Query 017770
Match_columns 366
No_of_seqs 130 out of 165
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1at0_A 17-hedgehog; developmen 95.3 0.042 1.4E-06 46.7 7.2 53 281-333 5-61 (145)
2 3qz6_A HPCH/HPAI aldolase; str 93.0 0.18 6E-06 46.8 6.6 91 109-203 15-110 (261)
3 3qja_A IGPS, indole-3-glycerol 92.9 0.74 2.5E-05 43.0 10.8 117 59-195 124-253 (272)
4 2in0_A Endonuclease PI-MTUI; h 91.3 0.31 1.1E-05 40.2 5.5 49 285-333 10-62 (139)
5 2v5j_A 2,4-dihydroxyhept-2-ENE 90.9 1.2 4.2E-05 41.8 9.9 93 107-203 36-133 (287)
6 1dxe_A 2-dehydro-3-deoxy-galac 89.9 1.7 5.7E-05 39.8 9.6 89 110-204 20-114 (256)
7 1mi8_A DNAB intein; all beta-s 89.8 0.73 2.5E-05 38.7 6.7 52 282-333 8-64 (158)
8 2vws_A YFAU, 2-keto-3-deoxy su 89.4 1.3 4.5E-05 40.8 8.6 92 108-203 16-112 (267)
9 3q58_A N-acetylmannosamine-6-p 89.4 1.7 5.8E-05 39.4 9.2 107 60-190 91-211 (229)
10 1am2_A MXE GYRA intein; protei 89.0 0.73 2.5E-05 40.8 6.4 51 282-333 7-65 (199)
11 2v82_A 2-dehydro-3-deoxy-6-pho 89.0 0.8 2.7E-05 39.6 6.5 107 60-191 22-130 (212)
12 3luf_A Two-component system re 88.9 1.5 5.1E-05 39.0 8.3 143 53-203 77-243 (259)
13 3q58_A N-acetylmannosamine-6-p 86.2 8.1 0.00028 34.9 11.7 113 60-188 39-155 (229)
14 3qz6_A HPCH/HPAI aldolase; str 84.9 0.48 1.6E-05 43.8 2.9 143 51-194 17-179 (261)
15 3igs_A N-acetylmannosamine-6-p 84.6 3.6 0.00012 37.3 8.5 107 60-190 91-211 (232)
16 3igs_A N-acetylmannosamine-6-p 84.4 10 0.00035 34.3 11.4 113 60-188 39-155 (232)
17 1dxe_A 2-dehydro-3-deoxy-galac 84.1 5.7 0.00019 36.2 9.6 139 52-194 22-181 (256)
18 1izc_A Macrophomate synthase i 84.0 2.1 7.2E-05 41.4 7.0 91 110-204 43-140 (339)
19 3bo9_A Putative nitroalkan dio 83.5 4.1 0.00014 38.4 8.7 113 56-190 36-152 (326)
20 3paj_A Nicotinate-nucleotide p 83.4 1.6 5.4E-05 42.5 5.9 41 160-203 232-272 (320)
21 3qtg_A Pyruvate kinase, PK; TI 83.0 1.1 3.8E-05 45.5 4.9 135 58-205 182-344 (461)
22 3vnd_A TSA, tryptophan synthas 82.9 1.1 3.8E-05 42.0 4.4 114 60-191 113-237 (267)
23 1wa3_A 2-keto-3-deoxy-6-phosph 81.1 3.1 0.00011 35.6 6.4 121 60-203 25-145 (205)
24 1qop_A Tryptophan synthase alp 81.1 1.6 5.4E-05 40.0 4.7 114 60-191 112-236 (268)
25 1sgj_A Citrate lyase, beta sub 80.4 5.2 0.00018 36.9 8.0 92 109-204 8-116 (284)
26 3usb_A Inosine-5'-monophosphat 80.3 4.5 0.00015 40.8 8.1 115 56-191 254-390 (511)
27 2imz_A Endonuclease PI-MTUI; N 80.2 2.3 7.8E-05 35.8 5.1 57 283-344 7-68 (168)
28 1e0t_A Pyruvate kinase, PK; ph 80.0 1.9 6.4E-05 43.9 5.2 135 58-205 173-334 (470)
29 3hqn_D Pyruvate kinase, PK; TI 80.0 0.99 3.4E-05 46.3 3.2 134 58-204 193-352 (499)
30 3o63_A Probable thiamine-phosp 79.8 10 0.00034 34.8 9.6 89 108-203 135-239 (243)
31 4fxs_A Inosine-5'-monophosphat 79.8 4 0.00014 41.0 7.5 115 56-191 229-365 (496)
32 3tsm_A IGPS, indole-3-glycerol 79.6 12 0.00041 35.2 10.3 122 59-203 131-266 (272)
33 3gr4_A Pyruvate kinase isozyme 79.6 1.6 5.6E-05 45.2 4.8 134 58-204 243-402 (550)
34 2e28_A Pyruvate kinase, PK; al 79.6 1.5 5.2E-05 45.6 4.6 135 58-205 174-335 (587)
35 1umk_A B5R, NADH-cytochrome B5 79.3 4.3 0.00015 36.0 6.8 93 213-313 14-124 (275)
36 4avf_A Inosine-5'-monophosphat 79.2 7.2 0.00025 39.0 9.2 115 56-191 227-363 (490)
37 3tqv_A Nicotinate-nucleotide p 78.8 3.1 0.00011 39.8 6.1 42 159-203 198-239 (287)
38 2ekc_A AQ_1548, tryptophan syn 78.7 1.7 5.9E-05 39.8 4.2 113 60-190 112-235 (262)
39 3nav_A Tryptophan synthase alp 78.6 2 7E-05 40.3 4.7 114 60-191 115-239 (271)
40 3lab_A Putative KDPG (2-keto-3 78.2 10 0.00035 34.8 9.1 122 58-203 26-157 (217)
41 4drs_A Pyruvate kinase; glycol 78.1 3.1 0.00011 42.9 6.3 138 61-204 220-383 (526)
42 3l0g_A Nicotinate-nucleotide p 78.1 3.3 0.00011 40.0 6.1 42 159-203 207-248 (300)
43 1wbh_A KHG/KDPG aldolase; lyas 78.0 7.5 0.00026 34.8 8.0 109 60-192 31-139 (214)
44 4e7p_A Response regulator; DNA 77.5 20 0.00069 27.8 9.5 81 116-199 51-133 (150)
45 2v5j_A 2,4-dihydroxyhept-2-ENE 77.3 7 0.00024 36.6 7.9 36 159-194 166-202 (287)
46 1vhc_A Putative KHG/KDPG aldol 77.3 7.2 0.00025 35.3 7.8 110 59-192 31-140 (224)
47 2vws_A YFAU, 2-keto-3-deoxy su 77.0 9.1 0.00031 35.2 8.5 36 159-194 145-181 (267)
48 3ffs_A Inosine-5-monophosphate 77.0 6.7 0.00023 38.8 8.1 109 60-191 146-277 (400)
49 1a3w_A Pyruvate kinase; allost 76.8 0.52 1.8E-05 48.2 0.1 135 58-205 194-354 (500)
50 3jte_A Response regulator rece 76.7 14 0.00048 28.2 8.3 82 116-199 32-116 (143)
51 1xi3_A Thiamine phosphate pyro 76.6 8.3 0.00028 32.7 7.6 112 61-203 77-210 (215)
52 3hdg_A Uncharacterized protein 76.6 9 0.00031 29.1 7.1 83 116-201 36-120 (137)
53 2gjl_A Hypothetical protein PA 75.8 6.7 0.00023 36.5 7.4 110 58-190 27-146 (328)
54 4e38_A Keto-hydroxyglutarate-a 75.6 7.3 0.00025 35.9 7.4 108 59-193 48-158 (232)
55 1o4u_A Type II quinolic acid p 75.5 4.8 0.00017 38.2 6.4 42 160-204 194-235 (285)
56 3c2e_A Nicotinate-nucleotide p 75.0 1.9 6.6E-05 40.8 3.5 69 160-234 200-276 (294)
57 3gnn_A Nicotinate-nucleotide p 74.3 3.3 0.00011 39.9 4.9 42 159-203 209-250 (298)
58 2gjl_A Hypothetical protein PA 74.2 13 0.00045 34.5 8.9 107 60-190 86-202 (328)
59 2qvg_A Two component response 74.0 15 0.00052 27.9 7.8 66 132-199 59-128 (143)
60 3gg8_A Pyruvate kinase; malari 73.8 1.7 5.9E-05 44.7 3.0 134 58-204 208-368 (511)
61 1qap_A Quinolinic acid phospho 73.8 4.5 0.00015 38.5 5.7 40 161-203 210-249 (296)
62 1ujp_A Tryptophan synthase alp 73.8 3.7 0.00013 38.2 5.1 114 60-191 109-231 (271)
63 2qzj_A Two-component response 73.7 21 0.00072 27.4 8.7 66 132-199 48-114 (136)
64 2b7n_A Probable nicotinate-nuc 73.2 8.2 0.00028 35.9 7.2 42 160-204 183-224 (273)
65 3khd_A Pyruvate kinase; malari 72.9 1.9 6.7E-05 44.4 3.1 134 58-204 217-377 (520)
66 1izc_A Macrophomate synthase i 72.6 2.7 9.4E-05 40.6 3.9 140 51-194 96-278 (339)
67 4fo4_A Inosine 5'-monophosphat 72.5 11 0.00039 36.6 8.3 115 58-191 108-242 (366)
68 3jqq_A Ferredoxin NADP reducta 72.1 5.1 0.00017 37.1 5.5 59 268-332 98-178 (316)
69 2tps_A Protein (thiamin phosph 71.9 17 0.0006 31.1 8.6 114 62-203 86-220 (227)
70 1w8s_A FBP aldolase, fructose- 71.8 9.2 0.00031 35.2 7.1 82 119-204 157-252 (263)
71 1k68_A Phytochrome response re 71.7 17 0.00059 27.0 7.6 66 132-199 55-124 (140)
72 3t05_A Pyruvate kinase, PK; te 71.6 2 6.9E-05 45.0 3.0 134 58-204 194-353 (606)
73 1xi3_A Thiamine phosphate pyro 71.1 19 0.00065 30.5 8.5 103 59-190 28-136 (215)
74 3q9s_A DNA-binding response re 70.6 14 0.00049 32.1 7.8 81 116-199 66-147 (249)
75 1yad_A Regulatory protein TENI 70.4 29 0.00098 30.0 9.7 52 131-190 87-138 (221)
76 3kcn_A Adenylate cyclase homol 69.4 25 0.00084 27.3 8.2 82 116-199 32-116 (151)
77 3grc_A Sensor protein, kinase; 69.3 27 0.00093 26.4 8.3 81 117-199 36-120 (140)
78 1vd6_A Glycerophosphoryl diest 69.0 28 0.00095 30.5 9.3 59 144-203 77-142 (224)
79 3o63_A Probable thiamine-phosp 68.7 8.9 0.0003 35.2 6.3 103 60-190 46-163 (243)
80 4eh1_A Flavohemoprotein; struc 68.2 8.3 0.00028 33.3 5.7 102 215-332 3-122 (243)
81 3tha_A Tryptophan synthase alp 68.1 5.4 0.00019 37.3 4.8 116 59-191 105-229 (252)
82 3f6c_A Positive transcription 68.0 14 0.00049 27.7 6.4 81 116-199 31-113 (134)
83 1yxy_A Putative N-acetylmannos 68.0 28 0.00096 30.3 9.1 112 60-186 39-157 (234)
84 2jbm_A Nicotinate-nucleotide p 68.0 8.5 0.00029 36.4 6.2 42 160-204 198-239 (299)
85 1rd5_A Tryptophan synthase alp 67.9 4.1 0.00014 36.6 3.8 109 64-190 112-231 (262)
86 2z6i_A Trans-2-enoyl-ACP reduc 67.9 13 0.00046 34.7 7.5 107 60-190 78-192 (332)
87 1qo2_A Molecule: N-((5-phospho 67.8 22 0.00076 31.2 8.5 134 52-190 75-224 (241)
88 2v82_A 2-dehydro-3-deoxy-6-pho 67.8 10 0.00035 32.6 6.2 105 59-190 69-177 (212)
89 3llv_A Exopolyphosphatase-rela 67.8 22 0.00076 27.9 7.7 113 50-191 6-125 (141)
90 1p2f_A Response regulator; DRR 67.7 23 0.0008 29.4 8.2 80 116-200 30-111 (220)
91 3khj_A Inosine-5-monophosphate 67.6 12 0.0004 36.2 7.2 112 60-191 107-238 (361)
92 3bw2_A 2-nitropropane dioxygen 67.1 14 0.00048 35.0 7.5 107 60-190 112-238 (369)
93 3gt7_A Sensor protein; structu 66.6 28 0.00097 27.2 8.1 85 116-203 36-125 (154)
94 3cnb_A DNA-binding response re 66.4 33 0.0011 25.7 8.2 80 117-199 40-123 (143)
95 3hdv_A Response regulator; PSI 65.9 22 0.00074 26.8 7.1 65 133-199 53-120 (136)
96 1zgz_A Torcad operon transcrip 65.9 33 0.0011 25.2 8.0 79 117-198 32-111 (122)
97 1sgj_A Citrate lyase, beta sub 65.8 9.9 0.00034 35.0 6.0 129 50-194 7-157 (284)
98 2w6r_A Imidazole glycerol phos 65.6 31 0.0011 30.5 9.0 69 132-203 169-246 (266)
99 3fwz_A Inner membrane protein 65.6 25 0.00084 28.1 7.7 104 60-191 20-127 (140)
100 3h1g_A Chemotaxis protein CHEY 64.6 26 0.00089 26.4 7.3 40 159-199 81-120 (129)
101 1at0_A 17-hedgehog; developmen 64.2 14 0.00047 31.1 6.1 34 290-323 85-119 (145)
102 1geq_A Tryptophan synthase alp 64.2 6.7 0.00023 34.5 4.4 113 60-191 98-222 (248)
103 1kgs_A DRRD, DNA binding respo 64.1 27 0.00091 29.0 7.9 81 116-199 31-113 (225)
104 1k66_A Phytochrome response re 63.7 24 0.00083 26.6 7.0 66 132-199 62-131 (149)
105 1tqj_A Ribulose-phosphate 3-ep 63.5 5.3 0.00018 35.8 3.7 122 60-201 75-219 (230)
106 3kto_A Response regulator rece 63.4 27 0.00093 26.5 7.3 40 159-199 80-119 (136)
107 3eqz_A Response regulator; str 63.0 44 0.0015 24.8 9.8 83 116-201 32-120 (135)
108 2yw3_A 4-hydroxy-2-oxoglutarat 63.0 33 0.0011 30.3 8.7 108 59-192 27-134 (207)
109 3qvq_A Phosphodiesterase OLEI0 62.9 8.5 0.00029 34.5 4.9 32 48-79 208-240 (252)
110 2zay_A Response regulator rece 62.6 39 0.0013 25.7 8.1 81 116-199 37-121 (147)
111 3nhm_A Response regulator; pro 62.4 21 0.00073 26.7 6.4 80 116-199 32-115 (133)
112 3t8y_A CHEB, chemotaxis respon 62.4 35 0.0012 27.2 8.0 75 116-192 56-132 (164)
113 3hv2_A Response regulator/HD d 62.0 47 0.0016 25.7 8.6 81 116-199 43-126 (153)
114 2tps_A Protein (thiamin phosph 61.7 24 0.00083 30.2 7.4 49 132-188 94-142 (227)
115 3qja_A IGPS, indole-3-glycerol 61.5 19 0.00064 33.5 7.1 70 118-192 123-192 (272)
116 1mxs_A KDPG aldolase; 2-keto-3 61.5 20 0.00068 32.4 7.1 108 59-190 40-147 (225)
117 3eul_A Possible nitrate/nitrit 61.4 31 0.0011 26.6 7.4 66 132-199 61-128 (152)
118 1qpo_A Quinolinate acid phosph 61.4 10 0.00034 35.9 5.3 41 161-204 196-236 (284)
119 1vzw_A Phosphoribosyl isomeras 61.2 28 0.00095 30.4 7.8 29 51-79 76-106 (244)
120 2w6r_A Imidazole glycerol phos 61.1 16 0.00055 32.3 6.3 114 59-190 32-177 (266)
121 3lte_A Response regulator; str 60.9 48 0.0017 24.6 8.4 26 174-199 93-118 (132)
122 3kht_A Response regulator; PSI 60.9 44 0.0015 25.4 8.1 81 116-199 36-121 (144)
123 3no3_A Glycerophosphodiester p 60.7 9.6 0.00033 34.0 4.8 32 48-79 194-226 (238)
124 4fk8_A Ferredoxin--NADP reduct 60.7 13 0.00046 32.7 5.7 101 214-331 18-129 (271)
125 1h1y_A D-ribulose-5-phosphate 60.5 12 0.0004 33.0 5.3 122 59-203 76-221 (228)
126 3mz2_A Glycerophosphoryl diest 60.0 12 0.00041 34.8 5.5 50 149-200 218-275 (292)
127 3ks6_A Glycerophosphoryl diest 59.8 10 0.00035 34.0 4.8 32 48-79 202-234 (250)
128 2jba_A Phosphate regulon trans 59.6 34 0.0012 25.2 7.1 81 116-199 31-115 (127)
129 3ilh_A Two component response 59.6 53 0.0018 24.6 8.8 82 116-199 40-132 (146)
130 2fli_A Ribulose-phosphate 3-ep 59.5 23 0.0008 30.2 6.9 18 61-78 75-92 (220)
131 1gpp_A Endonuclease PI-SCEI; h 59.4 7 0.00024 36.9 3.7 31 283-315 17-47 (237)
132 3rqi_A Response regulator prot 59.3 23 0.00079 28.9 6.6 77 116-198 36-117 (184)
133 2qr3_A Two-component system re 59.2 54 0.0018 24.5 8.4 40 159-199 80-119 (140)
134 4dad_A Putative pilus assembly 58.3 23 0.00078 27.1 6.1 67 131-199 66-134 (146)
135 1eep_A Inosine 5'-monophosphat 58.2 49 0.0017 31.7 9.6 115 58-191 153-287 (404)
136 1qkk_A DCTD, C4-dicarboxylate 57.9 56 0.0019 25.3 8.3 81 116-199 32-114 (155)
137 3cfy_A Putative LUXO repressor 57.9 61 0.0021 24.7 8.5 66 132-199 48-115 (137)
138 2y88_A Phosphoribosyl isomeras 57.7 34 0.0011 29.7 7.7 28 52-79 76-105 (244)
139 3mm4_A Histidine kinase homolo 57.7 27 0.00092 29.4 6.9 71 132-204 119-195 (206)
140 3cwo_X Beta/alpha-barrel prote 57.6 14 0.00047 30.8 5.0 21 58-78 63-83 (237)
141 1vzw_A Phosphoribosyl isomeras 57.6 12 0.0004 32.8 4.7 115 57-192 32-169 (244)
142 2aam_A Hypothetical protein TM 56.8 22 0.00075 33.9 6.8 114 54-193 23-146 (309)
143 3cu2_A Ribulose-5-phosphate 3- 56.6 27 0.00092 31.9 7.1 127 58-201 80-234 (237)
144 2xz9_A Phosphoenolpyruvate-pro 56.3 27 0.00092 33.4 7.3 96 105-205 14-159 (324)
145 2rjn_A Response regulator rece 56.2 67 0.0023 24.8 9.8 81 116-199 36-119 (154)
146 3r0j_A Possible two component 55.9 41 0.0014 28.8 7.9 81 116-199 52-134 (250)
147 1thf_D HISF protein; thermophI 55.8 66 0.0022 28.0 9.3 28 52-79 76-105 (253)
148 1vrd_A Inosine-5'-monophosphat 55.7 38 0.0013 33.2 8.5 115 58-191 237-371 (494)
149 2z6i_A Trans-2-enoyl-ACP reduc 55.7 28 0.00094 32.6 7.2 110 59-190 25-138 (332)
150 3ks6_A Glycerophosphoryl diest 55.6 9.2 0.00031 34.3 3.8 54 142-201 188-242 (250)
151 1zfj_A Inosine monophosphate d 55.4 20 0.00068 35.1 6.4 119 58-191 233-367 (491)
152 1y0e_A Putative N-acetylmannos 55.4 46 0.0016 28.5 8.1 114 60-189 26-146 (223)
153 4e2u_A PHO RADA intein; HINT-f 55.1 20 0.00068 30.6 5.7 57 282-343 10-91 (168)
154 2gkg_A Response regulator homo 54.8 22 0.00076 25.9 5.2 39 159-199 80-118 (127)
155 1xhf_A DYE resistance, aerobic 54.7 34 0.0011 25.2 6.3 81 116-199 32-113 (123)
156 1fnb_A Ferredoxin-NADP+ reduct 54.7 30 0.001 31.4 7.1 103 216-332 38-170 (314)
157 2rc5_A Ferredoxin-NADP reducta 54.5 15 0.00051 33.3 5.0 42 288-332 131-173 (314)
158 4g1v_A Flavohemoglobin; three 54.4 21 0.00071 33.7 6.2 105 214-333 148-281 (399)
159 3bo9_A Putative nitroalkan dio 54.3 29 0.00098 32.6 7.1 108 59-190 91-206 (326)
160 1xx1_A Smase I, sphingomyelina 54.3 13 0.00044 33.5 4.6 31 49-79 223-254 (285)
161 3eod_A Protein HNR; response r 53.9 36 0.0012 25.3 6.4 41 159-200 79-120 (130)
162 1vd6_A Glycerophosphoryl diest 53.6 16 0.00056 32.0 5.0 31 48-78 184-215 (224)
163 2qjg_A Putative aldolase MJ040 53.3 38 0.0013 30.1 7.5 68 131-203 178-257 (273)
164 3tsm_A IGPS, indole-3-glycerol 53.3 47 0.0016 31.2 8.3 70 118-192 130-199 (272)
165 2qsj_A DNA-binding response re 53.1 30 0.001 26.7 6.0 82 116-199 34-117 (154)
166 1x1o_A Nicotinate-nucleotide p 53.0 27 0.00092 33.0 6.7 41 160-203 197-237 (286)
167 1krh_A Benzoate 1,2-dioxygenas 52.8 33 0.0011 31.4 7.1 98 215-332 108-218 (338)
168 3cg0_A Response regulator rece 52.8 18 0.00063 27.2 4.6 40 159-199 82-121 (140)
169 1dbw_A Transcriptional regulat 52.7 68 0.0023 23.7 7.9 80 117-199 33-114 (126)
170 1p6q_A CHEY2; chemotaxis, sign 51.9 50 0.0017 24.4 6.9 66 132-199 51-120 (129)
171 2cnd_A NADH-dependent nitrate 51.8 58 0.002 28.4 8.3 111 214-332 11-144 (270)
172 1i3c_A Response regulator RCP1 51.5 47 0.0016 25.7 6.9 66 132-199 61-130 (149)
173 1zh2_A KDP operon transcriptio 51.2 16 0.00053 26.8 3.8 66 132-199 45-111 (121)
174 3ffs_A Inosine-5-monophosphate 51.2 23 0.00078 35.0 6.1 74 111-189 137-212 (400)
175 3inp_A D-ribulose-phosphate 3- 51.1 16 0.00056 33.7 4.8 126 60-203 99-243 (246)
176 2nv1_A Pyridoxal biosynthesis 51.1 1.5E+02 0.0051 27.2 11.7 110 53-189 24-152 (305)
177 3snk_A Response regulator CHEY 51.0 28 0.00094 26.4 5.4 40 159-199 87-126 (135)
178 1q7h_A Conserved hypothetical 51.0 11 0.00036 31.8 3.2 51 273-325 73-127 (153)
179 2otd_A Glycerophosphodiester p 50.9 16 0.00054 32.4 4.5 32 48-79 205-237 (247)
180 3l12_A Putative glycerophospho 50.0 15 0.00051 34.0 4.3 32 48-79 266-298 (313)
181 1y0e_A Putative N-acetylmannos 49.9 44 0.0015 28.7 7.1 110 59-191 77-206 (223)
182 3f6p_A Transcriptional regulat 49.5 16 0.00055 27.3 3.8 65 132-198 46-111 (120)
183 3qvq_A Phosphodiesterase OLEI0 48.9 14 0.00049 33.0 3.9 51 142-198 194-245 (252)
184 2y88_A Phosphoribosyl isomeras 48.7 23 0.00079 30.8 5.1 104 92-201 5-118 (244)
185 1fdr_A Flavodoxin reductase; f 48.7 22 0.00075 30.8 5.0 51 278-332 61-114 (248)
186 1zcc_A Glycerophosphodiester p 48.2 17 0.00057 32.5 4.2 32 48-79 192-225 (248)
187 3no3_A Glycerophosphodiester p 47.9 14 0.00049 32.9 3.8 46 149-199 186-232 (238)
188 3b2n_A Uncharacterized protein 47.9 80 0.0027 23.8 7.6 81 116-199 34-116 (133)
189 2qxy_A Response regulator; reg 47.7 46 0.0016 25.2 6.2 80 116-199 33-114 (142)
190 3h5i_A Response regulator/sens 47.7 8.1 0.00028 29.7 1.9 67 132-199 50-117 (140)
191 2pl1_A Transcriptional regulat 46.8 74 0.0025 23.1 7.0 81 116-199 29-111 (121)
192 1jcn_A Inosine monophosphate d 46.8 48 0.0017 32.8 7.7 112 59-191 256-389 (514)
193 1qo2_A Molecule: N-((5-phospho 46.6 88 0.003 27.3 8.6 107 58-192 31-167 (241)
194 3lua_A Response regulator rece 46.4 41 0.0014 25.5 5.7 84 116-200 34-121 (140)
195 2g1u_A Hypothetical protein TM 46.2 62 0.0021 26.1 7.1 107 60-192 32-139 (155)
196 1ep3_B Dihydroorotate dehydrog 45.8 39 0.0013 29.8 6.2 99 217-332 7-118 (262)
197 3cz5_A Two-component response 45.7 55 0.0019 25.2 6.5 81 116-199 36-118 (153)
198 3heb_A Response regulator rece 45.7 55 0.0019 25.2 6.5 40 159-199 89-128 (152)
199 3r2g_A Inosine 5'-monophosphat 45.4 1.1E+02 0.0039 29.7 9.9 116 58-191 100-230 (361)
200 3crn_A Response regulator rece 45.2 66 0.0023 24.2 6.7 81 116-199 32-114 (132)
201 3hzh_A Chemotaxis response reg 44.3 41 0.0014 26.4 5.6 40 159-199 111-150 (157)
202 1a04_A Nitrate/nitrite respons 44.2 81 0.0028 25.9 7.6 81 116-199 36-118 (215)
203 3rlg_A Sphingomyelin phosphodi 44.2 22 0.00076 34.4 4.6 30 50-79 241-271 (302)
204 2pz0_A Glycerophosphoryl diest 43.7 15 0.00051 32.8 3.2 32 48-79 209-241 (252)
205 1jbe_A Chemotaxis protein CHEY 43.2 96 0.0033 22.8 9.2 65 132-198 49-117 (128)
206 2qdx_A Ferredoxin reductase; o 42.6 25 0.00086 30.7 4.4 50 278-332 61-114 (257)
207 1tmy_A CHEY protein, TMY; chem 42.2 35 0.0012 25.0 4.6 65 132-198 47-113 (120)
208 3f4w_A Putative hexulose 6 pho 41.1 89 0.003 26.4 7.6 72 131-203 76-157 (211)
209 3qqw_A Putative citrate lyase; 40.5 52 0.0018 31.4 6.6 31 50-80 22-57 (332)
210 2h6r_A Triosephosphate isomera 40.4 60 0.0021 28.7 6.6 113 63-196 75-211 (219)
211 3d79_A PUA domain, putative un 40.1 16 0.00056 31.8 2.8 54 272-327 96-154 (179)
212 1xx1_A Smase I, sphingomyelina 40.1 34 0.0012 30.7 5.0 46 149-199 212-260 (285)
213 1dcf_A ETR1 protein; beta-alph 39.8 41 0.0014 25.3 4.7 38 161-199 85-122 (136)
214 2zbt_A Pyridoxal biosynthesis 39.8 2.1E+02 0.0073 25.8 13.8 113 52-189 23-152 (297)
215 3zv0_C H/ACA ribonucleoprotein 39.8 27 0.00091 31.9 4.2 53 273-327 78-134 (195)
216 3i42_A Response regulator rece 39.6 26 0.0009 26.0 3.6 67 132-201 47-117 (127)
217 3ch0_A Glycerophosphodiester p 39.5 19 0.00064 32.2 3.2 32 48-79 234-266 (272)
218 2oog_A Glycerophosphoryl diest 39.4 19 0.00064 32.8 3.2 31 48-78 239-270 (287)
219 4ggc_A P55CDC, cell division c 39.0 41 0.0014 28.1 5.0 41 266-306 7-61 (318)
220 1h1y_A D-ribulose-5-phosphate 38.8 1.2E+02 0.0041 26.5 8.3 113 58-190 20-146 (228)
221 2r25_B Osmosensing histidine p 38.4 35 0.0012 26.0 4.2 41 159-200 81-121 (133)
222 3l12_A Putative glycerophospho 37.6 22 0.00077 32.8 3.5 52 142-199 252-304 (313)
223 2qjg_A Putative aldolase MJ040 37.5 1.7E+02 0.0058 25.9 9.1 35 167-201 163-199 (273)
224 1yio_A Response regulatory pro 37.2 51 0.0017 26.9 5.3 81 116-199 33-115 (208)
225 3n53_A Response regulator rece 37.1 45 0.0015 25.2 4.6 81 116-199 31-115 (140)
226 1id1_A Putative potassium chan 37.0 74 0.0025 25.5 6.1 104 60-187 16-123 (153)
227 3ceu_A Thiamine phosphate pyro 36.9 40 0.0014 29.3 4.8 97 60-190 16-115 (210)
228 3ovp_A Ribulose-phosphate 3-ep 36.4 47 0.0016 29.9 5.3 126 60-203 77-217 (228)
229 2lcj_A PAB POLC intein; hydrol 36.3 77 0.0026 27.2 6.5 41 299-344 45-88 (185)
230 2pln_A HP1043, response regula 36.3 42 0.0014 25.3 4.3 40 159-199 86-126 (137)
231 2gwr_A DNA-binding response re 36.1 43 0.0015 28.4 4.8 68 132-201 49-117 (238)
232 1iq8_A Archaeosine tRNA-guanin 36.1 17 0.00059 37.5 2.7 51 273-325 510-564 (582)
233 3p42_A Predicted protein; beta 36.1 23 0.0008 32.4 3.3 64 239-305 114-200 (236)
234 1vhc_A Putative KHG/KDPG aldol 35.7 12 0.00042 33.8 1.3 33 166-201 76-108 (224)
235 2a9o_A Response regulator; ess 35.2 40 0.0014 24.4 3.9 40 159-199 72-111 (120)
236 1u5h_A CITE; TIM barrel, struc 35.1 64 0.0022 29.6 6.1 83 112-199 10-102 (273)
237 2eix_A NADH-cytochrome B5 redu 34.9 32 0.0011 29.6 3.8 87 214-312 10-109 (243)
238 3qll_A Citrate lyase; beta bar 34.8 79 0.0027 29.9 6.8 132 50-194 44-194 (316)
239 1srr_A SPO0F, sporulation resp 34.6 38 0.0013 25.0 3.8 66 132-199 47-114 (124)
240 3gl9_A Response regulator; bet 34.5 45 0.0015 24.9 4.2 65 132-198 46-114 (122)
241 3ctl_A D-allulose-6-phosphate 34.0 51 0.0017 29.8 5.1 128 60-204 70-218 (231)
242 1vc4_A Indole-3-glycerol phosp 33.3 70 0.0024 29.2 6.0 112 59-192 67-184 (254)
243 2qv0_A Protein MRKE; structura 33.3 1.5E+02 0.0052 22.2 8.9 64 132-199 55-120 (143)
244 3bw2_A 2-nitropropane dioxygen 33.2 56 0.0019 30.8 5.5 52 131-189 121-172 (369)
245 3l4b_C TRKA K+ channel protien 33.2 62 0.0021 27.5 5.3 105 60-191 13-121 (218)
246 2oqr_A Sensory transduction pr 33.2 91 0.0031 25.8 6.2 81 116-199 33-114 (230)
247 3usb_A Inosine-5'-monophosphat 33.1 49 0.0017 33.2 5.3 145 131-296 267-432 (511)
248 4avf_A Inosine-5'-monophosphat 32.8 78 0.0027 31.5 6.7 65 121-188 229-297 (490)
249 3t6k_A Response regulator rece 32.7 49 0.0017 25.2 4.2 67 131-199 47-117 (136)
250 1to3_A Putative aldolase YIHT; 32.3 1.3E+02 0.0044 28.3 7.7 14 62-75 113-126 (304)
251 3eoo_A Methylisocitrate lyase; 32.2 2.1E+02 0.0071 27.2 9.2 73 131-203 110-206 (298)
252 3r2g_A Inosine 5'-monophosphat 31.9 51 0.0018 32.1 5.1 109 58-189 54-169 (361)
253 1q5x_A Regulator of RNAse E ac 31.1 12 0.0004 32.5 0.4 28 292-320 50-77 (161)
254 3c85_A Putative glutathione-re 31.0 1.6E+02 0.0053 24.1 7.3 108 60-191 52-161 (183)
255 2jmz_A Hypothetical protein MJ 30.9 60 0.0021 27.9 4.9 46 277-323 99-146 (186)
256 2o55_A Putative glycerophospho 30.5 57 0.002 28.9 4.8 32 48-79 210-246 (258)
257 1mb3_A Cell division response 30.3 49 0.0017 24.2 3.7 66 132-199 45-114 (124)
258 1ka9_F Imidazole glycerol phos 30.1 46 0.0016 29.0 4.0 131 61-203 35-195 (252)
259 1s8n_A Putative antiterminator 30.1 1.7E+02 0.0058 23.8 7.3 38 161-199 87-124 (205)
260 3a10_A Response regulator; pho 29.9 1.5E+02 0.0053 21.2 6.9 64 131-198 44-109 (116)
261 3l9w_A Glutathione-regulated p 29.9 65 0.0022 31.4 5.4 101 60-188 17-121 (413)
262 1wbh_A KHG/KDPG aldolase; lyas 29.5 17 0.00059 32.4 1.2 79 116-198 23-104 (214)
263 2r6h_A NADH:ubiquinone oxidore 28.8 14 0.00047 32.8 0.4 40 287-332 124-164 (290)
264 3r4i_A Citrate lyase; TIM beta 28.7 1.5E+02 0.0053 28.2 7.7 28 53-80 24-56 (339)
265 4f3j_A Complement C1Q tumor ne 28.7 2.1E+02 0.0072 23.5 7.7 51 216-270 88-143 (148)
266 3cg4_A Response regulator rece 28.7 47 0.0016 25.0 3.4 81 116-199 36-120 (142)
267 3qll_A Citrate lyase; beta bar 28.5 3.1E+02 0.011 25.8 9.8 90 113-205 49-153 (316)
268 1f20_A Nitric-oxide synthase; 28.4 25 0.00085 34.4 2.2 61 265-330 205-285 (435)
269 1zcc_A Glycerophosphodiester p 28.0 29 0.001 30.9 2.4 62 133-201 171-233 (248)
270 1mvo_A PHOP response regulator 28.0 86 0.003 23.3 4.8 66 132-199 47-114 (136)
271 3vo2_A Putative uncharacterize 27.8 1E+02 0.0036 27.9 6.1 41 288-332 126-166 (310)
272 1gvh_A Flavohemoprotein; oxido 27.7 1E+02 0.0034 28.8 6.1 105 214-333 151-268 (396)
273 2yw3_A 4-hydroxy-2-oxoglutarat 27.4 32 0.0011 30.4 2.5 64 131-201 37-102 (207)
274 1dfa_A PI-SCEI endonuclease; i 27.0 13 0.00044 36.6 -0.1 33 281-315 5-37 (454)
275 2j48_A Two-component sensor ki 26.9 56 0.0019 23.1 3.4 76 117-198 31-110 (119)
276 1dz3_A Stage 0 sporulation pro 26.6 35 0.0012 25.5 2.3 66 132-199 48-116 (130)
277 1tvc_A Methane monooxygenase c 26.4 23 0.00078 30.9 1.4 50 278-332 73-125 (250)
278 2pcn_A S-adenosylmethionine:2- 26.3 19 0.00066 31.3 0.9 28 292-320 48-75 (161)
279 3khj_A Inosine-5-monophosphate 26.1 86 0.0029 30.2 5.5 55 131-188 116-172 (361)
280 2c6q_A GMP reductase 2; TIM ba 25.9 2.1E+02 0.0071 27.3 8.1 70 116-191 168-254 (351)
281 3e61_A Putative transcriptiona 25.6 1.2E+02 0.004 25.8 5.7 28 173-200 55-83 (277)
282 4e38_A Keto-hydroxyglutarate-a 24.8 77 0.0026 29.1 4.7 33 166-201 93-125 (232)
283 4dbe_A Orotidine 5'-phosphate 24.8 65 0.0022 29.0 4.1 32 172-203 125-156 (222)
284 2o55_A Putative glycerophospho 24.7 80 0.0027 28.0 4.6 51 142-198 196-251 (258)
285 4a29_A Engineered retro-aldol 24.7 2.4E+02 0.0082 26.6 8.1 111 59-190 115-234 (258)
286 1o1z_A GDPD, glycerophosphodie 24.6 83 0.0029 27.8 4.8 30 48-78 196-226 (234)
287 3cwo_X Beta/alpha-barrel prote 24.4 1.5E+02 0.0052 24.3 6.1 70 132-203 25-99 (237)
288 2bmw_A Ferredoxin--NADP reduct 24.3 19 0.00065 32.4 0.5 41 288-332 116-156 (304)
289 1ys7_A Transcriptional regulat 24.3 52 0.0018 27.3 3.2 81 116-199 36-118 (233)
290 3m6m_D Sensory/regulatory prot 24.3 81 0.0028 24.3 4.1 39 160-199 91-129 (143)
291 4dql_A Bifunctional P-450/NADP 24.1 31 0.0011 33.4 2.0 38 288-330 207-246 (393)
292 2hqr_A Putative transcriptiona 24.1 59 0.002 26.9 3.5 40 159-199 68-108 (223)
293 2aef_A Calcium-gated potassium 24.1 1.1E+02 0.0039 26.1 5.4 63 117-188 58-124 (234)
294 1jmx_B Amine dehydrogenase; ox 23.9 3.2E+02 0.011 22.9 9.2 71 235-312 2-76 (349)
295 3cu5_A Two component transcrip 23.6 1.1E+02 0.0036 23.5 4.6 81 116-199 34-116 (141)
296 1nxj_A Probable S-adenosylmeth 23.5 25 0.00084 31.4 1.0 28 292-320 79-106 (183)
297 4fxs_A Inosine-5'-monophosphat 23.4 97 0.0033 31.0 5.4 56 131-189 242-300 (496)
298 2pz0_A Glycerophosphoryl diest 22.8 33 0.0011 30.5 1.8 57 133-198 189-246 (252)
299 1gz0_A Hypothetical tRNA/RRNA 22.6 3.5E+02 0.012 24.5 8.6 30 48-79 8-40 (253)
300 3nfg_A DNA-directed RNA polyme 22.2 22 0.00076 29.4 0.5 27 243-269 18-62 (102)
301 3lye_A Oxaloacetate acetyl hyd 22.1 3E+02 0.01 26.2 8.4 72 132-203 116-213 (307)
302 3m9b_A Proteasome-associated A 22.0 3E+02 0.01 26.0 8.1 30 288-317 158-188 (251)
303 2pia_A Phthalate dioxygenase r 21.8 24 0.00082 32.4 0.7 40 287-332 77-119 (321)
304 3sd4_A PHD finger protein 20; 21.8 1.2E+02 0.004 22.6 4.4 35 296-331 12-46 (69)
305 1v6z_A Hypothetical protein TT 21.7 47 0.0016 30.0 2.5 72 282-358 11-100 (228)
306 2eis_A Hypothetical protein TT 21.6 68 0.0023 24.5 3.2 29 288-321 51-79 (133)
307 2ln7_A LPXTG-SITE transpeptida 21.6 75 0.0026 26.7 3.7 31 291-322 70-100 (147)
308 1geq_A Tryptophan synthase alp 21.3 2.1E+02 0.0071 24.8 6.6 93 111-204 7-130 (248)
309 3glc_A Aldolase LSRF; TIM barr 21.3 4.9E+02 0.017 24.5 9.6 67 132-204 202-278 (295)
310 4ej6_A Putative zinc-binding d 20.8 3.4E+02 0.012 25.1 8.4 128 49-183 182-327 (370)
311 4adx_I AIF6; ribosome, protein 20.8 1.9E+02 0.0064 26.6 6.4 97 119-230 75-192 (222)
312 1rpx_A Protein (ribulose-phosp 20.7 4E+02 0.014 22.8 8.6 110 58-190 24-148 (230)
313 3mz2_A Glycerophosphoryl diest 20.5 99 0.0034 28.6 4.5 32 48-79 226-268 (292)
314 1vi4_A Regulator of ribonuclea 20.3 31 0.0011 30.5 1.0 28 292-320 53-80 (174)
315 4e2u_A PHO RADA intein; HINT-f 20.3 1.5E+02 0.0051 25.1 5.3 19 290-308 107-125 (168)
316 1a3w_A Pyruvate kinase; allost 20.3 1E+02 0.0036 31.4 5.0 37 169-205 193-230 (500)
317 1ypf_A GMP reductase; GUAC, pu 20.3 2.5E+02 0.0085 26.3 7.3 70 116-191 156-241 (336)
318 3sjy_A Translation initiation 20.2 1.8E+02 0.0063 27.4 6.4 59 264-322 336-403 (403)
319 3lo8_A Ferredoxin--NADP reduct 20.2 31 0.0011 31.2 1.0 107 214-332 27-168 (311)
320 1vhy_A Hypothetical protein HI 20.2 52 0.0018 30.3 2.6 73 282-358 18-109 (257)
321 1mxs_A KDPG aldolase; 2-keto-3 20.1 27 0.00091 31.6 0.6 29 165-196 84-112 (225)
No 1
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=95.31 E-value=0.042 Score=46.74 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=38.7
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe----eeeEEEeccceEEEEEE
Q 017770 281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV----VGRVKIESRPLILVEAK 333 (366)
Q Consensus 281 HaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~----VGRvKIE~RPLlLIeAe 333 (366)
-+-|.+++|.++-++||+.||+||..|.+|+..... ..|-.-.+++++-|+.+
T Consensus 5 ~t~V~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 5 ESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp TCEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCEEEeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 356899999999999999999999999999853322 23323234567777654
No 2
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=92.97 E-value=0.18 Score=46.78 Aligned_cols=91 Identities=12% Similarity=0.205 Sum_probs=68.4
Q ss_pred CeeEEEEEe-cChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017770 109 RRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 109 k~v~~~~~v-~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q---~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (366)
..++.++.+ .+++-.|.++. ...|+++++..| .+.|.+.+.+.++ ..+..++..++..+. .....+|+.|+|
T Consensus 15 ~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~~ 90 (261)
T 3qz6_A 15 SVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGAE 90 (261)
T ss_dssp CEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTCC
T ss_pred CEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCCC
Confidence 556888888 88888777665 368999998876 4667665554433 235678999987655 456678899999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 017770 185 GIVLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~ 203 (366)
||++. .+++++++++.+.+
T Consensus 91 gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 91 GFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp EEEETTCCSHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHh
Confidence 99997 57899999988876
No 3
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=92.89 E-value=0.74 Score=43.03 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=69.3
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+...+..|.+.|+|+|++...+ .+..+++-.... .-|.. .++++.+.++++.+... .++++
T Consensus 124 d~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~-------------~lGl~--~lvev~t~ee~~~A~~~--Gad~I 186 (272)
T 3qja_A 124 QPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE-------------SLGMT--ALVEVHTEQEADRALKA--GAKVI 186 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH-------------HTTCE--EEEEESSHHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH-------------HCCCc--EEEEcCCHHHHHHHHHC--CCCEE
Confidence 4556889999999999873211 111121111100 11322 46788999988776543 68999
Q ss_pred EEeCCCCee--eehhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 017770 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (366)
Q Consensus 137 vv~~~DW~i--IPlENliA~~q~~--~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~e 195 (366)
-++.+|-+- ..++.+..-.+.. +..++++ +++.++++. .++.|+|||++-. +||.+
T Consensus 187 Gv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~---l~~~GadgvlVGsal~~a~dp~~ 253 (272)
T 3qja_A 187 GVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLA---YAGAGADAVLVGEGLVTSGDPRA 253 (272)
T ss_dssp EEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHH---HHHTTCSEEEECHHHHTCSCHHH
T ss_pred EECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHH---HHHcCCCEEEEcHHHhCCCCHHH
Confidence 998765322 3445443222221 3456665 467888765 4678999999854 67765
No 4
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=91.25 E-value=0.31 Score=40.21 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=38.5
Q ss_pred EecCCceeeeeec---cCCCeEEEEcCCCCeeEEeee-eEEEeccceEEEEEE
Q 017770 285 LVPGGKTCYLSEL---KSGKEVIVVDQKGRQRTAVVG-RVKIESRPLILVEAK 333 (366)
Q Consensus 285 ~~PggkT~YLSEL---~sG~eVLvVd~~G~tR~a~VG-RvKIE~RPLlLIeAe 333 (366)
.+++|+.+-+.|| +.||+|+..|.+|+.....|= -.+-..+|++.|+.+
T Consensus 10 ~~~~G~~~~I~~l~~~~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t~ 62 (139)
T 2in0_A 10 DPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIA 62 (139)
T ss_dssp CTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEET
T ss_pred ECCCCCEEEHHHhhCccCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEeC
Confidence 4589999999999 999999999999997544433 334568888888653
No 5
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=90.86 E-value=1.2 Score=41.79 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCC-eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhh---hhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 017770 107 GDR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (366)
Q Consensus 107 ~gk-~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENl---iA~~q~~~~~l~a~v~~~~eA~~al~~LE~G 182 (366)
+|+ .++.++.+.+++..+.++. ...|+++++..|-. .=.|.+ +.+++..+..++..++..+.. ....+|+.|
T Consensus 36 ~G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~-di~~~ld~g 111 (287)
T 2v5j_A 36 AGRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPV-QIKQLLDVG 111 (287)
T ss_dssp TTCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHH-HHHHHHHTT
T ss_pred CCCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHH-HHHHHHhCC
Confidence 466 7889999999999887765 36899999888762 223333 333344455788888766543 456678899
Q ss_pred cCeEEEe-cCCHHHHHHHHHhh
Q 017770 183 LGGIVLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 183 ~DGVvl~-~~d~~ev~~l~~~~ 203 (366)
+|||++. .+++++++++.+.+
T Consensus 112 a~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 112 TQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp CCEEEESCCCSHHHHHHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHHHh
Confidence 9999996 46788888887765
No 6
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=89.92 E-value=1.7 Score=39.76 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=65.3
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehh-----hhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 017770 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE-----NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (366)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlE-----NliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (366)
.++.+..+.+++..+.+.. ...|+++++..|- |.| ..+.+++..+..++..++..+..- ...+|+.|+|
T Consensus 20 ~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~---p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~-i~~~l~~g~~ 93 (256)
T 1dxe_A 20 QIGCWSALSNPISTEVLGL--AGFDWLVLDGEHA---PNDISTFIPQLMALKGSASAPVVRVPTNEPVI-IKRLLDIGFY 93 (256)
T ss_dssp EEEEEECSCSHHHHHHHTT--SCCSEEEEESSSS---SCCHHHHHHHHHHTTTCSSEEEEECSSSCHHH-HHHHHHTTCC
T ss_pred eEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCC---CCCHHHHHHHHHHHHhCCCcEEEECCCCCHHH-HHHHHhcCCc
Confidence 4677888888988777664 3689999998886 653 445445544556888888655443 5678899999
Q ss_pred eEEEe-cCCHHHHHHHHHhhc
Q 017770 185 GIVLK-VEDVKAVLALKEYFD 204 (366)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~~ 204 (366)
||++. .+++++++++.+.+.
T Consensus 94 gI~~P~V~s~~ev~~~~~~~~ 114 (256)
T 1dxe_A 94 NFLIPFVETKEEAELAVASTR 114 (256)
T ss_dssp EEEESCCCSHHHHHHHHHTTS
T ss_pred eeeecCcCCHHHHHHHHHHhc
Confidence 99885 457899988877763
No 7
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=89.83 E-value=0.73 Score=38.73 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=41.9
Q ss_pred eEEEecC-Cceeeeeecc--CCCeEEEEcC-CCCeeEEeeeeE-EEeccceEEEEEE
Q 017770 282 AYVLVPG-GKTCYLSELK--SGKEVIVVDQ-KGRQRTAVVGRV-KIESRPLILVEAK 333 (366)
Q Consensus 282 aYv~~Pg-gkT~YLSEL~--sG~eVLvVd~-~G~tR~a~VGRv-KIE~RPLlLIeAe 333 (366)
+-|.+++ |+.+-+.||. .|++|+.+|. +|+.....|-++ +...+|++.|+.+
T Consensus 8 t~V~~~~~G~~~~I~el~~~~g~~V~s~d~~~g~~~~~~v~~~~~~~~~~~~~i~t~ 64 (158)
T 1mi8_A 8 SLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTR 64 (158)
T ss_dssp CEEEETTTTEEEESGGGTTCCSCEEEEEETTTTEEEEEECCEEEEEEEEEEEEEEET
T ss_pred cEEEecCCCeEEEHHHhhhccCCEEEEEeCCCCEEEEEEeeeeeecCCceEEEEEEC
Confidence 4678899 9999999999 8999999996 788777666444 4567888888775
No 8
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=89.39 E-value=1.3 Score=40.80 Aligned_cols=92 Identities=9% Similarity=0.079 Sum_probs=65.3
Q ss_pred CC-eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhh---cccCCCceEEEEcCCHHHHHHHHHHhhccc
Q 017770 108 DR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA---SFQGSGKTVFAISKTPSEAQIFLEALEQGL 183 (366)
Q Consensus 108 gk-~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA---~~q~~~~~l~a~v~~~~eA~~al~~LE~G~ 183 (366)
|+ .++.+..+.+++..+.+.. ...|+++++..|- ....|.+.+ +++..+..++..++..+. .....+|+.|+
T Consensus 16 g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~-~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~-~~i~~~l~~g~ 91 (267)
T 2vws_A 16 GEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHA-PNTIQDLYHQLQAVAPYASQPVIRPVEGSK-PLIKQVLDIGA 91 (267)
T ss_dssp TCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTS-CCCHHHHHHHHHHHTTSSSEEEEECSSCCH-HHHHHHHHTTC
T ss_pred CCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCC-CCCHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHhCC
Confidence 55 5788889999998887765 3689999988875 345554433 333345568888875443 33456788999
Q ss_pred CeEEEe-cCCHHHHHHHHHhh
Q 017770 184 GGIVLK-VEDVKAVLALKEYF 203 (366)
Q Consensus 184 DGVvl~-~~d~~ev~~l~~~~ 203 (366)
|||++. .+++++++++.+.+
T Consensus 92 ~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 92 QTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp CEEEECCCCSHHHHHHHHHHT
T ss_pred CEEEeCCCCCHHHHHHHHHHH
Confidence 999996 46788988887765
No 9
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.35 E-value=1.7 Score=39.42 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=62.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 60 KQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~-------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
.+.+..+++.|+|.+++.... .++.+...+. |.. ....+.+.++.+.+.. ..
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH-----------------GLL--AMADCSTVNEGISCHQ--KG 149 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECSSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC-----------------CCE--EEEecCCHHHHHHHHh--CC
Confidence 445788999999988764311 2333333222 322 4457788887665543 36
Q ss_pred CCeEEEeCCCCe-----eeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 133 ~~~vvv~~~DW~-----iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++++.+...+-+ --|--+++.++...+..+++. ++++++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (229)
T 3q58_A 150 IEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAI---EHGAWAVTVGS 211 (229)
T ss_dssp CSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHH---HcCCCEEEEch
Confidence 788865322211 122224444443335567776 56788887665 56999999864
No 10
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=89.02 E-value=0.73 Score=40.83 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=40.8
Q ss_pred eEEEecCCceeeeeeccCCCe--------EEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 282 AYVLVPGGKTCYLSELKSGKE--------VIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG~e--------VLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
+-|.+++|++.-+.||..|++ |+.+|.+|+.... +.-.+-..+|++.|+.+
T Consensus 7 T~V~~~dG~~~~I~eL~~G~~~~~~~~v~v~~~d~~g~~~~~-~~~~~~g~k~~~~I~T~ 65 (199)
T 1am2_A 7 ALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLA-DRLFHSGEHPVYAVRTV 65 (199)
T ss_dssp CEEECSTTCEEEGGGSSTTCCTTEEEEEEEEEECTTSCEEEE-EEEEEEEEEEEEEEEET
T ss_pred eEEEcCCCCEEEHHHhhCccccccccceEEEEECCCCCEEEE-EEEEECCCceEEEEEEC
Confidence 457889999999999999998 9999999987765 33344456788888764
No 11
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=88.99 E-value=0.8 Score=39.63 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceee-ee-eeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL-LD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~-i~-~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
.+.+..+++.|++.+-+...+.+..+.+.++.. .. ++.+ +. ..+.++++.+.+.. ..++.+.
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~v-------------g~-g~~~~~~~i~~a~~--~Gad~V~ 85 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALI-------------GA-GTVLKPEQVDALAR--MGCQLIV 85 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEE-------------EE-ECCCSHHHHHHHHH--TTCCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEE-------------Ee-ccccCHHHHHHHHH--cCCCEEE
Confidence 677888999999998876544333333333221 00 1111 11 13456776665554 3567776
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+...+. .++...+..+..++..+.|++|++. +.+.|+|.|.+.|.
T Consensus 86 ~~~~~~------~~~~~~~~~g~~~~~g~~t~~e~~~---a~~~G~d~v~v~~t 130 (212)
T 2v82_A 86 TPNIHS------EVIRRAVGYGMTVCPGCATATEAFT---ALEAGAQALKIFPS 130 (212)
T ss_dssp CSSCCH------HHHHHHHHTTCEEECEECSHHHHHH---HHHTTCSEEEETTH
T ss_pred eCCCCH------HHHHHHHHcCCCEEeecCCHHHHHH---HHHCCCCEEEEecC
Confidence 544332 2333333334456666899999854 46789999998653
No 12
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=88.86 E-value=1.5 Score=39.01 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=77.3
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCcchhhhhhccce------eeeeeeeecCCc--------cccCCCCeeEEEEE
Q 017770 53 VWIWT--ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTI------ALLDPLFIKEGE--------VYDSGDRRVGSIIE 116 (366)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i------~~i~~l~~~~g~--------~~~~~gk~v~~~~~ 116 (366)
+.+-+ .+.+....|++.|++.++..+...........+ ..++.++++|.. .+...|..+. .
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~---~ 153 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVH---E 153 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHTTTCEEE---E
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEE---E
Confidence 55555 467888889999999999876432221111111 123446667663 2345565432 4
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhh---hhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAEN---IVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlEN---liA~~q----~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..+.++.-.........+.+++ |+. .|-.| ++..+. .....|+....+. +......+++.|++|.+.+
T Consensus 154 a~~~~eal~~l~~~~~~dlvll---D~~-mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~-~~~~~~~a~~~Ga~~yl~K 228 (259)
T 3luf_A 154 ASHAREALATLEQHPAIRLVLV---DYY-MPEIDGISLVRMLRERYSKQQLAIIGISVSD-KRGLSARYLKQGANDFLNQ 228 (259)
T ss_dssp ESSHHHHHHHHHHCTTEEEEEE---CSC-CSSSCHHHHHHHHHHHCCTTTSEEEEEECSS-SSSHHHHHHHTTCSEEEES
T ss_pred eCCHHHHHHHHhcCCCCCEEEE---cCC-CCCCCHHHHHHHHHhccCCCCCeEEEEEccC-CHHHHHHHHhcChhheEcC
Confidence 4666543322222112355666 443 23211 222221 2234565444333 3334567899999999999
Q ss_pred cCCHHHHHH-HHHhh
Q 017770 190 VEDVKAVLA-LKEYF 203 (366)
Q Consensus 190 ~~d~~ev~~-l~~~~ 203 (366)
|-+++++.. ++..+
T Consensus 229 P~~~~~L~~~i~~~l 243 (259)
T 3luf_A 229 PFEPEELQCRVSHNL 243 (259)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999988754 34444
No 13
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=86.25 E-value=8.1 Score=34.93 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=68.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv 138 (366)
.++..++.+.|+.++-+.. .+..++..+..-+ |++-...+..+ |.. . -|+ +.++.+++.. ..+|.+++
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~--~~~i~~ir~~v~~-Pvig~~k~~~~--~~~--~--~I~~~~~~i~~~~~--aGad~I~l 107 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEG--IENLRTVRPHLSV-PIIGIIKRDLT--GSP--V--RITPYLQDVDALAQ--AGADIIAF 107 (229)
T ss_dssp HHHHHHHHHTTCSEEEEES--HHHHHHHGGGCCS-CEEEECBCCCS--SCC--C--CBSCSHHHHHHHHH--HTCSEEEE
T ss_pred HHHHHHHHHCCCcEEEECC--HHHHHHHHHhcCC-CEEEEEeecCC--CCc--e--EeCccHHHHHHHHH--cCCCEEEE
Confidence 6778888899999998854 3343433332111 32210000000 100 0 122 3345544432 46888888
Q ss_pred eCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 139 DLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 139 ~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
+.. ++ -.++.++..+...+-.+++.+.+.+||+.+ ++.|+|.|..
T Consensus 108 ~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (229)
T 3q58_A 108 DASFRSRP--VDIDSLLTRIRLHGLLAMADCSTVNEGISC---HQKGIEFIGT 155 (229)
T ss_dssp ECCSSCCS--SCHHHHHHHHHHTTCEEEEECSSHHHHHHH---HHTTCSEEEC
T ss_pred CccccCCh--HHHHHHHHHHHHCCCEEEEecCCHHHHHHH---HhCCCCEEEe
Confidence 765 23 367888888877677899999999999765 5789999964
No 14
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=84.95 E-value=0.48 Score=43.83 Aligned_cols=143 Identities=11% Similarity=0.008 Sum_probs=85.8
Q ss_pred cEEEEEe-CchhHHHHHHHhCCcEEEEcCcch----hhhh-hccce--eeeee-eeecCCc--cc---cCCCCeeEEEEE
Q 017770 51 KRVWIWT-ESKQVMTAAVERGWNTFVFLSENQ----QLAI-DWSTI--ALLDP-LFIKEGE--VY---DSGDRRVGSIIE 116 (366)
Q Consensus 51 K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~~~----~~~~-~l~~i--~~i~~-l~~~~g~--~~---~~~gk~v~~~~~ 116 (366)
--.|+.. .+.+.+..|..+|+|.++++-||. +++. .+..+ .-..+ +.++..+ .+ -.-|-....+=.
T Consensus 17 ~g~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~ 96 (261)
T 3qz6_A 17 VGTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPG 96 (261)
T ss_dssp EEEEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETT
T ss_pred EEEEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECC
Confidence 3478888 889999999999999999998871 2111 11000 00111 1112111 11 011322223334
Q ss_pred ecChhhhhhhccccCC-----CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEec
Q 017770 117 VSTPQELQQLQPADGQ-----AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKV 190 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~-----~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE-~G~DGVvl~~ 190 (366)
|.+++|.+.+...... ..+-......|...|+++-++... .+..|++-+.+++-...+-+++. .|+||+.+-+
T Consensus 97 v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~-~~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG~ 175 (261)
T 3qz6_A 97 VQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERN-DEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGP 175 (261)
T ss_dssp CCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHH-TTCEEEEEECCHHHHHTHHHHHTSTTCCEEEECH
T ss_pred cCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCC-CCeEEEEEECCHHHHHHHHHHhCCCCCCEEEECH
Confidence 7788888876554321 011011223555556666666543 46789999999999999999997 4999999988
Q ss_pred CCHH
Q 017770 191 EDVK 194 (366)
Q Consensus 191 ~d~~ 194 (366)
.|..
T Consensus 176 ~DL~ 179 (261)
T 3qz6_A 176 RDLS 179 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 15
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=84.64 E-value=3.6 Score=37.28 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=60.5
Q ss_pred hhHHHHHHHhCCcEEEEcCc-------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 60 KQVMTAAVERGWNTFVFLSE-------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~-------~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
.+.+..+++.|+|.+++... -.++.+...+. |.. ..+.+.+.++.+.+.. ..
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~-----------------g~~--v~~~v~t~eea~~a~~--~G 149 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH-----------------HLL--TMADCSSVDDGLACQR--LG 149 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT-----------------TCE--EEEECCSHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC-----------------CCE--EEEeCCCHHHHHHHHh--CC
Confidence 44578899999998876431 12333332222 322 4457788887665543 35
Q ss_pred CCeEEEeCCCCe-----eeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 133 ~~~vvv~~~DW~-----iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++++.+...+.+ --|--+++.++...+..+++. +.+.++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (232)
T 3igs_A 150 ADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAI---RYGAWAVTVGS 211 (232)
T ss_dssp CSEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHH---HcCCCEEEEeh
Confidence 787765322111 112112333332224567766 45788887665 56999999864
No 16
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=84.37 E-value=10 Score=34.29 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=67.8
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.++..++.+.|+.++.+.. ++...+++.-++-++... .++ .. |.. .+ ...+.++.+++.. ..+|.+++
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~-k~d---~~--~~~--~~-I~~~~~~i~~~~~--~Gad~V~l 107 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGII-KRD---LD--ESP--VR-ITPFLDDVDALAQ--AGAAIIAV 107 (232)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEEC-BCC---CS--SCC--CC-BSCSHHHHHHHHH--HTCSEEEE
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEE-eec---CC--Ccc--eE-eCccHHHHHHHHH--cCCCEEEE
Confidence 6778888999999988864 223333333333222100 010 00 100 00 1123445544432 46888988
Q ss_pred eCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 139 DLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 139 ~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
... ++ -.++.++..+...+-.+++.+.+.+||+.+ ++.|+|.|..
T Consensus 108 ~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (232)
T 3igs_A 108 DGTARQRP--VAVEALLARIHHHHLLTMADCSSVDDGLAC---QRLGADIIGT 155 (232)
T ss_dssp ECCSSCCS--SCHHHHHHHHHHTTCEEEEECCSHHHHHHH---HHTTCSEEEC
T ss_pred CccccCCH--HHHHHHHHHHHHCCCEEEEeCCCHHHHHHH---HhCCCCEEEE
Confidence 764 23 357788888877677899999999999765 5789999963
No 17
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=84.10 E-value=5.7 Score=36.20 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=75.0
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcc----hhhhhhccce---eeeee-eeecCCc------cccCCCCeeEEEEEe
Q 017770 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN----QQLAIDWSTI---ALLDP-LFIKEGE------VYDSGDRRVGSIIEV 117 (366)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~vv~~~~----~~~~~~l~~i---~~i~~-l~~~~g~------~~~~~gk~v~~~~~v 117 (366)
..|....+.+.+..|..+|+|.++++-|| ++.++..-.. .-..+ +-+.+.+ .++ .|-.-..+=.|
T Consensus 22 ~~~l~v~~p~~~e~a~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~-~g~~gI~~P~V 100 (256)
T 1dxe_A 22 GCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD-IGFYNFLIPFV 100 (256)
T ss_dssp EEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHH-TTCCEEEESCC
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHh-cCCceeeecCc
Confidence 46777788999999999999999999766 2333221110 00001 1111110 111 12221223345
Q ss_pred cChhhhhhhccccCCCCeE---E---EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEec
Q 017770 118 STPQELQQLQPADGQAENI---V---IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKV 190 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~v---v---v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~ 190 (366)
.+++|.+.+.......+.= + .....|. +++..+... +.+..|++-+.+++-...+-+++.. |+||+.+-|
T Consensus 101 ~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g--~~~~~~~~~-~~~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~ 177 (256)
T 1dxe_A 101 ETKEEAELAVASTRYPPEGIRGVSVSHRANMFG--TVADYFAQS-NKNITILVQIESQQGVDNVDAIAATEGVDGIFVGP 177 (256)
T ss_dssp CSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGG--TSTTHHHHH-TTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECH
T ss_pred CCHHHHHHHHHHhcCCCCCccCCCcchhhhhcC--chHHHHHhc-CcccEEEEEECCHHHHHhHHHHhCCCCCCEEEECh
Confidence 5666665554433210000 0 0001122 122333222 2356899999999999999999875 999999988
Q ss_pred CCHH
Q 017770 191 EDVK 194 (366)
Q Consensus 191 ~d~~ 194 (366)
.|..
T Consensus 178 ~DL~ 181 (256)
T 1dxe_A 178 SDLA 181 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 18
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=83.99 E-value=2.1 Score=41.35 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=64.8
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhc---ccCCC---ceEEEEcCCHHHHHHHHHHhhccc
Q 017770 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS---FQGSG---KTVFAISKTPSEAQIFLEALEQGL 183 (366)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~---~q~~~---~~l~a~v~~~~eA~~al~~LE~G~ 183 (366)
.++.+..+.+++..+.+... ..|+++++..|. ....|.+... ++..+ ..++..+++.+.. ....+|+.|+
T Consensus 43 ~ig~~l~i~~p~~~e~a~~~--GaD~vilDlEha-~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~-di~~~LdaGa 118 (339)
T 1izc_A 43 LMGVAHGIPSTFVTKVLAAT--KPDFVWIDVEHG-MFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEV-SLSTALDAGA 118 (339)
T ss_dssp EEEEEECSCCHHHHHHHHHT--CCSEEEEETTTS-CCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHH-HHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHhC--CCCEEEEECCCC-CCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHH-HHHHHHhCCC
Confidence 46778888899887777653 689999988873 3455554333 32112 5688899887654 4466788999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 017770 184 GGIVLK-VEDVKAVLALKEYFD 204 (366)
Q Consensus 184 DGVvl~-~~d~~ev~~l~~~~~ 204 (366)
+||++. .+++++++++++.+.
T Consensus 119 ~gImlP~V~saee~~~~~~~~~ 140 (339)
T 1izc_A 119 AGIVIPHVETVEEVREFVKEMY 140 (339)
T ss_dssp SEEEETTCCCHHHHHHHHHHHS
T ss_pred CEEEeCCCCCHHHHHHHHHHhc
Confidence 999985 457899998888764
No 19
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=83.50 E-value=4.1 Score=38.38 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=69.8
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCc-chhhh-hhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhh--hccccC
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSE-NQQLA-IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQ--LQPADG 131 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~-~~~~~-~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~--~~~~~~ 131 (366)
|..+.+++.++-+.|.-+++.... +.+.. +.+.++... .++++++-+-+.++...+. ++.. .
T Consensus 36 gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~-------------~~~p~gVnl~~~~~~~~~~~~~~~~-~ 101 (326)
T 3bo9_A 36 WAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQK-------------TDKPFGVNIILVSPWADDLVKVCIE-E 101 (326)
T ss_dssp TTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTT-------------CSSCEEEEEETTSTTHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEEeccCCCHHHHHHHHHH-C
Confidence 345688999999999989986542 22221 122222110 1233444433433322122 2222 4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.+.+.+.+.+ | ..++..+...+.+++..+.+.++|+.+ .+.|+|+|++..
T Consensus 102 g~d~V~l~~g~----p-~~~~~~l~~~g~~v~~~v~s~~~a~~a---~~~GaD~i~v~g 152 (326)
T 3bo9_A 102 KVPVVTFGAGN----P-TKYIRELKENGTKVIPVVASDSLARMV---ERAGADAVIAEG 152 (326)
T ss_dssp TCSEEEEESSC----C-HHHHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CCCEEEECCCC----c-HHHHHHHHHcCCcEEEEcCCHHHHHHH---HHcCCCEEEEEC
Confidence 68888887775 4 456777766678999999999999865 578999999965
No 20
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=83.40 E-value=1.6 Score=42.46 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=35.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|..+|.|.+|++. +++.|+|+|+|+.-+++++++..+.+
T Consensus 232 ~kIeVEVdtldea~e---Al~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 232 KPVEVETETLAELEE---AISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp SCEEEEESSHHHHHH---HHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHH---HHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 579999999999885 45679999999999999998888766
No 21
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=83.00 E-value=1.1 Score=45.53 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=89.4
Q ss_pred CchhHHH--HHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMT--AAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT--~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+|++.+. .|+|.|+|.+.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-....|
T Consensus 182 kD~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~-------------l~~~g~~~~iiaKIE~~eav~nldeIl~~sD 248 (461)
T 3qtg_A 182 EDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSL-------------LTELGFQSQVAVKIETKGAVNNLEELVQCSD 248 (461)
T ss_dssp HHHHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHHH-------------HHHTTCCCEEEEEECSHHHHHTHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcc
Confidence 5788888 99999999988874 334555544443 3333455778889999999888766666678
Q ss_pred eEEEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 017770 135 NIVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (366)
Q Consensus 135 ~vvv~~~DW~-iIPlENl-------iA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (366)
-++|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 249 gImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G 328 (461)
T 3qtg_A 249 YVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASG 328 (461)
T ss_dssp EEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTS
T ss_pred cEEEccccccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 8888433321 1355554 33332333334431 345688888899999999999998432
Q ss_pred ---HHHHHHHHHhhcc
Q 017770 193 ---VKAVLALKEYFDG 205 (366)
Q Consensus 193 ---~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 329 ~yPveaV~~m~~I~~~ 344 (461)
T 3qtg_A 329 KYPLAAVSWLSRILMN 344 (461)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3667777777643
No 22
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=82.88 E-value=1.1 Score=41.96 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=59.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vvv 138 (366)
...+..+.|.|+|+++++.-..+...++... .++.|.....++.- ++.|.++.++.... +++-+
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~-------------~~~~gl~~i~liaP~t~~eri~~i~~~~~--gfvY~ 177 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEESAPFSKA-------------AKAHGIAPIFIAPPNADADTLKMVSEQGE--GYTYL 177 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCC--CcEEE
Confidence 5678999999999999986433322222222 12223332222222 33455565555432 33333
Q ss_pred -eC---C--CCeee-ehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 -DL---P--DWQVI-PAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 -~~---~--DW~iI-PlENliA~~q~~~~-~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.. + .-.+. +++++++++..... .++. .++++++|+ ..++.|+|||++-+.
T Consensus 178 vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~---~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 178 LSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVR---AAIKAGAAGAISGSA 237 (267)
T ss_dssp SCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHH---HHHHTTCSEEEECHH
T ss_pred EecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 11 1 11122 36777887654322 2332 345666665 456789999999763
No 23
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=81.12 E-value=3.1 Score=35.58 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=71.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+++..+.+.|++.+-+.-+.....+.+..+... .+ +++.++.- .+.++++.+.+.. ..+|++ +
T Consensus 25 ~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~----------~~-~~~~ig~~-~v~~~~~~~~a~~--~Gad~i-v- 88 (205)
T 1wa3_A 25 KEKALAVFEGGVHLIEITFTVPDADTVIKELSFL----------KE-KGAIIGAG-TVTSVEQCRKAVE--SGAEFI-V- 88 (205)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHH----------HH-TTCEEEEE-SCCSHHHHHHHHH--HTCSEE-E-
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH----------CC-CCcEEEec-ccCCHHHHHHHHH--cCCCEE-E-
Confidence 5677888889999886643321111112222111 01 12333321 3567877655443 468888 4
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
...|. .+++...+..+..++..+.+.+|++. +++.|+|.|-+.+.++..+..++++.
T Consensus 89 ~~~~~----~~~~~~~~~~g~~vi~g~~t~~e~~~---a~~~Gad~vk~~~~~~~g~~~~~~l~ 145 (205)
T 1wa3_A 89 SPHLD----EEISQFCKEKGVFYMPGVMTPTELVK---AMKLGHTILKLFPGEVVGPQFVKAMK 145 (205)
T ss_dssp CSSCC----HHHHHHHHHHTCEEECEECSHHHHHH---HHHTTCCEEEETTHHHHHHHHHHHHH
T ss_pred cCCCC----HHHHHHHHHcCCcEECCcCCHHHHHH---HHHcCCCEEEEcCccccCHHHHHHHH
Confidence 33343 45666666667789999989998765 57999999988875444444444443
No 24
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=81.07 E-value=1.6 Score=39.98 Aligned_cols=114 Identities=8% Similarity=0.081 Sum_probs=58.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.+.|+|+++++....+...++-+. .++.|.....++.- ++.+.++.++.... +++.+
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~-------------~~~~g~~~i~l~~p~t~~~~i~~i~~~~~--g~v~~ 176 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQA-------------ALRHNIAPIFICPPNADDDLLRQVASYGR--GYTYL 176 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHH-------------HHHTTCEEECEECTTCCHHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH-------------HHHcCCcEEEEECCCCCHHHHHHHHhhCC--CcEEE
Confidence 5788899999999999986543222222111 12223322222222 34455566555432 23433
Q ss_pred e----CCC---CeeeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 D----LPD---WQVIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~----~~D---W~iIPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
. +++ -..-++..+|+.+.+. +..|+. .++++++++ .+++.|+|||++-+.
T Consensus 177 ~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~---~~~~agAD~vVVGSa 236 (268)
T 1qop_A 177 LSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVS---AAVRAGAAGAISGSA 236 (268)
T ss_dssp ESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHH---HHHHTTCSEEEECHH
T ss_pred EecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHH---HHHHcCCCEEEEChH
Confidence 2 111 1123455566665432 223333 245566555 456889999998643
No 25
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=80.44 E-value=5.2 Score=36.87 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=66.5
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeee--------hhhhhhcccC-----CCceEEEEcCCHH---HH
Q 017770 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP--------AENIVASFQG-----SGKTVFAISKTPS---EA 172 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIP--------lENliA~~q~-----~~~~l~a~v~~~~---eA 172 (366)
.+...|+...+++.++.+.. ...|.++++..| .+.| .+|+.+.++. .+..++..++..+ ..
T Consensus 8 ~rs~L~~p~~~~~~~~~a~~--~gaD~vilDlEd-av~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~VRv~~~~~~~~~ 84 (284)
T 1sgj_A 8 LRSVLFAPGNRADLIAKLPR--SAPDAVVIDLED-AVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFVRVNALHSPYFE 84 (284)
T ss_dssp CSEEEEEETTCHHHHHHTTT--TCCSEEEEESST-TSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEEECCCTTSTTHH
T ss_pred CceEEEccCCCHHHHHHHHh--CCCCEEEEECCC-CCCCchhhHHHHHHHHHHHHHhcccccCCCeEEEEeCCCCCHhHH
Confidence 34567888889988777664 468999999888 4666 6788776643 3357888888644 23
Q ss_pred HHHHHHhhcccCeEEEec-CCHHHHHHHHHhhc
Q 017770 173 QIFLEALEQGLGGIVLKV-EDVKAVLALKEYFD 204 (366)
Q Consensus 173 ~~al~~LE~G~DGVvl~~-~d~~ev~~l~~~~~ 204 (366)
.-...+|+ |.|||+|.- +++++++++.+++.
T Consensus 85 ~dl~~~l~-g~~~i~lPkv~s~~~v~~~~~~l~ 116 (284)
T 1sgj_A 85 DDLSVLTP-ELSGVVVPKLEMGAEARQVAQMLQ 116 (284)
T ss_dssp HHGGGCCT-TSSEEEECSCCSHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEeCCCCCHHHHHHHHHHHH
Confidence 34456677 999999964 56899988888774
No 26
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=80.25 E-value=4.5 Score=40.77 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=70.3
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~~------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
+.+..+.+.+.+|.|+|.+++...+. +.++++.+. .| +.++ ....|.+.++...+..
T Consensus 254 ~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~---~~------------~~~v-i~g~v~t~e~a~~~~~- 316 (511)
T 3usb_A 254 TADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAK---YP------------SLNI-IAGNVATAEATKALIE- 316 (511)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TSEE-EEEEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHh---CC------------CceE-EeeeeccHHHHHHHHH-
Confidence 55668889999999999999875442 222222211 00 1222 2336788887555544
Q ss_pred cCCCCeEEEeC-----------CCC---eeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 130 DGQAENIVIDL-----------PDW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 130 ~~~~~~vvv~~-----------~DW---~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..++.+++.. .+| ++-.+.++.+.++..+..||+ .+.+.+|+..+ |+.|+|||++-+-
T Consensus 317 -aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~ka---la~GA~~V~vGs~ 390 (511)
T 3usb_A 317 -AGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKA---LAAGAHVVMLGSM 390 (511)
T ss_dssp -HTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHH---HHTTCSEEEESTT
T ss_pred -hCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHH---HHhCchhheecHH
Confidence 3578888721 123 233334444444444567887 78899988766 5679999998764
No 27
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=80.17 E-value=2.3 Score=35.85 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=41.9
Q ss_pred EEEe-cCCceeeeeeccC---CCeEEEEcCCCCeeEEeee-eEEEeccceEEEEEEeeccCCCceee
Q 017770 283 YVLV-PGGKTCYLSELKS---GKEVIVVDQKGRQRTAVVG-RVKIESRPLILVEAKALALAGHSEPS 344 (366)
Q Consensus 283 Yv~~-PggkT~YLSEL~s---G~eVLvVd~~G~tR~a~VG-RvKIE~RPLlLIeAe~~~~~~g~~~s 344 (366)
-|.+ .+|++.-+.||.. |++|+.+|.+|+.....|= -.+...+|++.|+.+ +|+.+.
T Consensus 7 ~V~~~~~G~~~~I~el~~~~~~~~V~~~d~~g~~~~~~v~~~~~~~~~~~~~i~t~-----~G~~i~ 68 (168)
T 2imz_A 7 RIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIA-----GGAILW 68 (168)
T ss_dssp EEECTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEET-----TSCEEE
T ss_pred EEEECCCCcEEEHHHhhCccCCCEEEEECCCCCEEEEEeeeEEEcCCceEEEEEeC-----CCCEEE
Confidence 4666 7788999999988 7899999999987544433 334557888888764 465543
No 28
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=80.00 E-value=1.9 Score=43.88 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=86.3
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.+++.+..+++.|+|.|+++. ++++.++++.++ +... |+.+..+.+|.+++-++.+..-....|-
T Consensus 173 kD~~Di~~~l~~gvD~I~lsfV~saeDv~~~~~~-------------l~~~~~~~i~IiakIEt~eav~nldeI~~~sDg 239 (470)
T 1e0t_A 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREH-------------LKAHGGENIHIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHH-------------HHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSE
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHHCCE
Confidence 467889999999999999986 345555555443 2233 4457788899999988776655555777
Q ss_pred EEEeCCCCe-eeehhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCCH---
Q 017770 136 IVIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVEDV--- 193 (366)
Q Consensus 136 vvv~~~DW~-iIPlEN-------liA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d~--- 193 (366)
+++-..|-- =||+|. +|.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+..
T Consensus 240 ImVargDLgveig~e~v~~~qk~ii~~araaGkpvI~ATQMLeSMi~~p~PTRAEvsDVanAV~dG~DavMLSgETA~G~ 319 (470)
T 1e0t_A 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC-----
T ss_pred EEECchHhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEechhhHhhccCCCccHHHHhhhhHhhhcCccEEEecccccCCC
Confidence 777443332 144444 333332223333332 1344688888888889999999976643
Q ss_pred ---HHHHHHHHhhcc
Q 017770 194 ---KAVLALKEYFDG 205 (366)
Q Consensus 194 ---~ev~~l~~~~~~ 205 (366)
+.|+-+.+++.+
T Consensus 320 yPveaV~~m~~I~~~ 334 (470)
T 1e0t_A 320 YPLEAVSIMATICER 334 (470)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 466666666643
No 29
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=79.97 E-value=0.99 Score=46.30 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=86.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+..|+|.|+|.+.++. .+++.++++.++ +.+.|+.+..+.+|.+++-++.+..-....|-+
T Consensus 193 kD~~dl~~~~~~~vD~i~~sfVr~a~dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDgI 259 (499)
T 3hqn_D 193 KDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKA-------------LGPKGRDIMIICKIENHQGVQNIDSIIEESDGI 259 (499)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCcE
Confidence 578889999999999988874 234555544443 222345667888999999887766555557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW~-iIPlENl-------iA~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
+|-..|-- =||+|.+ |.+....+.-++. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 260 mVaRGDLgvEi~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLSgETA~G~y 339 (499)
T 3hqn_D 260 MVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 339 (499)
T ss_dssp EEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEeccccCCCC
Confidence 88443432 2456654 3332222223443 1245678888899999999999996543
Q ss_pred -HHHHHHHHHhhc
Q 017770 193 -VKAVLALKEYFD 204 (366)
Q Consensus 193 -~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 340 PveaV~~m~~I~~ 352 (499)
T 3hqn_D 340 PNEVVQYMARICL 352 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 356666666653
No 30
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=79.79 E-value=10 Score=34.81 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCeeEEEEEecChhhhhhhccccCCCCeEEEeCC---C----CeeeehhhhhhcccC--CCceEEEEcC-CHHHHHHHHH
Q 017770 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP---D----WQVIPAENIVASFQG--SGKTVFAISK-TPSEAQIFLE 177 (366)
Q Consensus 108 gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~---D----W~iIPlENliA~~q~--~~~~l~a~v~-~~~eA~~al~ 177 (366)
++.++. .+.+.++.+++.. ..+||+.+..- + -....+|.+-...+. .+..+++.-. +++++ -+
T Consensus 135 ~~~iG~--S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni---~~ 207 (243)
T 3o63_A 135 DTLIGR--STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRL---PA 207 (243)
T ss_dssp TCEEEE--EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTH---HH
T ss_pred CCEEEE--eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHH---HH
Confidence 555554 4678887665543 46899999431 1 113455544332222 2456777633 45544 45
Q ss_pred HhhcccCeEEE-----ecCCHH-HHHHHHHhh
Q 017770 178 ALEQGLGGIVL-----KVEDVK-AVLALKEYF 203 (366)
Q Consensus 178 ~LE~G~DGVvl-----~~~d~~-ev~~l~~~~ 203 (366)
+++.|+|||.+ ..+||. .+++|++.+
T Consensus 208 ~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 208 VLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp HHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 67899999997 456774 455555544
No 31
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=79.76 E-value=4 Score=40.98 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=71.3
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~~------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
+.+..+.+...+|.|+|.+.+...+. +.++++.+- .| +.++.. ..+.+.++...+..
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~---~p------------~~~Vi~-g~v~t~e~a~~l~~- 291 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA---YP------------HLEIIG-GNVATAEGARALIE- 291 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TCCEEE-EEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHH---CC------------CceEEE-cccCcHHHHHHHHH-
Confidence 55678999999999999999875432 222222211 00 222222 46788887665554
Q ss_pred cCCCCeEEEeCC--------------CCeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 130 DGQAENIVIDLP--------------DWQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 130 ~~~~~~vvv~~~--------------DW~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..+|.+++... .++.-.+.++..+++..+..||+ .+.+.+|+..++ +.|+|||++-+-
T Consensus 292 -aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal---a~GAd~V~iGs~ 365 (496)
T 4fxs_A 292 -AGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI---AAGASCVMVGSM 365 (496)
T ss_dssp -HTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred -hCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH---HcCCCeEEecHH
Confidence 36788887411 12222334455544444567888 689999987765 569999998765
No 32
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=79.64 E-value=12 Score=35.19 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=73.1
Q ss_pred chhHHHHHHHhCCcEEEEcCcch--hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~--~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+...+..|.+.|+|+++...... +..+++-..+ ..-|. -.++++.+.++++.+... ..+.+
T Consensus 131 d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a-------------~~lGl--~~lvevh~~eEl~~A~~~--ga~iI 193 (272)
T 3tsm_A 131 DPYQVYEARSWGADCILIIMASVDDDLAKELEDTA-------------FALGM--DALIEVHDEAEMERALKL--SSRLL 193 (272)
T ss_dssp STHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHH-------------HHTTC--EEEEEECSHHHHHHHTTS--CCSEE
T ss_pred CHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHhc--CCCEE
Confidence 45568889999999988764211 1111111110 11122 367789999998776643 56788
Q ss_pred EEeCCCCee--eehh---hhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE-----ecCCHHHHHHHHHhh
Q 017770 137 VIDLPDWQV--IPAE---NIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL-----KVEDVKAVLALKEYF 203 (366)
Q Consensus 137 vv~~~DW~i--IPlE---NliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~G~DGVvl-----~~~d~~ev~~l~~~~ 203 (366)
=++.+|-+- +.++ .|+..+. .+.-++++. .++++++.+ ++.|+|||++ +++||.+ .+++++
T Consensus 194 Ginnr~l~t~~~dl~~~~~L~~~ip-~~~~vIaesGI~t~edv~~l---~~~Ga~gvLVG~almr~~d~~~--~~~~l~ 266 (272)
T 3tsm_A 194 GVNNRNLRSFEVNLAVSERLAKMAP-SDRLLVGESGIFTHEDCLRL---EKSGIGTFLIGESLMRQHDVAA--ATRALL 266 (272)
T ss_dssp EEECBCTTTCCBCTHHHHHHHHHSC-TTSEEEEESSCCSHHHHHHH---HTTTCCEEEECHHHHTSSCHHH--HHHHHH
T ss_pred EECCCCCccCCCChHHHHHHHHhCC-CCCcEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHcCCcCHHH--HHHHHH
Confidence 777655332 2233 4555443 234566654 678888765 6899999998 5677754 344444
No 33
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=79.64 E-value=1.6 Score=45.23 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=87.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+..|+|.|+|.+.++. .+++.++++.++ +.+.|+.+..+.+|.+++-++.+..-....|-+
T Consensus 243 kD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~-------------L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgI 309 (550)
T 3gr4_A 243 KDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKV-------------LGEKGKNIKIISKIENHEGVRRFDEILEASDGI 309 (550)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEE
Confidence 578889999999999888874 234445444443 333456677888999999887766555557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW~-iIPlENl-------iA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
+|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--.+.+.--|+|+|+|..+.
T Consensus 310 mVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~y 389 (550)
T 3gr4_A 310 MVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDY 389 (550)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCC
Confidence 88443322 2455553 33322223334432 235688888899999999999996543
Q ss_pred -HHHHHHHHHhhc
Q 017770 193 -VKAVLALKEYFD 204 (366)
Q Consensus 193 -~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 390 PveaV~~M~~I~~ 402 (550)
T 3gr4_A 390 PLEAVRMQHLIAR 402 (550)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 366666666653
No 34
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=79.59 E-value=1.5 Score=45.56 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=86.5
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
.|++.+.-|++.|+|.+.++. .+++.++++.++ +...| ..+..+.+|.++|-++.+-.-....|-
T Consensus 174 kD~~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~-------------l~~~~~~~~~iiakIE~~eav~nldeIl~~~Dg 240 (587)
T 2e28_A 174 KDRADILFGIRQGIDFIAASFVRRASDVLEIREL-------------LEAHDALHIQIIAKIENEEGVANIDEILEAADG 240 (587)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHH-------------HHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSE
T ss_pred ccHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 478889999999999999885 345566555544 12223 256788899999988776655555688
Q ss_pred EEEeCCCCe-eeehh-------hhhhcccCCCceEEEEc-----------CCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAE-------NIVASFQGSGKTVFAIS-----------KTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlE-------NliA~~q~~~~~l~a~v-----------~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
+.|--.|-- =||+| .+|++....+.-++..- .+-.|+--...+.--|+|+|+|..+.
T Consensus 241 ImVargDLgvei~~~~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~ 320 (587)
T 2e28_A 241 LMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQ 320 (587)
T ss_dssp EEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEcCchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCC
Confidence 887433321 13334 45554433333344321 24468888888888999999996443
Q ss_pred -H-HHHHHHHHhhcc
Q 017770 193 -V-KAVLALKEYFDG 205 (366)
Q Consensus 193 -~-~ev~~l~~~~~~ 205 (366)
| +.|+-+.+++.+
T Consensus 321 yPveaV~~m~~I~~~ 335 (587)
T 2e28_A 321 YPVEAVKTMHQIALR 335 (587)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 556666666543
No 35
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=79.30 E-value=4.3 Score=35.98 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=53.0
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCC-CCCCeeeecCCceeEEE
Q 017770 213 LSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYI-ASRPFRVNAGPVHAYVL 285 (366)
Q Consensus 213 l~L~~atVt~V~~vGmGD-RVCVDtc-----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yv-a~RPFRVNAGaVHaYv~ 285 (366)
....+++|++++.+.-.- ++.+..- --+.||+=+.|--. ...+....||. ++-|- +.|-++=.|.
T Consensus 14 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~------~~g~~~~R~ySi~s~~~--~~~~~~l~vk 85 (275)
T 1umk_A 14 DIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR------IDGNLVVRPYTPISSDD--DKGFVDLVIK 85 (275)
T ss_dssp TCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE------ETTEEEEEEECCSSCTT--CCSEEEEEEE
T ss_pred CccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEe------eCCcEEEeccccCCccC--CCCeEEEEEE
Confidence 345688999999886432 2344321 12345543332100 01111233452 23221 3355555666
Q ss_pred ec-----------CCceeeeeeccCCCeEEEEcCCCCee
Q 017770 286 VP-----------GGKTCYLSELKSGKEVIVVDQKGRQR 313 (366)
Q Consensus 286 ~P-----------ggkT~YLSEL~sG~eVLvVd~~G~tR 313 (366)
.- |.-|+||.+|+.||+|.+-...|+..
T Consensus 86 ~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~ 124 (275)
T 1umk_A 86 VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLV 124 (275)
T ss_dssp CCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEE
T ss_pred EeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceE
Confidence 53 66799999999999999988888753
No 36
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=79.21 E-value=7.2 Score=38.99 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=70.9
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~vv~~~~~------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
+.+..+.+..++|.|+|.+.+...+. +.++++.+. .| +.++. ...+.+.++...+..
T Consensus 227 ~~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~---~p------------~~~Vi-~g~v~t~e~a~~l~~- 289 (490)
T 4avf_A 227 GADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQT---FP------------DVQVI-GGNIATAEAAKALAE- 289 (490)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHH---CT------------TSEEE-EEEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHH---CC------------CceEE-EeeeCcHHHHHHHHH-
Confidence 34568899999999999998864321 222222221 00 22222 235788887655544
Q ss_pred cCCCCeEEEeCC-----------CCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 130 DGQAENIVIDLP-----------DWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 130 ~~~~~~vvv~~~-----------DW~---iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..+|.+++-.. +|. +--+.++..++...+..||+ .+.+.+|+..++ +.|+|+|++-+-
T Consensus 290 -aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal---~~GAd~V~vGs~ 363 (490)
T 4avf_A 290 -AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAM---VAGAYCVMMGSM 363 (490)
T ss_dssp -TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH---HHTCSEEEECTT
T ss_pred -cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHH---HcCCCeeeecHH
Confidence 46889988321 222 22234455444444567898 789999988776 459999999765
No 37
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=78.76 E-value=3.1 Score=39.82 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=35.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..++.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+
T Consensus 198 ~~~IeVEv~tl~ea~eA---l~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 198 NKVVEVEVTNLDELNQA---IAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp TSCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHH---HHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 46899999999998765 5679999999999999998877766
No 38
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=78.72 E-value=1.7 Score=39.76 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=56.7
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE-
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv- 137 (366)
.+.+..|.+.|+|+++++.-..+...++.+.. ++.|..+..++.- ++.+.++.++......-|.+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~-------------~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs 178 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVM-------------KKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVS 178 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH-------------HHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 56778899999999999864333333332221 1122221122222 34455666665543322222
Q ss_pred ---EeCCCCeee---ehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 138 ---IDLPDWQVI---PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 138 ---v~~~DW~iI---PlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.+.. +-. ++.++++.+.+. +..|+. .+++++.++. +..|+|||++-+
T Consensus 179 ~~g~TG~~-~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~----~~~gADgvIVGS 235 (262)
T 2ekc_A 179 VTGTTGAR-EKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE----IGSFADGVVVGS 235 (262)
T ss_dssp SCC----------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH----HHTTSSEEEECH
T ss_pred cCCccCCC-CCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH----HHcCCCEEEECH
Confidence 11111 122 255677766432 223433 3566776655 577899999854
No 39
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=78.64 E-value=2 Score=40.26 Aligned_cols=114 Identities=9% Similarity=0.120 Sum_probs=59.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv 138 (366)
...+..|.|.|+|+++++.-..+...++... .++.|.....++.-+ +.|.++.++... .+++-+
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~ 179 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAA-------------AEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL 179 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE
Confidence 5678999999999999875322222222222 122233322333333 345555665543 233332
Q ss_pred ------eCCCCee-eehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 ------DLPDWQV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ------~~~DW~i-IPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+..-++ -+++.+++.+... +..++. .++++++|+ ..++.|+|||++-+.
T Consensus 180 vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~---~~~~~gADgvIVGSA 239 (271)
T 3nav_A 180 LSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVK---QAIEAGAAGAISGSA 239 (271)
T ss_dssp CCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHH---HHHHTTCSEEEESHH
T ss_pred EeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHH---HHHHcCCCEEEECHH
Confidence 1222111 2356677765432 223332 466777775 356789999998663
No 40
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=78.23 E-value=10 Score=34.85 Aligned_cols=122 Identities=19% Similarity=0.098 Sum_probs=76.2
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
+-.++..+.++.|++.+=++-.+.+-.+.+..+..--| +..+|+ ..|.+.++.+.+.. ..+++++
T Consensus 26 ~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p------------~~~IGA-GTVlt~~~a~~ai~--AGA~fiv 90 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVP------------EAIVGA-GTVCTADDFQKAID--AGAQFIV 90 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCT------------TSEEEE-ECCCSHHHHHHHHH--HTCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC------------CCeEee-ccccCHHHHHHHHH--cCCCEEE
Confidence 35778899999999998887432211122222211001 122333 46788998777665 3678888
Q ss_pred EeCCCCeeeehhhhhhcccCCCc------eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH----HHHHHHHHhh
Q 017770 138 IDLPDWQVIPAENIVASFQGSGK------TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV----KAVLALKEYF 203 (366)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~------~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~----~ev~~l~~~~ 203 (366)
.-..+.++| ...+..+. -++..+.+++|+..+ +|.|+|.|=+-|... +-+++++..+
T Consensus 91 sP~~~~evi------~~~~~~~v~~~~~~~~~PG~~TptE~~~A---~~~Gad~vK~FPa~~~gG~~~lkal~~p~ 157 (217)
T 3lab_A 91 SPGLTPELI------EKAKQVKLDGQWQGVFLPGVATASEVMIA---AQAGITQLKCFPASAIGGAKLLKAWSGPF 157 (217)
T ss_dssp ESSCCHHHH------HHHHHHHHHCSCCCEEEEEECSHHHHHHH---HHTTCCEEEETTTTTTTHHHHHHHHHTTC
T ss_pred eCCCcHHHH------HHHHHcCCCccCCCeEeCCCCCHHHHHHH---HHcCCCEEEECccccccCHHHHHHHHhhh
Confidence 766554444 33333344 799999999998765 899999999998763 4444444433
No 41
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=78.12 E-value=3.1 Score=42.87 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=89.1
Q ss_pred hHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
+.+.-|+|-|+|.|-+.. .+++.+.++.++ .-+.|....+.+..+..+-+|.+++-++.+..-....|-++|.
T Consensus 220 D~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~------l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~sDgIMVA 293 (526)
T 4drs_A 220 DIVDFALKYNLDFIALSFVQNGADVQLCRQI------ISENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIMVA 293 (526)
T ss_dssp HHHHTTTTTTCSEEEETTCCSHHHHHHHHHH------HHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHHSSEEEEE
T ss_pred HHHHHHHHhccCeeeecccCchhhHHHHHHH------HHhhCcccccccccceeeeehhccHHHHHHHHHHhhccEEEEE
Confidence 457889999999766653 234555555544 1122222222234567888999999998887777778999997
Q ss_pred CCCCee-eehhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----H-H
Q 017770 140 LPDWQV-IPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED-----V-K 194 (366)
Q Consensus 140 ~~DW~i-IPlEN-------liA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d-----~-~ 194 (366)
-.|--+ ||+|. ||......+.-+|.. ..+-.|+--...+..-|+|+|+|..+. | +
T Consensus 294 RGDLgvEip~e~vp~~QK~II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve 373 (526)
T 4drs_A 294 RGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD 373 (526)
T ss_dssp CTTHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence 666443 55554 444433333345543 345578888999999999999998432 3 5
Q ss_pred HHHHHHHhhc
Q 017770 195 AVLALKEYFD 204 (366)
Q Consensus 195 ev~~l~~~~~ 204 (366)
.|+-+.+++.
T Consensus 374 aV~~m~~I~~ 383 (526)
T 4drs_A 374 AVNVMSRVCA 383 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 42
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=78.06 E-value=3.3 Score=39.97 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=36.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..+|.|.+|++.++ +.|+|.|+|+.=+++++++..+.+
T Consensus 207 ~~kIeVEv~tl~e~~eAl---~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 207 NEYIAIECDNISQVEESL---SNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp SCCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHhh
Confidence 468999999999988655 569999999999999998877766
No 43
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=78.02 E-value=7.5 Score=34.81 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=62.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..++. ..+.+.++.+.+.. ..+++++.-
T Consensus 31 ~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~vga-gtvi~~d~~~~A~~--aGAd~v~~p 95 (214)
T 1wbh_A 31 VPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKE----------VP--EAIVGA-GTVLNPQQLAEVTE--AGAQFAISP 95 (214)
T ss_dssp HHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHH----------CT--TSEEEE-ESCCSHHHHHHHHH--HTCSCEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH----------Cc--CCEEee-CEEEEHHHHHHHHH--cCCCEEEcC
Confidence 5689999999999988875432111111112110 00 112222 23567777665544 357888874
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..| .|+...-. ..+..++..+.|++|++.+ ++.|+|-|-+-|..
T Consensus 96 ~~d---~~v~~~~~---~~g~~~i~G~~t~~e~~~A---~~~Gad~v~~Fpa~ 139 (214)
T 1wbh_A 96 GLT---EPLLKAAT---EGTIPLIPGISTVSELMLG---MDYGLKEFKFFPAE 139 (214)
T ss_dssp SCC---HHHHHHHH---HSSSCEEEEESSHHHHHHH---HHTTCCEEEETTTT
T ss_pred CCC---HHHHHHHH---HhCCCEEEecCCHHHHHHH---HHCCCCEEEEecCc
Confidence 433 22322222 2334556569999998654 68999999888843
No 44
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=77.45 E-value=20 Score=27.79 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=47.6
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++...... +......+++.|+++++.+|-++
T Consensus 51 ~~~~~~~al~~l~~-~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~Kp~~~ 127 (150)
T 4e7p_A 51 QAKNGQEAIQLLEK-ESVDIAILDVEMPV-KTGLEVLEWIRSEKLETKVVVVTTFK-RAGYFERAVKAGVDAYVLKERSI 127 (150)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTSCH
T ss_pred EECCHHHHHHHhhc-cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEeCCC-CHHHHHHHHHCCCcEEEecCCCH
Confidence 44566554333322 34677887543222 22223333332 2345666665544 44556778999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 128 ~~l~~~ 133 (150)
T 4e7p_A 128 ADLMQT 133 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 45
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=77.30 E-value=7 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=30.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~~ 194 (366)
+..|++-+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 166 ~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DLs 202 (287)
T 2v5j_A 166 QMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLS 202 (287)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHH
T ss_pred CcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHHH
Confidence 35799999999999999999975 9999999887653
No 46
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=77.28 E-value=7.2 Score=35.29 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=62.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..+++ ..+.++++.+.+.. ..+++++.
T Consensus 31 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~l~vga-Gtvl~~d~~~~A~~--aGAd~v~~ 95 (224)
T 1vhc_A 31 ILPLADTLAKNGLSVAEITFRSEAAADAIRLLRAN----------RP--DFLIAA-GTVLTAEQVVLAKS--SGADFVVT 95 (224)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH----------CT--TCEEEE-ESCCSHHHHHHHHH--HTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHh----------Cc--CcEEee-CcEeeHHHHHHHHH--CCCCEEEE
Confidence 35789999999999888875332212222212110 00 122222 23456776555444 35788876
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
-..| .| ++......+..++..+.|++|++. +++.|+|-|-+-|..
T Consensus 96 p~~d---~~---v~~~ar~~g~~~i~Gv~t~~e~~~---A~~~Gad~vk~Fpa~ 140 (224)
T 1vhc_A 96 PGLN---PK---IVKLCQDLNFPITPGVNNPMAIEI---ALEMGISAVKFFPAE 140 (224)
T ss_dssp SSCC---HH---HHHHHHHTTCCEECEECSHHHHHH---HHHTTCCEEEETTTT
T ss_pred CCCC---HH---HHHHHHHhCCCEEeccCCHHHHHH---HHHCCCCEEEEeeCc
Confidence 4444 22 222222234445556899999865 568999999988843
No 47
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=77.02 E-value=9.1 Score=35.18 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=30.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~~ 194 (366)
+..|++-+.+++-...+-+++.. |+||+.+-+.|..
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL~ 181 (267)
T 2vws_A 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLS 181 (267)
T ss_dssp HCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHHH
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHHH
Confidence 35799999999999888888875 8999999887653
No 48
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=77.00 E-value=6.7 Score=38.80 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred hhHHHHHHHhCCcEEEEcCc--c----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 017770 60 KQVMTAAVERGWNTFVFLSE--N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~--~----~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (366)
.+.+.+++|.|+|.|+++.. + .+.++++.+- -+.++. ...+.+.++.+.+.. ..+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~----------------~~i~Vi-~g~V~t~e~A~~a~~--aGA 206 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK----------------MNIDVI-VGNVVTEEATKELIE--NGA 206 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT----------------CCCEEE-EEEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc----------------CCCeEE-EeecCCHHHHHHHHH--cCC
Confidence 78999999999999887432 1 1222222211 022221 126788887665543 468
Q ss_pred CeEEEeC--------C---CCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 134 ENIVIDL--------P---DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 134 ~~vvv~~--------~---DW~iIP----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
|.|++.. + +|. .| +.++...++..+..||+ .+.+.+++..+ |+.|+|||.+-+.
T Consensus 207 D~I~vG~g~Gs~~~tr~~~g~g-~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~ka---lalGAd~V~vGt~ 277 (400)
T 3ffs_A 207 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKA---LAVGASSVMIGSI 277 (400)
T ss_dssp SEEEECC---------CCSCBC-CCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHH---HTTTCSEEEECGG
T ss_pred CEEEEeCCCCcCcccccccccc-hhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 8888821 1 121 34 33444444444567888 57888887665 4679999998765
No 49
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=76.78 E-value=0.52 Score=48.22 Aligned_cols=135 Identities=17% Similarity=0.218 Sum_probs=82.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
++++.+..|++.|+|.|++|. ++++.++++.++ +...|..+..+.+|.+++-++.+..-....|-+
T Consensus 194 ~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~-------------l~~~~~~i~IiakIEt~eav~nldeI~~~~DgI 260 (500)
T 1a3w_A 194 KDKEDLRFGVKNGVHMVFASFIRTANDVLTIREV-------------LGEQGKDVKIIVKIENQQGVNNFDEILKVTDGV 260 (500)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHH-------------HHHHHTTSEEEEEECSSHHHHSHHHHHHHSSEE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCcEEEEEECChHHHHhHHHHHHhCCEE
Confidence 468889999999999999986 345555554433 111233466788999988877655544346777
Q ss_pred EEeCCCCe-eeehhh-------hhhcccCCCceEEE---------EcCCH--HHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDWQ-VIPAEN-------IVASFQGSGKTVFA---------ISKTP--SEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW~-iIPlEN-------liA~~q~~~~~l~a---------~v~~~--~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
++-..|-- =||.|. +|.+....+.-++. ...++ .|+--+..+...|+|.|+|..+.
T Consensus 261 mvgrgDLgvelg~~~v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~y 340 (500)
T 1a3w_A 261 MVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNY 340 (500)
T ss_dssp EECHHHHHHHTTGGGHHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSC
T ss_pred EECchHhhhhcCcHHHHHHHHHHHHHHHhcCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchh
Confidence 76322211 123333 44333322333442 22333 45667788889999999997774
Q ss_pred -HHHHHHHHHhhcc
Q 017770 193 -VKAVLALKEYFDG 205 (366)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (366)
.+.|+-+.+++.+
T Consensus 341 PveaV~~m~~I~~~ 354 (500)
T 1a3w_A 341 PINAVTTMAETAVI 354 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2466666666643
No 50
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=76.70 E-value=14 Score=28.15 Aligned_cols=82 Identities=10% Similarity=0.102 Sum_probs=47.9
Q ss_pred EecChhhhhhhccc-cCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 116 EVSTPQELQQLQPA-DGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~-~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
...+.++....... ....+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~ 109 (143)
T 3jte_A 32 TASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPHMAVIILTGH-GDLDNAILAMKEGAFEYLRKPVT 109 (143)
T ss_dssp EESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEEECT-TCHHHHHHHHHTTCSEEEESSCC
T ss_pred EeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEECC-CCHHHHHHHHHhCcceeEeCCCC
Confidence 44565554333322 245778888554222 11222333332 234566655544 34556678899999999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 110 ~~~l~~~ 116 (143)
T 3jte_A 110 AQDLSIA 116 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 51
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=76.63 E-value=8.3 Score=32.72 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=60.6
Q ss_pred hHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
+.+..|++.|+|.+.++..+ .+.++++. .+.. ..+.+.++++...+. ....+++++
T Consensus 77 ~~~~~a~~~gad~v~l~~~~~~~~~~~~~~------------------~~~~--~~v~~~t~~e~~~~~--~~g~d~i~~ 134 (215)
T 1xi3_A 77 DRVDVALAVDADGVQLGPEDMPIEVAKEIA------------------PNLI--IGASVYSLEEALEAE--KKGADYLGA 134 (215)
T ss_dssp SCHHHHHHHTCSEEEECTTSCCHHHHHHHC------------------TTSE--EEEEESSHHHHHHHH--HHTCSEEEE
T ss_pred ChHHHHHHcCCCEEEECCccCCHHHHHHhC------------------CCCE--EEEecCCHHHHHHHH--hcCCCEEEE
Confidence 34567888899988886432 22232221 1222 223567877755433 235899988
Q ss_pred eC------------CCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec-----CCH-HHHHH
Q 017770 139 DL------------PDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLA 198 (366)
Q Consensus 139 ~~------------~DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~-----~d~-~ev~~ 198 (366)
.. .+|+.| +.+...+ +..+++. ++ +++++. +++.|+|||.+-+ +|+ +.+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~l--~~l~~~~---~~pvia~GGI~-~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~ 205 (215)
T 1xi3_A 135 GSVFPTKTKEDARVIGLEGL--RKIVESV---KIPVVAIGGIN-KDNARE---VLKTGVDGIAVISAVMGAEDVRKATEE 205 (215)
T ss_dssp ECSSCC----CCCCCHHHHH--HHHHHHC---SSCEEEESSCC-TTTHHH---HHTTTCSEEEESHHHHTSSSHHHHHHH
T ss_pred cCCccCCCCCCCCCcCHHHH--HHHHHhC---CCCEEEECCcC-HHHHHH---HHHcCCCEEEEhHHHhCCCCHHHHHHH
Confidence 43 123322 2232222 3345543 34 565554 4678999998764 566 36666
Q ss_pred HHHhh
Q 017770 199 LKEYF 203 (366)
Q Consensus 199 l~~~~ 203 (366)
+++.+
T Consensus 206 ~~~~~ 210 (215)
T 1xi3_A 206 LRKIV 210 (215)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 52
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=76.58 E-value=9 Score=29.06 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=47.9
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++....... ...+.+|++..-.. ..--.++..+.. ....++..... .+......+++.|+++++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~kP~~~ 112 (137)
T 3hdg_A 36 SAGDGEEGERLFGL-HAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVIVISAF-SEMKYFIKAIELGVHLFLPKPIEP 112 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEEECCCC-CCHHHHHHHHHHCCSEECCSSCCH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEecC-cChHHHHHHHhCCcceeEcCCCCH
Confidence 34566554333322 35677888543221 122233333332 23455555444 445567788999999999999999
Q ss_pred HHHHHHHH
Q 017770 194 KAVLALKE 201 (366)
Q Consensus 194 ~ev~~l~~ 201 (366)
+++.+.-+
T Consensus 113 ~~l~~~i~ 120 (137)
T 3hdg_A 113 GRLMETLE 120 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765433
No 53
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=75.84 E-value=6.7 Score=36.46 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=65.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc--ch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec----Ch---hhhhhhc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE--NQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS----TP---QELQQLQ 127 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~--~~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~----~~---ed~e~~~ 127 (366)
.+.+++.++.+.|.-+++.... +. +..+.+.++.... ++++++-+-+. .+ +.++.+.
T Consensus 27 s~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~-------------~~p~~v~l~v~~~~~~~~~~~~~~~~~ 93 (328)
T 2gjl_A 27 GRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELT-------------DRPFGVNLTLLPTQKPVPYAEYRAAII 93 (328)
T ss_dssp CSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHC-------------SSCCEEEEEECCCSSCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhc-------------CCCeEEEEeccccccCccHHHHHHHHH
Confidence 4578999999999988886531 11 2222222221110 11122222222 12 2222222
Q ss_pred cccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 128 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 128 ~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
. .+.+.+.+.+.+ | ..++..++..+..++..+.+.++|+. +.+.|+|+|++..
T Consensus 94 -~-~g~d~V~~~~g~----p-~~~~~~l~~~gi~vi~~v~t~~~a~~---~~~~GaD~i~v~g 146 (328)
T 2gjl_A 94 -E-AGIRVVETAGND----P-GEHIAEFRRHGVKVIHKCTAVRHALK---AERLGVDAVSIDG 146 (328)
T ss_dssp -H-TTCCEEEEEESC----C-HHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEEC
T ss_pred -h-cCCCEEEEcCCC----c-HHHHHHHHHcCCCEEeeCCCHHHHHH---HHHcCCCEEEEEC
Confidence 2 357888887765 4 46677776667789999999999875 5678999999954
No 54
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=75.60 E-value=7.3 Score=35.92 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~---~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
-.+++.++++.|++.+=++-.+. +..+++.+- + | +-.++ ...|.+.++.+.+... .+++
T Consensus 48 a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~--~-~------------~~~iG-aGTVlt~~~a~~Ai~A--GA~f 109 (232)
T 4e38_A 48 IIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQA--Q-P------------EMLIG-AGTILNGEQALAAKEA--GATF 109 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH--C-T------------TCEEE-EECCCSHHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh--C-C------------CCEEe-ECCcCCHHHHHHHHHc--CCCE
Confidence 46778889999999888764322 222222221 0 1 11222 2346788887776653 6788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
++.-..| +.++...+..+..++..+.|++|+..+ ++.|+|-|=+-|-..
T Consensus 110 IvsP~~~------~~vi~~~~~~gi~~ipGv~TptEi~~A---~~~Gad~vK~FPa~~ 158 (232)
T 4e38_A 110 VVSPGFN------PNTVRACQEIGIDIVPGVNNPSTVEAA---LEMGLTTLKFFPAEA 158 (232)
T ss_dssp EECSSCC------HHHHHHHHHHTCEEECEECSHHHHHHH---HHTTCCEEEECSTTT
T ss_pred EEeCCCC------HHHHHHHHHcCCCEEcCCCCHHHHHHH---HHcCCCEEEECcCcc
Confidence 8764433 334444444566788999999998776 789999999988643
No 55
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=75.50 E-value=4.8 Score=38.19 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=36.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.+|..+|.|.+||+.+ ++.|+|.|+|++-+++++++..+.+.
T Consensus 194 ~~I~VEV~tleea~eA---~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 194 TKIEVEVENLEDALRA---VEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp SCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 5799999999998876 56799999999999999988777663
No 56
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=74.99 E-value=1.9 Score=40.77 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhccc-------c-cccceeeeeEEEEEEEEEcCCcce
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGR-------N-EVSNLLSLMKATVTRVDVAGMGDR 231 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~-------~-~~~~~l~L~~atVt~V~~vGmGDR 231 (366)
.++...+.+++|++.++ +.|+|+|.|++-++++++++++.+... + ..++.+ +..+|.++...|. |+
T Consensus 200 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI--t~~ni~~~~~~Gv-D~ 273 (294)
T 3c2e_A 200 VKIEVECLSEDEATEAI---EAGADVIMLDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGL--NLDNLEEYLCDDI-DI 273 (294)
T ss_dssp SCEEEECSSSHHHHHHH---HHTCSEEECCC---------------------CCEEEEECCC--CC------CCCSC-SE
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhcccccCCCCeEEEEECCC--CHHHHHHHHHcCC-CE
Confidence 57999999999987665 579999999999999888776655321 0 122333 4556666666665 55
Q ss_pred EEE
Q 017770 232 VCV 234 (366)
Q Consensus 232 VCV 234 (366)
+.|
T Consensus 274 i~v 276 (294)
T 3c2e_A 274 YST 276 (294)
T ss_dssp EEC
T ss_pred EEE
Confidence 544
No 57
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=74.29 E-value=3.3 Score=39.86 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=34.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
..+|..+|.|.+|++.+ ++.|+|+|+|+.-+++++++..+.+
T Consensus 209 ~~~ieVEvdtlde~~eA---l~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 209 EVPVQIEVETLDQLRTA---LAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp -CCCEEEESSHHHHHHH---HHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35789999999987665 5579999999999999998877655
No 58
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=74.17 E-value=13 Score=34.48 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..++|.|+|.+.+.-++ .+..+.+.+ .|.++ +..+.+.++...+.. ..+|.+++
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~~-----------------~gi~v--i~~v~t~~~a~~~~~--~GaD~i~v 144 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGNDPGEHIAEFRR-----------------HGVKV--IHKCTAVRHALKAER--LGVDAVSI 144 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESCCHHHHHHHHH-----------------TTCEE--EEEESSHHHHHHHHH--TTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCcHHHHHHHHH-----------------cCCCE--EeeCCCHHHHHHHHH--cCCCEEEE
Confidence 578999999999998876432 223322221 13332 245677776544332 45889998
Q ss_pred eCCC------CeeeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 139 DLPD------WQVIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 139 ~~~D------W~iIPlENliA~~q~~-~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
.... ...+|.-.++.++... +..|++. +.+.+++..++ +.|+|||.+-+
T Consensus 145 ~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al---~~GAdgV~vGs 202 (328)
T 2gjl_A 145 DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL---ALGADAINMGT 202 (328)
T ss_dssp ECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH---HHTCSEEEESH
T ss_pred ECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH---HcCCCEEEECH
Confidence 6531 1123444555554322 3345543 56667665554 46999999864
No 59
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=73.98 E-value=15 Score=27.87 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-+++++.+.
T Consensus 59 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 59 HPKLILLDINIPK-MNGIEFLKELRDDSSFTDIEVFVLTAAY-TSKDKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp CCSEEEEETTCTT-SCHHHHHHHHTTSGGGTTCEEEEEESCC-CHHHHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHcCccccCCcEEEEeCCC-CHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 4677777654222 222244444443 245666665543 35567788999999999999999987654
No 60
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=73.82 E-value=1.7 Score=44.70 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=85.1
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+|++-+ ..|+|.|+|.|.++. .+++.+.++.++ +.+.|..+..+.+|.+++-++.+..-....|-
T Consensus 208 kD~~Dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~~~iiaKIE~~eav~nldeIl~~sDg 274 (511)
T 3gg8_A 208 KDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGL-------------LGPRGRHIRIIPKIENVEGLVNFDEILAEADG 274 (511)
T ss_dssp HHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHHH-------------HTGGGTTCEEEEEECSHHHHHTHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCe
Confidence 467767 999999999887764 234455544443 22334456788899999988776655555688
Q ss_pred EEEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlENl-------iA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 275 imVaRGDLgvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~dGaDavMLSgETA~G~ 354 (511)
T 3gg8_A 275 IMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGE 354 (511)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEecchhcCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 888433322 1466654 33332333334431 235578888899999999999996443
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 355 yPveaV~~M~~I~~ 368 (511)
T 3gg8_A 355 FPVITVETMARICY 368 (511)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 61
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=73.81 E-value=4.5 Score=38.49 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=35.5
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
++..++.+++|++.+ ++.|+|+|.|++-++++++++++.+
T Consensus 210 kI~vev~tlee~~eA---~~aGaD~I~ld~~~~e~l~~~v~~~ 249 (296)
T 1qap_A 210 PVEVEVENLDELDDA---LKAGADIIMLDNFNTDQMREAVKRV 249 (296)
T ss_dssp CEEEEESSHHHHHHH---HHTTCSEEEESSCCHHHHHHHHHTT
T ss_pred cEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 899999999998776 5779999999999999998887766
No 62
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=73.76 E-value=3.7 Score=38.19 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=58.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE-
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv- 137 (366)
...+..|.|.|+|+++++.-..+...++... +++.|.....++.- ++.+.++.++.......|++
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~-------------~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs 175 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRL-------------AQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVS 175 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHH-------------HHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHH-------------HHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 5667889999999999885322222222111 01111111111111 34556666665544444443
Q ss_pred ---EeCCCCe-eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ---IDLPDWQ-VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 ---v~~~DW~-iIPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+.+.+-. --|++.+++++.+. +..|++ .++++++|+.+ .|+|||++-+.
T Consensus 176 ~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-----~~ADgVIVGSA 231 (271)
T 1ujp_A 176 VTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-----AVADGVVVGSA 231 (271)
T ss_dssp C------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-----TTSSEEEECHH
T ss_pred cCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-----cCCCEEEEChH
Confidence 2222211 23556677666543 334544 36788888873 89999999764
No 63
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=73.67 E-value=21 Score=27.36 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+... ...++...... +...+..+++.|+++++.+|-+++++.+.
T Consensus 48 ~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 114 (136)
T 2qzj_A 48 KYDLIFLEIILSD-GDGWTLCKKIRNVTTCPIVYMTYIN-EDQSILNALNSGGDDYLIKPLNLEILYAK 114 (136)
T ss_dssp CCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEEEESCC-CHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHccCCCCCEEEEEcCC-CHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 4577777432111 1122344444322 34555554433 34556788999999999999999887653
No 64
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=73.16 E-value=8.2 Score=35.93 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.8
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.++...+.+++|++.++ +.|+|+|.+++-++++++++++.+.
T Consensus 183 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 183 AKIEIECESFEEAKNAM---NAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp CCEEEEESSHHHHHHHH---HHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 47999999999987665 5799999999999999988777653
No 65
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=72.87 E-value=1.9 Score=44.41 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=85.3
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 017770 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (366)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (366)
+|++.+ .-|+|.|+|.|.++. .+++.+.++.++ +.+.|+.+..+.+|.+++-++.+..-....|-
T Consensus 217 kD~~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~g~~i~IIAKIE~~eav~nldeIl~~sDG 283 (520)
T 3khd_A 217 KDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNL-------------LGPRGRHIKIIPKIENIEGIIHFDKILAESDG 283 (520)
T ss_dssp HHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCcEEEEECCHHHHHhHHHHHHhCCc
Confidence 467767 999999999887764 234444444443 33345567788899999988776655545677
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 017770 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (366)
Q Consensus 136 vvv~~~DW~-iIPlENli-------A~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (366)
++|-..|-- =||+|.+- .+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 284 IMVARGDLgvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVldGaDavMLSgETA~G~ 363 (520)
T 3khd_A 284 IMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGK 363 (520)
T ss_dssp EEECHHHHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCS
T ss_pred EEEccccccccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCc
Confidence 887333321 14666643 3222222234421 235688888899999999999996442
Q ss_pred --HHHHHHHHHhhc
Q 017770 193 --VKAVLALKEYFD 204 (366)
Q Consensus 193 --~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 364 yPveaV~~M~~I~~ 377 (520)
T 3khd_A 364 FPVEAVTIMSKICL 377 (520)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 66
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=72.59 E-value=2.7 Score=40.56 Aligned_cols=140 Identities=14% Similarity=0.234 Sum_probs=81.9
Q ss_pred cEEEEEeC--chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecC--------C-----------ccccCCC
Q 017770 51 KRVWIWTE--SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE--------G-----------EVYDSGD 108 (366)
Q Consensus 51 K~vWiw~~--~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~--------g-----------~~~~~~g 108 (366)
+.+||-.- +...+..+|+.|+++|++|. ++.+.++++.+..+..|+-..+ | +.+...+
T Consensus 96 ~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~ 175 (339)
T 1izc_A 96 SLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSN 175 (339)
T ss_dssp SEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcC
Confidence 56888662 56788999999999999996 3455555554442222211110 0 0000002
Q ss_pred CeeEEEEEecChhhhhhhcccc--CCCCeEEEeCCCCee---------e-----e-----hhhhhhcccCCCceEEEEcC
Q 017770 109 RRVGSIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQV---------I-----P-----AENIVASFQGSGKTVFAISK 167 (366)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~i---------I-----P-----lENliA~~q~~~~~l~a~v~ 167 (366)
..+.+++.|.+++-++.+.... ...+.+.+-..|-.. + | ++.++.+....+..+.....
T Consensus 176 ~~i~vi~mIEt~~av~nldeIaa~~~vD~l~iG~~DLs~~~~~~~~~~lG~~~~p~v~~a~~~iv~aaraaGk~~g~~~~ 255 (339)
T 1izc_A 176 NHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIFGGAL 255 (339)
T ss_dssp HHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCceEEEEEChHHHHHHHHHHhcCCCCCEEEECHHHHHhhhhcccchhhCCCCCHHHHHHHHHHHHHHHHhCCceeEecC
Confidence 3456788899988776654433 247777763322211 1 1 24454444444445666778
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 168 TPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
|+++++. .++.|.+++++.+ |..
T Consensus 256 d~~~a~~---~~~~Gf~~l~~~~-di~ 278 (339)
T 1izc_A 256 SVDMVPS---LIEQGYRAIAVQF-DVW 278 (339)
T ss_dssp SGGGHHH---HHHTTEEEEEEEE-HHH
T ss_pred CHHHHHH---HHHhCCCEEEecH-HHH
Confidence 8877765 5689999988877 443
No 67
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=72.50 E-value=11 Score=36.63 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred CchhHHHHHHHhCCcEEEEcCc--c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLSE--N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~--~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+..+.+..++|.|+|.|+++.. + ....+.+..+....| +.++ ....+.++++.+.+.. ..+|
T Consensus 108 ~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p------------~v~V-i~G~v~t~e~A~~a~~--aGAD 172 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP------------HLEI-IGGNVATAEGARALIE--AGVS 172 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT------------TCEE-EEEEECSHHHHHHHHH--HTCS
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcC------------CCce-EeeeeCCHHHHHHHHH--cCCC
Confidence 4578899999999999887432 1 111121222211000 2221 1236788888666554 3689
Q ss_pred eEEEe---C--------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 135 NIVID---L--------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 135 ~vvv~---~--------~DW~iIP----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
++++- + .+|- +| +.++.+.++..+..|++ .+.+..++.. +|..|+|||.+-+.
T Consensus 173 ~I~vG~gpGs~~~tr~~~g~g-~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~k---ala~GAd~V~vGs~ 242 (366)
T 4fo4_A 173 AVKVGIGPGSICTTRIVTGVG-VPQITAIADAAGVANEYGIPVIADGGIRFSGDISK---AIAAGASCVMVGSM 242 (366)
T ss_dssp EEEECSSCSTTBCHHHHHCCC-CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH---HHHTTCSEEEESTT
T ss_pred EEEEecCCCCCCCcccccCcc-cchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH---HHHcCCCEEEEChH
Confidence 99982 0 0222 23 22333322333567888 7888888654 55679999998776
No 68
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=72.14 E-value=5.1 Score=37.08 Aligned_cols=59 Identities=10% Similarity=0.282 Sum_probs=38.0
Q ss_pred CCCCCeeeec----CCceeEEEe-------------cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe----cc
Q 017770 268 IASRPFRVNA----GPVHAYVLV-------------PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE----SR 325 (366)
Q Consensus 268 va~RPFRVNA----GaVHaYv~~-------------Pgg-kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE----~R 325 (366)
.-.|||-+-- +.++=+|.. |+| -|+||+.|+.||+|.+-...|+.. ..-+ .+
T Consensus 98 ~~~R~ySIaS~p~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~------l~~~~~~~~~ 171 (316)
T 3jqq_A 98 RCARLYSISSSNNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFN------LPNDAIQKNT 171 (316)
T ss_dssp CCCEEEEBCSCTTSSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCC------CCTTHHHHTC
T ss_pred ccceeeecccCCCCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceE------cCCcccCCCC
Confidence 3456666533 455555654 334 588999999999999866666531 1111 58
Q ss_pred ceEEEEE
Q 017770 326 PLILVEA 332 (366)
Q Consensus 326 PLlLIeA 332 (366)
|++||=+
T Consensus 172 ~vvlIAg 178 (316)
T 3jqq_A 172 NFIFIAT 178 (316)
T ss_dssp CEEEEEE
T ss_pred cEEEEeC
Confidence 9998854
No 69
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=71.92 E-value=17 Score=31.12 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe--
Q 017770 62 VMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID-- 139 (366)
Q Consensus 62 ~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~-- 139 (366)
.+..|++.|+|.+.++..+.+ ..++.+. + |. ...-+.+.++++...+.. ...+++++.
T Consensus 86 ~~~~a~~~gad~v~l~~~~~~-~~~~~~~-------------~---g~-~~~~~s~~t~~e~~~a~~--~g~d~v~~~~v 145 (227)
T 2tps_A 86 DVELALNLKADGIHIGQEDAN-AKEVRAA-------------I---GD-MILGVSAHTMSEVKQAEE--DGADYVGLGPI 145 (227)
T ss_dssp CHHHHHHHTCSEEEECTTSSC-HHHHHHH-------------H---TT-SEEEEEECSHHHHHHHHH--HTCSEEEECCS
T ss_pred HHHHHHHcCCCEEEECCCccC-HHHHHHh-------------c---CC-cEEEEecCCHHHHHHHHh--CCCCEEEECCC
Confidence 356788889998888654321 1111110 0 11 111223467776544332 357888861
Q ss_pred C-----------CCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec-----CCH-HHHHHHH
Q 017770 140 L-----------PDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLALK 200 (366)
Q Consensus 140 ~-----------~DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~-----~d~-~ev~~l~ 200 (366)
+ .+|..+ ..+...+ . +..+++. ++ ++.++. +++.|+|||.+-+ +|+ +.+++++
T Consensus 146 ~~t~~~~~~~~~~~~~~l--~~~~~~~-~-~~pvia~GGI~-~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~ 217 (227)
T 2tps_A 146 YPTETKKDTRAVQGVSLI--EAVRRQG-I-SIPIVGIGGIT-IDNAAP---VIQAGADGVSMISAISQAEDPESAARKFR 217 (227)
T ss_dssp SCCCSSSSCCCCCTTHHH--HHHHHTT-C-CCCEEEESSCC-TTTSHH---HHHTTCSEEEESHHHHTSSCHHHHHHHHH
T ss_pred cCCCCCCCCCCccCHHHH--HHHHHhC-C-CCCEEEEcCCC-HHHHHH---HHHcCCCEEEEhHHhhcCCCHHHHHHHHH
Confidence 1 134332 2222222 1 1345543 33 555554 4568999998865 577 6666666
Q ss_pred Hhh
Q 017770 201 EYF 203 (366)
Q Consensus 201 ~~~ 203 (366)
+.+
T Consensus 218 ~~~ 220 (227)
T 2tps_A 218 EEI 220 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 70
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=71.80 E-value=9.2 Score=35.15 Aligned_cols=82 Identities=20% Similarity=0.105 Sum_probs=50.3
Q ss_pred Chhhhhhhcccc--CCCCeEEEeCCCCeeeehhhh---hhcccCCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE--
Q 017770 119 TPQELQQLQPAD--GQAENIVIDLPDWQVIPAENI---VASFQGSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-- 188 (366)
Q Consensus 119 ~~ed~e~~~~~~--~~~~~vvv~~~DW~iIPlENl---iA~~q~~~~~l~a~v~--~~~eA~~al-~~LE~G~DGVvl-- 188 (366)
+++...+++... ..+||+-+.+. ..+|.+ .+.....+...+..++ +.+++...+ .+++.|++|+..
T Consensus 157 s~~~i~~a~~~a~~~GAD~vkt~~~----~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgr 232 (263)
T 1w8s_A 157 APEIVAYAARIALELGADAMKIKYT----GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR 232 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC----SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC----CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 566655543322 35899988753 133443 3333222556666677 888887555 688999999965
Q ss_pred ---ecCCH-HHHHHHHHhhc
Q 017770 189 ---KVEDV-KAVLALKEYFD 204 (366)
Q Consensus 189 ---~~~d~-~ev~~l~~~~~ 204 (366)
..+|| ..+++|++++.
T Consensus 233 aI~~~~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 233 NVWQRRDALKFARALAELVY 252 (263)
T ss_dssp HHHTSTTHHHHHHHHHHHHC
T ss_pred hhcCCcCHHHHHHHHHHHHh
Confidence 55676 45556666653
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=71.75 E-value=17 Score=27.02 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+.. ....++......+ ......+++.|+++++.+|-+++++.+.
T Consensus 55 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 124 (140)
T 1k68_A 55 RPDLILLXLNLPK-KDGREVLAEIKSDPTLKRIPVVVLSTSIN-EDDIFHSYDLHVNCYITKSANLSQLFQI 124 (140)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCcEEEEecCCCc-ccHHHHHHHHHcCcccccccEEEEecCCc-HHHHHHHHHhchhheecCCCCHHHHHHH
Confidence 4677777433221 222234444332 2345666555443 3455678899999999999999887653
No 72
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=71.58 E-value=2 Score=44.97 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=86.5
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+|++.+.-|+|.|+|.|.++. .+++.++++.++ +.+.|..+..+.+|.+++-++.+..-....|-+
T Consensus 194 kD~~dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDGI 260 (606)
T 3t05_A 194 KDAEDIRFGIKENVDFIAASFVRRPSDVLEIREI-------------LEEQKANISVFPKIENQEGIDNIEEILEVSDGL 260 (606)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HHHTTCCCEEEECCCSHHHHHTHHHHHHHCSCE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEeCCHHHHHhHHHHHHhCCEE
Confidence 578889999999999777663 234455544443 333345677888999999887766655557888
Q ss_pred EEeCCCCe-eeehhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 017770 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (366)
Q Consensus 137 vv~~~DW~-iIPlENl-------iA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (366)
+|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 261 mVARGDLgvei~~e~vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~y 340 (606)
T 3t05_A 261 MVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLY 340 (606)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCC
Confidence 88433322 2455553 33332223334431 235578888899999999999998432
Q ss_pred -HHHHHHHHHhhc
Q 017770 193 -VKAVLALKEYFD 204 (366)
Q Consensus 193 -~~ev~~l~~~~~ 204 (366)
.+.|+-+.+++.
T Consensus 341 PveaV~~m~~I~~ 353 (606)
T 3t05_A 341 PEEAVKTMRNIAV 353 (606)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 366766666664
No 73
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=71.07 E-value=19 Score=30.46 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=56.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
-.+.+..+++.|++.+-+...+ .+.++++.++. +.-+ +..++. ++.+.+.. ..
T Consensus 28 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~-------------~~~~--v~v~v~----~~~~~a~~--~g 86 (215)
T 1xi3_A 28 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLT-------------REYD--ALFFVD----DRVDVALA--VD 86 (215)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHH-------------HHTT--CEEEEE----SCHHHHHH--HT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH-------------HHcC--CeEEEc----ChHHHHHH--cC
Confidence 3688999999999998775321 12222222211 0011 122221 23232222 25
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++.+.+...|. |.+.+ .++. .+..+...+.+.+|++. +.+.|+|.|++.+
T Consensus 87 ad~v~l~~~~~---~~~~~-~~~~-~~~~~~v~~~t~~e~~~---~~~~g~d~i~~~~ 136 (215)
T 1xi3_A 87 ADGVQLGPEDM---PIEVA-KEIA-PNLIIGASVYSLEEALE---AEKKGADYLGAGS 136 (215)
T ss_dssp CSEEEECTTSC---CHHHH-HHHC-TTSEEEEEESSHHHHHH---HHHHTCSEEEEEC
T ss_pred CCEEEECCccC---CHHHH-HHhC-CCCEEEEecCCHHHHHH---HHhcCCCEEEEcC
Confidence 67888865554 34433 3332 23345556789988764 4678999999854
No 74
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=70.56 E-value=14 Score=32.13 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
...+.++.-.... ....|.+|++..-...=-+ .++..+.. ....++..... .+......+++.|++|.+.+|-+++
T Consensus 66 ~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~-~l~~~lr~~~~~~iI~lt~~-~~~~~~~~a~~~Ga~~yl~Kp~~~~ 142 (249)
T 3q9s_A 66 HADSAMNGLIKAR-EDHPDLILLDLGLPDFDGG-DVVQRLRKNSALPIIVLTAR-DTVEEKVRLLGLGADDYLIKPFHPD 142 (249)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEEECCSCHHHHH-HHHHHHHTTCCCCEEEEESC-CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHH-HHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHCCCcEEEECCCCHH
Confidence 4456555333222 2356888885442221111 23333322 23455555443 3445677889999999999999998
Q ss_pred HHHHH
Q 017770 195 AVLAL 199 (366)
Q Consensus 195 ev~~l 199 (366)
++.+.
T Consensus 143 ~L~~~ 147 (249)
T 3q9s_A 143 ELLAR 147 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 75
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=70.43 E-value=29 Score=30.02 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=35.1
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
..++.+-+...+ .|.+.+-... . +..+...+.|.+|++. +.+.|+|.|++.+
T Consensus 87 ~gad~v~l~~~~---~~~~~~~~~~-~-~~~ig~sv~t~~~~~~---a~~~gaD~i~~~~ 138 (221)
T 1yad_A 87 STIHRVQLPSGS---FSPKQIRARF-P-HLHIGRSVHSLEEAVQ---AEKEDADYVLFGH 138 (221)
T ss_dssp TTCCEEEECTTS---CCHHHHHHHC-T-TCEEEEEECSHHHHHH---HHHTTCSEEEEEC
T ss_pred cCCCEEEeCCCc---cCHHHHHHHC-C-CCEEEEEcCCHHHHHH---HHhCCCCEEEECC
Confidence 356777776554 3555554433 2 4567778889988765 4578999999966
No 76
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=69.35 E-value=25 Score=27.31 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=46.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G-~DGVvl~~~d 192 (366)
...+.++.-.........+.++++..-... .--.++..+. .....++... +..+......+++.| +++++.+|-+
T Consensus 32 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~ii~~s-~~~~~~~~~~~~~~g~~~~~l~KP~~ 109 (151)
T 3kcn_A 32 TCESGPEALACIKKSDPFSVIMVDMRMPGM-EGTEVIQKARLISPNSVYLMLT-GNQDLTTAMEAVNEGQVFRFLNKPCQ 109 (151)
T ss_dssp EESSHHHHHHHHHHSCCCSEEEEESCCSSS-CHHHHHHHHHHHCSSCEEEEEE-CGGGHHHHHHHHHHTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHHcCCCCCEEEEeCCCCCC-cHHHHHHHHHhcCCCcEEEEEE-CCCCHHHHHHHHHcCCeeEEEcCCCC
Confidence 345555433333222224778885442221 1112232222 2344555544 445566778899999 9999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 110 ~~~L~~~ 116 (151)
T 3kcn_A 110 MSDIKAA 116 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 77
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=69.26 E-value=27 Score=26.40 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=50.4
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++......++......+++.|+++++.+|-+
T Consensus 36 ~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~ 113 (140)
T 3grc_A 36 VHSAAQALEQVAR-RPYAAMTVDLNLPD-QDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID 113 (140)
T ss_dssp ECSHHHHHHHHHH-SCCSEEEECSCCSS-SCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC
T ss_pred ECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC
Confidence 3454443332222 34677777433211 222234444433 35678888888777766668999999999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 114 ~~~l~~~ 120 (140)
T 3grc_A 114 ENLLILS 120 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877654
No 78
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=68.99 E-value=28 Score=30.49 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=46.7
Q ss_pred eeee-hhhhhhccc-CCCceEEEEcCCHH-----HHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 144 QVIP-AENIVASFQ-GSGKTVFAISKTPS-----EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 144 ~iIP-lENliA~~q-~~~~~l~a~v~~~~-----eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
+-|| ||.+++.+. +.+..+.-+.++.. -++..+..+++ .+-|++.+-|+..+..+++..
T Consensus 77 ~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~-~~~v~i~Sf~~~~l~~~~~~~ 142 (224)
T 1vd6_A 77 PDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG-REGVWVSSFDPLALLALRKAA 142 (224)
T ss_dssp TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT-CSSEEEEESCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHC
Confidence 3455 999999987 55677889988754 25678888888 888999999999888887754
No 79
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=68.67 E-value=8.9 Score=35.16 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=61.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcch------------h---hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 017770 60 KQVMTAAVERGWNTFVFLSENQ------------Q---LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~------------~---~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (366)
.+.+..|++.|++.|.++..+. + +++++..+.. ..| +.+-|.+.-++
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~-------------~~~----~~liInd~~~l- 107 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAH-------------RYG----ALFAVNDRADI- 107 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHH-------------HTT----CEEEEESCHHH-
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHH-------------hhC----CEEEEeCHHHH-
Confidence 5788999999999999876431 1 2222322211 112 22345555543
Q ss_pred hhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
+.. -.++-|-+...|. |.+.+-.. .+....|-..+.|.+|++.+ .+.|+|-|.+.|
T Consensus 108 --A~~-~gAdGVHLg~~dl---~~~~~r~~-~~~~~~iG~S~ht~~Ea~~A---~~~GaDyI~vgp 163 (243)
T 3o63_A 108 --ARA-AGADVLHLGQRDL---PVNVARQI-LAPDTLIGRSTHDPDQVAAA---AAGDADYFCVGP 163 (243)
T ss_dssp --HHH-HTCSEEEECTTSS---CHHHHHHH-SCTTCEEEEEECSHHHHHHH---HHSSCSEEEECC
T ss_pred --HHH-hCCCEEEecCCcC---CHHHHHHh-hCCCCEEEEeCCCHHHHHHH---hhCCCCEEEEcC
Confidence 222 2456677755554 55444332 23345677788999997754 568999999954
No 80
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=68.23 E-value=8.3 Score=33.27 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=58.2
Q ss_pred eeEEEEEEEEEcCCc-ceEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEE
Q 017770 215 LMKATVTRVDVAGMG-DRVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYV 284 (366)
Q Consensus 215 L~~atVt~V~~vGmG-DRVCVDtcS-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN----AGaVHaYv 284 (366)
..+++|++++.+.-. -|+.+.... -+.||+=+.+ +-.....++...|||=+- .|.+.=++
T Consensus 3 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l----------~~~~~~~~~~~~R~ySi~s~~~~~~~~i~v 72 (243)
T 4eh1_A 3 GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGI----------EVTPEGSDYREIRQYSLSHASNGREYRISV 72 (243)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEE----------EECCSSCSSCEEEEEEBCSCCCSSCEEEEE
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEE----------EEecCCCccccceeeEeccCCCCCeEEEEE
Confidence 357888888887532 234444322 2445553332 111111122234555552 24455555
Q ss_pred Eec-------CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 285 LVP-------GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 285 ~~P-------ggkT~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
..- |.-|+||. .|+.||+|.+-...|+...- -..+|++||=+
T Consensus 73 k~~~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~------~~~~~~vliag 122 (243)
T 4eh1_A 73 KREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV------ERERPVVLISA 122 (243)
T ss_dssp ECTTTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC------CCSSCEEEEEE
T ss_pred EEeecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC------CCCCCEEEEEc
Confidence 543 44599996 69999999998888875421 24678888854
No 81
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=68.12 E-value=5.4 Score=37.27 Aligned_cols=116 Identities=8% Similarity=0.065 Sum_probs=62.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vv 137 (366)
-...+..|-|.|+|++|++.=-.|...++... .++.|-....++.-+ +.|.++.++......=|.+
T Consensus 105 ~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~-------------~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~V 171 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVPELSFEESDDLIKE-------------CERYNIALITLVSVTTPKERVKKLVKHAKGFIYLL 171 (252)
T ss_dssp HHHHHHHHHHTTEEEEECTTCCGGGCHHHHHH-------------HHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEE
Confidence 36689999999999999985212222222222 112233333333333 3566666665533333333
Q ss_pred Ee--CCCC-eee--ehhhhhhcccCCC-ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 ID--LPDW-QVI--PAENIVASFQGSG-KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~--~~DW-~iI--PlENliA~~q~~~-~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
-. .++- +-+ +++++++++.... ..++ ..++++++|+.+ .+ ++|||++-+.
T Consensus 172 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~---~~-~ADGVIVGSA 229 (252)
T 3tha_A 172 ASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRM---RK-VADGVIVGTS 229 (252)
T ss_dssp CCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH---TT-TSSEEEECHH
T ss_pred ecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHH---Hh-cCCEEEECHH
Confidence 21 1121 122 2567777665432 2233 346788888754 34 6999998764
No 82
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=68.04 E-value=14 Score=27.66 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=44.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-.. ..--.++..+. .....++...... +......+++.|+++++.+|-++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~kp~~~ 107 (134)
T 3f6c_A 31 ELTEGGSAVQRVET-LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIIIIVSAKN-DHFYGKHCADAGANGFVSKKEGM 107 (134)
T ss_dssp EESSSTTHHHHHHH-HCCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEEEEEECC----CTHHHHHHTTCSEEEEGGGCT
T ss_pred EcCCHHHHHHHHHh-cCCCEEEEecCCCC-CChHHHHHHHHhcCCCCeEEEEeCCC-ChHHHHHHHHhCCCEEEeCCCCH
Confidence 34554443332222 34677888544222 12222333332 2244566555444 34456788899999999999998
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 108 ~~l~~~ 113 (134)
T 3f6c_A 108 NNIIAA 113 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 83
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=68.02 E-value=28 Score=30.28 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~-~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vv 137 (366)
.+++.++.+.|++.+-+.. +..+.+++...+..+.. ..++ ++..+ . -+. ..++.+.+.. ..++.+.
T Consensus 39 ~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~--~~~~--~~~~~----~--~i~~~~~~i~~~~~--~Gad~V~ 106 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGI--IKKD--YPPQE----P--FITATMTEVDQLAA--LNIAVIA 106 (234)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEE--CBCC--CTTSC----C--CBSCSHHHHHHHHT--TTCSEEE
T ss_pred HHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEee--EcCC--CCccc----c--ccCChHHHHHHHHH--cCCCEEE
Confidence 6788999999999988763 22333333333222111 0111 11001 1 122 2344333332 4578888
Q ss_pred EeCCC---CeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeE
Q 017770 138 IDLPD---WQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 138 v~~~D---W~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (366)
+.... +.--.+..++..+... +..++..+.+.+||+. +++.|+|.|
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~---a~~~Gad~i 157 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV---AHQAGIDFV 157 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHH---HHHTTCSEE
T ss_pred EcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHH---HHHcCCCEE
Confidence 75541 2112345666665433 5578889999999654 567899988
No 84
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=68.01 E-value=8.5 Score=36.45 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=35.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
.++...+.+++|++.++ +.|+|+|.|++-++++++++++.+.
T Consensus 198 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 239 (299)
T 2jbm_A 198 LKVEVECSSLQEAVQAA---EAGADLVLLDNFKPEELHPTATVLK 239 (299)
T ss_dssp SCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 57999999999987655 6799999999999999988777663
No 85
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=67.92 E-value=4.1 Score=36.64 Aligned_cols=109 Identities=9% Similarity=0.082 Sum_probs=54.1
Q ss_pred HHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEEEeC--
Q 017770 64 TAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVIDL-- 140 (366)
Q Consensus 64 T~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vvv~~-- 140 (366)
..|.+.|+|+++++....+...++-.. .++.|......+...+ .+.++.+.... .+++.+..
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~-------------~~~~g~~~i~~~a~~t~~e~~~~~~~~~--~g~v~~~s~~ 176 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSE-------------AKNNNLELVLLTTPAIPEDRMKEITKAS--EGFVYLVSVN 176 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHH-------------HHHTTCEECEEECTTSCHHHHHHHHHHC--CSCEEEECSS
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHH-------------HHHcCCceEEEECCCCCHHHHHHHHhcC--CCeEEEecCC
Confidence 349999999999876433222222111 1122333333333333 34444444432 24555432
Q ss_pred --CCC-eeee--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 141 --PDW-QVIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 141 --~DW-~iIP--lENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++- +-+| ...+++++.+. +..|+ ..+++++.++. +++.|+|||++-+
T Consensus 177 G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~---~~~~GAdgvvVGS 231 (262)
T 1rd5_A 177 GVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQ---IAQWGADGVIIGS 231 (262)
T ss_dssp CCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH---HHHTTCSEEEECH
T ss_pred CCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHH---HHHcCCCEEEECh
Confidence 111 0223 34466655421 22333 34566766665 5678999999865
No 86
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=67.89 E-value=13 Score=34.73 Aligned_cols=107 Identities=10% Similarity=0.065 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..|+|.|+|.+.+...+ .+..+.+.+ .|.+ +++.+.+.++...+.. ..+|++++
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~-----------------~g~~--v~~~v~~~~~a~~~~~--~GaD~i~v 136 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFHE-----------------AGII--VIPVVPSVALAKRMEK--IGADAVIA 136 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCGGGTHHHHHH-----------------TTCE--EEEEESSHHHHHHHHH--TTCSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChHHHHHHHHH-----------------cCCe--EEEEeCCHHHHHHHHH--cCCCEEEE
Confidence 678899999999999987543 222222211 1322 3356788877555443 35899999
Q ss_pred eCC--CCe--eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 139 DLP--DWQ--VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 139 ~~~--DW~--iIPlENliA~~q~-~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
... +.. -.|.-.++.++.. .+..|++. +.|.+++..+ |+.|+|||.+-+
T Consensus 137 ~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~a---l~~GAdgV~vGs 192 (332)
T 2z6i_A 137 EGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG---FMLGAEAVQVGT 192 (332)
T ss_dssp ECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH---HHTTCSEEEECH
T ss_pred ECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH---HHcCCCEEEecH
Confidence 653 111 1222234443221 12345443 4566666554 457999999864
No 87
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=67.81 E-value=22 Score=31.15 Aligned_cols=134 Identities=15% Similarity=0.031 Sum_probs=63.7
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~---~~~~~~~l~~i~--~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (366)
.+++-. .+.+.+..+++.|+|.+++... +.+..+++..++ .+-.+...+|...- .|-.-. .-.+.+++.
T Consensus 75 pvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~-~g~~~~---~~~~~~e~~ 150 (241)
T 1qo2_A 75 HIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAF-KGWLAE---EEIDPVSLL 150 (241)
T ss_dssp GEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECC-TTCSSC---SCCCHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEE-CCceec---CCCCHHHHH
Confidence 366643 4567788899999999998753 223333332221 11111112221111 110000 001333322
Q ss_pred hhccccCCCCeEEEeCCCC----eeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHh--hcc-cCeEEEec
Q 017770 125 QLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL--EQG-LGGIVLKV 190 (366)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~L--E~G-~DGVvl~~ 190 (366)
..+.. ...+.+++...+- +-+.+|.+-.-.+..+..+++ .++++++++.+++.- -.| +|||++-.
T Consensus 151 ~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 151 KRLKE-YGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHHT-TTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHHh-CCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 22222 3467777765321 112344332211222446766 478888888776540 119 99999864
No 88
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=67.78 E-value=10 Score=32.56 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=57.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
+.+.+..|++.|+|.+.++..+.+..+...+. |..+ ++.+.++++...+.. ...+++.+
T Consensus 69 ~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~-----------------g~~~--~~g~~t~~e~~~a~~--~G~d~v~v 127 (212)
T 2v82_A 69 KPEQVDALARMGCQLIVTPNIHSEVIRRAVGY-----------------GMTV--CPGCATATEAFTALE--AGAQALKI 127 (212)
T ss_dssp SHHHHHHHHHTTCCEEECSSCCHHHHHHHHHT-----------------TCEE--ECEECSHHHHHHHHH--TTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHc-----------------CCCE--EeecCCHHHHHHHHH--CCCCEEEE
Confidence 46789999999999998776554444333222 1111 112577877654432 45888887
Q ss_pred eCCCCeeeehhh---hhhcccCCCceEEEEcC-CHHHHHHHHHHhhcccCeEEEec
Q 017770 139 DLPDWQVIPAEN---IVASFQGSGKTVFAISK-TPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 139 ~~~DW~iIPlEN---liA~~q~~~~~l~a~v~-~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
...+ ...++. +.+.+. .+..+++.-. +.++++.+ ++.|+|||++-+
T Consensus 128 ~~t~--~~g~~~~~~l~~~~~-~~ipvia~GGI~~~~i~~~---~~~Ga~gv~vGs 177 (212)
T 2v82_A 128 FPSS--AFGPQYIKALKAVLP-SDIAVFAVGGVTPENLAQW---IDAGCAGAGLGS 177 (212)
T ss_dssp TTHH--HHCHHHHHHHHTTSC-TTCEEEEESSCCTTTHHHH---HHHTCSEEEECT
T ss_pred ecCC--CCCHHHHHHHHHhcc-CCCeEEEeCCCCHHHHHHH---HHcCCCEEEECh
Confidence 2211 122332 222221 1245655421 25555544 557999999764
No 89
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=67.76 E-value=22 Score=27.95 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=65.8
Q ss_pred CcEEEEEeC---chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhh
Q 017770 50 PKRVWIWTE---SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (366)
Q Consensus 50 ~K~vWiw~~---~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~ 126 (366)
++.+.|-=- -..+.....+.|++-++++.+ .+..+++..- |.. ..+...++++.++.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~-~~~~~~~~~~-----------------~~~-~~~gd~~~~~~l~~~ 66 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS-KEKIELLEDE-----------------GFD-AVIADPTDESFYRSL 66 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC-HHHHHHHHHT-----------------TCE-EEECCTTCHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC-HHHHHHHHHC-----------------CCc-EEECCCCCHHHHHhC
Confidence 345555321 356777777889987777664 4444433321 110 122234566665554
Q ss_pred ccccCCCCeEEEeCCCCeeeehhhhh----hcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 127 QPADGQAENIVIDLPDWQVIPAENIV----ASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 127 ~~~~~~~~~vvv~~~DW~iIPlENli----A~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
. ..+++.+|+...|.. .|+. |+-.+ ..++++.+++.+.++.+ .+.|+|-|+....
T Consensus 67 ~--~~~~d~vi~~~~~~~----~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l---~~~G~~~vi~p~~ 125 (141)
T 3llv_A 67 D--LEGVSAVLITGSDDE----FNLKILKALRSVS-DVYAIVRVSSPKKKEEF---EEAGANLVVLVAD 125 (141)
T ss_dssp C--CTTCSEEEECCSCHH----HHHHHHHHHHHHC-CCCEEEEESCGGGHHHH---HHTTCSEEEEHHH
T ss_pred C--cccCCEEEEecCCHH----HHHHHHHHHHHhC-CceEEEEEcChhHHHHH---HHcCCCEEECHHH
Confidence 2 346788888555432 2322 22223 67899999999988766 4679998775544
No 90
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=67.75 E-value=23 Score=29.36 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=47.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-... ...+.++++..-+.. .--.++..+.. ....++......+ ......+++.|++|++.+|-++
T Consensus 30 ~~~~~~~al~~~---~~~dlvllD~~lp~~-~g~~~~~~lr~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 104 (220)
T 1p2f_A 30 TFLTGEDFLNDE---EAFHVVVLDVMLPDY-SGYEICRMIKETRPETWVILLTLLSD-DESVLKGFEAGADDYVTKPFNP 104 (220)
T ss_dssp EESSHHHHHHCC---SCCSEEEEESBCSSS-BHHHHHHHHHHHCTTSEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCH
T ss_pred EECCHHHHHHhc---CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCcEEEEEcCCC-HHHHHHHHHcCCCEEEECCCCH
Confidence 445655433322 457888885442221 11223333322 3556666655443 4456788999999999999999
Q ss_pred HHHHHHH
Q 017770 194 KAVLALK 200 (366)
Q Consensus 194 ~ev~~l~ 200 (366)
+++.+.-
T Consensus 105 ~~L~~~i 111 (220)
T 1p2f_A 105 EILLARV 111 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 91
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=67.56 E-value=12 Score=36.22 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=62.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--h-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN--Q-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~--~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
.+.+..++|.|+|.|++...+ . ...+.+..+.. .-+.++. ...+.++++.+.+.. ..+|++
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~-------------~~~~~Vi-vg~v~t~e~A~~l~~--aGaD~I 170 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKS-------------KMNIDVI-VGNVVTEEATKELIE--NGADGI 170 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHH-------------HCCCEEE-EEEECSHHHHHHHHH--TTCSEE
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHH-------------hcCCcEE-EccCCCHHHHHHHHH--cCcCEE
Confidence 688999999999988874322 1 11111111100 0011111 126688887666553 468899
Q ss_pred EEeC-----------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 137 VIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 137 vv~~-----------~DW~iIP----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
++-. .+|. .| +.++...++..+..|++ .+.+.+++..++ ..|+|||++-+-
T Consensus 171 ~VG~~~Gs~~~tr~~~g~g-~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal---a~GAd~V~vGs~ 238 (361)
T 3khj_A 171 KVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 238 (361)
T ss_dssp EECSSCCTTCCHHHHTCBC-CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH---HHTCSEEEESTT
T ss_pred EEecCCCcCCCcccccCCC-CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH---HcCCCEEEEChh
Confidence 8821 1222 23 22332222222456887 578888876664 569999998765
No 92
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=67.09 E-value=14 Score=35.01 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~--~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
.+.+..++|.|++.+.+.-+. .+.++.+... |.. +...+.+.++...+.. ..+|+++
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~~-----------------g~~--v~~~v~t~~~a~~a~~--~GaD~i~ 170 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVPDREVIARLRRA-----------------GTL--TLVTATTPEEARAVEA--AGADAVI 170 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCCCHHHHHHHHHT-----------------TCE--EEEEESSHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHC-----------------CCe--EEEECCCHHHHHHHHH--cCCCEEE
Confidence 667888999999988776432 3344433221 333 2345678877544433 4589999
Q ss_pred EeCCC-----Cee----------eehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 017770 138 IDLPD-----WQV----------IPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 138 v~~~D-----W~i----------IPlENliA~~q~-~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++... .+. ++.-.++.++.. .+..|++. +.|.+++.. +|+.|+|||.+-+
T Consensus 171 v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~---~l~~GAd~V~vGs 238 (369)
T 3bw2_A 171 AQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAA---VLAAGADAAQLGT 238 (369)
T ss_dssp EECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHH---HHHTTCSEEEESH
T ss_pred EeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHH---HHHcCCCEEEECh
Confidence 96531 111 342334444321 13345543 456666554 4568999999864
No 93
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=66.60 E-value=28 Score=27.22 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=48.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~al~~l~~-~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~ 112 (154)
T 3gt7_A 36 HVRNGREAVRFLSL-TRPDLIISDVLMPE-MDGYALCRWLKGQPDLRTIPVILLTILS-DPRDVVRSLECGADDFITKPC 112 (154)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCEEEEECCC-SHHHHHHHHHHCCSEEEESSC
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCCCEEEEECCC-ChHHHHHHHHCCCCEEEeCCC
Confidence 34565553333322 34678888654222 112223333322 344566655433 344567788999999999999
Q ss_pred CHHHHHHH-HHhh
Q 017770 192 DVKAVLAL-KEYF 203 (366)
Q Consensus 192 d~~ev~~l-~~~~ 203 (366)
++.++.+. +.++
T Consensus 113 ~~~~l~~~i~~~l 125 (154)
T 3gt7_A 113 KDVVLASHVKRLL 125 (154)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 99877653 3444
No 94
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=66.38 E-value=33 Score=25.74 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=47.1
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..+.++....... ...+.++++..-.. ..--.++..+.. ....++......+ ......+++.|+++++.+|-+
T Consensus 40 ~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kP~~ 116 (143)
T 3cnb_A 40 AYNPFDAGDLLHT-VKPDVVMLDLMMVG-MDGFSICHRIKSTPATANIIVIAMTGALT-DDNVSRIVALGAETCFGKPLN 116 (143)
T ss_dssp ECSHHHHHHHHHH-TCCSEEEEETTCTT-SCHHHHHHHHHTSTTTTTSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCC
T ss_pred ECCHHHHHHHHHh-cCCCEEEEecccCC-CcHHHHHHHHHhCccccCCcEEEEeCCCC-HHHHHHHHhcCCcEEEeCCCC
Confidence 3555443332222 34677887654222 222234444433 3456776655543 445678899999999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 117 ~~~l~~~ 123 (143)
T 3cnb_A 117 FTLLEKT 123 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 95
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=65.88 E-value=22 Score=26.84 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=38.9
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccC---CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQG---SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~---~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
.+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-+++++.+.
T Consensus 53 ~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (136)
T 3hdv_A 53 IGLMITDLRMQP-ESGLDLIRTIRASERAALSIIVVSGDT-DVEEAVDVMHLGVVDFLLKPVDLGKLLEL 120 (136)
T ss_dssp EEEEEECSCCSS-SCHHHHHHHHHTSTTTTCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CcEEEEeccCCC-CCHHHHHHHHHhcCCCCCCEEEEeCCC-ChHHHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 466666433111 122234444332 334666655543 34566788999999999999999877653
No 96
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=65.87 E-value=33 Score=25.16 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=45.1
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHH
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~e 195 (366)
..+.++...... ....+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++.+.+|-++++
T Consensus 32 ~~~~~~~~~~~~-~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~ 108 (122)
T 1zgz_A 32 TASGAGLREIMQ-NQSVDLILLDINLPD-ENGLMLTRALRERSTVGIILVTGRS-DRIDRIVGLEMGADDYVTKPLELRE 108 (122)
T ss_dssp ESSHHHHHHHHH-HSCCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEEEEESSC-CHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred ecCHHHHHHHHh-cCCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEEEEECCC-ChhhHHHHHHhCHHHHccCCCCHHH
Confidence 345544333222 234677777543222 122234444432 344566555443 3345567889999999999999887
Q ss_pred HHH
Q 017770 196 VLA 198 (366)
Q Consensus 196 v~~ 198 (366)
+.+
T Consensus 109 l~~ 111 (122)
T 1zgz_A 109 LVV 111 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 97
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=65.77 E-value=9.9 Score=34.98 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=73.7
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEEcCcch--h----hhhhccceeeeeeeeecCCcccc--CCCCeeEEEEEecC
Q 017770 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ--Q----LAIDWSTIALLDPLFIKEGEVYD--SGDRRVGSIIEVST 119 (366)
Q Consensus 50 ~K~vWiw~--~~K~~vT~ALEsG~~~~vv~~~~~--~----~~~~l~~i~~i~~l~~~~g~~~~--~~gk~v~~~~~v~~ 119 (366)
....|+|. .+.+.+..|+.+|+|.++++-||. + +......+. .. +.. ++ ..+..+ ++.|..
T Consensus 7 ~~rs~L~~p~~~~~~~~~a~~~gaD~vilDlEdav~~~~~~k~~Ar~~v~--~~--l~~---~~~~~~~~~~--~VRv~~ 77 (284)
T 1sgj_A 7 LLRSVLFAPGNRADLIAKLPRSAPDAVVIDLEDAVPGTAEAKAAARPVAH--DA--ARD---LIAAAPHLAV--FVRVNA 77 (284)
T ss_dssp CCSEEEEEETTCHHHHHHTTTTCCSEEEEESSTTSCSSHHHHHHHHHHHH--HH--HHH---HHHHSTTSEE--EEECCC
T ss_pred CCceEEEccCCCHHHHHHHHhCCCCEEEEECCCCCCCchhhHHHHHHHHH--HH--HHh---cccccCCCeE--EEEeCC
Confidence 34567776 688999999999999999997652 1 111111110 00 000 01 112333 334443
Q ss_pred ---hh---hhhhhccccCCCCeEEEeCCCCeeeehhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhc-ccCeEE
Q 017770 120 ---PQ---ELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIV 187 (366)
Q Consensus 120 ---~e---d~e~~~~~~~~~~~vvv~~~DW~iIPlENl---iA~~q--~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVv 187 (366)
+. |+..+.. ..+.+++ +++=-.|++ .+.+. +.+..+++.+.+++-...+-+++.. |+||+.
T Consensus 78 ~~~~~~~~dl~~~l~---g~~~i~l----Pkv~s~~~v~~~~~~l~~~g~~~~i~~~IEt~~av~~~~eIa~~~~vd~l~ 150 (284)
T 1sgj_A 78 LHSPYFEDDLSVLTP---ELSGVVV----PKLEMGAEARQVAQMLQERSLPLPILAGLETGAGVWNAREIMEVPEVAWAY 150 (284)
T ss_dssp TTSTTHHHHGGGCCT---TSSEEEE----CSCCSHHHHHHHHHHHHHTTCCCCEEEEECSHHHHHTHHHHHTSTTEEEEE
T ss_pred CCCHhHHHHHHHHhc---cCCEEEe----CCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHHHHHHHHcCCCCcEEE
Confidence 44 3333332 4556666 222222332 22221 2356799999999988888888853 899999
Q ss_pred EecCCHH
Q 017770 188 LKVEDVK 194 (366)
Q Consensus 188 l~~~d~~ 194 (366)
+-+.|..
T Consensus 151 iG~~DL~ 157 (284)
T 1sgj_A 151 FGAEDYT 157 (284)
T ss_dssp ECHHHHH
T ss_pred ECHHHHH
Confidence 9988754
No 98
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=65.63 E-value=31 Score=30.45 Aligned_cols=69 Identities=16% Similarity=0.011 Sum_probs=32.6
Q ss_pred CCCeEEEeCCC----CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 017770 132 QAENIVIDLPD----WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (366)
Q Consensus 132 ~~~~vvv~~~D----W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~~ 202 (366)
..+.+++...+ .+-+.+|.+-.-.+..+..+++ .++++++++.++ +.|+|||++-+. .+..+.+++++
T Consensus 169 G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~---~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 169 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF---LAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH---HHTCSEEEESTTTC------------
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH---HcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 46777774321 1112344332222222345665 468888888766 479999999753 23334444555
Q ss_pred h
Q 017770 203 F 203 (366)
Q Consensus 203 ~ 203 (366)
+
T Consensus 246 l 246 (266)
T 2w6r_A 246 L 246 (266)
T ss_dssp -
T ss_pred H
Confidence 4
No 99
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=65.62 E-value=25 Score=28.15 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=62.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
..+.....+.|++-++++.+ .+.++++.+.+. . ..+...++++.++.+. ..+++.+|+-
T Consensus 20 ~~la~~L~~~g~~v~vid~~-~~~~~~~~~~g~-----------------~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 78 (140)
T 3fwz_A 20 SLLGEKLLASDIPLVVIETS-RTRVDELRERGV-----------------R-AVLGNAANEEIMQLAH--LECAKWLILT 78 (140)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHTTC-----------------E-EEESCTTSHHHHHHTT--GGGCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHcCC-----------------C-EEECCCCCHHHHHhcC--cccCCEEEEE
Confidence 56666666789998887764 445544433211 1 1122234555544432 2457888876
Q ss_pred CCCCeeeehhhh----hhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 140 LPDWQVIPAENI----VASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 140 ~~DW~iIPlENl----iA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..+- .+|+ .++-.....++++.+++.+.++.+. +.|+|-|+....
T Consensus 79 ~~~~----~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~---~~G~d~vi~p~~ 127 (140)
T 3fwz_A 79 IPNG----YEAGEIVASARAKNPDIEIIARAHYDDEVAYIT---ERGANQVVMGER 127 (140)
T ss_dssp CSCH----HHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH---HTTCSEEEEHHH
T ss_pred CCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HCCCCEEECchH
Confidence 5553 3443 1222234569999999999988664 589998885444
No 100
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=64.55 E-value=26 Score=26.41 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 81 ~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 120 (129)
T 3h1g_A 81 EIPIIMITAEG-GKAEVITALKAGVNNYIVKPFTPQVLKEK 120 (129)
T ss_dssp TCCEEEEESCC-SHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CCeEEEEeCCC-ChHHHHHHHHcCccEEEeCCCCHHHHHHH
Confidence 34566655543 33456678999999999999999887653
No 101
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=64.19 E-value=14 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred ceeeeeeccCCCeEEEEcC-CCCeeEEeeeeEEEe
Q 017770 290 KTCYLSELKSGKEVIVVDQ-KGRQRTAVVGRVKIE 323 (366)
Q Consensus 290 kT~YLSEL~sG~eVLvVd~-~G~tR~a~VGRvKIE 323 (366)
+..+-++|+.||.|++.|. +|..|...|=++..+
T Consensus 85 ~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 85 TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 5678999999999999997 777888877776543
No 102
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=64.19 E-value=6.7 Score=34.50 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh-hhhhccccCCCC-eEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE-LQQLQPADGQAE-NIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed-~e~~~~~~~~~~-~vv 137 (366)
.+.+..|++.|+|.++++....+..+++-+. .+..|..+...+...++.+ ++.+... .+ ++.
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~ 161 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEI-------------AREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVY 161 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHH-------------HHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHH-------------HHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEE
Confidence 5899999999999999986432222222111 0111233333333333332 2222222 33 543
Q ss_pred EeCC----CCe--eeeh-hhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 IDLP----DWQ--VIPA-ENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~~~----DW~--iIPl-ENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+-.. +-+ ..|. .+.++++.+. +..|++ .+++.++++.++ +.|+|||++-+.
T Consensus 162 ~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~---~~Gad~vivGsa 222 (248)
T 1geq_A 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL---KEGANGVVVGSA 222 (248)
T ss_dssp EECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred EEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHH---HcCCCEEEEcHH
Confidence 3221 111 2231 2344443321 234443 567778777654 579999998763
No 103
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=64.09 E-value=27 Score=28.96 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=48.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-+.. .--.++..+.. ....++...... +......+++.|++|++.+|-++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~-~g~~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~Kp~~~ 107 (225)
T 1kgs_A 31 VCYDGEEGMYMALN-EPFDVVILDIMLPVH-DGWEILKSMRESGVNTPVLMLTALS-DVEYRVKGLNMGADDYLPKPFDL 107 (225)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSS-CHHHHHHHHHHTTCCCCEEEEESSC-HHHHHHHTCCCCCSEEEESSCCH
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHhCCccEEEeCCCCH
Confidence 44565553333222 356888886543321 11233443322 345666655543 45567789999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 108 ~~l~~~ 113 (225)
T 1kgs_A 108 RELIAR 113 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 104
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=63.68 E-value=24 Score=26.60 Aligned_cols=66 Identities=8% Similarity=0.124 Sum_probs=41.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC----CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~----~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+... ...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 62 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 131 (149)
T 1k66_A 62 RPAVILLDLNLPG-TDGREVLQEIKQDEVLKKIPVVIMTTSS-NPKDIEICYSYSISSYIVKPLEIDRLTET 131 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHTTSTTGGGSCEEEEESCC-CHHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhCcccCCCeEEEEeCCC-CHHHHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 4677777443222 2223445554432 34566655543 34556778899999999999999887654
No 105
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=63.48 E-value=5.3 Score=35.80 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=63.3
Q ss_pred hhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 60 KQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~--~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
.+.+..|++.|+|++.+..+ ..+...+.-+ .+.+.|+.++..+.-.++.+ .+.......|++.
T Consensus 75 ~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~-------------~i~~~g~~~gv~~~p~t~~e--~~~~~~~~~D~v~ 139 (230)
T 1tqj_A 75 EKYVEDFAKAGADIISVHVEHNASPHLHRTLC-------------QIRELGKKAGAVLNPSTPLD--FLEYVLPVCDLIL 139 (230)
T ss_dssp GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHH-------------HHHHTTCEEEEEECTTCCGG--GGTTTGGGCSEEE
T ss_pred HHHHHHHHHcCCCEEEECcccccchhHHHHHH-------------HHHHcCCcEEEEEeCCCcHH--HHHHHHhcCCEEE
Confidence 34679999999999998876 2111111111 12334666666654455543 3333344678887
Q ss_pred EeCC-----CCeeee--hhhhhhcccCC------CceE--EEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HH
Q 017770 138 IDLP-----DWQVIP--AENIVASFQGS------GKTV--FAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AV 196 (366)
Q Consensus 138 v~~~-----DW~iIP--lENliA~~q~~------~~~l--~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~-ev 196 (366)
+-.- .-+.+| +|.| +++... +..| ...++. + .+-.+.+.|+||+++- .+|+. .+
T Consensus 140 ~msv~pg~ggq~~~~~~~~~i-~~lr~~~~~~~~~~~I~v~GGI~~-~---~~~~~~~aGad~vvvGSai~~a~d~~~~~ 214 (230)
T 1tqj_A 140 IMSVNPGFGGQSFIPEVLPKI-RALRQMCDERGLDPWIEVDGGLKP-N---NTWQVLEAGANAIVAGSAVFNAPNYAEAI 214 (230)
T ss_dssp EESSCC----CCCCGGGHHHH-HHHHHHHHHHTCCCEEEEESSCCT-T---TTHHHHHHTCCEEEESHHHHTSSCHHHHH
T ss_pred EEEeccccCCccCcHHHHHHH-HHHHHHHHhcCCCCcEEEECCcCH-H---HHHHHHHcCCCEEEECHHHHCCCCHHHHH
Confidence 6433 222343 3332 222111 2222 223332 3 3445577899999985 34663 45
Q ss_pred HHHHH
Q 017770 197 LALKE 201 (366)
Q Consensus 197 ~~l~~ 201 (366)
++|++
T Consensus 215 ~~l~~ 219 (230)
T 1tqj_A 215 AGVRN 219 (230)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55544
No 106
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=63.40 E-value=27 Score=26.54 Aligned_cols=40 Identities=5% Similarity=0.020 Sum_probs=28.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++...... +......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 119 (136)
T 3kto_A 80 HLPTIVMASSS-DIPTAVRAMRASAADFIEKPFIEHVLVHD 119 (136)
T ss_dssp CCCEEEEESSC-CHHHHHHHHHTTCSEEEESSBCHHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHHHHcChHHheeCCCCHHHHHHH
Confidence 44565554433 34556778899999999999999877654
No 107
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=63.04 E-value=44 Score=24.78 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHH----HHHHHHHhhcccCeEEEe
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSE----AQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~e----A~~al~~LE~G~DGVvl~ 189 (366)
...+.++....... ..+.+|++..-.. ..--.++..+. .....++......++ ++....+++.|+++.+.+
T Consensus 32 ~~~~~~~~~~~~~~--~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~K 108 (135)
T 3eqz_A 32 AFQHPRAFLTLSLN--KQDIIILDLMMPD-MDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTK 108 (135)
T ss_dssp EESCHHHHTTSCCC--TTEEEEEECCTTT-THHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred eecCHHHHHHhhcc--CCCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCC
Confidence 34666654443332 2677777543211 11222333332 234567777666654 577888999999999999
Q ss_pred cCCHHHHHHHHH
Q 017770 190 VEDVKAVLALKE 201 (366)
Q Consensus 190 ~~d~~ev~~l~~ 201 (366)
|-++.++.+.-+
T Consensus 109 P~~~~~l~~~l~ 120 (135)
T 3eqz_A 109 PINTEVLTCFLT 120 (135)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999988765433
No 108
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=62.97 E-value=33 Score=30.25 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=61.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.++++.|++.+=++..+..-.+.+..+.. + +..+++= .+.+.++.+.+.. ..+++++.
T Consensus 27 ~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~--~------------~~~~gag-~vl~~d~~~~A~~--~GAd~v~~ 89 (207)
T 2yw3_A 27 LLGLARVLEEEGVGALEITLRTEKGLEALKALRK--S------------GLLLGAG-TVRSPKEAEAALE--AGAAFLVS 89 (207)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT--S------------SCEEEEE-SCCSHHHHHHHHH--HTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC--C------------CCEEEeC-eEeeHHHHHHHHH--cCCCEEEc
Confidence 3678999999999988776433211111111111 1 1222222 2456666555443 35788876
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
-..| .|+-..... .+..++-.+.|++|++.+ ++.|+|.|-+-|..
T Consensus 90 ~~~d---~~v~~~~~~---~g~~~i~G~~t~~e~~~A---~~~Gad~v~~fpa~ 134 (207)
T 2yw3_A 90 PGLL---EEVAALAQA---RGVPYLPGVLTPTEVERA---LALGLSALKFFPAE 134 (207)
T ss_dssp SSCC---HHHHHHHHH---HTCCEEEEECSHHHHHHH---HHTTCCEEEETTTT
T ss_pred CCCC---HHHHHHHHH---hCCCEEecCCCHHHHHHH---HHCCCCEEEEecCc
Confidence 4333 333333333 233456568999998665 56799999998854
No 109
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=62.91 E-value=8.5 Score=34.51 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+.|++|| .+++.+...++.|+|+|+.+..
T Consensus 208 ~~G~~v~~WTvn~~~~~~~l~~~GVdgIiTD~P 240 (252)
T 3qvq_A 208 AAGYKVLAFTINDESLALKLYNQGLDAVFSDYP 240 (252)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCCEEEESSH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCH
Confidence 4667899999 6799999999999999998653
No 110
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.58 E-value=39 Score=25.73 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=48.2
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++....... ...+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 37 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kp~ 113 (147)
T 2zay_A 37 QCGNAIEAVPVAVK-THPHLIITEANMPK-ISGMDLFNSLKKNPQTASIPVIALSGRA-TAKEEAQLLDMGFIDFIAKPV 113 (147)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTSCEEEEESSC-CHHHHHHHHHHTCSEEEESSC
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCCCEEEEeCCC-CHHHHHHHHhCCCCEEEeCCC
Confidence 34555543333222 34678888544222 222334444443 345666665543 345667888999999999999
Q ss_pred CHHHHHHH
Q 017770 192 DVKAVLAL 199 (366)
Q Consensus 192 d~~ev~~l 199 (366)
+++++.+.
T Consensus 114 ~~~~L~~~ 121 (147)
T 2zay_A 114 NAIRLSAR 121 (147)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887653
No 111
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=62.40 E-value=21 Score=26.65 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=44.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-..... ...+.++++..-.. ..--+++..+.. ....++......++.. ..+++.|+++++.+|-
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~ 107 (133)
T 3nhm_A 32 TAADGASGLQQALA-HPPDVLISDVNMDG-MDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE--GPADQPVPDAYLVKPV 107 (133)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSSCSS-SCHHHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEESSC
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCC-CCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH--HHHhhcCCceEEeccC
Confidence 34555543332222 34677777433211 122234444433 2456777766654443 7899999999999999
Q ss_pred CHHHHHHH
Q 017770 192 DVKAVLAL 199 (366)
Q Consensus 192 d~~ev~~l 199 (366)
+++++.+.
T Consensus 108 ~~~~l~~~ 115 (133)
T 3nhm_A 108 KPPVLIAQ 115 (133)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99877654
No 112
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=62.37 E-value=35 Score=27.18 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=41.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCH-HHHHHHHHHhhcccCeEEEecCC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTP-SEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~-~eA~~al~~LE~G~DGVvl~~~d 192 (366)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++...... ++.+....+++.|+++++.+|-+
T Consensus 56 ~~~~~~~al~~l~~-~~~dlvilD~~l~~-~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~ 132 (164)
T 3t8y_A 56 FAKDGLEAVEKAIE-LKPDVITMDIEMPN-LNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHG 132 (164)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSS-SCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSS
T ss_pred ecCCHHHHHHHhcc-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcCEEEeCCCC
Confidence 34555543332222 34677888543221 111223333221 124566555533 33567788999999999999998
No 113
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=61.98 E-value=47 Score=25.69 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=47.7
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G-~DGVvl~~~d 192 (366)
...+.++.-..... ...+.+|++..-... .--.++..+. .....++..... .+......+++.| +++++.+|-+
T Consensus 43 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~ 119 (153)
T 3hv2_A 43 FARDATQALQLLAS-REVDLVISAAHLPQM-DGPTLLARIHQQYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWD 119 (153)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSS-CHHHHHHHHHHHCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCC
T ss_pred EECCHHHHHHHHHc-CCCCEEEEeCCCCcC-cHHHHHHHHHhHCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCC
Confidence 44565554333322 357788885542221 1122333322 234566665554 3445667889999 9999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 120 ~~~l~~~ 126 (153)
T 3hv2_A 120 DQELLLA 126 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 114
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=61.72 E-value=24 Score=30.22 Aligned_cols=49 Identities=27% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.++.+.+...+. +++.+...+. . ..+-..+.+.+|++. +.+.|+|.|++
T Consensus 94 gad~v~l~~~~~---~~~~~~~~~g-~-~~~~~s~~t~~e~~~---a~~~g~d~v~~ 142 (227)
T 2tps_A 94 KADGIHIGQEDA---NAKEVRAAIG-D-MILGVSAHTMSEVKQ---AEEDGADYVGL 142 (227)
T ss_dssp TCSEEEECTTSS---CHHHHHHHHT-T-SEEEEEECSHHHHHH---HHHHTCSEEEE
T ss_pred CCCEEEECCCcc---CHHHHHHhcC-C-cEEEEecCCHHHHHH---HHhCCCCEEEE
Confidence 467787754443 3444443332 2 233334688888654 45789999996
No 115
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=61.54 E-value=19 Score=33.55 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=47.7
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
.++.+++++.. ..+|.|++-..+-..--++.++..+..-+-.++..+.|.+|++.++ +.|+|-|-+.+.|
T Consensus 123 id~~qv~~A~~--~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~---~~Gad~IGv~~r~ 192 (272)
T 3qja_A 123 VQPYQIHEARA--HGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRAL---KAGAKVIGVNARD 192 (272)
T ss_dssp CSHHHHHHHHH--TTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HHTCSEEEEESBC
T ss_pred cCHHHHHHHHH--cCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH---HCCCCEEEECCCc
Confidence 56666555443 4678888744332222356667666555667899999999988765 5699999998654
No 116
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=61.48 E-value=20 Score=32.37 Aligned_cols=108 Identities=15% Similarity=0.020 Sum_probs=60.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
-.+++.++++.|++.+=++..+..-.+.+..+..- ++ +..+++= .+.+.++.+.+.. ..+++++.
T Consensus 40 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~----------~~--~~~igag-tvl~~d~~~~A~~--aGAd~v~~ 104 (225)
T 1mxs_A 40 ILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQ----------RP--ELCVGAG-TVLDRSMFAAVEA--AGAQFVVT 104 (225)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHH----------CT--TSEEEEE-CCCSHHHHHHHHH--HTCSSEEC
T ss_pred HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHh----------Cc--ccEEeeC-eEeeHHHHHHHHH--CCCCEEEe
Confidence 35789999999999888875432111112212110 00 1222222 3456676555443 35788876
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
-..| .|+-..-. ..+..++..+.|++|+.. +++.|+|-|-+-|
T Consensus 105 p~~d---~~v~~~~~---~~g~~~i~G~~t~~e~~~---A~~~Gad~vk~FP 147 (225)
T 1mxs_A 105 PGIT---EDILEAGV---DSEIPLLPGISTPSEIMM---GYALGYRRFKLFP 147 (225)
T ss_dssp SSCC---HHHHHHHH---HCSSCEECEECSHHHHHH---HHTTTCCEEEETT
T ss_pred CCCC---HHHHHHHH---HhCCCEEEeeCCHHHHHH---HHHCCCCEEEEcc
Confidence 4433 22222222 233455556999999755 5689999998877
No 117
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=61.39 E-value=31 Score=26.64 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+. .....++..... .+......+++.|++|++.+|-+++++.+.
T Consensus 61 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 128 (152)
T 3eul_A 61 LPDVALLDYRMPG-MDGAQVAAAVRSYELPTRVLLISAH-DEPAIVYQALQQGAAGFLLKDSTRTEIVKA 128 (152)
T ss_dssp CCSEEEEETTCSS-SCHHHHHHHHHHTTCSCEEEEEESC-CCHHHHHHHHHTTCSEEEETTCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCeEEEEEcc-CCHHHHHHHHHcCCCEEEecCCCHHHHHHH
Confidence 4567777543221 11122333332 234456655544 344566788999999999999999877653
No 118
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=61.38 E-value=10 Score=35.90 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=35.4
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
+|..++.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+.
T Consensus 196 ~I~Vev~t~eea~ea---l~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 196 PCEVEVDSLEQLDAV---LPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp CEEEEESSHHHHHHH---GGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 899999999888765 56799999999999999988777663
No 119
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=61.20 E-value=28 Score=30.43 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=21.7
Q ss_pred cEEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 017770 51 KRVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 51 K~vWiw~--~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
..+++-- .+.+.+..+++.|+|.+++..+
T Consensus 76 ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~ 106 (244)
T 1vzw_A 76 IKVELSGGIRDDDTLAAALATGCTRVNLGTA 106 (244)
T ss_dssp SEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred CcEEEECCcCCHHHHHHHHHcCCCEEEECch
Confidence 3466632 3567799999999999998764
No 120
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=61.09 E-value=16 Score=32.31 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=59.5
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~---------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (366)
-.+++..+.+.|++.+.+...+ .+..+++.+- -+.++....-+.+.++++.+..
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~----------------~~iPvi~~ggi~~~~~i~~~~~- 94 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL----------------TTLPIIASGGAGKMEHFLEAFL- 94 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGG----------------CCSCEEEESCCCSTHHHHHHHH-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHh----------------cCCCEEEECCCCCHHHHHHHHH-
Confidence 4678889999999998875422 1222222221 1222222223467777776554
Q ss_pred cCCCCeEEEeCCCC-eeeehhhhhhcccCCC---ceEEEEcCC-------------------HHHHHHHHHHhhcccCeE
Q 017770 130 DGQAENIVIDLPDW-QVIPAENIVASFQGSG---KTVFAISKT-------------------PSEAQIFLEALEQGLGGI 186 (366)
Q Consensus 130 ~~~~~~vvv~~~DW-~iIPlENliA~~q~~~---~~l~a~v~~-------------------~~eA~~al~~LE~G~DGV 186 (366)
..++.+++-...- ..|+++.+...++..+ .+++..+.. ....+.+..+.+.|++.|
T Consensus 95 -~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i 173 (266)
T 2w6r_A 95 -AGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEI 173 (266)
T ss_dssp -HTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred -cCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEE
Confidence 2578888866665 4556565555433322 233222221 122344556678999999
Q ss_pred EEec
Q 017770 187 VLKV 190 (366)
Q Consensus 187 vl~~ 190 (366)
++..
T Consensus 174 ~~t~ 177 (266)
T 2w6r_A 174 LLTS 177 (266)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
No 121
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=60.93 E-value=48 Score=24.60 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 174 IFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 174 ~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
....+++.|+++++.+|-+++++.+.
T Consensus 93 ~~~~~~~~g~~~~l~kP~~~~~l~~~ 118 (132)
T 3lte_A 93 KLQQAVTEGADDYLEKPFDNDALLDR 118 (132)
T ss_dssp HHHHHHHHTCCEEECSSCCHHHHHHH
T ss_pred HHHHHHHhChHHHhhCCCCHHHHHHH
Confidence 56788999999999999999877543
No 122
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=60.89 E-value=44 Score=25.44 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=45.9
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~ 112 (144)
T 3kht_A 36 FVDNGAKALYQVQQ-AKYDLIILDIGLPI-ANGFEVMSAVRKPGANQHTPIVILTDNV-SDDRAKQCMAAGASSVVDKSS 112 (144)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEECTTCGG-GCHHHHHHHHHSSSTTTTCCEEEEETTC-CHHHHHHHHHTTCSEEEECCT
T ss_pred EECCHHHHHHHhhc-CCCCEEEEeCCCCC-CCHHHHHHHHHhcccccCCCEEEEeCCC-CHHHHHHHHHcCCCEEEECCC
Confidence 34555543332221 34677777433211 112234444443 345566655443 335567788999999999999
Q ss_pred -CHHHHHHH
Q 017770 192 -DVKAVLAL 199 (366)
Q Consensus 192 -d~~ev~~l 199 (366)
+++++.+.
T Consensus 113 ~~~~~l~~~ 121 (144)
T 3kht_A 113 NNVTDFYGR 121 (144)
T ss_dssp TSHHHHHHH
T ss_pred CcHHHHHHH
Confidence 98877654
No 123
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=60.74 E-value=9.6 Score=34.00 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=27.5
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
...+.+++|| .+++.+...++.|+|+|+.+..
T Consensus 194 ~~G~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P 226 (238)
T 3no3_A 194 VLGMTSNVWTVDDPKLMEEMIDMGVDFITTDLP 226 (238)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEECCCH
Confidence 4667899999 5789999999999999998653
No 124
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=60.65 E-value=13 Score=32.74 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=55.0
Q ss_pred eeeEEEEEEEEEcCCcceEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEEE
Q 017770 214 SLMKATVTRVDVAGMGDRVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYVL 285 (366)
Q Consensus 214 ~L~~atVt~V~~vGmGDRVCVDtc----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN----AGaVHaYv~ 285 (366)
...+++|++++.++- |-..+-.. --++||+=+.+--... .+. ..|||=+- .+-+.=++.
T Consensus 18 ~~~~~~V~~~~~~~~-~~~~~~l~~~~~~~~~pGQ~v~l~~~~~------~~~------~~r~ySi~s~~~~~~~~~~v~ 84 (271)
T 4fk8_A 18 KFDTATVLSVHHWTD-TLFSFTCTRDQALRFNNGEFTMVGLEVD------GKP------LTRAYSIVSPNYEEHLEFFSI 84 (271)
T ss_dssp CEEEEEEEEEEEEET-TEEEEEECCCTTCCCCTTCEEEEEEEET------TEE------EEEEEECCSCTTSSSEEEEEE
T ss_pred cceeEEEEEEEEcCC-CEEEEEEEcCCCCCcCCCCEEEEEccCC------Cce------eeeeEeccCCCCCCcEEEEEE
Confidence 467889999998863 32223221 1234554333211111 111 23444442 233333333
Q ss_pred -ec-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceEEEE
Q 017770 286 -VP-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 286 -~P-ggkT~YLSEL~sG~eVLvV-d~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.| |.-|+||.+|+.||+|.+- ...|+...... -..+|+++|=
T Consensus 85 ~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~----~~~~~~vlia 129 (271)
T 4fk8_A 85 KVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNL----LPGKTLWMLS 129 (271)
T ss_dssp CCTTCTTHHHHTTCCTTCEEEEESCCBCSCCGGGB----CCCSEEEEEE
T ss_pred EECCCchhhHHhcCCCCCEEEEecCCCcceecCCc----CCCCeEEEEE
Confidence 34 5679999999999999998 88886532100 0257888773
No 125
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=60.48 E-value=12 Score=33.05 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=61.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC---CC
Q 017770 59 SKQVMTAAVERGWNTFVFLSENQ-QL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG---QA 133 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~~-~~-~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~---~~ 133 (366)
..+.+..+++.|+|.+.+..+.- +. .+.+.. +.+.|+.++..+.-.++. +.+..... ..
T Consensus 76 ~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~--------------i~~~g~~igv~~~p~t~~--e~~~~~~~~~~~~ 139 (228)
T 1h1y_A 76 PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQS--------------IKAKGMRPGVSLRPGTPV--EEVFPLVEAENPV 139 (228)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHH--------------HHHTTCEEEEEECTTSCG--GGGHHHHHSSSCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccHHHHHHHH--------------HHHcCCCEEEEEeCCCCH--HHHHHHHhcCCCC
Confidence 34569999999999998876421 11 111111 122356666433223332 33333333 67
Q ss_pred CeEEEeCC---------CCeeeehhhhhhcccC--CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-H
Q 017770 134 ENIVIDLP---------DWQVIPAENIVASFQG--SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-K 194 (366)
Q Consensus 134 ~~vvv~~~---------DW~iIPlENliA~~q~--~~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~ 194 (366)
|++.+... +|+. ++. ++++.. .+..++ ..++. +.++ ++++.|+|++++- .+|+ .
T Consensus 140 d~vl~~sv~pg~~g~~~~~~~--l~~-i~~~~~~~~~~pi~v~GGI~~-~ni~---~~~~aGaD~vvvGsai~~~~d~~~ 212 (228)
T 1h1y_A 140 ELVLVMTVEPGFGGQKFMPEM--MEK-VRALRKKYPSLDIEVDGGLGP-STID---VAASAGANCIVAGSSIFGAAEPGE 212 (228)
T ss_dssp SEEEEESSCTTCSSCCCCGGG--HHH-HHHHHHHCTTSEEEEESSCST-TTHH---HHHHHTCCEEEESHHHHTSSCHHH
T ss_pred CEEEEEeecCCCCcccCCHHH--HHH-HHHHHHhcCCCCEEEECCcCH-HHHH---HHHHcCCCEEEECHHHHCCCCHHH
Confidence 89988432 2332 232 221111 022332 23332 4333 4455599999985 3566 4
Q ss_pred HHHHHHHhh
Q 017770 195 AVLALKEYF 203 (366)
Q Consensus 195 ev~~l~~~~ 203 (366)
.+++|++.+
T Consensus 213 ~~~~l~~~~ 221 (228)
T 1h1y_A 213 VISALRKSV 221 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666554
No 126
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=60.04 E-value=12 Score=34.79 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=38.0
Q ss_pred hhhhhcccCCCceEEEE-cCCHHH-------HHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 149 ENIVASFQGSGKTVFAI-SKTPSE-------AQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 149 ENliA~~q~~~~~l~a~-v~~~~e-------A~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
..+|++++..+-+|++- +++.++ ++.+-..++.|||||. ||+|+.+.++-
T Consensus 218 ~~~V~~ah~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIi--TD~P~~l~~~L 275 (292)
T 3mz2_A 218 REVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIE--SDRPIEVAEAI 275 (292)
T ss_dssp HHHHHHHHHTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEE--ESCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEE--eCCHHHHHHHH
Confidence 46888888888888875 566542 5677788999999987 88898776543
No 127
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=59.77 E-value=10 Score=34.02 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
..-+.|++|| .+++.+...++.|+|+|+.+..
T Consensus 202 ~~G~~V~~WTvn~~~~~~~l~~~GVDgIiTD~P 234 (250)
T 3ks6_A 202 AAGLDFGCWAAHTPSQITKALDLGVKVFTTDRP 234 (250)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCH
Confidence 4567899999 5789999999999999998653
No 128
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=59.63 E-value=34 Score=25.17 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=46.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-.... ....+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++.+.+|-
T Consensus 31 ~~~~~~~a~~~~~-~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~ 107 (127)
T 2jba_A 31 EAEDYDSAVNQLN-EPWPDLILLAWMLPG-GSGIQFIKHLRRESMTRDIPVVMLTARG-EEEDRVRGLETGADDCITKPF 107 (127)
T ss_dssp EECSHHHHHTTCS-SSCCSEEEEESEETT-EEHHHHHHHHHTSTTTTTSCEEEEEETT-HHHHHHTTCCCSCSEEEEESC
T ss_pred EeCCHHHHHHHHh-ccCCCEEEEecCCCC-CCHHHHHHHHHhCcccCCCCEEEEeCCC-CHHHHHHHHhcCCCeEEeCCC
Confidence 3455554333222 134577777432111 122234555433 345566555443 345667899999999999999
Q ss_pred CHHHHHHH
Q 017770 192 DVKAVLAL 199 (366)
Q Consensus 192 d~~ev~~l 199 (366)
+++++.+.
T Consensus 108 ~~~~l~~~ 115 (127)
T 2jba_A 108 SPKELVAR 115 (127)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887543
No 129
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=59.59 E-value=53 Score=24.65 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=46.9
Q ss_pred EecChhhhhhhcccc----CCCCeEEEeCCCCeeeehhhhhhccc------CCCceEEEEcCCHHHHHHHHHHhhcc-cC
Q 017770 116 EVSTPQELQQLQPAD----GQAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQG-LG 184 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~----~~~~~vvv~~~DW~iIPlENliA~~q------~~~~~l~a~v~~~~eA~~al~~LE~G-~D 184 (366)
...+.++.-...... ...+.+|++..-.. ..--.++..+. .....++..... .+......+++.| ++
T Consensus 40 ~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~ 117 (146)
T 3ilh_A 40 SVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELIDLFKQHFQPMKNKSIVCLLSSS-LDPRDQAKAEASDWVD 117 (146)
T ss_dssp EESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHHHHHHHHCGGGTTTCEEEEECSS-CCHHHHHHHHHCSSCC
T ss_pred ecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHHHHHHHhhhhccCCCeEEEEeCC-CChHHHHHHHhcCCcc
Confidence 445655533322221 45678888544222 22223333332 234556555444 3445566889999 99
Q ss_pred eEEEecCCHHHHHHH
Q 017770 185 GIVLKVEDVKAVLAL 199 (366)
Q Consensus 185 GVvl~~~d~~ev~~l 199 (366)
+++.+|-+++++.+.
T Consensus 118 ~~l~KP~~~~~L~~~ 132 (146)
T 3ilh_A 118 YYVSKPLTANALNNL 132 (146)
T ss_dssp EEECSSCCHHHHHHH
T ss_pred eeeeCCCCHHHHHHH
Confidence 999999999877654
No 130
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=59.49 E-value=23 Score=30.24 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=15.1
Q ss_pred hHHHHHHHhCCcEEEEcC
Q 017770 61 QVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~ 78 (366)
+.+..+++.|+|.+.+..
T Consensus 75 ~~i~~~~~~gad~v~vh~ 92 (220)
T 2fli_A 75 RYVEAFAQAGADIMTIHT 92 (220)
T ss_dssp GGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 356999999999998854
No 131
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=59.44 E-value=7 Score=36.88 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=26.5
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEE
Q 017770 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA 315 (366)
Q Consensus 283 Yv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a 315 (366)
=|+|.+|..+-..+++.||+||. .||..|.+
T Consensus 17 ~VLMADGS~K~IEdI~vGD~Vmg--~DG~pR~V 47 (237)
T 1gpp_A 17 NVLMADGSIECIENIEVGNKVMG--KDGRPREV 47 (237)
T ss_dssp EEEBTTSCEEEGGGCCTTCEEEB--TTSSEEEE
T ss_pred EEEEeCCCcceeeecccCCEEec--CCCCcceE
Confidence 58999999999999999999987 56666655
No 132
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=59.34 E-value=23 Score=28.88 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=44.3
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeeh---hhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPA---ENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPl---ENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
...+.++.-.... ....+.+++ |+.. |- -.++..+. .....++...... +......+++.|+++.+.+|
T Consensus 36 ~~~~~~~al~~~~-~~~~dlvl~---D~~l-p~~~g~~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~a~~~Ga~~~l~KP 109 (184)
T 3rqi_A 36 QAHNKDEALKLAG-AEKFEFITV---XLHL-GNDSGLSLIAPLCDLQPDARILVLTGYA-SIATAVQAVKDGADNYLAKP 109 (184)
T ss_dssp EECSHHHHHHHHT-TSCCSEEEE---CSEE-TTEESHHHHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCSEEEESS
T ss_pred EeCCHHHHHHHHh-hCCCCEEEE---eccC-CCccHHHHHHHHHhcCCCCCEEEEeCCC-CHHHHHHHHHhCHHHheeCC
Confidence 4456554333222 234677777 4432 21 12222222 2345666555443 44556788999999999999
Q ss_pred CCHHHHHH
Q 017770 191 EDVKAVLA 198 (366)
Q Consensus 191 ~d~~ev~~ 198 (366)
-+++++.+
T Consensus 110 ~~~~~L~~ 117 (184)
T 3rqi_A 110 ANVESILA 117 (184)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 99987754
No 133
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=59.16 E-value=54 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++..... .+......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 119 (140)
T 2qr3_A 80 DLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLET 119 (140)
T ss_dssp TCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHH
Confidence 4456655544 345667788999999999999999877554
No 134
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=58.34 E-value=23 Score=27.13 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...+.+|++..-.. ..--.++..+. .....++...... +......+++.|+++++.+|-+++++.+.
T Consensus 66 ~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 134 (146)
T 4dad_A 66 DAFDILMIDGAALD-TAELAAIEKLSRLHPGLTCLLVTTDA-SSQTLLDAMRAGVRDVLRWPLEPRALDDA 134 (146)
T ss_dssp TTCSEEEEECTTCC-HHHHHHHHHHHHHCTTCEEEEEESCC-CHHHHHHHHTTTEEEEEESSCCHHHHHHH
T ss_pred CCCCEEEEeCCCCC-ccHHHHHHHHHHhCCCCcEEEEeCCC-CHHHHHHHHHhCCceeEcCCCCHHHHHHH
Confidence 35677777543221 11112232221 2344566554433 44567788999999999999999887654
No 135
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=58.17 E-value=49 Score=31.72 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=63.5
Q ss_pred CchhHHHHHHHhCCcEEEEcC--cchh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLS--ENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~--~~~~-~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+..+.+..++|.|+|.+.+.. .+.+ ..+.+..+... .+ +.++.. ..+.+.++.+.+.. ..+|
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~----------~~--~~pviv-~~v~~~~~a~~a~~--~Gad 217 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTK----------YP--NLDLIA-GNIVTKEAALDLIS--VGAD 217 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH----------CT--TCEEEE-EEECSHHHHHHHHT--TTCS
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHH----------CC--CCeEEE-cCCCcHHHHHHHHh--cCCC
Confidence 346777889999999988632 2211 11111111110 00 223221 35678877655543 3589
Q ss_pred eEEEeC-----------CCCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 135 NIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 135 ~vvv~~-----------~DW~iIP----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+++.. .+|. .| +..+...++..+..|++ .+.+.+|+..++. .|+|+|.+-+.
T Consensus 218 ~I~vg~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala---~GAd~V~iG~~ 287 (404)
T 1eep_A 218 CLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA---AGADSVMIGNL 287 (404)
T ss_dssp EEEECSSCSTTSHHHHHHCCC-CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH---HTCSEEEECHH
T ss_pred EEEECCCCCcCcCccccCCCC-cchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH---cCCCHHhhCHH
Confidence 998821 2342 23 22333322334567887 6788888776654 69999998653
No 136
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=57.94 E-value=56 Score=25.26 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=46.8
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++....... ...+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++++.+|-++
T Consensus 32 ~~~~~~~a~~~l~~-~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~ 108 (155)
T 1qkk_A 32 SFASATEALAGLSA-DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILVTGH-GDIPMAVQAIQDGAYDFIAKPFAA 108 (155)
T ss_dssp EESCHHHHHHTCCT-TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEEECG-GGHHHHHHHHHTTCCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEEECC-CChHHHHHHHhcCCCeEEeCCCCH
Confidence 34555543332222 34677787544222 22223333332 234566665544 345567788999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++...
T Consensus 109 ~~L~~~ 114 (155)
T 1qkk_A 109 DRLVQS 114 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 137
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.87 E-value=61 Score=24.74 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+. .....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 48 ~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 115 (137)
T 3cfy_A 48 KPQLIILDLKLPD-MSGEDVLDWINQNDIPTSVIIATAH-GSVDLAVNLIQKGAEDFLEKPINADRLKTS 115 (137)
T ss_dssp CCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEEEEEESS-CCHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEEEEec-CcHHHHHHHHHCCccEEEeCCCCHHHHHHH
Confidence 4577777432111 11122333332 223455555443 334566788999999999999999887654
No 138
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=57.70 E-value=34 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.3
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+|+-- .+.+.+..+++.|+|.+++..+
T Consensus 76 pv~v~ggi~~~~~~~~~l~~Gad~V~lg~~ 105 (244)
T 2y88_A 76 QVELSGGIRDDESLAAALATGCARVNVGTA 105 (244)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence 466632 3567799999999999998764
No 139
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=57.67 E-value=27 Score=29.38 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc------CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q------~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
..+.+|++..-+. ..--.++..+. +....+|.......+......+++.|++++|.+|-+ .-...++.++.
T Consensus 119 ~~dlillD~~lp~-~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~-~L~~~i~~~l~ 195 (206)
T 3mm4_A 119 PFDYIFMDCQMPE-MDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN-QLANVIREIES 195 (206)
T ss_dssp SCSEEEEESCCSS-SCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT-THHHHHHHHC-
T ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH-HHHHHHHHHHh
Confidence 4677888543222 11122333332 245677777776545566778899999999999987 44444455553
No 140
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=57.65 E-value=14 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=17.8
Q ss_pred CchhHHHHHHHhCCcEEEEcC
Q 017770 58 ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~ 78 (366)
...+.+..|++.|++.++..+
T Consensus 63 ~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 63 GQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp STHHHHHHHHHTTCCEEEESH
T ss_pred CCHHHHHHHHHCCHHheEeCC
Confidence 347888999999999999765
No 141
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=57.59 E-value=12 Score=32.84 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=60.5
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchhhh-----hhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 017770 57 TESKQVMTAAVERGWNTFVFLSENQQLA-----IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (366)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~vv~~~~~~~~-----~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (366)
.+-.++...+.+.|+|.+-+...+.... ..+..+.. .-+.++-.-.-|.++++.+.+...
T Consensus 32 ~d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~-------------~~~ipv~v~ggI~~~~~~~~~l~~-- 96 (244)
T 1vzw_A 32 GSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQ-------------AMDIKVELSGGIRDDDTLAAALAT-- 96 (244)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHH-------------HCSSEEEEESSCCSHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHHHH-------------hcCCcEEEECCcCCHHHHHHHHHc--
Confidence 4456788888999999887654222111 11111111 111222222235788887766553
Q ss_pred CCCeEEEeCCCCeeee--hhhhhhcccCCCceEEEEcC----------------CHHHHHHHHHHhhcccCeEEEecCC
Q 017770 132 QAENIVIDLPDWQVIP--AENIVASFQGSGKTVFAISK----------------TPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIP--lENliA~~q~~~~~l~a~v~----------------~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
.++.+++....-+- | ++.++..+. .+++..++ ++. +.+..+++.|+|.|++.+-+
T Consensus 97 Gad~V~lg~~~l~~-p~~~~~~~~~~g---~~~~~~l~~~~g~v~~~g~~~~~~~~~--e~~~~~~~~G~~~i~~~~~~ 169 (244)
T 1vzw_A 97 GCTRVNLGTAALET-PEWVAKVIAEHG---DKIAVGLDVRGTTLRGRGWTRDGGDLY--ETLDRLNKEGCARYVVTDIA 169 (244)
T ss_dssp TCSEEEECHHHHHC-HHHHHHHHHHHG---GGEEEEEEEETTEECCSSSCCCCCBHH--HHHHHHHHTTCCCEEEEEC-
T ss_pred CCCEEEECchHhhC-HHHHHHHHHHcC---CcEEEEEEccCCEEEEcCcccCCCCHH--HHHHHHHhCCCCEEEEeccC
Confidence 58888884432111 1 556666542 23332222 333 34555677999999998744
No 142
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=56.78 E-value=22 Score=33.93 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=61.6
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcchh------hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhc
Q 017770 54 WIWTESKQVMTAAVERGWNTFVFLSENQQ------LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (366)
Q Consensus 54 Wiw~~~K~~vT~ALEsG~~~~vv~~~~~~------~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (366)
|.|--.....++-..+.+|-+|+++.+-. ..+++. .++..|+++..|+.+.+-|+-..-.
T Consensus 23 w~~~l~~~~~~~l~~~~yd~vViD~~~~g~~~~~~t~~~i~--------------~L~~~G~~viaYlSvGe~E~~R~y~ 88 (309)
T 2aam_A 23 WLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIK--------------IMVDAGVVPVAYVNIGQAEDYRFYW 88 (309)
T ss_dssp CEEECSSCCHHHHHTSCCSEEEECSBSSSSGGGBCCHHHHH--------------HHHHTTCEEEEEEESSEEETTSTTC
T ss_pred EEEEeCCCChhhhhhcCCCEEEEcCCcccccccCCCHHHHH--------------HHHhCCCEEEEEEecccccccchhh
Confidence 55553333333333478999999875210 011111 1344588888898888866521111
Q ss_pred cccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH----HHHHhhcccCeEEEecCCH
Q 017770 128 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI----FLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 128 ~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~----al~~LE~G~DGVvl~~~d~ 193 (366)
...|+.+|-.-|.....+=++.-+.-+.+++==+. +-.++++|.|||-|++=|.
T Consensus 89 ------------~~~w~~~~~~~lg~~n~~W~ge~~vDi~~~~w~~i~~~rl~~~~~kG~DGvflDnvD~ 146 (309)
T 2aam_A 89 ------------KESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDS 146 (309)
T ss_dssp ------------CTHHHHSCCTTEEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHHTTCSEEEEECTTH
T ss_pred ------------hhccccCCHHHhCccCCCCCCceEEecCCHHHHHHHHHHHHHHHHcCCCeEeecccch
Confidence 11233366555555433333445555555532111 1267889999999998764
No 143
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=56.64 E-value=27 Score=31.94 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=66.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchh-hhhhccceeeeeeeeecCCccccCC---------CCeeEEEEEecChhhhhhhc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQ-LAIDWSTIALLDPLFIKEGEVYDSG---------DRRVGSIIEVSTPQELQQLQ 127 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~-~~~~l~~i~~i~~l~~~~g~~~~~~---------gk~v~~~~~v~~~ed~e~~~ 127 (366)
.....+..+.+.|+|.+.|..+.-+ ..+-+. .+++. |+.++..+...++. +.+.
T Consensus 80 ~p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~--------------~i~~~~~~~~~~~~g~~~gv~l~p~Tp~--~~l~ 143 (237)
T 3cu2_A 80 NQLEVAKAVVANGANLVTLQLEQYHDFALTIE--------------WLAKQKTTYANQVYPVLIGACLCPETPI--SELE 143 (237)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTCTTSHHHHHH--------------HHTTCEEEETTEEEECEEEEEECTTSCG--GGGT
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcccHHHHHH--------------HHHhcccccccccCCceEEEEEeCCChH--HHHH
Confidence 4467899999999999888765211 111111 12233 55666665444543 3344
Q ss_pred cccCCCCeEEE---e--CCCCeeee--hhhh---hhcccCCC-ceEEEEcCCHHHHHHHHHHhh--cccCeEEEecC---
Q 017770 128 PADGQAENIVI---D--LPDWQVIP--AENI---VASFQGSG-KTVFAISKTPSEAQIFLEALE--QGLGGIVLKVE--- 191 (366)
Q Consensus 128 ~~~~~~~~vvv---~--~~DW~iIP--lENl---iA~~q~~~-~~l~a~v~~~~eA~~al~~LE--~G~DGVvl~~~--- 191 (366)
......|++.+ + |..-+.+| +|.| -+..+..+ .-.+.+-.-.. .+.+-.+.+ .|+|+++.-+.
T Consensus 144 ~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~ 222 (237)
T 3cu2_A 144 PYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS 222 (237)
T ss_dssp TTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred HHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence 44456888877 2 23334454 4432 12111110 12344334332 344556688 89999998643
Q ss_pred -CHH-HHHHHHH
Q 017770 192 -DVK-AVLALKE 201 (366)
Q Consensus 192 -d~~-ev~~l~~ 201 (366)
|+. .+++|++
T Consensus 223 ~d~~~~~~~l~~ 234 (237)
T 3cu2_A 223 GELKTNLKVWKS 234 (237)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 653 3444443
No 144
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=56.26 E-value=27 Score=33.40 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=65.4
Q ss_pred cCCCCeeEEEEEecChhhhhhhccccCCCCeE--------EEeCCCCeeeehhh-----hhhcccC-CCceEEEEcCCH-
Q 017770 105 DSGDRRVGSIIEVSTPQELQQLQPADGQAENI--------VIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP- 169 (366)
Q Consensus 105 ~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v--------vv~~~DW~iIPlEN-----liA~~q~-~~~~l~a~v~~~- 169 (366)
..+|.++..+..+.++++.+.+... .+|.| +++..+ .|-|. +...++. .+..++..+.|.
T Consensus 14 t~dg~~~~l~~n~~~p~~~~~a~~~--GadgVGL~RtE~l~ld~e~---~p~~~~q~~~~~~~~~~~~~~~v~VR~~d~g 88 (324)
T 2xz9_A 14 TPDGKKVMLAANIGTPKDVASALAN--GAEGVGLFRTEFLYMDRNS---LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIG 88 (324)
T ss_dssp CTTSCEEEEEEEESSGGGHHHHHHT--TCSSEEEECCGGGTSSSSS---CCCHHHHHHHHHHHHHHTTTSCEEEECCCCB
T ss_pred ccCCCEEEEEEECCCHHHHHHHHhC--CCCeEeehhhhhhhccCCC---CCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 4568889999999999998877654 35544 554444 55553 2222221 233577777663
Q ss_pred ----------------------------------HHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017770 170 ----------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (366)
Q Consensus 170 ----------------------------------~eA~~al~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (366)
.|.+..+.++..|.+||+++ .++++|+++++++++.
T Consensus 89 ~dk~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~ 159 (324)
T 2xz9_A 89 GDKELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEE 159 (324)
T ss_dssp GGGCCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 24467888999999999985 4678998888877754
No 145
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=56.21 E-value=67 Score=24.75 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=47.9
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G-~DGVvl~~~d 192 (366)
...+.++.-..... ...+.++++..-.. ..-..++..+. .....++...... +......+++.| +++++.+|-+
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~ 112 (154)
T 2rjn_A 36 TFTSPLDALEALKG-TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWE 112 (154)
T ss_dssp EESCHHHHHHHHTT-SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCC
Confidence 45665553333322 34678888544222 12223343332 2345666655544 456778889998 9999999999
Q ss_pred HHHHHHH
Q 017770 193 VKAVLAL 199 (366)
Q Consensus 193 ~~ev~~l 199 (366)
++++.+.
T Consensus 113 ~~~L~~~ 119 (154)
T 2rjn_A 113 DEDVFKV 119 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877553
No 146
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=55.93 E-value=41 Score=28.80 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=47.1
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...|.++++..-+. ..--.++..+.. ....++...... +......+++.|+||.+.+|-++
T Consensus 52 ~~~~~~~al~~~~~-~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~yl~Kp~~~ 128 (250)
T 3r0j_A 52 TATNGAQALDRARE-TRPDAVILDVXMPG-MDGFGVLRRLRADGIDAPALFLTARD-SLQDKIAGLTLGGDDYVTKPFSL 128 (250)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEEEEECST-THHHHHHHHTSTTCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 44565553333222 34688888544222 122234444332 244566554433 44556788999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 129 ~~L~~~ 134 (250)
T 3r0j_A 129 EEVVAR 134 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 147
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=55.75 E-value=66 Score=28.03 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=21.5
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc
Q 017770 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+++-. .+.+.+..+++.|+|.+++...
T Consensus 76 pvi~~ggI~~~~~~~~~~~~Gad~V~lg~~ 105 (253)
T 1thf_D 76 PFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp CEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 366643 3567799999999999999764
No 148
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=55.72 E-value=38 Score=33.21 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=65.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
+..+.+..+++.|+|.+.+...+ ....+.+..+....| +.++. ...+.+.++...+.. ..++
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p------------~~pvi-~g~~~t~e~a~~l~~--~G~d 301 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYP------------DLPVV-AGNVATPEGTEALIK--AGAD 301 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT------------TSCEE-EEEECSHHHHHHHHH--TTCS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCC------------CceEE-eCCcCCHHHHHHHHH--cCCC
Confidence 34778889999999999875432 111111111111000 12221 135678887655543 4588
Q ss_pred eEEEeC-----------CCCeeeeh----hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 135 NIVIDL-----------PDWQVIPA----ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 135 ~vvv~~-----------~DW~iIPl----ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.+++.. .+|. +|. ..+.+.+...+..|++ .+.+.+|+..++ ..|+|+|.+-..
T Consensus 302 ~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal---a~GAd~V~iGr~ 371 (494)
T 1vrd_A 302 AVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL---AAGAESVMVGSI 371 (494)
T ss_dssp EEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH---HTTCSEEEESHH
T ss_pred EEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH---HcCCCEEEECHH
Confidence 888833 1232 332 2333333334567888 788888887665 569999998753
No 149
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=55.66 E-value=28 Score=32.58 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=63.2
Q ss_pred chhHHHHHHHhCCcEEEEcCc-chhh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChh--hhhhhccccCCCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSE-NQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQ--ELQQLQPADGQAE 134 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~-~~~~-~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e--d~e~~~~~~~~~~ 134 (366)
+.+++.++.+.|.-+++.... +.+. .+.+..+.... ++++++-+-+.++. +.-..+.. .+.+
T Consensus 25 ~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~-------------~~p~gvnl~~~~~~~~~~~~~a~~-~g~d 90 (332)
T 2z6i_A 25 DGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLT-------------DKPFGVNIMLLSPFVEDIVDLVIE-EGVK 90 (332)
T ss_dssp CHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHC-------------CSCEEEEECTTSTTHHHHHHHHHH-TTCS
T ss_pred cHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhc-------------CCCEEEEecCCCCCHHHHHHHHHH-CCCC
Confidence 578888899999877885432 2222 11222221100 12233222222332 21122222 4678
Q ss_pred eEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 135 ~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
.|.+.+.. |. .++.++...+..++..+.+.++|+.+ .+.|+|+|++..
T Consensus 91 ~V~~~~g~----p~-~~i~~l~~~g~~v~~~v~~~~~a~~~---~~~GaD~i~v~g 138 (332)
T 2z6i_A 91 VVTTGAGN----PS-KYMERFHEAGIIVIPVVPSVALAKRM---EKIGADAVIAEG 138 (332)
T ss_dssp EEEECSSC----GG-GTHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred EEEECCCC----hH-HHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEEEC
Confidence 88887653 43 45666665677899999999998764 468999999964
No 150
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=55.63 E-value=9.2 Score=34.31 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+|..+. +.++++++..+-++++ .+++.++++.+ ++.|+|||+ ||+|+.+.++.+
T Consensus 188 ~~~~~~-~~~v~~~~~~G~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~~~ 242 (250)
T 3ks6_A 188 HIDTAD-AGLMAQVQAAGLDFGCWAAHTPSQITKA---LDLGVKVFT--TDRPTLAIALRT 242 (250)
T ss_dssp EGGGCC-HHHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHHHH
T ss_pred chhhCC-HHHHHHHHHCCCEEEEEeCCCHHHHHHH---HHcCCCEEE--cCCHHHHHHHHH
Confidence 344444 4567777766666655 56777776654 578999998 889988776544
No 151
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=55.39 E-value=20 Score=35.06 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=64.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
..++.+..+++.|+|.+++...+.+...-|..+..+.- .++ +.++. -..+.+.++...+.. ..++.+.
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~-------~~p--~~pvi-~G~v~t~~~a~~~~~--~Gad~I~ 300 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRA-------HFP--NRTLI-AGNIATAEGARALYD--AGVDVVK 300 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHH-------HCS--SSCEE-EEEECSHHHHHHHHH--TTCSEEE
T ss_pred hHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHH-------HCC--CCcEe-CCCccCHHHHHHHHH--cCCCEEE
Confidence 34788999999999999987521111111111111110 000 11221 335667776554443 3577777
Q ss_pred EeC-----------CCCeeeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 138 IDL-----------PDWQVIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 138 v~~-----------~DW~iIPlE---NliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
+.. .+|..-.++ .+.++.+..+..|++ .+.+.+|+..++ +.|+|+|++-.-
T Consensus 301 vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal---~~GA~~v~vG~~ 367 (491)
T 1zfj_A 301 VGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL---AAGGNAVMLGSM 367 (491)
T ss_dssp ECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred ECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHH---HcCCcceeeCHH
Confidence 731 245332233 333322234567887 678998887766 469999998554
No 152
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=55.37 E-value=46 Score=28.51 Aligned_cols=114 Identities=24% Similarity=0.222 Sum_probs=64.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeee-e-cCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLF-I-KEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~-~-~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~v 136 (366)
.+++..+.+.|++.+.+.. .+..+++.+..-+ |+. . ..+ +++.+ . .+ .+.++++.+.. ..++.+
T Consensus 26 ~~~a~~~~~~Ga~~i~~~~--~~~i~~i~~~~~~-pv~~~~~~~--~~~~~----~--~i~~~~~~i~~~~~--~Gad~v 92 (223)
T 1y0e_A 26 SKMALAAYEGGAVGIRANT--KEDILAIKETVDL-PVIGIVKRD--YDHSD----V--FITATSKEVDELIE--SQCEVI 92 (223)
T ss_dssp HHHHHHHHHHTCSEEEEES--HHHHHHHHHHCCS-CEEEECBCC--CTTCC----C--CBSCSHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHCCCeeeccCC--HHHHHHHHHhcCC-CEEeeeccC--CCccc----c--ccCCcHHHHHHHHh--CCCCEE
Confidence 5788888999999987753 3444444332211 211 0 000 00001 1 11 23344444332 357888
Q ss_pred EEeCCCCee--eehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 137 vv~~~DW~i--IPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+....-.- -+++.++.++... +..++..+.+.+|++. +.+.|+|.|.+.
T Consensus 93 ~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~---~~~~G~d~i~~~ 146 (223)
T 1y0e_A 93 ALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN---AARLGFDYIGTT 146 (223)
T ss_dssp EEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHH---HHHTTCSEEECT
T ss_pred EEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHH---HHHcCCCEEEeC
Confidence 886654211 3456666665443 5577889999999765 678999999864
No 153
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=55.11 E-value=20 Score=30.65 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=41.8
Q ss_pred eEEEecCCceeeeeeccCC-----------------------CeEEEEc-CCCCeeEEeeeeE-EEeccceEEEEEEeec
Q 017770 282 AYVLVPGGKTCYLSELKSG-----------------------KEVIVVD-QKGRQRTAVVGRV-KIESRPLILVEAKALA 336 (366)
Q Consensus 282 aYv~~PggkT~YLSEL~sG-----------------------~eVLvVd-~~G~tR~a~VGRv-KIE~RPLlLIeAe~~~ 336 (366)
+-|++++|.+.=+.||..+ ++|+.+| .+|+.....|=++ +...+||+.|+.+
T Consensus 10 t~V~l~dG~~~~I~el~~~~~~~~~~~g~~~~~~g~~~~~~~~~V~s~d~~~g~~~~~~v~~~~~~~~~~~~~i~t~--- 86 (168)
T 4e2u_A 10 TEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFVYTLDIASGEIKKTRASYIYREKVEKLIEIKLS--- 86 (168)
T ss_dssp CEEEEEETTEEEEEEHHHHHHHHHHHHCCEEETTEEEEECSSEEEEEECTTTCCEEEEECCEEEEEEEEEEEEEEET---
T ss_pred CEEEEeCCCEEEHHHHHhhhhhhccccCceeecccccccCCCeEEEEEeCCCCCEEEEEEeEEEEcCCCeEEEEEEC---
Confidence 4578888888888888773 8999999 7999887766443 4444577777764
Q ss_pred cCCCcee
Q 017770 337 LAGHSEP 343 (366)
Q Consensus 337 ~~~g~~~ 343 (366)
+|+++
T Consensus 87 --~G~~i 91 (168)
T 4e2u_A 87 --SGYSL 91 (168)
T ss_dssp --TSCEE
T ss_pred --CCCEE
Confidence 46554
No 154
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=54.82 E-value=22 Score=25.95 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=28.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++.. .. .+......+++.|+++++.+|-+++++.+.
T Consensus 80 ~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 118 (127)
T 2gkg_A 80 NVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLVER 118 (127)
T ss_dssp TSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHHHH
Confidence 4566666 33 344556688999999999999999876543
No 155
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=54.72 E-value=34 Score=25.16 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=44.5
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
...+.++.-.... ....+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++.+.+|-+++
T Consensus 32 ~~~~~~~a~~~~~-~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~ 108 (123)
T 1xhf_A 32 EATDGAEMHQILS-EYDINLVIMDINLPG-KNGLLLARELREQANVALMFLTGRD-NEVDKILGLEIGADDYITKPFNPR 108 (123)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEECSSCSS-SCHHHHHHHHHHHCCCEEEEEESCC-SHHHHHHHHHHTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEcCCCCC-CCHHHHHHHHHhCCCCcEEEEECCC-ChHHHHHHHhcCcceEEeCCCCHH
Confidence 3455554333222 234677777433211 111223333321 245566555443 334567788999999999999998
Q ss_pred HHHHH
Q 017770 195 AVLAL 199 (366)
Q Consensus 195 ev~~l 199 (366)
++...
T Consensus 109 ~l~~~ 113 (123)
T 1xhf_A 109 ELTIR 113 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 156
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=54.70 E-value=30 Score=31.43 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=57.2
Q ss_pred eEEEEEEEEEcCC----cc--eEEEeecC--CCCCCceEEEeccCceEEEEeeccc--cCCCCCCCCeeeecC-------
Q 017770 216 MKATVTRVDVAGM----GD--RVCVDLCS--LMRPGEGLLVGSFARGLFLVHSECL--ESNYIASRPFRVNAG------- 278 (366)
Q Consensus 216 ~~atVt~V~~vGm----GD--RVCVDtcS--ll~~GEGmLVGS~S~glFLVhsEt~--es~Yva~RPFRVNAG------- 278 (366)
..++|++++.+.- +| ++.++.-. -+.||+=+- ++-... .......|||-+---
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~----------l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~ 107 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVG----------VIPDGEDKNGKPHKLRLYSIASSALGDFGD 107 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEE----------EECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEE----------EecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence 5689999999975 34 44454322 134444222 221111 011234677776432
Q ss_pred --CceeEEEe----------cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 279 --PVHAYVLV----------PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 279 --aVHaYv~~----------Pgg-kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
-++=.|.. ++| -|+||.+|+.||+|.+-...|+.-... .-..+|++||=+
T Consensus 108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 170 (314)
T 1fnb_A 108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMP----KDPNATIIMLGT 170 (314)
T ss_dssp SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEE
T ss_pred CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEeC
Confidence 23323332 444 499999999999999987777542110 112578888844
No 157
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=54.49 E-value=15 Score=33.35 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=29.0
Q ss_pred CC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 gg-kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
+| -|+||.+|+.||+|.+-...|+.-... .. -..+|++||=+
T Consensus 131 ~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~--~~-~~~~~~vlIag 173 (314)
T 2rc5_A 131 KGVCSNYMCDLKPGDEVTMTGPSGKKFLLP--NT-DFSGDIMFLAT 173 (314)
T ss_dssp BCHHHHHHHTCCTTCEEEEEEEECSSSCCC--SS-CBCSCEEEEEE
T ss_pred CcchHHHHhcCCCcCEEEEEeccCCceeCC--CC-CCCCCEEEEEC
Confidence 45 699999999999999987777542110 00 12588888844
No 158
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=54.44 E-value=21 Score=33.70 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=58.8
Q ss_pred eeeEEEEEEEEEcCCcceE--EEeecC---------CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cC
Q 017770 214 SLMKATVTRVDVAGMGDRV--CVDLCS---------LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AG 278 (366)
Q Consensus 214 ~L~~atVt~V~~vGmGDRV--CVDtcS---------ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN----AG 278 (366)
...+++|++++.+. .|-. .+..-. -+.||+=+-|- +........|.-.|||-+- .|
T Consensus 148 ~~~~~~V~~~~~~s-~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~--------~~~~~~~~~~~~~R~ySi~s~p~~~ 218 (399)
T 4g1v_A 148 GWKPFEITAKEYVA-SDIVEFTVKPKFGSGIELESLPITPGQYITVN--------THPIRQENQYDALRHYSLCSASTKN 218 (399)
T ss_dssp SCEEEEEEEEEEEE-TTEEEEEEEECTTSCCCGGGCCCCTTCEEEEE--------ECCCSTTCCSCEEEEEEBSCSCCTT
T ss_pred cceEEEEEEEEEcC-CCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEE--------EeCCCCCCccceeeeecccCCCCCC
Confidence 56788999999885 2332 232211 24455533322 1001001123344555552 34
Q ss_pred CceeEEEe-------cCC-ceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEE-----eccceEEEEEE
Q 017770 279 PVHAYVLV-------PGG-KTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKI-----ESRPLILVEAK 333 (366)
Q Consensus 279 aVHaYv~~-------Pgg-kT~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKI-----E~RPLlLIeAe 333 (366)
.+.=.|.. |+| -|+|| ..++.||+|.+-...|.-. ..- ..+|++||=+-
T Consensus 219 ~~~i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~------l~~~~~~~~~~~~vlIagG 281 (399)
T 4g1v_A 219 GLRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFA------INKELIHQNEVPLVLLSSG 281 (399)
T ss_dssp CEEEEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCC------CCTTTTTCSSSCEEEEEEG
T ss_pred eEEEEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEeccccee------eCcccccCCCCCEEEEecc
Confidence 45555665 555 69999 5999999999987777632 111 25789988543
No 159
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=54.29 E-value=29 Score=32.59 Aligned_cols=108 Identities=9% Similarity=0.087 Sum_probs=62.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (366)
..+.+..++|.|+|.+.+..++ .+..+.+.+ .|.+ ++..+.+.++...+.. ..+|.++
T Consensus 91 ~~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~~-----------------~g~~--v~~~v~s~~~a~~a~~--~GaD~i~ 149 (326)
T 3bo9_A 91 ADDLVKVCIEEKVPVVTFGAGNPTKYIRELKE-----------------NGTK--VIPVVASDSLARMVER--AGADAVI 149 (326)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCCHHHHHHHHH-----------------TTCE--EEEEESSHHHHHHHHH--TTCSCEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCcHHHHHHHHH-----------------cCCc--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 3688999999999998887543 223322221 1333 3346788887665443 3589999
Q ss_pred EeCC--CCe--eeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 138 IDLP--DWQ--VIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 138 v~~~--DW~--iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
++.. +-. -+|--+++.++. ..+..|++ .+.|.+++..++ +.|+|||.+-+
T Consensus 150 v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al---~~GA~gV~vGs 206 (326)
T 3bo9_A 150 AEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF---ALGAEAVQMGT 206 (326)
T ss_dssp EECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH---HHTCSEEEESH
T ss_pred EECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH---HhCCCEEEech
Confidence 9652 111 122223333321 11334554 356777766555 46999999854
No 160
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=54.28 E-value=13 Score=33.51 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 49 ~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
..|.|.+|| .+++.|...++.|+|+|+.+..
T Consensus 223 lg~~V~~WTvn~~~~~~~l~~~GVDgIiTD~P 254 (285)
T 1xx1_A 223 FINKIYYWSVDKVSTTKAALDVGVDGIMTNYP 254 (285)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHTCSEEEESCH
T ss_pred CCCeEEEeeCCCHHHHHHHHhcCCCEEEeCCH
Confidence 334899999 6789999999999999998654
No 161
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=53.86 E-value=36 Score=25.33 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=27.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALK 200 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~~l~ 200 (366)
...++...... +......+++.|+++++.+|- +++++.+.-
T Consensus 79 ~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i 120 (130)
T 3eod_A 79 QTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 (130)
T ss_dssp CCCEEEEECCC-CHHHHHHHHHHCCSEEEESCC---CHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHHHHcCCCEEEeCCCCcHHHHHHHH
Confidence 45566555544 344566788999999999998 787766543
No 162
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=53.58 E-value=16 Score=31.97 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.+|+|| .+++.+...++.|+|+|+.+.
T Consensus 184 ~~G~~v~~wtvn~~~~~~~l~~~GvdgI~TD~ 215 (224)
T 1vd6_A 184 KRGLFVVAWTVNEEGEARRLLALGLDGLIGDR 215 (224)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCSEEEESC
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCCCEEEcCC
Confidence 4567899999 689999999999999999765
No 163
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=53.32 E-value=38 Score=30.13 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCCCeEEEeC-CCCeeeehhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEEec-----CCH-HHHHH
Q 017770 131 GQAENIVIDL-PDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVLKV-----EDV-KAVLA 198 (366)
Q Consensus 131 ~~~~~vvv~~-~DW~iIPlENliA~~q~~~~~l~a--~v~--~~~eA~~-al~~LE~G~DGVvl~~-----~d~-~ev~~ 198 (366)
..++++.+.. .||+.+ ..+.+.. +..+++ .++ +.+++.. +..+++.|+|||.+-+ +|| ..+++
T Consensus 178 ~Gad~i~~~~~~~~~~l--~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~ 252 (273)
T 2qjg_A 178 LGADIVKTSYTGDIDSF--RDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRA 252 (273)
T ss_dssp TTCSEEEECCCSSHHHH--HHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHH
T ss_pred cCCCEEEECCCCCHHHH--HHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHH
Confidence 4578888864 344432 3344332 334544 345 4777666 4566789999998753 465 34455
Q ss_pred HHHhh
Q 017770 199 LKEYF 203 (366)
Q Consensus 199 l~~~~ 203 (366)
+.+.+
T Consensus 253 l~~~~ 257 (273)
T 2qjg_A 253 VCKIV 257 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 164
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=53.29 E-value=47 Score=31.16 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=50.6
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
.++.++.++. ...++.|++....-+-=-++.++.....-+-.++++++|.+|++.+ ++.|+|=|=+...|
T Consensus 130 ~d~~qi~ea~--~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A---~~~ga~iIGinnr~ 199 (272)
T 3tsm_A 130 FDPYQVYEAR--SWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA---LKLSSRLLGVNNRN 199 (272)
T ss_dssp CSTHHHHHHH--HTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH---TTSCCSEEEEECBC
T ss_pred CCHHHHHHHH--HcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HhcCCCEEEECCCC
Confidence 5666666543 3578899988776543346778777666677899999999998765 57899966666443
No 165
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=53.10 E-value=30 Score=26.68 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=43.1
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-.........+.+|++..-.. ..--.++..+. .....++..... .+......+++.|++|++.+|-++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~ 111 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPD-AEAIDGLVRLKRFDPSNAVALISGE-TDHELIRAALEAGADGFIPKSADP 111 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTSCH
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCC-CchHHHHHHHHHhCCCCeEEEEeCC-CCHHHHHHHHHccCCEEEeCCCCH
Confidence 34565553333322134677777332111 11122333332 224566655544 445677789999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 112 ~~L~~~ 117 (154)
T 2qsj_A 112 QVLIHA 117 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 166
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=53.00 E-value=27 Score=33.01 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=34.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
.+|..++.|.+||+.+ ++.|+|.|+|.+=++.++++..+.+
T Consensus 197 ~~IgVev~t~eea~eA---~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 197 LKVEVEVRSLEELEEA---LEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp SCEEEEESSHHHHHHH---HHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4788999999998765 4679999999999999988776655
No 167
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=52.77 E-value=33 Score=31.43 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=56.3
Q ss_pred eeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeEE
Q 017770 215 LMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAYV 284 (366)
Q Consensus 215 L~~atVt~V~~vGmGD-RVCVDtcS-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN----AGaVHaYv 284 (366)
-.+++|++++.+.-+= ++.+..-. -+.||+=+.+- .... -..|||-+- .|-+.=.+
T Consensus 108 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~---------~~~~-----~~~R~ySi~s~~~~~~l~~~v 173 (338)
T 1krh_A 108 HFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVT---------LPGT-----TETRSYSFSSQPGNRLTGFVV 173 (338)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEE---------CTTS-----SCEEEEECCSCTTCSEEEEEE
T ss_pred EEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEE---------cCCC-----CccccccccCCCCCCeEEEEE
Confidence 3578899998886432 33344322 24555533321 1110 123454442 34444445
Q ss_pred Ee-cCC-ceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 285 LV-PGG-KTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 285 ~~-Pgg-kT~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
.. |+| -|+|| +.|+.||+|.+-...|+... .-..+|+++|=+
T Consensus 174 k~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~~------~~~~~~~vliag 218 (338)
T 1krh_A 174 RNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYL------RDVKRPVLMLAG 218 (338)
T ss_dssp ECCTTCHHHHHHHTTCCTTCEEEEEEEECSCSC------CCCSSCEEEEEE
T ss_pred EEcCCCCchhhHhhccCCCCEEEEECCccceEe------CCCCceEEEEEc
Confidence 44 544 59999 69999999999888887532 112488888743
No 168
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=52.75 E-value=18 Score=27.17 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++......+ ......+++.|+++++.+|-+++++.+.
T Consensus 82 ~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 121 (140)
T 3cg0_A 82 NLPIIFITSSQD-VETFQRAKRVNPFGYLAKPVAADTLHRS 121 (140)
T ss_dssp CCCEEEEECCCC-HHHHHHHHTTCCSEEEEESCCHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHhcCCCEEEeCCCCHHHHHHH
Confidence 445665554433 4456678899999999999999887654
No 169
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=52.75 E-value=68 Score=23.74 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=45.3
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
..+.++.-..... ...+.++++..-.. ..--.++..+. .....++...... +......+++.|++|.+.+|-+++
T Consensus 33 ~~~~~~~~~~~~~-~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (126)
T 1dbw_A 33 HQSAEAFLAFAPD-VRNGVLVTDLRMPD-MSGVELLRNLGDLKINIPSIVITGHG-DVPMAVEAMKAGAVDFIEKPFEDT 109 (126)
T ss_dssp ESCHHHHHHHGGG-CCSEEEEEECCSTT-SCHHHHHHHHHHTTCCCCEEEEECTT-CHHHHHHHHHTTCSEEEESSCCHH
T ss_pred eCCHHHHHHHHhc-CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHhCHHHheeCCCCHH
Confidence 4555543332222 34566777543221 12223343332 2344566655443 345667889999999999999998
Q ss_pred HHHHH
Q 017770 195 AVLAL 199 (366)
Q Consensus 195 ev~~l 199 (366)
++.+.
T Consensus 110 ~l~~~ 114 (126)
T 1dbw_A 110 VIIEA 114 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 170
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=51.92 E-value=50 Score=24.41 Aligned_cols=66 Identities=8% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..-..++..+.. ....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 51 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (129)
T 1p6q_A 51 PHHLVISDFNMPK-MDGLGLLQAVRANPATKKAAFIILTAQ-GDRALVQKAAALGANNVLAKPFTIEKMKAA 120 (129)
T ss_dssp CCSEEEECSSSCS-SCHHHHHHHHTTCTTSTTCEEEECCSC-CCHHHHHHHHHHTCSCEECCCSSHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcCccccCCCEEEEeCC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 4567777432111 122234555543 23456555444 344566788899999999999999887653
No 171
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=51.77 E-value=58 Score=28.43 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=58.8
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCC-CCCeeeecCCceeEEEe
Q 017770 214 SLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIA-SRPFRVNAGPVHAYVLV 286 (366)
Q Consensus 214 ~L~~atVt~V~~vGmGD-RVCVDtcS-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva-~RPFRVNAGaVHaYv~~ 286 (366)
...+++|++++.+.-.= ++.+..-. -+.||+=+.|--... .+....||.. +-|= +.|-++=.|..
T Consensus 11 ~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~~~--~~~~~~l~vk~ 82 (270)
T 2cnd_A 11 GRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIE------GKLCMRAYTPTSMVD--EIGHFDLLVKV 82 (270)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTT--CCSEEEEEEEC
T ss_pred ceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeC------CcEEEEeeccCCCcc--CCCEEEEEEEE
Confidence 34678999998886532 34444321 246666443311101 1112234421 1121 13445555554
Q ss_pred ----------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE-----eccceEEEEE
Q 017770 287 ----------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI-----ESRPLILVEA 332 (366)
Q Consensus 287 ----------P-ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKI-----E~RPLlLIeA 332 (366)
+ |.-|+||.+|+.||+|.+-...|+.....-|.-.+ ..+|+++|=+
T Consensus 83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliag 144 (270)
T 2cnd_A 83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICG 144 (270)
T ss_dssp CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEE
T ss_pred eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEec
Confidence 2 44799999999999999988877621100011222 2578888744
No 172
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=51.46 E-value=47 Score=25.67 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. +.--.++..++. ....++......+ ...+..+++.|++|.+.+|-+++++.+.
T Consensus 61 ~~dlillD~~lp~-~~g~~l~~~l~~~~~~~~~piiils~~~~-~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 130 (149)
T 1i3c_A 61 RPNLILLDLNLPK-KDGREVLAEIKQNPDLKRIPVVVLTTSHN-EDDVIASYELHVNCYLTKSRNLKDLFKM 130 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHCTTTTTSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhCcCcCCCeEEEEECCCC-hHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 4577777433211 122233444332 2345665554433 3445688899999999999999887654
No 173
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=51.22 E-value=16 Score=26.76 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=38.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+.. ....++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 45 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (121)
T 1zh2_A 45 KPDLIILDLGLPD-GDGIEFIRDLRQWSAVPVIVLSARSE-ESDKIAALDAGADDYLSKPFGIGELQAR 111 (121)
T ss_dssp CCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhCCCCcEEEEECCCC-HHHHHHHHhcCCCeEEeCCcCHHHHHHH
Confidence 4566777432111 111233443332 2345555554433 3455678899999999999999887653
No 174
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=51.15 E-value=23 Score=35.03 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=42.5
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017770 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
++.-+.+.+.+..+.+.. ...+.++++...-.--.+.++|.++... +..|++ .+.+.++|+.+. +.|+|+|++
T Consensus 137 v~~~v~~~~~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~---~aGAD~I~v 211 (400)
T 3ffs_A 137 VGAAIGVNEIERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI---ENGADGIKV 211 (400)
T ss_dssp CEEEECCC-CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHH---HTTCSEEEE
T ss_pred EEeecCCCHHHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHH---HcCCCEEEE
Confidence 444444444333333322 3578888754421111224455555433 567875 899999998755 679999999
Q ss_pred e
Q 017770 189 K 189 (366)
Q Consensus 189 ~ 189 (366)
-
T Consensus 212 G 212 (400)
T 3ffs_A 212 G 212 (400)
T ss_dssp C
T ss_pred e
Confidence 3
No 175
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=51.09 E-value=16 Score=33.73 Aligned_cols=126 Identities=12% Similarity=0.170 Sum_probs=66.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~-~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.+.|+|.+.|..+.- +..+.+. .+++.|.+.+..+.-.++. +.+.......|+|++
T Consensus 99 ~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~--------------~ir~~G~k~Gvalnp~Tp~--e~l~~~l~~vD~Vlv 162 (246)
T 3inp_A 99 DALIESFAKAGATSIVFHPEASEHIDRSLQ--------------LIKSFGIQAGLALNPATGI--DCLKYVESNIDRVLI 162 (246)
T ss_dssp HHHHHHHHHHTCSEEEECGGGCSCHHHHHH--------------HHHTTTSEEEEEECTTCCS--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHHHH--------------HHHHcCCeEEEEecCCCCH--HHHHHHHhcCCEEEE
Confidence 4578899999999999876521 1111111 1234466666554333332 333333345788876
Q ss_pred eC-----CCCeeee--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHH
Q 017770 139 DL-----PDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALK 200 (366)
Q Consensus 139 ~~-----~DW~iIP--lENl---iA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~ev~~l~ 200 (366)
-. .+-+.|| +|.| -+... +.+ -.+.+-.-.. .+.+-++.+.|+|.+|.- .+|+ +.+++++
T Consensus 163 MsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~-~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~ 240 (246)
T 3inp_A 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRD-ILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMR 240 (246)
T ss_dssp ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSC-CEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred eeecCCCCCcccchHHHHHHHHHHHHHHhcCCC-eeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHH
Confidence 33 3444566 3332 11111 111 2233333332 245667899999999974 4677 4466666
Q ss_pred Hhh
Q 017770 201 EYF 203 (366)
Q Consensus 201 ~~~ 203 (366)
+.+
T Consensus 241 ~~i 243 (246)
T 3inp_A 241 DEL 243 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 176
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=51.06 E-value=1.5e+02 Score=27.22 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=59.8
Q ss_pred EEEEeCchhHHHHHHHhCCcEE-EEcC---c-----------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe
Q 017770 53 VWIWTESKQVMTAAVERGWNTF-VFLS---E-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (366)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~~-vv~~---~-----------~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v 117 (366)
+..+....+++..+.+.|++.+ ++.+ . +.+..+++.+. -+.+ ..+.+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~----------------~~iP--v~~k~ 85 (305)
T 2nv1_A 24 VIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA----------------VSIP--VMAKA 85 (305)
T ss_dssp EEEEESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH----------------CSSC--EEEEE
T ss_pred eeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh----------------CCCC--EEecc
Confidence 4456677899999999999999 5531 0 11222222111 1111 12223
Q ss_pred cC--hhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcc--cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 118 ST--PQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF--QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 118 ~~--~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~--q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.. .++.+.+.. ..++.|+ ...+ ++.+.+...+ +.-+..++..+.+.+||..+ ++.|+|-|.+.
T Consensus 86 r~g~~~~~~~~~a--~GAd~V~-~~~~---l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a---~~~Gad~V~~~ 152 (305)
T 2nv1_A 86 RIGHIVEARVLEA--MGVDYID-ESEV---LTPADEEFHLNKNEYTVPFVCGCRDLGEATRR---IAEGASMLRTK 152 (305)
T ss_dssp CTTCHHHHHHHHH--HTCSEEE-ECTT---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHHH---HHTTCSEEEEC
T ss_pred cccchHHHHHHHH--CCCCEEE-Eecc---CCHHHHHHHHHHhccCCcEEEEeCCHHHHHHH---HHCCCCEEEec
Confidence 22 333333322 4567775 2222 2333322211 12345789999999998766 48899998883
No 177
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=51.03 E-value=28 Score=26.38 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++...... +......+++.|+++++.+|-+++++...
T Consensus 87 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 126 (135)
T 3snk_A 87 TVPLIAVSDEL-TSEQTRVLVRMNASDWLHKPLDGKELLNA 126 (135)
T ss_dssp TCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeCCC-CHHHHHHHHHcCcHhhccCCCCHHHHHHH
Confidence 44566555443 34456778999999999999999877653
No 178
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=50.95 E-value=11 Score=31.81 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=40.7
Q ss_pred eeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecc
Q 017770 273 FRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR 325 (366)
Q Consensus 273 FRVNAGaVHaY----v~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~R 325 (366)
..|+.||+.+. =++|-|=+..=.+.+.||.|.|++.+|+ ..-+|++..-..
T Consensus 73 v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~--~ia~G~~~~ss~ 127 (153)
T 1q7h_A 73 VTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGY--FIAVGMAEMDAG 127 (153)
T ss_dssp EEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSC--EEEEEEESSCHH
T ss_pred EEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEECCCC--EEEEEEEecCHH
Confidence 78999998765 4556677887789999999999999774 488888876443
No 179
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=50.91 E-value=16 Score=32.41 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
++.+.+|+|| .+++.+...++.|+|+|+.+..
T Consensus 205 ~~G~~v~~wTvn~~~~~~~l~~~GvdgI~TD~p 237 (247)
T 2otd_A 205 DAGLRILVYTVNKPQHAAELLRWGVDCICTDAI 237 (247)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHHTCSEEEESCT
T ss_pred HCCCEEEEEccCCHHHHHHHHHcCCCEEEeCCH
Confidence 4568899999 6799999999999999998653
No 180
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=50.03 E-value=15 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+-+.|++|| .+++.|...++.|+|+|+.+..
T Consensus 266 ~~Gl~V~~WTVn~~~~~~~l~~~GVDgIiTD~P 298 (313)
T 3l12_A 266 DLGLIVLTWTVNEPEDIRRMATTGVDGIVTDYP 298 (313)
T ss_dssp HTTCEEEEBCCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCH
Confidence 4567899999 6799999999999999998654
No 181
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=49.92 E-value=44 Score=28.66 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=59.3
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~--------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (366)
..+.+..+++.|+|.+.+.... .+..+.+.+. + .|+.+ .+.+.++++...+..
T Consensus 77 ~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~-------------~--~~~~v--~~~~~t~~e~~~~~~-- 137 (223)
T 1y0e_A 77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH-------------A--PNVEI--MADIATVEEAKNAAR-- 137 (223)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHH-------------C--TTSEE--EEECSSHHHHHHHHH--
T ss_pred cHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHh-------------C--CCceE--EecCCCHHHHHHHHH--
Confidence 4567888999999998876532 1222222221 0 03333 346677777555332
Q ss_pred CCCCeEEEeCCCCe--------eee-hhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 131 GQAENIVIDLPDWQ--------VIP-AENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 131 ~~~~~vvv~~~DW~--------iIP-lENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+++.+.....+ .-| ++ ++.++. ..+..+++ .+.|.++++.++ +.|+|||++-+.
T Consensus 138 ~G~d~i~~~~~g~t~~~~~~~~~~~~~~-~~~~~~~~~~ipvia~GGI~~~~~~~~~~---~~Gad~v~vG~a 206 (223)
T 1y0e_A 138 LGFDYIGTTLHGYTSYTQGQLLYQNDFQ-FLKDVLQSVDAKVIAEGNVITPDMYKRVM---DLGVHCSVVGGA 206 (223)
T ss_dssp TTCSEEECTTTTSSTTSTTCCTTHHHHH-HHHHHHHHCCSEEEEESSCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred cCCCEEEeCCCcCcCCCCCCCCCcccHH-HHHHHHhhCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 34677765321111 111 22 233221 12345665 356778777665 569999998754
No 182
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=49.53 E-value=16 Score=27.32 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
..+.++++..-+.. .--.++..+.. .+..++......+ ......+++.|+++.+.+|-+++++.+
T Consensus 46 ~~dlii~D~~~p~~-~g~~~~~~lr~~~~~~ii~~t~~~~-~~~~~~~~~~ga~~~l~KP~~~~~l~~ 111 (120)
T 3f6p_A 46 QPDLILLDIMLPNK-DGVEVCREVRKKYDMPIIMLTAKDS-EIDKVIGLEIGADDYVTKPFSTRELLA 111 (120)
T ss_dssp CCSEEEEETTSTTT-HHHHHHHHHHTTCCSCEEEEEESSC-HHHHHHHHHTTCCEEEEESCCHHHHHH
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCEEEEECCCC-hHHHHHHHhCCcceeEcCCCCHHHHHH
Confidence 45667775432211 11123333222 2344554443332 234557889999999999999987754
No 183
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=48.88 E-value=14 Score=33.00 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
+|..+. +.++++++..+-++++ .+++.++++. .++.|+|||+ ||+|+.+.+
T Consensus 194 ~~~~~~-~~~v~~~~~~G~~v~~WTvn~~~~~~~---l~~~GVdgIi--TD~P~~~~~ 245 (252)
T 3qvq_A 194 HQSFFD-VQQVSDIKAAGYKVLAFTINDESLALK---LYNQGLDAVF--SDYPQKIQS 245 (252)
T ss_dssp EGGGCC-HHHHHHHHHTTCEEEEECCCCHHHHHH---HHHTTCCEEE--ESSHHHHHH
T ss_pred chhhCC-HHHHHHHHHCCCEEEEEcCCCHHHHHH---HHHcCCCEEE--eCCHHHHHH
Confidence 344444 3566666666666655 4566666554 5679999998 888887654
No 184
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=48.72 E-value=23 Score=30.79 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=56.3
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC---eeeehhhhhhcccC-CCceEEE--
Q 017770 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW---QVIPAENIVASFQG-SGKTVFA-- 164 (366)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW---~iIPlENliA~~q~-~~~~l~a-- 164 (366)
.|..|.+.+|..+.. +|+. ..+-...++.++.+.... ..++++-+...|. ..++. .+|.++.. .+..++.
T Consensus 5 iip~id~~~g~~V~~~~g~~-~~~~~~~d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~g 81 (244)
T 2y88_A 5 LLPAVNVVEGRAVRLVQGKA-GSQTEYGSAVDAALGWQR-DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSG 81 (244)
T ss_dssp EEEEEEEETTEEEEEETTEE-EEEEEEEEHHHHHHHHHH-TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEEEEeECCEEEEeecccc-ccceecCCHHHHHHHHHH-cCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEEC
Confidence 355577788877753 3322 222223355544443332 4578888865432 22344 55555422 2334444
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~ 201 (366)
-+.++++++.+ ++.|+|+|++... +|..+.++.+
T Consensus 82 gi~~~~~~~~~---l~~Gad~V~lg~~~l~~p~~~~~~~~ 118 (244)
T 2y88_A 82 GIRDDESLAAA---LATGCARVNVGTAALENPQWCARVIG 118 (244)
T ss_dssp SCCSHHHHHHH---HHTTCSEEEECHHHHHCHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHcCCCEEEECchHhhChHHHHHHHH
Confidence 35677775555 5679999999985 4444444433
No 185
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=48.68 E-value=22 Score=30.77 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=33.5
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~-P-ggkT~YLSEL~sG~eVLvV-d~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|-+.=|+.. | |.-|+||.+|+.||+|.+- ...|... .-.. -..+|+++|=+
T Consensus 61 ~~l~~~v~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~---l~~~-~~~~~~vliag 114 (248)
T 1fdr_A 61 PDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFV---LDEV-PHCETLWMLAT 114 (248)
T ss_dssp SSEEEEEECCTTCSSHHHHHTCCTTCEEEEESSCBCCCS---GGGS-CCCSEEEEEEE
T ss_pred CcEEEEEEEeCCCchhhHHHhCCCcCEEEEecCCcceeE---cCCC-CCCceEEEEEe
Confidence 555556654 5 5568999999999999998 7777631 0000 01577887744
No 186
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=48.19 E-value=17 Score=32.49 Aligned_cols=32 Identities=0% Similarity=-0.032 Sum_probs=26.8
Q ss_pred CCCcEEEEEe-CchhHHHH-HHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTA-AVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~-ALEsG~~~~vv~~~ 79 (366)
.+.+.+|+|+ .+++.+.. .++.|+|+|+.+..
T Consensus 192 ~~G~~v~~wTvn~~~~~~~~l~~~GvdgIiTD~p 225 (248)
T 1zcc_A 192 KAGLEIMVYYGGDDMAVHREIATSDVDYINLDRP 225 (248)
T ss_dssp HHTCEEEEECCCCCHHHHHHHHHSSCSEEEESCH
T ss_pred HCCCEEEEECCCCHHHHHHHHHHcCCCEEEECCH
Confidence 4567899999 57888999 99999999998653
No 187
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=47.94 E-value=14 Score=32.86 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=31.1
Q ss_pred hhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 149 ENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 149 ENliA~~q~~~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+|++++..+-++++- +++.++++. .++.|+|||+ ||+|+.+.++
T Consensus 186 ~~~v~~~~~~G~~v~~WTVn~~~~~~~---l~~~GVdgIi--TD~P~~~~~~ 232 (238)
T 3no3_A 186 PDWVKDCKVLGMTSNVWTVDDPKLMEE---MIDMGVDFIT--TDLPEETQKI 232 (238)
T ss_dssp TTHHHHHHHTTCEEEEECCCSHHHHHH---HHHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHH---HHHcCCCEEE--CCCHHHHHHH
Confidence 35677666666665543 566666554 5678999988 7889876553
No 188
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=47.91 E-value=80 Score=23.75 Aligned_cols=81 Identities=11% Similarity=0.180 Sum_probs=46.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-.. +.--.++..+. .....++......+ ......+++.|++|.+.+|-++
T Consensus 34 ~~~~~~~al~~~~~-~~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 110 (133)
T 3b2n_A 34 DTDNGLDAMKLIEE-YNPNVVILDIEMPG-MTGLEVLAEIRKKHLNIKVIIVTTFKR-PGYFEKAVVNDVDAYVLKERSI 110 (133)
T ss_dssp EESCHHHHHHHHHH-HCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCCC-HHHHHHHHHTTCSEEEETTSCH
T ss_pred EcCCHHHHHHHHhh-cCCCEEEEecCCCC-CCHHHHHHHHHHHCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEECCCCH
Confidence 34555443332221 34677777433211 22223344332 23456666655433 3456788899999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 111 ~~L~~~ 116 (133)
T 3b2n_A 111 EELVET 116 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 189
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=47.74 E-value=46 Score=25.15 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=45.7
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++. -.. ..--.++..+. .....++...... +......+++.|+++++.+|-++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~ 108 (142)
T 2qxy_A 33 WAKNEQEAFTFLRR-EKIDLVFVDV-FEG-EESLNLIRRIREEFPDTKVAVLSAYV-DKDLIINSVKAGAVDYILKPFRL 108 (142)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEEEC-TTT-HHHHHHHHHHHHHCTTCEEEEEESCC-CHHHHHHHHHHTCSCEEESSCCH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeC-CCC-CcHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHCCcceeEeCCCCH
Confidence 34555543332222 3567888843 211 11112333332 2245666665543 34566788999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 109 ~~l~~~ 114 (142)
T 2qxy_A 109 DYLLER 114 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 190
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=47.73 E-value=8.1 Score=29.72 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-..-..--.++..+.. ....++......++ .....+++.|+++++.+|-+++++.+.
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~-~~~~~~~~~g~~~~l~KP~~~~~l~~~ 117 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEP-AVVEKIRSVTAYGYVMKSATEQVLITI 117 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSC-CCCGGGGGSCEEEEEETTCCHHHHHHH
T ss_pred CCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCH-HHHHHHHhCCCcEEEeCCCCHHHHHHH
Confidence 46777775432211112223333221 24456665554433 345678899999999999999887654
No 191
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=46.80 E-value=74 Score=23.08 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-.. ..--.++.++. .....++......+ ......+++.|+++.+.+|-++
T Consensus 29 ~~~~~~~a~~~~~~-~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kp~~~ 105 (121)
T 2pl1_A 29 DAEDAKEADYYLNE-HIPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILVLTARES-WQDKVEVLSAGADDYVTKPFHI 105 (121)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEEEESCCC-HHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEEEecCCC-HHHHHHHHHcCccceEECCCCH
Confidence 44555543332222 34677777433221 12223444433 22445666554433 3455788999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++...
T Consensus 106 ~~l~~~ 111 (121)
T 2pl1_A 106 EEVMAR 111 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877553
No 192
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=46.75 E-value=48 Score=32.79 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=64.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~--~----~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
..+.+..++|.|+|.+.+...+ . +..+.+.+.- | +.++. ...+.+.++.+.+.. ..
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~---~------------~~pvi-~~~v~t~~~a~~l~~--aG 317 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY---P------------HLQVI-GGNVVTAAQAKNLID--AG 317 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC---T------------TCEEE-EEEECSHHHHHHHHH--HT
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC---C------------CCceE-ecccchHHHHHHHHH--cC
Confidence 4678888999999999884321 1 2222222210 0 22221 125688887655544 35
Q ss_pred CCeEEEeCC-C----------Ce---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 133 AENIVIDLP-D----------WQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 133 ~~~vvv~~~-D----------W~---iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
++.+++... + |- ...++.+-+..+..+..|++ .+.+.+++..++ ..|+|+|.+-..
T Consensus 318 ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kal---a~GAd~V~iG~~ 389 (514)
T 1jcn_A 318 VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKAL---ALGASTVMMGSL 389 (514)
T ss_dssp CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH---HcCCCeeeECHH
Confidence 888888220 1 22 22233333333333456888 788888887665 469999999774
No 193
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=46.63 E-value=88 Score=27.27 Aligned_cols=107 Identities=11% Similarity=0.174 Sum_probs=57.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 017770 58 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~~---------~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~ 128 (366)
+..+++..+.+.|+|.+.+...+. +.++++. ..--|+.+.+ -|.++++.+.+..
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~--~~~ipvi~~G---------------gi~~~~~~~~~~~ 93 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS--EFAEHIQIGG---------------GIRSLDYAEKLRK 93 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG--GGGGGEEEES---------------SCCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH--hcCCcEEEEC---------------CCCCHHHHHHHHH
Confidence 346788999999999988864221 1222221 1111333332 3577888777554
Q ss_pred ccCCCCeEEEeCCCCeeee----hhhhhhcccCCCceEE--EEcC---------------CHHHHHHHHHHhhcccCeEE
Q 017770 129 ADGQAENIVIDLPDWQVIP----AENIVASFQGSGKTVF--AISK---------------TPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 129 ~~~~~~~vvv~~~DW~iIP----lENliA~~q~~~~~l~--a~v~---------------~~~eA~~al~~LE~G~DGVv 187 (366)
..++.+++-.. .++ ++.+ .++. .+++ ..++ +.. +.+..+.+.|++.|+
T Consensus 94 --~Gad~V~lg~~---~l~~p~~~~~~-~~~g---~~i~~~~d~~~~~v~~~g~~~~~~~~~~--e~~~~~~~~G~~~i~ 162 (241)
T 1qo2_A 94 --LGYRRQIVSSK---VLEDPSFLKSL-REID---VEPVFSLDTRGGRVAFKGWLAEEEIDPV--SLLKRLKEYGLEEIV 162 (241)
T ss_dssp --TTCCEEEECHH---HHHCTTHHHHH-HTTT---CEEEEEEEEETTEECCTTCSSCSCCCHH--HHHHHHHTTTCCEEE
T ss_pred --CCCCEEEECch---HhhChHHHHHH-HHcC---CcEEEEEEecCCEEEECCceecCCCCHH--HHHHHHHhCCCCEEE
Confidence 24788888332 222 3333 3321 2332 2231 333 334556789999999
Q ss_pred EecCC
Q 017770 188 LKVED 192 (366)
Q Consensus 188 l~~~d 192 (366)
+++.+
T Consensus 163 ~t~~~ 167 (241)
T 1qo2_A 163 HTEIE 167 (241)
T ss_dssp EEETT
T ss_pred EEeec
Confidence 97743
No 194
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=46.35 E-value=41 Score=25.46 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q----~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-.........+.+|++..-..-..--.++..+. .....++...... +......+++.|+++++.+|-
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~KP~ 112 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD-NPGYRHAALKFKVSDYILKPY 112 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC-CHHHHHHHHHSCCSEEEESSC
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC-CHHHHHHHHHcCCCEEEECCC
Confidence 34555543332222134677777332110111122333332 2345666655543 334566788999999999999
Q ss_pred CHHHHHHHH
Q 017770 192 DVKAVLALK 200 (366)
Q Consensus 192 d~~ev~~l~ 200 (366)
+++++.+.-
T Consensus 113 ~~~~l~~~i 121 (140)
T 3lua_A 113 PTKRLENSV 121 (140)
T ss_dssp CTTHHHHHH
T ss_pred CHHHHHHHH
Confidence 988776543
No 195
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=46.16 E-value=62 Score=26.05 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=55.5
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhcc-ceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWS-TIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~-~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
..+.....+.|++-++++.+ .+..+.+. .. |.. .......+++.++.+ ....++.+|+
T Consensus 32 ~~la~~L~~~g~~V~vid~~-~~~~~~~~~~~-----------------g~~-~~~~d~~~~~~l~~~--~~~~ad~Vi~ 90 (155)
T 2g1u_A 32 SLIANLASSSGHSVVVVDKN-EYAFHRLNSEF-----------------SGF-TVVGDAAEFETLKEC--GMEKADMVFA 90 (155)
T ss_dssp HHHHHHHHHTTCEEEEEESC-GGGGGGSCTTC-----------------CSE-EEESCTTSHHHHHTT--TGGGCSEEEE
T ss_pred HHHHHHHHhCCCeEEEEECC-HHHHHHHHhcC-----------------CCc-EEEecCCCHHHHHHc--CcccCCEEEE
Confidence 55667777889876666543 33443332 21 110 011111233333322 1345788888
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
...+......=..++.......++++.+++.+..+.+. +.|+| ++.|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~---~~G~~--vi~p~~ 139 (155)
T 2g1u_A 91 FTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFE---ENGIK--TICPAV 139 (155)
T ss_dssp CSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHH---TTTCE--EECHHH
T ss_pred EeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HCCCc--EEcHHH
Confidence 66554322111112221133568999999999887533 48999 556553
No 196
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=45.84 E-value=39 Score=29.83 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=57.6
Q ss_pred EEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-
Q 017770 217 KATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV- 286 (366)
Q Consensus 217 ~atVt~V~~vGmG-DRVCVDtcS---ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~~- 286 (366)
+++|++++.+.-. -|+.+..-. -+.||+=+.+ +-.. ......|||-+- .|-+.=.+..
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l----------~~~~--~~~~~~R~ySi~s~~~~~~~l~~~vk~~ 74 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHL----------AVPN--GAMLLRRPISISSWDKRAKTCTILYRIG 74 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEE----------CCSC--TTCCSCEEEECCEEETTTTEEEEEEECC
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEE----------EcCC--CCceeeEEEEeeeecCCCCEEEEEEEEe
Confidence 5788888877532 133333322 2344443222 2111 112456777652 3556666666
Q ss_pred -cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe--ccceEEEEE
Q 017770 287 -PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE--SRPLILVEA 332 (366)
Q Consensus 287 -PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE--~RPLlLIeA 332 (366)
.|.-|+||..|+.||+|.+-...|+.-. ..-. .+|++||=+
T Consensus 75 ~~G~~S~~l~~l~~Gd~v~v~gP~G~~f~-----l~~~~~~~~~lliag 118 (262)
T 1ep3_B 75 DETTGTYKLSKLESGAKVDVMGPLGNGFP-----VAEVTSTDKILIIGG 118 (262)
T ss_dssp CTTSHHHHHHTCCTTCEEEEEEEESBCCC-----CTTCCTTSEEEEEEE
T ss_pred cCCchHHHHhcCCCCCEEEEEcccCCCcc-----CCCccCCCeEEEEEC
Confidence 6888999999999999999887776210 1111 578888754
No 197
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=45.72 E-value=55 Score=25.22 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=45.9
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.+|++..-.. ..--.++..+.. ....++......+ ......+++.|++|++.+|-++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~ 112 (153)
T 3cz5_A 36 EAADAGEAYRLYRE-TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAARILIFTMHQG-SAFALKAFEAGASGYVTKSSDP 112 (153)
T ss_dssp EESSHHHHHHHHHT-TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCCS-HHHHHHHHHTTCSEEEETTSCT
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCeEEEEECCCC-HHHHHHHHHCCCcEEEecCCCH
Confidence 34555553333222 34677777433211 122233333322 2446666655433 4566788999999999999998
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 113 ~~L~~~ 118 (153)
T 3cz5_A 113 AELVQA 118 (153)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 877654
No 198
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=45.70 E-value=55 Score=25.18 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++......+ ......+++.|+++++.+|-+++++.+.
T Consensus 89 ~~pii~~t~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 128 (152)
T 3heb_A 89 RSPVVILTTTDD-QREIQRCYDLGANVYITKPVNYENFANA 128 (152)
T ss_dssp TSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHHCCCcEEEeCCCCHHHHHHH
Confidence 445665555443 3445678899999999999999877654
No 199
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=45.35 E-value=1.1e+02 Score=29.72 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=61.7
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc--hh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN--QQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~--~~-~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (366)
...+.+..++|.|+|.+.++..+ .+ ..+.+..+....| +.++. ...|.++++...+.. ..+|
T Consensus 100 ~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~------------~~~Vi-~G~V~T~e~A~~a~~--aGaD 164 (361)
T 3r2g_A 100 NELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLG------------SRCIM-AGNVATYAGADYLAS--CGAD 164 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHT------------TCEEE-EEEECSHHHHHHHHH--TTCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcC------------CCeEE-EcCcCCHHHHHHHHH--cCCC
Confidence 35789999999999987775321 11 1111111110000 22221 125788888555543 4689
Q ss_pred eEEEeCC---CCe-------eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 135 NIVIDLP---DWQ-------VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 135 ~vvv~~~---DW~-------iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
.|++... -++ -+|.=..|.+.-.....|++ .+.+..++..+ |+.|+|+|++-+.
T Consensus 165 ~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~~~di~kA---La~GAd~V~iGr~ 230 (361)
T 3r2g_A 165 IIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKA---LAFGADFVMIGGM 230 (361)
T ss_dssp EEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCSHHHHHHH---HHTTCSEEEESGG
T ss_pred EEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 9988322 111 13422223322221125776 46677776555 5579999998764
No 200
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=45.19 E-value=66 Score=24.17 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=45.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-.... ....+.++++..-.. +.--.++..+. .....++...... +......+++.|++|.+.+|-++
T Consensus 32 ~~~~~~~al~~~~-~~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~ 108 (132)
T 3crn_A 32 IAATAGEGLAKIE-NEFFNLALFXIKLPD-MEGTELLEKAHKLRPGMKKIMVTGYA-SLENSVFSLNAGADAYIMKPVNP 108 (132)
T ss_dssp EESSHHHHHHHHH-HSCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSEEEEEESCC-CHHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEecCCCC-CchHHHHHHHHhhCCCCcEEEEeccc-cHHHHHHHHhccchhhccCCCCH
Confidence 3455544333222 134677777432111 11122333332 2345666655543 34456788999999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 109 ~~L~~~ 114 (132)
T 3crn_A 109 RDLLEK 114 (132)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877553
No 201
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=44.28 E-value=41 Score=26.35 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++...... +......+++.|+++++.+|-++.++.+.
T Consensus 111 ~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 150 (157)
T 3hzh_A 111 NARVIMISALG-KEQLVKDCLIKGAKTFIVKPLDRAKVLQR 150 (157)
T ss_dssp TCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeccC-cHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45666665543 33456778999999999999998877553
No 202
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=44.18 E-value=81 Score=25.92 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=44.5
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...|.++++..-+..=-+ .++..+. .....++...... +......+++.|++|.+.+|-++
T Consensus 36 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~-~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~Ga~~~l~Kp~~~ 112 (215)
T 1a04_A 36 EASNGEQGIELAES-LDPDLILLDLNMPGMNGL-ETLDKLREKSLSGRIVVFSVSN-HEEDVVTALKRGADGYLLKDMEP 112 (215)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTSTTSCHH-HHHHHHHHSCCCSEEEEEECCC-CHHHHHHHHHTTCSEEEETTCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCcHH-HHHHHHHHhCCCCcEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCH
Confidence 34555543332222 246778875442221111 2333322 2244555554432 33456778899999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 113 ~~L~~~ 118 (215)
T 1a04_A 113 EDLLKA 118 (215)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 203
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=44.17 E-value=22 Score=34.41 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=26.5
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 50 ~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
-++|++|| .+.+.|...++.|+|+|+.+..
T Consensus 241 i~~V~vWTVNd~~~m~~l~~~GVDGIITD~P 271 (302)
T 3rlg_A 241 INKVYYWTVDKRSTTRDALDAGVDGIMTNYP 271 (302)
T ss_dssp CSEEEEECCCSHHHHHHHHHTTCSEEEESCH
T ss_pred eEEEEEEeCCCHHHHHHHHHcCCCEEECCCH
Confidence 47899999 6789999999999999998653
No 204
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=43.70 E-value=15 Score=32.83 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+.||+|| .+++.+...++.|+|+|+.+..
T Consensus 209 ~~G~~v~~wTvn~~~~~~~l~~~GvdgIiTD~P 241 (252)
T 2pz0_A 209 KNGVKLFPWTVDRKEDMERMIKAGVDGIITDDP 241 (252)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEEcCCH
Confidence 4567899999 6789999999999999998653
No 205
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=43.24 E-value=96 Score=22.77 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
..+.++++..-.. ..--.++..+.. ....++...... +......+++.|+++.+.+|-+++++.+
T Consensus 49 ~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~ 117 (128)
T 1jbe_A 49 GYGFVISDWNMPN-MDGLELLKTIRAXXAMSALPVLMVTAEA-KKENIIAAAQAGASGYVVKPFTAATLEE 117 (128)
T ss_dssp CCCEEEEESCCSS-SCHHHHHHHHHC--CCTTCCEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCcEEEEecCc-cHHHHHHHHHhCcCceeecCCCHHHHHH
Confidence 4677777543222 222234555443 234566554443 3345678899999999999999987754
No 206
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=42.60 E-value=25 Score=30.72 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=32.1
Q ss_pred CCceeEEEe-cCC-ceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEE-eccceEEEEE
Q 017770 278 GPVHAYVLV-PGG-KTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKI-ESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~-Pgg-kT~YLSEL~sG~eVLvV-d~~G~tR~a~VGRvKI-E~RPLlLIeA 332 (366)
|-+.-|+.. |+| -|+||..|+.||+|.+- ...|.... - .. ..+|+++|=+
T Consensus 61 ~~~~~~i~~~~~G~~s~~l~~l~~Gd~v~v~~gp~G~f~~---~--~~~~~~~~vliag 114 (257)
T 2qdx_A 61 EHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVH---D--DLLPGKHLYLLST 114 (257)
T ss_dssp SEEEEEEECCTTCTTHHHHTTCCTTCEEEECSCCBCSCCG---G--GBCSCSEEEEEEE
T ss_pred CeEEEEEEEeCCCcchhHHHhCCCCCEEEEecCCCCCccC---C--cccCCCeEEEEEe
Confidence 445555544 555 59999999999999986 56665311 0 01 1477887744
No 207
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=42.16 E-value=35 Score=24.95 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
..+.++++..-.. +.--.++..+. .....++......+ ......+++.|+++.+.+|-+++++.+
T Consensus 47 ~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~ 113 (120)
T 1tmy_A 47 KPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVKPFQPSRVVE 113 (120)
T ss_dssp CCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCEEEEECTTC-HHHHHHHHHTTCCEEEESSCCHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeEEEEeCCCC-HHHHHHHHHhCcceeEeCCCCHHHHHH
Confidence 4577777443211 11122333332 23445665554433 345667889999999999999987754
No 208
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=41.12 E-value=89 Score=26.45 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=41.9
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEEEecC---------CHHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIVLKVE---------DVKAVLALK 200 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~e-A~~al~~LE~G~DGVvl~~~---------d~~ev~~l~ 200 (366)
..++.+++...... =-++.++..++..+.+++..+.++++ .+.+..+++.|+|.|.+.+. +.+.+++++
T Consensus 76 ~Gad~v~v~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 76 AGADYVTVLGVTDV-LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TTCSEEEEETTSCH-HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred cCCCEEEEeCCCCh-hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 45788888655310 01355666655555566655433322 24456678899999887653 455666555
Q ss_pred Hhh
Q 017770 201 EYF 203 (366)
Q Consensus 201 ~~~ 203 (366)
+.+
T Consensus 155 ~~~ 157 (211)
T 3f4w_A 155 KVR 157 (211)
T ss_dssp HHC
T ss_pred HHc
Confidence 543
No 209
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=40.49 E-value=52 Score=31.35 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=25.7
Q ss_pred CcEEEEEeCchhHHHHHHHhCCcE-----EEEcCcc
Q 017770 50 PKRVWIWTESKQVMTAAVERGWNT-----FVFLSEN 80 (366)
Q Consensus 50 ~K~vWiw~~~K~~vT~ALEsG~~~-----~vv~~~~ 80 (366)
-..-|.+..+.+.+..|..+|+|. ++++-||
T Consensus 22 l~rs~l~~~~~~~~eka~~~~aD~~~~~~vilDLED 57 (332)
T 3qqw_A 22 LAACEHFAGSEKLIGKAMDLQVEYGPVFDVTCDCED 57 (332)
T ss_dssp CCSEEEEECSHHHHHHHHHHHHHHCSSEEEEEEHHH
T ss_pred ccHHHHhcCCHHHHHHHHhCCCCcCCCCcEEEECCC
Confidence 344688888899999999999998 9988654
No 210
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=40.39 E-value=60 Score=28.74 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=56.7
Q ss_pred HHHHHHhCCcEEEEcCcc----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 63 MTAAVERGWNTFVFLSEN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 63 vT~ALEsG~~~~vv~~~~----~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
+..+.+.|+|++++.... .+..+++-.. ....|. -.++.|.+.++++++... ..+++-+
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~-------------a~~~Gl--~~iv~v~~~~e~~~~~~~--~~~~i~~ 137 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINK-------------CKNLGL--ETIVCTNNINTSKAVAAL--SPDCIAV 137 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHH-------------HHHHTC--EEEEEESSSHHHHHHTTT--CCSEEEE
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHH-------------HHHCCC--eEEEEeCCchHHHHHHhC--CCCEEEE
Confidence 688999999999995310 1111111111 011132 245566666655554432 2345545
Q ss_pred eCCCCe---------eee--hhhhhhcccC--CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEe-----cCCHHHH
Q 017770 139 DLPDWQ---------VIP--AENIVASFQG--SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLK-----VEDVKAV 196 (366)
Q Consensus 139 ~~~DW~---------iIP--lENliA~~q~--~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~ev 196 (366)
+. -|- -.| ++..++.+.. .+..+++. +++.++++. ..+.|+||+++- ++|+.++
T Consensus 138 ~~-~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~---~~~~gaDgvlVGsAi~~~~d~~~~ 211 (219)
T 2h6r_A 138 EP-PELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKA---ALDLGAEGVLLASGVVKAKNVEEA 211 (219)
T ss_dssp CC-CC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHH---HHTTTCCCEEESHHHHTCSSHHHH
T ss_pred Ee-ccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHH---HhhCCCCEEEEcHHHhCcccHHHH
Confidence 43 442 112 3444443322 13344433 466666665 467899999974 5666543
No 211
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=40.10 E-value=16 Score=31.81 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=40.9
Q ss_pred CeeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcC-CCCeeEEeeeeEEEeccce
Q 017770 272 PFRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQ-KGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 272 PFRVNAGaVHaY----v~~PggkT~YLSEL~sG~eVLvVd~-~G~tR~a~VGRvKIE~RPL 327 (366)
-..|+.||+.+- =++|-|-+..=.+++.||.|.|++. +| +..-+|++..-..-|
T Consensus 96 ~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g--~~iavG~~~~ss~e~ 154 (179)
T 3d79_A 96 RVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYG--RPLAIGIALMSGKVM 154 (179)
T ss_dssp EEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTC--CEEEEEEESSCHHHH
T ss_pred EEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCC--eEEEEEEEEcCHHHH
Confidence 367899988653 4556677777789999999999997 56 458899988755444
No 212
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=40.06 E-value=34 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred hhhhhcccCCCc--eEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 149 ENIVASFQGSGK--TVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 149 ENliA~~q~~~~--~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
+.++.+++..+- +|++ .+++.++++.+ ++.|+|||+ ||.|+.+.++
T Consensus 212 ~~~v~~~~~~Glg~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 260 (285)
T 1xx1_A 212 EAIKSRDSANGFINKIYYWSVDKVSTTKAA---LDVGVDGIM--TNYPNVLIGV 260 (285)
T ss_dssp HHHHHHTSTTCCCCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEeeCCCHHHHHHH---HhcCCCEEE--eCCHHHHHHH
Confidence 456666665444 5555 47888877765 578999998 7888876543
No 213
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=39.82 E-value=41 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=26.8
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
.++...... +......+++.|++|.+.+|-+++++.+.
T Consensus 85 ~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 122 (136)
T 1dcf_A 85 LLVALSGNT-DKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122 (136)
T ss_dssp EEEEEESCC-SHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 344444333 33455678899999999999999887653
No 214
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=39.80 E-value=2.1e+02 Score=25.80 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=64.0
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEc----Cc-----------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEE
Q 017770 52 RVWIWTESKQVMTAAVERGWNTFVFL----SE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE 116 (366)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~vv~----~~-----------~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~ 116 (366)
-+..+-...+++..+.+.|++.+.+. .+ +.+..+++.+ .-+.++-....
T Consensus 23 ~~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~----------------~~~~Pvi~~~~ 86 (297)
T 2zbt_A 23 GVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMA----------------AVSIPVMAKVR 86 (297)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHT----------------TCSSCEEEEEE
T ss_pred CeeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHH----------------hcCCCeEEEec
Confidence 34456667899999999999998652 11 1111221111 11233322233
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
+.+.++.+.+.. ..++.+...+ + .++..++.++.+. ..-+.+.+.+++|++. +.+.|+|-|.++
T Consensus 87 ~~~~~~~~~~~~--aGad~v~~~~-~---~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~---a~~~Gad~I~v~ 152 (297)
T 2zbt_A 87 IGHFVEAMILEA--IGVDFIDESE-V---LTPADEEHHIDKWKFKVPFVCGARNLGEALR---RIAEGAAMIRTK 152 (297)
T ss_dssp TTCHHHHHHHHH--TTCSEEEEET-T---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHH---HHHTTCSEEEEC
T ss_pred cCCHHHHHHHHH--CCCCEEeeeC-C---CChHHHHHHHHHhCCCceEEeecCCHHHHHH---HHHcCCCEEEEc
Confidence 444555454433 4577773322 1 2334555554432 3456777899999876 478999998766
No 215
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=39.76 E-value=27 Score=31.90 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=41.3
Q ss_pred eeeecCCceeEE----EecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 017770 273 FRVNAGPVHAYV----LVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (366)
Q Consensus 273 FRVNAGaVHaYv----~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPL 327 (366)
-.|+.||+.+.. ++|-|=+.+=.+++.||.|.|+|.+|+ .+-+|++..-..-|
T Consensus 78 VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~--~IAvG~a~~sS~Ei 134 (195)
T 3zv0_C 78 IVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGE--AIAVAIAQMSTVDL 134 (195)
T ss_dssp EEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCC--EEEEEEESSCHHHH
T ss_pred EEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCC--EEEEEEEcCCHHHH
Confidence 467888887642 556677888899999999999999986 57789887765544
No 216
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.57 E-value=26 Score=26.01 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=40.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q----~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
..+.++++..-.. ..--.++..+. .....++......++.. ...++.|+++++.+|-+++++.+...
T Consensus 47 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~L~~~i~ 117 (127)
T 3i42_A 47 GYDAVFIDLNLPD-TSGLALVKQLRALPMEKTSKFVAVSGFAKNDL--GKEACELFDFYLEKPIDIASLEPILQ 117 (127)
T ss_dssp CCSEEEEESBCSS-SBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC--CHHHHHHCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhhccCCCCEEEEECCcchhH--HHHHHHhhHHheeCCCCHHHHHHHHH
Confidence 4677777543221 11122333322 33456777666665544 67889999999999999998765443
No 217
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=39.49 E-value=19 Score=32.21 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~~ 79 (366)
++...||+|| .+++.+...++.|+|+|+.+..
T Consensus 234 ~~Gl~v~~wTvn~~~~~~~l~~~GvdgIiTD~P 266 (272)
T 3ch0_A 234 KLGMRVIPWTVNTKEEIETLISLGVDGIITDYP 266 (272)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESCG
T ss_pred HcCCEEEEeccCCHHHHHHHHHcCCCEEEeCCH
Confidence 4567899999 6788899999999999998653
No 218
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=39.37 E-value=19 Score=32.81 Aligned_cols=31 Identities=16% Similarity=-0.055 Sum_probs=27.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.|++|| .+++.+...++.|+|+|+.+.
T Consensus 239 ~~G~~v~~wTvn~~~~~~~l~~~GVdgIiTD~ 270 (287)
T 2oog_A 239 DLGFIVHPYTVNEKADMLRLNKYGVDGVFTNF 270 (287)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC
T ss_pred HCCCeEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 4567899999 679999999999999999865
No 219
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=39.05 E-value=41 Score=28.06 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCCCCCeee-ecCCce-------------eEEEecCCceeeeeeccCCCeEEEE
Q 017770 266 NYIASRPFRV-NAGPVH-------------AYVLVPGGKTCYLSELKSGKEVIVV 306 (366)
Q Consensus 266 ~Yva~RPFRV-NAGaVH-------------aYv~~PggkT~YLSEL~sG~eVLvV 306 (366)
=|+|.+|||| .|-... -++.+--++|=||=.+.+|+.+-..
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~ 61 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLL 61 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEE
Confidence 3899999998 331111 1233333555666566666544443
No 220
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=38.78 E-value=1.2e+02 Score=26.49 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=60.8
Q ss_pred CchhHHHHHHHhCCcEEEEc--Ccc--------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhc
Q 017770 58 ESKQVMTAAVERGWNTFVFL--SEN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~--~~~--------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (366)
.-.+.+..+.+.|+|.+=+. ..+ .+.++++.++. .+...+-+-+.++++.-..+
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~----------------~~~~~v~lmv~d~~~~i~~~ 83 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT----------------KAYLDCHLMVTNPSDYVEPL 83 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC----------------CSEEEEEEESSCGGGGHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc----------------CCcEEEEEEecCHHHHHHHH
Confidence 34678899999999975333 110 23444443331 12333444556664432223
Q ss_pred cccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhc--ccCeEEEec
Q 017770 128 PADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQ--GLGGIVLKV 190 (366)
Q Consensus 128 ~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~--G~DGVvl~~ 190 (366)
.. ..++.+.+....-. -|++..+.++.+.+.++...+ .+..|+ ....++. |+|-|++.+
T Consensus 84 ~~-agad~v~vH~~~~~-~~~~~~~~~i~~~g~~igv~~~p~t~~e~--~~~~~~~~~~~d~vl~~s 146 (228)
T 1h1y_A 84 AK-AGASGFTFHIEVSR-DNWQELIQSIKAKGMRPGVSLRPGTPVEE--VFPLVEAENPVELVLVMT 146 (228)
T ss_dssp HH-HTCSEEEEEGGGCT-TTHHHHHHHHHHTTCEEEEEECTTSCGGG--GHHHHHSSSCCSEEEEES
T ss_pred HH-cCCCEEEECCCCcc-cHHHHHHHHHHHcCCCEEEEEeCCCCHHH--HHHHHhcCCCCCEEEEEe
Confidence 22 45788888665322 233455666655555666666 343333 2334444 999999844
No 221
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=38.41 E-value=35 Score=25.97 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (366)
...++...... +......+++.|++|.+.+|-+++++.+.-
T Consensus 81 ~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 121 (133)
T 2r25_B 81 TSPIVALTAFA-DDSNIKECLESGMNGFLSKPIKRPKLKTIL 121 (133)
T ss_dssp CSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 34555554433 334566788999999999999998776543
No 222
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=37.59 E-value=22 Score=32.76 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=34.7
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
+|..+. +.+|++++..+-+|++ .+++.++++.+ ++.|+|||+ ||+|+.++++
T Consensus 252 ~~~~~~-~~~v~~~~~~Gl~V~~WTVn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 304 (313)
T 3l12_A 252 YFLDVT-PELVAEAHDLGLIVLTWTVNEPEDIRRM---ATTGVDGIV--TDYPGRTQRI 304 (313)
T ss_dssp BGGGCC-HHHHHHHHHTTCEEEEBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred chhcCC-HHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHcCCCEEE--eCCHHHHHHH
Confidence 344443 4567766666666655 36777776655 578999998 7889876553
No 223
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=37.52 E-value=1.7e+02 Score=25.87 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=23.2
Q ss_pred CCHHHHHHH-HHHhhcccCeEEEec-CCHHHHHHHHH
Q 017770 167 KTPSEAQIF-LEALEQGLGGIVLKV-EDVKAVLALKE 201 (366)
Q Consensus 167 ~~~~eA~~a-l~~LE~G~DGVvl~~-~d~~ev~~l~~ 201 (366)
.+.++...+ ..+.+.|+|-|.+.+ -|++.++++++
T Consensus 163 ~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~ 199 (273)
T 2qjg_A 163 RDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVK 199 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 345554444 678899999988885 46666655554
No 224
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=37.19 E-value=51 Score=26.92 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=45.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-+.. .--.++..+. .....++......+ ......+++.|++|.+.+|-++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvl~D~~lp~~-~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~a~~~Ga~~~l~Kp~~~ 109 (208)
T 1yio_A 33 TFDCASTFLEHRRP-EQHGCLVLDMRMPGM-SGIELQEQLTAISDGIPIVFITAHGD-IPMTVRAMKAGAIEFLPKPFEE 109 (208)
T ss_dssp EESSHHHHHHHCCT-TSCEEEEEESCCSSS-CHHHHHHHHHHTTCCCCEEEEESCTT-SCCCHHHHHTTEEEEEESSCCH
T ss_pred EcCCHHHHHHhhhc-cCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCCEEEEeCCCC-HHHHHHHHHCCCcEEEeCCCCH
Confidence 34565553333222 345677775432221 1112333332 23455666554433 3355678899999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 110 ~~L~~~ 115 (208)
T 1yio_A 110 QALLDA 115 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877543
No 225
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=37.14 E-value=45 Score=25.22 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=42.6
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++.-..... ...+.++++..-... .--.++..+.. ....++...... +......+++.|+++++.+|-
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~ 107 (140)
T 3n53_A 31 ESKNEKEALEQIDH-HHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSE-HKEAIVNGLHSGADDYLTKPF 107 (140)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTC-------CHHHHHHTSTTCTTCCEEEEECC-----CTTTTTTCCCSEEEESSC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCC-cHHHHHHHHHcCcccCCCCEEEEecCC-CHHHHHHHHhcCCCeeeeCCC
Confidence 34454443332222 346777775432111 11122333222 345666655543 345567789999999999999
Q ss_pred CHHHHHHH
Q 017770 192 DVKAVLAL 199 (366)
Q Consensus 192 d~~ev~~l 199 (366)
+++++.+.
T Consensus 108 ~~~~l~~~ 115 (140)
T 3n53_A 108 NRNDLLSR 115 (140)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887654
No 226
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=36.96 E-value=74 Score=25.47 Aligned_cols=104 Identities=10% Similarity=-0.057 Sum_probs=57.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
+.++....+.|.+-++++++..+..+.+.... ..|.. ..+...++++.++.+. ...++.+|+-
T Consensus 16 ~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~--------------~~~~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 78 (153)
T 1id1_A 16 INTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------------GDNAD-VIPGDSNDSSVLKKAG--IDRCRAILAL 78 (153)
T ss_dssp HHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------------CTTCE-EEESCTTSHHHHHHHT--TTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECCChHHHHHHHHhh--------------cCCCe-EEEcCCCCHHHHHHcC--hhhCCEEEEe
Confidence 55666667789887777764333232222110 00111 1122234555544432 3567888886
Q ss_pred CCCCeeeehhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 017770 140 LPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (366)
Q Consensus 140 ~~DW~iIPlENliA~----~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (366)
..|- -.|+.+. -.....++++.+++.+.++.+ -+.|+|-|+
T Consensus 79 ~~~d----~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi 123 (153)
T 1id1_A 79 SDND----ADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI---KMVHPDIIL 123 (153)
T ss_dssp SSCH----HHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH---HTTCCSEEE
T ss_pred cCCh----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH---HHcCCCEEE
Confidence 5543 3444322 112346899999999988765 457999766
No 227
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.90 E-value=40 Score=29.28 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=53.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~---~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
-+.+..|++.|++.+-+...+ .+..+.+..+ .. .-| +..+ |. ++. .++.. ..++.+
T Consensus 16 ~~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~i~~l---~~----------~~~--~~li--vn--d~~-~~A~~-~gadgv 74 (210)
T 3ceu_A 16 DKIITALFEEGLDILHLRKPETPAMYSERLLTLI---PE----------KYH--RRIV--TH--EHF-YLKEE-FNLMGI 74 (210)
T ss_dssp HHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHS---CG----------GGG--GGEE--ES--SCT-THHHH-TTCSEE
T ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHH---HH----------HhC--CeEE--Ee--CCH-HHHHH-cCCCEE
Confidence 378899999999999988543 1222222222 11 001 1122 22 221 22222 245666
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
-+...|.. ..+ + .+.-+...+.|.+|++.+ . .|+|-|.+.|
T Consensus 75 hl~~~~~~---~~~--~----~~~~ig~s~~t~~e~~~A---~-~GaDyv~~g~ 115 (210)
T 3ceu_A 75 HLNARNPS---EPH--D----YAGHVSCSCHSVEEVKNR---K-HFYDYVFMSP 115 (210)
T ss_dssp ECCSSSCS---CCT--T----CCSEEEEEECSHHHHHTT---G-GGSSEEEECC
T ss_pred EECccccc---ccc--c----cCCEEEEecCCHHHHHHH---h-hCCCEEEECC
Confidence 66444542 211 1 244677888999998766 3 6999998643
No 228
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=36.44 E-value=47 Score=29.87 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=65.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcchh-hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~-~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.+.|+|.+.|..+.-+ ..+.+.. +++.|.+++..+.-.++. +.+.......|+|++
T Consensus 77 ~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~--------------i~~~G~k~gval~p~t~~--e~l~~~l~~~D~Vl~ 140 (228)
T 3ovp_A 77 EQWVKPMAVAGANQYTFHLEATENPGALIKD--------------IRENGMKVGLAIKPGTSV--EYLAPWANQIDMALV 140 (228)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHH--------------HHHTTCEEEEEECTTSCG--GGTGGGGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccCCchhHHHHHHH--------------HHHcCCCEEEEEcCCCCH--HHHHHHhccCCeEEE
Confidence 45788899999999998765211 1111111 123355555554333332 333333345788876
Q ss_pred eCC-----CCeeee--hhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HHHHHHHhh
Q 017770 139 DLP-----DWQVIP--AENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AVLALKEYF 203 (366)
Q Consensus 139 ~~~-----DW~iIP--lENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~-ev~~l~~~~ 203 (366)
-.- +-+.|| ++. |.++... ....+.+..-.. .+.+-.+.+.|+|++|.- .+|+. .++++++.+
T Consensus 141 msv~pGf~Gq~f~~~~l~k-i~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~ 217 (228)
T 3ovp_A 141 MTVEPGFGGQKFMEDMMPK-VHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 217 (228)
T ss_dssp ESSCTTTCSCCCCGGGHHH-HHHHHHHCTTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHH
T ss_pred eeecCCCCCcccCHHHHHH-HHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 432 334566 222 2222111 112233333332 355567789999999974 45764 466666554
No 229
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=36.32 E-value=77 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=29.2
Q ss_pred CCCeEEEEc-CCCCeeEEeeeeEEE-e-ccceEEEEEEeeccCCCceee
Q 017770 299 SGKEVIVVD-QKGRQRTAVVGRVKI-E-SRPLILVEAKALALAGHSEPS 344 (366)
Q Consensus 299 sG~eVLvVd-~~G~tR~a~VGRvKI-E-~RPLlLIeAe~~~~~~g~~~s 344 (366)
.|.+|+.+| .+|+.+...|=++-- . .++|+.|+.+ +|+.+.
T Consensus 45 ~~~~V~s~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~-----~G~~I~ 88 (185)
T 2lcj_A 45 REIKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELE-----DGRSFE 88 (185)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEEEEEECCSCEEEEEET-----TSCEEE
T ss_pred CCcEEEEEECCCCcEEEEEeeeEEEcCCCceEEEEEEC-----CCCEEE
Confidence 467999999 899988887765543 2 4678888764 466643
No 230
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=36.27 E-value=42 Score=25.33 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=28.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~~l 199 (366)
...++...... +......+++.|+++++.+|- +++++.+.
T Consensus 86 ~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~ 126 (137)
T 2pln_A 86 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVAR 126 (137)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHTTCSEEEESSCSCHHHHHHH
T ss_pred CccEEEEeCCC-CHHHHHHHHHcCCceeeeCCCCCHHHHHHH
Confidence 44565555443 345667889999999999999 99877653
No 231
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=36.12 E-value=43 Score=28.36 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
..+.++++..-... .--.++..+... ...++......+ ......+++.|++|++.+|-+++++.+.-.
T Consensus 49 ~~dlvilD~~l~~~-~g~~~~~~lr~~~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 117 (238)
T 2gwr_A 49 RPDLVLLDLMLPGM-NGIDVCRVLRADSGVPIVMLTAKTD-TVDVVLGLESGADDYIMKPFKPKELVARVR 117 (238)
T ss_dssp CCSEEEEESSCSSS-CHHHHHHHHHTTCCCCEEEEEETTC-CSCHHHHHHTTCCEEEEESCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHhCCCCcEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 46777775442221 112233333322 345555443332 234567789999999999999988765433
No 232
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=36.12 E-value=17 Score=37.52 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=40.9
Q ss_pred eeeecCCceeE----EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecc
Q 017770 273 FRVNAGPVHAY----VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR 325 (366)
Q Consensus 273 FRVNAGaVHaY----v~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~R 325 (366)
..|+.||+.+- -++|.|=+..=.+.+.||.|.|+|.+|+ .+-+|++..-..
T Consensus 510 v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~--~ia~G~a~~ss~ 564 (582)
T 1iq8_A 510 VVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDE--LLATGQALLSGR 564 (582)
T ss_dssp EEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCC--EEEEEEESSCHH
T ss_pred EEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCC--EEEEEEEeeCHH
Confidence 78999988663 5567777888788999999999999885 488898876443
No 233
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=36.09 E-value=23 Score=32.44 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=41.2
Q ss_pred CCCCCceEEEeccCceEEEEeeccccCC----CCCCC----------CeeeecCCceeEEEecCCceeeee---------
Q 017770 239 LMRPGEGLLVGSFARGLFLVHSECLESN----YIASR----------PFRVNAGPVHAYVLVPGGKTCYLS--------- 295 (366)
Q Consensus 239 ll~~GEGmLVGS~S~glFLVhsEt~es~----Yva~R----------PFRVNAGaVHaYv~~PggkT~YLS--------- 295 (366)
+|+.|.=+.|-.... .+.|..|.. .| |.+.+ .|. +|-.-++||.-|+|+.....
T Consensus 114 ~L~~gd~L~iP~r~~-tV~V~G~V~-~p~~v~~~~g~~~~dYi~~agg~~-~Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~ 190 (236)
T 3p42_A 114 PLVGDYTLYTVQRPV-TITLLGAVS-GAGQLPWLAGRSVTDYLQDHPRLA-GADKNNVMVITPEGETVVAPVALWNKRHV 190 (236)
T ss_dssp BCCEEEEEECCCCCS-EEEEEESBT-TCEEEECCTTCCHHHHHTTSCBCT-TBCSSEEEEECTTSCEEEEECSSTTCCCE
T ss_pred ccCCCCEEEECCCCC-EEEEEeecC-CcCeEeecCCCCHHHHHHhCCCCC-CCCCccEEEEeCCCCEEeccccccccCCC
Confidence 355555444554443 455666642 22 44433 355 67778899999999876654
Q ss_pred eccCCCeEEE
Q 017770 296 ELKSGKEVIV 305 (366)
Q Consensus 296 EL~sG~eVLv 305 (366)
++.+||+|.|
T Consensus 191 ~l~PG~~I~V 200 (236)
T 3p42_A 191 EPPPGSQLWL 200 (236)
T ss_dssp ECCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999876
No 234
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=35.71 E-value=12 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 166 v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+-+.++++.++ +.|+|||++...|++-++..++
T Consensus 76 vl~~d~~~~A~---~aGAd~v~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 76 VLTAEQVVLAK---SSGADFVVTPGLNPKIVKLCQD 108 (224)
T ss_dssp CCSHHHHHHHH---HHTCSEEECSSCCHHHHHHHHH
T ss_pred EeeHHHHHHHH---HCCCCEEEECCCCHHHHHHHHH
Confidence 34667777765 5699999988877765554444
No 235
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=35.19 E-value=40 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=27.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (120)
T 2a9o_A 72 SVPILMLSAKDS-EFDKVIGLELGADDYVTKPFSNRELQAR 111 (120)
T ss_dssp CCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCc-hHHHHHHHhCCHhheEeCCCCHHHHHHH
Confidence 345555544433 3345678899999999999999877553
No 236
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=35.14 E-value=64 Score=29.63 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=54.7
Q ss_pred EEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeeh------hhhhhcccCCCceEEEEcCCHHHH---HHHHHHhhcc
Q 017770 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPA------ENIVASFQGSGKTVFAISKTPSEA---QIFLEALEQG 182 (366)
Q Consensus 112 ~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPl------ENliA~~q~~~~~l~a~v~~~~eA---~~al~~LE~G 182 (366)
-.|+.-.+++-++.+.. ..|+++++..|= +.|- +||.+. ...+..++..+++.+.. ...-.+++.|
T Consensus 10 ~L~vP~~~~~~~~ka~~---gaD~vilDlEDa-v~~~~k~~Ar~~l~~~-~~~~~~~~VRVn~~~~~~~~~dl~~~~~~g 84 (273)
T 1u5h_A 10 WLFCPADAPEAFAAAAA---AADVVILDLEDG-VAEAQKPAARNALRDT-PLDPERTVVRINAGGTADQARDLEALAGTA 84 (273)
T ss_dssp EEEEETTCGGGHHHHHH---HCSEEEEESSTT-SCGGGHHHHHHHHHHS-CCCTTSEEEECCCTTCHHHHHHHHHHHTSC
T ss_pred EEEeeCCCHHHHHHHHh---CCCEEEEECCCC-CCcCCHHHHHHHHHhc-CcCCCeEEEEECCCCchHHHHHHHHHHhcC
Confidence 34555566666666544 689999988863 3333 455543 43455799999987632 3445567889
Q ss_pred cCeEEEe-cCCHHHHHHH
Q 017770 183 LGGIVLK-VEDVKAVLAL 199 (366)
Q Consensus 183 ~DGVvl~-~~d~~ev~~l 199 (366)
+|||+|. .+++++++.+
T Consensus 85 ~~gi~lPKv~s~~~v~~~ 102 (273)
T 1u5h_A 85 YTTVMLPKAESAAQVIEL 102 (273)
T ss_dssp CCEEEETTCCCHHHHHTT
T ss_pred CCEEEeCCCCCHHHHHHH
Confidence 9999996 4567777643
No 237
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=34.94 E-value=32 Score=29.59 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=50.6
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee-----ecCCcee
Q 017770 214 SLMKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV-----NAGPVHA 282 (366)
Q Consensus 214 ~L~~atVt~V~~vGmGD-RVCVDtcS-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRV-----NAGaVHa 282 (366)
...+++|++++.+.-+- ++.+..-. -+.||+=+.+- +..+ .....|||.+ +.|-+.=
T Consensus 10 ~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~--------~~~~----g~~~~R~ysi~s~~~~~~~~~l 77 (243)
T 2eix_A 10 EYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVK--------ATVD----GKEIYRPYTPVSSDDEKGYFDL 77 (243)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEE--------EEET----TEEEEEEECCCSCTTCCSEEEE
T ss_pred ceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEE--------EeeC----CCEEEeeeeecCCCCCCCEEEE
Confidence 45688999999886553 34444321 23555533221 1111 0112344443 2344555
Q ss_pred EEEe-c-CCceeeeeeccCCCeEEEEcCCCCe
Q 017770 283 YVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQ 312 (366)
Q Consensus 283 Yv~~-P-ggkT~YLSEL~sG~eVLvVd~~G~t 312 (366)
++.. | |.-|+||+.|+.||+|.+....|+.
T Consensus 78 ~vk~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f 109 (243)
T 2eix_A 78 IIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQF 109 (243)
T ss_dssp EEECCTTCHHHHHHHTCCTTCEEEEEEEECSC
T ss_pred EEEEcCCCCcchHhhcCCCCCEEEEECCeEEE
Confidence 5655 3 4479999999999999998877763
No 238
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=34.80 E-value=79 Score=29.91 Aligned_cols=132 Identities=11% Similarity=0.161 Sum_probs=64.3
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEEcCcch----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh---
Q 017770 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP--- 120 (366)
Q Consensus 50 ~K~vWiw~--~~K~~vT~ALEsG~~~~vv~~~~~----~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~--- 120 (366)
...-|++. .+.+.+..|..+|+|.++++-||. ++......+.. . +... +..+. ..++.|.+.
T Consensus 44 ~~Rs~L~vP~~~p~~~eka~~~gaD~vilDLEDaV~~~~k~~Ar~~l~~--~--l~~~---~~~~~--~~~VRVn~~~t~ 114 (316)
T 3qll_A 44 QTRSWLFTPATRSDRFAKAAENGADVAIIDLEDSVSQADKEQARQKAIS--Y--LSSR---PATSL--PLALRINGLDTR 114 (316)
T ss_dssp GCCEEEEEESCC----------CCSEEEEECSTTSCGGGHHHHHHHHHC----------------C--CEEEECCCTTSH
T ss_pred cccEEEECCCCCHHHHHHHhhCCCCEEEEeCCCCCCCcCHHHHHHHHHH--H--Hhcc---cccCC--eEEEEECCCCCc
Confidence 34568877 468889999999999999997763 22211111100 0 0000 00122 245555543
Q ss_pred ---hhhhhhccccCCCCeEEEeCCCCeeeehhhh---hhcccC--CCceEEEEcCCHHHHHHHHHHhh--cccCeEEEec
Q 017770 121 ---QELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQG--SGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKV 190 (366)
Q Consensus 121 ---ed~e~~~~~~~~~~~vvv~~~DW~iIPlENl---iA~~q~--~~~~l~a~v~~~~eA~~al~~LE--~G~DGVvl~~ 190 (366)
+|+..+.......+.+++ +++=-.|++ .+.+.. .+..+++.+.+++=..-+-+++. -|+||+.+-+
T Consensus 115 ~~~~Dl~~~l~~g~~~~gIvl----PKvesa~~v~~~~~~l~~~~~~~~l~~~IET~~gv~~~~eIa~a~~~v~~l~~G~ 190 (316)
T 3qll_A 115 AGIEDIHALLECGSLPDYLVL----PKTESAAHLQILDRLMMFAGSDTRLIGIIESVRGLNAVESIAAATPKLAGLIFGA 190 (316)
T ss_dssp HHHHHHHHHHHSCCCCSEEEE----TTCCSHHHHHHHHHHTSCC--CCEEEEEECSHHHHHTHHHHHTSCTTEEEEEECH
T ss_pred hhHHHHHHHHhCCCCCCEEEe----CCCCCHHHHHHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHHHhcCCCceEEEECH
Confidence 344443332111255555 222223332 232221 24679999999998888888887 3999999988
Q ss_pred CCHH
Q 017770 191 EDVK 194 (366)
Q Consensus 191 ~d~~ 194 (366)
.|..
T Consensus 191 ~DL~ 194 (316)
T 3qll_A 191 ADMA 194 (316)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 239
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=34.56 E-value=38 Score=24.97 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=39.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+. .....++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 47 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1srr_A 47 RPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVIIMTAYG-ELDMIQESKELGALTHFAKPFDIDEIRDA 114 (124)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCCCEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEEEEEccC-chHHHHHHHhcChHhhccCCCCHHHHHHH
Confidence 4577777543211 11122333332 2345666555433 34456778899999999999999887653
No 240
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=34.47 E-value=45 Score=24.93 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=38.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
..+.++++..-+. ..--.++..+.. .+..++...... +......+++.|+++.+.+|-+++++.+
T Consensus 46 ~~dlvllD~~~p~-~~g~~~~~~l~~~~~~~~~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~ 114 (122)
T 3gl9_A 46 TPDLIVLXIMMPV-MDGFTVLKKLQEKEEWKRIPVIVLTAKG-GEEDESLALSLGARKVMRKPFSPSQFIE 114 (122)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHTSTTTTTSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeccCCC-CcHHHHHHHHHhcccccCCCEEEEecCC-chHHHHHHHhcChhhhccCCCCHHHHHH
Confidence 4566777433211 111234444422 234566555433 3345567899999999999999987754
No 241
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=33.98 E-value=51 Score=29.80 Aligned_cols=128 Identities=13% Similarity=0.197 Sum_probs=66.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
.+.+..+.+.|+|.+.|..+. -.... ++ + +.+++.|++++..+.-.++. +.+.......|+|++
T Consensus 70 ~~~i~~~~~aGAd~itvh~Ea~~~~~~---~~--i--------~~i~~~G~k~gv~lnp~tp~--~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 70 QDYIAQLARAGADFITLHPETINGQAF---RL--I--------DEIRRHDMKVGLILNPETPV--EAMKYYIHKADKITV 134 (231)
T ss_dssp GGTHHHHHHHTCSEEEECGGGCTTTHH---HH--H--------HHHHHTTCEEEEEECTTCCG--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECcccCCccHH---HH--H--------HHHHHcCCeEEEEEECCCcH--HHHHHHHhcCCEEEE
Confidence 335799999999999987653 11111 11 0 12234567766665544443 333333346788875
Q ss_pred eC-----CCCeeee--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-c-----CC-H-HHHHH
Q 017770 139 DL-----PDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-V-----ED-V-KAVLA 198 (366)
Q Consensus 139 ~~-----~DW~iIP--lENl---iA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-~-----~d-~-~ev~~ 198 (366)
-. .+-+.|| ++.| -+..+ +.+. .+.+-.-.. .+.+-.+.+.|+|+++.- + +| + +.+++
T Consensus 135 msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~-~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~ 212 (231)
T 3ctl_A 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEY-EIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRI 212 (231)
T ss_dssp ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCC-EEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHH
T ss_pred eeeccCcCCccccHHHHHHHHHHHHHHhccCCCc-eEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHH
Confidence 32 2334454 3322 11111 1122 233333222 233445578899999998 3 36 5 45666
Q ss_pred HHHhhc
Q 017770 199 LKEYFD 204 (366)
Q Consensus 199 l~~~~~ 204 (366)
|++.++
T Consensus 213 l~~~~~ 218 (231)
T 3ctl_A 213 MTAQIL 218 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 242
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=33.28 E-value=70 Score=29.18 Aligned_cols=112 Identities=17% Similarity=0.066 Sum_probs=65.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 017770 59 SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~~------~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (366)
--++...+.+.|++++=+-.++ .+..+.+.+-.- -|+...| -|.++.+++++. ...
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~-lPvl~kd---------------fI~d~~qi~~a~--~~G 128 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVD-LPLLRKD---------------FVVDPFMLEEAR--AFG 128 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCC-SCEEEES---------------CCCSHHHHHHHH--HTT
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcC-CCEEECC---------------cCCCHHHHHHHH--HcC
Confidence 3678888999999987764321 222222222100 1222111 135666655533 246
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
+|.|++...+-+ =-++.++.....-+-..+.++++.+|++ .+++.|+|=|-+.+.+
T Consensus 129 AD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~---~a~~~gad~IGvn~~~ 184 (254)
T 1vc4_A 129 ASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELE---IALEAGAEVLGINNRD 184 (254)
T ss_dssp CSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHH---HHHHHTCSEEEEESBC
T ss_pred CCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHcCCCEEEEcccc
Confidence 788888666444 3456666532233457789999999987 5667789988776543
No 243
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.25 E-value=1.5e+02 Score=22.19 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+... ...++......+ ....+++.|+++++.+|-+++++.+.
T Consensus 55 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~---~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (143)
T 2qv0_A 55 KVDAIFLDINIPS-LDGVLLAQNISQFAHKPFIVFITAWKE---HAVEAFELEAFDYILKPYQESRIINM 120 (143)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHTTSTTCCEEEEEESCCT---THHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHccCCCceEEEEeCCHH---HHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 4677777433221 2222344444332 334666655533 35677899999999999999887654
No 244
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=33.23 E-value=56 Score=30.85 Aligned_cols=52 Identities=15% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+.+.+.+.+.+ |...++.++...+..++..+.+.++|+. +.+.|+|+|++.
T Consensus 121 ~g~~~V~~~~g~----~~~~~i~~~~~~g~~v~~~v~t~~~a~~---a~~~GaD~i~v~ 172 (369)
T 3bw2_A 121 DPVPVVSFHFGV----PDREVIARLRRAGTLTLVTATTPEEARA---VEAAGADAVIAQ 172 (369)
T ss_dssp SCCSEEEEESSC----CCHHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEE
T ss_pred cCCCEEEEeCCC----CcHHHHHHHHHCCCeEEEECCCHHHHHH---HHHcCCCEEEEe
Confidence 357888887654 3345666665556789999999998874 457899999994
No 245
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=33.17 E-value=62 Score=27.54 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=60.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
..+.....+.|.+-++++.+ .+.++++.+-. |.. ..+...++++.++.+. ...++.+|+-
T Consensus 13 ~~la~~L~~~g~~v~vid~~-~~~~~~l~~~~----------------~~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 72 (218)
T 3l4b_C 13 YYLARSMLSRKYGVVIINKD-RELCEEFAKKL----------------KAT-IIHGDGSHKEILRDAE--VSKNDVVVIL 72 (218)
T ss_dssp HHHHHHHHHTTCCEEEEESC-HHHHHHHHHHS----------------SSE-EEESCTTSHHHHHHHT--CCTTCEEEEC
T ss_pred HHHHHHHHhCCCeEEEEECC-HHHHHHHHHHc----------------CCe-EEEcCCCCHHHHHhcC--cccCCEEEEe
Confidence 44556666789887777654 44554433210 000 1121234555555442 3467888886
Q ss_pred CCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 140 ~~DW~iIPlENliA~~----q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
..|- .+|+++.. .....++++.+++.+.++.+ .+.|+|-|+....
T Consensus 73 ~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l---~~~G~d~vi~p~~ 121 (218)
T 3l4b_C 73 TPRD----EVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF---KKMGITTVLNLTT 121 (218)
T ss_dssp CSCH----HHHHHHHHHHHHTSCCCEEEECCCSGGGHHHH---HHHTCEECCCHHH
T ss_pred cCCc----HHHHHHHHHHHHHcCCCeEEEEEeCcchHHHH---HHCCCCEEECHHH
Confidence 6553 34543331 13456899999999999876 4569998775443
No 246
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=33.16 E-value=91 Score=25.84 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=46.8
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (366)
...+.++.-..... ...+.++++..-...=-+ .++..+.. ....++...... +......+++.|++|++.+|-+++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~-~~~~~l~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (230)
T 2oqr_A 33 VVTDGPAALAEFDR-AGADIVLLDLMLPGMSGT-DVCKQLRARSSVPVIMVTARD-SEIDKVVGLELGADDYVTKPYSAR 109 (230)
T ss_dssp EECSHHHHHHHHHH-HCCSEEEEESSCSSSCHH-HHHHHHHHHCSCSEEEEECCH-HHHHHHHHHHHCCSCCCCSSCCHH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEeCCC-cHHHHHHHHHcCCCEEEeCCCCHH
Confidence 34555543332222 346778885542221111 23333221 345677666554 455677889999999999999998
Q ss_pred HHHHH
Q 017770 195 AVLAL 199 (366)
Q Consensus 195 ev~~l 199 (366)
++.+.
T Consensus 110 ~l~~~ 114 (230)
T 2oqr_A 110 ELIAR 114 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 247
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=33.06 E-value=49 Score=33.24 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEE-EEcCCHHHHHHHHHHhhcccCeEEEe----------------cC
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVF-AISKTPSEAQIFLEALEQGLGGIVLK----------------VE 191 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~-a~v~~~~eA~~al~~LE~G~DGVvl~----------------~~ 191 (366)
...+.++++..+..-..+.++|.++... +..++ ..+.+.++|+.+. +.|+|+|++. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~---~aGad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALI---EAGANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH---HHTCSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHH---HhCCCEEEECCCCccccccccccCCCCC
Confidence 4689999987765545555666665432 23454 4888888887755 5799999972 22
Q ss_pred CHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCC-CCceEEEeccCceEEEEeeccccC-CCCC
Q 017770 192 DVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMR-PGEGLLVGSFARGLFLVHSECLES-NYIA 269 (366)
Q Consensus 192 d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcSll~-~GEGmLVGS~S~glFLVhsEt~es-~Yva 269 (366)
+...+.++.+.+... .+++ |-.=|+.+-- |-.-.|. --.|..+|+ +|+-..|+-.. -|..
T Consensus 344 ~~~~l~~v~~~~~~~-----~iPV-------Ia~GGI~~~~--di~kala~GA~~V~vGs----~~~~~~es~g~~~~~~ 405 (511)
T 3usb_A 344 QLTAVYDCATEARKH-----GIPV-------IADGGIKYSG--DMVKALAAGAHVVMLGS----MFAGVAESPGETEIYQ 405 (511)
T ss_dssp HHHHHHHHHHHHHTT-----TCCE-------EEESCCCSHH--HHHHHHHTTCSEEEEST----TTTTBTTSSSCEEECS
T ss_pred cHHHHHHHHHHHHhC-----CCcE-------EEeCCCCCHH--HHHHHHHhCchhheecH----HHhcCccCchhhhhcc
Confidence 233444444333211 1111 1111322210 1111111 246788887 34434443211 1456
Q ss_pred CCCeeeecCCceeEEEecCCceeeeee
Q 017770 270 SRPFRVNAGPVHAYVLVPGGKTCYLSE 296 (366)
Q Consensus 270 ~RPFRVNAGaVHaYv~~PggkT~YLSE 296 (366)
-|.|...=|---.-.+-.|.+.||.++
T Consensus 406 g~~~k~~~gm~s~~a~~~~~~~r~~~~ 432 (511)
T 3usb_A 406 GRQFKVYRGMGSVGAMEKGSKDRYFQE 432 (511)
T ss_dssp SSEEEC---------------------
T ss_pred CeeeeeeeccccHHHHhcccccchhcc
Confidence 777776655443333345788899876
No 248
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=32.79 E-value=78 Score=31.54 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=40.2
Q ss_pred hhhhhhcccc-CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEE
Q 017770 121 QELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 121 ed~e~~~~~~-~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl 188 (366)
++++.+.... ..++.++++...-.--.+.++|.++... +..|++. +.+.++|+. +.+.|+|+|.+
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~---l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKA---LAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHH---HHHTTCSEEEE
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHH---HHHcCCCEEEE
Confidence 4444433322 3588999987754433444555554332 2355554 888888766 45789999998
No 249
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=32.73 E-value=49 Score=25.22 Aligned_cols=67 Identities=7% Similarity=0.113 Sum_probs=38.9
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
...+.++++..-+. ..--.++..+.. ....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 47 ~~~dlvl~D~~lp~-~~g~~~~~~lr~~~~~~~~pii~~t~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 117 (136)
T 3t6k_A 47 NLPDALICDVLLPG-IDGYTLCKRVRQHPLTKTLPILMLTAQ-GDISAKIAGFEAGANDYLAKPFEPQELVYR 117 (136)
T ss_dssp SCCSEEEEESCCSS-SCHHHHHHHHHHSGGGTTCCEEEEECT-TCHHHHHHHHHHTCSEEEETTCCHHHHHHH
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCcCCccEEEEecC-CCHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 34577777443221 111223333322 23345555444 334456788999999999999999877643
No 250
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=32.29 E-value=1.3e+02 Score=28.28 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=11.6
Q ss_pred HHHHHHHhCCcEEE
Q 017770 62 VMTAAVERGWNTFV 75 (366)
Q Consensus 62 ~vT~ALEsG~~~~v 75 (366)
.+..|++.|+|++=
T Consensus 113 ~ve~a~~~GAdaV~ 126 (304)
T 1to3_A 113 NAQAVKRDGAKALK 126 (304)
T ss_dssp CHHHHHHTTCCEEE
T ss_pred hHHHHHHcCCCEEE
Confidence 37889999999864
No 251
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=32.22 E-value=2.1e+02 Score=27.20 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=50.2
Q ss_pred CCCCeEEEeCCCC----------eeeehhhhhhcc-------cCCCceEEEEcCCH-----HHH-HHHHHHhhcccCeEE
Q 017770 131 GQAENIVIDLPDW----------QVIPAENIVASF-------QGSGKTVFAISKTP-----SEA-QIFLEALEQGLGGIV 187 (366)
Q Consensus 131 ~~~~~vvv~~~DW----------~iIPlENliA~~-------q~~~~~l~a~v~~~-----~eA-~~al~~LE~G~DGVv 187 (366)
..+.-|-|+...| +++|.|..++++ .+.+.-|+|..... +|| +-+.--.|.|+|+|.
T Consensus 110 aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if 189 (298)
T 3eoo_A 110 AGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIF 189 (298)
T ss_dssp TTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred hCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEE
Confidence 3466777888776 489999766554 23456788887765 222 334445678999999
Q ss_pred Ee-cCCHHHHHHHHHhh
Q 017770 188 LK-VEDVKAVLALKEYF 203 (366)
Q Consensus 188 l~-~~d~~ev~~l~~~~ 203 (366)
+. ..|+++++++.+.+
T Consensus 190 ~~~~~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 190 PEAMKTLDDYRRFKEAV 206 (298)
T ss_dssp ECCCCSHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 97 45789988887765
No 252
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=31.87 E-value=51 Score=32.14 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=58.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhcccc-CCCC
Q 017770 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPAD-GQAE 134 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~~~~-~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~-~~~~ 134 (366)
-+.++..++-+.|.-++|-.... .+.+++..+..+ .+++ .+.. +...+.+.... ...+
T Consensus 54 te~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i~~~~~-----------------~~~~--~~g~~~~~~e~~~~a~~aGvd 114 (361)
T 3r2g_A 54 TESNMANFMHSKGAMGALHRFMTIEENIQEFKKCKG-----------------PVFV--SVGCTENELQRAEALRDAGAD 114 (361)
T ss_dssp CSHHHHHHHHHTTCEEBCCSCSCHHHHHHHHHTCCS-----------------CCBE--EECSSHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhcce-----------------EEEE--EcCCCHHHHHHHHHHHHcCCC
Confidence 46788888888887666643211 233333333221 1122 2222 22323322221 3578
Q ss_pred eEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 135 NIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 135 ~vvv~~~-DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
.+.++.. ++. -.+.++|+.+... +..|++ .+.++++|+.+ .+.|+|+|.+.
T Consensus 115 vI~id~a~G~~-~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a---~~aGaD~I~Vg 169 (361)
T 3r2g_A 115 FFCVDVAHAHA-KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYL---ASCGADIIKAG 169 (361)
T ss_dssp EEEEECSCCSS-HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHH---HHTTCSEEEEC
T ss_pred EEEEeCCCCCc-HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHH---HHcCCCEEEEc
Confidence 8888643 221 1122344444332 457888 69999998765 47799999983
No 253
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=31.12 E-value=12 Score=32.49 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=23.8
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
.+|.+...|| ||++|..|..+.+..|-.
T Consensus 50 ~al~~~~~G~-VlVvd~~g~~~~a~~G~~ 77 (161)
T 1q5x_A 50 DLLEQNGRGR-VLVVDGGGSVRRALVDAE 77 (161)
T ss_dssp HHHTSCCTTE-EEEEECTTCSSSEEECHH
T ss_pred HHHhhcCCCC-EEEEECCCCCCceeehHH
Confidence 5788888887 999999999999988843
No 254
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=31.02 E-value=1.6e+02 Score=24.12 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=57.7
Q ss_pred hhHHHHHHHh-CCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 017770 60 KQVMTAAVER-GWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (366)
Q Consensus 60 K~~vT~ALEs-G~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (366)
..+.....+. |.+-++++.+ .+..+.+... |-. ..+....+++.++.+. ...+++.+|+
T Consensus 52 ~~~a~~L~~~~g~~V~vid~~-~~~~~~~~~~-----------------g~~-~~~gd~~~~~~l~~~~-~~~~ad~vi~ 111 (183)
T 3c85_A 52 TGAYDELRARYGKISLGIEIR-EEAAQQHRSE-----------------GRN-VISGDATDPDFWERIL-DTGHVKLVLL 111 (183)
T ss_dssp HHHHHHHHHHHCSCEEEEESC-HHHHHHHHHT-----------------TCC-EEECCTTCHHHHHTBC-SCCCCCEEEE
T ss_pred HHHHHHHHhccCCeEEEEECC-HHHHHHHHHC-----------------CCC-EEEcCCCCHHHHHhcc-CCCCCCEEEE
Confidence 5566666677 9987777654 4444433322 110 1111223444433320 1346788888
Q ss_pred eCCCCe-eeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 139 DLPDWQ-VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 139 ~~~DW~-iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
-..+.. .+.+-..+.. .+...++++.+++.+.++.+ .+.|+|-|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi~p~~ 161 (183)
T 3c85_A 112 AMPHHQGNQTALEQLQR-RNYKGQIAAIAEYPDQLEGL---LESGVDAAFNIYS 161 (183)
T ss_dssp CCSSHHHHHHHHHHHHH-TTCCSEEEEEESSHHHHHHH---HHHTCSEEEEHHH
T ss_pred eCCChHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH---HHcCCCEEEchHH
Confidence 555422 2222222222 23456899999998887744 3569998765444
No 255
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=30.87 E-value=60 Score=27.95 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=27.6
Q ss_pred cCCceeEEEecCCc--eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 017770 277 AGPVHAYVLVPGGK--TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (366)
Q Consensus 277 AGaVHaYv~~Pggk--T~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE 323 (366)
+=|=|-+...-+|+ ....+||+.||.|++.+. +..+...|-++...
T Consensus 99 ~T~~Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~-~~~~~~~V~~v~~~ 146 (186)
T 2jmz_A 99 LTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKN-NTINLDEVIKVETV 146 (186)
T ss_dssp BCTTCEEEEEETTEEEEEEGGGCCTTSEEEEECS-SSEEEEECCCCCEE
T ss_pred EeCCCEEEEeCCCeEEEEEhhcCCCCCEEEeccc-CCccceEEEEEEEe
Confidence 33444444443444 678899999999999864 33444444444433
No 256
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=30.49 E-value=57 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCCcEEEEEeC-----chhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWTE-----SKQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~~-----~K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+.+.||+||- +++.+...++.|+|+|+.+..
T Consensus 210 ~~G~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~TD~p 246 (258)
T 2o55_A 210 EKGLSVTVWMPWIFDDSEEDWKKCLELQVDLICSNYP 246 (258)
T ss_dssp HTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEEESCH
T ss_pred HCCCEEEEeeCCCCCCCHHHHHHHHHcCCCEEEeCCH
Confidence 45678999996 688999999999999998653
No 257
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=30.27 E-value=49 Score=24.18 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+.. ....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 45 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1mb3_A 45 KPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHIPVVAVTAF-AMKGDEERIREGGCEAYISKPISVVHFLET 114 (124)
T ss_dssp CCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTSCEEEEC-------CHHHHHHHTCSEEECSSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHcCccccCCcEEEEECC-CCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 4567777433211 112233444332 23456655443 334455677899999999999999887653
No 258
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=30.09 E-value=46 Score=29.02 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeC
Q 017770 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL 140 (366)
Q Consensus 61 ~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~ 140 (366)
+++..+.+.|+|.+.+...+......-..+..+.. +.+.-+.++..-.-|.++++.+.+...- ++.+++
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~-------i~~~~~iPvi~~Ggi~~~~~~~~~~~~G--ad~V~l-- 103 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISATHEERAILLDVVAR-------VAERVFIPLTVGGGVRSLEDARKLLLSG--ADKVSV-- 103 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHH-------HHTTCCSCEEEESSCCSHHHHHHHHHHT--CSEEEE--
T ss_pred HHHHHHHHcCCCEEEEEcCCccccCccccHHHHHH-------HHHhCCCCEEEECCcCCHHHHHHHHHcC--CCEEEE--
Q ss_pred CCCeeee----hhhhhhcccCCCceEEEEcCC-----------------HHHHHHHHHHhhcccCeEEEecCC-------
Q 017770 141 PDWQVIP----AENIVASFQGSGKTVFAISKT-----------------PSEAQIFLEALEQGLGGIVLKVED------- 192 (366)
Q Consensus 141 ~DW~iIP----lENliA~~q~~~~~l~a~v~~-----------------~~eA~~al~~LE~G~DGVvl~~~d------- 192 (366)
+-..++ ++.+...+......+-..+++ .+-.+.+..+.+.|++++++...+
T Consensus 104 -g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g 182 (252)
T 1ka9_F 104 -NSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEG 182 (252)
T ss_dssp -CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSC
T ss_pred -ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCC
Q ss_pred --HHHHHHHHHhh
Q 017770 193 --VKAVLALKEYF 203 (366)
Q Consensus 193 --~~ev~~l~~~~ 203 (366)
.+.++++++.+
T Consensus 183 ~~~~~i~~l~~~~ 195 (252)
T 1ka9_F 183 YDLRLTRMVAEAV 195 (252)
T ss_dssp CCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHc
No 259
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=30.07 E-value=1.7e+02 Score=23.82 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=27.9
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
.++..... .+......+++.|+++++.+|-+++++...
T Consensus 87 pii~lt~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 124 (205)
T 1s8n_A 87 PIVVLTAF-SQRDLVERARDAGAMAYLVKPFSISDLIPA 124 (205)
T ss_dssp CEEEEEEG-GGHHHHHTTGGGSCEEEEEESCCHHHHHHH
T ss_pred CEEEEecC-CCHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Confidence 45544433 345666789999999999999998877543
No 260
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.94 E-value=1.5e+02 Score=21.20 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
...+.++++..-.. ..--.++..+. .....++......+.. ..+++.|+++.+.+|-+++++.+
T Consensus 44 ~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~---~~~~~~g~~~~l~Kp~~~~~l~~ 109 (116)
T 3a10_A 44 GNYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIILLTAYSHYR---SDMSSWAADEYVVKSFNFDELKE 109 (116)
T ss_dssp SCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCGGGG---GCGGGGGSSEEEECCSSTHHHHH
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEEEECCcchH---HHHHhccccceEECCCCHHHHHH
Confidence 34677777433211 12223333332 2345677666655443 67889999999999999887654
No 261
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.85 E-value=65 Score=31.35 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=62.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 017770 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (366)
Q Consensus 60 K~~vT~ALEsG~~~~vv~~~~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (366)
..+.....+.|.+-++++.+ .+.++++.+.+. . .++...++++-++.+- ..+++.+|+.
T Consensus 17 ~~va~~L~~~g~~vvvId~d-~~~v~~~~~~g~-----------------~-vi~GDat~~~~L~~ag--i~~A~~viv~ 75 (413)
T 3l9w_A 17 QITGRLLLSSGVKMVVLDHD-PDHIETLRKFGM-----------------K-VFYGDATRMDLLESAG--AAKAEVLINA 75 (413)
T ss_dssp HHHHHHHHHTTCCEEEEECC-HHHHHHHHHTTC-----------------C-CEESCTTCHHHHHHTT--TTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHhCCC-----------------e-EEEcCCCCHHHHHhcC--CCccCEEEEC
Confidence 55566666789998887764 555554443311 1 1333345566555442 3568888886
Q ss_pred CCCCeeeehhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 140 LPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 140 ~~DW~iIPlENliA~----~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
..| +-.|+... -.+.+.+|++.+++.++++.+ .+.|+|-|+-
T Consensus 76 ~~~----~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L---~~~Gad~Vi~ 121 (413)
T 3l9w_A 76 IDD----PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPER 121 (413)
T ss_dssp CSS----HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHH---HHTTCSSCEE
T ss_pred CCC----hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEEC
Confidence 666 34454332 223456899999999998876 4689998874
No 262
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=29.53 E-value=17 Score=32.41 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=40.1
Q ss_pred EecChhhhhhhcccc--CCCCeEEEeCCCCeee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 116 EVSTPQELQQLQPAD--GQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~iI-PlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
...++++....+..+ +..+.+-+..++..-. -++.+-.++. .-..-...+-+.++++.++ +.|+|||++...|
T Consensus 23 r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~-~~~vgagtvi~~d~~~~A~---~aGAd~v~~p~~d 98 (214)
T 1wbh_A 23 VVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVP-EAIVGAGTVLNPQQLAEVT---EAGAQFAISPGLT 98 (214)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCT-TSEEEEESCCSHHHHHHHH---HHTCSCEEESSCC
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCc-CCEEeeCEEEEHHHHHHHH---HcCCCEEEcCCCC
Confidence 445555544433322 4466666665543211 1112222332 1111222345667777765 5699999988777
Q ss_pred HHHHHH
Q 017770 193 VKAVLA 198 (366)
Q Consensus 193 ~~ev~~ 198 (366)
++-++.
T Consensus 99 ~~v~~~ 104 (214)
T 1wbh_A 99 EPLLKA 104 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 754433
No 263
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=28.81 E-value=14 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=29.7
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 287 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 287 Pgg-kT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
++| -|+||.+|+.||+|.+-...|+.... -..+|+++|=+
T Consensus 124 ~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~------~~~~~~vliag 164 (290)
T 2r6h_A 124 KPGISSSYIFSLKPGDKVMMSGPYGDFHIQ------DTDAEMLYIGG 164 (290)
T ss_dssp CCCHHHHHHTTCCTTCEEEEEEEECCCCCC------SSSCEEEEEEE
T ss_pred CCcchhhHHhcCCCCCEEEEEecccCCcCC------CCCCeEEEEEC
Confidence 344 58999999999999998888876421 13578888744
No 264
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=28.72 E-value=1.5e+02 Score=28.20 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=23.9
Q ss_pred EEEEeCchhHHHHHHHhCCcE-----EEEcCcc
Q 017770 53 VWIWTESKQVMTAAVERGWNT-----FVFLSEN 80 (366)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~-----~vv~~~~ 80 (366)
-|.+..+.+.+..|..+|+|. ++++-||
T Consensus 24 ~~~~~~~~~~~eka~~~gaD~~pv~~vilDLED 56 (339)
T 3r4i_A 24 CDHYAGSEKLMLKSLALQQQLGPVFDITLDCED 56 (339)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCTTEEEEEESST
T ss_pred HHhhCCCHHHHHHHHhCCCCcCCCCcEEEECCC
Confidence 566668899999999999998 9988765
No 265
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=28.72 E-value=2.1e+02 Score=23.54 Aligned_cols=51 Identities=22% Similarity=0.144 Sum_probs=34.3
Q ss_pred eEEEEEEEEEcCCcceEEEeecCCCCCCceE-EEeccC----ceEEEEeeccccCCCCCC
Q 017770 216 MKATVTRVDVAGMGDRVCVDLCSLMRPGEGL-LVGSFA----RGLFLVHSECLESNYIAS 270 (366)
Q Consensus 216 ~~atVt~V~~vGmGDRVCVDtcSll~~GEGm-LVGS~S----~glFLVhsEt~es~Yva~ 270 (366)
..++...|-.+=-||+|+|-. ..|.+- +.++.. =.-||++.+...+||.+-
T Consensus 88 ~~~s~s~il~L~~GD~V~v~~----~~~~~~~~~~~~~~~s~FsGfLl~~D~~~~~~~~~ 143 (148)
T 4f3j_A 88 ASLSGGAMVRLEPEDQVWVQV----GVGDYIGIYASIKTDSTFSGFLVYSDWHSSPVFAH 143 (148)
T ss_dssp EEEEEEEEEEECTTCEEEEEC----CSTTCEEEECBTTBCCEEEEEEEEESCCSSTTTCC
T ss_pred ceEeeEEEEEcCCCCEEEEEE----EcCCCceEEcCCCCCeEEEEEEEeecCCCCceEEe
Confidence 344566677888999999974 233332 334321 246899999999998764
No 266
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.70 E-value=47 Score=25.02 Aligned_cols=81 Identities=9% Similarity=0.097 Sum_probs=45.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q----~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (366)
...+.++....... ...+.++++..-.. ..--.++..+. .....++...... +......+++.|+++++.+|-
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~kp~ 112 (142)
T 3cg4_A 36 SADSGGQCIDLLKK-GFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQGIAIVMLTAKN-APDAKMIGLQEYVVDYITKPF 112 (142)
T ss_dssp EESSHHHHHHHHHT-CCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTTEEEEEEECTT-CCCCSSTTGGGGEEEEEESSC
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCCEEEEECCC-CHHHHHHHHhcCccEEEeCCC
Confidence 34555543332222 34567777543222 22223344432 2345666665543 234556788999999999999
Q ss_pred CHHHHHHH
Q 017770 192 DVKAVLAL 199 (366)
Q Consensus 192 d~~ev~~l 199 (366)
+++++.+.
T Consensus 113 ~~~~l~~~ 120 (142)
T 3cg4_A 113 DNEDLIEK 120 (142)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99877553
No 267
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=28.53 E-value=3.1e+02 Score=25.80 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=49.0
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCeeee------hhhhhhcccC---CCceEEEEcCCHHH---HHHHHHHhh
Q 017770 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP------AENIVASFQG---SGKTVFAISKTPSE---AQIFLEALE 180 (366)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIP------lENliA~~q~---~~~~l~a~v~~~~e---A~~al~~LE 180 (366)
.|+.=.+++-++.+.. ...|++|++..|= +.| .+|+.+.++. ....++..+++.+- ..-...+|.
T Consensus 49 L~vP~~~p~~~eka~~--~gaD~vilDLEDa-V~~~~k~~Ar~~l~~~l~~~~~~~~~~~VRVn~~~t~~~~~Dl~~~l~ 125 (316)
T 3qll_A 49 LFTPATRSDRFAKAAE--NGADVAIIDLEDS-VSQADKEQARQKAISYLSSRPATSLPLALRINGLDTRAGIEDIHALLE 125 (316)
T ss_dssp EEEESCC------------CCSEEEEECSTT-SCGGGHHHHHHHHHC---------CCEEEECCCTTSHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHhh--CCCCEEEEeCCCC-CCCcCHHHHHHHHHHHHhcccccCCeEEEEECCCCCchhHHHHHHHHh
Confidence 3444444554444432 4688999987763 333 2345554433 23578999988752 223345677
Q ss_pred ccc--CeEEEe-cCCHHHHHHHHHhhcc
Q 017770 181 QGL--GGIVLK-VEDVKAVLALKEYFDG 205 (366)
Q Consensus 181 ~G~--DGVvl~-~~d~~ev~~l~~~~~~ 205 (366)
.|. |||+|. .++++++..+.+.+..
T Consensus 126 ~g~~~~gIvlPKvesa~~v~~~~~~l~~ 153 (316)
T 3qll_A 126 CGSLPDYLVLPKTESAAHLQILDRLMMF 153 (316)
T ss_dssp SCCCCSEEEETTCCSHHHHHHHHHHTSC
T ss_pred CCCCCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 775 999997 5678999888887743
No 268
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=28.41 E-value=25 Score=34.41 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----c--------CCceeeeeeccCCCeEEEEc-CCCCeeEEeeeeEEEec
Q 017770 265 SNYIASRPFRVNA------GPVHAYVLV-----P--------GGKTCYLSELKSGKEVIVVD-QKGRQRTAVVGRVKIES 324 (366)
Q Consensus 265 s~Yva~RPFRVNA------GaVHaYv~~-----P--------ggkT~YLSEL~sG~eVLvVd-~~G~tR~a~VGRvKIE~ 324 (366)
.|...+|||-+-- |-+|=.|.+ | |.-|.||++|+.||+|.+-- ..|.-+.- .-..
T Consensus 205 lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp-----~~~~ 279 (435)
T 1f20_A 205 LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLP-----RNPQ 279 (435)
T ss_dssp SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCC-----SCTT
T ss_pred CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCC-----CCCC
Confidence 3455667766532 445555543 3 44589999999999999876 44454311 0125
Q ss_pred cceEEE
Q 017770 325 RPLILV 330 (366)
Q Consensus 325 RPLlLI 330 (366)
+|++||
T Consensus 280 ~piilI 285 (435)
T 1f20_A 280 VPCILV 285 (435)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 788887
No 269
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=28.04 E-value=29 Score=30.89 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
.+.+-+ ++..++-+.++++++..+-++++- +++.++++.. .++.|+|||+ ||+|+.+.++.+
T Consensus 171 ~~~i~~---~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~~--l~~~GvdgIi--TD~p~~~~~~~~ 233 (248)
T 1zcc_A 171 ASIIEI---TPAQMRRPGIIEASRKAGLEIMVYYGGDDMAVHRE--IATSDVDYIN--LDRPDLFAAVRS 233 (248)
T ss_dssp CSEEEE---CHHHHHSHHHHHHHHHHTCEEEEECCCCCHHHHHH--HHHSSCSEEE--ESCHHHHHHHHH
T ss_pred CCEEEe---cHHHhCCHHHHHHHHHCCCEEEEECCCCHHHHHHH--HHHcCCCEEE--ECCHHHHHHHHH
Confidence 444444 566663356777776666566553 6777776651 4689999977 788987766544
No 270
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.02 E-value=86 Score=23.31 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..+.. ....++......+ ......+++.|+++.+.+|-+++++...
T Consensus 47 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (136)
T 1mvo_A 47 KPDLIVLDVMLPK-LDGIEVCKQLRQQKLMFPILMLTAKDE-EFDKVLGLELGADDYMTKPFSPREVNAR 114 (136)
T ss_dssp CCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEEEEECTTC-CCCHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 4577777543221 122234444322 2345555544433 2344567899999999999999877554
No 271
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=27.80 E-value=1e+02 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|.-|+||.+|+.||+|.+-...|+.-... .-..+|++||=+
T Consensus 126 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 166 (310)
T 3vo2_A 126 GVCSNFLCDLKPGADVKITGPVGKEMLMP----KDPNATVIMLAT 166 (310)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEE
T ss_pred cchhhHHhcCCCCCEEEEEeccCCcccCC----CCCCCCEEEEeC
Confidence 66899999999999999977666531110 013478888744
No 272
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=27.72 E-value=1e+02 Score=28.84 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=58.5
Q ss_pred eeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee----cCCceeE
Q 017770 214 SLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN----AGPVHAY 283 (366)
Q Consensus 214 ~L~~atVt~V~~vGmGD-RVCVDtc-----Sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN----AGaVHaY 283 (366)
...+++|++++.+.-.= ++.+..- .-+.||+=+-| .-.....+|...|||-+- .|-+.=.
T Consensus 151 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l----------~~~~~~~~~~~~R~YSi~s~p~~~~~~i~ 220 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGV----------WLKPEGFPHQEIRQYSLTRKPDGKGYRIA 220 (396)
T ss_dssp SEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEE----------EECCTTCSSCEEEEEECCSCCCSSCEEEE
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEE----------EecCCCCccceeecceeccCCCCCeEEEE
Confidence 45789999999986322 2222221 12445543322 211001123334555442 2444445
Q ss_pred EEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEEE
Q 017770 284 VLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (366)
Q Consensus 284 v~~P--ggkT~YLSE-L~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeAe 333 (366)
|..- |.-|+||.+ |+.||+|.+-...|.-.. -+ -..+|++||=+-
T Consensus 221 Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~~--~~~~~~vlIagG 268 (396)
T 1gvh_A 221 VKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFM---AV--ADDTPVTLISAG 268 (396)
T ss_dssp EECCTTCHHHHHHHHTCCTTCEEEEEEEECSCCC---CC--CTTCCEEEEEEG
T ss_pred EEEcCCCcchHHHHhcCCCCCEEEEEcCCcceEC---CC--CCCCCEEEEecc
Confidence 5553 667999997 999999999887775421 10 136888888543
No 273
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=27.40 E-value=32 Score=30.36 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=35.2
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCce--EEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKT--VFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~--l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+..+.+-+..++.. ....++.+.. ... -+..+-+.++++.+ ++.|+|||++...|.+-++..+.
T Consensus 37 gGv~~iel~~k~~~---~~~~i~~~~~-~~~~~gag~vl~~d~~~~A---~~~GAd~v~~~~~d~~v~~~~~~ 102 (207)
T 2yw3_A 37 EGVGALEITLRTEK---GLEALKALRK-SGLLLGAGTVRSPKEAEAA---LEAGAAFLVSPGLLEEVAALAQA 102 (207)
T ss_dssp TTCCEEEEECSSTH---HHHHHHHHTT-SSCEEEEESCCSHHHHHHH---HHHTCSEEEESSCCHHHHHHHHH
T ss_pred cCCCEEEEeCCChH---HHHHHHHHhC-CCCEEEeCeEeeHHHHHHH---HHcCCCEEEcCCCCHHHHHHHHH
Confidence 44666666555443 2344554444 221 12223355777666 45699999988777655444333
No 274
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: b.86.1.2 d.95.2.2 d.95.2.2 PDB: 1lws_A 1lwt_A 1vde_A 1ef0_A 1um2_A 1jva_A
Probab=27.05 E-value=13 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=26.8
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEE
Q 017770 281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA 315 (366)
Q Consensus 281 HaYv~~PggkT~YLSEL~sG~eVLvVd~~G~tR~a 315 (366)
...|+|++|..+=+.||+.||+||. .||+.|.+
T Consensus 5 ~T~V~~~dG~~k~I~~i~~Gd~v~~--~dg~~~~v 37 (454)
T 1dfa_A 5 GTNVLMADGSIECIENIEVGNKVMG--KDGRPREV 37 (454)
T ss_dssp TCEEEBTTSCEEEGGGCCTTCCBBC--TTSCBCCB
T ss_pred CCeEEeCCCCeeEehhcccCCEEEC--CCCCceEE
Confidence 4678999999999999999999876 45665543
No 275
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.87 E-value=56 Score=23.10 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=43.4
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (366)
..+.++....... ...+.++++..-.. ..-..++..+.. ....++......+.. .+++.|+++++.+|-+
T Consensus 31 ~~~~~~~~~~l~~-~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~ 104 (119)
T 2j48_A 31 LVDGSTALDQLDL-LQPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPLVLFLGEPPVD----PLLTAQASAILSKPLD 104 (119)
T ss_dssp ESCHHHHHHHHHH-HCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCCEEEESSCCSS----HHHHHHCSEECSSCST
T ss_pred ecCHHHHHHHHHh-cCCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCEEEEeCCCCch----hhhhcCHHHhccCCCC
Confidence 4555543332222 24677777543221 222234444332 345566665554433 8889999999999998
Q ss_pred HHHHHH
Q 017770 193 VKAVLA 198 (366)
Q Consensus 193 ~~ev~~ 198 (366)
++++.+
T Consensus 105 ~~~l~~ 110 (119)
T 2j48_A 105 PQLLLT 110 (119)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 887654
No 276
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=26.63 E-value=35 Score=25.54 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC---CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQG---SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~---~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..+.++++..-.. ..--.++..++. ....++..... .+......+++.|+++.+.+|-+++++.+.
T Consensus 48 ~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~~ii~ls~~-~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 116 (130)
T 1dz3_A 48 RPDILLLDIIMPH-LDGLAVLERIRAGFEHQPNVIMLTAF-GQEDVTKKAVELGASYFILKPFDMENLAHH 116 (130)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHHCSSCCEEEEEEET-TCHHHHHHHHHTTCEEEEECSSCCTTHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCcEEEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 4577777543221 111223333321 23345544433 234556778999999999999998876543
No 277
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=26.35 E-value=23 Score=30.86 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCceeEEEe-c-CCceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 278 GPVHAYVLV-P-GGKTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 278 GaVHaYv~~-P-ggkT~YL-SEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|-+.=.+.. | |.-|+|| +.|+.||+|.+....|+..... -..+|+++|=+
T Consensus 73 ~~l~i~vk~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~-----~~~~~~vliag 125 (250)
T 1tvc_A 73 GRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKE-----RGMAPRYFVAG 125 (250)
T ss_dssp CCEEEEECCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCC-----CSSSCEEEEEE
T ss_pred CeEEEEEEECCCCCchHHHHhcCCCCCEEEEEcCccccccCc-----cCCceEEEEEe
Confidence 444445544 3 5579999 5999999999988877653210 12378888854
No 278
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=26.33 E-value=19 Score=31.27 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=24.0
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
.+|.++..|| ||++|..|..+.+..|-.
T Consensus 48 ~al~~~~~G~-VlVvd~~g~~~~a~~G~~ 75 (161)
T 2pcn_A 48 EALETVPPGT-VLVVDGKGSRRVALLGDR 75 (161)
T ss_dssp HHHHHSCTTC-EEEEECTTCCSSEEECHH
T ss_pred HHHHhcCCCC-EEEEECCCCCCceeehHH
Confidence 4888999995 999999999999998853
No 279
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=26.12 E-value=86 Score=30.20 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
..++.++++...-.--.+.+.|.++.. .+..+++ .+.+.++|+.+ .+.|+|+|.+
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l---~~aGaD~I~V 172 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKEL---IENGADGIKV 172 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHH---HHTTCSEEEE
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHH---HHcCcCEEEE
Confidence 457888886542111112223332211 1456774 88999988765 4789999998
No 280
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=25.94 E-value=2.1e+02 Score=27.27 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=44.6
Q ss_pred EecChhhhhhhccccCCCCeEEEeCC-----------CCeeee----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEA 178 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~-----------DW~iIP----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~ 178 (366)
.+.++++...+.. ..+|.+++... +|. +| |..+.+..+..+..||+ .+.+..|+. .+
T Consensus 168 ~v~t~e~A~~a~~--aGaD~I~v~~g~G~~~~~r~~~g~~-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~---kA 241 (351)
T 2c6q_A 168 NVVTGEMVEELIL--SGADIIKVGIGPGSVCTTRKKTGVG-YPQLSAVMECADAAHGLKGHIISDGGCSCPGDVA---KA 241 (351)
T ss_dssp EECSHHHHHHHHH--TTCSEEEECSSCSTTBCHHHHHCBC-CCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHH---HH
T ss_pred eCCCHHHHHHHHH--hCCCEEEECCCCCcCcCccccCCCC-ccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHH---HH
Confidence 5778887555443 35888877421 232 33 23343333333567888 788887765 56
Q ss_pred hhcccCeEEEecC
Q 017770 179 LEQGLGGIVLKVE 191 (366)
Q Consensus 179 LE~G~DGVvl~~~ 191 (366)
|..|+|+|.+-+.
T Consensus 242 lalGA~~V~vG~~ 254 (351)
T 2c6q_A 242 FGAGADFVMLGGM 254 (351)
T ss_dssp HHTTCSEEEESTT
T ss_pred HHcCCCceeccHH
Confidence 7789999998875
No 281
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.58 E-value=1.2e+02 Score=25.77 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHH-HHH
Q 017770 173 QIFLEALEQGLGGIVLKVEDVKAVL-ALK 200 (366)
Q Consensus 173 ~~al~~LE~G~DGVvl~~~d~~ev~-~l~ 200 (366)
+..-..+++++|||++.+.+.+.+. .++
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~~~~~~~~l~ 83 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFNENIIENTLT 83 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHH
Confidence 3444456899999999997666554 443
No 282
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=24.83 E-value=77 Score=29.09 Aligned_cols=33 Identities=24% Similarity=0.056 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 017770 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (366)
Q Consensus 166 v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (366)
+-+.++|+. +++.|+|.|+....|++-++..++
T Consensus 93 Vlt~~~a~~---Ai~AGA~fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 93 ILNGEQALA---AKEAGATFVVSPGFNPNTVRACQE 125 (232)
T ss_dssp CCSHHHHHH---HHHHTCSEEECSSCCHHHHHHHHH
T ss_pred cCCHHHHHH---HHHcCCCEEEeCCCCHHHHHHHHH
Confidence 456666665 556799999988877776655444
No 283
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=24.78 E-value=65 Score=28.97 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.5
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 017770 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (366)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (366)
-+.+-.+.|.|+||+|..+..|.+++.+++.+
T Consensus 125 ~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~ 156 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGTKLDHITQYRRDF 156 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHHHHHHHhC
Confidence 45666777899999999998899998888765
No 284
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=24.67 E-value=80 Score=28.00 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=33.9
Q ss_pred CCeeeehhhhhhcccCCCceEEEE-c----CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 142 DWQVIPAENIVASFQGSGKTVFAI-S----KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a~-v----~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
+|..++ +.+++.++..+-++++- + ++.++++.+ ++.|+|||+ ||+|..+.+
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l---~~~GvdgI~--TD~p~~~~~ 251 (258)
T 2o55_A 196 LFHYLT-KEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKC---LELQVDLIC--SNYPFGLMN 251 (258)
T ss_dssp EGGGCC-HHHHHHHHHTTCEEEEECCTTCCCCHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred ChhhcC-HHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHH---HHcCCCEEE--eCCHHHHHH
Confidence 344554 45677777666666554 4 567766654 679999977 788886644
No 285
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=24.66 E-value=2.4e+02 Score=26.64 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=65.0
Q ss_pred chhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 017770 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (366)
Q Consensus 59 ~K~~vT~ALEsG~~~~vv~~~--~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (366)
+.-.|-.|-..|+|+|+.--. +.+..+++-.++. .-|-. ++++|-+.++++.+... .++.+
T Consensus 115 d~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~-------------~lGl~--~LvEVh~~~El~rAl~~--~a~iI 177 (258)
T 4a29_A 115 KESQIDDAYNLGADTVLLIVKILTERELESLLEYAR-------------SYGME--PLILINDENDLDIALRI--GARFI 177 (258)
T ss_dssp SHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHH-------------HTTCC--CEEEESSHHHHHHHHHT--TCSEE
T ss_pred cHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHH-------------HHhHH--HHHhcchHHHHHHHhcC--CCcEE
Confidence 456677888899999875321 1111222222211 11222 57799999999886653 46677
Q ss_pred EEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 017770 137 VIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 137 vv~~~DW~--iIPl---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
=|+-+|-+ -+-+ ++|...+. .+.-+++ ..++.+|++.+ .+.|+||+|+-.
T Consensus 178 GINNRnL~tf~vdl~~t~~L~~~ip-~~~~~VsESGI~t~~dv~~l---~~~G~~a~LVGe 234 (258)
T 4a29_A 178 GIMSRDFETGEINKENQRKLISMIP-SNVVKVAKLGISERNEIEEL---RKLGVNAFLISS 234 (258)
T ss_dssp EECSBCTTTCCBCHHHHHHHHTTSC-TTSEEEEEESSCCHHHHHHH---HHTTCCEEEECH
T ss_pred EEeCCCccccccCHHHHHHHHhhCC-CCCEEEEcCCCCCHHHHHHH---HHCCCCEEEECH
Confidence 77766543 1222 33444432 2334455 45688888765 478999999853
No 286
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=24.63 E-value=83 Score=27.78 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 017770 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (366)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~vv~~ 78 (366)
.+.+.+|+|| .+++.+...++. +|+|+.+.
T Consensus 196 ~~G~~v~~wTvn~~~~~~~l~~~-vdgIiTD~ 226 (234)
T 1o1z_A 196 KKGIVIFVWTLNDPEIYRKIRRE-IDGVITDE 226 (234)
T ss_dssp HTTCEEEEESCCCHHHHHHHGGG-CSEEEESC
T ss_pred HcCCEEEEeCCCCHHHHHHHHHh-CCEEEcCC
Confidence 4667899999 678899999999 99999865
No 287
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=24.37 E-value=1.5e+02 Score=24.33 Aligned_cols=70 Identities=10% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~---~d~~ev~~l~~~~ 203 (366)
..+.++++..-.. ..--.++.++. .....+...+.+.. ......+++.|+|+++.+| +....+..+.+.+
T Consensus 25 ~~dlvl~D~~~p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 25 KPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp CCSCEEEECCSTT-SSHHHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHh
Confidence 4577777543221 11223444422 11223433333322 5566788999999999998 5556555555554
No 288
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=24.35 E-value=19 Score=32.40 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=27.9
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|--|+||++|+.||+|.+-...|+.-... .-..+|+++|=+
T Consensus 116 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 156 (304)
T 2bmw_A 116 GVCSTYLTHIEPGSEVKITGPVGKEMLLP----DDPEANVIMLAG 156 (304)
T ss_dssp CHHHHHHHTCCTTCEEEEEEEECSSSCCC----SCTTCEEEEEEE
T ss_pred cchhhHHhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEec
Confidence 33689999999999999987777542100 012478888743
No 289
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=24.34 E-value=52 Score=27.29 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=45.1
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-..... ...+.++++..-+.. .--.++..+. .....++......+ ......+++.|++|++.+|-++
T Consensus 36 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~ 112 (233)
T 1ys7_A 36 TAVDGAEALRSATE-NRPDAIVLDINMPVL-DGVSVVTALRAMDNDVPVCVLSARSS-VDDRVAGLEAGADDYLVKPFVL 112 (233)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESSCSSS-CHHHHHHHHHHTTCCCCEEEEECCCT-TTCCCTTTTTTCSEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCC-CHHHHHHHHHhcCCCCCEEEEEcCCC-HHHHHHHHHcCCCEEEeCCCCH
Confidence 34555543332222 346777775543221 1122333332 23455665554332 3345678899999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 113 ~~L~~~ 118 (233)
T 1ys7_A 113 AELVAR 118 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 290
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.33 E-value=81 Score=24.28 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=27.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 017770 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (366)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (366)
..++....+. +......+++.|+++.+.+|-+++++.+.
T Consensus 91 ~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~ 129 (143)
T 3m6m_D 91 TPVVVLSADV-TPEAIRACEQAGARAFLAKPVVAAKLLDT 129 (143)
T ss_dssp CCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CeEEEEeCCC-CHHHHHHHHHcChhheeeCCCCHHHHHHH
Confidence 3455544432 23345678899999999999999877654
No 291
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=24.14 E-value=31 Score=33.36 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCceeeeeeccCCCeEEE-E-cCCCCeeEEeeeeEEEeccceEEE
Q 017770 288 GGKTCYLSELKSGKEVIV-V-DQKGRQRTAVVGRVKIESRPLILV 330 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLv-V-d~~G~tR~a~VGRvKIE~RPLlLI 330 (366)
|--|+||.+|+.||.|-+ | ...|.-+.-. -..+|++||
T Consensus 207 G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~-----~~~~piImI 246 (393)
T 4dql_A 207 GIASNYLAELQEGDTITCFISTPQSEFTLPK-----DPETPLIMV 246 (393)
T ss_dssp CHHHHHHHHCCTTCEEEEEEECCSSCCCCCS-----STTSCEEEE
T ss_pred CccchhHHhCCCcCEEEEEEEcCCCCcccCc-----cCCCCeEEE
Confidence 446899999999999985 3 4566543210 125788887
No 292
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=24.11 E-value=59 Score=26.93 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHH
Q 017770 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (366)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~~l 199 (366)
...++...... +......+++.|++|.+.+|- +++++.+.
T Consensus 68 ~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~ 108 (223)
T 2hqr_A 68 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVAR 108 (223)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHHTCSEEEETTCSCTHHHHHH
T ss_pred CCcEEEEECCC-CHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 45666555443 345667888999999999999 98877554
No 293
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=24.06 E-value=1.1e+02 Score=26.06 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=39.2
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 017770 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (366)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA----~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (366)
.++++.++.+. ...++.+|+-..|- -.|+.+ +-.+.+.++++.+.+.+.++.+. +.|+|-|+.
T Consensus 58 ~~~~~~l~~a~--i~~ad~vi~~~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~---~~G~~~vi~ 124 (234)
T 2aef_A 58 PTRVSDLEKAN--VRGARAVIVDLESD----SETIHCILGIRKIDESVRIIAEAERYENIEQLR---MAGADQVIS 124 (234)
T ss_dssp TTCHHHHHHTT--CTTCSEEEECCSCH----HHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHH---HHTCSEEEC
T ss_pred CCCHHHHHhcC--cchhcEEEEcCCCc----HHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHH---HCCCCEEEC
Confidence 34555554432 35678888865542 334432 22234458999999999987654 579997653
No 294
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=23.92 E-value=3.2e+02 Score=22.90 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=42.5
Q ss_pred eecCCCCCCceEEEecc-CceEEEEeeccccCCCCCCCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCC
Q 017770 235 DLCSLMRPGEGLLVGSF-ARGLFLVHSECLESNYIASRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKG 310 (366)
Q Consensus 235 DtcSll~~GEGmLVGS~-S~glFLVhsEt~es~Yva~RPFRVNAG---aVHaYv~~PggkT~YLSEL~sG~eVLvVd~~G 310 (366)
||.-.+.++.-++|-+. ...+.++..++.+. --+++.+ .+|+....|+|+.-|.+. .....|.++|.+.
T Consensus 2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~t 74 (349)
T 1jmx_B 2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTV------YKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDT 74 (349)
T ss_dssp --CCCCCTTCEEEEEEETTTEEEEEETTTTEE------EEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETTT
T ss_pred CccccccCCCEEEEEeCCCCeEEEEECCCCcE------EEEEecCCCCCCceeEECCCCCEEEEEe-CCCCcEEEEeCCC
Confidence 67777788777666554 44555555444221 1122322 367778889999888886 3345788888764
Q ss_pred Ce
Q 017770 311 RQ 312 (366)
Q Consensus 311 ~t 312 (366)
..
T Consensus 75 ~~ 76 (349)
T 1jmx_B 75 CK 76 (349)
T ss_dssp TE
T ss_pred Cc
Confidence 33
No 295
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=23.58 E-value=1.1e+02 Score=23.46 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=40.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (366)
...+.++.-.... ....+.++++..-.. +.--.++..+. .....++...... +...+..+++.|+++.+.+|-++
T Consensus 34 ~~~~~~~al~~~~-~~~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~ 110 (141)
T 3cu5_A 34 QADDGINAIQIAL-KHPPNVLLTDVRMPR-MDGIELVDNILKLYPDCSVIFMSGYS-DKEYLKAAIKFRAIRYVEKPIDP 110 (141)
T ss_dssp EESSHHHHHHHHT-TSCCSEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEECCST-TTCCC------CCCEEECSSCCH
T ss_pred ecccHHHHHHHHh-cCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEeCCC-cHHHHHHHHhCCccEEEeCCCCH
Confidence 3455544333222 134677777543221 22223444332 2345666655443 33455678899999999999999
Q ss_pred HHHHHH
Q 017770 194 KAVLAL 199 (366)
Q Consensus 194 ~ev~~l 199 (366)
+++.+.
T Consensus 111 ~~L~~~ 116 (141)
T 3cu5_A 111 SEIMDA 116 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877553
No 296
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=23.50 E-value=25 Score=31.43 Aligned_cols=28 Identities=43% Similarity=0.625 Sum_probs=24.1
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
.+|.+...|+ ||++|..|..+.+.+|-.
T Consensus 79 ~al~~~~~G~-VlVvd~~g~~~~A~~G~~ 106 (183)
T 1nxj_A 79 SVLSQPSAGG-VLVIDGAGSLHTALVGDV 106 (183)
T ss_dssp HHHHSCCSSC-EEEEECTTCCSSEEECHH
T ss_pred HHHHhcCCCC-EEEEECCCCCCceeeHHH
Confidence 5888999995 999999999999998853
No 297
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=23.39 E-value=97 Score=30.98 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 017770 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (366)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (366)
..++.++++.....---+.++|.++... +..|++ .+.+.++|+.+. +.|+|+|++.
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~---~aGaD~I~Vg 300 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALI---EAGVSAVKVG 300 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHH---HHTCSEEEEC
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHH---HhCCCEEEEC
Confidence 3588899887654322233444444322 234544 588888887665 6799999984
No 298
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=22.76 E-value=33 Score=30.52 Aligned_cols=57 Identities=16% Similarity=0.326 Sum_probs=36.8
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 017770 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (366)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (366)
.+.+-. ++..+. +.++++++..+-++++ .+++.++++.+ ++.|+|||+ ||+|+.+.+
T Consensus 189 ~~~i~~---~~~~~~-~~~v~~~~~~G~~v~~wTvn~~~~~~~l---~~~GvdgIi--TD~P~~~~~ 246 (252)
T 2pz0_A 189 AYSLHP---FYFNII-PELVEGCKKNGVKLFPWTVDRKEDMERM---IKAGVDGII--TDDPETLIN 246 (252)
T ss_dssp CSEEEE---BGGGCC-HHHHHHHHHTTCEECCBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred CeEEec---chhcCC-HHHHHHHHHCCCEEEEECCCCHHHHHHH---HHcCCCEEE--cCCHHHHHH
Confidence 444444 445554 5667777766656554 36777766654 678999976 788886654
No 299
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=22.60 E-value=3.5e+02 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=19.3
Q ss_pred CCCcEEEEEeCchhHHHHHHHhCC---cEEEEcCc
Q 017770 48 SKPKRVWIWTESKQVMTAAVERGW---NTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~~~K~~vT~ALEsG~---~~~vv~~~ 79 (366)
++...+||+- +..|..||++|. ..+++.++
T Consensus 8 ~~~~~~~veG--~~~V~eal~~~~~~i~~l~~~~~ 40 (253)
T 1gz0_A 8 GSHMSEMIYG--IHAVQALLERAPERFQEVFILKG 40 (253)
T ss_dssp ----CEEEES--HHHHHHHHHSCGGGEEEEEEESS
T ss_pred CCCCcEEEEE--HHHHHHHHhcCCCCeEEEEEECC
Confidence 3444566665 999999999984 45666653
No 300
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=22.21 E-value=22 Score=29.39 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=21.4
Q ss_pred CceEEEeccCceE------------------EEEeeccccCCCCC
Q 017770 243 GEGLLVGSFARGL------------------FLVHSECLESNYIA 269 (366)
Q Consensus 243 GEGmLVGS~S~gl------------------FLVhsEt~es~Yva 269 (366)
.--+.|||+..|+ +|+|+||....|++
T Consensus 18 ~p~~~v~~f~pGl~~P~~t~F~lY~kk~~~e~lLhgEt~rLdY~g 62 (102)
T 3nfg_A 18 DPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDG 62 (102)
T ss_dssp SCCCEEEECCTTCCCCTTCEEEEEEECCCCCEEEEEECSSEEEEE
T ss_pred CCCEEEEeccCCccCCCCceeEeeecCCCcceEEEeCCCceEEEe
Confidence 4457889999888 88999997777854
No 301
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=22.11 E-value=3e+02 Score=26.22 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCCeEEEeCCCC----------eeeehhhhhhcc---------cCCCceEEEEcCCH-----HHHH-HHHHHhhcccCeE
Q 017770 132 QAENIVIDLPDW----------QVIPAENIVASF---------QGSGKTVFAISKTP-----SEAQ-IFLEALEQGLGGI 186 (366)
Q Consensus 132 ~~~~vvv~~~DW----------~iIPlENliA~~---------q~~~~~l~a~v~~~-----~eA~-~al~~LE~G~DGV 186 (366)
.+.-+-|+...| +++|.|..++++ .+.+--|+|..... +||- -+.--.|.|+|+|
T Consensus 116 Gaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~i 195 (307)
T 3lye_A 116 GVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVG 195 (307)
T ss_dssp TCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEE
T ss_pred CCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEE
Confidence 456677777766 389998866554 14456788887764 3443 3334478999999
Q ss_pred EEec-CCHHHHHHHHHhh
Q 017770 187 VLKV-EDVKAVLALKEYF 203 (366)
Q Consensus 187 vl~~-~d~~ev~~l~~~~ 203 (366)
.+.. .|+++++++.+.+
T Consensus 196 fi~~~~~~~~~~~i~~~~ 213 (307)
T 3lye_A 196 LLEGFRSKEQAAAAVAAL 213 (307)
T ss_dssp EECCCSCHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHc
Confidence 9863 6788888877765
No 302
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.99 E-value=3e+02 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.2
Q ss_pred CCceeeeeecc-CCCeEEEEcCCCCeeEEee
Q 017770 288 GGKTCYLSELK-SGKEVIVVDQKGRQRTAVV 317 (366)
Q Consensus 288 ggkT~YLSEL~-sG~eVLvVd~~G~tR~a~V 317 (366)
-|....|.|+= .|+++||++..|+.|.+-.
T Consensus 158 ~Gev~tv~E~l~d~~R~lV~~~~~eerVv~l 188 (251)
T 3m9b_A 158 VGEISTLREILADGHRALVVGHADEERVVWL 188 (251)
T ss_dssp CSEEEEEEEECTTSSEEEEECSSSCEEEEEC
T ss_pred cccEEEEEEEecCCCEEEEecCCCceEEEEe
Confidence 46678889988 6689999999999988754
No 303
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=21.82 E-value=24 Score=32.38 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.0
Q ss_pred cCCc--eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 287 PGGK--TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 287 Pggk--T~YLS-EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|+|+ |+||. .|+.||+|.+-...|..... -..+|+++|=+
T Consensus 77 ~~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~------~~~~~~vliag 119 (321)
T 2pia_A 77 SNGRGGSISFIDDTSEGDAVEVSLPRNEFPLD------KRAKSFILVAG 119 (321)
T ss_dssp TTSCSHHHHHHHSCCTTCEEEECCCBCCSCCC------TTCSEEEEEEE
T ss_pred cCCcchhHHHHhcCCCCCEEEEeCCccccccC------CCCCCEEEEEe
Confidence 6675 99999 89999999998777754211 12577887744
No 304
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=21.80 E-value=1.2e+02 Score=22.57 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=26.9
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEE
Q 017770 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (366)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIe 331 (366)
.++.|.++-++|..+..+.|+|-.|+... ..++|.
T Consensus 12 ~F~vGmkLEa~d~~~p~~~AtV~~v~~~~-~~~~Vh 46 (69)
T 3sd4_A 12 SFEVGAQLEARDRLKNWYPAHIEDIDYEE-GKVLIH 46 (69)
T ss_dssp CCSTTCEEEEECTTSCEEEEEEEEEETTT-TEEEEE
T ss_pred CcCCCCEEEEEECCCCccccEEEEEeccC-CEEEEE
Confidence 47889999999999999999998885322 334543
No 305
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=21.71 E-value=47 Score=30.01 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=47.3
Q ss_pred eEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEeee---e---EEEec---------cceEEEEEEeeccCCCcee
Q 017770 282 AYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVG---R---VKIES---------RPLILVEAKALALAGHSEP 343 (366)
Q Consensus 282 aYv~~PggkT~YLS---EL~sG~eVLvVd~~G~tR~a~VG---R---vKIE~---------RPLlLIeAe~~~~~~g~~~ 343 (366)
..+..+|...+||. -++.||+|.+.|.+| .-.+.|- + ++|.. -++-|+-|-. .|++.
T Consensus 11 ~~~~L~~~~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~~~~~~i~~~~~~~~~~~~~v~L~~al~----K~~r~ 85 (228)
T 1v6z_A 11 LTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALL----KGDKL 85 (228)
T ss_dssp GCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCSSCEEEEEEEECCCCSCSSCEEEEEECC----STTHH
T ss_pred CEEEeCHHHHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCCeEEEEEEEEeccccCCCccEEEEEEec----chHHH
Confidence 45667888999984 578999999999999 6666552 2 12211 0133444443 56667
Q ss_pred eEEEeeccccCCCce
Q 017770 344 SLFLWFLVCTSSSLI 358 (366)
Q Consensus 344 sviLQnA~~~~~~~~ 358 (366)
..++|.|.+++-..|
T Consensus 86 e~ilqkatELGv~~I 100 (228)
T 1v6z_A 86 AEVVRAATELGATRI 100 (228)
T ss_dssp HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhhCCCEE
Confidence 778888888876643
No 306
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national project on protein struc functional analyses; HET: COA; 2.10A {Thermus thermophilus}
Probab=21.62 E-value=68 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 017770 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (366)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvK 321 (366)
....+|+.+++.||.|.+ +++..-+||-+
T Consensus 51 ~~~i~f~~pv~~gd~l~v-----~~~v~~~g~~s 79 (133)
T 2eis_A 51 ADAVDFKRPVPLGAIVEL-----VARLKEVGRTS 79 (133)
T ss_dssp EEEEEECSCCBTTCEEEE-----EEEEEEECSSE
T ss_pred EccEEEcccccCCCEEEE-----EEEEEEeCCcE
Confidence 347899999999999887 45555555533
No 307
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=21.60 E-value=75 Score=26.66 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=21.8
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 017770 291 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (366)
Q Consensus 291 T~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKI 322 (366)
-+.|.+|+.||+|.+-+.++ +.+=.|-++++
T Consensus 70 F~~L~~l~~GD~i~v~~~~~-~~~Y~V~~~~v 100 (147)
T 2ln7_A 70 FTDLGQLKEKDTLVLEYDNK-TYTYEIQKIWI 100 (147)
T ss_dssp SSHHHHSSTTCEEEEEETTE-EEEEEEEEEEE
T ss_pred hhhhhcccCCCEEEEEECCc-EEEEEEEeEEE
Confidence 45699999999998876554 55555555554
No 308
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=21.27 E-value=2.1e+02 Score=24.84 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=49.7
Q ss_pred eEEEEEecCh--hhhhhhcc--ccCCCCeEEEe------CCCCeeee---------------hhhhhhcccCC-CceEEE
Q 017770 111 VGSIIEVSTP--QELQQLQP--ADGQAENIVID------LPDWQVIP---------------AENIVASFQGS-GKTVFA 164 (366)
Q Consensus 111 v~~~~~v~~~--ed~e~~~~--~~~~~~~vvv~------~~DW~iIP---------------lENliA~~q~~-~~~l~a 164 (366)
+..++.-.++ ++..+.+. ..+ ++++-+. ..|-..|| .-.+|.++... +..+..
T Consensus 7 ~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~ 85 (248)
T 1geq_A 7 LIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVL 85 (248)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 3445444555 33333222 224 8888887 44555555 13344544332 233444
Q ss_pred EcC-CHH----HHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 017770 165 ISK-TPS----EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (366)
Q Consensus 165 ~v~-~~~----eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (366)
... +.- ..+.+-.+++.|+|||++......+..++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 86 MTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp EECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHH
T ss_pred EeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHH
Confidence 432 330 0233445567899999999877776666666553
No 309
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=21.27 E-value=4.9e+02 Score=24.47 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEc--C-CHHHHHHHH-HHhhcccCeEEEe-----cCCHHH-HHHHHH
Q 017770 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--K-TPSEAQIFL-EALEQGLGGIVLK-----VEDVKA-VLALKE 201 (366)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v--~-~~~eA~~al-~~LE~G~DGVvl~-----~~d~~e-v~~l~~ 201 (366)
.+|+|-..... =-++.+++.. +..|++.= + +.+|+-... ++++.|++|+++- .+||.+ +++|.+
T Consensus 202 GAD~VKt~~t~---e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ 275 (295)
T 3glc_A 202 GAQIIKTYYVE---KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQA 275 (295)
T ss_dssp TCSEEEEECCT---TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred CCCEEEeCCCH---HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHH
Confidence 57888776431 1246666542 34455543 2 445554443 7889999999874 457744 555555
Q ss_pred hhc
Q 017770 202 YFD 204 (366)
Q Consensus 202 ~~~ 204 (366)
++.
T Consensus 276 ivh 278 (295)
T 3glc_A 276 VVH 278 (295)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 310
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.80 E-value=3.4e+02 Score=25.07 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCcEEEEEeC---chhHHHHHHHhCCcEEEEc-Cc--chhhhhhccceeeeeeeeecCCcc---cc----CCCCeeEEEE
Q 017770 49 KPKRVWIWTE---SKQVMTAAVERGWNTFVFL-SE--NQQLAIDWSTIALLDPLFIKEGEV---YD----SGDRRVGSII 115 (366)
Q Consensus 49 ~~K~vWiw~~---~K~~vT~ALEsG~~~~vv~-~~--~~~~~~~l~~i~~i~~l~~~~g~~---~~----~~gk~v~~~~ 115 (366)
..+.|-|+-- ---.+..|...|+..+++. .. ..++++++|--..++. .+.+. +. ..+..+-..+
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~---~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDP---SAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECT---TSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECC---CCcCHHHHHHhhhhccCCCCCEEE
Confidence 4456777653 2334566667788554433 21 2455556554333322 12211 11 1111334455
Q ss_pred EecC-hhhhhhhccccCCCCeEEEeCCC----CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhccc
Q 017770 116 EVST-PQELQQLQPADGQAENIVIDLPD----WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGL 183 (366)
Q Consensus 116 ~v~~-~ed~e~~~~~~~~~~~vvv~~~D----W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~ 183 (366)
+..+ ++.++.....+.....+++-+.. .--+|+-.++.. +-++........+-+.+++.++.|-
T Consensus 259 d~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~l~~~g~ 327 (370)
T 4ej6_A 259 ECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFR----ELRVLGSFINPFVHRRAADLVATGA 327 (370)
T ss_dssp ECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHT----TCEEEECCSCTTCHHHHHHHHHTTC
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhC----CcEEEEeccChHHHHHHHHHHHcCC
Confidence 5555 55666655555555555543321 123455555443 3456655555566777777777774
No 311
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.75 E-value=1.9e+02 Score=26.59 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=64.2
Q ss_pred ChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhccc---------------
Q 017770 119 TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGL--------------- 183 (366)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~--------------- 183 (366)
+.++++.+... ..+...++ =+.--+=|+++. ++++-|+..--+-+|.+..-.+|...+
T Consensus 75 ~d~e~~~l~~~--~v~V~~~~---~~~~alGnli~~--Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~ 147 (222)
T 4adx_I 75 MDREIDALAAA--GVEAVRIP---ERFTAVGNLVLA--NDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMG 147 (222)
T ss_pred CHHHHHHHHhc--CCeEEEEC---CCcceeEEEEEE--cCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEE
Confidence 44555555541 23333332 244456688886 667777777777788888877765443
Q ss_pred ----CeEEEecCC-HHHHHHHHHhhcccccccceeeeeEEEEE-EEEEcCCcc
Q 017770 184 ----GGIVLKVED-VKAVLALKEYFDGRNEVSNLLSLMKATVT-RVDVAGMGD 230 (366)
Q Consensus 184 ----DGVvl~~~d-~~ev~~l~~~~~~~~~~~~~l~L~~atVt-~V~~vGmGD 230 (366)
.|.+++|+- .++++++++++ .+++...||- .+.-||+|-
T Consensus 148 v~nn~G~lVhP~~s~ee~~~i~~~L--------~V~v~~GTvn~G~~~VGsg~ 192 (222)
T 4adx_I 148 AATNRGALLNPQASSEEIGIIEDTL--------GVEADVGTVNHGVTLIGACS 192 (222)
T ss_pred EEeCceEEECCCCCHHHHHHHHHHh--------CCCEEEeeecCCCCceeEEE
Confidence 366778875 56788888888 5888889985 888888763
No 312
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.71 E-value=4e+02 Score=22.81 Aligned_cols=110 Identities=10% Similarity=0.115 Sum_probs=59.5
Q ss_pred CchhHHHHHHHhCCcEEEEc-------Cc---chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh-hhhh
Q 017770 58 ESKQVMTAAVERGWNTFVFL-------SE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE-LQQL 126 (366)
Q Consensus 58 ~~K~~vT~ALEsG~~~~vv~-------~~---~~~~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed-~e~~ 126 (366)
.-.+.+..+.+.|+|.+=+. +. ..+.++++.+.. +..+.+.+.+.++++ .+.+
T Consensus 24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~----------------~~~~~v~l~vnd~~~~v~~~ 87 (230)
T 1rpx_A 24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT----------------DLPLDVHLMIVEPDQRVPDF 87 (230)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC----------------CSCEEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhcc----------------CCcEEEEEEecCHHHHHHHH
Confidence 45788999999999965443 11 023444443321 223334456677653 3333
Q ss_pred ccccCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec
Q 017770 127 QPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV 190 (366)
Q Consensus 127 ~~~~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~G~DGVvl~~ 190 (366)
.. ..++.+.+... .-.- ++.++.++.+.+.++...+ .+..|+ +..+..|+|-|++.+
T Consensus 88 -~~-~Gad~v~vh~~~~~~~~--~~~~~~~~~~~g~~ig~~~~p~t~~e~---~~~~~~~~d~vl~~~ 148 (230)
T 1rpx_A 88 -IK-AGADIVSVHCEQSSTIH--LHRTINQIKSLGAKAGVVLNPGTPLTA---IEYVLDAVDLVLIMS 148 (230)
T ss_dssp -HH-TTCSEEEEECSTTTCSC--HHHHHHHHHHTTSEEEEEECTTCCGGG---GTTTTTTCSEEEEES
T ss_pred -HH-cCCCEEEEEecCccchh--HHHHHHHHHHcCCcEEEEeCCCCCHHH---HHHHHhhCCEEEEEE
Confidence 22 46888888776 4321 2455666544444555555 344443 233456788775543
No 313
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=20.48 E-value=99 Score=28.61 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=25.2
Q ss_pred CCCcEEEEEeC-c----------hhHHHHHHHhCCcEEEEcCc
Q 017770 48 SKPKRVWIWTE-S----------KQVMTAAVERGWNTFVFLSE 79 (366)
Q Consensus 48 ~~~K~vWiw~~-~----------K~~vT~ALEsG~~~~vv~~~ 79 (366)
.+-+.||+||- + .+.+...++.|+|+|+.+..
T Consensus 226 ~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIiTD~P 268 (292)
T 3mz2_A 226 ERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRP 268 (292)
T ss_dssp HTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEESCH
T ss_pred HCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEEeCCH
Confidence 46678999982 2 35888999999999998664
No 314
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=20.35 E-value=31 Score=30.50 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=23.9
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 017770 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (366)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~a~VGRv 320 (366)
.+|.+...| .||++|..|..+.+.+|-.
T Consensus 53 ~al~~~~~G-~VlVvd~~g~~~~A~~G~~ 80 (174)
T 1vi4_A 53 DVLSQNGKG-KVLVVDGHGSCHKALMGDQ 80 (174)
T ss_dssp HHHTSCCTT-EEEEEECTTCCSSEEECHH
T ss_pred HHHhccCCC-EEEEEECCCCCCceehHHH
Confidence 588888888 7999999999999998853
No 315
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=20.34 E-value=1.5e+02 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.8
Q ss_pred ceeeeeeccCCCeEEEEcC
Q 017770 290 KTCYLSELKSGKEVIVVDQ 308 (366)
Q Consensus 290 kT~YLSEL~sG~eVLvVd~ 308 (366)
+....++|+.||.|++.+.
T Consensus 107 ~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 107 QWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEEGGGCCTTCEEEEEET
T ss_pred EEEEHHHCCCCCEEEeccC
Confidence 7778899999999999874
No 316
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=20.30 E-value=1e+02 Score=31.41 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 017770 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (366)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (366)
..|..-...+|+.|+|||+++ .++++++.++++++..
T Consensus 193 ~~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~ 230 (500)
T 1a3w_A 193 EKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGE 230 (500)
T ss_dssp HHHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 356667778899999999998 5789999999998854
No 317
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=20.30 E-value=2.5e+02 Score=26.27 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=44.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeC-----------CCCeeee---hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHh
Q 017770 116 EVSTPQELQQLQPADGQAENIVIDL-----------PDWQVIP---AENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL 179 (366)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~-----------~DW~iIP---lENliA~~q~~~~~l~a--~v~~~~eA~~al~~L 179 (366)
.+.++|+.+.+.. ..++.+++.. .+|- +| ++-|....+..+..||+ .+.+.+|+..++.
T Consensus 156 ~v~s~e~A~~a~~--aGad~Ivvs~hgG~~~~~~~~~~~g-~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-- 230 (336)
T 1ypf_A 156 NVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFG-TGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-- 230 (336)
T ss_dssp EECSHHHHHHHHH--HTCSEEEECSSCSTTCHHHHHHSCS-STTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH--
T ss_pred CcCCHHHHHHHHH--cCCCEEEEecCCCceeecccccCcC-CchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH--
Confidence 4788887555543 3578888832 1222 12 33332222223567888 8899999877664
Q ss_pred hcccCeEEEecC
Q 017770 180 EQGLGGIVLKVE 191 (366)
Q Consensus 180 E~G~DGVvl~~~ 191 (366)
.|+|+|.+-+.
T Consensus 231 -lGAdaV~iGr~ 241 (336)
T 1ypf_A 231 -FGATMVMIGSL 241 (336)
T ss_dssp -TTCSEEEESGG
T ss_pred -cCCCEEEeChh
Confidence 59999998776
No 318
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=20.19 E-value=1.8e+02 Score=27.42 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=38.8
Q ss_pred cCCCCCCCCeeeecCCceeEEEe--cCCceee--ee---eccCCC-eEEE-EcCCCCeeEEeeeeEEE
Q 017770 264 ESNYIASRPFRVNAGPVHAYVLV--PGGKTCY--LS---ELKSGK-EVIV-VDQKGRQRTAVVGRVKI 322 (366)
Q Consensus 264 es~Yva~RPFRVNAGaVHaYv~~--PggkT~Y--LS---EL~sG~-eVLv-Vd~~G~tR~a~VGRvKI 322 (366)
+.|..+.+++.++.|..|.-..+ .++...- |. -+..|| ++.+ -+-++++|.+=.|.++|
T Consensus 336 ~~~l~~~~~~~~~~gt~~~~~~v~~~~~~~~~~~l~~p~~~~~g~~r~~i~r~~~~~~r~~g~g~i~~ 403 (403)
T 3sjy_A 336 VDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLVEI 403 (403)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEECSSEEEEEEEEEEECCSSSCEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCCCCCEEEEEECccEEEEEEEEecCceEEEEeCCcEeeccCCEEEEEEEEeCCcEEEEEEEEEEC
Confidence 45677788889999988876554 2332111 11 256798 7766 45777888888888775
No 319
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=20.19 E-value=31 Score=31.21 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=59.3
Q ss_pred eeeEEEEEEEEEcCC----cceEEEeec--C--CCCCCceEEEeccCceEEEEeecccc---CCCCCCCCeeeec-----
Q 017770 214 SLMKATVTRVDVAGM----GDRVCVDLC--S--LMRPGEGLLVGSFARGLFLVHSECLE---SNYIASRPFRVNA----- 277 (366)
Q Consensus 214 ~L~~atVt~V~~vGm----GDRVCVDtc--S--ll~~GEGmLVGS~S~glFLVhsEt~e---s~Yva~RPFRVNA----- 277 (366)
....++|++++.+.- .|-..+-.. . -+.||+ +++|-...... ......|||-+--
T Consensus 27 ~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ---------~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 97 (311)
T 3lo8_A 27 EPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQ---------SYGVIPPGENPKKPGAPQNVRLYSIASTRYGD 97 (311)
T ss_dssp BCEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTC---------EEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred CCeEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCC---------EEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence 346899999999873 444333322 1 234444 23332211100 0112467776643
Q ss_pred ----CCceeEEEe--------------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceEEEEE
Q 017770 278 ----GPVHAYVLV--------------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (366)
Q Consensus 278 ----GaVHaYv~~--------------P-ggkT~YLSEL~sG~eVLvVd~~G~tR~a~VGRvKIE~RPLlLIeA 332 (366)
|-++=+|.. | |.-|+||.+|+.||+|.+-...|..-... . .-..+|+++|=+
T Consensus 98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~--~-~~~~~~~vlIag 168 (311)
T 3lo8_A 98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLP--E-EDPNATHIMIAT 168 (311)
T ss_dssp TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCC--C-SCTTCEEEEEEE
T ss_pred CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCC--C-cCCCCCEEEEEC
Confidence 345556653 3 44689999999999999977776542110 0 013578888754
No 320
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=20.18 E-value=52 Score=30.27 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=46.9
Q ss_pred eEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEeee-------eEEEec------c-c--eEEEEEEeeccCCCce
Q 017770 282 AYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVG-------RVKIES------R-P--LILVEAKALALAGHSE 342 (366)
Q Consensus 282 aYv~~PggkT~YLS---EL~sG~eVLvVd~~G~tR~a~VG-------RvKIE~------R-P--LlLIeAe~~~~~~g~~ 342 (366)
..+..++...+||. -++.||+|.+.|.+|..-.+.|- .++|.. . | +.|+-|-. .|++
T Consensus 18 ~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~~~l~L~~al~----K~~r 93 (257)
T 1vhy_A 18 TQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVIS----RGER 93 (257)
T ss_dssp SEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEECCCCCSSCEEEEEEC--------C
T ss_pred CEEEeCHHHHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEEEecccCCCCceEEEEEecC----chHH
Confidence 56778899999985 57899999999999876665552 122221 1 1 23333333 5677
Q ss_pred eeEEEeeccccCCCce
Q 017770 343 PSLFLWFLVCTSSSLI 358 (366)
Q Consensus 343 ~sviLQnA~~~~~~~~ 358 (366)
...++|.|.+++-..|
T Consensus 94 ~e~ilqkatELGv~~I 109 (257)
T 1vhy_A 94 MEFTIQKSVELGVNVI 109 (257)
T ss_dssp CHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhhCcCEE
Confidence 7788888888887643
No 321
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=20.14 E-value=27 Score=31.56 Aligned_cols=29 Identities=10% Similarity=-0.149 Sum_probs=20.4
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017770 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (366)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev 196 (366)
.+-+.++++.++ +.|+|||++...|++-+
T Consensus 84 tvl~~d~~~~A~---~aGAd~v~~p~~d~~v~ 112 (225)
T 1mxs_A 84 TVLDRSMFAAVE---AAGAQFVVTPGITEDIL 112 (225)
T ss_dssp CCCSHHHHHHHH---HHTCSSEECSSCCHHHH
T ss_pred eEeeHHHHHHHH---HCCCCEEEeCCCCHHHH
Confidence 344667777654 56999999887776544
Done!