCCHHHHHH
Confidence 566677788999999998863 34444444321 112122223330 111 00110 011 2222222
Q ss_pred hccccCCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 126 LQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 126 ~~~~~~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
.... ..++.+++... ||..| +.+.. ..+..|++. +.+.+|++.+++ +.|+|||++..
T Consensus 160 ~~~~-~g~~~ii~~~i~~~G~~~G~d~~~i--~~~~~---~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 160 EYEA-LGAGEILLNSIDRDGTMKGYDLELL--KSFRN---ALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHHH-cCCCEEEEEccCCCCCcCCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 2211 23567777533 34443 22222 234456654 788898887764 45999998754
No 190
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.15 E-value=42 Score=34.95 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=46.1
Q ss_pred Chhhhhhhcccc-CCCCeEEEeCCCCeeeehhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 119 TPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 119 ~~ed~e~~~~~~-~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l-~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
++++++++.... ..+|.++|+..+-.-..+.++|..+... +..| .+.+.+.++|+.+.. .|+|+|.+-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG 222 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVG 222 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEEC
Confidence 355555544433 4599999999876656677777766543 2334 448888888887654 699999864
No 191
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=44.92 E-value=24 Score=36.15 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=42.3
Q ss_pred ChhhhhhhccccCC---CCeEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 017770 119 TPQELQQLQPADGQ---AENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 119 ~~ed~e~~~~~~~~---~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.++|.+++...... .|+++|+...=--.=.-+.|+.+... +..|++. +-++++|+.+ ++.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~L---i~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEEL---ILSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHH---HHcCCCEEEEc
Confidence 46677776666544 79999987632222222333333322 3467777 8888888755 46799999866
No 192
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=44.62 E-value=1.1e+02 Score=26.03 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..+.++++..-...-.+ .++..++. ....++... ...+......+++.|+++.+.+|-+++++.+..
T Consensus 44 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i 112 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGL-HLLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHARI 112 (222)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Confidence 35677775432222222 23333332 233455443 344556677889999999999999998876543
No 193
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.55 E-value=87 Score=29.90 Aligned_cols=113 Identities=21% Similarity=0.154 Sum_probs=65.6
Q ss_pred hHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+..+|.+.|+.++=... +|...+++.-++-+|..+ +. ..+..+ +| .--+-++.+++.. ..++.+-++
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~--K~--~y~~~~----V~-ITPT~~ev~~l~~--aGadIIAlD 71 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGII--KR--DYPDSD----VY-ITPTLKEVDALAE--AGADIIALD 71 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE---B---SBTTSS-------BS-SHHHHHHHHH--CT-SEEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEE--ec--cCCCCC----eE-ECCCHHHHHHHHH--cCCCEEEEe
Confidence 356789999999987764 334444444444333321 11 111111 22 2235666666665 478888888
Q ss_pred CCC-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017770 140 LPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 140 ~~D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (366)
.++ ..--+|+.++.+++....-+.|-+.+.|||+.+ .+.|+|=|=
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 762 122889999999988887899999999998765 578998654
No 194
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.46 E-value=62 Score=31.37 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
...|..+++|.+||+.++ +.|+|.|+|.+=.+++++++.+.+
T Consensus 181 ~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred CCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 357999999999988775 579999999999999998877765
No 195
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=44.28 E-value=32 Score=30.68 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=35.0
Q ss_pred CCceeEEEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceEEEE
Q 017770 278 GPVHAYVLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVE 331 (366)
Q Consensus 278 GaVHaYv~~P--ggkT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE-~RPLlLIe 331 (366)
|-+.=++..- |.-|+||.. |+.||.|.+....|+.. .+-+ .+|+++|=
T Consensus 54 ~~~~~~i~~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~------~~~~~~~~~llia 105 (224)
T cd06187 54 GEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFY------LRRDHDRPVLCIA 105 (224)
T ss_pred CEEEEEEEeCCCCcchHHHhhcCccCCEEEEeCCccceE------ecCCCCCCEEEEe
Confidence 4556666664 556899987 99999999999988753 2223 57888764
No 196
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.20 E-value=85 Score=28.87 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc---hhhhhhcccee---ee-eeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIA---LL-DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~---~i-~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
.+-+-+..+++.|++.+++.... .+...++.+.- ++ -.+...+|...- +|..-. .-.++.++-+....
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~~~~~~~- 160 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVI-KGWTEK---TGYTPVEAAKRFEE- 160 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEE-CCCccc---CCCCHHHHHHHHHH-
Confidence 45677899999999999998632 33444443331 11 112223332220 010000 00123332222222
Q ss_pred CCCCeEEEeCC--C--Ceeeeh---hhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 131 GQAENIVIDLP--D--WQVIPA---ENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 131 ~~~~~vvv~~~--D--W~iIPl---ENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..++.+++... | .+-+.+ +.+.... .-+.-....+.+.++++. .++.|+|||++.+-
T Consensus 161 ~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~---~~~~Ga~gv~vgsa 224 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRA---LKEAGAAGVVVGSA 224 (241)
T ss_pred cCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHH---HHHcCCCEEEEEHH
Confidence 34566666433 1 122222 3333322 122233345788999886 36679999998653
No 197
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=44.19 E-value=33 Score=33.22 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
+....+++|| .+++.|...++-|+|+|+.+..
T Consensus 259 ~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 259 KRGIQVYGWVLNDEEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HCCCEEEEeecCCHHHHHHHHhcCCCEEEeCCH
Confidence 3567899999 5799999999999999998654
No 198
>PRK08187 pyruvate kinase; Validated
Probab=44.10 E-value=91 Score=33.36 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=74.8
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 017770 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--- 132 (366)
+.+++-+..+++ ++|.|.++. ++++.+..+..+- . ..++. .++.+..+..|.+++-++.+..-...
T Consensus 312 ekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L--~---~~~~~----~~~~~~IIaKIET~~gv~Nl~eI~~~ad~ 381 (493)
T PRK08187 312 EKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAAL--A---ARRPD----DWRKLGLVLKIETPRAVANLPELIVQAAG 381 (493)
T ss_pred HhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHH--H---HhCCC----CCCCCeEEEEECCHHHHHHHHHHHHHhCc
Confidence 346777888888 799988885 3344444443330 0 00000 02356788899998888776554422
Q ss_pred --CCeEEEeCCC------Ceeeeh--hhhhhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 133 --AENIVIDLPD------WQVIPA--ENIVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 133 --~~~vvv~~~D------W~iIPl--ENliA~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..-+++-..| ++-.|. +.||.+....+.-+|. ...+-.|+--++.+ .|+|+|+|...
T Consensus 382 ~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G 459 (493)
T PRK08187 382 RQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKG 459 (493)
T ss_pred CCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCC
Confidence 2356664443 333332 2233333333333332 12233444444443 89999999955
Q ss_pred C--HHHHHHHHHhhcc
Q 017770 192 D--VKAVLALKEYFDG 205 (366)
Q Consensus 192 d--~~ev~~l~~~~~~ 205 (366)
. .+.|+-|.+++.+
T Consensus 460 ~ypveaV~~l~~I~~~ 475 (493)
T PRK08187 460 PYLVEAVTFLDDLLAR 475 (493)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4 4677777777744
No 199
>PHA00440 host protein H-NS-interacting protein
Probab=43.81 E-value=14 Score=31.91 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 017770 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (366)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (366)
|+-+.+....+|-+|.||++--.---+--..+|+.... -..+..+...||||..+
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E-~~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE-STDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHh-hccCcceeecCceEEec
Confidence 89999999999999999987322111111223333322 13456689999999875
No 200
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.63 E-value=1.4e+02 Score=28.28 Aligned_cols=121 Identities=21% Similarity=0.155 Sum_probs=71.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.+..+.|++.+=++-...+-.+.+..+.. ..+ +..++ -..|.++++.+.+.. ..+++++.
T Consensus 29 a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~----------~~p--~~~IG-AGTVl~~~~a~~a~~--aGA~Fivs 93 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK----------EVP--EALIG-AGTVLNPEQLAQAIE--AGAQFIVS 93 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH----------HCC--CCEEE-EeeccCHHHHHHHHH--cCCCEEEC
Confidence 3567777777788866554322111111122211 011 23333 336788887666554 36778777
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~ 203 (366)
-..+. .++...+..+--++-.+.|+.| +..+++.|+|-|-+-|.+ ++-++.|+..+
T Consensus 94 P~~~~------~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~ 153 (212)
T PRK05718 94 PGLTP------PLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEASGGVKMLKALAGPF 153 (212)
T ss_pred CCCCH------HHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhccCHHHHHHHhccC
Confidence 54443 4555555556667779999999 456889999999998865 45555555544
No 201
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.49 E-value=17 Score=35.03 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=55.8
Q ss_pred CCeeeecCCceeEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEeeeeEEEeccceE--EEEEEeec---------
Q 017770 271 RPFRVNAGPVHAYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI--LVEAKALA--------- 336 (366)
Q Consensus 271 RPFRVNAGaVHaYv~~PggkT~YLS---EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLl--LIeAe~~~--------- 336 (366)
|-|--+.-..+.|+..+++..+||- -|+.||++.+.|.+|....+.+= ++.++... ++|...+.
T Consensus 5 ~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i~--~~~kk~~~~~i~~~~~~~~e~~~~i~l 82 (246)
T COG1385 5 RLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEIT--KIGKKEALLKIVEQLEPNPELPLKITL 82 (246)
T ss_pred eEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEEe--ecCCCceEEEEEeecccCCCCCceEEE
Confidence 4444455667889999999999998 78999999999999998876432 23344322 22222210
Q ss_pred ---cCCCceeeEEEeeccccCCCce
Q 017770 337 ---LAGHSEPSLFLWFLVCTSSSLI 358 (366)
Q Consensus 337 ---~~~g~~~sviLQnA~~~~~~~~ 358 (366)
-..|++...++|.|.+++-+.+
T Consensus 83 ~~~i~kg~k~d~iiqkatELGv~~i 107 (246)
T COG1385 83 AQAIPKGDKLELIIQKATELGVSKI 107 (246)
T ss_pred EEEcCccHHHHHHHHHHHHhCcceE
Confidence 0034555667777777775544
No 202
>PRK15447 putative protease; Provisional
Probab=43.26 E-value=1.5e+02 Score=28.98 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred Ee-CchhHHHHHH-HhCCcEEEEcCcchhhhhhccceeeeeeeee-cCCccccCCCCeeEEEE-Ee-cChhhhhhhcccc
Q 017770 56 WT-ESKQVMTAAV-ERGWNTFVFLSENQQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSII-EV-STPQELQQLQPAD 130 (366)
Q Consensus 56 w~-~~K~~vT~AL-EsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~~-~v-~~~ed~e~~~~~~ 130 (366)
|- .+.+-+-+|+ ++|+|+|.+..+. ..... . ++.--+ +.-+.+.+.||++.... .| ..+++++.+....
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~--~~~R~-~---f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l 85 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETV--CSKRR-E---LKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLV 85 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCcc--CCCcc-C---CCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHH
Confidence 55 5788888888 6699999997431 00000 0 110000 11123456677765544 33 3456666665544
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE----EcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHHh
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA----ISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKEY 202 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a----~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~~l~~~ 202 (366)
...... |...||..+- ++..+ +-.+.+ -+-|..-++.+ .+.|+++|+|..+ +..||+++.+.
T Consensus 86 ~~~~~~-v~v~d~g~l~---~~~e~---~~~l~~d~~lni~N~~a~~~l---~~~G~~rv~ls~ELsl~eI~~i~~~ 152 (301)
T PRK15447 86 ENGEFL-VEANDLGAVR---LLAER---GLPFVAGPALNCYNAATLALL---ARLGATRWCMPVELSRDWLANLLAQ 152 (301)
T ss_pred hcCCCE-EEEeCHHHHH---HHHhc---CCCEEEecccccCCHHHHHHH---HHcCCcEEEECCcCCHHHHHHHHHh
Confidence 442222 2245666552 22221 223333 23555555544 4579999999999 56888777554
No 203
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.95 E-value=1.7e+02 Score=27.92 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceee-eee--eeecCC--------------------------
Q 017770 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL-LDP--LFIKEG-------------------------- 101 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~vv~~~~-----~~~~~~l~~i~~-i~~--l~~~~g-------------------------- 101 (366)
.+.+-+.+|.+.|+| +|||.+.. .+.++++.+-.. +.. ++.+..
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Q ss_pred --ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC------------CCeeeehhhhhhcccCCCceEEEEcC
Q 017770 102 --EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISK 167 (366)
Q Consensus 102 --~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~------------DW~iIPlENliA~~q~~~~~l~a~v~ 167 (366)
.+...-+.++--.+.+....+++........++.++++.. ||+.+|-= .....-++|.==
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL 163 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCC
Q ss_pred CHHHHHHHHHHhh-cccC
Q 017770 168 TPSEAQIFLEALE-QGLG 184 (366)
Q Consensus 168 ~~~eA~~al~~LE-~G~D 184 (366)
|++..+.++...- .|+|
T Consensus 164 ~p~NV~~ai~~~~p~gvD 181 (208)
T COG0135 164 NPDNVAEAIALGPPYGVD 181 (208)
T ss_pred CHHHHHHHHHhcCCceEE
No 204
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=42.86 E-value=30 Score=31.55 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=34.5
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEE-eccceEEEEEE
Q 017770 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKI-ESRPLILVEAK 333 (366)
Q Consensus 278 GaVHaYv~~-P-ggkT~YLSEL~sG~eVLvV-d~~G~tR~a~VGRvKI-E~RPLlLIeAe 333 (366)
|-+.=++.. + |.-|+||.+|+.||.|.+- ...|....- . . ..+|+++|=+-
T Consensus 56 ~~i~~~i~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~---~--~~~~~~~vlIagG 110 (241)
T cd06195 56 ENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLD---E--VPPGKRLWLLATG 110 (241)
T ss_pred CeEEEEEEEecCCCCchHHhcCCCCCEEEECcCCCCceeec---C--CCCCceEEEEeec
Confidence 444444442 4 5568899999999999998 888875321 1 1 24788887544
No 205
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.75 E-value=45 Score=31.40 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.4
Q ss_pred hhhhhhcccCCCceEEEE-----cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 017770 148 AENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (366)
Q Consensus 148 lENliA~~q~~~~~l~a~-----v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~ 197 (366)
-+.+|..++..+-.+++- +++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l---~~~Gvdgii--TD~p~~~~ 261 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVY---LELGVDCIC--PNDPVLLV 261 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHH---HHcCCCEEE--cCCHHHHH
Confidence 367788888877787776 4667777665 478999976 67777543
No 206
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=42.71 E-value=62 Score=31.56 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..|..++.|.+||..+ ++.|+|.|.|.+=++.+++++.+.+
T Consensus 184 ~~IgVev~t~eea~~A---~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 184 KKIVVEVDSLEEALAA---AEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred CeEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4688999999998876 4799999999999998887766654
No 207
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.63 E-value=2.6e+02 Score=25.90 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=62.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~---------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
-.+++...-+.|++.+++-.=+ .+.++++.+... -|+... .-|.+.++.+.+...
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~-~pv~~~---------------GGI~s~~d~~~~l~~ 92 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF-IPLTVG---------------GGIRSLEDARRLLRA 92 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC-CCEEEe---------------CCCCCHHHHHHHHHc
Confidence 3577788889999987665422 223333333211 133333 346788887776542
Q ss_pred cCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEc--------------------CCHHHHHHHHHHhhcccCeE
Q 017770 130 DGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAIS--------------------KTPSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 130 ~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v--------------------~~~~eA~~al~~LE~G~DGV 186 (366)
.++.+++... +|.+ +++++.++... +++..+ .+.+....+....+.|+|.+
T Consensus 93 --G~~~v~ig~~~~~~p~~--~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 93 --GADKVSINSAAVENPEL--IREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred --CCceEEECchhhhChHH--HHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 4677777543 3332 45566655221 233222 13344566677789999999
Q ss_pred EEecCC
Q 017770 187 VLKVED 192 (366)
Q Consensus 187 vl~~~d 192 (366)
+++.-+
T Consensus 167 ~v~~i~ 172 (243)
T cd04731 167 LLTSMD 172 (243)
T ss_pred EEeccC
Confidence 995543
No 208
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=42.59 E-value=30 Score=30.95 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCceeEEEec--CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 278 GPVHAYVLVP--GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~P--ggkT~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|-+.=++..- |.-|+||. .|+.||+|.+-...|.... . .-+.+|+++|=.
T Consensus 59 ~~l~~~vk~~~~G~~s~~l~~~~~~G~~v~i~gP~G~f~~---~--~~~~~~~vlIag 111 (231)
T cd06215 59 DSLSITVKRVPGGLVSNWLHDNLKVGDELWASGPAGEFTL---I--DHPADKLLLLSA 111 (231)
T ss_pred CcEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCcceeEe---C--CCCCCcEEEEec
Confidence 3355566554 66799996 7999999999988886522 1 112588888744
No 209
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=42.35 E-value=1.1e+02 Score=30.18 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=58.4
Q ss_pred hHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
+.+..+++.+++.+.+.-.. .+.++.+..- | +.++..+.+.++...+.. ...|.+|+
T Consensus 104 ~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-----------------g--i~v~~~v~s~~~A~~a~~--~G~D~iv~ 162 (330)
T PF03060_consen 104 EQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-----------------G--IKVIPQVTSVREARKAAK--AGADAIVA 162 (330)
T ss_dssp HHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-----------------T---EEEEEESSHHHHHHHHH--TT-SEEEE
T ss_pred cccccccccceEEEEeecccchHHHHHHHHHc-----------------C--CccccccCCHHHHHHhhh--cCCCEEEE
Confidence 34555556666677775332 2333333322 3 236668899998665544 35899998
Q ss_pred eCC------CC---eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 DLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~~~------DW---~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+. +. ....|...+.+.- +.-|++ +.-.-+.+-+..+|..|+|||.+-|.
T Consensus 163 qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVia-AGGI~dg~~iaaal~lGA~gV~~GTr 221 (330)
T PF03060_consen 163 QGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIA-AGGIADGRGIAAALALGADGVQMGTR 221 (330)
T ss_dssp E-TTSSEE---SSG-HHHHHHHHHHH---SS-EEE-ESS--SHHHHHHHHHCT-SEEEESHH
T ss_pred eccccCCCCCccccceeeHHHHHhhhc--CCcEEE-ecCcCCHHHHHHHHHcCCCEeecCCe
Confidence 763 21 2344444444433 234555 67777888888999999999998653
No 210
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=42.20 E-value=62 Score=31.73 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=82.9
Q ss_pred EEEEeC---chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChh
Q 017770 53 VWIWTE---SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQ 121 (366)
Q Consensus 53 vWiw~~---~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e 121 (366)
|.+--+ +.+.+..|++.|++.++++.-+ .++.+++-.+..-. .+-.+=|.+-..++..++.-...+++|
T Consensus 77 v~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~e 156 (282)
T TIGR01859 77 VALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPD 156 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHH
Confidence 666543 7899999999999999998543 23333333222110 111111111011111111012357898
Q ss_pred hhhhhccccCCCCeEEEe-------CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH-
Q 017770 122 ELQQLQPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV- 193 (366)
Q Consensus 122 d~e~~~~~~~~~~~vvv~-------~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~- 193 (366)
+..++.... ..|++.+. +.....+.+|.|-.--+..+.-|++.=.|--..+.+-.+.+.|+++|=+.|+=-
T Consensus 157 ea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 157 EAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 877776532 57888863 233455667765332222244566666444444456778899999999999842
Q ss_pred HHHHHHHHhh
Q 017770 194 KAVLALKEYF 203 (366)
Q Consensus 194 ~ev~~l~~~~ 203 (366)
.-...+++++
T Consensus 236 a~~~~~~~~~ 245 (282)
T TIGR01859 236 AFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHH
Confidence 3344455555
No 211
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=42.12 E-value=1.2e+02 Score=25.66 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=40.0
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
...+.++++..-...-.+ .++..++. ....++... +..+......+++.|+++.+.+|-+..++....
T Consensus 43 ~~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 43 APYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 346777775432221111 22333222 234455544 444556667889999999999999988775543
No 212
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=42.01 E-value=1.4e+02 Score=28.75 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=66.7
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcC----cc--------hhhhhhccce-eeeeeeeecCCccccCCCCeeEEEEEec-
Q 017770 53 VWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWSTI-ALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (366)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~~vv~~----~~--------~~~~~~l~~i-~~i~~l~~~~g~~~~~~gk~v~~~~~v~- 118 (366)
+++.-.+.+.+ --|+|+++|++ .| .+-+..++++ .+.. .+..|.++=..|..++.+....
T Consensus 57 vilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e--~i~~gYiv~~~~~~v~~v~~a~~ 130 (219)
T cd02812 57 VILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLE--LIPEGYLVLNPDSTVARVTGAKT 130 (219)
T ss_pred EEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcccccccc--ccceEEEEECCCCceeeeeccCc
Confidence 55555555555 36799999985 22 2233333331 1111 1223443333344566554444
Q ss_pred --Chhhhhhhcc---ccCCCCeEEEeCCCCeeeehhhhhhcccCC-Cce--EEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 119 --TPQELQQLQP---ADGQAENIVIDLPDWQVIPAENIVASFQGS-GKT--VFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 119 --~~ed~e~~~~---~~~~~~~vvv~~~DW~iIPlENliA~~q~~-~~~--l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++|+....+. .++ ...+-++..+=. +|.|.+-+-.+.. +.. +=..++|.++|+.+ ++.|+|+|++-+
T Consensus 131 ~~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVVGs 205 (219)
T cd02812 131 DLKPEDAAAYALAAEYLG-MPIVYLEYSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVVGN 205 (219)
T ss_pred CCCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 3444443222 233 566666643322 6655443222222 233 44467888888875 578999999987
Q ss_pred C
Q 017770 191 E 191 (366)
Q Consensus 191 ~ 191 (366)
-
T Consensus 206 a 206 (219)
T cd02812 206 I 206 (219)
T ss_pred h
Confidence 3
No 213
>PLN02623 pyruvate kinase
Probab=42.00 E-value=36 Score=37.18 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=50.6
Q ss_pred CCCCeEEEeCC-C-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 131 GQAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 131 ~~~~~vvv~~~-D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
.+.|++-+.|- + =.|..+.++++.. +.+..|++...+.+--+-+-++++ |+|||++.+.|.+
T Consensus 290 ~~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 290 NKVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 35788888775 2 2467778888774 456789999999999999999999 9999999999863
No 214
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.98 E-value=1.7e+02 Score=27.44 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=57.8
Q ss_pred eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC----eeeehhhhhhcc-cCCCceEE--EE
Q 017770 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASF-QGSGKTVF--AI 165 (366)
Q Consensus 93 i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~-q~~~~~l~--a~ 165 (366)
|..|.+.+|..+..... .......++.++-+..... .++.+.+...|= +-..++.+ .++ +..+..++ ..
T Consensus 7 ip~idl~~g~~V~~~~~--~~~~~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i-~~i~~~~~ipv~~~GG 82 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNF--VNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVV-ERVAEQVFIPLTVGGG 82 (253)
T ss_pred EEEEEEECCEEEEeEEe--cceeecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHH-HHHHHhCCCCEEeeCC
Confidence 44466677766653221 1112344676666655543 355555544432 22333333 222 22223344 47
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 017770 166 SKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (366)
Q Consensus 166 v~~~~eA~~al~~LE~G~DGVvl~~---~d~~ev~~l~~~~ 203 (366)
+++.++++.++. .|+|+|++.+ .||+.+.++.+.+
T Consensus 83 i~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 83 IRSVEDARRLLR---AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 889999888876 6999999999 5666665554443
No 215
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=41.94 E-value=42 Score=35.63 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=43.4
Q ss_pred Chhhhhhhcccc-CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 119 TPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 119 ~~ed~e~~~~~~-~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+++.|++.... ..+|.++++..+=.-+=.-+.|..+... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i~vg 317 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGLRVG 317 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 355566655544 3589999988752222222445554432 345655 699999988766 5899999874
No 216
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.94 E-value=1.4e+02 Score=31.26 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
+..+.+.+-+|.|++.++++..|......+..+..+.. . . .+..+ ....|.+.|+...+... .++.+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~---~----~--p~~~v-i~g~v~t~e~a~~l~~a--Gad~i~ 295 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA---K----Y--PDVQI-IAGNVATAEAARALIEA--GADAVK 295 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh---h----C--CCCCE-EEeccCCHHHHHHHHHc--CCCEEE
Confidence 34688888999999988887543222222222222211 0 0 01222 22577888886666643 566765
Q ss_pred Ee-----------CCCCeeeehhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 138 ID-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 138 v~-----------~~DW~iIPlENl---iA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+- ..+|-+=.++-| ..+++..+..||+ .+++..|+..+ |..|+|.|++-+-
T Consensus 296 vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA---la~GA~~v~~G~~---------- 362 (486)
T PRK05567 296 VGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA---LAAGASAVMLGSM---------- 362 (486)
T ss_pred ECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH---HHhCCCEEEECcc----------
Confidence 51 135543333333 3333344678999 89999987665 5579999997653
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceE
Q 017770 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRV 232 (366)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRV 232 (366)
++...++.+.+-....+--+ .--|||-.-
T Consensus 363 -~a~~~e~pg~~~~~~g~~~k-~y~gm~s~~ 391 (486)
T PRK05567 363 -LAGTEEAPGEVELYQGRSYK-SYRGMGSLG 391 (486)
T ss_pred -ccccccCCCceEEECCEEEE-EEeccchHH
Confidence 33334444444333222222 244888643
No 217
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.68 E-value=59 Score=31.30 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=43.1
Q ss_pred cChhhhhhhccccC---CCCeEEEeCC-CC-eeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 118 STPQELQQLQPADG---QAENIVIDLP-DW-QVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 118 ~~~ed~e~~~~~~~---~~~~vvv~~~-DW-~iIPlENliA~~q---~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+++|+...+.+.+ +.+.+-++.. .+ .-+|.|.+=+-.+ +..-.+=..++|.++|+.++ +.|+|+|++-
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~---~aGAD~VVVG 208 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA---EAGADTIVTG 208 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEC
Confidence 35666555444433 3578888843 33 4466665422211 22333455788999988755 6699999998
Q ss_pred cC
Q 017770 190 VE 191 (366)
Q Consensus 190 ~~ 191 (366)
+-
T Consensus 209 s~ 210 (223)
T TIGR01768 209 NV 210 (223)
T ss_pred cH
Confidence 74
No 218
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.49 E-value=2.2e+02 Score=26.87 Aligned_cols=128 Identities=15% Similarity=0.025 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhccc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPA 129 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~-------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~ 129 (366)
.+.+-+..+++.|++.+++...- .+..+..++=..+--+-..+|.+.....-.+.+..-.. +.++...++..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Q ss_pred cCC--CCeEEEeCCCC----eeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcc-cCeEEE
Q 017770 130 DGQ--AENIVIDLPDW----QVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQG-LGGIVL 188 (366)
Q Consensus 130 ~~~--~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~G-~DGVvl 188 (366)
..+ .+.+++...+= +-..++.+-.-.+..+..+++.= .++++++ ++++.| +|||++
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~ 228 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFY---EAFTKGKADAALA 228 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH---HHHHcCCcceeeE
No 219
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.46 E-value=1.8e+02 Score=25.98 Aligned_cols=90 Identities=13% Similarity=0.018 Sum_probs=52.1
Q ss_pred eEEEEEecChh--hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEE
Q 017770 111 VGSIIEVSTPQ--ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIV 187 (366)
Q Consensus 111 v~~~~~v~~~e--d~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~e-A~~al~~LE~G~DGVv 187 (366)
+..-..+.++. +.+.+.. ..++++++....-. .=++.++...++.+.+++..+.++.+ .+.+..+++.|+|-|-
T Consensus 55 i~~d~k~~d~~~~~~~~~~~--~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 55 VLADLKTMDAGEYEAEQAFA--AGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred EEEEEeeccchHHHHHHHHH--cCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEE
Confidence 33333455665 3333332 45888888776421 11366777777777788877644422 2333444677999888
Q ss_pred EecC---------CHHHHHHHHHhh
Q 017770 188 LKVE---------DVKAVLALKEYF 203 (366)
Q Consensus 188 l~~~---------d~~ev~~l~~~~ 203 (366)
+.|. .++.++++++.+
T Consensus 132 ~~pg~~~~~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 132 VHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred EcCCcCcccCCCCCHHHHHHHHHhc
Confidence 8653 345566665554
No 220
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=41.34 E-value=32 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
.+.+.+++|+ .+++.+..+++.|+|+|+.+
T Consensus 188 ~~G~~v~~wtvn~~~~~~~~~~~Gvd~i~TD 218 (220)
T cd08579 188 QNGKKVYVWTVNDPDDMQRYLAMGVDGIITD 218 (220)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEeCC
Confidence 4678899999 57999999999999998854
No 221
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=41.11 E-value=1.5e+02 Score=26.81 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=37.1
Q ss_pred CCCCeeeecCCc-e----eEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 269 ASRPFRVNAGPV-H----AYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 269 a~RPFRVNAGaV-H----aYv~~-Pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
..|||-+.--+. . =++.. |+| -|.||.. ++.||+|.+....|+... - .-..+|+++|=
T Consensus 50 ~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l---~--~~~~~~~vlia 115 (236)
T cd06210 50 TRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGL---R--ENGLRPRWFVA 115 (236)
T ss_pred cceecccCCCCCCCCEEEEEEEEcCCCccchhhhhCcCCCCEEEEecCcceeee---c--CCCCccEEEEc
Confidence 357777654332 1 12332 444 6899987 999999999999997521 1 12347888764
No 222
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=40.60 E-value=1.1e+02 Score=32.33 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=47.0
Q ss_pred EEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC--eEEEecCC
Q 017770 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG--GIVLKVED 192 (366)
Q Consensus 115 ~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D--GVvl~~~d 192 (366)
-=|.+++|+..+.. + ++-++|-..-.+-=-+...+.+|.... -=|+...+++||+.+.+ .|+| |+++.+.+
T Consensus 217 SGI~t~~d~~~~~~--~-~davLiG~~lm~~~d~~~~~~~L~~~~-vKICGit~~eda~~a~~---~GaD~lGfIf~~~S 289 (454)
T PRK09427 217 SGIYTHAQVRELSP--F-ANGFLIGSSLMAEDDLELAVRKLILGE-NKVCGLTRPQDAKAAYD---AGAVYGGLIFVEKS 289 (454)
T ss_pred CCCCCHHHHHHHHh--c-CCEEEECHHHcCCCCHHHHHHHHhccc-cccCCCCCHHHHHHHHh---CCCCEEeeEeCCCC
Confidence 34788999888742 3 788877333222222233333332222 23688899999987765 6888 77775554
Q ss_pred -----HHHHHHHHH
Q 017770 193 -----VKAVLALKE 201 (366)
Q Consensus 193 -----~~ev~~l~~ 201 (366)
+++++++.+
T Consensus 290 pR~V~~~~a~~i~~ 303 (454)
T PRK09427 290 PRYVSLEQAQEIIA 303 (454)
T ss_pred CCCCCHHHHHHHHH
Confidence 455555444
No 223
>PRK14560 putative RNA-binding protein; Provisional
Probab=40.56 E-value=47 Score=29.62 Aligned_cols=53 Identities=30% Similarity=0.468 Sum_probs=38.6
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017770 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 273 FRVNAGaVH-----aYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPL 327 (366)
+-|+.|++. |-+++||= +.+=.+++.||.|.|++.+ +....-||++++-..-|
T Consensus 79 v~Vd~~a~~~i~~Ga~lm~pGV-~~~~~~~~~Gd~V~I~~~~-~~~~vavG~~~~s~~ei 136 (160)
T PRK14560 79 VVVDAGAVKFVSNGADVMAPGI-VEADEDIKEGDIVFVVEET-HGKPLAVGRALMDGDEM 136 (160)
T ss_pred EEEeccHHHHHHCCCceecCee-eeCCCCCCCCCEEEEEECC-CCeEEEEEEEeeCHHHH
Confidence 778888775 45555543 3555689999999999976 23558999999877554
No 224
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=40.41 E-value=51 Score=29.40 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=23.2
Q ss_pred eeEEEecCCceeeee--eccCCCeEEEEcCCCCe
Q 017770 281 HAYVLVPGGKTCYLS--ELKSGKEVIVVDQKGRQ 312 (366)
Q Consensus 281 HaYv~~PggkT~YLS--EL~sG~eVLvVd~~G~t 312 (366)
|.++..-|..-++.+ ++.+||+|.+|+.+|.+
T Consensus 101 ~g~Vkv~g~~Wra~~~~~l~~G~~V~Vv~v~G~~ 134 (140)
T COG1585 101 RGRVKVEGESWRARSDEDLPAGDRVEVVGVEGAT 134 (140)
T ss_pred eEEEEECCeEeEEecCCCCCCCCEEEEEEeeCCE
Confidence 345555555555544 78899999999999984
No 225
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=40.39 E-value=44 Score=32.80 Aligned_cols=137 Identities=10% Similarity=0.120 Sum_probs=76.8
Q ss_pred EEEEe---CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccC-CCCe-eEEEEEecC
Q 017770 53 VWIWT---ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDS-GDRR-VGSIIEVST 119 (366)
Q Consensus 53 vWiw~---~~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~--~l~~~~g~~~~~-~gk~-v~~~~~v~~ 119 (366)
|.+.- .+.+.+..||+.|++.|.++.-+ .+.++++..+..-. ++-.+.|.+=.. ++.. ++ ...++
T Consensus 77 v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g--~s~t~ 154 (281)
T PRK06806 77 VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE--MLLTS 154 (281)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc--ceeCC
Confidence 66633 47899999999999999998543 33344444333311 122233322111 1111 11 23578
Q ss_pred hhhhhhhccccCCCCeEEEeC-------CCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 120 PQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 120 ~ed~e~~~~~~~~~~~vvv~~-------~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
+++..++... ...||+-+.. .+...|.+|-|=.--+..+.-+++.=.|-=...-+-.+.+.|+++|=+.++=
T Consensus 155 ~eea~~f~~~-tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 155 TTEAKRFAEE-TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATAT 233 (281)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHH
Confidence 9987776654 3578888711 2445566664433222234456666533322233556799999999998873
No 226
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=40.36 E-value=2e+02 Score=26.31 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=49.3
Q ss_pred eeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC-eee--ehhhhhhcc-cCCCc--eEEEEcCC
Q 017770 96 LFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-QVI--PAENIVASF-QGSGK--TVFAISKT 168 (366)
Q Consensus 96 l~~~~g~~~~-~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW-~iI--PlENliA~~-q~~~~--~l~a~v~~ 168 (366)
|.+.+|..++ -+|++-.......+|.++-......+.....|++-... +-. .++. |+++ +.... .+=..+++
T Consensus 5 id~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~-i~~i~~~~~~pi~~ggGI~~ 83 (230)
T TIGR00007 5 IDIKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPV-IKKIVRETGVPVQVGGGIRS 83 (230)
T ss_pred EEeeCCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHH-HHHHHHhcCCCEEEeCCcCC
Confidence 4556676554 22322222222246666555443333334444433333 122 2332 2222 22222 23347788
Q ss_pred HHHHHHHHHHhhcccCeEEEecC---CHHHHHHH
Q 017770 169 PSEAQIFLEALEQGLGGIVLKVE---DVKAVLAL 199 (366)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l 199 (366)
.++++.+++ .|+|.|++.+. |++.+.++
T Consensus 84 ~ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~ 114 (230)
T TIGR00007 84 LEDVEKLLD---LGVDRVIIGTAAVENPDLVKEL 114 (230)
T ss_pred HHHHHHHHH---cCCCEEEEChHHhhCHHHHHHH
Confidence 888887766 79999999864 44444443
No 227
>PRK09483 response regulator; Provisional
Probab=40.07 E-value=1.9e+02 Score=24.64 Aligned_cols=80 Identities=8% Similarity=0.122 Sum_probs=43.1
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
..+.++...... ....|.++++..-... .--.++..++ .....++..... .+......+++.|++|.+.+|.++.
T Consensus 33 ~~~~~~~~~~~~-~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~k~~~~~ 109 (217)
T PRK09483 33 ACCGEDAVKWCR-TNAVDVVLMDMNMPGI-GGLEATRKILRYTPDVKIIMLTVH-TENPLPAKVMQAGAAGYLSKGAAPQ 109 (217)
T ss_pred eCCHHHHHHHHH-hcCCCEEEEeCCCCCC-CHHHHHHHHHHHCCCCeEEEEeCC-CCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 455554333222 2346777774322111 1112333222 223455555433 4455557889999999999999887
Q ss_pred HHHHH
Q 017770 195 AVLAL 199 (366)
Q Consensus 195 ev~~l 199 (366)
++.+.
T Consensus 110 ~l~~~ 114 (217)
T PRK09483 110 EVVSA 114 (217)
T ss_pred HHHHH
Confidence 76554
No 228
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=40.05 E-value=1.8e+02 Score=25.96 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=33.5
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec-cceEEEE
Q 017770 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES-RPLILVE 331 (366)
Q Consensus 278 GaVHaYv~~-P-ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~-RPLlLIe 331 (366)
|-+.=+|.. | |.-|+||..++.||+|.+-...|..... .-.. +|+++|=
T Consensus 60 ~~~~~~v~~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-----~~~~~~~~vlia 111 (234)
T cd06183 60 GYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYK-----PNGKVKHIGMIA 111 (234)
T ss_pred CEEEEEEEECCCCcchhHHhcCCCCCEEEEECCccceeec-----CCCCccEEEEEc
Confidence 445566665 4 5569999999999999998888864221 0112 6787774
No 229
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=40.03 E-value=74 Score=30.04 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=67.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
...+..=.+.|+|.+.|..|.. +..+-+.. +++.|.+.|..+.-.++- +.+.......|.+++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~--------------ik~~g~k~GlalnP~Tp~--~~i~~~l~~~D~vlv 134 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQL--------------IKEHGCQAGVVLNPATPL--HHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHH--------------HHHcCCcEEEEeCCCCCH--HHHHHHHHhCCeEEE
Confidence 4456666789999999887621 11121111 233466666665554432 233333456777777
Q ss_pred -----eCCCCeeee--hh---hhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHHH
Q 017770 139 -----DLPDWQVIP--AE---NIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALKE 201 (366)
Q Consensus 139 -----~~~DW~iIP--lE---NliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~ev~~l~~ 201 (366)
.|.+.+.|| +| .+-+..++.+ ...+.+-.-.. .+.+-.+.+.|+|++++- .+|+ +.++++++
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 345777887 33 2222222211 12233333333 556668889999999764 3454 34444444
Q ss_pred hh
Q 017770 202 YF 203 (366)
Q Consensus 202 ~~ 203 (366)
.+
T Consensus 214 ~~ 215 (220)
T PRK08883 214 EL 215 (220)
T ss_pred HH
Confidence 33
No 230
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=39.77 E-value=40 Score=31.85 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=31.0
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 287 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 287 Pgg-kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|+| -|+||.+|+.||+|.+-...|+... +-..+|+++|=+=
T Consensus 118 ~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l------~~~~~~~vlIAgG 159 (283)
T cd06188 118 PPGIGSSYIFNLKPGDKVTASGPFGEFFI------KDTDREMVFIGGG 159 (283)
T ss_pred CCceehhHHhcCCCCCEEEEECccccccc------cCCCCcEEEEEec
Confidence 444 4789999999999999999997632 1246899988543
No 231
>PRK13856 two-component response regulator VirG; Provisional
Probab=39.32 E-value=2.2e+02 Score=25.31 Aligned_cols=67 Identities=25% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-...=.+ .++..+.. ....++.......+......+++.|+|+++.+|-++.++.+.
T Consensus 45 ~~dlvi~d~~l~~~~g~-~l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~ 112 (241)
T PRK13856 45 TVDVVVVDLNLGREDGL-EIVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLAR 112 (241)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHH
Confidence 45777774332221111 13333321 234455555433334445688999999999999999887543
No 232
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=39.27 E-value=39 Score=34.04 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=31.0
Q ss_pred ec-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 286 VP-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 286 ~P-ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.| |.-|.||.+|+.||+|.+-...|+.-.. . +.||+++|=+
T Consensus 237 ~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----~-~~~~lvlIAg 278 (405)
T TIGR01941 237 IPPGIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 278 (405)
T ss_pred CCCCcHHHHHhcCCCcCEEEEEeccCCCeec-----C-CCCCEEEEec
Confidence 35 4457999999999999999999986321 1 3589888743
No 233
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.22 E-value=60 Score=21.41 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=26.8
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017770 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 287 PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPL 327 (366)
|+|+.-|.+.- .++.|.++|.+.. .+++++++-..|-
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~---~~~~~i~vg~~P~ 37 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATN---KVIATIPVGGYPF 37 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCC---eEEEEEECCCCCc
Confidence 67888888774 4778888997432 4677888776664
No 234
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=39.08 E-value=27 Score=34.61 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=27.1
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
|+.|++++ +-..-+=|...++++| ..++|.|+|+|++.|
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdA---a~aMElG~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDA---AQAMELGADAVLLNT 212 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHH---HHHHhcccceeehhh
Confidence 45667765 2333344566788876 567899999999986
No 235
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=38.97 E-value=1.5e+02 Score=26.20 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
-+.+..|++.|++.+.++..+ .+..+...++..+. +..| ..+-+.+.- + ++.. .+.+-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~----------~~~~----~~l~i~~~~--~-la~~-~g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELC----------RRYG----VPFIVNDRV--D-LALA-LGADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHH----------HHhC----CeEEEECHH--H-HHHH-cCCCEE
Confidence 357788999999998887532 22222222222111 0011 112223321 2 2222 234555
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.+...+ ++.+.+-..+ +....|-..+.+.+|++ +++|.|+|=|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 553333 3444443322 23457888899998875 477899999986
No 236
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=38.92 E-value=72 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=23.2
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCCH
Q 017770 165 ISKTPSEAQIFL-EALEQGLGGIVLKVEDV 193 (366)
Q Consensus 165 ~v~~~~eA~~al-~~LE~G~DGVvl~~~d~ 193 (366)
.+.+.++++.++ .+++.|-+|+|++..|.
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds 159 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPDA 159 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 356888888777 78899999999997653
No 237
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=38.83 E-value=1.2e+02 Score=28.50 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=69.0
Q ss_pred EEEEe----CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eee-eeeecCCccccCCCCeeEEEEEecChhh
Q 017770 53 VWIWT----ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLD-PLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (366)
Q Consensus 53 vWiw~----~~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i~--~i~-~l~~~~g~~~~~~gk~v~~~~~v~~~ed 122 (366)
+++|- .+.+-+..+++.|++.+++... +.++++++.+-- .+. .+-+.++... -.|- .-...++.+
T Consensus 76 ~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~-~~Gw----~~~~~~~~~ 150 (241)
T PRK14024 76 VKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLA-ARGW----TRDGGDLWE 150 (241)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEec-cCCe----eecCccHHH
Confidence 44554 5899999999999999998763 455565554321 111 1112222211 1121 001112222
Q ss_pred hhhhccccCCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 123 LQQLQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+-..... ..++.+++... ||..| +.+.. .....+++. +.+++|++.++...+.|+|||++..-
T Consensus 151 ~~~~l~~-~G~~~iiv~~~~~~g~~~G~d~~~i--~~i~~---~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 151 VLERLDS-AGCSRYVVTDVTKDGTLTGPNLELL--REVCA---RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHh-cCCCEEEEEeecCCCCccCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 2121111 33567777554 35443 22222 224456654 78999999887766789999998653
No 238
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=38.79 E-value=1.5e+02 Score=26.92 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=26.7
Q ss_pred EEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 162 VFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 162 l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
+-..+++.++++.++. .|+|+|++.+.-......++++.
T Consensus 79 ~~GGI~~~ed~~~~~~---~Ga~~vilg~~~l~~~~~l~ei~ 117 (233)
T PRK00748 79 VGGGIRSLETVEALLD---AGVSRVIIGTAAVKNPELVKEAC 117 (233)
T ss_pred EcCCcCCHHHHHHHHH---cCCCEEEECchHHhCHHHHHHHH
Confidence 3447899999987766 69999999986443333334443
No 239
>PRK13794 hypothetical protein; Provisional
Probab=38.70 E-value=40 Score=35.40 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=35.6
Q ss_pred eeeecCCc-----eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccc
Q 017770 273 FRVNAGPV-----HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRP 326 (366)
Q Consensus 273 FRVNAGaV-----HaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RP 326 (366)
-.|+.|++ +-.-.++-|-+.-=.+++.||+|+|++.+|+ ..-||++++-..-
T Consensus 127 V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~~~g~--~iavG~a~~s~~e 183 (479)
T PRK13794 127 IVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILDENGD--VVGVGRARMSYEE 183 (479)
T ss_pred EEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEcCCCc--EEEEEEeecCHHH
Confidence 45666765 2223333445555567899999999999986 5889999864443
No 240
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=38.46 E-value=1.5e+02 Score=28.33 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=64.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC-
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG- 131 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i~--~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~- 131 (366)
++.+.+...++.|++.+++... +.++.+++.+.- ++ .+.+|- .. ++++..++.-....+.-++..+.....
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~i-vvslD~-k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~~ 160 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIV-AVGLDV-LE-DGEWHTLGNRGWSDGGGDLEVLERLLDS 160 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccE-EEEEEE-ec-CCceEEEECCCeecCCCcHHHHHHHHHh
Confidence 6899999999999999998753 345555543321 11 122221 00 111112221111112223333322221
Q ss_pred -CCCeEEEeCC---CC-eeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 132 -QAENIVIDLP---DW-QVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 132 -~~~~vvv~~~---DW-~iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
....+|+..- += +=+.+| ++.++. ..+..+++ .+++.+|-+.+...-+.|+||+++..
T Consensus 161 ~g~~~ii~tdI~~dGt~~G~d~~-l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 161 GGCSRVVVTDSKKDGLSGGPNEL-LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred CCCCEEEEEecCCcccCCCcCHH-HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 2344555321 11 122333 222222 23446665 58999999877555578999999754
No 241
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=38.34 E-value=36 Score=32.09 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=25.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
...+.|++|| .+++.|...++.|+|+|+.+
T Consensus 221 ~~g~~v~~WTVn~~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 221 KANISVNLYVVNEPWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HCCCEEEEEccCCHHHHHHHHHcCCCEEecC
Confidence 3567799999 56999999999999998853
No 242
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=38.31 E-value=15 Score=36.55 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=16.2
Q ss_pred eEEEeecCCCCCCceEEE
Q 017770 231 RVCVDLCSLMRPGEGLLV 248 (366)
Q Consensus 231 RVCVDtcSll~~GEGmLV 248 (366)
.||+|||-.+..|.|+..
T Consensus 171 gvCiDtcH~~Aagy~~~~ 188 (280)
T COG0648 171 GVCIDTCHAFAAGYDIIT 188 (280)
T ss_pred EEEEEchhhhhccCCcCc
Confidence 489999999999999864
No 243
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=38.17 E-value=1.6e+02 Score=26.57 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-+..=-+ .++..++. ....++..... .+.....++++.|++|.+.+|.+++++.+.
T Consensus 49 ~~DlvilD~~~p~~~G~-eli~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~ 116 (239)
T PRK10430 49 PIDLILLDIYMQQENGL-DLLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 (239)
T ss_pred CCCEEEEecCCCCCCcH-HHHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45777775432221112 23333332 23455555443 334456789999999999999998877553
No 244
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.99 E-value=1.3e+02 Score=25.76 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--------hhhhhhccceeeeeeeeecCCccccC--CCCeeEEEEEec---Chhhhhhh
Q 017770 60 KQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDS--GDRRVGSIIEVS---TPQELQQL 126 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~--------~~~~~~l~~i~~i~~l~~~~g~~~~~--~gk~v~~~~~v~---~~ed~e~~ 126 (366)
.+.+..|.+.|+|++++.... .+..+.+.++ .+. .+.++..|.... +++.+.++
T Consensus 68 ~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~~pv~iy~~p~~~~~~~~~~~~ 134 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAV-------------VEAADGGLPLKVILETRGLKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHH-------------HHHhcCCceEEEEEECCCCCCHHHHHHH
Q ss_pred ccccCCCCeEEEeCCCC------eeeehhhhhhccc-CCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 127 QPADGQAENIVIDLPDW------QVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 127 ~~~~~~~~~vvv~~~DW------~iIPlENliA~~q-~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
++.........+...-- ..--+..++..+. +.+-.+....++++.+.-++.. |++|+++
T Consensus 135 ~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~---Ga~g~~~ 200 (201)
T cd00945 135 ARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA---GADGIGT 200 (201)
T ss_pred HHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh---ccceeec
No 245
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=37.97 E-value=46 Score=30.98 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.9
Q ss_pred ceeeeeec-cCCCeEEEEcCCC-CeeEEeeeeEEEeccceEEEEE
Q 017770 290 KTCYLSEL-KSGKEVIVVDQKG-RQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 290 kT~YLSEL-~sG~eVLvVd~~G-~tR~a~VGRvKIE~RPLlLIeA 332 (366)
-|.||.++ +.||+|.+...-| .... -+ +.+|+++|=+
T Consensus 79 ~S~~L~~~~~~Gd~v~i~gp~gg~F~~-----~~-~~~~~vlIAg 117 (245)
T cd06200 79 GSGWLTRHAPIGASVALRLRENPGFHL-----PD-DGRPLILIGN 117 (245)
T ss_pred echhhhhCCCCCCEEEEEecCCCcccC-----CC-CCCCEEEEec
Confidence 78999874 8999999987544 3321 12 4689998844
No 246
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=37.96 E-value=3.2e+02 Score=26.76 Aligned_cols=111 Identities=16% Similarity=0.183 Sum_probs=66.8
Q ss_pred chhHHHHHHHhCCcEEEEcCc--c----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSE--N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~--~----~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
++..+-.|...|+|++++--. + .++.+.-.++ |- -.+++|.+.+|++.+... .
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-----------------Gl--e~LVEVh~~~El~~a~~~--g 171 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSL-----------------GM--DVLVEVHTEDEAKLALDC--G 171 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHc-----------------CC--ceEEEECCHHHHHHHHhC--C
Confidence 455666666799999876531 0 1111111222 32 268899999999886653 5
Q ss_pred CCeEEEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE-----ecCCHHH
Q 017770 133 AENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL-----KVEDVKA 195 (366)
Q Consensus 133 ~~~vvv~~~DW~--iIPl---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~~e 195 (366)
++.+-|+-+|-+ .+.+ ++|...+.. +.-+++ ..++++|++.+.. ++|||++ +.+||.+
T Consensus 172 a~iiGINnRdL~t~~vd~~~~~~L~~~ip~-~~~~IsESGI~t~~d~~~l~~----~~davLvG~~lm~~~d~~~ 241 (247)
T PRK13957 172 AEIIGINTRDLDTFQIHQNLVEEVAAFLPP-NIVKVGESGIESRSDLDKFRK----LVDAALIGTYFMEKKDIRK 241 (247)
T ss_pred CCEEEEeCCCCccceECHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHHH----hCCEEEECHHHhCCCCHHH
Confidence 677888887654 3333 445555432 222343 4678899888653 3999987 4455543
No 247
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=37.84 E-value=1.4e+02 Score=25.56 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...+.++++..-+..-.+ .++..++. ....++... +..+......+++.|+|+.+.+|-++.++.+.
T Consensus 43 ~~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 110 (223)
T PRK11517 43 DDYALIILDIMLPGMDGW-QILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLAR 110 (223)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 346777775432222111 22222221 134555544 34455667899999999999999998877554
No 248
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=37.74 E-value=1.3e+02 Score=32.32 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=86.3
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCC
Q 017770 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+.||+.+..++|-|+|.+-... .+.+.+++..++ +.+. |+.+..+-+|..++-++.+..-....|
T Consensus 175 eKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~SD 241 (477)
T COG0469 175 EKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEASD 241 (477)
T ss_pred ccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHhcC
Confidence 3589999999999999654332 123333433322 1112 333667889999998888777666678
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017770 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (366)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (366)
-+.|--.|--+ ||+|++.. .....+.-+|.. ..+-.|+--.+.+---|+|+|+|.-+.
T Consensus 242 GIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G 321 (477)
T COG0469 242 GIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 321 (477)
T ss_pred ceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcC
Confidence 88886556554 78887643 222222233332 233466666788888899999999875
Q ss_pred ---HHHHHHHHHhhcc
Q 017770 193 ---VKAVLALKEYFDG 205 (366)
Q Consensus 193 ---~~ev~~l~~~~~~ 205 (366)
.+.|+-+..++..
T Consensus 322 ~yPveaV~~M~~I~~~ 337 (477)
T COG0469 322 KYPVEAVATMARIAKE 337 (477)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3566666666643
No 249
>CHL00148 orf27 Ycf27; Reviewed
Probab=37.45 E-value=1.1e+02 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++..... .+......+++.|+++++.+|-++.++.+.
T Consensus 77 ~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 116 (240)
T CHL00148 77 DVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEAR 116 (240)
T ss_pred CCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 3455554433 344556788999999999999999877553
No 250
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=37.37 E-value=25 Score=33.74 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.7
Q ss_pred eeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 293 YLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 293 YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
+|++-..|| ||++|..|..+.+.+|-.
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd~ 90 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGDL 90 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHHH
Confidence 899999999 999999999999998853
No 251
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=37.26 E-value=2.2e+02 Score=22.89 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=67.3
Q ss_pred cEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccc
Q 017770 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPA 129 (366)
Q Consensus 51 K~vWiw~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~ 129 (366)
.++++=+.+.+-...|.+-|++.++...+ .+..+++.++. + |..+-..++..+ ++.++.....
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~-------------~--~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELT-------------G--GRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHT-------------T--TSSEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc-ccccccccccc-------------c--cccceEEEEecCcHHHHHHHHHH
Confidence 45666666666677778888887775543 22333333331 1 122345566676 7777776666
Q ss_pred cCC-CCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCC-HHHHHHHHHHhh
Q 017770 130 DGQ-AENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKT-PSEAQIFLEALE 180 (366)
Q Consensus 130 ~~~-~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~-~~eA~~al~~LE 180 (366)
.++ +..+++-.. ++..+|.-+++.. +.++...... .+|.+.+++-|.
T Consensus 79 l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp EEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 655 445555444 4778888888875 4456555444 488888877654
No 252
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=37.22 E-value=1.5e+02 Score=27.83 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=63.8
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhh----hhhccceeeeeeeeecCC-ccccCCCCeeEEEEEecChh
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQL----AIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQ 121 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~---~~~~----~~~l~~i~~i~~l~~~~g-~~~~~~gk~v~~~~~v~~~e 121 (366)
.+|+=- .+.+-+...++.|++.+++... +.+. ++..++=..+--+-..+| ..+...++... -.+++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~----~~~~~ 150 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESS----GIDLE 150 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEE----EEEHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccC----CcCHH
Confidence 355522 5899999999999999998763 2233 333333222322344555 43333333210 12333
Q ss_pred hhhhhccccCCCCeEEEeCCCC----eeeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 122 ELQQLQPADGQAENIVIDLPDW----QVIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW----~iIPlE---NliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.-......+ ...+|+..-|. +=+.+| .+.+.. +..+++ .+++.+|-+.+. +.|+||+++-.
T Consensus 151 ~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg~ 221 (229)
T PF00977_consen 151 EFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVGS 221 (229)
T ss_dssp HHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEESH
T ss_pred HHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEeh
Confidence 3332222323 44455533211 113333 333332 445655 478999988777 99999999753
No 253
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=37.07 E-value=1.6e+02 Score=26.40 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-+..=-+ .++..+.. ....++.... .++......+++.|++|.+.+|-+++++.+.
T Consensus 50 ~pdlvllD~~mp~~~gl-e~~~~l~~~~~~~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~ 117 (225)
T PRK10046 50 KPGLILLDNYLPDGRGI-NLLHELVQAHYPGDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHHH
Confidence 46777775443221111 23333322 2345555443 3445667889999999999999998877553
No 254
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=37.07 E-value=34 Score=32.35 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=64.8
Q ss_pred EEEEEEEEEcCCcc-eEEEeecCC---CCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEecCCce
Q 017770 217 KATVTRVDVAGMGD-RVCVDLCSL---MRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLVPGGKT 291 (366)
Q Consensus 217 ~atVt~V~~vGmGD-RVCVDtcSl---l~~GEGmLVGS~S~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~PggkT 291 (366)
..+|++++.+--.. +..++.=.. +.||+ ++.|.-.+-.+.|| +++-|.+-+-.-.|=.+..-|-.|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQ---------fv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQ---------FVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCc---------EEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence 47777777774332 344544443 67776 44444444455555 445554422225676676677789
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
+|+++|+.||.|-+...-|+.-... + -.+|+++|=+-
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~~----~-~~~~vlliagG 116 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLRE----K-IGKPVLLIAGG 116 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCcccc----c-cCCcEEEEecc
Confidence 9999999999999999999875442 1 24456666443
No 255
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.87 E-value=23 Score=36.42 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017770 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (366)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (366)
...-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3455677889999999999999998888887664
No 256
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=36.76 E-value=22 Score=36.64 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=39.7
Q ss_pred EeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccc
Q 017770 248 VGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRP 326 (366)
Q Consensus 248 VGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RP 326 (366)
+||.-+|+.|-.-+-.+. -.||||+|- |.+|---||---+-|+-+..-+-+| .|||+||
T Consensus 258 ~~NvTRFLmLar~p~ip~---t~rl~ktsi--vf~~~~gp~vLfkvl~vfa~r~inl---------------tkIesRP 316 (377)
T KOG2797|consen 258 LGNVTRFLMLAREPIIPD---TDRLFKTSI--VFFREKGPGVLFKVLSVFAFRSINL---------------TKIESRP 316 (377)
T ss_pred cCCeeEEEEEeccCCCCC---CCccceeeE--EEEeecCCchHHHHHHHHHhhhcee---------------eeeeccc
Confidence 688899999855443322 689999985 5556666665555555555444443 5999999
No 257
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=36.66 E-value=82 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred cEEEEEeC-chhHHHHHHHhCCcEEEEcCc
Q 017770 51 KRVWIWTE-SKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 51 K~vWiw~~-~K~~vT~ALEsG~~~~vv~~~ 79 (366)
..+.+-.. ..+.+..+.+.|+|++.+..+
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEeec
Confidence 33655443 345678888999999888764
No 258
>PRK06247 pyruvate kinase; Provisional
Probab=36.38 E-value=1.1e+02 Score=32.81 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=86.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+.-|++-|+|.+-... .+++.++++.++- ++.+..+.+|.+++.++.+-.-....|-+
T Consensus 174 kD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l----------------~~~~~iiaKIEt~eav~nldeI~~~~DgI 237 (476)
T PRK06247 174 KDRADLEFALELGVDWVALSFVQRPEDVEEVRKII----------------GGRVPVMAKIEKPQAIDRLEAIVEASDAI 237 (476)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh----------------hhcCeEEEEECCHHHHHhHHHHHHHcCEE
Confidence 578889999999999665442 2345555555551 22356788999999888877766668888
Q ss_pred EEeCCC-Ceeeehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~D-W~iIPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
.+--.| .-=+|+|++-. .....+.-+|.. ..+-.|+--.+.+..-|+|||+|..+.
T Consensus 238 mVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~y 317 (476)
T PRK06247 238 MVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKY 317 (476)
T ss_pred EEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCC
Confidence 885444 44577666543 222222223331 234477778888999999999999553
Q ss_pred -HHHHHHHHHhhcc
Q 017770 193 -VKAVLALKEYFDG 205 (366)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 318 PveaV~~m~~I~~~ 331 (476)
T PRK06247 318 PVEAVRTMARIIRQ 331 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777643
No 259
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=36.13 E-value=45 Score=33.61 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|.-|.||.+|+.||+|.+-...|+.-.. . ..+|+++|=+
T Consensus 244 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~-----~-~~~~ivlIAg 282 (409)
T PRK05464 244 GIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 282 (409)
T ss_pred CchhhHHHhCCCCCEEEEEccccCcEec-----C-CCceEEEEEe
Confidence 4458899999999999999999987321 1 4688888843
No 260
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=36.12 E-value=16 Score=35.48 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN 80 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~ 80 (366)
+..+++..|-+.|+..+++...+
T Consensus 18 d~~~vi~~a~~~gv~~~~~~g~~ 40 (256)
T COG0084 18 DRDEVIARAREAGVKKMVVVGTD 40 (256)
T ss_pred CHHHHHHHHHHcCCcEEEEeecC
Confidence 45778999999999998887654
No 261
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.07 E-value=1.4e+02 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.+.+++... +.++++.++...+-.++..+.+.++++. +.+.|+|++++.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 4778887543 4466777766666788888888888765 4568999999854
No 262
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=36.04 E-value=34 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=25.4
Q ss_pred ceeEEEecCCceeeeee--ccCCCeEEEEc---CCCCe
Q 017770 280 VHAYVLVPGGKTCYLSE--LKSGKEVIVVD---QKGRQ 312 (366)
Q Consensus 280 VHaYv~~PggkT~YLSE--L~sG~eVLvVd---~~G~t 312 (366)
.|+|.. .++.+-|++. +..|++||+|| +.|.|
T Consensus 96 ~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT 132 (191)
T TIGR01744 96 VHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQA 132 (191)
T ss_pred EEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChH
Confidence 477777 5667788886 78999999999 66765
No 263
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=35.92 E-value=74 Score=30.81 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=31.4
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
+.+++.++..+-.+++ .|++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 4677777666656554 47777776655 568999987 778876544
No 264
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.91 E-value=1.4e+02 Score=29.65 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=56.4
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-CCC
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQA 133 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~-~~~ 133 (366)
|..+.+++.+.-+.|.=+++...... ++.+.+.++.. ...++..+.. ++++.+.+.... ...
T Consensus 44 ~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~---------------~l~v~~~~~~-~~~~~~~~~~l~eagv 107 (325)
T cd00381 44 TVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKG---------------RLLVGAAVGT-REDDKERAEALVEAGV 107 (325)
T ss_pred cCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhcc---------------CceEEEecCC-ChhHHHHHHHHHhcCC
Confidence 33456766666677777777654222 22333322210 0111222222 344445544333 357
Q ss_pred CeEEEeCC-CCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017770 134 ENIVIDLP-DWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 134 ~~vvv~~~-DW~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
+.+++++. ... -.+.++|.++.... ..|++ .+.+.++|+ .+++.|+|+|++
T Consensus 108 ~~I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~---~l~~aGaD~I~v 162 (325)
T cd00381 108 DVIVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR---DLIDAGADGVKV 162 (325)
T ss_pred CEEEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHH---HHHhcCCCEEEE
Confidence 88888664 222 12344555544332 34553 556666655 456789999997
No 265
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=35.89 E-value=93 Score=30.77 Aligned_cols=136 Identities=14% Similarity=0.226 Sum_probs=77.3
Q ss_pred EEEEeC--chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChhh
Q 017770 53 VWIWTE--SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (366)
Q Consensus 53 vWiw~~--~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~ed 122 (366)
|.+.-+ +-+.+..|++.|++.++++.-+ .+..+++..++.-. ++-.+=|.+...++..++.- ..+++|+
T Consensus 80 V~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~pee 158 (293)
T PRK07315 80 VAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIED 158 (293)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHH
Confidence 666432 6679999999999999998532 34444444433311 12223333333222222211 1389999
Q ss_pred hhhhccccCCCCeEEEe-------CCC-CeeeehhhhhhcccC-C-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 123 LQQLQPADGQAENIVID-------LPD-WQVIPAENIVASFQG-S-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 123 ~e~~~~~~~~~~~vvv~-------~~D-W~iIPlENliA~~q~-~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..++. . ...|++-+. +.. .+.|-+|-| .+++. . +.-|++.=.|--.-+-+-.+.+.|+++|=+.++=
T Consensus 159 a~~f~-~-tgvD~LAv~iG~vHG~y~t~~k~l~~e~L-~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 159 AKAMV-E-TGIDFLAAGIGNIHGPYPENWEGLDLDHL-EKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HHHHH-H-cCCCEEeeccccccccCCCCCCcCCHHHH-HHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 88877 3 468998886 333 234666643 22222 1 2345555553222234566789999999998873
No 266
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=35.66 E-value=3.4e+02 Score=27.74 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=54.6
Q ss_pred EEEEEEEE-------EcCCcceEEEeec-C-CCCC---CceEEEeccCc-----eEE------EEeec-----cccCCCC
Q 017770 217 KATVTRVD-------VAGMGDRVCVDLC-S-LMRP---GEGLLVGSFAR-----GLF------LVHSE-----CLESNYI 268 (366)
Q Consensus 217 ~atVt~V~-------~vGmGDRVCVDtc-S-ll~~---GEGmLVGS~S~-----glF------LVhsE-----t~es~Yv 268 (366)
.++|.+|+ .+--||||++-+- . -+.+ --|+.++.... --| |-|.| -.+.|-.
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~ 350 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIK 350 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCC
Confidence 46777776 4568999998652 0 1111 12555543211 111 11211 1134566
Q ss_pred CCCCeeeecCCceeEEEe--cCCceeee-----eeccCCCeEEEEcCCC-CeeEEeeeeEE
Q 017770 269 ASRPFRVNAGPVHAYVLV--PGGKTCYL-----SELKSGKEVIVVDQKG-RQRTAVVGRVK 321 (366)
Q Consensus 269 a~RPFRVNAGaVHaYv~~--PggkT~YL-----SEL~sG~eVLvVd~~G-~tR~a~VGRvK 321 (366)
+.+++.++.|..|.-..+ .++...-| --++.||++++....| +.|.+-+|-+|
T Consensus 351 ~g~~~~l~~~t~~~~~~i~~i~~~~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 351 TGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred CCCEEEEEEeccEEEEEEEEcCCcEEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 667777787777654433 33221111 1246788888877544 46777666543
No 267
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=35.65 E-value=12 Score=36.93 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.0
Q ss_pred eEEEeecCCCCCCc
Q 017770 231 RVCVDLCSLMRPGE 244 (366)
Q Consensus 231 RVCVDtcSll~~GE 244 (366)
+||+|||..+.-|-
T Consensus 175 gVClDTCH~FaaGy 188 (281)
T KOG3997|consen 175 GVCLDTCHTFAAGY 188 (281)
T ss_pred eeeHhhhhhhcccc
Confidence 59999999998764
No 268
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.58 E-value=47 Score=28.41 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~ 77 (366)
+..+.+++|+ .+++.+..++..|+|+++.+
T Consensus 158 ~~g~~v~~wtvn~~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 158 AAGLKVYVWTVNDPEDARRLLALGVDGIITD 188 (189)
T ss_pred HcCCEEEEEcCCCHHHHHHHHHCCCCEEecC
Confidence 5677899999 57999999999999998853
No 269
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.44 E-value=84 Score=31.57 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|=.+|.|++|++ ++||.|+|=|+|+.=+|+++++..+.+
T Consensus 189 ~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 189 KKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred ceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 46899999999987 557889999999999999998887774
No 270
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=35.34 E-value=41 Score=33.64 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=27.1
Q ss_pred cCCceeeeeeccCCCeEEE-E-cCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 287 PGGKTCYLSELKSGKEVIV-V-DQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 287 PggkT~YLSEL~sG~eVLv-V-d~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.|--|.||++|+.||+|.+ + ...|.-+.- .-..+|+++|=+
T Consensus 196 ~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~-----~~~~~piImIa~ 238 (384)
T cd06206 196 RGVASSYLSSLRPGDSIHVSVRPSHSAFRPP-----SDPSTPLIMIAA 238 (384)
T ss_pred eeehHHHHhhCCCCCeEEEEEecCCCccCCC-----CCCCCCEEEEeC
Confidence 3557899999999999987 3 344543210 013589998854
No 271
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=35.26 E-value=96 Score=29.63 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE-----ecCCH-HHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-----KVEDV-KAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~--~~~eA~~al-~~LE~G~DGVvl-----~~~d~-~ev~~l 199 (366)
..+|++=.. |. -+++.+-...+ .-+...+...+ |.+++..++ .+++.|++|+.. ..+|| ..+++|
T Consensus 172 ~GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l 247 (267)
T PRK07226 172 LGADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAI 247 (267)
T ss_pred HCCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHH
Confidence 357887554 33 12343322222 23455666677 888887775 789999999964 44565 455666
Q ss_pred HHhhcc
Q 017770 200 KEYFDG 205 (366)
Q Consensus 200 ~~~~~~ 205 (366)
+.++.+
T Consensus 248 ~~~v~~ 253 (267)
T PRK07226 248 SAVVHE 253 (267)
T ss_pred HHHHhC
Confidence 666643
No 272
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=35.26 E-value=3.4e+02 Score=24.49 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=57.4
Q ss_pred EEEEEEEEEcCCcce-EEEeec------CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----ceeEEE
Q 017770 217 KATVTRVDVAGMGDR-VCVDLC------SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHAYVL 285 (366)
Q Consensus 217 ~atVt~V~~vGmGDR-VCVDtc------Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGa----VHaYv~ 285 (366)
.++|++++++.-+-+ +++..- ..+.+|+=+.|.-.. + .+ -.+|||-+-..+ ++=++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~--------~---g~-~~~r~ysi~s~~~~~~l~~~i~ 70 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPI--------D---GE-EVRRSYSICSSPGDDELRITVK 70 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeec--------C---CC-eeeeeeeecCCCCCCcEEEEEE
Confidence 467888888864433 344431 135566544432110 1 11 124777765443 444454
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEe
Q 017770 286 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334 (366)
Q Consensus 286 ~-Pgg-kT~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~ 334 (366)
. ++| -|.||. .++.||+|.+....|+-....-. ..+|+++|=+-.
T Consensus 71 ~~~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~----~~~~~llia~Gt 118 (241)
T cd06214 71 RVPGGRFSNWANDELKAGDTLEVMPPAGRFTLPPLP----GARHYVLFAAGS 118 (241)
T ss_pred EcCCCccchhHHhccCCCCEEEEeCCccccccCCCC----CCCcEEEEeccc
Confidence 3 444 589996 89999999998887755222110 257777765443
No 273
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=34.90 E-value=53 Score=31.77 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=27.5
Q ss_pred CC-CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SK-PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~-~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+ ..+|++|| .+++.|..-++-|+|+||.+..
T Consensus 227 ~~~gl~V~~WTVN~~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 227 RNSKVKIVLFGINTADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred hcCCcEEEEEEeCCHHHHHHHHHcCCCEEEeCCc
Confidence 44 77899999 6899999999999999998654
No 274
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=34.90 E-value=76 Score=31.38 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=33.8
Q ss_pred ceEEEEcCCHHH-HHHHHHHhhc---ccCeEEEecC------CHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~e-A~~al~~LE~---G~DGVvl~~~------d~~ev~~l~~~~~ 204 (366)
.++..++.+.++ ++-++++++. |+|+|+|+.- .+++++++++.++
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~ 239 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALD 239 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 479999999983 5555555555 5999999984 4677788888774
No 275
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=34.67 E-value=30 Score=37.95 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=32.1
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceE
Q 017770 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLl 328 (366)
+-|..||= ...=.++++||+|+||+.+| +..-|||+++-.+-|.
T Consensus 580 ~~v~apgV-v~~d~~ir~gDeV~Vv~e~~--~~lavG~A~~~~~em~ 623 (639)
T PRK13534 580 KSVFAKFV-IDCDEEIRPYDEVLVVNEDD--ELLAYGKALLNGRELM 623 (639)
T ss_pred CcccCCcc-eecCCCCCCCCEEEEEecCC--cEEEEEEEecCHHHHh
Confidence 34454432 23336899999999999887 5699999998776664
No 276
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.63 E-value=3.9e+02 Score=24.96 Aligned_cols=139 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceee--eee--eeecCC-------------------------
Q 017770 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL--LDP--LFIKEG------------------------- 101 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~vv~~~~-----~~~~~~l~~i~~--i~~--l~~~~g------------------------- 101 (366)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+... +.+ ++.+..
T Consensus 11 ~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~ 90 (210)
T PRK01222 11 TTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPE 90 (210)
T ss_pred CcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHH
Q ss_pred ---ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC-----------CCeeeehhhhhhcccCCCceEEEEcC
Q 017770 102 ---EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFAISK 167 (366)
Q Consensus 102 ---~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~-----------DW~iIPlENliA~~q~~~~~l~a~v~ 167 (366)
.+...-+.++--.+.+.+.++++.+......+|+++++.. ||++++ +.+ ...=++|.==
T Consensus 91 ~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~--~~p~~LAGGi 163 (210)
T PRK01222 91 FCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL--AKPWILAGGL 163 (210)
T ss_pred HHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc--CCCEEEECCC
Q ss_pred CHHHHHHHHHHhhcccCeEEEecC--------CHHHHHHHHHhhcc
Q 017770 168 TPSEAQIFLEALEQGLGGIVLKVE--------DVKAVLALKEYFDG 205 (366)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~--------d~~ev~~l~~~~~~ 205 (366)
+++-.+.++. ..+.+||=+.+. |++.++++.+.+..
T Consensus 164 ~peNv~~ai~--~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~ 207 (210)
T PRK01222 164 NPDNVAEAIR--QVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKS 207 (210)
T ss_pred CHHHHHHHHH--hcCCCEEEecCceECCCCCcCHHHHHHHHHHHHh
No 277
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.54 E-value=1.1e+02 Score=30.19 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..|-.+++|.+||+.+ ++.|+|-|.|++=.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A---~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREA---VAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4688999999998876 4799999999888888888877654
No 278
>PRK13795 hypothetical protein; Provisional
Probab=34.44 E-value=44 Score=36.31 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=39.0
Q ss_pred eeeecCCcee----EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017770 273 FRVNAGPVHA----YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 273 FRVNAGaVHa----Yv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPL 327 (366)
--|+.|++++ .-.++-|=+..=.+++.||+|+|++.+|+. .-||++++-..-|
T Consensus 129 VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~e~g~~--vavG~a~~s~~e~ 185 (636)
T PRK13795 129 VIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVTEDGEV--VGVGRAKMDGDDM 185 (636)
T ss_pred EEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEeCCCCE--EEEEEeccCHHHH
Confidence 4578888753 333445566666789999999999998874 8899998855554
No 279
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.26 E-value=1.1e+02 Score=27.58 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=46.9
Q ss_pred EEEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCeEE
Q 017770 113 SIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~DGVv 187 (366)
.++...++++....+... +..+.+-+..++..-+| .+..+...-..+.. .+-+.++++ .+++.|+|+|+
T Consensus 8 ~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~---~a~~~Ga~~i~ 81 (190)
T cd00452 8 AVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQAD---AAIAAGAQFIV 81 (190)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHH---HHHHcCCCEEE
Confidence 344556677665554433 45788888766655333 44444333223433 344555554 55679999999
Q ss_pred EecCCHHHHHH
Q 017770 188 LKVEDVKAVLA 198 (366)
Q Consensus 188 l~~~d~~ev~~ 198 (366)
+...|++-+..
T Consensus 82 ~p~~~~~~~~~ 92 (190)
T cd00452 82 SPGLDPEVVKA 92 (190)
T ss_pred cCCCCHHHHHH
Confidence 88777654433
No 280
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=34.19 E-value=1e+02 Score=28.25 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred cChhhhhhhcccc--CCCCeEEEeCC-CCeeeehhhhhhcccCCCceEEEEc----CCHHHH-HHHHHHhhcccCeEEE-
Q 017770 118 STPQELQQLQPAD--GQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAIS----KTPSEA-QIFLEALEQGLGGIVL- 188 (366)
Q Consensus 118 ~~~ed~e~~~~~~--~~~~~vvv~~~-DW~iIPlENliA~~q~~~~~l~a~v----~~~~eA-~~al~~LE~G~DGVvl- 188 (366)
.+++++++++... ..+|++-+.+. |.+. ++.+++.. +..+++.- .|.+++ +.+-++++.|++||.+
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~--~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES--FKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH--HHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3456666532222 35788887532 1111 34444432 33355532 344443 3456788999999986
Q ss_pred ----ecCCHHH
Q 017770 189 ----KVEDVKA 195 (366)
Q Consensus 189 ----~~~d~~e 195 (366)
..+||.+
T Consensus 215 ~~i~~~~dp~~ 225 (235)
T cd00958 215 RNIFQRPDPVA 225 (235)
T ss_pred hhhhcCCCHHH
Confidence 4456543
No 281
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=34.13 E-value=50 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCcEEEEEe-Cc-hhHHHHHHHhCCcEEEE
Q 017770 49 KPKRVWIWT-ES-KQVMTAAVERGWNTFVF 76 (366)
Q Consensus 49 ~~K~vWiw~-~~-K~~vT~ALEsG~~~~vv 76 (366)
....+++|| .+ .+.+...++.|+|+++.
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 456799999 45 89999999999999885
No 282
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=34.03 E-value=40 Score=32.84 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=29.5
Q ss_pred ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 286 VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 286 ~Pggk-T~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|+|+ ++|| ..|+.||+|.+-...|+-..-. -.-..+|++||=+-
T Consensus 72 ~~~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~---~~~~~~~~lliagG 118 (352)
T TIGR02160 72 IPGGLFSTWANDEIRPGDTLEVMAPQGLFTPDL---STPHAGHYVAVAAG 118 (352)
T ss_pred eCCCcchHHHHhcCCCCCEEEEeCCceeeecCC---CccccccEEEEecc
Confidence 36565 7999 5899999999988887642110 00123788887543
No 283
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.88 E-value=4.1e+02 Score=25.07 Aligned_cols=83 Identities=11% Similarity=-0.005 Sum_probs=45.6
Q ss_pred cChhhhhhhccccCCCCeEEEeCC------CCeeeehhhhhhcccCCCceEEEEcC-CHHHHHHHHHHhhcccCeEEE--
Q 017770 118 STPQELQQLQPADGQAENIVIDLP------DWQVIPAENIVASFQGSGKTVFAISK-TPSEAQIFLEALEQGLGGIVL-- 188 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~------DW~iIPlENliA~~q~~~~~l~a~v~-~~~eA~~al~~LE~G~DGVvl-- 188 (366)
.+.++..++. ...+||+.+-.- +.....+|.+=...+..+.-++|.-. +.+++. .+++.|+|||-+
T Consensus 119 ~s~~~a~~A~--~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~---~~~~~GA~giAvis 193 (221)
T PRK06512 119 RDRHGAMEIG--ELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSDLASAV---EVAETGAEFVALER 193 (221)
T ss_pred CCHHHHHHhh--hcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCCCHHHHH---HHHHhCCCEEEEhH
Confidence 3555544432 246899988321 12223344441112233556787753 666554 456889999965
Q ss_pred ---ecCCH-HHHHHHHHhhcc
Q 017770 189 ---KVEDV-KAVLALKEYFDG 205 (366)
Q Consensus 189 ---~~~d~-~ev~~l~~~~~~ 205 (366)
..+|| ..++++++.++.
T Consensus 194 ai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 194 AVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred HhhCCCCHHHHHHHHHHHHhh
Confidence 45676 556667766643
No 284
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.82 E-value=26 Score=36.14 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=25.7
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 017770 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (366)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (366)
-+.+-.+||.|+|||++.++|.+.+++|.++
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~ 45 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGRI 45 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccceE
Confidence 4567789999999999999988888777553
No 285
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=33.73 E-value=32 Score=31.06 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcccCeEEEec
Q 017770 170 SEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 170 ~eA~~al~~LE~G~DGVvl~~ 190 (366)
-++.-+|.+|.+|+|||++.-
T Consensus 41 vn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEec
Confidence 478899999999999999864
No 286
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=33.55 E-value=1.4e+02 Score=25.41 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-...-. -+++..++. ....++.... ..+......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvl~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 114 (228)
T PRK11083 47 PPDLVILDVGLPDISG-FELCRQLLAFHPALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAAR 114 (228)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHH
Confidence 3566666433222211 233333332 2345555443 3334556778999999999999998877553
No 287
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=33.47 E-value=1.7e+02 Score=24.72 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=39.8
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...+.++++..-... .--.++..+.. ....++... +..+......+++.|+++++.+|-+..++.+.
T Consensus 41 ~~~dlvl~d~~~~~~-~g~~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 109 (218)
T TIGR01387 41 DDYDLIILDVMLPGM-DGWQILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLAR 109 (218)
T ss_pred CCCCEEEEeCCCCCC-CHHHHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 345677774332221 11133333332 234455544 44556667888999999999999998876543
No 288
>PRK06201 hypothetical protein; Validated
Probab=33.40 E-value=27 Score=32.98 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=30.5
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 277 AGaVHaYv~~PggkT---~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
+|+.-.--..|++.. .++...++|| |+++|..|..+.+..|-.
T Consensus 54 ~G~A~Tv~~~~~d~~~~~~ai~~~~pG~-VlVid~~g~~~~a~~G~~ 99 (221)
T PRK06201 54 AGTALTVRTRPGDNLMIHRALDLARPGD-VIVVDGGGDLTNALVGEI 99 (221)
T ss_pred EEEEEEEEeeCCCcHHHHHHHhccCCCc-EEEEECCCCCCccchhHH
Confidence 455444334454433 4588889999 999999999999988854
No 289
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=32.94 E-value=2.9e+02 Score=23.08 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
+.+.++++..-...- --.++..+. ....++..... ++......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvi~d~~~~~~~-g~~~~~~l~-~~~~vi~~s~~-~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~ 111 (196)
T PRK10360 47 GVQVCICDISMPDIS-GLELLSQLP-KGMATIMLSVH-DSPALVEQALNAGARGFLSKRCSPDELIAA 111 (196)
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHc-cCCCEEEEECC-CCHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 457777754322211 112334433 23455555443 445567788899999999999998876543
No 290
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=32.44 E-value=40 Score=30.43 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCceeEEEe-cCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEE-eccceEEEEE
Q 017770 278 GPVHAYVLV-PGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~-Pggk-T~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKI-E~RPLlLIeA 332 (366)
|-..=+|.. |+|+ |+||. .|+.||+|.+....|+... .- ..+|+++|=+
T Consensus 58 ~~l~~~v~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l------~~~~~~~~lliag 110 (231)
T cd06191 58 DEISITVKRVPGGRVSNYLREHIQPGMTVEVMGPQGHFVY------QPQPPGRYLLVAA 110 (231)
T ss_pred CeEEEEEEECCCCccchHHHhcCCCCCEEEEeCCccceEe------CCCCCCcEEEEec
Confidence 444444543 6565 99997 6999999999998886421 11 2367777643
No 291
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=32.43 E-value=65 Score=35.16 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=40.3
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~PggkT~YLSEL~sG~eV-LvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.|||-+.- |-+-=.+..-|.-|+||.+|+.||.| -+...-|+.-.. . +.+|+++|=
T Consensus 44 ~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~--~----~~~~~llva 105 (752)
T PRK12778 44 RIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYITDVVGPLGNPSEI--E----NYGTVVCAG 105 (752)
T ss_pred eeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCEeCeEeCCCCCCccC--C----CCCeEEEEE
Confidence 57888752 33444555568899999999999999 699999987432 1 236777764
No 292
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.40 E-value=56 Score=30.09 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.2
Q ss_pred CCCcEEEEEeC-chhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWTE-SKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~~-~K~~vT~ALEsG~~~~vv~~ 78 (366)
++.+.+++|+- +.+.+..+++.|+|+|+.+.
T Consensus 229 ~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~ 260 (263)
T cd08567 229 ALGLKVVPWTVNDPEDMARLIDLGVDGIITDY 260 (263)
T ss_pred HCCCEEEEecCCCHHHHHHHHHcCCCEEEcCC
Confidence 45678999994 57888899999999998764
No 293
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=32.15 E-value=74 Score=31.74 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+|+.+- +.++++++..+-++.+- |++.++++.++ +.|+|||+ ||.|+.+.++.+
T Consensus 229 ~~~~l~-~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 229 AYKKLF-SNDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred chhhCC-HHHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 455554 56778777776666664 78888877554 67999976 788886655443
No 294
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=32.08 E-value=48 Score=25.91 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=12.7
Q ss_pred ccCCCeEEEEcCCCCeeEEe
Q 017770 297 LKSGKEVIVVDQKGRQRTAV 316 (366)
Q Consensus 297 L~sG~eVLvVd~~G~tR~a~ 316 (366)
+++||+|...|++|+--+.+
T Consensus 6 f~~GdrVQlTD~Kgr~~Ti~ 25 (54)
T PF14801_consen 6 FRAGDRVQLTDPKGRKHTIT 25 (54)
T ss_dssp --TT-EEEEEETT--EEEEE
T ss_pred CCCCCEEEEccCCCCeeeEE
Confidence 68999999999999876653
No 295
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.95 E-value=1.1e+02 Score=27.96 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=45.8
Q ss_pred EEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCCce--E-EEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 114 IIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKT--V-FAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 114 ~~~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~~~--l-~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
++...++++....+... +....+-+..+++.- +.+++.+...... + ...+-+.++++.+ ++.|+|||++
T Consensus 17 v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~~ 90 (187)
T PRK07455 17 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCFT 90 (187)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEEC
Confidence 34556666655544433 446777776666643 3444433222222 2 2355556888877 5679999999
Q ss_pred ecCCHHHH
Q 017770 189 KVEDVKAV 196 (366)
Q Consensus 189 ~~~d~~ev 196 (366)
.-.|++.+
T Consensus 91 p~~~~~~~ 98 (187)
T PRK07455 91 PHVDPELI 98 (187)
T ss_pred CCCCHHHH
Confidence 88887654
No 296
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=31.88 E-value=56 Score=30.32 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCCeeeecC-----CceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 270 SRPFRVNAG-----PVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 270 ~RPFRVNAG-----aVHaYv~~PggkT~YLSEL~sG~eV-LvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
.|||-+-.. -..=+|..-|.-|.||..|+.||+| .+....|+.-. +- ..+|+++|=+=
T Consensus 43 ~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~v~~i~gP~G~~~~----~~--~~~~~lliagG 106 (248)
T cd06219 43 RIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKIHDVVGPLGKPSE----IE--NYGTVVFVGGG 106 (248)
T ss_pred ccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCEeeeeecCCCCCee----cC--CCCeEEEEeCc
Confidence 467765332 2334455568899999999999999 59999997522 11 25788888654
No 297
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=31.85 E-value=64 Score=32.59 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=32.8
Q ss_pred eehhhhhhcccCCCceEEE-EcCCH------HHHHHHHHHh--hcccCeEEEecCCHHHHHH
Q 017770 146 IPAENIVASFQGSGKTVFA-ISKTP------SEAQIFLEAL--EQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 146 IPlENliA~~q~~~~~l~a-~v~~~------~eA~~al~~L--E~G~DGVvl~~~d~~ev~~ 198 (366)
++..+++++++..+-.|++ .+++. .++..+...+ +.|+|||+ ||.|+.+.+
T Consensus 290 ~~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~~~~GVDGIi--TD~P~~~~~ 349 (355)
T PRK11143 290 IKLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILYNQAGVDGVF--TDFPDKAVK 349 (355)
T ss_pred cChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHHHccCCCEEE--cCChHHHHH
Confidence 3455899998887777655 34431 1233333333 88999999 888886653
No 298
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.77 E-value=4.2e+02 Score=25.19 Aligned_cols=125 Identities=9% Similarity=-0.097 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-------hhhhhhccceeeeeeeee-cCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~-------~~~~~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
.+.+-+..+++.|++.+++.... .+.++++++=..+--|-. .++.+......... .++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~-----~~~~e~~~~l~~ 157 (232)
T PRK13586 83 RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKS-----MEVIDGIKKVNE 157 (232)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCC-----CCHHHHHHHHHh
Q ss_pred cCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 130 DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 130 ~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.+-.+.++.+-. +=.-=|=.+++..+......+++ +.-....+-.....+.|+||+++
T Consensus 158 ~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~via-sGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 158 LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEY-AGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHHHCCCCEEEE
No 299
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.66 E-value=59 Score=26.18 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=29.8
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEecc---ceEEEEEEeeccCCCceeeEEEeeccc
Q 017770 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIESR---PLILVEAKALALAGHSEPSLFLWFLVC 352 (366)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~a~VGRvKIE~R---PLlLIeAe~~~~~~g~~~sviLQnA~~ 352 (366)
-|+.||.|.+.+..|+. ..+||+... =.+.+..-......|..++.+..+...
T Consensus 48 gi~~Gd~V~v~~~~G~~----~~~v~~~~~i~~g~v~~~~~~~~~~~~~~~N~l~~~~~~ 103 (120)
T cd00508 48 GIKDGDLVRVSSRRGSV----VVRARVTDRVRPGTVFMPFHWGGEVSGGAANALTNDALD 103 (120)
T ss_pred CCCCCCEEEEEeCCEEE----EEEEEECCCcCCCEEEEecccCCccCCCcccCCcCCCcC
Confidence 47899999999999853 356776432 244444332000013446666655543
No 300
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=31.64 E-value=1.1e+02 Score=28.40 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=44.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehh---hhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlE---NliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
...+.++.-..... ...+-+|++..|-.. |-. +++.++. ....+++......+++...-..++.|++|.+.++
T Consensus 22 ~~~~~~~~l~~~~~-~~pd~vl~dl~d~~m-p~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 22 TFSSQSSFQDAMSR-ISFSAVIFSLSAMRS-ERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred EeCCHHHHHHHhcc-CCCCEEEeeccccCC-CCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 34556554433321 234666653333221 211 1344332 2355777665544444444444589999999999
Q ss_pred CCHHHHHHH
Q 017770 191 EDVKAVLAL 199 (366)
Q Consensus 191 ~d~~ev~~l 199 (366)
.+++++.+.
T Consensus 100 ~~~~eL~~a 108 (207)
T PRK11475 100 STLEILQQE 108 (207)
T ss_pred CCHHHHHHH
Confidence 999877653
No 301
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=31.45 E-value=69 Score=32.54 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=27.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.....|++|| .+++.+...++.|+|+|+.+..
T Consensus 221 ~~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~P 253 (351)
T cd08608 221 ASNLSVNLYTVNEPWLYSLLWCSGVPSVTSDAS 253 (351)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEECCH
Confidence 3567799999 5689999999999999998653
No 302
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.15 E-value=1.6e+02 Score=30.23 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=64.6
Q ss_pred EEEEe---CchhHHHHHHHhCCcEEEEcCc-----chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 017770 53 VWIWT---ESKQVMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (366)
Q Consensus 53 vWiw~---~~K~~vT~ALEsG~~~~vv~~~-----~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (366)
++++. ...+.+..++|.|+|.+.+... |......|..+..+ ++.-+.++.. ..|.++++..
T Consensus 134 v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----------ik~~~ipVIa-G~V~t~e~A~ 202 (368)
T PRK08649 134 VAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----------IYELDVPVIV-GGCVTYTTAL 202 (368)
T ss_pred EEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----------HHHCCCCEEE-eCCCCHHHHH
Confidence 45543 3578999999999999988431 11111112222111 1111333322 4678888866
Q ss_pred hhccccCCCCeEEEeCCCCe-----------eeehhhhhhcc-----------cCCCceEEEE--cCCHHHHHHHHHHhh
Q 017770 125 QLQPADGQAENIVIDLPDWQ-----------VIPAENIVASF-----------QGSGKTVFAI--SKTPSEAQIFLEALE 180 (366)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~-----------iIPlENliA~~-----------q~~~~~l~a~--v~~~~eA~~al~~LE 180 (366)
.+.. ..+|.|++ ..... -+|.--.|++. .+.+..|||. .++..| +..+|.
T Consensus 203 ~l~~--aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~d---iakAla 276 (368)
T PRK08649 203 HLMR--TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGD---IAKAIA 276 (368)
T ss_pred HHHH--cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHH---HHHHHH
Confidence 6654 46777766 32221 14532222221 1113456664 445544 455666
Q ss_pred cccCeEEEecC
Q 017770 181 QGLGGIVLKVE 191 (366)
Q Consensus 181 ~G~DGVvl~~~ 191 (366)
.|+|+|++-+-
T Consensus 277 lGAd~Vm~Gs~ 287 (368)
T PRK08649 277 CGADAVMLGSP 287 (368)
T ss_pred cCCCeecccch
Confidence 89999998765
No 303
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.07 E-value=4e+02 Score=25.20 Aligned_cols=135 Identities=11% Similarity=0.151 Sum_probs=67.2
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--hhhhhhccceee--------------eeeeee-cCC------c---cccC-CC
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIAL--------------LDPLFI-KEG------E---VYDS-GD 108 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~--------------i~~l~~-~~g------~---~~~~-~g 108 (366)
|+.+.+.+..+-+.||.++++..=. ....+.--++.+ ++-..+ +.| + ..+. .+
T Consensus 19 ~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~ 98 (289)
T cd02810 19 LLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPG 98 (289)
T ss_pred CCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 4566788888889999988876421 111111122222 221111 111 0 1122 35
Q ss_pred CeeEEEEEecChhhhhhhccccCC--CCeEEEeCCCCeee----------ehhhhhhcccCC-CceEEEEcC---CHHHH
Q 017770 109 RRVGSIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPSEA 172 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~--~~~vvv~~~DW~iI----------PlENliA~~q~~-~~~l~a~v~---~~~eA 172 (366)
+++.+-+--.++++..+.+..... .+.+-+++.-+..- .+..++.++... +.-|+.... +.+|.
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~ 178 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDI 178 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHH
Confidence 555444444467777776655433 67888876544321 133455554432 222444333 33344
Q ss_pred HHHHH-HhhcccCeEEEec
Q 017770 173 QIFLE-ALEQGLGGIVLKV 190 (366)
Q Consensus 173 ~~al~-~LE~G~DGVvl~~ 190 (366)
...+. +.+.|+|+|.+..
T Consensus 179 ~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 179 VELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHcCCCEEEEEc
Confidence 44444 4567899988864
No 304
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.90 E-value=1.1e+02 Score=28.19 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=51.4
Q ss_pred hhhhhhcccCCC--ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccc
Q 017770 148 AENIVASFQGSG--KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSN 211 (366)
Q Consensus 148 lENliA~~q~~~--~~l~a~v~~-~~eA~~al~~LE~G~DGVvl~~~d~~-------------ev~~l~~~~~~~~~~~~ 211 (366)
.++++..+.... .++.+-+.+ .++++.+ .+.|+|.|-+.-.-.+ .+..+.+.++..+...-
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a---~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNREKGIERA---LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCchhhHHHH---HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344555544433 567677777 5555554 5678998876654221 23333344433333444
Q ss_pred eeeeeEEEEEE--------------EEEcCCcceEEE-eecCCCCCCc
Q 017770 212 LLSLMKATVTR--------------VDVAGMGDRVCV-DLCSLMRPGE 244 (366)
Q Consensus 212 ~l~L~~atVt~--------------V~~vGmGDRVCV-DtcSll~~GE 244 (366)
.+.+....+++ +...| -|++|+ ||...+.|.+
T Consensus 130 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~ 176 (265)
T cd03174 130 EVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLATPEE 176 (265)
T ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcCHHH
Confidence 55555555665 33456 456665 8877777654
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=30.75 E-value=1.1e+02 Score=32.28 Aligned_cols=66 Identities=12% Similarity=0.317 Sum_probs=37.6
Q ss_pred Chhhhhhhcccc-CCCCeEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017770 119 TPQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 119 ~~ed~e~~~~~~-~~~~~vvv~~~-DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
++++++++.... ...+.++++.. +.+.-.+| .|.++... +..|++ .+.|.++|+ .+.+.|+|+|.+
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~v 309 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRI 309 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEE
Confidence 456666655544 45888888763 22222222 34444332 235555 466666666 455789999976
No 306
>PRK08999 hypothetical protein; Provisional
Probab=30.72 E-value=4.2e+02 Score=25.35 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=62.1
Q ss_pred hHHHHHHHhCCcEEEEcCcc---h---hhhhhccceeee--eeeeecCC-----------------ccc----c--CCCC
Q 017770 61 QVMTAAVERGWNTFVFLSEN---Q---QLAIDWSTIALL--DPLFIKEG-----------------EVY----D--SGDR 109 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~---~---~~~~~l~~i~~i--~~l~~~~g-----------------~~~----~--~~gk 109 (366)
+.+..++++|++.+..+..+ . ++++++..+..- .+++++|. +.- . +.++
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~~~~~~ 227 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARPLPAGR 227 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhccCCCCC
Confidence 56778999999999987643 2 233333333210 12333322 100 0 1122
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCC-------CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 017770 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLP-------DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (366)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~-------DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G 182 (366)
.++. .+.+.++.+++.. ..+||+.+..- +.+-.-++-+-...+..+..++|.-.= ..+.+-++++.|
T Consensus 228 ~ig~--S~h~~~~~~~a~~--~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI--~~~~~~~~~~~g 301 (312)
T PRK08999 228 WVAA--SCHDAEELARAQR--LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL--GPGDLEEAREHG 301 (312)
T ss_pred EEEE--ecCCHHHHHHHHh--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC--CHHHHHHHHHhC
Confidence 3332 3456666544433 35899988321 122222332222223345668877532 334445678889
Q ss_pred cCeEEEe
Q 017770 183 LGGIVLK 189 (366)
Q Consensus 183 ~DGVvl~ 189 (366)
+|||.+-
T Consensus 302 ~~gva~i 308 (312)
T PRK08999 302 AQGIAGI 308 (312)
T ss_pred CCEEEEE
Confidence 9999764
No 307
>PF04203 Sortase: Sortase family; InterPro: IPR005754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C60 (clan C-) and include the members of both subfamilies of sortases. The Staphylococcus aureus sortase is a transpeptidase that attaches surface proteins to the cell wall; it cleaves between the Gly and Thr of the LPXTG motif and catalyses the formation of an amide bond between the carboxyl-group of threonine and the amino-group of the cell-wall peptidoglycan []. Sortase homologues are found in almost all Gram-positives, a single Gram-negative (Shewanella putrefaciens) and an archaean (Methanobacterium thermoautotrophicum), where cell wall LPXTG-mediated decoration has not been reported [, ]. Surface proteins not only promote interaction between the invading pathogen and animal tissues, but also provide ingenious strategies for bacterial escape from the host's immune response. In the case of S. aureus protein A, immunoglobulins are captured on the microbial surface and camouflage bacteria during the invasion of host tissues. S. aureus mutants lacking the srtA gene fail to anchor and display some surface proteins and are impaired in the ability to cause animal infections. Sortase acts on surface proteins that are initiated into the secretion (Sec) pathway and have their signal peptide removed by signal peptidase. The S. aureus genome encodes two sets of sortase and secretion genes. It is conceivable that S. aureus has evolved more than one pathway for the transport of 20 surface proteins to the cell wall envelope. ; PDB: 2W1K_A 2OQZ_A 1RZ2_A 2OQW_A 1T2W_A 1IJA_A 1T2P_A 1T2O_C 2KID_A 3RCC_N ....
Probab=30.46 E-value=65 Score=26.68 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.7
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017770 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (366)
Q Consensus 287 PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvK 321 (366)
.+..-..|.+++.||+|.+.+.+|+..+-.|=+++
T Consensus 51 ~~~~F~~L~~~~~gd~i~~~~~~g~~~~Y~V~~~~ 85 (128)
T PF04203_consen 51 GGAMFSNLNKLKKGDEIYLTTPDGKTYEYRVTSVK 85 (128)
T ss_dssp TSSTTCGGGGGHTT-EEEEEETSSEEEEEEEEEEE
T ss_pred CCcccccccccCCCCEEEEEEecCEEEEEEEEEEE
Confidence 34555678999999999999999998666565655
No 308
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=30.32 E-value=2.6e+02 Score=29.49 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=32.4
Q ss_pred CCCCCCCCeeeecCCceeEEEe---cCCceeeee-----eccCCCeEEEEcC-CCCeeEEeeeeEE
Q 017770 265 SNYIASRPFRVNAGPVHAYVLV---PGGKTCYLS-----ELKSGKEVIVVDQ-KGRQRTAVVGRVK 321 (366)
Q Consensus 265 s~Yva~RPFRVNAGaVHaYv~~---PggkT~YLS-----EL~sG~eVLvVd~-~G~tR~a~VGRvK 321 (366)
.|.-.-.+.+++.|..|....+ .++....|. -++.||++++-+. .++.|++--|+++
T Consensus 385 ~~l~~g~~~~l~~gt~~~~~~i~~i~~~~~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~ 450 (460)
T PTZ00327 385 AKLKKGESLMINIGSTTTGGRVVGIKDDGIAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIR 450 (460)
T ss_pred cccCCCCEEEEEecccEEEEEEEEeCCCeEEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEc
Confidence 3455555566777777755444 222122222 2457888888777 3446777777665
No 309
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=30.04 E-value=3e+02 Score=23.63 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..+.++++..-... .--.++..+.. ....++..... .+......+++.|+|+.+.+|-++.++.+..
T Consensus 45 ~~dlvild~~l~~~-~g~~~~~~lr~~~~~pvi~lt~~-~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i 112 (225)
T PRK10529 45 KPDLIILDLGLPDG-DGIEFIRDLRQWSAIPVIVLSAR-SEESDKIAALDAGADDYLSKPFGIGELQARL 112 (225)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 46777775432221 11122222221 23345544433 3445567899999999999999988775543
No 310
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.79 E-value=31 Score=31.50 Aligned_cols=67 Identities=25% Similarity=0.303 Sum_probs=39.9
Q ss_pred EEEeccCceEEEEeeccc--cCCCCCCCCee-eecCCceeEEEecC-Cceeeeee--ccCCCeEEEEc---CCCCe
Q 017770 246 LLVGSFARGLFLVHSECL--ESNYIASRPFR-VNAGPVHAYVLVPG-GKTCYLSE--LKSGKEVIVVD---QKGRQ 312 (366)
Q Consensus 246 mLVGS~S~glFLVhsEt~--es~Yva~RPFR-VNAGaVHaYv~~Pg-gkT~YLSE--L~sG~eVLvVd---~~G~t 312 (366)
..||=-++|+.|-+.=.. .-||+..|=.+ +--+-+|.+-.... ..|-|++. |+.||+|++|| +.|.|
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT 131 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGT 131 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChH
Confidence 345556666666554333 34676665443 33344433333333 47777775 77999999999 56655
No 311
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.50 E-value=4.2e+02 Score=25.40 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=60.0
Q ss_pred eeeeeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCe--eee-----hhhhhhcccCCCceEEE
Q 017770 93 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIP-----AENIVASFQGSGKTVFA 164 (366)
Q Consensus 93 i~~l~~~~g~~~~-~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~--iIP-----lENliA~~q~~~~~l~a 164 (366)
|..|.+.+|+... -+|+.--......+|.++.+.-.. ..++++.+-..|=. --| ++.|.+.. .+-.+=.
T Consensus 4 IPaIDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGG 80 (241)
T PRK14114 4 VPAIDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGG 80 (241)
T ss_pred EEEEEEECCEEEEeeccccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEec
Confidence 3445666676542 123222222334577775554444 34565655444421 111 23333332 2446777
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKE 201 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~---~d~~ev~~l~~ 201 (366)
.+++.++++.+|. .|+|=|++.+ +||+-++++.+
T Consensus 81 GIrs~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 81 GIRSLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHH
Confidence 8999999998775 7999999999 78887777644
No 312
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=29.24 E-value=1.9e+02 Score=25.02 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..+.++++..-... .--+++..++. ....++... ...+......+++.|+|+++.+|-+..++.+..
T Consensus 44 ~~dlvild~~~~~~-~g~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 112 (227)
T PRK09836 44 DYDLIILDIMLPDV-NGWDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 (227)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 45777774332221 11223333332 234455544 334556677889999999999999988775543
No 313
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.21 E-value=1e+02 Score=28.53 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCeeeehhhhhhcccCCCceEE-EEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~-a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~ 197 (366)
+|+.+. +.++..++..+-.++ -.+++.++++.+ ++.|+|||+ ||.|+...
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 196 GVPLVT-PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred CeecCC-HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 344443 477777777666665 456888777765 578999976 67777544
No 314
>PRK09206 pyruvate kinase; Provisional
Probab=29.19 E-value=85 Score=33.36 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=102.2
Q ss_pred CCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHH------HHHH-HH
Q 017770 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA------VLAL-KE 201 (366)
Q Consensus 131 ~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~e------v~~l-~~ 201 (366)
...|++-+.|- -=.|+.+-+++++..+.+..|++...+.+-.+-+=++++. +|||++.+.|.+- +..+ ++
T Consensus 184 ~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~-~DgImVaRGDLgvelg~e~vp~~qk~ 262 (470)
T PRK09206 184 QGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA-SDGIMVARGDLGVEIPVEEVIFAQKM 262 (470)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh-CCEEEECcchhhhhcCHHHHHHHHHH
Confidence 45899999774 2237777888887544577899999999999999999999 9999999998542 2221 23
Q ss_pred hhcccccc-cc-------------eeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEe--------
Q 017770 202 YFDGRNEV-SN-------------LLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVH-------- 259 (366)
Q Consensus 202 ~~~~~~~~-~~-------------~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVh-------- 259 (366)
++...+.. .. .-.-+.|+|+.|-.. ..|.++ ==||=|-++.|-|=+.
T Consensus 263 ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVana------v~dG~D-----avMLS~ETA~G~yPveaV~~m~~I 331 (470)
T PRK09206 263 MIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANA------ILDGTD-----AVMLSGESAKGKYPLEAVSIMATI 331 (470)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHH------hhhCCc-----EEEEechhcCCCCHHHHHHHHHHH
Confidence 33221111 00 011134444443321 112111 1266666666654321
Q ss_pred -ecccc-CCCC-----CCC--C-------------eeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCC
Q 017770 260 -SECLE-SNYI-----ASR--P-------------FRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGR 311 (366)
Q Consensus 260 -sEt~e-s~Yv-----a~R--P-------------FRVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~ 311 (366)
.|++. .+|. ..+ + ..+||.+.=.|+.. |..++.+|-.|+.-.|+++-.+=+
T Consensus 332 ~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~s-G~tA~~is~~RP~~pIia~t~~~~ 404 (470)
T PRK09206 332 CERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQG-GKSARSVRKYFPDATILALTTNEK 404 (470)
T ss_pred HHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCHH
Confidence 11111 1110 011 1 25788888888885 888899999999999999887543
No 315
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.95 E-value=2.5e+02 Score=29.38 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=68.0
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 53 VWIWTESKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~~vv~~~~~---~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
+++-.+..+.+.+.+|.|+|-|+++.-|- ...+-+..|..--| +.. .+...|.+.++-..+...
T Consensus 148 vg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p------------~~~-vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 148 VSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP------------NLD-LIAGNIVTKEAALDLISV 214 (404)
T ss_pred EeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC------------CCc-EEEEecCCHHHHHHHHHc
Confidence 34433567899999999999988775431 12222223321111 111 223367888876665543
Q ss_pred cCCCCeEEEeC-----------CCCeeee-hh---hhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 130 DGQAENIVIDL-----------PDWQVIP-AE---NIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 130 ~~~~~~vvv~~-----------~DW~iIP-lE---NliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+|.|.+-- .+|- .| +. .+-..++..+..|||. +++..|+. .+|..|+|+|++-.-
T Consensus 215 --GaD~I~vG~g~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~---KALalGA~aVmvGs~ 287 (404)
T PRK06843 215 --GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEVCKNTNICIIADGGIRFSGDVV---KAIAAGADSVMIGNL 287 (404)
T ss_pred --CCCEEEECCCCCcCCcceeecCCC-CChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEcce
Confidence 577776631 1331 23 22 2222234446678875 56777765 456799999998654
No 316
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.94 E-value=1.9e+02 Score=28.80 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=59.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv 138 (366)
-..+..|-|+|+|++++++=-.|...++..... ..|-....++.-+ +.+-++.++......=|.+-
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-------------~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-------------KHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-------------HcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 346889999999999998522333333332211 1122222232333 34555555554322222222
Q ss_pred e--CCCCeee---ehhhhhhcccCCC-ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 D--LPDWQVI---PAENIVASFQGSG-KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~--~~DW~iI---PlENliA~~q~~~-~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
. .++=+.- ++..+|..+..-. ..++ -.+++.++|+.+.++ +|||++-+.
T Consensus 179 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 179 RMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred cccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 1 0121111 3667777665422 2232 246788887766555 999999876
No 317
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=28.89 E-value=4.4e+02 Score=23.86 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
..-+..|++.|+|.|=++=- -.+-|.+ +..-|..+..-.|.. + .+.=.+-+++.++-.. .+
T Consensus 16 ~~af~~A~~~Gad~vE~DV~----~T~Dg~~-----vv~HD~~l~r~t~~~-~-~v~~~t~~el~~l~~~----~~---- 76 (220)
T cd08579 16 LEALEAAIKAKPDYVEIDVQ----ETKDGQF-----VVMHDANLKRLAGVN-K-KVWDLTLEELKKLTIG----EN---- 76 (220)
T ss_pred HHHHHHHHHcCCCEEEEEee----EcCCCCE-----EEEcCCchhhccCCC-C-ChhhCCHHHHhcCcCc----cC----
Confidence 67789999999998765421 0111222 222333322211111 0 1111233443333211 11
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHH-----HHHHHHHHh-hccc-CeEEEecCCHHHHHHHHHhh
Q 017770 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPS-----EAQIFLEAL-EQGL-GGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~-----eA~~al~~L-E~G~-DGVvl~~~d~~ev~~l~~~~ 203 (366)
+.+-++--||.+++.+.+.+..+.-+.++.. =++.++.++ +.|. +-|++..-++..++.+++..
T Consensus 77 ~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~ 147 (220)
T cd08579 77 GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLD 147 (220)
T ss_pred CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHC
Confidence 3455677799999998765667888888754 133344444 4553 67899999999888877654
No 318
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=28.62 E-value=5.6e+02 Score=24.98 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=64.5
Q ss_pred EEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh-----
Q 017770 54 WIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP----- 120 (366)
Q Consensus 54 Wiw~--~~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~----- 120 (366)
|+.. .+.+.+..|..+|+|.++++-|| ++.+++ .+ +..+ .. .+..+.. .++.|.+.
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~--~v--~~~l--~~---~~~~~~~--~~VRIn~~~~~~~ 74 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARL--LV--YEAL--QT---PDYGDTE--TVVRINGLDTPFG 74 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHH--HH--HHHH--hc---cCCCCCE--EEEEECCCCChhH
Confidence 4444 46788899999999999999776 222221 01 0000 00 1112333 34455532
Q ss_pred -hhhhhhccccCCCCeEEEeCCCCeeeeh---hhhhhcc---------cCCCceEEEEcCCHHHHHHHHHHhh--cccCe
Q 017770 121 -QELQQLQPADGQAENIVIDLPDWQVIPA---ENIVASF---------QGSGKTVFAISKTPSEAQIFLEALE--QGLGG 185 (366)
Q Consensus 121 -ed~e~~~~~~~~~~~vvv~~~DW~iIPl---ENliA~~---------q~~~~~l~a~v~~~~eA~~al~~LE--~G~DG 185 (366)
+|+..+.. ...+.+++ +++=.. +.+.+.+ ....+.+++.+.|++=..-+-+++. .|+||
T Consensus 75 ~~di~~~l~--~g~~givl----PKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~ 148 (288)
T TIGR01588 75 LADIKAVVK--AGVDVVRL----PKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMG 148 (288)
T ss_pred HHHHHHHHh--cCCCEEEe----CCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceE
Confidence 34444432 23445555 111111 1111111 1124567888888877777777773 47888
Q ss_pred EEEecCCHH
Q 017770 186 IVLKVEDVK 194 (366)
Q Consensus 186 Vvl~~~d~~ 194 (366)
+.+-+.|..
T Consensus 149 l~~G~~Dls 157 (288)
T TIGR01588 149 IALGAEDYV 157 (288)
T ss_pred EEeCHHHHH
Confidence 888777553
No 319
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=28.24 E-value=56 Score=30.83 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=45.7
Q ss_pred EEecCCceeeee---eccCCCeEEEEcCCCCeeEEeeee-------EEEe------c---cceEEEEEEeeccCCCceee
Q 017770 284 VLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVGR-------VKIE------S---RPLILVEAKALALAGHSEPS 344 (366)
Q Consensus 284 v~~PggkT~YLS---EL~sG~eVLvVd~~G~tR~a~VGR-------vKIE------~---RPLlLIeAe~~~~~~g~~~s 344 (366)
+..+|+..+||. -++.||.|.++|.+|..-.+.+-. ++|. . .++-|+-|-. .+++..
T Consensus 16 i~l~~~~~~Hl~~VlR~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~l~~al~----K~~~~d 91 (240)
T TIGR00046 16 ISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIHLAIVLI----KGKKME 91 (240)
T ss_pred EEEChHHHhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEEEEEeec----CCccHH
Confidence 667899999987 789999999999988765544422 1221 0 1122333333 456666
Q ss_pred EEEeeccccCCCce
Q 017770 345 LFLWFLVCTSSSLI 358 (366)
Q Consensus 345 viLQnA~~~~~~~~ 358 (366)
.+||.|.+++-..+
T Consensus 92 ~il~katELGv~~i 105 (240)
T TIGR00046 92 FIIRKLTELGVSKI 105 (240)
T ss_pred HHHHHHHHcCCCEE
Confidence 77777777765543
No 320
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=27.84 E-value=2e+02 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..++... +..+......+++.|+++++.+|.+..++.+..
T Consensus 73 ~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i 112 (221)
T PRK15479 73 LPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDARL 112 (221)
T ss_pred CCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 3455443 334555667789999999999999988776543
No 321
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=27.79 E-value=3.3e+02 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..++..... .+......+++.|+|+++.+|-+..++...
T Consensus 74 ~~ii~l~~~-~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~ 112 (221)
T PRK10766 74 VGIILVTGR-TDSIDRIVGLEMGADDYVTKPLELRELLVR 112 (221)
T ss_pred CCEEEEECC-CcHHHHHHHHHcCCCcEEeCCCCHHHHHHH
Confidence 345544433 344556788999999999999998876543
No 322
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=27.65 E-value=39 Score=34.44 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
|--|.||.+|+.||+|.+-..-|+.-... .-+.+|+++|=
T Consensus 183 G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp----~~~~~~iImIA 222 (367)
T PLN03115 183 GVCSNFLCDLKPGAEVKITGPVGKEMLMP----KDPNATIIMLA 222 (367)
T ss_pred eehHhhHhhCCCcCEEEEEeecCCceeCC----cCCCCCEEEEe
Confidence 44578999999999999988888652111 12457888873
No 323
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=27.50 E-value=5.2e+02 Score=26.56 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=72.7
Q ss_pred cEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 51 K~vWiw~~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
-+|..-+.+.+-...|.|-|+|.++... +.+..+++..+ ++ +++..+. +.+++.....+
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~--~d-----------------~ii~tv~-~~~~~~~l~~l 249 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI--AD-----------------AIIDTVG-PATLEPSLKAL 249 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh--Cc-----------------EEEECCC-hhhHHHHHHHH
Confidence 3455567777777888888888877654 34444444332 11 2343445 78888877777
Q ss_pred CCCCeEEEeCCCC----eeeehhhhhhcccCCCceE-EEEcCCHHHHHHHHHHh-hcccCeEEEecCCHHHHHH
Q 017770 131 GQAENIVIDLPDW----QVIPAENIVASFQGSGKTV-FAISKTPSEAQIFLEAL-EQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 131 ~~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l-~a~v~~~~eA~~al~~L-E~G~DGVvl~~~d~~ev~~ 198 (366)
.....+++-+..- ..+|.-++|.. +-+| -..+.+..|.+.+|.-. |+++.=.+...-.+++|.+
T Consensus 250 ~~~G~~v~vG~~~~~~~~~~~~~~li~~----~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~ 319 (339)
T COG1064 250 RRGGTLVLVGLPGGGPIPLLPAFLLILK----EISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINE 319 (339)
T ss_pred hcCCEEEEECCCCCcccCCCCHHHhhhc----CeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHH
Confidence 7777777766653 33667777764 2233 33456677777777654 4555555544554555443
No 324
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.41 E-value=4.9e+02 Score=23.86 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCHHH-HHHHHHHhhcccCeEEEecC----CHHHHHHHHHhhc
Q 017770 167 KTPSE-AQIFLEALEQGLGGIVLKVE----DVKAVLALKEYFD 204 (366)
Q Consensus 167 ~~~~e-A~~al~~LE~G~DGVvl~~~----d~~ev~~l~~~~~ 204 (366)
.+.++ .+.+-.+.|.|+|.|-|... .|.++.++-+.+.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 34444 45566678899999988643 5777777655553
No 325
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=27.34 E-value=3.5e+02 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.3
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEE
Q 017770 279 PVHAYVLVPGGKTCYLSELKSGKEVIVV 306 (366)
Q Consensus 279 aVHaYv~~PggkT~YLSEL~sG~eVLvV 306 (366)
-=|.++..+++ ...|+-||.|.++
T Consensus 53 eEHg~l~~~~~----~~~~~vGd~v~ii 76 (94)
T PF14031_consen 53 EEHGILRLPDG----ADRLKVGDKVEII 76 (94)
T ss_dssp SS-EEEE-STT----GCGT-TT-EEEEE
T ss_pred cceeEEECCCC----CCCCCCCCEEEEE
Confidence 34999999988 3357999999875
No 326
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=27.34 E-value=98 Score=30.82 Aligned_cols=134 Identities=13% Similarity=0.196 Sum_probs=89.0
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChh
Q 017770 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQ 121 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~e 121 (366)
.-++.+++.+|..|+.++++|- +++|.++++-+-.+..|.-..+= +-+..-+..+..+++|++.+
T Consensus 76 ~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~ 155 (255)
T COG3836 76 VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRA 155 (255)
T ss_pred CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHH
Confidence 3478999999999999999995 56788887777777766333211 23345567789999999998
Q ss_pred hhhhhcc--ccCCCCeEEEeCCC--------Ce------eeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccC
Q 017770 122 ELQQLQP--ADGQAENIVIDLPD--------WQ------VIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 122 d~e~~~~--~~~~~~~vvv~~~D--------W~------iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~D 184 (366)
-++.+-. .....|-|++-..| |+ -=+.|+++++.-.. +|..+ -..+++.|+-+ |+.|+.
T Consensus 156 gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aa-GKaagil~~~p~~a~~y---l~lGa~ 231 (255)
T COG3836 156 GLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAA-GKAAGILAADPADARRY---LALGAT 231 (255)
T ss_pred HHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhc-CCccccccCCHHHHHHH---HHhCCe
Confidence 8777543 23567888874433 11 12456777665332 33333 34566777655 578998
Q ss_pred eEEEecCCHH
Q 017770 185 GIVLKVEDVK 194 (366)
Q Consensus 185 GVvl~~~d~~ 194 (366)
=|.+-.|..-
T Consensus 232 fvavG~D~~l 241 (255)
T COG3836 232 FVAVGSDTGL 241 (255)
T ss_pred EEEEeccHHH
Confidence 8888776543
No 327
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.29 E-value=6.1e+02 Score=24.95 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceE--------EEe-------ccCceEEEE
Q 017770 194 KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGL--------LVG-------SFARGLFLV 258 (366)
Q Consensus 194 ~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGm--------LVG-------S~S~glFLV 258 (366)
.|-.+|++.+.... ...... ..|+|....+-..-+.+-||--+.=.--.|| ||| ++|.-+.|.
T Consensus 98 ~EN~rLr~LL~~~~-~~~~~~-i~A~Vi~r~~~~~~~~i~IdkGs~dGV~~g~~Vi~~~~GLVG~V~~V~~~~S~V~lit 175 (283)
T TIGR00219 98 QENVRLRELLNSPL-SSDEYK-ISAEVIYLNYDNYSTQVVINKGFNDGVYKDMPVIADGKGLVGKVVSVGSNTSRVLLLT 175 (283)
T ss_pred HHHHHHHHHhcCcc-cccCCc-eEEEEEEeCCCccccEEEEcCccccCCCCCCEEEcCCCceEEEEEEECCCeEEEEEEE
Confidence 46677888775432 222223 8999999999999999999977654333333 443 234444443
Q ss_pred eeccccCCCCCCCCeeeecCCceeEEEecC-Cc---e--eee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 017770 259 HSECLESNYIASRPFRVNAGPVHAYVLVPG-GK---T--CYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 321 (366)
Q Consensus 259 hsEt~es~Yva~RPFRVNAGaVHaYv~~Pg-gk---T--~YL---SEL~sG~eVLvVd~~G~tR~-a~VGRvK 321 (366)
+.. . .=|.++.-.-.+..+.--+ |. . .|+ ++++.||.|+.-+.+|..=. ..||+|+
T Consensus 176 d~~-~------~v~v~v~~t~~~gi~~G~~~g~~~~l~l~~~~~~~~v~~GD~VvTSGlgg~fP~Gl~VG~V~ 241 (283)
T TIGR00219 176 DYT-N------FVPAQILRSDFRGLIEGNGYGKTLEMNLVNRPAEKDIKKGDLIVTSGLGGRFPEGYPIGVVT 241 (283)
T ss_pred cCC-C------ceEEEEecCCceEEEEecCCCCCcEEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 322 1 2244554444444443221 22 2 233 46899999999888886554 7899986
No 328
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=27.21 E-value=51 Score=33.47 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCC-CeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKG-RQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G-~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|--|.||++|+.||.|-+.-..| ..+ .- .-+.+|+++|=+
T Consensus 214 G~~S~~L~~l~~Gd~v~v~~~~~~~F~---lp--~~~~~piImIa~ 254 (406)
T cd06202 214 GVCSTWLNGLTPGDTVPCFVRSAPSFH---LP--EDPSVPVIMVGP 254 (406)
T ss_pred ccHHHHHHhCCCCCEEEEEEeeCCccC---CC--CCCCCCEEEEcC
Confidence 66789999999999998753322 221 10 123589999843
No 329
>PF04085 MreC: rod shape-determining protein MreC; InterPro: IPR007221 MreC (murein formation C) is involved in the rod shape determination in Escherichia coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.; GO: 0008360 regulation of cell shape; PDB: 2J5U_B 2QF4_B 2QF5_A.
Probab=27.16 E-value=1.9e+02 Score=25.58 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=31.2
Q ss_pred CeeeecCCceeEEEecCCce-----eee---eeccCCCeEEEEcCCCCee-EEeeeeEE
Q 017770 272 PFRVNAGPVHAYVLVPGGKT-----CYL---SELKSGKEVIVVDQKGRQR-TAVVGRVK 321 (366)
Q Consensus 272 PFRVNAGaVHaYv~~PggkT-----~YL---SEL~sG~eVLvVd~~G~tR-~a~VGRvK 321 (366)
|.++.-...+.++.-.|..+ .|| ++++.||.|+.-+.+|..- -..||+|+
T Consensus 61 ~v~i~~~~~~Gi~~G~~~~~~~~~l~~i~~~~~i~~GD~V~TSG~~~~fP~Gi~VG~V~ 119 (152)
T PF04085_consen 61 SVKIERSGDRGILRGDGSNTGLLKLEYIPKDADIKKGDIVVTSGLGGIFPPGIPVGTVS 119 (152)
T ss_dssp EEEEECTTEEEEEEEEETTTTEEEEEEECTTS---TT-EEEEE-TTSSS-CCEEEEEEE
T ss_pred EEEEecCCeeEEEEeCCCCCceEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 56666666666665555554 444 4688999999988888544 48999986
No 330
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=27.07 E-value=5e+02 Score=23.85 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=62.2
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE--E--ec
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII--E--VS 118 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~~--~--v~ 118 (366)
.+|+=- ++.+-+..+++.|++.+++... +.++.+++.+. ..+-.+-+.++.. .++ -.+.... + -.
T Consensus 76 pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~-~~~-~~v~~~~~~~~~~~ 153 (232)
T TIGR03572 76 PLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELD-GSD-YKVYSDNGRRATGR 153 (232)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCC-CCc-EEEEECCCcccCCC
Confidence 356532 4667777789999999998863 34444544432 1111122222210 000 0111100 0 01
Q ss_pred ChhhhhhhccccCCCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 119 TPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++.++-.... ....+.+++...+- +=..+|.+-+-.+..+..|++. +++.+|++.++ .+.|+|||++.+
T Consensus 154 ~~~~~~~~~~-~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l--~~~gadgV~vg~ 228 (232)
T TIGR03572 154 DPVEWAREAE-QLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA--LEAGASAVAAAS 228 (232)
T ss_pred CHHHHHHHHH-HcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH--HHcCCCEEEEeh
Confidence 1222111111 13467777765211 1122333322222234455554 57888887644 345999999865
No 331
>PRK10537 voltage-gated potassium channel; Provisional
Probab=27.07 E-value=4.3e+02 Score=27.24 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=45.1
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~----~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.....++++.++++-. .+++.+++...| .-+|+.+. -.+.+.++++.+++.++++.+ .+.|+|-|+-
T Consensus 285 I~GD~td~e~L~~AgI--~~A~aVI~~t~d----D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L---~~~GaD~VIs 355 (393)
T PRK10537 285 IPGDSSDSAVLKKAGA--ARARAILALRDN----DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKI---KRVHPDMIFS 355 (393)
T ss_pred EEeCCCCHHHHHhcCc--ccCCEEEEcCCC----hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHH---HhcCCCEEEC
Confidence 3444455665555443 467788875554 34555432 223457899999999987766 4579999775
Q ss_pred ecCC
Q 017770 189 KVED 192 (366)
Q Consensus 189 ~~~d 192 (366)
..+.
T Consensus 356 p~~l 359 (393)
T PRK10537 356 PQLL 359 (393)
T ss_pred HHHH
Confidence 5443
No 332
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=26.93 E-value=84 Score=22.85 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKI 322 (366)
.-+.+||+.++.||.+.+ +++..-+||-++
T Consensus 35 ~~~i~f~~p~~~gd~l~~-----~~~v~~~g~~~~ 64 (79)
T PF03061_consen 35 ELSIDFLRPVRPGDTLRV-----EARVVRVGRKSF 64 (79)
T ss_dssp EEEEEESS-BBTTSEEEE-----EEEEEEEESSEE
T ss_pred EEEEEEccccCCCeEEEE-----EEEEEEECCEEE
Confidence 678899999999999998 577777776654
No 333
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.89 E-value=1.3e+02 Score=28.59 Aligned_cols=127 Identities=15% Similarity=0.060 Sum_probs=63.1
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcC----cch--------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-
Q 017770 52 RVWIWTESKQVMTAAVERGWNTFVFLS----ENQ--------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (366)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~vv~~----~~~--------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~- 118 (366)
-+|+.-.+-+.++ -|+|+++|++ .|. +-+..+++.+ .-.+..|.++=..|..++.+.+..
T Consensus 55 Pvilfp~~~~~i~----~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~---~e~ip~gYiv~~~~~~v~~v~~a~~ 127 (205)
T TIGR01769 55 PVILFPGNVNGLS----RYADAVFFMSLLNSADTYFIVGAQILGAITILKLN---LEVIPMAYLIVGPGGAVGYVGKARE 127 (205)
T ss_pred CEEEECCCccccC----cCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcC---CcccceEEEEECCCCceeeecCccc
Confidence 3666555554444 5688888885 221 2221112222 111222333323333444443333
Q ss_pred ----Chhhhhhhcc--ccCCCCeEEEeCCC--Ceeeehhhhh--hcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 119 ----TPQELQQLQP--ADGQAENIVIDLPD--WQVIPAENIV--ASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 119 ----~~ed~e~~~~--~~~~~~~vvv~~~D--W~iIPlENli--A~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.+|+.+..+. .....+++-++..+ ..-++.|-+- .+.-+...-+-...+|.++|+. +++.|+|||++
T Consensus 128 ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~---l~~~GAD~VVV 204 (205)
T TIGR01769 128 IPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYE---IVLAGADAIVT 204 (205)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHH---HHHcCCCEEEe
Confidence 3555444333 23457788887632 2335544331 2111233344556788888875 56889999986
No 334
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=26.79 E-value=1.1e+02 Score=26.49 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCCee-eehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQV-IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~i-IPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-... -.--.++..++.. ...++... ...+......+++.|+|+++.+|.++.++.+.
T Consensus 44 ~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 113 (227)
T TIGR03787 44 LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLAR 113 (227)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 45777774322110 0112233333322 33455544 33455567788999999999999998877653
No 335
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.78 E-value=4e+02 Score=26.77 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=80.5
Q ss_pred chhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG-~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~v 136 (366)
.-|++.+||.+| .|+.|.-.|-+ | +++..+.+++.+-|-++--+++.+- ||-++.+ ++..-+
T Consensus 77 ~SEi~~t~l~~g~iDaaVivcDga------G------TVI~~nP~lVQGigGR~SGLv~TtPIpevi~~I----e~~gGi 140 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVCDGA------G------TVITTNPALVQGLGGRISGLIETSPIPEVIEKI----EDEGGI 140 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEecCc------C------eEEeCCHHHHhhccceeeeeeeccccHHHHHHH----HhcCCE
Confidence 478999999999 67655443211 1 2233445555555544444434332 3433333 344568
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEec--C--CHHHHHHHHHhh
Q 017770 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKV--E--DVKAVLALKEYF 203 (366)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl~~--~--d~~ev~~l~~~~ 203 (366)
|++..+-+|=|.+-+.-++.-.-.+|...+.++++|+..-+.- |.|++=+++.. . +.++..++.++.
T Consensus 141 VLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~~if~VHtTGis~eea~~~~~~a 212 (259)
T TIGR03275 141 VLDPDTATIDQIKGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDIIIFAVHTTGIDREDAEEVVQYA 212 (259)
T ss_pred EeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhccccCCcEEEEEEECCCCCHHHHHHHHHhh
Confidence 8988888999999988887766778999999999998765432 23777766542 2 235555554444
No 336
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.59 E-value=66 Score=32.82 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=66.3
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eeecCC----------ccccCCCCeeEEEEEecChhhhhhhc
Q 017770 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFIKEG----------EVYDSGDRRVGSIIEVSTPQELQQLQ 127 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~---l~~~~g----------~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (366)
+-.-++||.|-+++++++.-......+-.+ +++ ++..+. ..++.-|..+ .++...+.++++.+.
T Consensus 61 e~~la~Le~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~~d~~~l~~~l 137 (386)
T PF01053_consen 61 EQRLAALEGGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDPTDLEALEAAL 137 (386)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEESTTSHHHHHHHH
T ss_pred HHHHHHhhcccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCchhHHHHHhhc
Confidence 444589999999999998644332222222 221 222222 2334456553 344445555555433
Q ss_pred cccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017770 128 PADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 128 ~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (366)
.. +.+.|.++.. ..+++.++.|.+.++..+ .+...|.|.=-.-..+..|+.|+|
T Consensus 138 ~~--~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaD 194 (386)
T PF01053_consen 138 RP--NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGAD 194 (386)
T ss_dssp CT--TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-S
T ss_pred cc--cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCce
Confidence 32 5677788775 578999999988776553 466777766555577888999998
No 337
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.46 E-value=57 Score=33.64 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=41.7
Q ss_pred ChhhhhhhccccC---CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017770 119 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 119 ~~ed~e~~~~~~~---~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (366)
.++|.+++..... ..|+++|+...=--.=.-+.|..+...-.++.-.+.|..-++.+...++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4677777776665 58999998774332233344444333222344445555555566667788999984
No 338
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=26.21 E-value=3.9e+02 Score=22.99 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
...+.++++..-...=.+ .++..++. ....++.... ..+......+++.|+|+.+.+|-++.++.+.-
T Consensus 43 ~~~dlvild~~l~~~~g~-~l~~~lr~~~~~~pii~ls~-~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i 112 (223)
T PRK10816 43 HLPDIAIVDLGLPDEDGL-SLIRRWRSNDVSLPILVLTA-RESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 (223)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 346777774332221111 23333322 2344555443 34445567889999999999999988765533
No 339
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=26.13 E-value=98 Score=29.37 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=31.4
Q ss_pred hhhhhcccCCCceEEEE-c--CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 149 ENIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 149 ENliA~~q~~~~~l~a~-v--~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
+.++..++..+-.+++- + ++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l---~~~GVdgIi--TD~p~~~~~ 282 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPENAKTQ---VKAGVDAVI--VDSVLAIRR 282 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHHHHHHH---HHcCCCEEE--ECCHHHHHH
Confidence 35667766666677664 4 777777654 567999977 888887654
No 340
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=26.03 E-value=72 Score=30.36 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|--|.||.+|+.||.|.+-...|..-... +-..+|+++|-+
T Consensus 83 G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~----~~~~~~~vlIAg 123 (267)
T cd06182 83 GVCSNFLAGLQLGAKVTVFIRPAPSFRLP----KDPTTPIIMVGP 123 (267)
T ss_pred cchhHHHhhCCCCCEEEEEEecCCcccCC----CCCCCCEEEEec
Confidence 45699999999999999999888322210 112578888754
No 341
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.96 E-value=1.3e+02 Score=28.10 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=30.9
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
..++..++..+-++++ .+++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l---~~~Gvd~Ii--TD~p~~~~~ 253 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRL---INWGVDGMF--TNYPDRLKE 253 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 5777777777766655 46677777654 567999977 666765543
No 342
>PTZ00300 pyruvate kinase; Provisional
Probab=25.82 E-value=1e+02 Score=32.62 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=96.2
Q ss_pred CCCCeEEEeCCC--CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHH------HHHH-HH
Q 017770 131 GQAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA------VLAL-KE 201 (366)
Q Consensus 131 ~~~~~vvv~~~D--W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~e------v~~l-~~ 201 (366)
...+++.+.|=. =.+.-+-+++... +.+..|++...+.+--+-.=+++ .|+|||++.+.|.+- +..+ +.
T Consensus 159 ~gvd~I~~SfVrsaeDv~~vr~~l~~~-~~~~~IiaKIEt~eav~nldeI~-~~~DgImVaRGDLgvei~~e~vp~~Qk~ 236 (454)
T PTZ00300 159 QGVDMIFASFIRSAEQVGEVRKALGAK-GGDIMIICKIENHQGVQNIDSII-EESDGIMVARGDLGVEIPAEKVVVAQKI 236 (454)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHH-HhCCEEEEecchhhhhcChHHHHHHHHH
Confidence 458888886641 1244445555432 34668999999999999999999 899999999998642 2111 33
Q ss_pred hhccccc-ccce-------------eeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEe--------
Q 017770 202 YFDGRNE-VSNL-------------LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVH-------- 259 (366)
Q Consensus 202 ~~~~~~~-~~~~-------------l~L~~atVt~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S~glFLVh-------- 259 (366)
++...+. +... -.-+.|+|+.|-.. ..|.+ +-=||=|-++.|-|=+.
T Consensus 237 Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanA------v~dG~-----DavMLS~ETA~G~yP~eaV~~m~~I 305 (454)
T PTZ00300 237 LISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANA------VFNGA-----DCVMLSGETAKGKYPNEVVQYMARI 305 (454)
T ss_pred HHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHH------HHhCC-----cEEEEechhcCCCCHHHHHHHHHHH
Confidence 3322111 1110 01134444443321 11111 12266666776655322
Q ss_pred ---eccccCCC------CC--CCCe---------------eeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCC
Q 017770 260 ---SECLESNY------IA--SRPF---------------RVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKG 310 (366)
Q Consensus 260 ---sEt~es~Y------va--~RPF---------------RVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G 310 (366)
.|.....| .. ..|+ ++||.+.=.|+.. |...+.+|-.|+.-.|+++-.+=
T Consensus 306 ~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~s-G~tA~~vs~~RP~~pIia~t~~~ 381 (454)
T PTZ00300 306 CLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNT-GRSARLVAKYRPNCPIVCVTTRL 381 (454)
T ss_pred HHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCH
Confidence 22211111 01 1122 6778888888886 88889999999999999987653
No 343
>PLN02252 nitrate reductase [NADPH]
Probab=25.72 E-value=2.9e+02 Score=31.73 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.3
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe---
Q 017770 216 MKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV--- 286 (366)
Q Consensus 216 ~~atVt~V~~vGmGD-RVCVDtcS-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~--- 286 (366)
.+++|++++++.-.= +..+.+-+ -+.+|+=+.|.-. ...|....+|.+..+-. .-|-+.=.|..
T Consensus 635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~------~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~ 707 (888)
T PLN02252 635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT------INGKLCMRAYTPTSSDD-EVGHFELVIKVYFK 707 (888)
T ss_pred EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe------cCCeEEEeeeEecccCC-CCCEEEEEEEEEec
Confidence 468899999886442 33344322 2445554443311 11222234564333210 12334444433
Q ss_pred -------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe-----ccceEEEEE
Q 017770 287 -------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE-----SRPLILVEA 332 (366)
Q Consensus 287 -------P-ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE-----~RPLlLIeA 332 (366)
| |.-|+||..|+.||+|.+-..-|+..-.-=|+..++ .||+++|=+
T Consensus 708 ~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAG 766 (888)
T PLN02252 708 NVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAG 766 (888)
T ss_pred cccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEec
Confidence 2 668899999999999999999997532111233343 478888754
No 344
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.55 E-value=3.4e+02 Score=25.59 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=58.2
Q ss_pred hhHHHHHHHhC-CcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 60 KQVMTAAVERG-WNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 60 K~~vT~ALEsG-~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
-+.+..|+++| ++.|.++..+ .++++++..+.. ..| +.+.|.+.-|+-. . -.
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-------------~~g----v~liINd~~dlA~---~-~~ 87 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQ-------------EAG----AAALIAGDSRIAG---R-VK 87 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-------------HhC----CEEEEeCHHHHHH---H-hC
Confidence 46889999999 7999987543 123333333311 111 2234455433222 1 12
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++-|=+...| .|++..-..+. ...++.. .++.+||+. +.+.|+|=|.+-|
T Consensus 88 adGVHLg~~d---~~~~~~r~~~~--~~~iiG~s~~~s~~~a~~---A~~~gaDYv~~Gp 139 (221)
T PRK06512 88 ADGLHIEGNL---AALAEAIEKHA--PKMIVGFGNLRDRHGAME---IGELRPDYLFFGK 139 (221)
T ss_pred CCEEEECccc---cCHHHHHHhcC--CCCEEEecCCCCHHHHHH---hhhcCCCEEEECC
Confidence 4445552223 46776666553 3467776 567887755 5679999999843
No 345
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.29 E-value=3.3e+02 Score=27.84 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=57.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017770 60 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (366)
-+.+..|++.|++.|.....+. +.++++..+.. .. +..+-|.+.-|+... -.+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-------------~~----~~~lIIND~vdlAl~----~~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-------------RY----GALFIVNDRVDIALA----VDA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------Hh----CCeEEEeChHHHHHH----cCC
Confidence 4579999999999998875432 33444444311 01 123344554443222 133
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
+-|=+...| .|.+..-..+ +.+.-|-+.+.|.+|++.+ .+.|+|-|.+
T Consensus 219 DGVHLgq~d---l~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A---~~~GaDYI~l 266 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQLL-GPEKIIGRSTTNPEEMAKA---IAEGADYIGV 266 (347)
T ss_pred CEEEeChhh---cCHHHHHHhc-CCCCEEEEecCCHHHHHHH---HHcCCCEEEE
Confidence 455553334 4554443322 3344566778888887554 5789999987
No 346
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=25.29 E-value=1e+02 Score=27.09 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=39.3
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccceE
Q 017770 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 328 (366)
Q Consensus 273 FRVNAGaVH-----aYv~~PggkT~YLSEL~sG~eVLvVd~~-G~tR~a~VGRvKIE~RPLl 328 (366)
.-|+.|++. |-++.||= +.+=.+++.||.|.|++.+ | +..-||++++-..-|.
T Consensus 72 v~Vd~~a~~~l~~Ga~lm~pGV-~~~~~~~~~Gd~V~I~~~~~~--~~vavG~a~~ss~ei~ 130 (150)
T TIGR03684 72 VVVDEGAVKFIINGADIMAPGI-VSADPSIKEGDIVFVVDETHR--KPLAVGIALMDAEEME 130 (150)
T ss_pred EEECccHHHHHhcCcccccCce-ecCCCCCCCCCEEEEEECCCC--eEEEEEEEeeCHHHHh
Confidence 677777765 44555543 3555689999999999976 6 5689999999887664
No 347
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=25.18 E-value=6.1e+02 Score=27.42 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=71.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccc----------------eeeeeeeeecCCc--------cccCCCCeeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWST----------------IALLDPLFIKEGE--------VYDSGDRRVGS 113 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~-~~~~~l~~----------------i~~i~~l~~~~g~--------~~~~~gk~v~~ 113 (366)
+......+.+.|.+.++..+-.. ++...+.. ...++.++++|.. .+...|-.+.
T Consensus 617 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~- 695 (919)
T PRK11107 617 EQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVV- 695 (919)
T ss_pred chhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEE-
Confidence 45666788899999888776432 22222211 1112335556652 2333443322
Q ss_pred EEEecChhhhhhhccccCCCCeEEEeCCCCee--eehhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 114 ~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i--IPlENliA~~-q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
...+.++.-.... ....|.++++..-+.. +-+-..|.+. ......+++.... .+......+++.|+|+++.+|
T Consensus 696 --~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~-~~~~~~~~~~~~G~~~~l~KP 771 (919)
T PRK11107 696 --LCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAH-AMAGERERLLSAGMDDYLAKP 771 (919)
T ss_pred --EECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCC-CCHHHHHHHHHcCCCeEeeCC
Confidence 3345444222222 2346778875442221 1111222221 1223456665544 334556788999999999999
Q ss_pred CCHHHHHHH
Q 017770 191 EDVKAVLAL 199 (366)
Q Consensus 191 ~d~~ev~~l 199 (366)
-++.++...
T Consensus 772 ~~~~~L~~~ 780 (919)
T PRK11107 772 IDEAMLKQV 780 (919)
T ss_pred CCHHHHHHH
Confidence 998876543
No 348
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.01 E-value=2e+02 Score=27.75 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
.+.-|+| ..|+ ++-.++..--.+..++-...+..+......+|..|+..++..|.+.+++.++
T Consensus 19 ~~~~v~~-~~~~----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~ 81 (322)
T TIGR03815 19 RAPLVLV-DADM----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVEL 81 (322)
T ss_pred cCCeEEE-Cchh----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHH
Confidence 3566666 5555 4555554333445577777777789999999999999999999998875543
No 349
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=24.95 E-value=24 Score=30.59 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEE-EeccceEEEEEE
Q 017770 284 VLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVK-IESRPLILVEAK 333 (366)
Q Consensus 284 v~~PggkT~YLSEL~sG~eVLvVd~~-G~tR~a~VGRvK-IE~RPLlLIeAe 333 (366)
|.+++|. +=+.+++.||.||..|.. |+...-.|-++- -+...|+-|+.+
T Consensus 2 V~T~~G~-k~Ie~I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~ 52 (130)
T PF07591_consen 2 VHTADGL-KPIEDIKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLE 52 (130)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 5678884 899999999999999954 555544444432 234556655443
No 350
>PRK07695 transcriptional regulator TenI; Provisional
Probab=24.84 E-value=5.2e+02 Score=23.30 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=55.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~---~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
.+... ++++|++.+.++..+. ++.+....+.. -|.. ...+.|.+.-++.... ..+-+
T Consensus 18 ~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~--------------~~~~-~~~liin~~~~la~~~----~~~gv 77 (201)
T PRK07695 18 VAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLK--------------KGVP-ASKLIINDRVDIALLL----NIHRV 77 (201)
T ss_pred HHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHH--------------hCCC-CCeEEEECHHHHHHHc----CCCEE
Confidence 34554 8999999999986432 12111112111 1111 1123455544322211 23445
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
-+...| .|++.+...+. +..|-+.+.+.+|++ .+.+.|+|-+++.+
T Consensus 78 Hl~~~~---~~~~~~r~~~~--~~~ig~s~~s~e~a~---~a~~~Gadyi~~g~ 123 (201)
T PRK07695 78 QLGYRS---FSVRSVREKFP--YLHVGYSVHSLEEAI---QAEKNGADYVVYGH 123 (201)
T ss_pred EeCccc---CCHHHHHHhCC--CCEEEEeCCCHHHHH---HHHHcCCCEEEECC
Confidence 453333 35565555442 346778888888865 45688999998754
No 351
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.77 E-value=5e+02 Score=28.19 Aligned_cols=118 Identities=11% Similarity=0.008 Sum_probs=67.3
Q ss_pred cEEEE--EeCc-hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhc
Q 017770 51 KRVWI--WTES-KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (366)
Q Consensus 51 K~vWi--w~~~-K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (366)
+.+.| ..+- +.+...-.+.|.+.++++.+ .+.++++.+- |.+ ..+...++++-++++-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~ag 461 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHD-PDHIETLRKF-----------------GMK-VFYGDATRMDLLESAG 461 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECC-HHHHHHHHhc-----------------CCe-EEEEeCCCHHHHHhcC
Confidence 44555 2232 33444445568888887764 5556555442 221 3555667776655543
Q ss_pred cccCCCCeEEEeCCCCee-eehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 128 PADGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 128 ~~~~~~~~vvv~~~DW~i-IPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
..+++.+|+...|.+. +-+= ..|+-...+.++++.++|.++++.. .+.|+|-|+-.+-+.
T Consensus 462 --i~~A~~vvv~~~d~~~n~~i~-~~ar~~~p~~~iiaRa~d~~~~~~L---~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 462 --AAKAEVLINAIDDPQTSLQLV-ELVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPERETFEG 522 (621)
T ss_pred --CCcCCEEEEEeCCHHHHHHHH-HHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEehhhHhH
Confidence 2467778887776532 1111 1222223456899999999887654 457999886555433
No 352
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=24.70 E-value=2.6e+02 Score=20.40 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 170 ~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
.+.......++.|+++++.+|-+..++.+
T Consensus 90 ~~~~~~~~~~~~g~~~~i~~p~~~~~l~~ 118 (129)
T PRK10610 90 AKKENIIAAAQAGASGYVVKPFTAATLEE 118 (129)
T ss_pred CCHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 34455678899999999999998876644
No 353
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.61 E-value=2.7e+02 Score=26.30 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=41.4
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCe------eee-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE
Q 017770 118 STPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW~------iIP-lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.+|.++-+.... . .+.+++-..|=+ ..+ ++.+... ....+.+ .+++.+|++.++. .|+|+|++
T Consensus 30 ~dp~~~a~~~~~-~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~---~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSE-Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYE---IGVENVII 101 (228)
T ss_pred CCHHHHHHHHHH-h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHH---CCCCEEEE
Confidence 466665443333 2 565665444422 121 2333332 2333444 6999999998765 59999999
Q ss_pred ecCC--HHHHHH
Q 017770 189 KVED--VKAVLA 198 (366)
Q Consensus 189 ~~~d--~~ev~~ 198 (366)
-+.- |+-+++
T Consensus 102 Gtaa~~~~~l~~ 113 (228)
T PRK04128 102 GTKAFDLEFLEK 113 (228)
T ss_pred CchhcCHHHHHH
Confidence 7664 444433
No 354
>PF12264 Waikav_capsid_1: Waikavirus capsid protein 1; InterPro: IPR024379 This entry represents capsid protein 1 of Rice tungro spherical virus [].
Probab=24.20 E-value=78 Score=29.96 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=43.4
Q ss_pred ccCCCeEEEEcCCCC-eeEEeeeeEEEeccceEEEEEEeeccCCCcee---eEEEeeccccCCCcee
Q 017770 297 LKSGKEVIVVDQKGR-QRTAVVGRVKIESRPLILVEAKALALAGHSEP---SLFLWFLVCTSSSLIP 359 (366)
Q Consensus 297 L~sG~eVLvVd~~G~-tR~a~VGRvKIE~RPLlLIeAe~~~~~~g~~~---sviLQnA~~~~~~~~~ 359 (366)
++-|.-.-+-|+.|- ||.-++--|...--|=+.|||... .-.++ +-..|.++|+|+|--|
T Consensus 86 mHGGTL~aAWDA~~~AT~q~Iat~v~Lt~LP~~~i~A~~s---S~~t~~V~~p~iQ~~iC~SGSE~S 149 (197)
T PF12264_consen 86 MHGGTLCAAWDALGCATRQGIATMVQLTGLPSMTIEAHSS---SITTLTVTSPAIQSQICLSGSEHS 149 (197)
T ss_pred cCCceEEEeeccccchhhhhhhhheeecCCCceeEEeccC---ceeEEEecCccceeeeeecCCccc
Confidence 344555566777773 677788889999999999999983 22233 3368999999998654
No 355
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.13 E-value=5.5e+02 Score=24.30 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+++.+.+|.|+..+=++-.+.+-.+.+..+..-.| +..+|+= .|.++|+.+.+... .++++|--
T Consensus 19 ~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~------------~~~vGAG-TVl~~e~a~~ai~a--GA~FivSP 83 (201)
T PRK06015 19 VPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE------------EAIVGAG-TILNAKQFEDAAKA--GSRFIVSP 83 (201)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC------------CCEEeeE-eCcCHHHHHHHHHc--CCCEEECC
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC----CHHHHHHHHHhh
Q 017770 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE----DVKAVLALKEYF 203 (366)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~----d~~ev~~l~~~~ 203 (366)
..| +.++...+..+--.+-.+-|+.|+ ..+++.|+|-|=+-|- .++-++.|+..+
T Consensus 84 ~~~------~~vi~~a~~~~i~~iPG~~TptEi---~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl 142 (201)
T PRK06015 84 GTT------QELLAAANDSDVPLLPGAATPSEV---MALREEGYTVLKFFPAEQAGGAAFLKALSSPL 142 (201)
T ss_pred CCC------HHHHHHHHHcCCCEeCCCCCHHHH---HHHHHCCCCEEEECCchhhCCHHHHHHHHhhC
No 356
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=24.12 E-value=1.1e+02 Score=28.93 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=26.4
Q ss_pred CCCcEEEEEe---CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT---ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~---~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+.+++|| .+.+.+...++-|+|+++.+..
T Consensus 243 ~~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 243 RSGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred HCCcEEEEECCccCCHHHHHHHHHcCCCEEEECCH
Confidence 3567899997 3588999999999999998653
No 357
>PLN02363 phosphoribosylanthranilate isomerase
Probab=23.84 E-value=6.9e+02 Score=24.39 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=43.1
Q ss_pred EEEEe---CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChh
Q 017770 53 VWIWT---ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQ 121 (366)
Q Consensus 53 vWiw~---~~K~~vT~ALEsG~~--~~vv~~~~-----~~~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e 121 (366)
.||.- .+.+-+..|.+.|+| +|||.+.. .+.++++.+. + ++. -+.|+++ .=.+++
T Consensus 47 ~~VKICGit~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~--l-----------~~~~~~~VgVf-v~~~~~ 112 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQV--A-----------REGGAKPVGVF-VDDDAN 112 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh--c-----------cccCccEEEEE-eCCCHH
Confidence 35644 689999999999999 58875433 3555555442 1 111 2345555 234555
Q ss_pred hhhhhccccCCCCeEEEeCC
Q 017770 122 ELQQLQPADGQAENIVIDLP 141 (366)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~ 141 (366)
++.+++.. ..-+.|-+++.
T Consensus 113 ~I~~~~~~-~~ld~VQLHG~ 131 (256)
T PLN02363 113 TILRAADS-SDLELVQLHGN 131 (256)
T ss_pred HHHHHHHh-cCCCEEEECCC
Confidence 55554443 34577888764
No 358
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.80 E-value=1.3e+02 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=18.5
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017770 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (366)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~a~VGRvKIE 323 (366)
-|+.||.|.+.+..|+.+ .++|+-
T Consensus 44 gi~~Gd~V~v~s~~G~~~----~~v~~~ 67 (116)
T cd02786 44 GIADGDLVVVFNDRGSVT----LRAKVT 67 (116)
T ss_pred CCCCCCEEEEEcCCeEEE----EEEEEC
Confidence 478899999999999653 466653
No 359
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=23.63 E-value=2.4e+02 Score=25.78 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred eee-hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cc-cCeEEEecCCHHHHHHHHHhh
Q 017770 145 VIP-AENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QG-LGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 145 iIP-lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE-~G-~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.|| ||.+++.+.+ +..+.-+.++.+.++..+..++ .| .+-|++..-|+..++.+++..
T Consensus 78 ~iPtL~evl~~~~~-~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 78 LIPTLEEVFRALPN-DAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred cCCCHHHHHHhcCC-CcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 466 8999998854 4579999998877777777776 35 578999999999988887764
No 360
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.61 E-value=3.9e+02 Score=26.84 Aligned_cols=115 Identities=14% Similarity=0.237 Sum_probs=74.5
Q ss_pred chhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG-~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
--|++.+||.+| .|+.|.--|-+ .+++..+.+++.+-|-++--+++.+- - +++....++..-+|
T Consensus 77 aSEil~t~l~~g~iDaaV~vcdGA------------GTVI~~~P~lVQGiGGrmSGLv~T~P-I--~evi~~Ie~~ggiV 141 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIVCDGA------------GTVITTNPELVQGIGGRMSGLVSTTP-I--PEVIERIEEKGGIV 141 (258)
T ss_pred HHHHHHHHHhcCCcceEEEEecCC------------CeEEeCCHHHHhhccceeeeeeeccc-h--HHHHHHHHhcCCEE
Confidence 479999999999 67655443211 12234455555555555444434332 2 22333334556788
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh--cccCeEEEe
Q 017770 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLK 189 (366)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE--~G~DGVvl~ 189 (366)
++..+-+|=|++-+.-|+...-.+|...+.++++|+..-+ || .|++-+++.
T Consensus 142 Ld~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRe-le~~~~~~~~if~ 194 (258)
T PF09872_consen 142 LDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRE-LEKEEGVNIYIFG 194 (258)
T ss_pred eCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH-hhccCCCceEEEE
Confidence 8888888999999888877666789889999998887554 44 588877654
No 361
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=23.40 E-value=1.2e+02 Score=25.09 Aligned_cols=54 Identities=30% Similarity=0.467 Sum_probs=37.1
Q ss_pred CCeeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccce
Q 017770 271 RPFRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 271 RPFRVNAGaVH-----aYv~~PggkT~YLSEL~sG~eVLvVd~~-G~tR~a~VGRvKIE~RPL 327 (366)
.-..|+.|++. |-++.| |=+..-.+++.||.|.|++.+ |+ ..-||++..-..-|
T Consensus 31 ~~v~vd~~a~~~l~~Ga~L~~p-GV~~~~~~~~~gd~V~I~~~~~~~--~iavG~a~~~s~e~ 90 (107)
T TIGR00451 31 KIVVVDNGAVKFLKNGADVMRP-GIVDADEDIKEGDDVVVVDENKDR--PLAVGIALMSGEEM 90 (107)
T ss_pred CEEEEChhHHHHHHCCccccCC-eeEeCCCCcCCCCEEEEEECCCCe--EEEEEEEecCHHHH
Confidence 34677777665 333333 334555689999999999886 74 57899998776555
No 362
>PRK06801 hypothetical protein; Provisional
Probab=23.37 E-value=2.2e+02 Score=28.23 Aligned_cols=130 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEc------Ccchhhhhhccceeeeeeeee--cCCccccCCCC------eeEEEEEecChhhh
Q 017770 58 ESKQVMTAAVERGWNTFVFL------SENQQLAIDWSTIALLDPLFI--KEGEVYDSGDR------RVGSIIEVSTPQEL 123 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~------~~~~~~~~~l~~i~~i~~l~~--~~g~~~~~~gk------~v~~~~~v~~~ed~ 123 (366)
.+.+.+..|++.|++.|+++ .++.+..+++..++.-.-+.+ +=|.+-..++. ....+ ++||+.
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~---T~pe~a 161 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKF---TDPQLA 161 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccC---CCHHHH
Q ss_pred hhhccccCCCCeEEE-------eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 124 QQLQPADGQAENIVI-------DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 124 e~~~~~~~~~~~vvv-------~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.++... ...|++-+ ....-..+.+|-|-.--...+.-|+..=.|----..+..+.+.|+++|=+.++
T Consensus 162 ~~f~~~-tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~ 235 (286)
T PRK06801 162 RDFVDR-TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTG 235 (286)
T ss_pred HHHHHH-HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhH
No 363
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=23.35 E-value=3e+02 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=29.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..++..... .+......+++.|++|.+.+|.+..++.+.-
T Consensus 78 ~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 117 (210)
T PRK09935 78 VKVLFLSSK-SECFYAGRAIQAGANGFVSKCNDQNDIFHAV 117 (210)
T ss_pred CcEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 445544443 5556667899999999999999988776543
No 364
>PRK10403 transcriptional regulator NarP; Provisional
Probab=23.27 E-value=3.1e+02 Score=22.84 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=26.4
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
.++..... .+.......++.|++|++.+|.+..++.+.
T Consensus 82 ~ii~l~~~-~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~ 119 (215)
T PRK10403 82 QIIILTVS-DASSDVFALIDAGADGYLLKDSDPEVLLEA 119 (215)
T ss_pred eEEEEeCC-CChHHHHHHHHcCCCeEEecCCCHHHHHHH
Confidence 44444322 444556677999999999999988776544
No 365
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.22 E-value=98 Score=30.99 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=29.5
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHHH
Q 017770 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVLA 198 (366)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev~~ 198 (366)
++.|+... .-..-+-|.+.+++||. .++|.|+|||++.+ +||.+..+
T Consensus 181 l~~i~e~~-~vpVivdAGIgt~sDa~---~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 181 LQIIIENA-KIPVIIDAGIGTPSEAS---QAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred HHHHHHcC-CCcEEEeCCcCCHHHHH---HHHHcCCCEEeecceeecCCCHHHHHH
Confidence 34555532 12223446677888876 46789999998865 68855433
No 366
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=23.22 E-value=2.5e+02 Score=26.71 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=36.7
Q ss_pred eeeehhhhhhc-------ccC-CCceEEEE-----c--CCHHHH-HHHHHHhhcccCeEEEecC-CHHHHHHHHHh
Q 017770 144 QVIPAENIVAS-------FQG-SGKTVFAI-----S--KTPSEA-QIFLEALEQGLGGIVLKVE-DVKAVLALKEY 202 (366)
Q Consensus 144 ~iIPlENliA~-------~q~-~~~~l~a~-----v--~~~~eA-~~al~~LE~G~DGVvl~~~-d~~ev~~l~~~ 202 (366)
..+|.|..++. .++ .+.-|+|. + ...+|| +.+-...|.|+|+|.+.+- |+++++++.+.
T Consensus 119 ~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~ 194 (243)
T cd00377 119 VLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA 194 (243)
T ss_pred eecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc
Confidence 45666655432 222 24455665 4 456665 4566678999999999765 67777665543
No 367
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.15 E-value=77 Score=30.33 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=22.9
Q ss_pred eeEEEecCC--ceeeee--eccCCCeEEEEc---CCCCeeE
Q 017770 281 HAYVLVPGG--KTCYLS--ELKSGKEVIVVD---QKGRQRT 314 (366)
Q Consensus 281 HaYv~~Pgg--kT~YLS--EL~sG~eVLvVd---~~G~tR~ 314 (366)
+.|+....| .|.||+ .+..|++||+|| ..|.|-.
T Consensus 153 ~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~ 193 (238)
T PRK08558 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQR 193 (238)
T ss_pred EEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHH
Confidence 346543333 367776 688999999999 5666533
No 368
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.03 E-value=1.1e+02 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=32.4
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~e 195 (366)
+|..+. ..+++.++..+-++++ .+++.++++ ..++.|+|||+ +|.|+.
T Consensus 193 ~~~~~~-~~~v~~~~~~g~~v~~WTvn~~~~~~---~l~~~GVdgIi--TD~p~~ 241 (249)
T PRK09454 193 NHKLLD-EARVAALKAAGLRILVYTVNDPARAR---ELLRWGVDCIC--TDRIDL 241 (249)
T ss_pred ccccCC-HHHHHHHHHCCCEEEEEeCCCHHHHH---HHHHcCCCEEE--eCChHh
Confidence 344443 4677777777777664 567788776 45778999977 555653
No 369
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=22.92 E-value=65 Score=33.32 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=40.4
Q ss_pred CCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEEe
Q 017770 268 IASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKA 334 (366)
Q Consensus 268 va~RPFRVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe~ 334 (366)
+|+-|||.- -.-||-...|.=-|++||.|+|-..-|+. -.|=..|||+.|=.-+
T Consensus 232 IAtPPp~~~-------~~PpG~mSSyi~sLKpGDKvtisGPfGEf------FaKdtdaemvFigGGA 285 (410)
T COG2871 232 IATPPPRNP-------DAPPGQMSSYIWSLKPGDKVTISGPFGEF------FAKDTDAEMVFIGGGA 285 (410)
T ss_pred eccCCCCCC-------CCCccceeeeEEeecCCCeEEEeccchhh------hhccCCCceEEEecCc
Confidence 344577763 12366677777789999999999999987 5687889999885443
No 370
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=22.81 E-value=2.9e+02 Score=20.85 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.4
Q ss_pred ceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeee--ccCCCeEEEE
Q 017770 244 EGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSE--LKSGKEVIVV 306 (366)
Q Consensus 244 EGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~PggkT~YLSE--L~sG~eVLvV 306 (366)
+|..+-+++.++|+|..|. . .-|..-+-|+.+ +.. +..||.|++-
T Consensus 4 ~G~Vi~~~~g~~~~V~~~~--g---------------~~~~c~~rGklr-~~~~~~~vGD~V~~~ 50 (64)
T cd04451 4 EGVVTEALPNAMFRVELEN--G---------------HEVLAHISGKMR-MNYIRILPGDRVKVE 50 (64)
T ss_pred EEEEEEEeCCCEEEEEeCC--C---------------CEEEEEECceee-cCCcccCCCCEEEEE
Confidence 5888888877888886542 1 123333556655 333 7899999887
No 371
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=22.81 E-value=60 Score=32.33 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=36.8
Q ss_pred eeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCC
Q 017770 95 PLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS 158 (366)
Q Consensus 95 ~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~ 158 (366)
|+|.-+.-.++.+++++ +.+. ++||++......++...=+-...+=+++|||+||..++.+
T Consensus 181 PlF~~~~Lti~~~n~~~---iP~FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~~~ 242 (270)
T TIGR00995 181 PVFQSGLLVVQKKNERY---CPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMETS 242 (270)
T ss_pred cEEeecceEEEeCCeEE---EeeEeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHhcc
Confidence 45554333444555543 3333 8899887555444433322224456899999999998874
No 372
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.78 E-value=1.2e+02 Score=24.75 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=31.4
Q ss_pred EEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017770 256 FLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (366)
Q Consensus 256 FLVhsEt~es~Yva~RPFRVNAGaVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE 323 (366)
+..|+.+..+|.+..+. -+.|+.+-- .+.-=--|+.||.|.+.+..|+.+ .+|++-
T Consensus 11 ~~~~s~~~~~~~l~~~~-------~~~~v~i~p-~dA~~~gi~~Gd~V~v~s~~G~i~----~~v~v~ 66 (123)
T cd02778 11 VHTHGHTANNPLLHELT-------PENTLWINP-ETAARLGIKDGDRVEVSSARGKVT----GKARLT 66 (123)
T ss_pred eecCCccccCHHHHhcC-------CCCeEEECH-HHHHHcCCCCCCEEEEEeCCCcEE----EEEEEc
Confidence 34566665555433332 234555521 111222478899999999999643 456653
No 373
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.76 E-value=2.9e+02 Score=26.79 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEE
Q 017770 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVL 188 (366)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl 188 (366)
+..+..+.+.++++.+... ..+.+=|-..|=+.+||=.-+|+. +.+.=|=+...+.+|.+.+++++ +.|.+-++|
T Consensus 70 i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n~~lL~~~A~t-gkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 70 IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTNLPLLEYIAKT-GKPVILSTGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp -EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-HHHHHHHHTT--S-EEEE-TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CEEEECCCCHHHHHHHHHc--CCCEEEeccccccCHHHHHHHHHh-CCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4467778888888887543 467788878899999999999973 33333445678999999999999 888888776
No 374
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=22.67 E-value=1.9e+02 Score=24.52 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=22.4
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017770 290 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (366)
Q Consensus 290 kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvK 321 (366)
--..|.+|+.||+|.+.+.++ ..+=.|=+++
T Consensus 58 ~F~~L~~l~~Gd~v~v~~~~~-~~~Y~V~~~~ 88 (126)
T cd06166 58 IFNRLDEVEKGDEIKVTTKNG-TYKYKITSIF 88 (126)
T ss_pred ccCChHHCCCCCEEEEEECCE-EEEEEEEEEE
Confidence 346799999999999999844 5555444433
No 375
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=22.67 E-value=5e+02 Score=22.68 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=39.1
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...+.++++..-+..-.+ .++..+.. ....++..... .+......+++.|+|+++.+|-+..++.+.
T Consensus 48 ~~~dlvild~~l~~~~g~-~~~~~lr~~~~~~pii~ls~~-~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~ 116 (239)
T PRK09468 48 ESFHLMVLDLMLPGEDGL-SICRRLRSQNNPTPIIMLTAK-GEEVDRIVGLEIGADDYLPKPFNPRELLAR 116 (239)
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEECC-CcHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 346777775443322111 22333322 23456655543 334455678999999999999998876553
No 376
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.60 E-value=6.8e+02 Score=23.89 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE----
Q 017770 63 MTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI---- 138 (366)
Q Consensus 63 vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv---- 138 (366)
+..|++.|+|++=+..+|......-.-+ +.++.+|.-+. +.|+.+++.... .||+.+
T Consensus 74 ~dlA~~~~AdGVHlGq~D~~~~~ar~~~---------------~~~~iIG~S~h--~~eea~~A~~~g--~DYv~~Gpif 134 (211)
T COG0352 74 VDLALAVGADGVHLGQDDMPLAEARELL---------------GPGLIIGLSTH--DLEEALEAEELG--ADYVGLGPIF 134 (211)
T ss_pred HHHHHhCCCCEEEcCCcccchHHHHHhc---------------CCCCEEEeecC--CHHHHHHHHhcC--CCEEEECCcC
Q ss_pred ---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE------ecCCHHHHHHHHHhh
Q 017770 139 ---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL------KVEDVKAVLALKEYF 203 (366)
Q Consensus 139 ---~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl------~~~d~~ev~~l~~~~ 203 (366)
.-.|-..+=+|-+-...+...--++|.-.- ..+-+-++++.|+|||-+ ..+....++++++.+
T Consensus 135 pT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi--~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~ 206 (211)
T COG0352 135 PTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI--NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNAL 206 (211)
T ss_pred CCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC--CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHH
No 377
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=22.51 E-value=1.2e+02 Score=25.88 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017770 291 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (366)
Q Consensus 291 T~YLSEL~sG~eVLvVd~~G~tR~a~VGRvK 321 (366)
-..|.+|+.||+|.+.+. |+...=-|-+++
T Consensus 56 F~~L~~l~~Gd~i~v~~~-~~~~~Y~V~~~~ 85 (127)
T cd05828 56 FRFLGELEPGDIITLQTL-GGTYTYRVTSTR 85 (127)
T ss_pred hhChhcCCCCCEEEEEEC-CEEEEEEEeeEE
Confidence 457899999999999998 666665555554
No 378
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.50 E-value=3.6e+02 Score=23.02 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=46.3
Q ss_pred eeehhhhhhcccCCCceEEEEcCCH----HHHHHHHHHhhc-c-cCeEEEecCCHHHHHHHHHhh
Q 017770 145 VIPAENIVASFQGSGKTVFAISKTP----SEAQIFLEALEQ-G-LGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 145 iIPlENliA~~q~~~~~l~a~v~~~----~eA~~al~~LE~-G-~DGVvl~~~d~~ev~~l~~~~ 203 (366)
+..|+.++..+.+ +..++-..++. +-++..+..+++ | .+-|++.+-++..++.+++..
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~ 111 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELD 111 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhC
Confidence 8889999999877 67899999997 345556666655 3 799999999999888877754
No 379
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=22.45 E-value=1.4e+02 Score=25.24 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..++.... ..+......+++.|++|.+.+|-++.++.+.
T Consensus 77 ~~ii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 115 (226)
T TIGR02154 77 IPIIMLTA-RGEEEDRVRGLETGADDYITKPFSPRELLAR 115 (226)
T ss_pred CCEEEEec-CCCHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 44555443 3445667789999999999999998876543
No 380
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.42 E-value=1.5e+02 Score=24.07 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCcEEEEE-eCchhHHHHHHHhCCcEEEEcCcc------hhhhhhcc
Q 017770 49 KPKRVWIW-TESKQVMTAAVERGWNTFVFLSEN------QQLAIDWS 88 (366)
Q Consensus 49 ~~K~vWiw-~~~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~ 88 (366)
++..+||= -++.+++..|+++|+.++|+..+. .+++++.+
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~ 85 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKELG 85 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCC
Confidence 34789998 578999999999999999988542 34555554
No 381
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=22.29 E-value=77 Score=34.10 Aligned_cols=59 Identities=29% Similarity=0.460 Sum_probs=38.6
Q ss_pred CCCCCeeeec------CCceeEEEe----------cCCceeeeee-ccCCCeEEEEcCC-CCeeEEeeeeEEEeccceEE
Q 017770 268 IASRPFRVNA------GPVHAYVLV----------PGGKTCYLSE-LKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLIL 329 (366)
Q Consensus 268 va~RPFRVNA------GaVHaYv~~----------PggkT~YLSE-L~sG~eVLvVd~~-G~tR~a~VGRvKIE~RPLlL 329 (366)
..+|||-+-. +-+|=.|.+ .|.-|.||++ |+.||+|-+.-.. |.-+.- .-..+|+++
T Consensus 381 ~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp-----~~~~~piIm 455 (597)
T TIGR01931 381 LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDNFRLP-----EDPDTPIIM 455 (597)
T ss_pred cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCcccCC-----CCCCCCEEE
Confidence 3578888743 346665553 3777899998 9999999886433 333210 112579998
Q ss_pred EE
Q 017770 330 VE 331 (366)
Q Consensus 330 Ie 331 (366)
|=
T Consensus 456 Ig 457 (597)
T TIGR01931 456 IG 457 (597)
T ss_pred Ec
Confidence 84
No 382
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=22.27 E-value=59 Score=31.08 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=31.4
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 277 AGaVHaYv~~PggkT---~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
+|+...--..|++.. .+|.+.+.|| |+++|..|..+.+..|-.
T Consensus 50 ~G~A~TV~~~~~d~~~~~~ai~~~~pGd-VlVid~~g~~~~a~~G~~ 95 (222)
T TIGR02798 50 CGTAVTVLLQPGDNWMMHVAAEQIQEGD-VVVAACTAECEDGYFGDL 95 (222)
T ss_pred EEEEEEEEeecCCchHHHHHHHhCCCCe-EEEEECCCCcceEeehHH
Confidence 566655555555543 5788888876 788999999999988853
No 383
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.27 E-value=1.2e+02 Score=26.86 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=27.8
Q ss_pred HHHHHHHhhcccCeEEEecC-CHHHHHHHHHhhcc
Q 017770 172 AQIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 205 (366)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~-d~~ev~~l~~~~~~ 205 (366)
-+.+.-.||||+==|.-+|+ +++++.+|+++++.
T Consensus 40 ~e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 40 PERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred hHHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 34566779999988888998 88999999998854
No 384
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=22.13 E-value=95 Score=32.80 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=47.7
Q ss_pred eEEEEEecChhhhhhhcccc-CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeE
Q 017770 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~-~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~-v~~~~eA~~al~~LE~G~DGV 186 (366)
++..+.+. ++..+.+..+. ...+.++++..+-.-....++|+++... +.-|++- +.+.++| ....+.|+|+|
T Consensus 216 Vgaav~~~-~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~---~~l~~~G~d~i 291 (475)
T TIGR01303 216 IGAAVGIN-GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGV---RDLLEAGANII 291 (475)
T ss_pred ehheeeeC-ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHH---HHHHHhCCCEE
Confidence 34444442 34445544444 3589999999876668888999988765 3455554 5555555 45557899999
Q ss_pred E
Q 017770 187 V 187 (366)
Q Consensus 187 v 187 (366)
-
T Consensus 292 ~ 292 (475)
T TIGR01303 292 K 292 (475)
T ss_pred E
Confidence 7
No 385
>PRK06354 pyruvate kinase; Provisional
Probab=22.06 E-value=1.3e+02 Score=32.91 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCCCeEEEeCC-CC-eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 131 GQAENIVIDLP-DW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 131 ~~~~~vvv~~~-DW-~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
...|++-+.|- +- .|+-+-+++.+..+.+..+++...+.+--+-+-++++. +|||++.+.|.+
T Consensus 190 ~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 254 (590)
T PRK06354 190 QGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGLMVARGDLG 254 (590)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEEccchhh
Confidence 56899999874 22 25566677754345678899999999999999999999 999999999853
No 386
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=22.06 E-value=1.1e+02 Score=29.11 Aligned_cols=30 Identities=3% Similarity=0.076 Sum_probs=24.7
Q ss_pred CCCcEEEEEe---CchhHHHHHHHhCCcEEEEc
Q 017770 48 SKPKRVWIWT---ESKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~---~~K~~vT~ALEsG~~~~vv~ 77 (366)
.....+.+|| .+++.|...++.|+|+|+.+
T Consensus 248 ~~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiTD 280 (282)
T cd08605 248 ASGLELGTYGKLNNDAEAVERQADLGVDGVIVD 280 (282)
T ss_pred HcCcEEEEeCCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3566799998 46899999999999999864
No 387
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=22.00 E-value=1.3e+02 Score=30.85 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCeEEEeC-----------CCCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 131 GQAENIVIDL-----------PDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 131 ~~~~~vvv~~-----------~DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..++.+++.. .||. +|....+..+..|++ .+.+.++|+. .++.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~-----~l~~~i~~~~IPVI~G~V~t~e~A~~---~~~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPL-----NLKEFIGELDVPVIAGGVNDYTTALH---LMRTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHH-----HHHHHHHHCCCCEEEeCCCCHHHHHH---HHHcCCCEEEEC
Confidence 4578888863 2443 444433444567776 5666666654 456899999844
No 388
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=21.96 E-value=2.9e+02 Score=22.65 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=27.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
.++... ...+......+++.|+++++.+|.+..++.+.-
T Consensus 79 ~ii~ls-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 117 (211)
T PRK15369 79 NILVLT-ARQEEHMASRTLAAGALGYVLKKSPQQILLAAI 117 (211)
T ss_pred cEEEEe-CCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHH
Confidence 444443 344555667889999999999999887765543
No 389
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.88 E-value=57 Score=32.26 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=27.2
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 017770 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (366)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev 196 (366)
++.|+.++ +-..-+=|...+++||. .++|.|+|||++.+ .||-..
T Consensus 167 l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNTAiA~A~dPv~M 216 (247)
T PF05690_consen 167 LRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNTAIAKAKDPVAM 216 (247)
T ss_dssp HHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESHHHHTSSSHHHH
T ss_pred HHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhhHHhccCCHHHH
Confidence 55566665 33344456677888875 57899999999976 466443
No 390
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=21.64 E-value=1.5e+02 Score=30.25 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+++.+. +.++++++..+-+|.+ .|+++++++.++ +.|||||+ ||.|+.+.++-.
T Consensus 207 ~~~~lt-~~~v~~~~~~Gl~V~vWTVN~~~~~~~l~---~~GVdgIi--TD~P~~l~~l~~ 261 (351)
T cd08608 207 RYTQAS-AQEIRDYSASNLSVNLYTVNEPWLYSLLW---CSGVPSVT--SDASHVLRKVPF 261 (351)
T ss_pred chhhcC-HHHHHHHHHCCCEEEEEecCCHHHHHHHH---HCCCCEEE--ECCHHHHHHhhh
Confidence 344444 4567777666655544 577777776554 67999987 888987776544
No 391
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.54 E-value=6.8e+02 Score=23.52 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC-----eeee-hhhhhhcccCCCceEEE
Q 017770 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-----QVIP-AENIVASFQGSGKTVFA 164 (366)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW-----~iIP-lENliA~~q~~~~~l~a 164 (366)
.|..|.+.+|..+.. +|+. ..+-...+|.++-+.... ..++.+.+-..|= ..++ ++.|.... .-+-.+=.
T Consensus 6 iIP~idl~~G~~V~~~~g~~-~~~~~~~dp~~~a~~~~~-~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~-~~pv~vgG 82 (241)
T PRK14024 6 LLPAVDVVDGQAVRLVQGEA-GSETSYGSPLDAALAWQR-DGAEWIHLVDLDAAFGRGSNRELLAEVVGKL-DVKVELSG 82 (241)
T ss_pred EEEEEEeECCEEEEeecccc-cCceECCCHHHHHHHHHH-CCCCEEEEEeccccCCCCccHHHHHHHHHHc-CCCEEEcC
Confidence 455577788876643 3431 122234477776655444 3455555534331 1111 22333332 22345667
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~ 201 (366)
.++|.|+++.+|. .|+|-+++-+. ||+-++++.+
T Consensus 83 Girs~edv~~~l~---~Ga~kvviGs~~l~~p~l~~~i~~ 119 (241)
T PRK14024 83 GIRDDESLEAALA---TGCARVNIGTAALENPEWCARVIA 119 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchHhCCHHHHHHHHH
Confidence 8999999998865 69999999885 6666655543
No 392
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.17 E-value=2e+02 Score=27.86 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=36.3
Q ss_pred ChhhhhhhccccC---CCCeEEEeCC-CC-eeeehhhhhhcccC-CCc-eEE--EEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 119 TPQELQQLQPADG---QAENIVIDLP-DW-QVIPAENIVASFQG-SGK-TVF--AISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 119 ~~ed~e~~~~~~~---~~~~vvv~~~-DW-~iIPlENliA~~q~-~~~-~l~--a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
+++++...+.+.+ ..+.+.++.. .. .-++.| +|+++.. .+. .|+ ..+++.++|+ ++++.|+|||++-
T Consensus 138 ~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e-~I~~v~~~~~~~pvivGGGIrs~e~a~---~~l~~GAD~VVVG 213 (232)
T PRK04169 138 DKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPE-MVKAVKKALDITPLIYGGGIRSPEQAR---ELMAAGADTIVVG 213 (232)
T ss_pred ChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHH-HHHHHHHhcCCCcEEEECCCCCHHHHH---HHHHhCCCEEEEC
Confidence 4555554443332 2456666543 22 223333 3433332 222 333 3467777776 4567899999997
Q ss_pred cC
Q 017770 190 VE 191 (366)
Q Consensus 190 ~~ 191 (366)
+-
T Consensus 214 Sa 215 (232)
T PRK04169 214 NI 215 (232)
T ss_pred hH
Confidence 73
No 393
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=21.08 E-value=5.5e+02 Score=22.20 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=39.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-...=.+ .++..++. ....++.... ..+......+++.|+++.+.+|-+..++.+.
T Consensus 46 ~~dlvild~~l~~~~g~-~~~~~l~~~~~~~~~pvi~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 115 (229)
T PRK10161 46 WPDLILLDWMLPGGSGI-QFIKHLKRESMTRDIPVVMLTA-RGEEEDRVRGLETGADDYITKPFSPKELVAR 115 (229)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhccccCCCCEEEEEC-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 46777775432222112 22233322 2334555443 3456677889999999999999998876543
No 394
>PRK15447 putative protease; Provisional
Probab=20.88 E-value=2.5e+02 Score=27.60 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCCeEEEeCCC------CeeeehhhhhhcccCCCceEEEEcCC----HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 132 QAENIVIDLPD------WQVIPAENIVASFQGSGKTVFAISKT----PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 132 ~~~~vvv~~~D------W~iIPlENliA~~q~~~~~l~a~v~~----~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
.+|-|.+.... |+.=-+...+..++..+.+|+..... .+|-+.+...++.|.|+|++ .|++.+.-+++
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v--~d~g~l~~~~e 105 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA--NDLGAVRLLAE 105 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE--eCHHHHHHHHh
Confidence 47777774332 66666777788777777788776644 45777888899999998774 67887766665
No 395
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=20.64 E-value=1.4e+02 Score=26.96 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 278 GPVHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 278 GaVHaYv~~-P-ggkT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|-+.=.|.. + |.-|+||.+ |+.||+|.+...-|..-.- - -..+|+++|=+-
T Consensus 53 ~~~~~~vk~~~~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~----~-~~~~~illIagG 106 (232)
T cd06190 53 GEWEFIIKRKPGGAASNALFDNLEPGDELELDGPYGLAYLR----P-DEDRDIVCIAGG 106 (232)
T ss_pred CEEEEEEEEcCCCcchHHHhhcCCCCCEEEEECCcccceec----C-CCCCcEEEEeeC
Confidence 434444443 4 446999976 7999999999888876321 0 125788887543
No 396
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.61 E-value=1.4e+02 Score=31.78 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 131 ~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
...|++-+.|- -=.|+-+-++++.. +.+..+++...+.+--+-+=++++. +|||++.+.|.+
T Consensus 186 ~~vD~ia~SFV~~~~di~~~r~~l~~~-~~~~~iiakIEt~~av~nldeI~~~-~DgImIargDLg 249 (480)
T cd00288 186 QGVDMIFASFVRKASDVLEIREVLGEK-GKDIKIIAKIENQEGVNNFDEILEA-SDGIMVARGDLG 249 (480)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHHHh-cCEEEECcchhh
Confidence 35899999874 34477788888774 5677899999999999999999999 999999999854
No 397
>PRK04046 translation initiation factor IF-6; Provisional
Probab=20.59 E-value=5e+02 Score=24.86 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc----cc----------
Q 017770 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ----GL---------- 183 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~----G~---------- 183 (366)
.+.++++.+...+ ..+...+ .. +.-=+=|+++. +.++-|+..--+.+|.+..-++|.. |.
T Consensus 74 ~~~~e~~~l~e~L-~v~V~~~--~~-~~~~vGn~i~~--N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ 147 (222)
T PRK04046 74 VLDEELELLKEAL-DLNVEVL--PS-KLTALGNLILA--NDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSA 147 (222)
T ss_pred CCHHHHHHHHHhc-CceEEEE--ec-cccceEeEEEE--cCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeE
Confidence 4556556665544 3333333 23 44444577765 6677787777777888877666532 22
Q ss_pred -----CeEEEecCC-HHHHHHHHHhhcccccccceeeeeEEEE-EEEEEcCCcceEEEeecCCCCCCceEEEeccC
Q 017770 184 -----GGIVLKVED-VKAVLALKEYFDGRNEVSNLLSLMKATV-TRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFA 252 (366)
Q Consensus 184 -----DGVvl~~~d-~~ev~~l~~~~~~~~~~~~~l~L~~atV-t~V~~vGmGDRVCVDtcSll~~GEGmLVGS~S 252 (366)
.|.+++|+- ..+++.+++++ +++....|| -.+.-||+|--+ -..|+|||...
T Consensus 148 ivaNd~G~lv~p~~t~~ei~~i~~~l--------~v~~~~gTvn~G~~~VGs~~va---------n~~G~lvg~~t 206 (222)
T PRK04046 148 GVVTNKGGLVHPDATDEELKFLEDLF--------KVEVDIGTVNFGSPLVGSGLVA---------NSKGAVVGSDT 206 (222)
T ss_pred EEEeCCEEEECCCCCHHHHHHHHHHh--------CCceEEeEEcCCCCceeEEEEE---------eCCEEEECCCC
Confidence 367788864 56888888888 588899999 888888887433 24566555543
No 398
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.50 E-value=1.6e+02 Score=24.30 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=18.2
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017770 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (366)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~a~VGRvKIE 323 (366)
-++.||.|.+.+..|+. ..++++-
T Consensus 43 gi~~Gd~V~v~s~~g~i----~~~a~~~ 66 (121)
T cd02794 43 GIKDGDRVLVFNDRGKV----IRPVKVT 66 (121)
T ss_pred CCCCCCEEEEEcCCceE----EEEEEEC
Confidence 46789999999999954 3466664
No 399
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=20.42 E-value=1e+02 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCcEEEEEe-Cch--hHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESK--QVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K--~~vT~ALEsG~~~~vv~~ 78 (366)
++.+.+.+|+ .+. +.+..+++.|+|+|+.+.
T Consensus 220 ~~g~~v~~wtvn~~~~~~~~~l~~~gvdgIiTD~ 253 (256)
T PF03009_consen 220 KAGLKVYVWTVNDPDVEDMKRLLDLGVDGIITDF 253 (256)
T ss_dssp HTT-EEEEBSB-SHSHHHHHHHHHHT-SEEEES-
T ss_pred HCCCEEEEEecCCcHHHHHHHHHhCCCCEEEEcC
Confidence 5668899999 456 799999999999999764
No 400
>PRK13435 response regulator; Provisional
Probab=20.34 E-value=4.7e+02 Score=21.16 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 132 QAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 132 ~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..+.+|++.. +..-+.+-..+.. .....++....+.+. ...++.|+++.+.+|-+..++.+.-
T Consensus 50 ~~dliivd~~~~~~~~~~~~~~~l~~--~~~~pii~ls~~~~~----~~~~~~ga~~~l~kp~~~~~l~~~i 115 (145)
T PRK13435 50 QPDVALVDVHLADGPTGVEVARRLSA--DGGVEVVFMTGNPER----VPHDFAGALGVIAKPYSPRGVARAL 115 (145)
T ss_pred CCCEEEEeeecCCCCcHHHHHHHHHh--CCCCCEEEEeCCHHH----HHHHhcCcceeEeCCCCHHHHHHHH
Confidence 4567777432 2323332222322 124456666555432 3567789999999999988776643
No 401
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=20.28 E-value=95 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=24.7
Q ss_pred CCCcEEEEEe-Cc---------hhHHHHHHHh-CCcEEEEc
Q 017770 48 SKPKRVWIWT-ES---------KQVMTAAVER-GWNTFVFL 77 (366)
Q Consensus 48 ~~~K~vWiw~-~~---------K~~vT~ALEs-G~~~~vv~ 77 (366)
...++|++|| .+ .+.+...++. |+|+|+.+
T Consensus 254 ~~Gl~v~~WTvn~~~~~~~~~~~~~~~~l~~~~GVdgIiTD 294 (296)
T cd08559 254 KAGLLVHPYTFRNENLFLAPDFKQDMDALYNAAGVDGVFTD 294 (296)
T ss_pred HcCCEEEEEEecCcccccccccccCHHHHHHHhCCCEEEcC
Confidence 3567899999 45 7889999998 99999864
No 402
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.28 E-value=5.2e+02 Score=22.98 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=22.3
Q ss_pred chhHHHHH-HHhCCcEEEEcCcchhhhhhccceeeee
Q 017770 59 SKQVMTAA-VERGWNTFVFLSENQQLAIDWSTIALLD 94 (366)
Q Consensus 59 ~K~~vT~A-LEsG~~~~vv~~~~~~~~~~l~~i~~i~ 94 (366)
-.+.+... .+.|+|-||-...+.++.++.-++.++.
T Consensus 22 ~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~ 58 (176)
T PF06506_consen 22 AVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVE 58 (176)
T ss_dssp HHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEE
T ss_pred HHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEE
Confidence 45566666 6789998887776666666655554433
No 403
>PRK11173 two-component response regulator; Provisional
Probab=20.25 E-value=5.9e+02 Score=22.36 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=29.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH-HHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA-LKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~-l~~~~ 203 (366)
..++......+ .......++.|+|+.+.+|-++.++.. ++.++
T Consensus 75 ~pii~lt~~~~-~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l 118 (237)
T PRK11173 75 VALMFLTGRDN-EVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (237)
T ss_pred CCEEEEECCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 34555544433 344567899999999999999988753 34444
No 404
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=20.08 E-value=1.2e+02 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=29.1
Q ss_pred CeeeehhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 143 WQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 143 W~iIPlENliA~~q~~-~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
++.+- +.+|++++.. +-+|.+ .|++.++++ ..++.|||||+ ||.|+
T Consensus 214 ~~l~t-~~~V~~~h~~~gl~V~~WTVN~~~~~~---~l~~~GVDgIi--TD~P~ 261 (263)
T cd08580 214 ATLWT-PAAVDCFRRNSKVKIVLFGINTADDYR---LAKCLGADAVM--VDSPA 261 (263)
T ss_pred cccCC-HHHHHHHHhcCCcEEEEEEeCCHHHHH---HHHHcCCCEEE--eCCcc
Confidence 34443 3467777665 555544 467777766 56788999999 55443
No 405
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=20.01 E-value=89 Score=27.05 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=17.2
Q ss_pred chhHHHHHHHhCCcEEEEc
Q 017770 59 SKQVMTAAVERGWNTFVFL 77 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~ 77 (366)
+...+..|++.|+|+|++-
T Consensus 41 ~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 41 DPEFILRAFEKGADGVLVA 59 (124)
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 5889999999999999994
Done!