BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017771
(366 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/363 (79%), Positives = 321/363 (88%), Gaps = 7/363 (1%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTE------TSSEENS-KKDPLKFVTWNANSLL 53
MKRFFKPIEK+ SAKKP LS +++D E E T++ N+ KK+PLKF+TWNANSLL
Sbjct: 1 MKRFFKPIEKDGSAKKPTLSTNQEDNEKKEASESEETNNNGNTMKKEPLKFITWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LRVKNNWP FS F++ DPDVI +QEVRMPAAGSK APKN E+KDDT +SREEK ILMR
Sbjct: 61 LRVKNNWPGFSKFVSDIDPDVIVIQEVRMPAAGSKGAPKNSGEIKDDTNSSREEKKILMR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 173
ALSS PF NY +WWSLADSKYAGTALLVKKCFQP KVSF+L++TA K+EPDGRVILAEF+
Sbjct: 121 ALSSSPFGNYNVWWSLADSKYAGTALLVKKCFQPVKVSFALDQTASKHEPDGRVILAEFK 180
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233
TF LLNTYAPNNGWKEEE SFQRRRKWDKR+ E V+Q S KPLIWCGDLNVSHEEIDVSH
Sbjct: 181 TFRLLNTYAPNNGWKEEEKSFQRRRKWDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSH 240
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 293
PEFF+AAK+NGYVPPNKED GQPGFT++ERKRFGAILKEG+LIDAYRFLHKE+DM+ GFS
Sbjct: 241 PEFFSAAKVNGYVPPNKEDCGQPGFTLSERKRFGAILKEGKLIDAYRFLHKERDMERGFS 300
Query: 294 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 353
WSGNPIGKYRGKRMRID+FIVSE+LKDRII CEM GHGIELEGFYGSDHCPVSLELS AS
Sbjct: 301 WSGNPIGKYRGKRMRIDFFIVSEKLKDRIIQCEMHGHGIELEGFYGSDHCPVSLELSPAS 360
Query: 354 SDS 356
DS
Sbjct: 361 PDS 363
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/358 (77%), Positives = 313/358 (87%), Gaps = 2/358 (0%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKR+F+PI K+ S+KKP+LS D T + S EE KK+PLKF+TWNANS L+RVKNNW
Sbjct: 1 MKRYFQPIGKDGSSKKPSLSKEDGDENTDQVSEEE--KKEPLKFLTWNANSFLIRVKNNW 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++ DPDVIA+QEVRMPAAGSK APKNH ELKDDT +SREEK ILM ALS PPF
Sbjct: 59 PEFTKFVSDLDPDVIAVQEVRMPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPF 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSLADSKYAGTAL VKKCFQPKKVSFS+++ A K+EP+GRVILAEFE+F LLNT
Sbjct: 119 GNYRVWWSLADSKYAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNT 178
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y PNNGWK+EE SFQRRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AA
Sbjct: 179 YVPNNGWKDEETSFQRRRKWDKRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAA 238
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K NGYVPPNKED GQPGFT+AER+RFG ILKEG+L+DAYR LHKEKDM+ GFSWSGNPIG
Sbjct: 239 KHNGYVPPNKEDCGQPGFTLAERRRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIG 298
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 358
KYRGKRMRIDYFIV E LKDRI+ACE+ G GIEL+GFYGSDHCPVSLELSE SS S +
Sbjct: 299 KYRGKRMRIDYFIVPEALKDRIVACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQ 356
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/354 (77%), Positives = 312/354 (88%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 354
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 278/365 (76%), Positives = 318/365 (87%), Gaps = 3/365 (0%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K++G+ + EE ++K+P KFVTWNANS LLRVKN
Sbjct: 321 MKRFFKPIEKEGSTAAKKPCLSPEKREGDG-DGVEEEKNQKEPSKFVTWNANSFLLRVKN 379
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKN +EL DDTK REEK IL RALSSP
Sbjct: 380 DWSQFSKFVSDFDPDVIAVQEVRMPAAGGKGKPKNPEELSDDTKVLREEKQILTRALSSP 439
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY++WWSLADSKYAGTALLVKKCF+PKKV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 440 PFGNYRVWWSLADSKYAGTALLVKKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLL 499
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWKEEENSFQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 500 NTYSPNNGWKEEENSFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 559
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 298
AKLNGYVPPNKED GQPGFT +ER+RFG +KEG L+DAYR+LHKE+DM+ GFSWSGNP
Sbjct: 560 TAKLNGYVPPNKEDCGQPGFTPSERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNP 619
Query: 299 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 358
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGFYGSDHCPV+LELS+ SS++E+
Sbjct: 620 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFYGSDHCPVTLELSKPSSETEQ 679
Query: 359 REKKN 363
+ N
Sbjct: 680 NQVSN 684
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/354 (77%), Positives = 312/354 (88%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE S+KK ALSPS KDG+ ++ + KK+PLKFVTWNANSLLLRVKN+W
Sbjct: 1 MKRFFKPIEKEGSSKKVALSPSLKDGDDGDSEASVPDKKEPLKFVTWNANSLLLRVKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
EF+ F+T DPD IA+QEVR+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF
Sbjct: 61 SEFTKFVTNLDPDAIAIQEVRIPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
NY++WWSL+DSKYAGTAL +KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNT
Sbjct: 121 ANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNT 180
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNGWKEEE SF+RRRKWDKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AA
Sbjct: 181 YSPNNGWKEEEKSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAA 240
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
KLNGY+PPNKED GQPGFT+AER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIG
Sbjct: 241 KLNGYIPPNKEDCGQPGFTLAERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIG 300
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 354
KYRGKRMRIDYF+VSE L RI++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 301 KYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/365 (75%), Positives = 317/365 (86%), Gaps = 3/365 (0%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 323 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 381
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 382 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 441
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 442 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 501
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 502 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 561
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 298
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 562 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 621
Query: 299 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 358
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 622 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 681
Query: 359 REKKN 363
+ N
Sbjct: 682 NQVSN 686
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/365 (75%), Positives = 317/365 (86%), Gaps = 3/365 (0%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFKPIEKE S AKKP LSP K+DG+ + EE ++ +P KF+TWNANS LLRVKN
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDG-DGVEEEKNQNEPSKFMTWNANSFLLRVKN 59
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
+W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSP
Sbjct: 60 DWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSP 119
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LL
Sbjct: 120 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLL 179
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA
Sbjct: 180 NTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFA 239
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 298
AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNP
Sbjct: 240 TAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 299
Query: 299 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 358
IGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+
Sbjct: 300 IGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQ 359
Query: 359 REKKN 363
+ N
Sbjct: 360 NQVSN 364
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/356 (74%), Positives = 304/356 (85%), Gaps = 10/356 (2%)
Query: 1 MKRFFKPIEKEC--SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN 58
MKRFFK +EK+ S KKP E + E N KK+PLKF+TWNANS LLRVKN
Sbjct: 1 MKRFFKVVEKDSDGSVKKPR--------ENDSEAEESNEKKEPLKFMTWNANSFLLRVKN 52
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
NWP+F+N ITTFDPD+IA+QEVRMPAAG+K A K E+KDDT A+REEK IL RALS+P
Sbjct: 53 NWPDFTNLITTFDPDLIAIQEVRMPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAP 112
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
PF NY +WWSLADSKYAGTALLVKKCF+PK V F+L+K A K+EPDGRVIL EFET LL
Sbjct: 113 PFGNYHVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLL 172
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFA 238
NTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+
Sbjct: 173 NTYVPNNGWKEEANSFQRRRKWDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFS 232
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 298
AKLNGY+PPNKED GQPGFT++ERKRFG IL+EG+L+DAYRFLH++KDM+ GFSWSGNP
Sbjct: 233 VAKLNGYIPPNKEDCGQPGFTLSERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNP 292
Query: 299 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 354
+G+YRGKRMRIDYF+VSE+LK+RI ACEM+GHGIELEGFYGSDHCPV+LELS +S+
Sbjct: 293 VGRYRGKRMRIDYFLVSEKLKERIAACEMRGHGIELEGFYGSDHCPVTLELSPSSN 348
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/362 (74%), Positives = 305/362 (84%), Gaps = 10/362 (2%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 292
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+EG+L+DAYRFLHK+KDM+ GF
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILREGKLVDAYRFLHKDKDMEQGF 298
Query: 293 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 352
SWSGNPIG+YRGKRMRIDYFIVSE++K++I ACEM G GIEL+GFYGSDHCPV+LELS +
Sbjct: 299 SWSGNPIGRYRGKRMRIDYFIVSEKIKEKIAACEMHGKGIELQGFYGSDHCPVTLELSPS 358
Query: 353 SS 354
S+
Sbjct: 359 SN 360
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/370 (67%), Positives = 305/370 (82%), Gaps = 10/370 (2%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT +SR+EK +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSRDEKQVVL 119
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AEF
Sbjct: 120 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 179
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 180 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 292
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD GF
Sbjct: 239 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGF 298
Query: 293 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 352
SWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPV+LELS+A
Sbjct: 299 SWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELSKA 358
Query: 353 SSDSEKREKK 362
+++ + K
Sbjct: 359 VAEAAPEQPK 368
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/363 (69%), Positives = 299/363 (82%), Gaps = 8/363 (2%)
Query: 1 MKRFFKPIEKECSAKKPALSP-------SKKDGETTETSSEENSKKDPLKFVTWNANSLL 53
MKRFF+P+ KE S K S E ++P +F+TWNANSLL
Sbjct: 1 MKRFFQPVPKEGSPAKRRPSEVVASDCVDGPAATAAGAGGEGAPGQEPRRFMTWNANSLL 60
Query: 54 LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMR 113
LR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN ELKDDT +SREEK I++R
Sbjct: 61 LRMKSDWPAFCQFVSRLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSSSREEKQIVLR 120
Query: 114 ALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 173
ALSS PFK+Y++WWSL+DSKYAGTA+ VKK F+PKKVSF+L++T+ K+E DGRVI+ EFE
Sbjct: 121 ALSSSPFKDYRVWWSLSDSKYAGTAVFVKKMFEPKKVSFNLDRTSSKHESDGRVIIVEFE 180
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233
+ LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KP IWCGDLNVSHEEIDVSH
Sbjct: 181 SLLLLNTYAPNNGWKEEENSFQRRRKWDKRMFEFVQQVD-KPFIWCGDLNVSHEEIDVSH 239
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 293
P+FF++AKLNGY+PPNKED GQPGFT+AER+RFG IL +G+L+DAYR LHKEKDM+CGFS
Sbjct: 240 PDFFSSAKLNGYIPPNKEDCGQPGFTLAERQRFGNILSQGKLVDAYRHLHKEKDMECGFS 299
Query: 294 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 353
WSGNPIGKYRGKRMRIDYFIVSE LKDR+++CE+ GHGIELEGFYGSDHCPVSLELS+ +
Sbjct: 300 WSGNPIGKYRGKRMRIDYFIVSERLKDRLVSCEIHGHGIELEGFYGSDHCPVSLELSKDA 359
Query: 354 SDS 356
+++
Sbjct: 360 AEA 362
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 310/373 (83%), Gaps = 27/373 (7%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 218
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++ER+RFG IL +G+L+DA
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGNILSQGKLVDA 295
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDYF+VSE+LKD+I++C++ G GIELEGFY
Sbjct: 296 YRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIHGRGIELEGFY 355
Query: 339 GSDHCPVSLELSE 351
GSDHCPVSLELSE
Sbjct: 356 GSDHCPVSLELSE 368
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/364 (68%), Positives = 305/364 (83%), Gaps = 10/364 (2%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 231
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 232 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 291
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 292 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351
FSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDHCPVSLELSE
Sbjct: 300 FSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVSLELSE 359
Query: 352 ASSD 355
A ++
Sbjct: 360 AVAE 363
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/374 (66%), Positives = 305/374 (81%), Gaps = 20/374 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDV 231
FE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDV
Sbjct: 181 FESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDV 239
Query: 232 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 291
SHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL +G+L+DAYR LHKEKD+D G
Sbjct: 240 SHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGG 299
Query: 292 FSWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 341
FSWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSD
Sbjct: 300 FSWSGHPIGNEINFSAYASRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSD 359
Query: 342 HCPVSLELSEASSD 355
HCPVSLELSEA ++
Sbjct: 360 HCPVSLELSEAVAE 373
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/356 (69%), Positives = 276/356 (77%), Gaps = 33/356 (9%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFKPIEKE SAKKPAL+ +G+ E + K PLKF+TWNANSLLLR KN+W
Sbjct: 1 MKRFFKPIEKEGSAKKPALAQEDSEGKIGENGDNNTTNKQPLKFITWNANSLLLRAKNDW 60
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
PEF+ F++T DPDVIA+QEVRMPAAGSK APKN ELKDDT +SREEK ILMRALSSPPF
Sbjct: 61 PEFTKFVSTLDPDVIAIQEVRMPAAGSKGAPKNPGELKDDTSSSREEKQILMRALSSPPF 120
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+Y+IWWSLADSKYAGTALLVKK F KVSFSL+K+
Sbjct: 121 GSYKIWWSLADSKYAGTALLVKKRFHNIKVSFSLDKSG---------------------- 158
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
+SF R +K DKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AA
Sbjct: 159 ----------GDSF-REKKMDKRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAA 207
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K NGYVPPNKED GQPGFT+ ERKRFG+IL+EG+LIDAYRFLHKEKDM+ GFSWSGNPIG
Sbjct: 208 KQNGYVPPNKEDCGQPGFTLNERKRFGSILREGKLIDAYRFLHKEKDMERGFSWSGNPIG 267
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 356
KYRGKRMRIDYFIVSE+LK RII+CEM G GIEL+GFYGSDHCPVSLEL + DS
Sbjct: 268 KYRGKRMRIDYFIVSEKLKGRIISCEMHGQGIELQGFYGSDHCPVSLELVPTTCDS 323
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/380 (59%), Positives = 279/380 (73%), Gaps = 51/380 (13%)
Query: 1 MKRFFKPIEKECS--------AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSL 52
MKRFF+P+ K+ S A +P P+ G T E ++P KF+TWNANSL
Sbjct: 1 MKRFFQPVAKDGSPSKKRQAAAAEPEGGPASA-GAATGGDGEGRPAEEPRKFLTWNANSL 59
Query: 53 LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112
LLR+K++WP FS + DPDVI +Q +++
Sbjct: 60 LLRMKSDWPAFSQLVARLDPDVICVQ-------------------------------VVL 88
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AEF
Sbjct: 89 RALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVIIAEF 148
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
E+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEIDVS
Sbjct: 149 ESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEIDVS 207
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 292
HP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD GF
Sbjct: 208 HPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGF 267
Query: 293 SWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 342
SWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYGSDH
Sbjct: 268 SWSGHPIGNEINFSAYSSRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDH 327
Query: 343 CPVSLELSEASSDSEKREKK 362
CPV+LELS+A +++ + K
Sbjct: 328 CPVTLELSKAVAEAAPEQPK 347
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/352 (59%), Positives = 269/352 (76%), Gaps = 13/352 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 177
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 237
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
A A GY PPNKED GQPGFT+ ER RF AIL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSAILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/352 (59%), Positives = 268/352 (76%), Gaps = 13/352 (3%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFF+P+E++ ++KKP+++ + + EN+ DP +F++WNANSLLLR KNN
Sbjct: 1 MKRFFQPVERDGASKKPSIAIA---------NGGENACADPSRFMSWNANSLLLRFKNNR 51
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E +FI FDPDVI +QEVR+PAAG K KN E+KDD+ A+R +K +MR LS P
Sbjct: 52 EEVMSFIRGFDPDVICIQEVRLPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPM 111
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYL 177
+Y +WWSL ++KYAGTAL VK CF+P V+F+++ K A ++E DGR+ILAEF +F L
Sbjct: 112 ADYSVWWSLGENKYAGTALFVKNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTL 171
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFF 237
LNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFF
Sbjct: 172 LNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFF 230
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
A A GY PPNKED GQPGFT+ ER RF IL G L+D YR LH+++D++ GF+WSGN
Sbjct: 231 ANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGNLVDTYRHLHEKQDLEAGFTWSGN 290
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
P+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 291 PVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 244/273 (89%), Gaps = 5/273 (1%)
Query: 88 KDAPKNHQ----ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
+ PK HQ ELKDDT +SREEK I++RALSS PFK+Y++WWSL+DSKYAGTA+ +KK
Sbjct: 28 QQVPKGHQKNPSELKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKK 87
Query: 144 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 203
F+PKKVSF+L++T+ K++ DGRVI+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR
Sbjct: 88 KFEPKKVSFNLDRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKR 147
Query: 204 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
+ EFV Q KPLIWCGDLNVSH EIDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER
Sbjct: 148 MLEFVQQVD-KPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAER 206
Query: 264 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 323
+RFG IL +G+L+DAYR+LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYF+VSE LKDRI+
Sbjct: 207 QRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIV 266
Query: 324 ACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 356
+CEM GHGIELEGFYGSDHCPVSLELS+ ++++
Sbjct: 267 SCEMHGHGIELEGFYGSDHCPVSLELSKEAAEA 299
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/360 (57%), Positives = 268/360 (74%), Gaps = 3/360 (0%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW 60
MKRFFK I +E S K+ L+ S+ + T + E++ K++P KF++WN NS LLR+K N
Sbjct: 1 MKRFFKSIGREGSFKR--LATSRGEDGTPTCAREDSEKREPTKFMSWNTNSFLLRLKTNR 58
Query: 61 PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120
E + + DPDVIA+QEVR+P+AG K P+NH ELKDDT ++RE+K I+MRALS P
Sbjct: 59 EEVLSLLRRLDPDVIAIQEVRIPSAGRKGEPRNHGELKDDTNSAREDKQIMMRALSVSPL 118
Query: 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+Y +WWSL+DSKY GTALLVK P + +SL+ LK+E DGRVILAEF +F LLNT
Sbjct: 119 SDYGVWWSLSDSKYGGTALLVKHSCSPISILYSLDD-KLKHEADGRVILAEFHSFRLLNT 177
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y PNN WK+++N F RRR WD R+ EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ A
Sbjct: 178 YVPNNSWKDDDNGFARRRAWDARMIEFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNA 237
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
KL GY PPN ED GQPGFT+ ER+RF L +G L+D YR LHK++D D GF+WSGNP+G
Sbjct: 238 KLQGYTPPNAEDIGQPGFTLGERQRFAECLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVG 297
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 360
KYRGKRMRIDYF++S +L DR+++ ++ G GIE EGF GSDHCP+++E+ A+ + K E
Sbjct: 298 KYRGKRMRIDYFLLSRKLLDRLVSSDIHGQGIEQEGFCGSDHCPITMEIRTATKEIAKVE 357
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/280 (72%), Positives = 228/280 (81%), Gaps = 10/280 (3%)
Query: 1 MKRFFKPIEKE---CSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK 57
MKRFFK IEK+ CS K ++ + + + EE +KK+PLKF+TWNANSLLLRVK
Sbjct: 1 MKRFFKVIEKDSEKCSKKPKENENEEEKKQ--DENEEEATKKEPLKFMTWNANSLLLRVK 58
Query: 58 NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA-----PKNHQELKDDTKASREEKLILM 112
NNW EFSNFITTFDPDVIA+QEVRMPAA S + PKN E+KDDT A+REEK ILM
Sbjct: 59 NNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAEVKDDTNAAREEKRILM 118
Query: 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 172
RALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V F+L+K A K+EPDGRVIL EF
Sbjct: 119 RALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILVEF 178
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVS 232
ET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q S KPLIWCGDLNVSHEEIDVS
Sbjct: 179 ETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVS 238
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL+E
Sbjct: 239 QPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILRE 278
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 216/286 (75%), Gaps = 14/286 (4%)
Query: 1 MKRFFKPIEKECSAKK---------PALSPSKKDGETTETSSEE--NSKKDPLKFVTWNA 49
MKR+F+P+EK+ S KK SP +G T +EE KK+PLKF++WNA
Sbjct: 1 MKRYFQPVEKDGSFKKHKEQLTANPSHSSPPTSNGTTVPPQAEEADGVKKEPLKFMSWNA 60
Query: 50 NSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109
NSLLLR+K N E ++F+ DPDVIA+QEVR+PAAG K KN ELKDDT ++REEK
Sbjct: 61 NSLLLRLKKNRTELADFVQRLDPDVIAIQEVRIPAAGGKGGSKNQGELKDDTSSAREEKQ 120
Query: 110 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGR 166
LMRA+S PP NY++WWSL D+KYAGTAL VK QP KV+FSL++ +ALK+E DGR
Sbjct: 121 TLMRAISCPPLSNYRVWWSLGDTKYAGTALFVKHQCQPLKVTFSLDQIGSSALKHEVDGR 180
Query: 167 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSH 226
VI+AEFE F LLN+Y PNNGWK++E F+RRRKWD+R+ +FVL S KPLIWCGDLNVSH
Sbjct: 181 VIVAEFEGFRLLNSYVPNNGWKDDETGFRRRRKWDQRMLDFVLGVSDKPLIWCGDLNVSH 240
Query: 227 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
++IDVSHPEFF+ AK+ GY+PPNKED GQPGFTIAER+RF IL +
Sbjct: 241 QDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGFTIAERRRFSTILSQ 286
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/273 (63%), Positives = 215/273 (78%), Gaps = 27/273 (9%)
Query: 1 MKRFFKPIEKECSA--KKPALSPSKK--------------------DGETTETSSEENSK 38
MKRFF+P+ K+ S K+PA + + +G++ EE
Sbjct: 1 MKRFFQPVPKDGSPAKKRPAAAAAASASDSDSLGGDAPAAAACAVGEGDSPPAPREE--- 57
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+P +FVTWNANSLLLR+K++WP F F++ DPDVI +QEVRMPAAGSK APKN +LK
Sbjct: 58 -EPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPKNPGQLK 116
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
DDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++KK F+PKKVSF+L++T+
Sbjct: 117 DDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMIIKKKFEPKKVSFNLDRTS 176
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIW 218
K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIW
Sbjct: 177 SKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVD-KPLIW 235
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
CGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 236 CGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 95/100 (95%)
Query: 252 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 311
D GQPGFT++ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDY
Sbjct: 360 DCGQPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDY 419
Query: 312 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351
F+VSE+LKD+I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 420 FLVSEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELSE 459
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 206 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 266 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
FG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++C
Sbjct: 62 FGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSC 121
Query: 326 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 362
EM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 122 EMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 158
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 208/404 (51%), Gaps = 57/404 (14%)
Query: 1 MKRFFKPIEKECS--AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLL--LRV 56
MKRFF+P + S AK P+ G T + + + + DP FVTWNANSLL LR
Sbjct: 1 MKRFFQPAVPDPSKRAKGSGDDPTGLGG-TAKGLGDNDKRSDPRSFVTWNANSLLGRLRK 59
Query: 57 KNNWPEFSNFITTFD-PDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115
+ + ++ D PDVI +QE +PAA AP LKDDTKA+RE+ ++ L
Sbjct: 60 QPDKDALFEYLREKDLPDVICVQETWLPAA----APNRRGTLKDDTKAAREDAALIHLCL 115
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT----ALKYEPDGRVILAE 171
P Y+ +WS AD K AG A+LVKK V SL + +GRV+L E
Sbjct: 116 RQKPLSAYRPYWSCADVKRAGCAVLVKKDVDVVSVRRSLTASNGANGDVAHDEGRVLLLE 175
Query: 172 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------------------ 213
F +F LLNTYA NNGW +E SF +RR+WD + F+ +
Sbjct: 176 FRSFVLLNTYAQNNGWTQE--SFAKRRRWDAEVHAFIAGNTAGATPRPRFDDSDLNATSR 233
Query: 214 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY-------VPPNKEDWGQPGFTIAERK 264
KPL+W GDLNV H+EIDV+HP FFA K G P + D GQPGFT ER
Sbjct: 234 RFKPLMWTGDLNVCHKEIDVTHPRFFATQKPEGRKGKPPPETPTDPGDCGQPGFTRNERT 293
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----IGKYRGKRMRIDYFIVSEELKD 320
RF ++ L+DAYR + D+ +W G+P +GKYRG MR+DYF V EL +
Sbjct: 294 RFERLVTAHALVDAYR--RQRGDVKDAMTWMGHPGVVAVGKYRGMGMRLDYFFVETELAN 351
Query: 321 RIIACEMQGHGIEL--------EGFYGSDHCPVSLELSEASSDS 356
R+ CE G+ L F+GSDHC V L L + D
Sbjct: 352 RVEVCEQATDGMGLAAMAERPASAFFGSDHCAVYLRLKDVPLDG 395
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 192/350 (54%), Gaps = 43/350 (12%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------- 86
N K D VTWN NS+ +R KN W EF NF + DV+ QEVR+PA
Sbjct: 272 NIKNDVKIIVTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDN 331
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
D ++ ++K+ + S + I+ + L+ FK+Y ++SLA+ KY+G +L
Sbjct: 332 KNKNKNKNDGIRDRGKIKNSDQKSLADYEIMEQILNDD-FKDYNAYFSLANIKYSGQLVL 390
Query: 141 VKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
VKK + + ++L E A + +GRVIL EF F+LL+TY PNNG+ + F+RRR
Sbjct: 391 VKKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRR 448
Query: 199 KWDKRIQEFVLQCSG---KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
+D+++Q+FV KPL+W GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 449 LFDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQ 505
Query: 256 PGFTIAERKRFGAILKEGRLIDAYRFL--------------HKEKDMDCGFSWSGNP--I 299
PG T ERK F IL G L+D+YR+L H D ++W P +
Sbjct: 506 PGCTDFERKNFQKILTAGNLVDSYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLL 564
Query: 300 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
GK K MRID+FIVS+E +RI +QG + FYGSDHCPV L L
Sbjct: 565 GKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVILYL 614
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 203/375 (54%), Gaps = 47/375 (12%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 227
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 228 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 284
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHP 465
Query: 285 EKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
+ +SW G RG MR+D+ +++E L + + G G
Sbjct: 466 RTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKAN 525
Query: 337 FYGSDHCPVSLELSE 351
F+GSDHCPV + E
Sbjct: 526 FFGSDHCPVLVRFKE 540
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 201/369 (54%), Gaps = 47/369 (12%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 171 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 230
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 231 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 289
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 290 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 349
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHE 227
Y+PNNG + SF+RRR WD+R+ +FV QCS KPL+W GDLN + E
Sbjct: 350 YSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPE 407
Query: 228 EIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 284
+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH
Sbjct: 408 DIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHP 465
Query: 285 EKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
+ +SW G RG MR+D+ +++E L + + G G
Sbjct: 466 RTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKAN 525
Query: 337 FYGSDHCPV 345
F+GSDHCPV
Sbjct: 526 FFGSDHCPV 534
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 201/362 (55%), Gaps = 35/362 (9%)
Query: 19 LSPSKKDGETTETS-------SEENSKKDPLKFVTWNANSLLLRVKNN--WPEFSNFITT 69
L+PS++ ET E +E +K PL VTWN NS+ R++++ W FS F+
Sbjct: 68 LNPSRETRETEEDGEGELERRTEGPKRKAPLSIVTWNVNSIAARIRDSRQWFYFSRFLQK 127
Query: 70 FDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRALSSPPFKNY 123
DPD++ LQEV++ A G A P++H +KD K S E L AL + N+
Sbjct: 128 IDPDILCLQEVKLAAHGPPGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNH 186
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT---ALKYEPDGRVILAEFETFYLLNT 180
+ SLAD +Y+G + ++K Q + ++L A +++ +GRVILAEFE F +L T
Sbjct: 187 SLLISLADWRYSGQMMFIRKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTT 246
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
Y+PNNG + SF+RRR WD+R+ +FV Q KPL+W GDLN + E+ID+S P+ F +
Sbjct: 247 YSPNNGATPK--SFERRRLWDERMLQFVTQLK-KPLVWVGDLNCAPEDIDLSDPDQFRSV 303
Query: 241 ---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD----MDCGFS 293
+G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH + +S
Sbjct: 304 IHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYS 361
Query: 294 WSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
W G RG MR+D+ +++E L + + G G F+GSDHCPV +
Sbjct: 362 WRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPVLVRF 421
Query: 350 SE 351
E
Sbjct: 422 KE 423
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 191/350 (54%), Gaps = 53/350 (15%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
VTWN NS+ +R KN W +F F+ + DV+ QEVR+PA + PKN + +D
Sbjct: 8 IVTWNMNSITVRYKNKDKWKKFIKFVNEINADVLCFQEVRLPAL---NIPKNEEVKVEDN 64
Query: 102 KA---SREEKLI---------------------LMRALSSPPFKNYQIWWSLADSKYAGT 137
K + EK+I ++ + FK Y ++SLA+ KY+G
Sbjct: 65 KTYGRKKTEKIIDEERDRGSVKNTDQKSLLDYNIVEDILKKDFKEYNAYFSLANIKYSGQ 124
Query: 138 ALLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
+LVKK + K V ++L + + +GR+IL EF FYLL+TY+PNNG+ + F+
Sbjct: 125 LVLVKKTIEVKSVRYNLSFDTNPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DAPKFE 182
Query: 196 RRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
RRR +D ++EFVL + K LIW GDLN++ E+ID+SHP F K G VP KE
Sbjct: 183 RRRLFDDSMKEFVLFMKKENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYI 239
Query: 254 GQPGFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--I 299
GQPG T AERK F ILK G L+D+YR+ K D ++W P I
Sbjct: 240 GQPGCTDAERKNFKTILKNGDLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLI 298
Query: 300 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
GK + MRID+FIVS+ L D+I E+ G+ + FYGSDHCPV L +
Sbjct: 299 GKSCNRAMRIDHFIVSKSLLDKIENVEIHGYSVSHTNFYGSDHCPVILNM 348
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 194/350 (55%), Gaps = 48/350 (13%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAA-----GSKDAPKN--H 94
VTWN NS+ +R KN W F F+ + DV+ QEVR+PA G K+ KN
Sbjct: 211 IVTWNMNSITVRYKNREKWKRFIKFVNEINADVLCFQEVRLPALNVPKNGVKNGVKNGVK 270
Query: 95 QELKDDTKASREEK---LI------------LMRALSSPPFKNYQIWWSLADSKYAGTAL 139
+K++ K EE+ L+ ++ + FK Y ++SLA+ KY+G +
Sbjct: 271 NGVKNEVKNEDEERERGLVKNTDQKSMIDYKIVEDILKNDFKEYNSYFSLANIKYSGQLV 330
Query: 140 LVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F RR
Sbjct: 331 LVKKDIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRR 388
Query: 198 RKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
+ +D++++ FVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQ
Sbjct: 389 KLYDEQMKNFVLFMKNENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQ 445
Query: 256 PGFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--IGK 301
PG T AER+ F ILK G L+D+YR+ K D ++W P IGK
Sbjct: 446 PGCTDAERENFKTILKNGNLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGK 504
Query: 302 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351
+ MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L + E
Sbjct: 505 SCNRAMRIDHFIVSKNLLNQIENVEIHGYSVSHTNFYGSDHCPVILNMKE 554
>gi|195620344|gb|ACG32002.1| hypothetical protein [Zea mays]
Length = 207
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 146/198 (73%), Gaps = 10/198 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAE 171
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+AE
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHEADGRVIIAE 180
Query: 172 FETFYLLNTYAPNNGWKE 189
FE+F L + + W E
Sbjct: 181 FESF-LFTEHLFSKQWME 197
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 193/349 (55%), Gaps = 43/349 (12%)
Query: 38 KKDPLKFVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN- 93
+K+ VTWN NS+ +R KN W F F+ + DV+ QEVR+PA SK+ KN
Sbjct: 2 RKNVNVIVTWNMNSITVRYKNKEKWKRFMKFVNEINADVLCFQEVRLPALNISKNESKNV 61
Query: 94 ------------HQELKDDTKASREEKLI---LMRALSSPPFKNYQIWWSLADSKYAGTA 138
+ + K + ++ LI ++ + FK Y ++SLA+ KY+G
Sbjct: 62 NNKVYGGKKNEGEERNRGSVKNTDQKSLIDYKIVEEILKNDFKEYNGYFSLANIKYSGQL 121
Query: 139 LLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR 196
+LVKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F+R
Sbjct: 122 VLVKKSIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQTKFKR 179
Query: 197 RRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
R +D +++EFVL + K LIW GDLN++ E++D+SHP F K G VP KE G
Sbjct: 180 RSLFDNQMKEFVLFMKNENKNLIWTGDLNIAPEDVDLSHPIEFRKMK-KGNVP--KEYIG 236
Query: 255 QPGFTIAERKRFGAILKEGRLIDAYRFL------------HKEKDMDCGFSWSGNP--IG 300
QPG T AER F ILK G LID+YR+ K D ++W P IG
Sbjct: 237 QPGCTDAERANFKTILKNGDLIDSYRYFENYKIKNDPTYKRKTNINDNIYTWRC-PFLIG 295
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
K + MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L +
Sbjct: 296 KSCNRAMRIDHFIVSKNLLNQIENIEIHGYSVFHTNFYGSDHCPVILNM 344
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 187/351 (53%), Gaps = 51/351 (14%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ----- 95
P VT+N N R+ NW E F+ PD++ QEVR+PA G A K
Sbjct: 68 PRTIVTFNLNGASPRLAKNWNEIKGFLEEHKPDLVCFQEVRLPAKGVPKAKKEDDTGRKR 127
Query: 96 -ELKDDTKASREEKLILMRALSSPPFK-NYQIWWSLADSKYAGTALLVKK-----CFQPK 148
+LKDDT A R++ ++ R L + + Y++ SLA+SKYAGTA L+ P
Sbjct: 128 WQLKDDTAADRKDIALVDRTLRALARRLGYRLVMSLANSKYAGTAALISTWGAVFAITPV 187
Query: 149 KVSFS-------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
++F+ L K +++ +GRVI E+ + +L Y PNNG K E SFQ
Sbjct: 188 TIAFAGRLGLSALDLPEPLGKLFKEHDREGRVIAIEYPSVTVLALYVPNNGSKAE--SFQ 245
Query: 196 RRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP-NKEDWG 254
RRR+WD + FV + SGK LI GDLNV+HE+ D++H FF G P N ED G
Sbjct: 246 RRRRWDDELCGFVDKYSGK-LIITGDLNVAHEDADLTHASFF-----KGMFPAANPEDSG 299
Query: 255 QPGFTIAERKRFGAILKEGR-LIDAYRFLH---------KEKDMDCGFSWSGNP------ 298
QPG T AE++R +L G L+DAYR L+ +M+ G +W G
Sbjct: 300 QPGCTPAEKRRHSRLLASGGGLVDAYRRLNPVPAAGAGGARTEME-GMTWRGTAGNQVAA 358
Query: 299 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+G+Y GK MRIDYF++S L RI ++ G G + +GF GSDHCP+ L L
Sbjct: 359 MGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 409
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 197/375 (52%), Gaps = 48/375 (12%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPD 73
KP + + + E +++ VTWN NS+ +R KN W F +F + D
Sbjct: 3 KPQIGTATLKTNQSTQQGETKKEEEVKTIVTWNMNSITVRYKNKEKWNAFMSFFNRINAD 62
Query: 74 VIALQEVRMPAA------GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW 127
V+ QEVR+PA +KD ++ +K+ + S+ + +M + F NY ++
Sbjct: 63 VLCFQEVRLPAMNLDNVKNAKDGKRDRGRVKNTDQKSQVD-FEIMEQILKKDFHNYNAYF 121
Query: 128 SLADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNN 185
SLA+ KY+G +L+K+ K + ++L A ++ +GRVI+AEF F+LL+TY PNN
Sbjct: 122 SLANIKYSGQLVLIKRSIPVKSIRYNLSFDADPSEHHEEGRVIVAEFSNFFLLSTYTPNN 181
Query: 186 GWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G+ + F+RRR +D++++EF VL+ K LIW GDLN++ E+ID+SHP F K
Sbjct: 182 GF--DLIKFERRRLFDEQLKEFVSVLKNKKKNLIWTGDLNIAPEDIDLSHPAEFRRMK-K 238
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----- 298
G VP KE GQPG T ERK F IL G LID+YR L K + + G + G P
Sbjct: 239 GNVP--KEFVGQPGCTDFERKNFRGILSAGDLIDSYRHLAKLRG-NKGGAVKGEPAKGEP 295
Query: 299 ------------------------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
+GK K MRID+FIVS + + + ++ G+ +
Sbjct: 296 LKVTPGKVTGDINDNIYTWRCPFLMGKSCNKAMRIDHFIVSRDFMPNVESVDIHGYSVFH 355
Query: 335 EGFYGSDHCPVSLEL 349
FYGSDHCPV L L
Sbjct: 356 NNFYGSDHCPVILRL 370
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 185/337 (54%), Gaps = 38/337 (11%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA +KD ++
Sbjct: 184 IVTWNMNSITVRYKNKEKWNAFMSFFNRINADVLCFQEVRLPALNLYDAKEAKDGERDRG 243
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL- 154
++K+ + S+ + +M + F NY ++SLA+ KY+G +LVK+ K + ++L
Sbjct: 244 KVKNTDQKSQVD-FDIMEKILKEDFHNYNAYFSLANIKYSGQLVLVKRSIPIKSIRYNLS 302
Query: 155 -EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
+ ++ +GRVI+ EF FYLL+TY PNNG+ E F+RRR +D++++EFV L+
Sbjct: 303 FDLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFDEKLKEFVSVLRN 360
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 361 KKKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILS 417
Query: 272 EGRLIDAYRFL--------------HKEKDMDCG---FSWSGNP--IGKYRGKRMRIDYF 312
G LID+YR L H D ++W P +GK K MRID+F
Sbjct: 418 AGDLIDSYRHLANLRANKGEPGKATHNRAVSDINDNIYTWRC-PFLMGKSCNKAMRIDHF 476
Query: 313 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
IVS + + E+ G+ + FYGSDHCPV L L
Sbjct: 477 IVSRDFMPNVENVEIHGYSVFHNNFYGSDHCPVILHL 513
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 191/352 (54%), Gaps = 52/352 (14%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 156 KTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 272 EGRLIDAYRFL-------------------HKEKDMDC-GFSWSGNP------------- 298
G L+D+YR L K C G + +G P
Sbjct: 402 AGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGAATNGAPDINDNIYTWRCPF 461
Query: 299 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 462 LMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 513
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 191/357 (53%), Gaps = 57/357 (15%)
Query: 44 FVTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQ 95
VTWN NS+ +R KN W F +F + DV+ QEVR+PA SK+ ++
Sbjct: 168 IVTWNMNSITVRYKNKDKWNAFMSFFNRINADVLCFQEVRLPALNLCAVKNSKEGKRDRG 227
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+ K + ++L
Sbjct: 228 KVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIPVKSIRYNLR 286
Query: 156 KTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 211
A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+
Sbjct: 287 LDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRN 344
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 345 MGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILS 401
Query: 272 EGRLIDAYRFL-------------------HKEKDMDC------GFSWSGNP-------- 298
G L+D+YR L K C G + +G P
Sbjct: 402 AGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGGSCNGAATNGAPDINDNIYT 461
Query: 299 ------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 462 WRCPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 518
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 174/291 (59%), Gaps = 34/291 (11%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKN--NWPEFSNFITTFDPDVIALQEVRMPAA---G 86
+S +S + P F++WNANSL+ R K N F + + +PDVIALQEVRM A+ G
Sbjct: 31 TSSASSGRLPRSFLSWNANSLVNRCKEEENMRGFCDLVLKLEPDVIALQEVRMVASAPPG 90
Query: 87 SKDA---PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 143
SK ++ +D+ K +EE ++ AL P NY + WSLAD +YAGTAL+++K
Sbjct: 91 SKRGDGRKRDRGSPRDNEKECKEELELVASALRKEPLSNYVVRWSLADWRYAGTALMIRK 150
Query: 144 CFQPKKVSFSLE-KTALKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRR 197
+ K VSF +++ +GRV +A+F + ++NTYAPNNGWKEE N F +R
Sbjct: 151 GIR-KPVSFHYNLDLGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKR 208
Query: 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 255
R+WD R+ FV C G + W GD+NV+H++ DV+HP+FF + D GQ
Sbjct: 209 REWDTRLLSFVRTCRERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQ 256
Query: 256 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
PGFT E++RF +L+EG L+DA+R LH ++ F+ S +P +RG+R
Sbjct: 257 PGFTANEQERFSQVLEEGSLVDAFRLLHSPEE----FTSSDDPAWTWRGQR 303
>gi|194699264|gb|ACF83716.1| unknown [Zea mays]
gi|413917520|gb|AFW57452.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 166
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 125/166 (75%), Gaps = 9/166 (5%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKK--DGETTETSS-------EENSKKDPLKFVTWNANS 51
MKRFF+P+ K+ S K L+ + + DG T+ ++ E ++P KF+TWNANS
Sbjct: 1 MKRFFQPVPKDGSPSKKRLAGAAEPGDGPTSAGAATGAGGDVEGRPTEEPFKFLTWNANS 60
Query: 52 LLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111
LLLR+K++WP FS + DPDVI +QEVRMPAAGSK APKN ELKDDT SR+EK ++
Sbjct: 61 LLLRMKSDWPAFSQLVARLDPDVICVQEVRMPAAGSKGAPKNPSELKDDTSLSRDEKQVV 120
Query: 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T
Sbjct: 121 LRALSASPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRT 166
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 203/378 (53%), Gaps = 43/378 (11%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKN-- 58
+ FFK +E + K P ++ + ET ++ + WNA+SLL R+KN
Sbjct: 7 LTDFFKKVENPKATKIPKVTVVSRVPET-------------IRLMAWNADSLLNRIKNKE 53
Query: 59 NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
E + + D +V+ + EVRM A S + + + A R+ L++
Sbjct: 54 TAKEIAKVVKDHDVNVLCVCEVRM-ACESCSSTGAIDRVNSNQGAERD--LVVNFLTRQC 110
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK----YEPDGRVILAEF-- 172
F Q+++SL + K AG + ++K +P +V F + T + + P+GR+ILA+F
Sbjct: 111 GFD--QLYFSLRNIKQAGVGMFMRKMPKPDRVHFKIPGTEVGGDGFHHPEGRIILADFAS 168
Query: 173 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEID 230
E LL TY PNNGW E+ SF +RR++D ++ F+ + G+ +IW GDLNV+ D
Sbjct: 169 ENLQLLLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERIIWLGDLNVAASWND 226
Query: 231 VS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 289
V +P +F K + + +D GQPGFT AE+ RF +L+ G LID+YR H E+D +
Sbjct: 227 VGPNPAWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLEAGGLIDSYRQCHHEEDWE 284
Query: 290 CGFSWSGNP--------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 341
+W G P G++ GK MRIDY +V E +KD I++ E G G E +GF GSD
Sbjct: 285 KDATWRGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMKDDILSVENLGIGKERKGFMGSD 344
Query: 342 HCPV--SLELSEASSDSE 357
H P+ ++++S+ + SE
Sbjct: 345 HAPLLAAIKVSQPAVLSE 362
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 181/359 (50%), Gaps = 73/359 (20%)
Query: 12 CSAKKPALSPSKKDGETTETSS--------EENSKKDPLKFVTWNANSLLLRVKNN--WP 61
CS P+ P K+G+ + + +E + PL VTWN NS+ R+++ W
Sbjct: 61 CSEASPSDGPQAKEGQQRKNAEAEREREKRQEQKRTAPLSIVTWNVNSIASRIRDTRQWF 120
Query: 62 EFSNFITTFDPDVIALQEVRMPAAGSKDA------PKNHQELKDDTKASREEKLILMRAL 115
FS+F+ +PD++ LQEV++ A G A P++ +K+ K S E + AL
Sbjct: 121 YFSSFLQKVNPDILCLQEVKLAAHGPPGAKRGDGMPRDRSRIKESDKVSSVEAREIREAL 180
Query: 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 175
++ ++++ SLAD +Y+G + ++ P+GR+ILAEF F
Sbjct: 181 NTL-LPDHKLLISLADWRYSGQMMFIRNDL-----------------PEGRIILAEFSPF 222
Query: 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPE 235
+L TY+PNNG + SF+RRR WD+R+ EFV Q KPL+W GDLN + E+ID+S PE
Sbjct: 223 CVLTTYSPNNGGTPK--SFERRRLWDERMLEFVTQLK-KPLVWVGDLNCAPEDIDLSDPE 279
Query: 236 FFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 292
F + +G + P+ + GQ G T AER+RF AIL+ G D L DC F
Sbjct: 280 QFRSVIHESADGTIDPD--NIGQAGCTDAERRRFRAILERG--WDQCMCLK-----DC-F 329
Query: 293 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351
SG P G RG MR+D+ + F+GSDHCPV + E
Sbjct: 330 GGSG-PRGMLRGLGMRLDH----------------------IANFFGSDHCPVLVRFKE 365
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 142/304 (46%), Gaps = 75/304 (24%)
Query: 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEFETFY 176
P Y+ W+ AD + AG +LVKK K S SL + A P+GRV+ EFE
Sbjct: 5 PMSRYEPHWACADKRSAGCGVLVKKHIPVKSASRSLTRRAGEASQHPEGRVLFLEFENVT 64
Query: 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----------------CSG------- 213
LLN YA NNGWK E S +RR+WD ++ F+ C+
Sbjct: 65 LLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDDDAQLCAASKDATTS 122
Query: 214 -------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY--- 245
KP++W GDLN H E DV+HPEFFA K G
Sbjct: 123 NDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHPEFFALQKPEGKKGA 182
Query: 246 ----VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP--- 298
PP+ +D GQPGFT ER+RF I+ +L+D YR LH + C +W G+P
Sbjct: 183 PPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHLHGDARRAC--TWYGHPGVV 240
Query: 299 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG-----IELE-----GFYGSDHCPVSL 347
G+Y+G+ MR+DYF VS+ L+ + C LE F+GSDHC V L
Sbjct: 241 ATGRYKGRGMRLDYFFVSDGLERAAVECAQATDAYSDKPAALEQRPDDAFFGSDHCGVYL 300
Query: 348 ELSE 351
+L +
Sbjct: 301 KLKD 304
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 187/367 (50%), Gaps = 55/367 (14%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPA---AGSKD---AP 91
+ DP + WN +L R N E +F+ DV+ L EV++ A G+K AP
Sbjct: 24 RGDPRTIICWNVENLKSRATQNRREVRDFLGACGADVVFLSEVKLAAHCDKGAKKGDGAP 83
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK-CFQPKKV 150
+N + + D ++K+ L PF +SLAD +YAGT L++ P++V
Sbjct: 84 RNRRRVNDKF---HDDKVQCAALLDVGPFA--APIYSLADWRYAGTCCLLRSDGPAPRRV 138
Query: 151 SFSLEKT-----------ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199
SFSLE A ++PDGRVI+ E+ET +L+TY+PNNG + SF+RRR
Sbjct: 139 SFSLEPPDAPPARNSVAFADDHDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERRRL 196
Query: 200 WDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK------- 250
W+ +++ F ++ G+ L++ GDLN + + D+SHP +F A N P K
Sbjct: 197 WEAKVRAFAEAVRVRGRSLVYVGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKDRE 253
Query: 251 ----EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG-----FSWSGNP--- 298
+D GQPG T E + F A+L+ G L DA+R FSW G P
Sbjct: 254 RLEADDEGQPGCTPRESRYFDALLRAGGLFDAFRDARGAGAGAATIEGPHFSWRGPPGRD 313
Query: 299 ----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 354
G+Y GK MRID+ +VS + + +C++ G G+ +GF GSDHCP+ L L +++
Sbjct: 314 GLPETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVLRGSAA 371
Query: 355 DSEKREK 361
E+
Sbjct: 372 PGADDER 378
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 172/350 (49%), Gaps = 49/350 (14%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNN----------WPEFSNFITTFDPDVIALQ 78
TE + E++ +PL F +WNAN LL R+++ S + PDVIALQ
Sbjct: 2 TEAFTVEDAS-EPLSFASWNANGLLNRIRDKSDPNGRRTRALLALSENVMRKRPDVIALQ 60
Query: 79 EV--RMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAG 136
EV + G +H ++ + K R+EK + + PFKNY ++ LA+++ AG
Sbjct: 61 EVWLKCEEMGKGTGKWDHAKMGAEDKKLRDEKAFIEALMGRRPFKNYDAYYCLANARRAG 120
Query: 137 TALLVKKCF-QPKKVSFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWKE 189
+VKKC +P +V+ +L PD GRV++ E+E +LNTY P+NG
Sbjct: 121 VITMVKKCLAKPIRVARTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSNA 180
Query: 190 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVP 247
E +++R WD R+Q F+ GK ++W GDLNV+H++ DV P F
Sbjct: 181 ER--YEKRALWDFRVQRFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE--------- 229
Query: 248 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 307
G GFT+ ER+RF IL ++D YR + ++ S G + ++G M
Sbjct: 230 ------GVGGFTLPERRRFTDILAATDMVDTYRAFNGDRLTYTWRSTRGQGLDGWQG--M 281
Query: 308 RIDYFIVSEELKDRIIACEMQ--------GHGIELEGFYGSDHCPVSLEL 349
R+DYF+V +L RI +CE + + F SDHC + L L
Sbjct: 282 RLDYFVVPRKLVARIKSCETSTDRFDDTTAQSMPMSCFMDSDHCMIHLSL 331
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 185/409 (45%), Gaps = 87/409 (21%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN-------WP 61
EK S A + + G T E + E PL F WNA+ L ++K +
Sbjct: 33 EKTRSIDHGARAMDRAPGTTVEDAVE------PLSFFCWNADGLTRKLKRDDGRPSRAAM 86
Query: 62 EFSNFITTFDPDVIALQEV--------------------------RMPAAGSK------- 88
I PDVIALQEV R G +
Sbjct: 87 ALREAIAKRAPDVIALQEVWLKAAGGGKEGAGTRCGRDEWRTRDERASDDGKRGRLTTTR 146
Query: 89 -DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-Q 146
++H ++ D+ K E+K ++ + L PF+ Y + LA +K GT +LVKK +
Sbjct: 147 VTMGRDHTKMSDEGKVYAEDKAVMEKMLGGYPFREYDAHFCLAGAKRYGTCVLVKKALKK 206
Query: 147 PKKVSFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
P +V+ +L PD GRV+L E+E +LNTY P+NG E +++R W
Sbjct: 207 PIRVARTLALDGTDASPDDIDTNEGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMW 264
Query: 201 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGF 258
D R++ F+ G K +IW GDLN +H ++DV+ PE F G GF
Sbjct: 265 DFRVKRFLTHYKGKKDVIWLGDLNCAHRDLDVAPSPEQFI---------------GVGGF 309
Query: 259 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 318
T+ ER+RF IL ++DAYR LH ++ F+W G IG G MR+DYFIV
Sbjct: 310 TVPERQRFTDILSTSDMVDAYRALHGDRQT---FTWRG--IGMGSGLAMRLDYFIVPRTF 364
Query: 319 KDRIIACEMQGHGIE--------LEGFYGSDHCPVSLELSEA-SSDSEK 358
R+ +CE + + F+GSDHC + L L + +SD+EK
Sbjct: 365 VHRLKSCETSTDRFDDAVARERPISCFFGSDHCALYLTLHKRDASDAEK 413
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 155/310 (50%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F D D+ +QE ++
Sbjct: 1 MKIVSWNVNGIRACVKKG---FMDFFKDVDADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L +NY +W+ A+ K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEGQIQL-------DLENYHQYWNYAERKGYSGTAVFTKQ--EPLSVSYGIGED--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYLLN Y PN+ K + + + R W++R++ ++ + KP+I+C
Sbjct: 85 DEPEGRCITLEFEDFYLLNVYTPNS--KRDLSRLEDRLHWEERVRAYIKELDEIKPVIYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + G GFT ER++ +L EG +D++
Sbjct: 143 GDLNVAHNEIDLRNP---------------KSNHGNSGFTTEEREKMSTLLNEG-FVDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ EKD + WS + R RIDYFIVS+ LKD + M + G
Sbjct: 187 RHLYPEKDQSYTW-WSYMSKVRERNIGWRIDYFIVSDRLKDSLKDAGMHTDVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV +E+
Sbjct: 240 SDHCPVYIEI 249
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ D D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFIEYLEETDTDIFCLQEIKLQSGQVDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+L KK +P V++ L +
Sbjct: 51 ---------------------YYVYWNYAVKKGYSGTAILTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I EFE FY+L Y PN K R KW++ I ++ + K P+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMLTLYTPNA--KRGLERLDYRMKWEEDILSYITKLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ERKRF IL EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNPGFSDQERKRFTQILDEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW + R K + R+DYFIVSE LKD+I+ ++ +
Sbjct: 188 RYLY--PDREGAYSWWSYRMNA-RAKNIGWRLDYFIVSERLKDKIVDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELNM 250
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 153/315 (48%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K F+P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--FKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFERFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRNYLQQLDASKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K ++G GFT ER+R +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS P + R RIDYF+VS+ L+ +I + H G
Sbjct: 187 RHFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L++ + S+
Sbjct: 240 SDHCPVILDMQDISA 254
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYAQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K ++G GFT ER R +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERDRMSQLLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ D WS P + R RIDYF+VSE L+ ++ + H G
Sbjct: 187 RYFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L+L + S+
Sbjct: 240 SDHCPVILDLQDISA 254
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 152/315 (48%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K ++G GFT ER+R +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ + WS P + R RIDYF+VS+ L+ +I + H G
Sbjct: 187 RHFYPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L++ + S+
Sbjct: 240 SDHCPVILDMQDISA 254
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 152/315 (48%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ +PD+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNPDIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENG-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I C
Sbjct: 86 -EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K ++G GFT ER+R +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ + WS P + R RIDYF+VS+ L+ +I + H G
Sbjct: 187 RHFYPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L++ + S+
Sbjct: 240 SDHCPVILDMQDISA 254
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 150/315 (47%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVTKG---FYTYLKETNADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I C
Sbjct: 86 -EPEGRTITLEFENFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDALKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K ++G GFT ER+R +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSLLLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS P + R RIDYF+VSE L+ ++ + H G
Sbjct: 187 RTFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L+L + S+
Sbjct: 240 SDHCPVILDLQDISA 254
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 173/346 (50%), Gaps = 69/346 (19%)
Query: 15 KKPALSPSKK----DGETTETSSE---ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFI 67
KK A +PSK+ D + SSE ++ KK LKF +WN N + V+ N +++
Sbjct: 20 KKLARTPSKRESIPDVSGNDYSSEAATKDGKKWNLKFSSWNVNGIRAWVEKN---GHSYV 76
Query: 68 TTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW 127
T DPD+ +QE + +KD + DD + Y +W
Sbjct: 77 TAEDPDIFCVQETKC----AKDL------IPDDAN-----------------IEGYHAYW 109
Query: 128 SLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186
D Y+GT L K+ +P V++ ++K +++ +GRVI AEF+ FY + Y PN G
Sbjct: 110 LSGDKDGYSGTGLYSKQ--EPLSVTYGIDKE--EHDKEGRVITAEFDKFYFVTAYVPNAG 165
Query: 187 WKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
S+ R KWD +E++ K P++ CGDLNV+H+EID+++P+
Sbjct: 166 RGLPRLSY-RSEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANPK---------- 214
Query: 246 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGNPIGKYRG 304
NK+ GFT ER+ F +L+ G +DA+R L+ E+ + ++ GN GK G
Sbjct: 215 --SNKK---SAGFTPQERQGFSELLEAG-FVDAFRELYPEETKKYSYWTYMGNARGKNVG 268
Query: 305 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF+VSE++KD I ++ GSDHCPV L ++
Sbjct: 269 --WRLDYFVVSEKIKDGICDSLIRSE------VMGSDHCPVVLLMN 306
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 154/312 (49%), Gaps = 57/312 (18%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103
F+TWN + VKN P F F++ PDVI LQE + L D +
Sbjct: 71 FITWNVAGMRSTVKN--PLFLGFLSKLGPDVICLQETK---------------LSDKGQV 113
Query: 104 SREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
S E + ++LS + + IW A Y+GTA+ ++ +P V + L++ K+
Sbjct: 114 SEE----VTQSLSD---QYHDIWNHCTARKGYSGTAIFTRE--EPLSVLYGLQEE--KHN 162
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI E+E ++L+N Y PN G ++ R W+K + +++ + K P+I+ GD
Sbjct: 163 EEGRVITLEYEKYFLVNAYVPNAGEGLRRLNY-RIDSWEKDMCQYLCGLNQKKPVIYTGD 221
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+H+EID+ Y P E GFT ER++F +L+ G +DA+R+
Sbjct: 222 LNVAHQEIDI-------------YQPKGHEK--HAGFTPQERQKFTDLLQCG-FVDAFRY 265
Query: 282 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + F+ WS K R R+DYF+ SE L I+ CEM E Y S
Sbjct: 266 LYPHRQ---SFTYWSKRAKAKERNHGWRLDYFVTSERLVPCILECEM------FENIYIS 316
Query: 341 DHCPVSLELSEA 352
DHCP+ L L A
Sbjct: 317 DHCPLMLHLDIA 328
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 144/310 (46%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK V+WN N + +KN E +I + D+ +QE + P
Sbjct: 65 LKLVSWNVNGIRAVIKNGGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S +YQ +WS AD + YAGTAL K PKKV++ + +
Sbjct: 104 ---------LHKIPSEAKLPSYQSFWSSADKAGYAGTALFSK--IAPKKVTYGIGRKV-- 150
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AEF+ FYL+ Y PN G + R ++WD E++ + + KP+I C
Sbjct: 151 HDEEGRVITAEFDRFYLVTAYVPNAGQGLARLPY-REKEWDPDFLEYLRKLDATKPVIVC 209
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID++ P+ + GFT ER F +L LID Y
Sbjct: 210 GDLNVAHEEIDLARPD---------------TNHKTAGFTDQERSGFTKLLSSANLIDTY 254
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ F WS + R+DYF+VS+ + + E++ G G
Sbjct: 255 RHFYPDRREAYSF-WSYRTGARLINNGWRLDYFLVSQRILANVGDQEIRC------GVTG 307
Query: 340 SDHCPVSLEL 349
SDHCPV L L
Sbjct: 308 SDHCPVVLYL 317
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 166/354 (46%), Gaps = 69/354 (19%)
Query: 8 IEKECSAKK--PAL--SPSKKDGETTETSSEENSKKD----PLKFVTWNANSLLLRVKNN 59
+EK+ S KK P + S K E ET EE+ D PL +TWN L VK
Sbjct: 82 VEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLTIITWNVAGLRALVKK- 140
Query: 60 WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119
+ FIT+ D++ LQE + + P P
Sbjct: 141 --DACRFITSDKADIVLLQETK-----CAEVPTGF------------------------P 169
Query: 120 FKNYQ--IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
K ++ + + + +AG LL K+ +P KV LE + +GR+I+AE++ FYL
Sbjct: 170 VKGFKAFVGENPGKTGHAGVILLSKQ--KPIKVQTKLENVPEELGVEGRLIVAEYDKFYL 227
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEF 236
+N Y PN+G + +R+ WD +++ Q + K +I+ GDLNV+HEEID+++P+
Sbjct: 228 INAYVPNSG--RGLVNLAKRKIWDDFFIDYIKQLDASKAVIYAGDLNVAHEEIDLANPK- 284
Query: 237 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 296
N+ GFT ER F +L+ G +D YR LH +K F WS
Sbjct: 285 -----------TNRNKTA--GFTDQERGDFTRLLQAG-FVDVYRSLHPDKTGAYTF-WST 329
Query: 297 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+ R+DYF+VSE L D+++ CE+ GSDHCP++L+++
Sbjct: 330 MHNARATNIGWRLDYFVVSERLMDKVVKCEINSR------VMGSDHCPLTLQIN 377
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 164/336 (48%), Gaps = 61/336 (18%)
Query: 17 PALSPSKKDGETTETSSEENSKKD---PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
P LS S D + + SS+ +K KF +WN N + +K + E+ N PD
Sbjct: 89 PILSKSVTDYSSIDLSSDAKNKDGSPWTHKFSSWNVNGVRAWLKASGIEYVNQEC---PD 145
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
V +QE + KD PK+ E+ Y +W+ A+ K
Sbjct: 146 VFCIQETK---CSEKDLPKSELEVP-----------------------GYHSYWNSAEQK 179
Query: 134 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192
Y+GT L K+ +P V++ + K++ +GRVI AEFE FY + Y PN G K +
Sbjct: 180 GYSGTGLYSKE--EPINVTYGI--GIPKHDNEGRVITAEFEKFYFVTAYIPNAGDKLKRL 235
Query: 193 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
S+ R +WD ++++ KP++ CGDLNV+H+EID+++P K
Sbjct: 236 SY-RVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANP---------------KT 279
Query: 252 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 311
+ GFT ER+ F ++L++ +LID++R L+ +K + WS + K R+DY
Sbjct: 280 NQRSAGFTKEERESFSSLLEDNKLIDSFRDLYPDKKEAYSY-WSYRSNARKNNKGWRLDY 338
Query: 312 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 347
F+VSE LK + C+ I YGSDHCP+ L
Sbjct: 339 FLVSERLKAAV--CD----SIIRSQVYGSDHCPIVL 368
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + EF ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--EFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F +IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSSILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ LE +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVEKG---FLDFFKSVDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + + Y+ +W+ A+ K Y+GTA+ K+ +P S+ L +
Sbjct: 38 ---------LQQGQIDLDLEGYEQYWNYAEKKGYSGTAVFTKE--KPLSASYGL--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ FYL+ Y PN+ KEE + R +W+ + ++ + KP+I C
Sbjct: 85 HDKEGRVITLEYDDFYLVTVYTPNS--KEELARLEYRMEWEDAFRAYLKKLEKNKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER +F +L G ID Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNPGFSDEERAKFSELLASG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + + RIDYF++SEELKD++++ E+ + G
Sbjct: 187 RYFYPDKEGAYSW-WSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHNEIL------G 239
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 240 SDHCPVEL 247
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ K+ +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKE--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 158/321 (49%), Gaps = 69/321 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + + S+F D DV LQE ++ ++
Sbjct: 4 KLISWNVNGLRAVLGKTF--LSDF-HALDADVFCLQETKLQEGQAE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
LS P + Y W+ A+ K Y+GTAL K+ +P VS+ + ++
Sbjct: 47 ------------LSLPDYHQY---WNYAEKKGYSGTALFSKE--EPLSVSYGI--GIPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLI 217
+ +GRVI AEF Y+L Y PN+ +N QR R +W+ +E++L KP+I
Sbjct: 88 DREGRVISAEFPDCYILTVYVPNS-----QNELQRLSYRMEWEDAFREYILSLEEKKPVI 142
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H+EID+ +P A+ N GFT ER +F +L G L D
Sbjct: 143 YCGDLNVAHQEIDLKNP---ASNHHNA------------GFTDDERAKFSRLLDCGYL-D 186
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
++RFLH E + D WS + R RIDYF+VSE+L++RI +G I E
Sbjct: 187 SFRFLHPE-ERDAYSWWSYRTKARERNVGWRIDYFVVSEKLRERI-----RGASIHPE-I 239
Query: 338 YGSDHCPVSLELSEASSDSEK 358
GSDHCPV L+L+ +E+
Sbjct: 240 MGSDHCPVELDLAVCPEGAER 260
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 165/357 (46%), Gaps = 68/357 (19%)
Query: 1 MKRFFKPIEKECSAKKPALSPS-KKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNN 59
+K+ +PI + A + PS D ET S LK + WN N L +K +
Sbjct: 79 LKKTQQPISSDMKAYCEQIRPSFGLDAETLPAES--------LKIIAWNVNGLRALLKYD 130
Query: 60 WPE-FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118
F ++ D D+I L E ++ D + + E L L
Sbjct: 131 ESRYFHAYVREEDADIICLSETKI----------------DSPQVEKMEDL-----LPKY 169
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
PF+ +WS A K YAGTA+ K +P +V L+ + L +GR + EFE F+L
Sbjct: 170 PFQ----YWSCAHKKGYAGTAVCSK--LEPLQVRSHLDDSTLG-STEGRFLALEFEKFWL 222
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSH 233
++TY PN G K E R +WD + + LQ S K +IWCGDLNV+H++ID+
Sbjct: 223 VHTYVPNAGMKLERLG-DRTTQWDAVLLQ-TLQSLEKESEKGVIWCGDLNVAHQDIDIHD 280
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 293
P+ N + PGFT AER FG LK G +D +R H EK +S
Sbjct: 281 PK-------------NNRN-KSPGFTDAERNNFGETLKTG-FVDTFRHFHPEKQQFTYWS 325
Query: 294 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+ N + R K R+DYF+VSE L ++ A ++ EG GSDH PV LS
Sbjct: 326 YRFN--ARTRNKGWRLDYFVVSERLMAQVKASFVR------EGVKGSDHVPVGAILS 374
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V + LE+ +
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I C
Sbjct: 86 -EPEGRVITLEFEDFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT+ ER + +L G ID++
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS + R RIDYF+ S L +++ E+ H + G
Sbjct: 187 RHFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKVQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ LE +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 146/320 (45%), Gaps = 64/320 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 -EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ + K + G GFT ER++ +L G ID +
Sbjct: 142 GDLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + E+ D WS P + R RIDYF+ S L + ++ H + G
Sbjct: 186 RHFYPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------G 238
Query: 340 SDHCPVSLELSEASSDSEKR 359
SDHCPV L L+E + R
Sbjct: 239 SDHCPVVLTLAEVPQAAAAR 258
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ A +
Sbjct: 1 MKLVSWNVNGLRACVTKG---FMDYFNEADADIFCVQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V + LE+ +
Sbjct: 45 -------------LDLGP--EYQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I C
Sbjct: 86 -EPEGRVITLEFEGFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT+ ER + +L G ID++
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS + R RIDYF+ S L +++ E+ H + G
Sbjct: 187 RHFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 148/311 (47%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVK---KDFEASFHHLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ YQ +W+ AD K Y+GTA+ K P V++ L +
Sbjct: 47 ------------------FEGYQSYWNYADKKGYSGTAIYTKHT--PLNVTYGLGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + F+L+ Y PN+ ++E R +W+ + +V+Q KP+I C
Sbjct: 85 HDHEGRVITMEMDDFFLITVYVPNS--QDELRRLDYRMQWEDDFRAYVMQLDAIKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER++ +L G +D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTILLNNG-FVDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE LK+R++ ++ +
Sbjct: 187 RHLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISERLKERLVDAKIHTEIL------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 238 GSDHCPVELEL 248
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 158/312 (50%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + KN E +++ DPD+ +QE + E+ DD
Sbjct: 86 IKLVSWNVNGVRAWCKN---EGHKYVSKEDPDIFTIQETKCQEG----------EVPDDV 132
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F Y +WS A+ K YAGT L K +P V++ + K
Sbjct: 133 K-----------------FDGYHSYWSYAEEKGYAGTGLYSK--VEPISVTYGIGIN--K 171
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR I AE+E FY ++TY PN G + S+ R++WDK +E++ + KP+IWC
Sbjct: 172 HDKEGRCITAEYEKFYFISTYIPNAGKGLKRLSY--RQEWDKDFREYMKKLDEKKPIIWC 229
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P+ NK+ GF+ ER+ F L+ G L+D+Y
Sbjct: 230 GDLNVAHQEIDLTNPK------------TNKK---TAGFSKEEREGFTKHLEIG-LVDSY 273
Query: 280 RFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ EK + F ++ N GK G R+DYF++S+ R++ C I Y
Sbjct: 274 RHLNPEKTGEWSFWTYMMNARGKNIG--WRLDYFVLSK----RLLPCLCD--SIIRSQVY 325
Query: 339 GSDHCPVSLELS 350
GSDH P+ L ++
Sbjct: 326 GSDHAPIVLFMA 337
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F + T D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRASVTKG---FEDIFKTLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y+ +W+ AD K Y+GTA+ K P V + + +
Sbjct: 47 ------------------FEGYESYWNYADKKGYSGTAIYTKHS--PLSVQYGIGID--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ EFE FYL+ Y PN+ ++E R +W++ Q ++++ + KP++ C
Sbjct: 85 HDHEGRVVTLEFEQFYLVTVYTPNS--QDELKRLDYRMEWERDFQAYLVKLDASKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTNLLDNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ E + +S WS + + RIDYF++SE LK + ++ +
Sbjct: 187 RYLYPE---EVTYSWWSYRFKAREKNTGWRIDYFLISERLKSNLTDAKIH------TDIF 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV L+L+
Sbjct: 238 GSDHCPVELDLT 249
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 149/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGLRACVNKG---FLDYFKQTDADIFCVQETKLQEG------QIELELGSD- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ + +P V + +E+
Sbjct: 51 ---------------------YRQYWNYAQKKGYSGTAVFTR--LEPLSVRYGIEEDE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+N Y PN K + + R +W++R + ++ Q KP+I C
Sbjct: 86 -EPEGRIITLEFQHFYLVNVYTPNA--KRDLSRLSYRLEWEERFRRYLQQLDAVKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT+ ER + +L G ID++
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNLGNSGFTLEERGKMTDLLAAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
RF + ++ D WS + R RIDYF+VS L ++++ E+ H + G
Sbjct: 187 RFFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAEIDCHVL------G 239
Query: 340 SDHCPVSLELSE 351
SDHCPV L +S+
Sbjct: 240 SDHCPVRLTVSK 251
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNVDIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 144/313 (46%), Gaps = 64/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V FS + D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVNKG---FSEYFAQTDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I AL P + Y W+ A+ K Y+GTA+ K +P V + LE+ +
Sbjct: 39 ----QEGQI---ALDYPDYHQY---WNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 -EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ + K + G GFT ER++ +L G ID +
Sbjct: 142 GDLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + E+ D WS P + R RIDYF+ S L + ++ H + G
Sbjct: 186 RHFYPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------G 238
Query: 340 SDHCPVSLELSEA 352
SDHCPV L L+E
Sbjct: 239 SDHCPVVLTLAEV 251
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 150/312 (48%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ LQE ++ A P N
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFQKENADIFCLQETKVQA---DQIPFN-------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P K+ + + + +
Sbjct: 47 ------------------LEGYYQYWNFAQKKGYSGTAIFTKK--EPMKICYGIGQE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE Y++ Y PN+ + + R KW++ +F+ KP+I+C
Sbjct: 85 HDKEGRVITLEFEKHYVVTVYTPNS--QRGLARLEYRMKWEEEFLKFIKDLEKNKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P N+++ GF++ ER +FG I+K G ID +
Sbjct: 143 GDLNVAHEEIDLKNP------------SSNRKN---AGFSMEERNKFGEIIKSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K + WS + RIDYF VSE LKDR+ A + G
Sbjct: 187 RYFYPDK-TNAYTWWSYMFNARVNNAGWRIDYFCVSEILKDRLKA------AVIYNDVMG 239
Query: 340 SDHCPVSLELSE 351
SDHCPV LE+ E
Sbjct: 240 SDHCPVGLEMEE 251
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ +QE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCVQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 153/312 (49%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAVVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LDLPGYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP+I C
Sbjct: 85 HDTEGRVITLEFENFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 187 RYFY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 152/310 (49%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFKEVDADIFCIQESKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +LIL + Y +W+ A K Y+GTA+ KK +P V + L +
Sbjct: 42 ----QIELIL---------EGYHQYWNYAIKKGYSGTAVFTKK--EPLSVRYGLGDN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W++RI+E++L KP+I C
Sbjct: 85 TEPEGRILTLEYEGFYLVNVYTPNS--QRDLARLPYRLEWEERIREYLLGLDQIKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + K + G GFT ER + +L G +DA+
Sbjct: 143 GDLNVAHFEIDLKNA---------------KSNRGNSGFTDEERGKMTRLLGSG-FVDAF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + R RIDYFIVSE+LK+RI+ ++ G
Sbjct: 187 RYKYPEAEGAYTW-WSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIHCD------IMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV+LEL
Sbjct: 240 SDHCPVALEL 249
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 32/230 (13%)
Query: 122 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+YQ +W+ A+ K Y+GTA+ K P V + +E + EP+GR+I EFE Y++
Sbjct: 18 SYQQYWNYAEKKGYSGTAVFTK--IPPLSVRYGIEDDS---EPEGRIITLEFEACYVVTV 72
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 239
Y PN K + + R +W+ R + ++L KP+I CGDLNV+HEEID+ +
Sbjct: 73 YTPNA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACGDLNVAHEEIDIKNA----- 125
Query: 240 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 299
K + G GFT ER + +L G D +R+LH ++ D WS P
Sbjct: 126 ----------KSNRGNSGFTDEERSKMTQLLDAG-FTDTFRYLHPDR-ADAYTWWSNMPK 173
Query: 300 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ R RIDYF++S L+D+II + H + GSDHCP+ LE+
Sbjct: 174 VRERNIGWRIDYFLISNRLRDKIIDARIDAHVL------GSDHCPIVLEV 217
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 152/310 (49%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + ++ F +F+ +PD++ LQE++ ++P +L +
Sbjct: 1 MKLISWNVNGIKAILQKG---FVDFVKQENPDILCLQEIKT------NSPSQILDLSE-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ K+ +PK +++ ++
Sbjct: 50 ---------------------YKQYWNTASKKGYSGTAIFTKQ--KPKNITYGMDNFP-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI AE++ +YL+N Y PN+ + R KWD + E++L + KPLI+C
Sbjct: 85 -DEEGRVITAEYDNYYLVNVYTPNS--QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ NK+ GFT ER F + E +D +
Sbjct: 142 GDLNVAHKEIDLKNPK------------TNKK---HAGFTEEERMGFDKYV-ENNFVDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R +KE D +S+ N K G RIDYF S + + + + L+ YG
Sbjct: 186 RLFNKESDNYTWWSYMHNARAKNIG--WRIDYFCTSNSIVNYV------KKSVILDKIYG 237
Query: 340 SDHCPVSLEL 349
SDHCP+ LEL
Sbjct: 238 SDHCPIKLEL 247
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 148/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ T D D+ LQE +
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDYFTDIDADIFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + + Y+ +W+ A K Y+GTA+ K+ +P +V + L +
Sbjct: 38 ---------LQEGQINLELEGYEQYWNYAVKKGYSGTAIFTKQ--KPIEVKYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FYL+N Y PN+ + E R KW+ +E++ KP+I C
Sbjct: 85 HDQEGRVITLEFEDFYLVNVYTPNS--QSELARLDYRMKWEDIFREYLKDLDNIKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L+ G D++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKMTELLESG-FTDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ EK+ + WS + RIDYFIVSE++KD+I ++ + G
Sbjct: 187 RYLYPEKEGSYSW-WSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIHSN------IMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVMLEL 249
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 153/315 (48%), Gaps = 67/315 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F ++ D D+ +QE ++ + +++ D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLDYFQEVDADIFCVQETKLQSG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P V + L ++
Sbjct: 47 ------------------LKGYHQYWNYAEKKGYSGTAVFTKE--EPLSVHYGL--GDVE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR+I EF FYL+N Y PN+ + + R +W+ RI+ +++ KP++ C
Sbjct: 85 NEPEGRIITLEFPKFYLVNVYTPNS--QRDLARLPYRLEWEDRIRSYLIDLDKDKPVLLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + G GFT ER + +L G ID +
Sbjct: 143 GDLNVAHQEIDLRNP---------------KSNQGNSGFTKEERAKMSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + EK + ++W + I K R + + RIDYFI S+ L + I E+ H
Sbjct: 187 RYFYPEK--EGAYTW-WSYINKARERNIGWRIDYFIASKRLANIIKNAEIHSH------I 237
Query: 338 YGSDHCPVSLELSEA 352
GSDHCP+ LEL +
Sbjct: 238 MGSDHCPIVLELDSS 252
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 62/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L VK FS++ D D+ +QE ++ A
Sbjct: 1 MRFISWNVNGLRAAVKKG---FSDYFKEADADIFCVQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P V + L +
Sbjct: 42 ------------QIELEGLEGYHDYWNYAVKKGYSGTAVFTKE--EPLSVQYGLPEDV-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI EF FY + Y PN+ + E R +W++ + ++ KP+++C
Sbjct: 86 HNQEGRVITLEFPAFYFVTVYTPNS--QAELKRLDYRTEWEQAFADHIIALDKQKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER FG +L G +D +
Sbjct: 144 GDLNVAHQEIDLKNP---------------KTNRKNPGFSDQERAMFGQLLDNG-FVDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E++ D WS + R RIDYF+VS L D I + + G
Sbjct: 188 RYLYPEQE-DAYSWWSYRMNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVL------G 240
Query: 340 SDHCPVSLELS 350
SDHCPV LE++
Sbjct: 241 SDHCPVELEIA 251
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L ++ F ++ + D+ +QE ++ + HQ
Sbjct: 1 MKFVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKL---------QPHQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 44 ------------GLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQ 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P +A + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDTF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K D WS + + RIDYFIVS+ LKD +I E+ + G
Sbjct: 190 RYFYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------G 242
Query: 340 SDHCPVSLELSE 351
SDHCPV LE+ +
Sbjct: 243 SDHCPVVLEIDD 254
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 153/312 (49%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 187 RYFY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 146/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 6 MKLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 50 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 90 HDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 148 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 191
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 192 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 243
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 244 GSDHCPVELELN 255
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 153/318 (48%), Gaps = 69/318 (21%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P ++WN N L +K F +F+ + PDV+ LQE ++ A + D
Sbjct: 3 PTHLLSWNVNGLRAVLKKG---FDDFLASQQPDVLCLQETKISADLTADF---------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
A + P+ ++W+ A+ K Y+GTA++ + +P V + L
Sbjct: 50 -------------AFAGYPY----VYWNCAEKKGYSGTAIISQ--IEPISVRYGLGIE-- 88
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE----FVLQCSG-- 213
K++ +GRVI AEFE +YL+ Y PN+ +E +R R+ D R E F+ G
Sbjct: 89 KHDQEGRVITAEFEDYYLVTVYTPNSQNHDEN---KRPRRLDYRTLEWDVDFLAYVKGLE 145
Query: 214 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+++CGDLNV+H EID+++P K + GFT ER RF AI++
Sbjct: 146 VTKPVVFCGDLNVAHTEIDLANP---------------KTNRKNAGFTDEERGRFDAIIE 190
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
G ID +R L+ ++ + WS + R RIDYF VS+ +K++I +
Sbjct: 191 AG-FIDTFRHLYPDRTEQYSW-WSYRAAARQRNIGWRIDYFCVSDAVKNQIRDATI---- 244
Query: 332 IELEGFYGSDHCPVSLEL 349
L GSDHCPV L L
Sbjct: 245 --LADTLGSDHCPVGLRL 260
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 146/311 (46%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + + D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FYEYFKEANADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M + Y +W+ A+ K Y+GTA+ K +P V + LE+
Sbjct: 39 ----QEGQIEMEIGEA-----YHQYWNYAEKKGYSGTAVFTK--MEPLSVRYGLEE---D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ G KP++ C
Sbjct: 85 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER++ ++L G +D Y
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNRGNSGFTPEEREKMTSLLAAG-FVDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ D WS P + R RIDYF+ SE L ++ + + G
Sbjct: 187 RYFYPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVM------G 239
Query: 340 SDHCPVSLELS 350
SDHCPV LEL
Sbjct: 240 SDHCPVVLELG 250
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYAYWNYAVKKGYSGTAIFSKK--EPLAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q K P+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDKKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 152/312 (48%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--H 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E F+L+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYEKFFLVNTYTPNS--QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P AA + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K D WS + + R+DYFIVSE LKD +I ++ + G
Sbjct: 190 RYFYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------G 242
Query: 340 SDHCPVSLELSE 351
SDHCPV L + E
Sbjct: 243 SDHCPVVLIVKE 254
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 146/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACVG---KDFETSFKSLDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ AD K Y+GTA+ K+ P V++ + +
Sbjct: 47 ------------------FNGYQSYWNYADKKGYSGTAIFTKQT--PLNVTYGMGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++E + R +W+ + ++L KP+I C
Sbjct: 85 HDHEGRVITLETENFFLVTVYTPNS--QDELRRLEYRMRWEDDFKAYLLALDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTELLAGG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + R RIDYF++SE LK+RI ++ Y
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIH------TDIY 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 238 GSDHCPIELDL 248
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 143/310 (46%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKALDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + QP V++ + A ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VQPLSVAYGI--GAPEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DDEGRVITMEFEELYLVTVYTPNA--KRALERLDYRMAWEDAFRAFLLNLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 144 DLNVAHKEIDLKNP---------------KSNRHNAGFTDEERGKFGELLAAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ + WS + RIDYF+VSEEL+ R+ A E+ +GS
Sbjct: 188 ALYPDRRGAYTW-WSYLRHARETNAGWRIDYFLVSEELRGRVAAAEIHAD------IFGS 240
Query: 341 DHCPVSLELS 350
DHCPVSL LS
Sbjct: 241 DHCPVSLTLS 250
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + D D+ LQE ++ +
Sbjct: 4 KLISWNVNGLRAAVKKG---FLEYFEEVDADIFCLQETKLQEGQIE-------------- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P +K+Y W+ A K Y+GTA+ K +P V + L ++
Sbjct: 47 ------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EFE FY++ Y PN+ + E R ++ I E+V KP++ CG
Sbjct: 88 DTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID+ +P K + GF+ ER +F A L G ID++R
Sbjct: 146 DLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFR 189
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ + G
Sbjct: 190 YFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------G 241
Query: 340 SDHCPVSLELS 350
SDHCPV LEL+
Sbjct: 242 SDHCPVELELN 252
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 147/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVK------NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + N N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRANETRSVLNKIKKANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINTEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKD--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 155/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ QE + D
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 NV-----------------EDYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEGFYIITLYTPNA--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKNQIKDAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDSDIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FTDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQESAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 150/312 (48%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K VTWN N L V F +F D D+ ++QE ++ + D P
Sbjct: 1 MKLVTWNVNGLRACVNKG---FMDFFNEVDSDIFSVQETKLQKGQIEMDIP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W A+ K Y+GTA K +P V LE+
Sbjct: 49 ---------------------GYEEYWDYAEKKGYSGTATFSK--IKPISVKTGLEEE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
K+ +GRVI AE+E FYL+N Y PN+ + E R +W+ +++ + KP+I
Sbjct: 84 KFSKEGRVITAEYENFYLVNVYTPNS--QNELKRLDYRMEWEDYFADYLCELDKVKPVIM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P+ NK++ GFTI ER + ++LK G +D+
Sbjct: 142 CGDLNVAHREIDLKNPK------------TNKKN---AGFTIEERDKMTSLLKRG-FVDS 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
YR+L+ D++ ++ WS + RIDYFIVS+ +KD+I ++
Sbjct: 186 YRYLY--PDIEGVYTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKI------FSDV 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 238 MGSDHCPVLLDI 249
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ K+ +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKQ--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITVEFEGFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 149/311 (47%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVKKN---FQESFQQLDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F Y +W+ A+ K Y+GTA+ K +P VS+ L +
Sbjct: 46 Q-----------------FPGYTSYWNYAEKKGYSGTAIYTKH--KPIHVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++E R KW+ + ++ Q KP+I C
Sbjct: 85 HDQEGRVITLEMEDFFLITVYVPNS--QDELKRLDYRMKWEDDFRAYITQLDQIKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ NK + GFT ER + +L G ID +
Sbjct: 143 GDLNVAHEEIDLKNPK------------TNKRN---AGFTDEERNKMTRLLDNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ E+ +S WS + + RIDYF++SE LK+R+ ++ +
Sbjct: 187 RYLYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTEIM------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 238 GSDHCPVELEL 248
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 145/323 (44%), Gaps = 60/323 (18%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T + + N K K WN N L +K ++ + PDV+ +QE + G
Sbjct: 165 TTSRAAPNGKPINFKIACWNVNGLKNAIKEGCLQYLEYE---KPDVLCIQETK---CGEG 218
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK 148
+ P + + P + Y W+S YAGT + K QP
Sbjct: 219 EIPADS---------------------AVPGYYGY--WYSAQKRGYAGTGMYSKT--QPI 253
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
+VSF L +++ +GRVI AEF FYL+ Y PN+G K E + R+ WD + ++
Sbjct: 254 RVSFGLN--VPEHDTEGRVITAEFADFYLVTAYVPNSGQKLE--TLPYRQTWDVAFRTYL 309
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
L KP++ CGDLNV+H EID+ +P K + GFT ER+ F
Sbjct: 310 LSLDAKKPVVLCGDLNVAHNEIDLKNP---------------KTNKRSAGFTPQEREGFT 354
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
IL +D++R L+ E+ +S+ N G R+DYF+VS+ + ++
Sbjct: 355 TILGT-EFVDSFRVLYPEESAYSFWSYRHNSRALNVG--WRLDYFVVSQRFMQSVADSQI 411
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
+ YGSDHCP+ L LS
Sbjct: 412 RSQ------VYGSDHCPIVLHLS 428
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 146/310 (47%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L R N F+++ D DV +QE +M
Sbjct: 1 MKLVSWNVNGL--RACVNKGCFTDYFEQIDADVFCVQETKMQEG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS N +W+ A K Y+GTA+ K +P V + LE+
Sbjct: 43 ------------QLSLELGDNIHSYWNYALKKGYSGTAVFSK--IEPISVRYGLEEDE-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
E +GR++ EF +FYL+N Y PN K + + R +W+ R +++++Q KP+I C
Sbjct: 87 -EAEGRILTLEFASFYLVNVYTPNA--KRDLSRLPYRLEWEDRFRKYIVQLDEKKPVIIC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER +F +L G +D++
Sbjct: 144 GDLNVAHQEIDIKNA---------------KSNVGNSGFTHEERGKFNELLGAG-FLDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ ++ D WS P + R RIDYF++SE+L+ + + H G
Sbjct: 188 RELYPDR-TDAYTWWSFMPKVRERNIGWRIDYFLISEKLRPHLKEAGIDSH------IMG 240
Query: 340 SDHCPVSLEL 349
SDHCPV +EL
Sbjct: 241 SDHCPVYVEL 250
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F + D D+ A+QE ++ + EL+
Sbjct: 1 MKAVSWNVNGLRACLGKG---FLEYFKDVDADIFAIQETKLQ--------EGQVELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ K P V++ ++ +
Sbjct: 47 ------------------LEGYEQYWNYAVKKGYSGTAVFTK--ISPLSVAYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY +N Y PN+ + R KW+ +E++++ G KP+I C
Sbjct: 85 HDAEGRVITLEFENFYFVNVYVPNS--QRGLTRLDYRMKWEDDFREYLIKLDGIKPVICC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+EID+ +P K + GFT ER++ +L G IDA+
Sbjct: 143 GDKNVAHQEIDLKNP---------------KSNRKNAGFTDEERQKMTELLNSG-FIDAF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ +K D WS + + RIDYFIVSE LKD+I E+ H + G
Sbjct: 187 RYLYPDKK-DAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVM------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 240 SDHCPVLLDI 249
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 145/313 (46%), Gaps = 63/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ LQE ++ A
Sbjct: 1 MKLISWNVNGLRACVTKG---FMDYFNESDADIFCLQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P Y +W+ A K Y+GTA+ K +P V + +E+ +
Sbjct: 42 ------------QIELPLEGRYSQYWNYAVKKGYSGTAVFTK--VEPLTVRYGIEEDS-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EF+ FYL+N Y PN K + + R +W+ R + ++L+ KP+I C
Sbjct: 86 -EDEGRILTLEFDRFYLVNVYTPNA--KRDLSRLGYRLEWEDRFRAYLLELDAQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNHGNSGFTTEERGKMTDLLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R LH E+D D WS P + R RIDYF+ S L A + GI+ G
Sbjct: 187 RHLHPERD-DAFSWWSFMPKVRERNIGWRIDYFLASARL-----APHVTDAGID-SAILG 239
Query: 340 SDHCPVSLELSEA 352
SDHCPV ++L +A
Sbjct: 240 SDHCPVMVQLEDA 252
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 147/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 153/312 (49%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFHEMDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A K Y+GTA+ KK +P VS+ +
Sbjct: 39 ---QEGQIEL-------DLEGYHQFWNYAIKKGYSGTAVFTKK--KPLSVSYGVADE--N 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EFE FYL+N Y PN+ + + R W+ RI+E+++Q + KP++ C
Sbjct: 85 EEDEGRILTLEFEDFYLINVYTPNS--QRDLARLHFRLNWEDRIREYLIQLNKLKPIVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H +ID+ + K + G GFT ER + +L G ID++
Sbjct: 143 GDLNVAHSDIDLKNA---------------KSNRGNSGFTEEERGKMTDLLNSG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + DM ++W + + R K + RIDYFIVSEELK R+ ++ H +
Sbjct: 187 RYFY--PDMTDKYTW-WSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 -GSDHCPVVLQI 249
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSEGMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--KPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +K++I E+ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 63/318 (19%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + D +K ++WN N L V F + D D+ LQE ++ A +
Sbjct: 2 DEEDDKVKLISWNVNGLRAVVGKG---FVDIFNELDADIFCLQETKLQAGQIE------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
L P ++ Y W+ A+ K Y+GTA+ + +P V + +
Sbjct: 52 -------------------LDLPGYEQY---WNYAERKGYSGTAVFTR--IKPLSVRYGM 87
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 213
+ +++ +GRVI E+++FYL+N Y PN+ K+ R KW+ + ++
Sbjct: 88 D--IAEHDTEGRVITLEYDSFYLVNVYTPNS--KDGLARLPYRMKWEDDFRNYLKTLEQT 143
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
KP++ CGDLNV+HEEID+ +P K + GF+ ER + +L G
Sbjct: 144 KPVVMCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG 188
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
ID +R+ + +K + + WS + RIDYFIVS+ LK+R+I+ +
Sbjct: 189 -FIDTFRYFYPDKTGEYSW-WSYRFNARKNNAGWRIDYFIVSDALKERLISASIH----- 241
Query: 334 LEGFYGSDHCPVSLELSE 351
+ +GSDHCPV LEL E
Sbjct: 242 -QEIFGSDHCPVELELKE 258
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDDT 101
KF++WN N L +K+ F D D +QE ++ P D P HQ
Sbjct: 3 KFISWNVNGLRAAIKHG---FLQVFNEMDADFFCIQETKLAPGQLDLDLPDYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ K+ P V + +
Sbjct: 54 ------------------------YWNYAEKKGYSGTAIFAKQ--PPLSVQYGINVPEFD 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E+ FYL+NTY PN+G + + F R +++ E+V Q S K ++WC
Sbjct: 88 HE--GRVITLEYPDFYLINTYVPNSGAELKRLDF--RHGFNEAFYEYVNQLSQQKSIVWC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ + PGFT ER F +LK G D +
Sbjct: 144 GDLNVAHQEIDLKNPQ---------------SNHHHPGFTDEERFDFSKLLKSG-FTDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + R RIDYF+ S +L +++ ++ + G
Sbjct: 188 RYFYPDQEHSYSW-WSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIH------DQILG 240
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 241 SDHCPVELDI 250
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYFIVSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 57/320 (17%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+++PLK WN N + +K+ +F F P ++ L E ++
Sbjct: 87 SQEEPLKIWHWNVNGIRAVLKSG--KFQEFCEKAQPHILCLNETKI-------------- 130
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKKCFQ---PKKVS 151
D A +E + L A P Y W+ + YAGTA+L+ K ++ P KV
Sbjct: 131 ---DVDALAKENIKLQIAKWFPIDTQY---WNCCIVKKGYAGTAILINKNYKGSKPTKVE 184
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + + K++ +GR++ A+F+ F L+ TY PN G + R +WD+ ++
Sbjct: 185 YGIGIS--KHDKEGRMVNAQFDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKNT 242
Query: 212 ---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+GKP+IWCGDLNV++E ID+ Y P KE G+TI ER F A
Sbjct: 243 EVTTGKPVIWCGDLNVANEPIDI-------------YNPKGKEK--SAGYTIQERNSFKA 287
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
LK+ ID YR L+ +S W+ + + + R+DYF+VS+ + ++ E+
Sbjct: 288 FLKDRAFIDTYRHLNPH---SVKYSYWNLRSGARDKDQGWRLDYFVVSDFMMPSVLTSEI 344
Query: 328 QGHGIELEGFYGSDHCPVSL 347
++GSDHCP+SL
Sbjct: 345 NNE------YHGSDHCPLSL 358
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKLQDGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +K++I E+ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLSVTYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E + R KW++ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEEDFQSYLHKLDETKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTELLNNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE L+DR+I ++ +
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLIDAKIHTETM------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ ++L
Sbjct: 238 GSDHCPIEIDL 248
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 146/314 (46%), Gaps = 73/314 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMP-AAGSKDAPKNHQELKDD 100
+KFV+WN N L +K F + + FD D +QE +M D P HQ
Sbjct: 1 MKFVSWNVNGLRAVLKKG---FEDIVKEFDADFFCIQETKMQEGQADVDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
++S A+ K Y+GTA+ K +P V+++ E
Sbjct: 53 -------------------------YFSYAEKKGYSGTAIFTKH--EPLSVTYNFEG--- 82
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIW 218
++ +GR +L E++ FYLLN Y PN + E + R +W+ ++ + + + K ++
Sbjct: 83 -HDDEGRAVLLEYDKFYLLNVYVPNA--QPELKRLEYRMQWEDDLRAMLSELAKKKHVVM 139
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + G PGF+ ER + +L G D
Sbjct: 140 CGDLNVAHEEIDLKNP---------------KTNRGNPGFSDEERAKMTELLGAG-FTDT 183
Query: 279 YRFLHKEKDMDCGFSW---SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
+R L+ E+ + +SW GN G RIDYF+V E LKD+I +
Sbjct: 184 FRHLYPEQ--EGAYSWWSYRGNARKNNTG--WRIDYFVVDEGLKDKIKEAAIH------P 233
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPVSLEL
Sbjct: 234 DVMGSDHCPVSLEL 247
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F +F + D+ +QE ++ + EL D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDFFMEENADIFCIQESKLQ--------EGQIELNLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K+ +P VS+ + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAVFTKE--KPLYVSYGI--AGRE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
EP+GR + EFE FYLLN Y PN+ K + R +W+ I+E++L+ KP+I C
Sbjct: 85 TEPEGRSLTLEFENFYLLNVYTPNS--KRDLARLPYRLEWEDEIREYILELEQKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H +ID+ + + + G GFT ER + ++L EG +D++
Sbjct: 143 GDLNVAHLDIDLKNA---------------RSNRGNSGFTDEERGKMTSLLSEG-FVDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRI----IACEMQGHGIE 333
R+L+ E+ + ++W + + K R + + RIDYFIVS++LK+ I I C++
Sbjct: 187 RYLYPEQ--EGAYTW-WSYMAKVRERNIGWRIDYFIVSDKLKEHILDSKIYCDIM----- 238
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP+ LE++
Sbjct: 239 -----GSDHCPIMLEMA 250
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEVPALYEDPPDQKTSSSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 147/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MRLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 275
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 276 NVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -----NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 275
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 276 NVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 146/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ D D+ LQE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FEEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGF--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++ C
Sbjct: 85 HDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ + D+ +QE ++ + HQ
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKKVNADIFCIQETKL---------QPHQT----- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 44 ------------DLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQ 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P +A + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDTF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K D WS + + RIDYFIVS+ LKD +I E+ + G
Sbjct: 190 RYFYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------G 242
Query: 340 SDHCPVSLELSE 351
SDHCPV LE+ +
Sbjct: 243 SDHCPVVLEIDD 254
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 147/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ V+
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF+TFYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K N F +F+ DPD++ LQE +K P + ++L T
Sbjct: 1 MKLISWNVNGLRAVLKKN---FLDFLAKEDPDILCLQE-------TKCTPDDVEQLWPAT 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +W+ A K Y+GTA+ K K +S SL +
Sbjct: 51 ---------------------FTTYWNTAQKKGYSGTAIFTKA----KPISVSLGINCPE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ +E+ F+L+N Y PN+ K E R++WD ++ + KP+I+C
Sbjct: 86 HDMEGRVLTSEYPEFFLVNVYVPNS--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+++P K + GFT ER F ++K G ID +
Sbjct: 144 GDLNVAHTEIDLANP---------------KANVKNHGFTPEERAGFSTVIKAG-FIDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R K +SW +P+G R + + RIDYF++S L+ R+ +Q +
Sbjct: 188 REFEKGGGH---YSW-WSPMGGARSRNVGWRIDYFLISSALRPRLKRAFIQPN------I 237
Query: 338 YGSDHCPVSLELS 350
GSDHCPV +ELS
Sbjct: 238 PGSDHCPVGIELS 250
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERVDYRMEWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPALYEDPPDQKTAPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+TF L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDTFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEE-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNVSH+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
RFL+ E+ + +SW +G R K + R+DYF+ SE LK +I ++
Sbjct: 188 RFLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE------I 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 239 MGSDHCPVELHM 250
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 148/311 (47%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ + D+ LQE ++ QE + +
Sbjct: 2 MKLISWNVNGLRACVNKG---FYDYFKEANADIFCLQETKL------------QEGQIEM 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ E Y +W+ A+ K Y+GTA+ + +P V + LE+
Sbjct: 47 EIGEE----------------YHQYWNYAEKKGYSGTAVFTR--MEPLSVRYGLEE---D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ KP++ C
Sbjct: 86 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + GFT ER++ ++L G +D Y
Sbjct: 144 GDLNVAHQEIDLKNA---------------KSNRNNSGFTPEEREKMTSLLAAG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ D WS P + R RIDYF+ SE L A + G GI+ + G
Sbjct: 188 RYFYPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERL-----APSLLGAGIDSQVL-G 240
Query: 340 SDHCPVSLELS 350
SDHCPV LE
Sbjct: 241 SDHCPVVLEFG 251
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 152/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKL-QAGQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTAIFTKT--EPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDDEGRVITLEFDKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 187 RYFY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIDE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNVSH+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
RFL+ E+ + +SW +G R K + R+DYF+ SE LK +I ++
Sbjct: 188 RFLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE------I 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 239 MGSDHCPVELHM 250
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + + D D+ LQE ++ A G D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEYFD---SVDADIFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GT KK +P V + L +
Sbjct: 45 -------------LDLPAYKDY---WNYAVKKGYSGTXXFTKK--EPLSVQYGLGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 187 RYFY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 153/312 (49%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + E +++FD DV +QE T
Sbjct: 1 MKLVSWNVNGIRASVKKGFEEV---VSSFDADVFCVQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +S +Y+++ + A+ K Y+GTA+L KK K ++F+++ +
Sbjct: 37 KAQDDQVKEALAGIS-----DYELFCNSAEKKGYSGTAILSKK----KPLTFTVDMGKEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+ E+E F+L+N Y PN+G R WDK ++ + S KPLI
Sbjct: 88 HDTEGRITHVEYEEFHLVNVYVPNSG--SGLKRLDYRSIWDKDFTAYLKKLSESKPLIIT 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-GFTIAERKRFGAILKEGRLIDA 278
GD NV+H D+++P K ++ + GFT E F AILKE L+D+
Sbjct: 146 GDFNVAHTANDLANP---------------KSNYNKTSGFTQVEIDGFDAILKELNLVDS 190
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R LH F WS + R RIDYF+VSE + ++ + E+ +
Sbjct: 191 FRTLHPTTFHKYTF-WSMRGGARGRNVGWRIDYFLVSESIWPKVQSAEIH------DQVM 243
Query: 339 GSDHCPVSLELS 350
GSDHCP+SLE+S
Sbjct: 244 GSDHCPISLEIS 255
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 151/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E+ + D D+ LQE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLEY---FESVDADIFCLQETKL-QAGQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P +K+Y W+ A K Y+GTA+ K +P V + L+ +
Sbjct: 45 -------------LDLPEYKDY---WNYAVKKGYSGTAIFTK--IEPISVRYGLDIP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++ C
Sbjct: 85 HDTEGRVITLEFEKFFMITVYTPNS--QAELKRLDYRMTFEDAILTYVKKLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F L+ G +D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTTFLEAG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + + RIDYF+VSE LKD ++ ++ +
Sbjct: 187 RYFY--PDLEGAYSWWSYRMNARAQNTGWRIDYFVVSERLKDNLVDAKIHLDVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 13 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 64
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 65 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 100
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 101 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 155
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 156 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 204
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 205 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 258
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 259 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 296
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 169/344 (49%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KTATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ +++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEALRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 149/312 (47%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK + E + D D+ LQE ++ +++ D
Sbjct: 1 MKLISWNVNGLRAAVKKGFLE---YFEEVDADIFCLQETKLQEG----------QIELDL 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA Y+ +W+ A K Y+GTA+ K +P V + L +
Sbjct: 48 KA-------------------YKDYWNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R ++ I E++ KP++ C
Sbjct: 85 HDTEGRVITLEFEAFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYIKNLDKTKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +F A L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + R RIDYF+VS+ LKD+++ ++ +
Sbjct: 187 RYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVL------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 239 GSDHCPVELELN 250
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 146/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L+ TY PN G
Sbjct: 122 PSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTTYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 151/313 (48%), Gaps = 65/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I + L P Y+ +W+ A+ K Y+GTA+ + +P+ V + +E+ A
Sbjct: 39 ----QEGQIGIE-LGEP----YRKYWNYAEKKGYSGTAIFTR--IEPQSVRYGMEEDA-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I C
Sbjct: 86 -EPEGRIITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDAHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNQGNSGFTPEERDKMTRLLEAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H+ D ++ WS P + R RIDYF+VS L D I ++
Sbjct: 187 R--HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLNDFIKDAKIDA------AIT 238
Query: 339 GSDHCPVSLELSE 351
GSDHCPV LE+ +
Sbjct: 239 GSDHCPVILEMED 251
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 146/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL + + N I +PDV+A+QE ++ A G K H
Sbjct: 1 MLFISWNIDSLNAALTGDSDRAHETRSVLNKIKEANPDVVAIQETKLRANG---PTKKHC 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F++YQ W A YAGT L KK + P+ VS
Sbjct: 58 DILADI------------------FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ L + +GR+I EF +FYL Y PN+G E R WD + QE++ +
Sbjct: 99 YPLIGAPDTMDQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H+EID+ HPE + GFT ERK F +L
Sbjct: 157 DQNKPVIASGDYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G ID +R+++ D+ +SW I K RIDY++VS+ L D+I +M
Sbjct: 202 SLG-FIDTFRYIN--GDITDVYSWWSQRIRTSKTNNSGWRIDYYLVSQRLADKIEQSKMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ L++
Sbjct: 259 DTGDR------KDHCPILLKI 273
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 153/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D+ LQE+++ QE + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESSADIFCLQEIKL------------QEGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 47/316 (14%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ + LK +WN L V N N++ DPDV+ LQE + D P
Sbjct: 82 DGRTSTLKICSWNVAGLRAWVNKN---GLNYVIEEDPDVLCLQETK---CTENDLPGQVL 135
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++K+ K + +S+ + Y W + +G +L K +P KV++ L
Sbjct: 136 QMKNGPKVTN---------VSNSGY--YMYWCNAKKKGCSGVSLWCK--LKPLKVTYGL- 181
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 214
+++ +GR+I AEFE +Y++ TY PN+G K + RR W+ + +V + K
Sbjct: 182 -GIKEHDSEGRLITAEFEKYYIITTYVPNSGQKLIRLDY--RRIWNTDYKNYVGELKKKK 238
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I CGD NV+H EID+++P NK + GFT ER F A+L++G
Sbjct: 239 PVIMCGDFNVAHTEIDIANPN------------SNKRN---AGFTEEERSDFTALLEDG- 282
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
ID +R L+ EK F W+ + + K R+DYFIV+++++D I C+ +
Sbjct: 283 YIDTFRKLNPEKTGAYTF-WTYMMNARSKNKGWRLDYFIVTKDIEDDI--CD----SVIR 335
Query: 335 EGFYGSDHCPVSLELS 350
GSDHCP+ L L+
Sbjct: 336 SSVMGSDHCPIVLNLA 351
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 144/308 (46%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAETFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER+ F +L +G +D +
Sbjct: 143 GDLNVAHHEIDLKNP---------------KSNHHNAGFTDEERQSFTKLLDQG-FMDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +K+ D WS + R RIDYF+ S+ L D I ++ L +G
Sbjct: 187 RHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFG 239
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 240 SDHCPVEL 247
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQG-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVAYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEEKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F +L+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRVLEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKEQITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHI 250
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 153/325 (47%), Gaps = 65/325 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++
Sbjct: 1 MKLISWNVNGLRACVNKG---FIDYFKASDADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I + S Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 39 ----QEGQICLELGES-----YRQYWNYAEKKGYSGTAVFTR--IEPLSVRYGMEEDR-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I C
Sbjct: 86 -EPEGRMITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ + K + G GFT ER + +L G D +
Sbjct: 143 GDLNVAHQEMDLKNA---------------KSNHGNSGFTPEERDKMTRLLDAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H+ D ++ WS P + R RIDYF+VS LK+ I E+
Sbjct: 187 R--HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLKEYIKDAEIDA------AIT 238
Query: 339 GSDHCPVSLELSEASSDSEKREKKN 363
GSDHCPV LE+ + +S KR + N
Sbjct: 239 GSDHCPVILEMEDLPVESPKRGEHN 263
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 151/317 (47%), Gaps = 63/317 (19%)
Query: 35 ENSKKD-PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E+ K D P++F++WN N L + +PEF D D+ LQE ++
Sbjct: 4 EHEKGDYPMRFISWNVNGLRACLTKGFPEF---FQQIDADIFCLQETKLQQG-------- 52
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFS 153
+ +++L P ++ Y W S Y+GTA+ KK +P VS+
Sbjct: 53 ------------QVEMVL------PGYRQY--WNSAVKKGYSGTAVFSKK--EPLSVSYG 90
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 212
L +++ +GRVI EF FYL Y PN+ +E R +W+ ++++ S
Sbjct: 91 L--GIEEHDQEGRVITLEFPAFYLTTVYTPNS--QEGLKRLSYRMEWEDAFRDYLKGLDS 146
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP++ CGD+NV+H+EID+ +P K + GFT ER+RF +L
Sbjct: 147 KKPVVVCGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERERFSQLLAA 191
Query: 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
G ID+YR L+ EK +S+ N G RIDYF+VS+ + RI ++ +
Sbjct: 192 G-FIDSYRSLYPEKIEYSWWSYRFNARKNNAG--WRIDYFLVSDRIGGRIQDAKIHTQVM 248
Query: 333 ELEGFYGSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 249 ------GSDHCPVELDL 259
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 144/308 (46%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ + GFT ER+ F +L +G +D +
Sbjct: 143 GDLNVAHHEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG-FMDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +K+ D WS + R RIDYF+ S+ L D I ++ L +G
Sbjct: 187 RHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFG 239
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 240 SDHCPVEL 247
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F L+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F N+ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACVRKG---FLNYFEEVDADIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A+ K Y+GTA+ K +P V + L +
Sbjct: 45 -------------LNLPGYHQY---WNYAEKKGYSGTAVFTKD--KPLDVKYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EFE FYL+N Y PN+ + E R W+ + ++ + S KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYLVNVYTPNS--QRELTRLDYRMTWEDEFRNYLKELDSIKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P N+ + GFT ER + +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP------------STNRRN---AGFTDEERGKMTELLGTG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ D WS + R RIDYFIVSE KDR+ ++ G
Sbjct: 187 RYFYPDKE-DAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIHSE------IMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVMLEI 249
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F L+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L ++ F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGLRACLQKG---FMDYFKAIDADIFCIQETKL------------QENQKD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K ++P VS+ +
Sbjct: 45 -------------IEGLDLNGYYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--H 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E++ F+L+N Y PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYKKFFLVNAYTPNS--QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P AA + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K D WS + + R+DYFIVSE LKD +I ++ + G
Sbjct: 190 RYFYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------G 242
Query: 340 SDHCPVSLELSE 351
SDHCPV L + E
Sbjct: 243 SDHCPVVLIVKE 254
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDRKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + K P Q+L P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSEKKLPAELQDL---------------------PGLSHQYWLA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLDYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPDTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLLLA 317
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE ++ A +++ D
Sbjct: 1 MKLISWNVNGIRACVQKG---FCDFFKEVDADIFCIQESKLQAG----------QIELD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +W+ A+ K Y+GTA+ KK +P +V++ + +
Sbjct: 47 ------------------FEGYYQYWNYAEKKGYSGTAIFTKK--EPLQVTYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R +W+ + F+ + KP++ C
Sbjct: 85 HDKEGRVITLEFEDFYMVTVYTPNS--QNELARLSYRMEWEDEFRRFLKKLEETKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P ++N GFTI ER +F +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNPN---TNQMNA------------GFTIEERTKFSELLEAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + + MD WS + + RIDYF+ S+ L+ ++++ ++ + G
Sbjct: 187 RYFYPDA-MDMYSWWSYRFKAREKNTGWRIDYFLASQGLESKLVSAKIHSQIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCP+ LE+
Sbjct: 240 SDHCPIELEI 249
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKFISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V + L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVMYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F +L+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ E+ + +SW +G R K + R+DYF++SE LK +I ++
Sbjct: 188 RYLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE------V 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L +
Sbjct: 239 TGSDHCPVELRMG 251
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 167/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 29 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 80
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 81 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 116
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 117 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 172
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 173 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 223
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT E + FG +L+ L D++R L+ F W+ + +
Sbjct: 224 -----NKKN---AGFTPQEAQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 274
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 275 NVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 315
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 140/310 (45%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MRFVSWNVNGL--RACVNKGAFLPYFESADADVFCIQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIELPIGEAYQQFWNYAERKGYSGTAVFTR--ITPLDVRYGFGDGN-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GR+I EF +FY++ Y PN K + + R +W+ ++ KP+I C
Sbjct: 87 -DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFCAYLCALDREKPVIAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ + K + G GFT ER + +L G +D +
Sbjct: 144 GDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLAAG-FVDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R LH D WS P + R RIDYF+VSE L+DRI+ + H + G
Sbjct: 188 RALHPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVL------G 240
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 241 SDHCPVVLEV 250
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 151/311 (48%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KFV+WN N L + F T D D+ LQE +M P D P+
Sbjct: 1 MKFVSWNVNGLRACMNKG---FMETFQTLDADIFCLQETKMQPHQLELDLPR-------- 49
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A+ K Y+GTA+ K +P VS+ L
Sbjct: 50 ----------------------YKQYWNSAEKKGYSGTAIFTK--VEPLNVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EF+ F+++ Y PN+ K E R +W+ + ++++ + KP++
Sbjct: 84 EHDHEGRVITLEFDKFFMVCVYTPNS--KRELERLDYRMQWEDAFRNYLVELNKQKPVVM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER + +L+ G +D
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRRSAGFTDEERSKMTELLQAG-FVDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+L+ +K + WS + RIDYFIVS+++++ I + GI E F+
Sbjct: 186 FRYLYPDKTSIYSW-WSYMRKARENNAGWRIDYFIVSKDIEENI-----KEAGIHNE-FF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPVSLEL
Sbjct: 239 GSDHCPVSLEL 249
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 147/320 (45%), Gaps = 63/320 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L R N F + + D DV +QE ++ A
Sbjct: 1 MKFVSWNVNGL--RACVNKGAFLPYFESVDADVFCVQETKLQAG---------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ P + YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 43 ------------QIQLPIGEAYQQFWNYAERKGYSGTAVFTR--MPPLDVRYGFGNGV-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I C
Sbjct: 87 -DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER + +L G +D +
Sbjct: 144 GDLNVAHQEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ + D WS P + R RIDYF+VSE L+D I+ + H + G
Sbjct: 188 RALYPDV-TDKYTWWSNMPRVRERNIGWRIDYFLVSERLRDCILDARIDDHVL------G 240
Query: 340 SDHCPVSLELS-EASSDSEK 358
SDHCPV LE++ EA DS K
Sbjct: 241 SDHCPVVLEMALEAWKDSGK 260
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K +++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F L+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREQFTRTLEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 145/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P K + GFT ER +FG +L G +D
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVD 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 185 TFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------I 237
Query: 338 YGSDHCPVSLELS 350
+GSDHCPVSL LS
Sbjct: 238 FGSDHCPVSLTLS 250
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 144/308 (46%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F+ D D +QE +M K
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAEIFQKLDADFFCIQETKMQEGQLK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y ++ A+ K Y+GTA+ K +P VS+ ++ A +
Sbjct: 45 -------------LDLPGYRQY---FNYAERKGYSGTAIFAKD--EPLTVSYGIQ--APE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S KP+I C
Sbjct: 85 FDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ + GFT ER+ F +L +G +D +
Sbjct: 143 GDLNVAHYEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG-FMDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +K+ D WS + R RIDYF+ S+ L D I ++ L +G
Sbjct: 187 RHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------LTDIFG 239
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 240 SDHCPVEL 247
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 145/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRSFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P K + GFT ER +FG +L G +D
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVD 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 185 TFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------V 237
Query: 338 YGSDHCPVSLELS 350
+GSDHCPVSL LS
Sbjct: 238 FGSDHCPVSLTLS 250
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F ++ D D+ LQE ++
Sbjct: 1 MKFISWNVNGLRAAVKKG---FMDYFNEADADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A K Y+GTA+ KK +P +V + L + +
Sbjct: 39 ---QEGQIEL-------DLNGYYDYWNYAVKKGYSGTAIFTKK--EPLRVFYGL--SVAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +++ +V KP+I+C
Sbjct: 85 HDQEGRVITLEFEQFYFITVYTPNS--QPELARLAYRMSFEEAFLNYVKNLDQEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER +F +L+ G +D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNPGFSDEERGKFTTVLESG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + EK+ + WS + R RIDYF+VS L+D++I ++ + G
Sbjct: 187 RHFYPEKEGAYSW-WSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIHADVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 240 SDHCPVELTI 249
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F +F D D+ LQE ++ P+
Sbjct: 1 MKFISWNVNGLRACVTKG---FMDFFNEVDADIFCLQETKLQEGQIDLNPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ AD K Y+GTA+ KK +P V++ + +
Sbjct: 50 ---------------------YESYWNYADKKGYSGTAIFTKK--KPLSVAYGI--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ + ++ S KP++ C
Sbjct: 85 HDHEGRVITLEFEDFYFVTVYTPNS--QTELKRLEYRMRWEDDFRAYLKNLDSKKPVVMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKFTEFLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D + +S WS + RIDYF SE +KDR+++ ++ +
Sbjct: 187 RYFY--PDAEGMYSWWSYRFNARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 239 GSDHCPVELVI 249
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEASNADIFCLQEIKLQS-GQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R L+ D + +SW +G R K + R+DYF+VS+ +K +I ++ I
Sbjct: 188 RHLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
RFL+ D + +SW +G R K + R+DYF+ SE LK +I ++ +
Sbjct: 188 RFLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHI 250
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEEYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ + + +SW +G + + R+DYF+VSE +KD+I ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYRMGARVKNIGWRLDYFVVSERMKDQITEAKINSEVM------ 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELHIN 251
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 149/316 (47%), Gaps = 58/316 (18%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ ++ +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GI--GIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLN 242
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L+
Sbjct: 243 ATKPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLE 287
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
+G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I
Sbjct: 288 KG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTS 345
Query: 332 IELEGFYGSDHCPVSL 347
+ GSDHCP+ +
Sbjct: 346 V-----MGSDHCPIGV 356
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNTDIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
RFL+ D + +SW +G R K + R+DYF+ SE LK +I ++ +
Sbjct: 188 RFLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHI 250
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 145/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + K +S + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR----VKPLSVARGIGIPQH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 217
+ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP++
Sbjct: 86 DNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKPVV 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P K + GFT ER +FG +L G +D
Sbjct: 141 VCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVD 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 185 TFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD------V 237
Query: 338 YGSDHCPVSLELS 350
+GSDHCPVSL LS
Sbjct: 238 FGSDHCPVSLTLS 250
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D DV LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++F +L G ID Y
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + RIDYF S++L+DR+++ ++ + G
Sbjct: 187 RYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVELEI 249
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 120 EKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 171
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 172 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 207
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 208 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 262
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 263 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 311
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 312 --NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 365
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 366 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 403
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKESAGEGPVLYEDPPDQKTSPSG-----KAATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 57/317 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + + SK P
Sbjct: 58 SGKSSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK--CSESKLPP---- 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL+D P YQ W S +D + Y+G LL ++C P V++ +
Sbjct: 109 ELQD------------------LPGLTYQYWSSPSDKEGYSGVGLLSRQC--PLSVTYGI 148
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ S K
Sbjct: 149 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAK 204
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 205 KPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAV 249
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
L D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 250 PLTDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQALLPALCDSKIRSKAL- 307
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 308 -----GSDHCPITLLLA 319
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 278
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 150/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+EG ID Y
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF++SE LK +I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHI 250
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 33 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 278
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 3 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 54
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 55 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 90
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 91 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 145
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 146 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 193
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 194 -GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 248
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 249 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 286
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 149/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + + EF + I D D +QE + A
Sbjct: 1 MKFISWNVNGIRACLGKGFLEFFHQI---DADFFCIQETKCQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+++L + Y+ +W+ A K Y+GTA+ K P V + + A
Sbjct: 42 ------QVVL-------SIEGYEQYWNYAQKKGYSGTAIFTKH--TPLSVKYGV--GAED 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
+ +GR+I E++ FYL+N Y PN + + R +W+ R+ ++ L C KP+++
Sbjct: 85 SQDEGRIITLEYKNFYLVNVYTPNA--QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ + K + G GFT ER +F A+L+ G +D+
Sbjct: 142 CGDLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSALLESG-FVDS 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ H E + D WS + R RIDYF+VS +LK++I + + H
Sbjct: 186 FRYKHPE-ETDHYTWWSYMNKVRERNIGWRIDYFVVSNQLKEQIESATIHPH------IM 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 239 GSDHCPIELQL 249
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE++ A + P
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEIK---ATEDNVP---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + +Y +W+ A K YAGTAL K +P V F + + K
Sbjct: 47 -------------MEVRYYPDYHKYWNPAKKKGYAGTALFTK--IEPLNVKFGIGED--K 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I C
Sbjct: 90 FDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+EID+++P K++ GFT ER L++G ID +
Sbjct: 148 GDFNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDKFLQDG-YIDTF 191
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R KE W+ + R R+DYF+VSEELKD++ + + L YG
Sbjct: 192 RMFTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYG 243
Query: 340 SDHCPVSLEL 349
SDH P+++ L
Sbjct: 244 SDHAPIAMVL 253
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 152/310 (49%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F +F+ + PD++ALQE+
Sbjct: 3 LLLISWNVNGIRACVRNG---FLDFLEKYKPDILALQEI--------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA+ + I +R + +Y +W+ A K YAGTAL K +P + F + + K
Sbjct: 39 KATEDNIPIEVRY-----YPDYHKYWNPAKKKGYAGTALFTK--IEPLNIKFGIGED--K 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I C
Sbjct: 90 FDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+EID+++P K++ GFT ER L++G ID +
Sbjct: 148 GDFNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDEFLQDG-YIDTF 191
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R KE W+ + R R+DYF+VSEELKD++ + + L YG
Sbjct: 192 RMFTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYG 243
Query: 340 SDHCPVSLEL 349
SDH P+++ L
Sbjct: 244 SDHAPIAMVL 253
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 147/309 (47%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++
Sbjct: 3 KLVSWNVNGLRSCIGKG---FWDFFKEVDADIFCVQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E +L L + Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 40 --QEGQLEL-------EIEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EFE F+L+N Y PN+ K E + R KW+ +E++ Q KP+I CG
Sbjct: 87 DNEGRVITLEFEEFFLVNVYTPNS--KRELERLEYRMKWEDDFREYLKQLEQTKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +P NK GFT+ ER++F +L+ G +D +R
Sbjct: 145 DMNVAHQEIDLKNPR------------SNKR---SAGFTMEEREKFSQLLEHG-FVDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +K + WS + + RIDYF VS LKDRI A E+ + GS
Sbjct: 189 MLYPDKTGAYTW-WSYMFKSREKNAGWRIDYFCVSGALKDRIEAAEIYSDTM------GS 241
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 242 DHCPVGLTI 250
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 57/317 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 59 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 112
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 113 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 149
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K
Sbjct: 150 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAK 205
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 206 KPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAV 250
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
L D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 251 PLTDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL- 308
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 309 -----GSDHCPITLLLA 320
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 147/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N + V+ F +F D +QE ++
Sbjct: 1 MHFISWNVNGIRACVRKG---FLDFFQEMGADFFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A+ K Y+GTA+ K ++P V + ++
Sbjct: 39 ---QEGQIQL-------DLDGYYQYWNYAERKGYSGTAIFTK--WEPLHVFYGIDSN--N 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
YEP+GR+I E+E+FYL+N Y PN+ K + + R +W+ R+ +++ + + KPL++C
Sbjct: 85 YEPEGRIITLEYESFYLVNVYTPNS--KRDLTRLEDRLEWEDRLFDYLQKLNKKKPLVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + +K + G GFT ER + +L G +D
Sbjct: 143 GDLNVAHHEIDLRN---------------DKTNHGNSGFTKEERSKMSRLLDAG-FVDTL 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R H E D D WS + R RIDYFIVSE+L + E+ + G
Sbjct: 187 RHFHPEAD-DIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVL------G 239
Query: 340 SDHCPVSLELSE 351
SDHCP+ L + E
Sbjct: 240 SDHCPIGLVIDE 251
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEVAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLPHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 57/317 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 58 SGKPSTLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSESKLPSELQ 111
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+L P YQ W S D + Y+G LL ++C P V+F +
Sbjct: 112 DL---------------------PGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGI 148
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 214
+ +++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K
Sbjct: 149 GEE--EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAK 204
Query: 215 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
PL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 205 KPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAV 249
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
L D++R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 250 PLTDSFRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL- 307
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 308 -----GSDHCPITLLLA 319
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 146/310 (47%), Gaps = 60/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ PD++ LQE T
Sbjct: 1 MKLTTWNVNGI--RSVLNKGALQEYVLEAQPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E+ + M F Y +W+ A K Y+GTA+ K+ +P V + L +
Sbjct: 38 KAQPEQVDLGME------FAGYHAYWNSAVKKGYSGTAIFTKE--EPISVQYGL--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ +YL+ Y PN K + R+ W+ F+ + KP+I+C
Sbjct: 88 HDQEGRVITAEYADYYLVTVYTPNA--KRDLTRLSYRQVWEDDFLAFIKKLEETKPVIFC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P K + GFT ER++F I++ G L+DA+
Sbjct: 146 GDLNVAHKEIDLANP---------------KTNTKNAGFTKEEREKFDQIVENG-LVDAF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
RF + E + WS + R RIDYF+VSE L RI +++ G
Sbjct: 190 RFRYPEA-VGAYTWWSYMGGARARNIGWRIDYFVVSEVLTSRIQEVKIRAD------VTG 242
Query: 340 SDHCPVSLEL 349
SDHCPV +E+
Sbjct: 243 SDHCPVEMEI 252
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 143/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + F +F D D+ +QE +M + D P HQ
Sbjct: 1 MKFISWNVNGIRACAGKG---FMDFFQETDADIFCIQETKMQEGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAKKKGYSGTAIFTKQ--EPISVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R KW++ ++ + KP+I+
Sbjct: 84 EHDQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMKWEEDFLTYLKKLEETKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GFT ER++F +L G +D
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERQKFTELLNAG-FVDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + E+ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPEQTGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLEDAKI------LTDIM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 166/345 (48%), Gaps = 64/345 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ +WS
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQ-YWS 120
Query: 129 LADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186
K Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 APXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG 176
Query: 187 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 --RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 225
Query: 246 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 305
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 ---NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNV 278
Query: 306 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 63/314 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F T + D+ +QE ++ A EL
Sbjct: 1 MKLISWNVNGFRSCLTKG---FLDFFNTVEADIFCIQESKLSAG--------QIELS--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +++ A+ K Y+GTA+ KK QP SF +
Sbjct: 47 ------------------LEGYTQYFNYAERKGYSGTAVFTKK--QPLTCSFGMGIPL-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I E++ FYL+N YAPN+ + E + R W++ + +V S KP+I+C
Sbjct: 85 HDKEGRMITLEYDEFYLINLYAPNS--QAELARLEYRLTWEEDFRRYVQTLNSHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ N+ + GFT ER +F +L+ G ID +
Sbjct: 143 GDLNVAHQEIDLKNPQ------------ANRRN---AGFTDEERLKFSELLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E+ D WS + R RIDYF +SE LKD + + E+ + G
Sbjct: 187 RYLYPEQK-DSYSWWSYRFNARVRNAGWRIDYFCMSERLKDSLQSAEIYTSVL------G 239
Query: 340 SDHCPVSLELSEAS 353
SDHCPV +E++ S
Sbjct: 240 SDHCPVGIEVNSFS 253
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 1 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++F +L G ID Y
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + RIDYF S++L+DR+++ ++ + G
Sbjct: 187 RYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVELEI 249
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F +F D D+ LQE ++ +
Sbjct: 6 MKFISWNVNGIRACVGKG---FLDFFKEVDADIFCLQETKLQEGQIE------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 50 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 89
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 90 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 147
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++F +L G ID Y
Sbjct: 148 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTY 191
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + RIDYF S++L+DR+++ ++ + G
Sbjct: 192 RYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------G 244
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 245 SDHCPVELEI 254
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEEAGEGPALYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL + + +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELSELS---------------------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PIKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNAAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 150/309 (48%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N + +K F + + PD A+QE +M +
Sbjct: 3 KFISWNVNGIRACIKKG---FLDVLEGESPDYFAVQETKM-------------------Q 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+EE L Y +W A K Y+GT +L K+ + VS S ++
Sbjct: 41 EGQEEILT----------NGYHQYWDSAKRKGYSGTLVLSKE----EAVSTSKGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRV+ A+F+ FYL+N Y PN+ K E R+ W+ +++V++ + KP+I CG
Sbjct: 87 DEEGRVVTADFKDFYLVNVYVPNS--KPELARLDYRQHWEDDFRDYVVKLNKEKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + PGFT ER++F +L+ G D +R
Sbjct: 145 DLNVAHTEIDLKNP---------------KTNRRNPGFTDEEREKFTELLEAG-FTDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K+ + WS + RIDYF+VS ++KD+I ++ L YGS
Sbjct: 189 YKYPDKEGAYTW-WSYRFNARKNNAGWRIDYFLVSNDVKDKIEDAKI------LSDVYGS 241
Query: 341 DHCPVSLEL 349
DHCPV LEL
Sbjct: 242 DHCPVVLEL 250
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 155/313 (49%), Gaps = 68/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVTADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VSF ++K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSFGVDK---E 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 84 LEDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + ++W + + K R + + RIDYFIVSE +KD I + H +
Sbjct: 186 RYLYPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERIKDVIQEAAIHPHVM----- 237
Query: 338 YGSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 238 -GSDHCPVMLELN 249
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFMKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R L+ + + +SW +G R K + R+DYF+VSE +K +I ++
Sbjct: 188 RHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 63/319 (19%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
++N ++ +KF++WN N + V F ++ D D+ LQE ++
Sbjct: 32 QKNRRRIGMKFISWNVNGIRACVNKG---FLDYFHAADADIFCLQETKL----------- 77
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P VS+
Sbjct: 78 -----------QEGQLAL-------DLEGYFQYWNYAEKKGYSGTAVFTKE--EPLSVSY 117
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
L A ++ +GRVI E+ETFY + Y PN+ + E R +W+ + ++
Sbjct: 118 GLGIEA--HDQEGRVITLEYETFYFVTVYTPNS--QSELKRLDYRMEWEDDFRAYLTGLD 173
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I CGD+NV+H+EID+ +P+ N+++ GFT ER++F +L
Sbjct: 174 REKPVIVCGDMNVAHQEIDLKNPK------------TNRKN---AGFTDEERQKFTELLD 218
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
G ID +R+ + +++ + WS + + RIDYF+VS+ LKDR+ ++
Sbjct: 219 SG-WIDTWRYFYPDQEGVYSW-WSYRFKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEV 276
Query: 332 IELEGFYGSDHCPVSLELS 350
+ GSDHCPV L+L+
Sbjct: 277 M------GSDHCPVELDLN 289
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 143/316 (45%), Gaps = 63/316 (19%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K P +FV+WN N L +K P F +T + D+ A+QE ++ A G D
Sbjct: 2 SQKHPYRFVSWNVNGLRATLKKE-PSFLEIFSTLNADIFAIQETKLQA-GQVDLD----- 54
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
Y WS A+ K Y+GTA+ ++ +P ++
Sbjct: 55 -----------------------LDGYTQTWSYAERKGYSGTAVFSRE--KPLSTIHTIG 89
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
A E GRV EFE F+ ++ Y PN+ K E R +WDK +EF++ K
Sbjct: 90 CKAADNE--GRVCALEFEKFWFVDVYTPNS--KNELARLDERMEWDKAYREFLVGLDAQK 145
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I CGD NV+H+EID+ +P N E+ GF+ ER F ++L G
Sbjct: 146 PVITCGDFNVAHQEIDLKNP------------ASNHEN---AGFSDEERAGFSSLLGAG- 189
Query: 275 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
D +R H ++ +S WS + R RIDYF+VS + + + + +
Sbjct: 190 FTDTFRSAHPT--LEGAYSWWSYRMRSRERNAGWRIDYFLVSNRIANTVTSSAIYNE--- 244
Query: 334 LEGFYGSDHCPVSLEL 349
YGSDHCPV LEL
Sbjct: 245 ---IYGSDHCPVGLEL 257
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 153/314 (48%), Gaps = 72/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + EF N + D+ A+QE T
Sbjct: 1 MKLVSWNVNGLRACMKKGFKEFFN---EMNADLFAIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K E+K F+ Y +W+ AD K Y+GT + K+ +P V + ++ + K
Sbjct: 37 KMQEEQKTF--------DFEGYHEFWNCADKKGYSGTLIYSKQ--KPLNVVYGIDGS--K 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
Y +GR+I EF+ F+ + Y PN+ + R +++ + ++ + S KP+I C
Sbjct: 85 YNDEGRIITLEFKNFFFVTAYVPNS--QRSLARLDYRMEFEDDFRAYLKKLDSLKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+++P K + GFTI ER+++ ++L EG D+Y
Sbjct: 143 GDLNVAHREIDLTNP---------------KNNEKNAGFTIEERRKYQSLLDEG-FTDSY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIELE 335
R+LH EK +S+ N + R RIDYF++S +L+ D II + +
Sbjct: 187 RYLHPEKVEYSWWSYMFN--ARKRNIGWRIDYFVISNKLRGQLNDSIIHTQTE------- 237
Query: 336 GFYGSDHCPVSLEL 349
GSDHCP+SL++
Sbjct: 238 ---GSDHCPISLDI 248
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 146/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L F++ D D LQE +M A G D
Sbjct: 2 LKLISWNVNGLRACYDKG---FTDIFRQLDADFFCLQETKMQA-GQLDLQ---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ + QP VS+ +++T +
Sbjct: 48 ------------------FDGYQSYWNYAEKKGYSGTAVFTR--LQPISVSYGMDRT--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I E E F+L+N Y PN+ +E + R W+ F+ Q + KP+I C
Sbjct: 86 HDREGRIITLEMEDFFLVNVYTPNS--QEGLKRLEYRMTWEDDFLHFLKQLKTQKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G D +
Sbjct: 144 GDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERYKFTQLLSAG-FTDTF 187
Query: 280 RFLH-KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + +KD+ +S WS + + RIDYF+ S L +++ + ++
Sbjct: 188 RYFYPNQKDI---YSWWSYRFKAREKNAGWRIDYFLASASLNEKLCSAKIHTE------I 238
Query: 338 YGSDHCPVSLEL 349
+GSDHCPV LE+
Sbjct: 239 FGSDHCPVELEI 250
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN + FS+++ +PD++ LQE ++
Sbjct: 1 LKVISWNVAGFRSVLTKG---FSDYVVKENPDILCLQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K + +K SS P Y+ + AD + + GT LL K +P + F + K
Sbjct: 39 KPTEVQK-------SSIP-SGYEYHFVSADQAGHHGTGLLTK--LKPLSLKFGI--GIAK 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE++ FYL+NTY PN+G + +N R ++WD Q+++++ KP++WC
Sbjct: 87 HDTEGRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDFQKYLVELDKKKPVVWC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFTI ER FG L +G ID+Y
Sbjct: 147 GDLNVAHTEIDLKNP---------------KTNTKSAGFTIQERTSFGDFLNKG-FIDSY 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R + K+ F W+ +G R K + R+DYF+VS+ D I ++
Sbjct: 191 RHYNPGKEGAFTF-WT--YMGGARAKNVGWRLDYFVVSKRYIDSIKTPFIR------STV 241
Query: 338 YGSDHCPV 345
GSDHCP+
Sbjct: 242 MGSDHCPI 249
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +G
Sbjct: 188 ALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 153/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ Q+ + D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL------------QDGQIDL 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 47 N-----------------LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F +L+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 188 RYLY--PDQKGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHVN 251
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VS+ ++K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVDKES-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 85 -EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLNKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + R RIDYFIVSE +KD I + H + G
Sbjct: 186 RYLYPNQE-EAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEATIHPHVM------G 238
Query: 340 SDHCPVSLELS 350
SDHCPV LEL+
Sbjct: 239 SDHCPVMLELN 249
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 74/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAG-SKDAPKNHQEL 97
+K ++WN N L VK +F+TTF + DV ++QE +M A D P HQ
Sbjct: 1 MKLISWNVNGLRAVVK------KDFVTTFQQLNADVFSIQETKMQAGQLDLDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
++ A K Y+GTA+ K K +E+
Sbjct: 53 ----------------------------YFFYAKKKGYSGTAVFSKAEPISVKQGLGIEE 84
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
++ +GR I EF +YL+N+Y PN+ K + + R ++D ++E++LQ S KP
Sbjct: 85 ----FDDEGRTITLEFPDYYLINSYTPNSQPKLKRVDY--RMRYDDVLREYMLQLSADKP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I CGDLNV+HEEID+ +P K + PGF+ ER +F +L G
Sbjct: 139 VILCGDLNVAHEEIDLKNP---------------KTNHKNPGFSDQERDKFSELLDSG-F 182
Query: 276 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
ID++R LH + + +S WS + RIDYF+VS+ + I ++ L
Sbjct: 183 IDSFRSLHPQ---EIKYSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADI------L 233
Query: 335 EGFYGSDHCPVSLELS 350
YGSDHCP+ L+L+
Sbjct: 234 TDIYGSDHCPIELDLN 249
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 146/309 (47%), Gaps = 57/309 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F +I PD+IA+QEV+ +D
Sbjct: 1 MKFISWNVNWIRASIKK---WFIEYIQDEKPDIIAMQEVKAT--------------EDQF 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A E +L+ + FKN+ Y+ TA+ K+ +P +V++ L ++
Sbjct: 44 PARLEMELMWYSIYWNAAFKNW----------YSWTAIFTKE--KPLEVTYWL--WIWEH 89
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ + R+I EFE FY + Y PN+ K E N + R+ WD +++ + KP++ C
Sbjct: 90 DNEWRIITLEFEKFYFITVYTPNS--KRELNRLEYRQLWDSLFLDYMRRLEVNKPVVVCW 147
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P+ PN+ GFT ER+ F L G ID +R
Sbjct: 148 DLNVAHKEIDLKNPK------------PNR---WNAGFTDEEREGFQKFLNAG-FIDTFR 191
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + EK + WS + R RIDYF+ S LKD + ++ GS
Sbjct: 192 YFYPEKTEAYSW-WSNFAFARDRNIGWRIDYFLTSWGLKDNL------KDAFIMDQILGS 244
Query: 341 DHCPVSLEL 349
DHCPV LE+
Sbjct: 245 DHCPVWLEI 253
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 151/310 (48%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F + D+ LQE ++ + EL+ D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDFFHEQNADIFCLQETKLQ--------EGQIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ K+ +P V + + + L+
Sbjct: 49 --------------------GYHQFWNYALKKGYSGTAVFTKQ--KPISVRYGVGE--LE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
E +GR+I EF++FYL+N Y N K + + R +W+ ++E++L KP+++C
Sbjct: 85 SEDEGRIITLEFDSFYLVNVYTINA--KRDLSRLPERLEWEDALKEYLLDLDRHKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H E+D+ + + + G GFT+ ER + +L+ G ID++
Sbjct: 143 GDLNVAHAEVDLKNA---------------RSNHGNSGFTLEERGKMTTLLESG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E+ D WS + R RIDYFIVS +LK++I + + G
Sbjct: 187 RYLYPER-TDAFTWWSYMRDVRARNIGWRIDYFIVSTQLKEKINEASIYAEVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCP+ LEL
Sbjct: 240 SDHCPIGLEL 249
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M
Sbjct: 1 MKFISWNVNGLRACVG---KDFENQFKELDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ K +P VS+ + +
Sbjct: 39 ---QEGQLDLQ-------FEGYESYWNYAEKKGYSGTAIYTKH--KPLNVSYGM--GVEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E++ FYL+ Y PN+ + E R W+ ++F+ K P+I C
Sbjct: 85 HDHEGRIITLEYDQFYLVTCYTPNS--QTELKRLDYRMTWEDDFRKFLKSLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER++ +L +G D++
Sbjct: 143 GDLNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLNDG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+LH + + +S WS + + RIDYF+VS+ +K++I ++ +
Sbjct: 187 RYLHPD---EVTYSWWSYRFKAREKNAGWRIDYFLVSDRIKEQITEAKIHTEIM------ 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV ++L+
Sbjct: 238 GSDHCPVEVDLT 249
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 156/317 (49%), Gaps = 65/317 (20%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
+K K +WN N L +KNN +F++ DPDV +QE + A D PK
Sbjct: 1 RKSNFKITSWNVNGLRAWLKNN---SKSFVSKEDPDVFCIQETKCALA---DIPK----- 49
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
E KL Y +W+ A+ K Y+G L KK +P KVS+ +
Sbjct: 50 --------EAKL-----------AGYHCYWNSAEQKGYSGVGLCSKK--EPIKVSYGMGN 88
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
+++ +GRVI AE+E F+L+ +Y PN+G + R++W+K ++ + KP
Sbjct: 89 K--EHDKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKP 144
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I CGDLNV+H++ID+++P K + GFT ER F +L EG
Sbjct: 145 VILCGDLNVAHKDIDLANP---------------KTNTRTAGFTKEERADFTTLLGEG-F 188
Query: 276 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIE 333
D +R L+ +K F WS +G R K + R+DYF+VS+ L ++ C+ I
Sbjct: 189 KDTFRELYPDKKSAYTF-WS--YMGGARAKNVGWRLDYFVVSDRLVPKV--CD----SII 239
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP+SL LS
Sbjct: 240 RSRVMGSDHCPLSLLLS 256
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+++C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R L+ + + +SW +G R K + R+DYF+VSE +K +I ++
Sbjct: 188 RHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 145/319 (45%), Gaps = 67/319 (21%)
Query: 35 ENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E K +KF++WN N L R K F D D LQE ++
Sbjct: 11 ETHKNSMMKFISWNVNGLRACREKG----FEESFAQLDADCFCLQETKL----------- 55
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
QE + D F Y+ +W+ A+ K Y+GT + + +P V +
Sbjct: 56 -QEGQIDI-----------------AFDGYESYWNYAEKKGYSGTCIFTR--IKPLSVRY 95
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
L +++ +GRVI EFE YLL Y PN+ ++ R WD + +V Q
Sbjct: 96 GL--GIEEHDHEGRVITLEFEDLYLLTVYTPNS--QDGLRRLDYRMTWDDDFRAYVQQLD 151
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ CGDLNV+H+EID+ +P K + GFT ER++F +L+
Sbjct: 152 AHKPVVICGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERQKFSQLLE 196
Query: 272 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
G D YRF + D+ +S WS + + RIDYF+ S+ L DR+++ ++
Sbjct: 197 AG-FTDTYRFFN--PDLTDSYSWWSYRFKAREKNAGWRIDYFVTSQSLNDRLVSADIH-- 251
Query: 331 GIELEGFYGSDHCPVSLEL 349
+ +GSDHCPV L +
Sbjct: 252 ----QEIFGSDHCPVELVI 266
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N +K F + D D LQE +M + P+ + E
Sbjct: 1 MKFISWNVNGFRAVLKKG---FEDVFKDLDADFFCLQETKMQEGQADFHPEGYHE----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++S AD K Y+GTA+ K+ P +V++ +E K
Sbjct: 53 ------------------------YYSYADKKGYSGTAIFAKEA--PLRVAYGIEG---K 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GRVI E++ FYL+ Y PN+ ++E R +++ ++ ++ + KP+++C
Sbjct: 84 HNDEGRVITLEYDDFYLICAYVPNS--QDELKRIDYRMEYEDDLRAYMSKLDKVKPVVYC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + G GF+ ER + +L G D Y
Sbjct: 142 GDLNVAHEEIDLKNP---------------KSNRGNAGFSDEERSKMTELLGAG-FTDTY 185
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R LH D +S WS + RIDYFIVS L+ +I + L Y
Sbjct: 186 RHLH--PDTPGVYSWWSYRFNARANNAGWRIDYFIVSNRLETKIKEAAI------LTDVY 237
Query: 339 GSDHCPVSLEL 349
GSDHCPVSL L
Sbjct: 238 GSDHCPVSLVL 248
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P Q+L P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPTELQDL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDKFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLTSQKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARAKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 151/311 (48%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F F+ D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDFNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ + +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTRH--KPLSVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E + R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE L+DR++ ++ +
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLVDAKIHTEIM------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ ++L
Sbjct: 238 GSDHCPIEIDL 248
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F FD D LQE+++ QE + D
Sbjct: 1 MKFVSWNVNGLRAAREKG---FDEIFKNFDADFFCLQEIKL------------QEGQIDM 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ + +P V + L K +
Sbjct: 46 DMD-----------------GYYSYWNYAKRKGYSGTAIFTR--IEPIDVFYGLGKE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E+ FY+ Y PN+ K+E R++W+ +EF K P+I C
Sbjct: 85 HDDEGRLITLEYPEFYVSTVYTPNS--KQELLRLDYRQEWEDEFREFFKNLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + PGFT ER++F +L G D +
Sbjct: 143 GDMNVAHKEIDLKNP---------------KTNRKNPGFTDEEREKFTLLLDAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + + WS + RIDYF+VS+ L++++ A + + +G
Sbjct: 187 RYFYPDKENEYSW-WSYRFNARKNNTGWRIDYFLVSDRLQEKLTAASIH------QDVFG 239
Query: 340 SDHCPVSLELS 350
SDHCPVS+ELS
Sbjct: 240 SDHCPVSVELS 250
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 152/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ +G D
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKL-QSGQIDLD---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYALKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+++C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++ +L+EG ID Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKITRVLEEG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ E+ + +SW +G R K + R+DYFI+SE LK +I+ ++ +
Sbjct: 188 RYLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFIISERLKHKILDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHM 250
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 150/312 (48%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID Y
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF++SE L+ +II ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLEHKIIDAKINSEVM----- 239
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 -GSDHCPVELHI 250
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A P+
Sbjct: 2 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +++ A+ K Y+GTA+ + +P V++ +++ +
Sbjct: 51 ---------------------YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
+ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ C
Sbjct: 86 HNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P +A + N PGF+ ER++F +L G ID++
Sbjct: 144 GDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R LH +D WS + R RIDYF+VSE L++ I A ++ L+ G
Sbjct: 188 RELHPNA-IDRYSWWSYRANARSRNTGWRIDYFVVSERLRNAIEAADI------LDQVLG 240
Query: 340 SDHCPVSLELS 350
SDHCPV ++L+
Sbjct: 241 SDHCPVMIKLN 251
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ ++ K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSA-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + SDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------ASDHCPITLYLA 317
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ +G D
Sbjct: 1 MKLISWNVNGLRAVITKG--GFLEYLEESNADIFCLQEIKL-QSGQIDLN---------- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 48 ------------------LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F IL+EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG-FVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R L+ + + +SW +G R K + R+DYF+VS+ +K +I ++ I
Sbjct: 188 RHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + AL D +T+ + K LK +WN + L +K + +
Sbjct: 31 KKTEKEAAGEGAALYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 82
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE TK S + ++ LS P +Q
Sbjct: 83 WVKEEAPDILCLQE---------------------TKCSENKLPPELQELSGLP---HQY 118
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN
Sbjct: 119 WSAPSDKEGYSGVGLLSRQC--PIKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTVYVPN 174
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 175 AG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------- 225
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 276
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 277 NVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 146/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
LK V+WN N L ++ + P F + D DV A+QE ++ + D P Q
Sbjct: 11 LKLVSWNVNGLRAVMRKD-PSFLQIFSQLDADVFAIQETKLQEGQVELDLPGYFQT---- 65
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
W+ A+ K Y+GTA+ ++ P +V +
Sbjct: 66 --------------------------WNFAERKGYSGTAVFSRE--DPLRVIRQIGSDVA 97
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
E GRV EF TF+ ++ Y PN+ K+ + R WD+R + F+L+ KP++
Sbjct: 98 DDE--GRVCALEFPTFWFVDVYTPNS--KQGLARIEERMGWDERFRLFLLELDAHKPIVT 153
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD NV+H+EID+ +P N E+ PGF+ AER FG +L G D
Sbjct: 154 CGDFNVAHQEIDLRNPS------------TNHEN---PGFSDAERDSFGRLLDAG-FTDT 197
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ D++ +S WS + R RIDYF+ SE + DRI +G I E F
Sbjct: 198 FRSLN--PDLEGAYSWWSYRMRARERNVGWRIDYFLTSERVADRI-----EGASIHDEVF 250
Query: 338 YGSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 251 -GSDHCPIELQI 261
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID Y
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF++SE LK +I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N + F +F D DV LQE ++ +
Sbjct: 1 MRFISWNVNGIRACAGKG---FLDFFKEVDADVFCLQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P KV + + +
Sbjct: 45 -------------LDLPGYFQY---WNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++F +L G ID Y
Sbjct: 143 GDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + RIDYF S++L+DR+I+ ++ + G
Sbjct: 187 RYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVELEI 249
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 148/312 (47%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VKN F +F T + DV +QE ++
Sbjct: 1 MKLISWNVNGLRACVKNG---FLDFFTKENADVFCIQETKI------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ +
Sbjct: 39 ---QEEQI---------PFQLDGYYSYWNFAQKKGYSGTAIFSKT--EPINVSYGIGME- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI E+E F+L+ Y PN+ + R KW+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEYEPFFLVTVYTPNS--QRGLARLDYRMKWEDDFLAYLKTLEKSKPII 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H+EID+ +P+ NK++ GFT ER +F +L G ID
Sbjct: 141 FCGDLNVAHQEIDLKNPK------------TNKKN---AGFTSEERDKFSQVLNHG-FID 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
++RF + E+ D WS + RIDYF VS LKD++ +
Sbjct: 185 SFRFFYPEQ-RDAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQLKNVSI------YSDV 237
Query: 338 YGSDHCPVSLEL 349
YGSDHCPV LE+
Sbjct: 238 YGSDHCPVGLEV 249
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 147/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V + F D D LQE +M
Sbjct: 1 MKFVSWNVNGLRACVGKS---FEESFRMLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y+ +W+ A+ K Y+GTA+ + QP+ VS+ + A
Sbjct: 39 ---QEGQLNLQ-------FEGYEAYWNYAEKKGYSGTAIYTRH--QPQSVSYGMGVEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E FYL+ Y PN+ ++ R +W++ +++ + K P+I C
Sbjct: 85 HDHEGRIITLEMPGFYLVTVYTPNS--QDGLKRLAYRMQWEEDFLQYIKKLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER +F +L EG D +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRHNAGFTDEERNKFTTLLSEG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E+ +S WS + + RIDYF+VS LK +II ++
Sbjct: 187 RYKYPEQ---VRYSWWSYRFQARAKNAGWRIDYFVVSNRLKPQIIDAKIH------TAIL 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV +EL+
Sbjct: 238 GSDHCPVEVELN 249
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID Y
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW +G R K + R+DYF++SE LK +I ++
Sbjct: 188 RYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE------I 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELHIN 251
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 141/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFRELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + +A +
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGIGISA--H 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF+ YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFDDVYLVTVYTPNA--KRALERLDYRMMWEDAFRAFLLGLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L+ G ID +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLQAG-FIDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ + WS + RIDYF+VS EL+DRI A E+ +GS
Sbjct: 188 ALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHAD------IFGS 240
Query: 341 DHCPVSLEL 349
DHCPVSL L
Sbjct: 241 DHCPVSLTL 249
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 151/317 (47%), Gaps = 69/317 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + L VK N +I DPD+I LQE + KD PK
Sbjct: 14 LKIASWNVDGLRGTVKKNG---HAYIPQEDPDIICLQETK---CTEKDVPKEFTA----- 62
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y W+S + K YAGTALL K +P KV++ + +
Sbjct: 63 --------------TVEGYHGY--WYSPTEKKGYAGTALLSKT--KPIKVTYGI--GVDE 102
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF+ FY++ Y PN G R WD+ ++ + KP++ C
Sbjct: 103 HDDEGRVITAEFDDFYMVTAYVPNAG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVLC 160
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ NK PGFT ER+ F +L EG D+Y
Sbjct: 161 GDLNVAHNEIDLKNPK------------GNKNK--TPGFTDKEREGFTTLLDEG-FKDSY 205
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSE----ELKDRIIACEMQGHGIE 333
R L+ E + DC WS +G R K + R+DYF++S+ +L D +I E+
Sbjct: 206 RELYPE-ETDCYTFWS--YMGGARAKNVGWRLDYFVLSDRLMPQLCDNVIRSEVM----- 257
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP+ L L+
Sbjct: 258 -----GSDHCPIVLLLA 269
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F +F D D+ LQE ++ + EL+
Sbjct: 1 MKLISWNVNGIRACVKKG---FLDFFKETDADIFCLQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 47 ------------------LEGYHQYWNYAERKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K E R W+ + ++L+ + KP+I C
Sbjct: 85 HDQEGRVITLEFDNFYMVTVYTPNS--KNELLRLDYRMVWEDEFRSYLLRLNETKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFTI ER + +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNQKNAGFTIEERTKMSTLLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RF + E ++ +S WS + RIDYF+ S+ELK+ + ++ +
Sbjct: 187 RFFYPE--LEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDIL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 142/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F T + D LQE +M A
Sbjct: 1 MKFISWNVNGLRACVGK---DFEAQFKTLNADFFCLQETKMQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+L L F YQ +W+ AD + Y+GTA+ + P V++ + A
Sbjct: 42 ------QLYLQ-------FDGYQSYWNYADKRGYSGTAIYTRHT--PLSVTYGIGVDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E FYL+ Y PN+ ++E R W+ + F+L KP+I C
Sbjct: 87 HE--GRVITLEMNDFYLVTVYTPNS--QDELKRLDYRMTWEDDFKTFLLALDARKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDMNVAHQEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RF++ E + +S WS + R RIDYF+VS+ LK +I ++ +
Sbjct: 187 RFMYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSDRLKPQIADAKIHTDIL------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 238 GSDHCPVELDL 248
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 6 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ L ++
Sbjct: 44 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGLGIE--EH 90
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 91 DHEGRVITMEFEDIYLVTVYTPNS--KNALARLDYRLVWEDAFRAFLLDLRAKKPVVVCG 148
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER + +L G ID +R
Sbjct: 149 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKLTELLGAG-FIDTFR 192
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +G
Sbjct: 193 ALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFG 244
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 245 SDHCPVSLTL 254
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 148/311 (47%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---EFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLSVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ + R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE LKDR+ ++ +
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIM------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV + L
Sbjct: 238 GSDHCPVEIIL 248
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEESNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + PGF+ ER++F L EG +D Y
Sbjct: 144 GDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTLAL-EGGFVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + +SW +G R K + R+DYF+VSE +K +II ++ +
Sbjct: 188 RYLY--PNQEGAYSWWSYLMGA-RAKNIGWRLDYFVVSERIKGQIIDAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 148/330 (44%), Gaps = 62/330 (18%)
Query: 23 KKDGETTETSSEENSKKDP-LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
K D ++TS N+ KF +WN N L +K + P F+ T D D+ ALQE +
Sbjct: 9 KSDTAVSQTSRSSNTADTKEYKFASWNVNGLRAVLKKD-PSFTEIFETIDADIFALQETK 67
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 141
+ QE + D L P + +Q W Y+GTA+
Sbjct: 68 L------------QEGQVD--------------LDIPSY--FQTWNYAERKGYSGTAVFS 99
Query: 142 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201
++ +P +V + E GRV EF+ F+ ++ Y PN+ KE+ R WD
Sbjct: 100 RE--EPLQVIRQIGSPVADNE--GRVCALEFDRFWFVDVYTPNS--KEQLARLDERLVWD 153
Query: 202 KRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 260
+R ++F+ + S KPLI CGD NV+H EID+ +P + GF+
Sbjct: 154 ERYRDFIAELSAQKPLITCGDFNVAHTEIDLKNP---------------SSNHKNAGFSD 198
Query: 261 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELK 319
ER+ F +L G D +R+ H D+ +S WS + RIDYF+VS
Sbjct: 199 EERESFTKLLDAG-FTDTFRYRH--PDVTGAYSWWSYRFNARKNNAGWRIDYFLVSNR-- 253
Query: 320 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
IA ++ G I L YGSDHCPV L +
Sbjct: 254 ---IAQQITGAAI-LNEVYGSDHCPVELTI 279
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 165/344 (47%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D T+ + K LK +WN + L +K + +++
Sbjct: 17 EKEATGEGSVLYEDPPDKNTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 68
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 69 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 104
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G +L ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 105 PSDKEGYSGVGILSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 159
Query: 188 KEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 160 -RGLVRLEYRQRWDEAFRKFLKGVASHKPLVLCGDLNVAHEEIDLRNPK----------- 207
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L+D++R L+ F W+ + +
Sbjct: 208 -GNKKN---AGFTPQERQGFGELLQAVPLVDSFRHLYPNTAYAYTF-WTYMMNARSKNVG 262
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 263 WRLDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 300
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N L + F +F D D+I LQE+++ + D P
Sbjct: 1 MKFVSWNVNGLRAVMGKG---FMDFFDGIDADIIGLQEIKLSEGQLEWDKP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y +W+ A+ K Y+GTA+ KK +P VS+ +
Sbjct: 49 ---------------------GYHAYWNYAEKKGYSGTAVFTKK--EPISVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R W+ + ++ + + K +I
Sbjct: 84 EHDHEGRVITLEFEDFYFITCYTPNS--QNELKRLDYRMTWEDDFRAYLQKLNEKKGVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GFT ER + +L G +D+
Sbjct: 142 CGDLNVAHEEIDIKNP---------------KTNRHNAGFTDEERAKMTELLSAG-FVDS 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + ++ D WS + + RIDYFIVSE++KDR+ ++ +
Sbjct: 186 FRYFYPDQ-TDIYSWWSYRFKAREKNAGWRIDYFIVSEDIKDRMKDSKIHTDVM------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+
Sbjct: 239 GSDHCPIELDF 249
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT E + FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQEAQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 151/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVTKG---FMDFFNEIDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L P + Y W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 39 ---QEGQL----ELEMPGYYQY---WNYAEKKGYSGTAIFTKK--EPMDVKYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + E R +W+ + ++ + KP++ C
Sbjct: 85 HDHEGRVITLEFEDFYMVTCYTPNS--QNELKRLDYRMQWEDDFKAYLKKLEESKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L +G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMTKLLDDG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + + RIDYFIVSE LKD+ ++G I E
Sbjct: 187 RYFY--PDLEGKYSWWSYRFKAREKNAGWRIDYFIVSEALKDK-----LEGADIHTE-IL 238
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L+L+
Sbjct: 239 GSDHCPIELDLN 250
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 165/344 (47%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 36 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 87
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 88 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 123
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 124 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 178
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 179 -RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 227
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 228 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 281
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 282 WRLDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 319
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R+ WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQCWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ + F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAAPLTDSFRHLYPNRAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 179/387 (46%), Gaps = 59/387 (15%)
Query: 1 MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVK--N 58
MKRF +EKE + + ET + +K P F+T N N LL ++ +
Sbjct: 1 MKRFL-TVEKE----------EEDNTETNAIKKAKIKRKYPSTFLTVNVNGLLSKINSPD 49
Query: 59 NWPEFSNFIT---TFDPDVIALQEVRMPA---AGSKDAPKNHQELKDD--TKASREEKLI 110
W E +T + + DVI++ E +P +G + K Q +D K+ RE
Sbjct: 50 KWKEKQTLLTYLRSANADVISITETWIPGNGSSGGSSSKKYTQPYSNDGTNKSYRESANG 109
Query: 111 LMRALSSPPF-KNYQIWWSLADSKYAGTALLV--KKCFQPKKVS--FSLEKTALKYEPDG 165
+ L S F + Y +++ K AG LV ++ +P +V F+ E + P G
Sbjct: 110 IESLLDSNGFLRKYARYYNCFHQKSAGVLTLVNAEEVEKPNRVRLRFTNEDKGEEEWP-G 168
Query: 166 RVILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLI 217
RVI +F +L+TY+PNNG E S +RRR+WD + + + Q G I
Sbjct: 169 RVIECQFGDDEDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQLRKEGVDFI 226
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
W GDLNV+ + IDV + A P D+G GFT E++RF IL+ D
Sbjct: 227 WNGDLNVAPDGIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQNILEASEASD 282
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGK-------RMRIDYFIVSEELKDRIIAC----- 325
AYR ++ E+ ++W + K GK MR+D +VS+ LK +I C
Sbjct: 283 AYRVVNGERR---SYTWRAYTVNKVGGKVFNTVNPGMRLDLMVVSKNLKSKIQRCYHATD 339
Query: 326 ---EMQGHGIELEGFYGSDHCPVSLEL 349
+ + + +E F+GSDHC V LEL
Sbjct: 340 DLPDTEAMKMPMEKFFGSDHCAVHLEL 366
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K +F D DV+ LQE +M A P+
Sbjct: 1 MKLISWNVNGLRAVMKK---DFEGIFEAMDTDVLCLQETKMQAGQLDYDPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +++ A+ K Y+GTA+ + +P V++ +++ +
Sbjct: 50 ---------------------YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
+ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++ C
Sbjct: 85 HNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P +A + N PGF+ ER++F +L G ID++
Sbjct: 143 GDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R LH +D WS + R RIDYF+VSE L++ I A ++ L+ G
Sbjct: 187 RELHPNA-IDRYSWWSYRANARSRNIGWRIDYFVVSERLRNAIEAADI------LDQVLG 239
Query: 340 SDHCPVSLELS 350
SDHCPV ++L+
Sbjct: 240 SDHCPVMIKLN 250
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 149/311 (47%), Gaps = 62/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + K +F + I+ DPDV+ LQE T
Sbjct: 1 MKIISWNVNGVRAITK---KDFFDDISKMDPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA EE + ALS +Y +++ A+ K Y+G A+L KK +P V++ + +
Sbjct: 37 KAQNEE---VEEALSE--MTDYHQYYNSAERKGYSGVAILSKK--EPISVTYDM--GIAE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE++TFYL+N Y PN+G K E + R+ WD ++ K +I C
Sbjct: 88 HDTEGRVICAEYDTFYLVNVYVPNSGQKLERLDY--RKGWDTDFHNYLKNIEKTKSVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ N NK G+T E L EG +D +
Sbjct: 146 GDLNVAHQAIDLK----------NDKANYNK----TAGYTQIEIDGMDNFLNEG-FVDTF 190
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H E ++ WS + R RIDYF+VS L +++ E+ L ++
Sbjct: 191 RHFHPET---VAYTYWSYRFKSRERNTGWRIDYFLVSNPLVEKVNKVEI------LSEYF 241
Query: 339 GSDHCPVSLEL 349
GSDHCP+ LE+
Sbjct: 242 GSDHCPIKLEI 252
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 140/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +K + WS + RIDYF+VSEEL+DRI A E+ +GS
Sbjct: 188 ALYPDKTGAYTW-WSYLRHARETNAGWRIDYFLVSEELRDRISAAEIHAD------VFGS 240
Query: 341 DHCPVSLEL 349
DHCPVSL L
Sbjct: 241 DHCPVSLTL 249
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 147/311 (47%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F ++ D DV +QE T
Sbjct: 1 MKCVSWNVNGVRAVLTKG---FLDYFKAVDADVFCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K + I + P + YQ W Y+GTAL KK +P VS+ L ++
Sbjct: 37 KCQEGQVEIEL-----PGY--YQYWNYAQKKGYSGTALFSKK--EPLSVSYGL--GIAEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEFE Y++ Y PN + E R W+ + ++ + KP+I CG
Sbjct: 86 DTEGRVITAEFEEAYVVTVYTPNA--QNELARIDYRMAWEDAFKAYLKKLEENKPVIICG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + G GF+ ER +FG +L+ G ID +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRGNAGFSDEERGKFGELLEAG-FIDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + D++ +S WS + + RIDYF+ SE LKD+++ G I+ E G
Sbjct: 188 YFY--PDLEGAYSWWSYRFKAREKNTGWRIDYFLASEVLKDKLV-----GAAIDAE-ILG 239
Query: 340 SDHCPVSLELS 350
SDHCPV LE++
Sbjct: 240 SDHCPVILEIN 250
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 150/311 (48%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ + EL+
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDADIFCVQETKLQ--------EGQIELE---- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 48 -----------------LEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EFE ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CG
Sbjct: 87 DNEGRVITLEFEEYFLVNVYTPNS--KRELERLEYRMKWEDDFRVYLKQLEQTKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +P NK GFT+ ER++F +L++G +D +R
Sbjct: 145 DMNVAHQEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ +K ++W + + K R K + RIDYF +SE LKDRI A E+
Sbjct: 189 TLYPDKTG--AYTW-WSYMFKAREKNVGWRIDYFCISEALKDRIEAAEIYCD------IM 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 GSDHCPVGLTI 250
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 149/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E +F+ + D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVTKGFKE--SFVE-LNADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P V + L+ +
Sbjct: 46 -----------------TFDGYESYWNYADKKGYSGTAIFTKH--KPINVHYGLDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E ETF+L+ Y PN+ ++ R KW+ Q ++ Q K P++ C
Sbjct: 85 HDHEGRVITLEMETFFLVTCYTPNS--QDGLKRLDYRMKWEDDFQAYIKQLDKKKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER + L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERAKMTQFLNNG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++S L++++I ++ Y
Sbjct: 187 RTLYPEQ---ITYSWWSYRFKAREKNAGWRIDYFLLSNRLRNQLIDAKIHTE------VY 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV +EL+
Sbjct: 238 GSDHCPVEVELN 249
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L +
Sbjct: 39 ---QEGQIEL-------ELEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E++ FY++ Y PN+ +EE R W+ + +V++ KP+I C
Sbjct: 85 HDKEGRVITLEYDDFYMITVYTPNS--QEELARLSYRMSWEDEFRNYVMKLDKLKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER +F +LK G +D++
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRKNAGFSDEERAKFTELLKNG-FVDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R + E + +S WS + RIDYF+VSE LKD + E+ +
Sbjct: 187 RHFYPE--LTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 GSDHCPVVLKL 249
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + P L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGDGPVLYEDPPDKKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KV++ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVTYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNAAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
LK+++WN N L +K F D D LQE ++ P D P
Sbjct: 4 LKYISWNVNGLRACMKKG---FMQSFKELDADCFCLQETKLQPDQIELDLPGY------- 53
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
YQ W S Y+GTAL K +P V++ + +
Sbjct: 54 ----------------------YQYWNSAVKKGYSGTALFTK--IKPLSVTYGIGME--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI A+F L+ Y PN+ + R KW+ ++++L S K P+I C
Sbjct: 88 HDQEGRVITADFNDHCLVTCYTPNS--QRGLARLTYRMKWEDDFKKYLLDLSKKKPVILC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+++P A+ +N GFT ER + +L +G D++
Sbjct: 146 GDLNVAHEEIDLANP---ASNHMNA------------GFTDDERNKMTELLSDG-FTDSF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+LH++K D WS + R RIDYF+VS+ L+ RI A E+ G
Sbjct: 190 RYLHQDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDILQPRIKAAEIHS------SILG 242
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 243 SDHCPVELDI 252
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPAELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ D DV LQE ++ +
Sbjct: 1 MKLISWNVNGLRACITKG---FLDYFKEVDADVFCLQETKIQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + ++ W+ A+ K Y+GTA+ KK K +S+S K
Sbjct: 45 -------------LELPGYYDF---WNYAEKKGYSGTAIFTKK----KPISYSYGINEEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ KE+ + R +W+ + ++ KP+I C
Sbjct: 85 HDKEGRVITLEFEDFYMVTVYTPNS--KEKLARLEYRMEWEDSFRNYLKALDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H EID+ +P K + GF+ ER +F +L+ G ID Y
Sbjct: 143 GDMNVAHTEIDLKNP---------------KTNTKNAGFSPEERSKFTELLEAG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + + RIDYF SE LKD++++ ++ + G
Sbjct: 187 RYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFCTSERLKDKLVSADIHTEVM------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 240 SDHCPVELVI 249
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 146/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS + + D LQE +M A EL+
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFESLNADFFCLQETKMQAG--------QLELQ--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+GTA+ +K +P VS+ + +
Sbjct: 47 ------------------FPGYTSYWNYAEKKGYSGTAIYTRK--EPLAVSYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E++ F+L+ Y PN +EE R W+ Q ++ Q K P+I C
Sbjct: 85 HDHEGRVITLEYDKFFLVTVYTPNA--QEELRRLDYRMTWEDAFQAYLHQLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER + +L G D +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRSAGFTDEERSKMTQLLSNG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R LH E+ +S WS + + RIDYF++S+ L+ +++G I E Y
Sbjct: 187 RTLHPEQ---ITYSYWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKGASIHTE-IY 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 238 GSDHCPVELDI 248
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 67/314 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GI 90
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE+E FY++ Y PN+ + + R W+ +++L+ KP+I
Sbjct: 91 EEHDNEGRVITAEYEDFYMITCYTPNS--QRGLTRLEYRMTWEDAFLKYILELEKNKPVI 148
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H EID+ +P K + GFT ER + IL G +D
Sbjct: 149 FCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKMDVILSSG-FVD 192
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 335
++R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++
Sbjct: 193 SFRVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSE----- 244
Query: 336 GFYGSDHCPVSLEL 349
+GSDHCPV L++
Sbjct: 245 -IFGSDHCPVELDI 257
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 144/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F + D D+ +QE +M A + D P HQ
Sbjct: 1 MKFISWNVNGIRACAQKG---FMDIFNEADADIFCIQESKMQAGQLELDTPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKE--EPLSVSYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+
Sbjct: 84 EHDKEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMRWEDAFLAYLKKLEEKKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTNLLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + + RIDYF VSE LKDRI ++ L
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKI------LTEI 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L+
Sbjct: 238 MGSDHCPVELDF 249
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 155/317 (48%), Gaps = 57/317 (17%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
N K LK +WN + L +K + +++ PD++ LQE + P Q
Sbjct: 55 NGKSATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPVELQ 108
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
EL P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 109 EL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGI 145
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSG 213
+ +++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S
Sbjct: 146 GEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASR 201
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+
Sbjct: 202 KPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAV 246
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
L D++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 247 PLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL- 304
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 305 -----GSDHCPITLYLA 316
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + V F ++ D DV +QE ++ K+H +
Sbjct: 1 MKLVSWNVNGIRACVGKG---FLDYFYQIDADVFCIQETKLQEGQISLELKDHSQ----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A K Y+GTA+ KK +P V + + T +
Sbjct: 53 ------------------------YWNYAVKKGYSGTAIFSKK--KPLSVQYGIGTT--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR I EFE FYL+N Y PN+ + + R W+ ++EF+ + + KP+I C
Sbjct: 85 HDSEGRAITLEFEEFYLVNIYTPNS--QRDLARLNYRVAWEDYLREFLQELDTKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H EID+ +P K + GFT ER + +L G +D +
Sbjct: 143 GDMNVAHHEIDLKNP---------------KSNMKNSGFTPEERGKMTELLNNG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ EK+ + WS + R RIDYF+VSE L++ II ++ G
Sbjct: 187 RHLNPEKE-NVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHS------DIMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVLLEI 249
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 148/325 (45%), Gaps = 69/325 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ P + S + T D DVIALQE ++ A G K H
Sbjct: 3 MKFISWNIDSLNAALTSDSPRAQLSQAVLTHLASLDADVIALQETKLSAKGPT---KKHL 59
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ A R F Y I W A YAGT L K+ ++S
Sbjct: 60 EIL----AER--------------FPGYAIAWRSSVEPARKGYAGTMFLYKQ-----ELS 96
Query: 152 FSLEKTAL----KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
++E + + +GR+I EF+ FYL Y PN G + R+ WD++ +++
Sbjct: 97 VTIETPEIGAPSTMDSEGRIITLEFDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDY 154
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+L+ KP+I GD NV+H EID++HP + PGFT ER+ F
Sbjct: 155 LLELDAKKPVIATGDYNVAHFEIDLAHP---------------NNNRNSPGFTDEERQGF 199
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIA 324
+L G D +R +H + + +SW + K RIDYFI SE + D+I A
Sbjct: 200 TNLLSAG-FTDTFRHVHGQ--VPNVYSWWAQRSKTSKINNAGWRIDYFIASERIADKICA 256
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
EM G DH P+ LE+
Sbjct: 257 SEMIDSGAR------QDHTPILLEI 275
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--LKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EFE YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +G
Sbjct: 188 ALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 149/311 (47%), Gaps = 67/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D D+ +QE ++ A
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETDADIFCVQETKLQAG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++ L Y +W+ A+ K Y+GTA+ KK +P V + + + +
Sbjct: 42 ------QIAL-------DLDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGED--R 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ + KP+I C
Sbjct: 85 TEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWEDRMRAYLTELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ + K + G GFT ER + +L G ID++
Sbjct: 143 GDMNVAHQEIDLKNA---------------KNNVGNSGFTAEERGKMTGLLNSG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + E+ + ++W + + K R + + RIDYF+VS+ L R+ M
Sbjct: 187 RYFYPER--EGAYTWW-SYMNKVRERNIGWRIDYFLVSKRLAGRLKDAGMYPE------I 237
Query: 338 YGSDHCPVSLE 348
GSDHCPV LE
Sbjct: 238 MGSDHCPVFLE 248
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 63/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V + E+ N + D DV +QE ++ A G D P
Sbjct: 3 KLISWNVNGLRACVGKGFLEYFNEV---DADVFCIQESKLQA-GQIDLP----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ +P V++ + ++
Sbjct: 48 -----------------LEGYYQYWNYAEKKGYSGTAMFTKE--EPVSVAYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEF +Y++ Y PN+ K+ R +W+ ++ KP+I+CG
Sbjct: 87 DKEGRVITAEFPEYYVVTCYTPNS--KDGLARLPYRMEWEDAFLAYLKGLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER +F +L G ID YR
Sbjct: 145 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERGKFSDVLAAG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K + WS + + RIDYF VSE LKDR+++ ++ +E++ GS
Sbjct: 189 YFYPDKTEVYSW-WSYRFSARAKNAGWRIDYFCVSEALKDRLVSADIH---MEVQ---GS 241
Query: 341 DHCPVSLELS 350
DHCPV L +S
Sbjct: 242 DHCPVELVIS 251
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ + ++ N I D D+ +QE ++ + EL+
Sbjct: 1 MKLVSWNVNGLRACVRKGFLDYFNEI---DADIFCIQETKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K F+P V + L +
Sbjct: 47 ------------------LNGYHQYWNYAEKKGYSGTAVFTK--FKPISVKYGLSNEESQ 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E GR++ EFE F+L+N Y PN+ + + R +W+ + E VL KP++ C
Sbjct: 87 VE--GRILTLEFENFFLINVYTPNS--QRDLARLDVRLEWEDVLLEHVLAHDRIKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + K ++G GFT ER++ L G ID
Sbjct: 143 GDLNVAHREIDIRNY---------------KSNYGNSGFTDEEREKMTRFLNAG-FIDTL 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ H + + + WS + R RIDYFIVSE L++++I + +G
Sbjct: 187 RYFHPDTEGIYTW-WSYMKTVRERNIGWRIDYFIVSERLREKLIDSKAD------TAIFG 239
Query: 340 SDHCPVSLELS 350
SDHCP+ L++S
Sbjct: 240 SDHCPIVLDIS 250
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F++ + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FADAFNRLEADFFCLQETKM------------QEGQLDV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+ YQ +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 Q-----------------FEGYQSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E++YL+ Y PN+ +EE R KWD + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESYYLITVYTPNS--QEELRRLDYRMKWDDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G D +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG-FTDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF+ S+ LKD++ ++ + G
Sbjct: 188 RYFYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDIL------G 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELTI 250
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 148/318 (46%), Gaps = 53/318 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFITT----FDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + I T DPD++A+QE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGILTKLHDLDPDILAIQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
+L + E + R+ P K Y AGT L KK +P V++
Sbjct: 58 KLLAELFP---EYTYVWRSSVEPARKGY-----------AGTMYLYKKDLEPT-VTYPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF FY+ Y PN+G R++WD+ + ++ + K
Sbjct: 103 GAPEPMDAEGRMITLEFPDFYVTEVYTPNSG--TGLKRLDERQEWDQCYRTYLEKLDAQK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD N +++EID+ HPE + GFT ER FG +L G
Sbjct: 161 PVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQLLGSG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
+D +R LH + ++ +SW + K RIDY++VSE L D++ EM G
Sbjct: 205 FVDTFRLLHGQ--VEGVYSWWAQRVRSAKANNSGWRIDYWLVSERLADKVTKSEMIDTGE 262
Query: 333 ELEGFYGSDHCPVSLELS 350
+DHCP+ LE+S
Sbjct: 263 R------ADHCPILLEVS 274
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMEAFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVAYGIGIP--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DHEGRVITMEFNDVYLVTVYTPNA--KRALERLDYRMTWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+ +G
Sbjct: 188 ALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------VFG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 58/316 (18%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ + +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTECVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ K++ +GRVI E+ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GI--GIAKHDNEGRVITLEYVQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLN 242
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L+
Sbjct: 243 ATKPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLE 287
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
+G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I
Sbjct: 288 KG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTS 345
Query: 332 IELEGFYGSDHCPVSL 347
+ GSDHCP+ +
Sbjct: 346 V-----MGSDHCPIGV 356
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 165/340 (48%), Gaps = 62/340 (18%)
Query: 13 SAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDP 72
+++ PAL D +T+ + K LK +WN + L +K + +++ P
Sbjct: 5 ASEGPALYEDPPDQKTSPSG-----KPATLKIASWNVDGLRAWIKK---KGLDWVKEEAP 56
Query: 73 DVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADS 132
D++ LQE + P QEL P ++Q W + +D
Sbjct: 57 DILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDK 92
Query: 133 K-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEE 191
+ Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 93 EGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGL 146
Query: 192 NSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK
Sbjct: 147 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNK 194
Query: 251 EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRID 310
++ GFT ER+ FG +L+ L D++R L+ F W+ + + R+D
Sbjct: 195 KN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLD 250
Query: 311 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
YF++S L + +++ + GSDHCP++L L+
Sbjct: 251 YFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 284
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 146/319 (45%), Gaps = 63/319 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F +F D DV LQE +
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLDFFQQVDADVFCLQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S Y+ +W+ A+ K Y+GTA+ K P V++ +
Sbjct: 38 ---------LQKGQISLELPGYEQYWNDAERKGYSGTAIFTKH--SPLSVTYGIGDHFP- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
E +GRVI EFET+Y++ Y PN K + + R +W+K +E++ L + KP+++C
Sbjct: 86 -ENEGRVITLEFETYYVVTMYTPNA--KRDLSRLPYRLQWEKAAREYLTLLATQKPVVFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ IDV + ++ + G GFT ER FG +L+ G +D +
Sbjct: 143 GDLNVAHQPIDVRN---------------DRANVGNSGFTDEERAEFGKLLEAG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + + D D WS + R RIDYF++S L ++ + + G
Sbjct: 187 RHFYPD-DEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVL------G 239
Query: 340 SDHCPVSLELSEASSDSEK 358
SDHCP+ L L ++S +
Sbjct: 240 SDHCPIELCLDLQPNESSR 258
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 149/323 (46%), Gaps = 65/323 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I +D DVIA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTSDSNRAQLSRDVLDTIAEYDADVIAIQETKLSANGPT------- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+K I + A P +Y+I W A YAGT L K +P ++
Sbjct: 54 -----------QKHIDILAERLP---DYEIAWRSSEEPARKSYAGTMFLYKNMLEPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF ++ Y PN G + ++R WD++ +E+++
Sbjct: 99 FPEIGAPDTMDQEGRIITLEFPNCFVTQVYTPNAGGNLDR--LEKREAWDEKYREYLVAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPE--FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I GD NV+H EID++HP+ F+A GFT ER F
Sbjct: 157 DEQKPVIASGDYNVAHTEIDLAHPDRNHFSA-----------------GFTDEERTNFTT 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G D +R++H D++ +SW G + K RIDYF+VS+ LK+++I E
Sbjct: 200 LLNNG-FADTFRYVH--GDIEGHYSWWGQRVKTSKINNSGWRIDYFLVSDRLKNQVITSE 256
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 257 MIDSGKR------QDHTPIFLEV 273
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 148/311 (47%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + YQ W S Y+GTAL K +P VS+ + ++
Sbjct: 46 -----------IELNIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I AEFE +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CG
Sbjct: 89 DQEGRLITAEFENHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+++P + GFT ERK+F +L+ G D +R
Sbjct: 147 DLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDTFR 190
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEG 336
+L+ +K D WS + R RIDYF+VS++LK++I I E+Q
Sbjct: 191 YLYPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQ-------- 241
Query: 337 FYGSDHCPVSL 347
GSDHCPV L
Sbjct: 242 --GSDHCPVEL 250
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F ++ D DV +QE ++ QE + D
Sbjct: 3 KMISWNVNGLRACVEKG---FLDYFKEMDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + Y W+ A+ K Y+GTAL K+ +P V++ + A ++
Sbjct: 46 ------------LTLPGYHQY---WNYAEKKGYSGTALFTKE--KPLSVAYGI--NAEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+ +Y++ Y PN+ + E R W+ + ++ + KP+I+CG
Sbjct: 87 DREGRVIAAEYPEYYVVTCYTPNS--QNELARLPYRLTWEDAVLAYLKKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER++F +L+ G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTVLLESG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + E++ + WS + + RIDYF VSE LKDR+ + + + GS
Sbjct: 189 YFYPEQEGIYSW-WSYRFSARKKNAGWRIDYFCVSESLKDRLASAAIHTEVL------GS 241
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 242 DHCPVELVI 250
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNQKNAGFTDEERGKFTELLSAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF VSE LKDR+ ++ L G
Sbjct: 187 RYFYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L+
Sbjct: 240 SDHCPVELDF 249
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 149/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW++ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEEDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H+EID+ +P K + PGF+ ER++F +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTLLLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K + + WS + RIDYF VS+ LK+++ + + +
Sbjct: 186 FRYFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPVS+E+
Sbjct: 239 GSDHCPVSIEI 249
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMVWEDEFRSYLAKLNEAKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER +F +LK G D++
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERSKFTELLKAG-FTDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + RIDYF+VS + K++I E+ E E G
Sbjct: 187 RYLYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---G 239
Query: 340 SDHCPVSLEL 349
SDHCPV+L L
Sbjct: 240 SDHCPVALYL 249
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 115 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 173
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 19 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 71
Query: 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 232
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 72 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 129
Query: 233 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 292
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 130 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 171
Query: 293 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 172 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 224
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +PE I D D + LQE +M A +L+ D
Sbjct: 1 MKFISWNVNGLRAVFGKGFPEI---IQGLDADFVCLQETKMQAG----------QLEAD- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y +W+ A+ K Y+GTA+ + +P VS+ +
Sbjct: 47 ------------------LPSYHTYWNYAEKKGYSGTAIYTRH--EPLSVSYGIGID--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E+ FYL+ Y PN+ +++ R W+ + ++++ K P+I C
Sbjct: 85 HDTEGRVITLEYTDFYLVTVYVPNS--QDDLRRLGYRMTWEDDFRAYLVELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEERGKFQELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ H ++ D WS + R RIDYF+ S+ L ++ + ++ +G
Sbjct: 187 RYFHPDQ-RDIYSWWSYRFKARERNSGWRIDYFVTSQRLAPQLASAKIHTE------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L L
Sbjct: 240 SDHCPVELVL 249
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 137/271 (50%), Gaps = 35/271 (12%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 139
+ AA K EL D +E KL + L P + +Y W+ A+ K Y+G A+
Sbjct: 14 LRAAAGKTFFDAFHELDADIFCIQESKLQEGQIELDLPGYYDY---WNYAEKKGYSGVAM 70
Query: 140 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199
K+ +P VS+ L +++ +GRVI EF +Y+L Y PN+ + E R +
Sbjct: 71 FTKE--KPVNVSYGL--GIPEHDKEGRVITLEFPDYYVLTCYTPNS--QNELKRLDYRME 124
Query: 200 WDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 258
W+ ++ K PLI+CGDLNV+HEEID+ +P N+ + GF
Sbjct: 125 WEDAFFAYIKGLDQKKPLIYCGDLNVAHEEIDLKNP------------STNRRN---AGF 169
Query: 259 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 318
T ER++ +L G +D++R+LH E + D WS + R RIDYFIVSE L
Sbjct: 170 TDEEREKMTRVLTNG-FVDSFRYLHPE-EKDAYSWWSYRMKARERNVGWRIDYFIVSERL 227
Query: 319 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
KDRI QG I E GSDHCPV L++
Sbjct: 228 KDRI-----QGASIHSE-ILGSDHCPVELKI 252
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G D +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERTKFTTLLESG-FTDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF+ S+ LKDR ++G I + F G
Sbjct: 188 RYFYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-G 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELTI 250
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 148/313 (47%), Gaps = 68/313 (21%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N L L K N F++++ + D+ LQE+++ K P+
Sbjct: 1 MKLMSWNVNGLRALLTKMN---FNSYLEEENVDIFCLQEIKLQDGQIKLEPEG------- 50
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y ++W+ A+ K Y+GTA+ KK +P V++ L
Sbjct: 51 ----------------------YHVYWNYAEKKGYSGTAIFTKK--EPLAVTYGL--GIK 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I EFE Y++ Y PN K R W+ ++ KP++
Sbjct: 85 EHDQEGRLITLEFENMYVITVYTPNA--KRGLERIDYRMDWEDAFLSYIKALDVKKPVVL 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GF+ ER+RF +L+EG ID
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRKNAGFSDQERERFSQMLEEG-FIDT 186
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R+LH D + +SW + R K + R+DYFIVSE LK +I ++ +
Sbjct: 187 FRYLH--PDQEGAYSWWSYRMNA-RAKNVGWRLDYFIVSERLKKQIRGAKICNEVM---- 239
Query: 337 FYGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 --GSDHCPVELTI 250
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L +K + + N I + DV ALQE+++ + G D
Sbjct: 1 MKLVSWNVNGLRAVIKKGFVDSFNEI---NADVFALQEIKL-SEGQLDFE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+++++ A K Y+GTA+ + +P VS+ + +
Sbjct: 47 ------------------LEGYKMYYNYAQRKGYSGTAIFTR--IEPISVSYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AEFE FY + Y PN+ K + R W+ + ++ + KP++ C
Sbjct: 85 HDTEGRVITAEFEKFYFVTCYTPNS--KRGLERLEYRMVWEDVFRNYLNKLRETKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+++P N ++ GFT ER +F +LK G ID +
Sbjct: 143 GDLNVAHEEIDLANP------------ATNHKN---AGFTNEERSKFTELLKSG-YIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ + + WS + R RIDYF+VSEELK + ++ + G
Sbjct: 187 RYFYPDRKDEYSW-WSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIH------QSVMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L L
Sbjct: 240 SDHCPVELVL 249
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 141/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V+ +F T D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVQK---DFEESFRTLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +W+ A+ K Y+GTA+ + P V++ + +
Sbjct: 47 ------------------FEGYTSYWNYAEKKGYSGTAIYTRH--TPLSVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R KW+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTCYTPNS--QDGLRRLDYRMKWEDDFLQYIKGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT E + A L EG ID +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEECAKMTAFLGEG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R LH + D +S WS + + RIDYFI SE L++RI + + +
Sbjct: 187 RTLHPD---DPTYSWWSYRFKAREKNAGWRIDYFITSERLRERITSAAIHNE------VF 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 238 GSDHCPVELIL 248
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 60/321 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 50 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 93
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 94 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 139
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + + +++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++
Sbjct: 140 KYGIGEE--EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKG 195
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +
Sbjct: 196 LAARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKL 240
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L+EG +D +R L+ + F W+ + + R+DYF+VS++L++ I +++
Sbjct: 241 LEEG-FVDTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRS 298
Query: 330 HGIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L ++
Sbjct: 299 TAL------GSDHCPITLYIA 313
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LKF++WN N L F + + D LQE +M QE + D
Sbjct: 2 LKFISWNVNGLRACYDKG---FVDVFHRLEADFFCLQETKM------------QEGQLDA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 47 K-----------------FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + KP+I C
Sbjct: 86 HDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G D +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG-FTDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF+ S+ LKDR ++G I + F G
Sbjct: 188 RYFYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-G 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELTI 250
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 137/309 (44%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M A
Sbjct: 5 MKFISWNVNGLRAVVK---KDFDKTFNDLDADFFCIQETKMQAG---------------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
AL+ P + Y ++ A+ K Y+GTA+ K P V + ++
Sbjct: 46 ----------QLALTLPGYHQY---FNYAERKGYSGTAIFTKHA--PLNVYYGIQSDEFD 90
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I E+ TFYL+ +Y PN+G K + F R WD Q+++ + KP+I C
Sbjct: 91 HE--GRAITLEYPTFYLVTSYVPNSGAKLKRLDF--RMGWDVAFQQYLANLNKEKPVILC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ +P+ + GFT ER F L +G +D +
Sbjct: 147 GDLNVAHKTIDLKNPQ---------------TNHHNAGFTDEERNSFSHFLDQG-FMDTF 190
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H DM +S WS + R RIDYF+ S L D I ++ L +
Sbjct: 191 R--HFYPDMTDIYSWWSYRFHARDRNAGWRIDYFVASNRLADHISDSKI------LTDVF 242
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 243 GSDHCPVEL 251
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 61/327 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDEEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 202 AAG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMI 258
Query: 329 GHGIELEGFYGSDHCPVSLELSEASSD 355
G DH P+ L+++ ++D
Sbjct: 259 DSGER------RDHAPIQLDINIPAAD 279
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 60/321 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ N KK LK +WN + + VK E+ ++ +PD++ LQE
Sbjct: 42 TSSNGKKYTLKVTSWNVDGIRAWVKKKGVEW---VSEENPDILCLQE------------- 85
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V
Sbjct: 86 --------TKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEV 131
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + + +++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++
Sbjct: 132 KYGIGEE--EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKG 187
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+HEEID+ +P+ NK++ GFT ER F +
Sbjct: 188 LAARKPLILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKL 232
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L+EG +D +R L+ + F W+ + + R+DYF+VS++L++ I +++
Sbjct: 233 LEEG-FVDTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRS 290
Query: 330 HGIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L ++
Sbjct: 291 TAL------GSDHCPITLYIA 305
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 61/327 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EFE FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDKEGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 202 AAG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMI 258
Query: 329 GHGIELEGFYGSDHCPVSLELSEASSD 355
G DH P+ L+++ ++D
Sbjct: 259 DSGER------RDHAPIQLDINIPAAD 279
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 65/317 (20%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQ 95
S++ L+ V+WN N L +K + P F D DV A+QE ++ D P HQ
Sbjct: 4 SEERELRLVSWNVNGLRAVMKKD-PSFPQIFEAADADVFAIQETKLQEGQLDLDLPGYHQ 62
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
W+ A+ K Y+GTA+ ++ +P +V +
Sbjct: 63 T------------------------------WNYAERKGYSGTAVFSRE--EPLRV---I 87
Query: 155 EKTALKYEPD-GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
+ ++ D GRV EFE ++ ++ Y PN+ K R WD+ +EF+ +
Sbjct: 88 RQIGCEFADDEGRVCALEFERYWFVDVYTPNS--KNGLLRLDERMVWDRSYREFLSGLAK 145
Query: 214 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP++ CGD NV+HEEID+ +P+ +N GF+ ER+ FG +L+
Sbjct: 146 EKPVVTCGDFNVAHEEIDLKNPD---TNHMNA------------GFSDEEREGFGKLLEA 190
Query: 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
G +D++R L+ +++ D WS + R RIDYF+VSE+ D I+ +
Sbjct: 191 G-FVDSFRRLYPDRE-DAYSWWSYRMRARERNVGWRIDYFLVSEDAADGIVEASI----- 243
Query: 333 ELEGFYGSDHCPVSLEL 349
L+ YGSDHCPV L L
Sbjct: 244 -LDDVYGSDHCPVQLTL 259
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 68/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F ++ + DV +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRACVRKG---FLDYFQEVNADVFCIQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A K Y+GTA+ K+ +P VS+ + K +
Sbjct: 46 Q-----------------LEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYGVGKES-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I C
Sbjct: 85 -EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +
Sbjct: 142 GDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ + + ++W + + K R + + RIDYFIVSE +K+ I + H +
Sbjct: 186 RYLYPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERMKNVIQESAIHPHVM----- 237
Query: 338 YGSDHCPVSLELS 350
GSDHCPV LEL+
Sbjct: 238 -GSDHCPVMLELN 249
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFEAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRSYLAKLNEAKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER +F +LK G D++
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERTKFTELLKAG-FTDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + RIDYF+VS + K++I E+ E E G
Sbjct: 187 RYLYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---G 239
Query: 340 SDHCPVSLEL 349
SDHCPV+L L
Sbjct: 240 SDHCPVALYL 249
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 149/325 (45%), Gaps = 65/325 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I +DPD+IA+QE ++ A G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQLSRQVLETIDQYDPDLIAIQETKLSAKGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E + EE P + N W S A YAG +L KK +P +++
Sbjct: 58 E-------ALEEWF--------PDYNN--AWVSSVEPARKSYAGNMVLYKKSLEPI-ITY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 209
+ +GR+I +F FY Y PN G N +R R+ WD++ +++
Sbjct: 100 PKIGAPEPMDSEGRIITLDFGAFYFTQVYTPNAG-----NGLKRLAERQVWDEKYAQYLS 154
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
Q KPLI GD NV+H+EID++HPE + GFT ER F
Sbjct: 155 QLDQEKPLIATGDFNVAHKEIDLAHPE---------------NNHKSAGFTDEERSGFTK 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L +G D +R +H D++ +SW + K RIDYF+VS+ + + + E
Sbjct: 200 LLDQG-FTDTFRHIH--GDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIANAVEKSE 256
Query: 327 MQGHGIELEGFYGSDHCPVSLELSE 351
M G DH P+ LE+S+
Sbjct: 257 MIDSGTR------QDHTPIYLEISD 275
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 161/321 (50%), Gaps = 60/321 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ + KK LK +WN + + VK E+ N DPDV+ LQE
Sbjct: 52 TSSSGKKYTLKVTSWNVDGIRAWVKKKGLEWVN---KEDPDVLCLQE------------- 95
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P V
Sbjct: 96 --------TKCAEKQLPADIRDLAEYPHK----FWACSNDKEGYSGVALLSKN--KPLDV 141
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + + +++ +GRVI AEF +++L+ TY PN G + R++WD+ + ++
Sbjct: 142 TYGIGEE--EHDKEGRVITAEFSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKG 197
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI CGDLNV+H+EID+ +P+ NK++ GFT ER F +
Sbjct: 198 LAARKPLILCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEERAGFTQL 242
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L+ G +D +R L+ F W+ + + R+DYF+VS+EL++ + +++
Sbjct: 243 LEAG-FVDTFRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRS 300
Query: 330 HGIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L ++
Sbjct: 301 TAL------GSDHCPITLYVA 315
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 152/324 (46%), Gaps = 65/324 (20%)
Query: 31 TSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDA 90
T S + KK LK TWN + + +K + ++ IT D D+IALQE +
Sbjct: 93 TKSNQEGKKHNLKICTWNVSGIRAVIKKHGLDY---ITKEDADIIALQETKC-------- 141
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQP 147
D K E KL P + +Y DSK Y G AL K+ +P
Sbjct: 142 --------DKGKMPDEVKL--------PGYHHY-----FLDSKKPGYCGVALFSKE--KP 178
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V + L + ++ +GR+I EF F+++N Y PN G K + +R +W+K ++
Sbjct: 179 ISVKYGLNDST--FDTEGRIITVEFPEFFVINVYVPNAGQKLV--TLPKRLEWNKLFKKH 234
Query: 208 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ + KP+I CGD+NV+H+EID+ +P K + GFT ER
Sbjct: 235 IEELDQKKPVIICGDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERNDM 279
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
L G ID +R L+ E + F WS + + R+DYF++SE +K+++ C+
Sbjct: 280 TDFLAAG-FIDTFRSLYPEIEGAYTF-WSYFANARSKNIGWRLDYFLISERIKNKV--CD 335
Query: 327 MQGHGIELEGFYGSDHCPVSLELS 350
I + YGSDHCPV L ++
Sbjct: 336 ----NIIRKDVYGSDHCPVILYIN 355
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 63/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + EF + D+ +QE ++ + EL+
Sbjct: 1 MKLISWNVNGLRACVTKGFLEF---FKEVNADIFCIQESKLQ--------EGQIELE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK K +SF+ +
Sbjct: 47 ------------------LEGYHQYWNYAERKGYSGTAIFTKK----KPLSFTYGIGIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K++ + R KW+ ++++ KP+I C
Sbjct: 85 HDKEGRVITLEFDDFYMVTVYTPNS--KDQLARLEYRMKWENDFRDYLKSLEKNKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++F L G ID Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTEFLSAG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + WS + RIDYF VS+ LK+R+++ ++ + G
Sbjct: 187 RYFNPDKEGAYSW-WSYRFNARKNNAGWRIDYFCVSDCLKERLVSADIHTEVM------G 239
Query: 340 SDHCPVSLELSEA 352
SDHCPV L +S+
Sbjct: 240 SDHCPVELVISDV 252
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H+EID+ +P K + PGF+ ER++F L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTIFLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+++ +K + + WS + RIDYF VS+ LK+++ + + +
Sbjct: 186 FRYIYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPVS+E+
Sbjct: 239 GSDHCPVSIEI 249
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 140/316 (44%), Gaps = 64/316 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+ F+TWN N + +KNN+ EF N + D ++QE R+ P D P ++
Sbjct: 28 MNFITWNVNGIRAILKNNFYEFFN---AANADFFSVQETRVSPGEVKLDLPSDY------ 78
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
YQ W YAGTA+ K QP KV L+
Sbjct: 79 ----------------------YQYWNDAERPGYAGTAVFTKH--QPLKVMLGLDGN--D 112
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+P+GR I E+ FYL+N YAP G EE + +WD+++ FV + + KP+I
Sbjct: 113 QDPEGRAITLEYPNFYLVNVYAPAAG--EELQRLTFKEEWDQKLITFVDKLKATKPVIIN 170
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLN++HE ID+ PE E GFT AER++ +L G D Y
Sbjct: 171 GDLNIAHEPIDIYAPE---------------EHRHAAGFTDAERQQMTQLLDSG-FTDIY 214
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFY 338
R H ++ + WS + R+DYFI+S L KD I M +
Sbjct: 215 RATHPDEPNKYTW-WSYRDHARRDNHGWRLDYFIISNNLVKDVKITTIM-------DTVS 266
Query: 339 GSDHCPVSLELSEASS 354
GSDHCP+ L L+ ++
Sbjct: 267 GSDHCPLQLILNNLTT 282
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 162/336 (48%), Gaps = 62/336 (18%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
PAL D +T+ + K LK +WN + L +K + +++ PD++
Sbjct: 3 PALYEDPPDHKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILC 54
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YA 135
LQE + P QEL P ++Q W + +D + Y+
Sbjct: 55 LQETK---CSENKLPAELQEL---------------------PGLSHQYWSAPSDKEGYS 90
Query: 136 GTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ 195
G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G +
Sbjct: 91 GVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLE 144
Query: 196 RRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ NK++
Sbjct: 145 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN-- 190
Query: 255 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 314
GFT ER+ FG +L+ L D++R L+ F W+ + + R+DYF++
Sbjct: 191 -AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLL 248
Query: 315 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
S L + +++ + GSDHCP++L L+
Sbjct: 249 SHSLLPALCDSKIRSKAL------GSDHCPITLYLA 278
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 145/321 (45%), Gaps = 75/321 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
++ V+WN N L +K F + D DV ALQE ++ + D P HQ
Sbjct: 1 MRLVSWNVNGLRAVMKKG---FMDAFHELDADVFALQETKLQEGQIEMDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+WS A+ K Y+GTA+ K+ +P +V + L
Sbjct: 53 -------------------------FWSYAERKGYSGTAVFCKE--EPLRVIHEVGVPEL 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR-------IQEFVL--- 209
E GRV++ EFE ++L+N Y PN + E R WD R ++E VL
Sbjct: 86 DTE--GRVVICEFEQYWLVNVYTPNA--QSELARLDHRMAWDDRFRDICKGLEEGVLPDG 141
Query: 210 -QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ KP++ CGD NV+H+EID+ +P + + G PGF+ ER +F
Sbjct: 142 QAGNAKPVVMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERAKFTC 186
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+L G ID +R+L+ + + WS + RIDYF+VSE L++++ +
Sbjct: 187 LLDAG-FIDTFRYLNPATEGAYSW-WSYRFHARANNAGWRIDYFLVSEALREKVQMANIY 244
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
GSDHCPVS+EL
Sbjct: 245 SE------IMGSDHCPVSVEL 259
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 147/312 (47%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + E I D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKGFKESFEAI---DADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K QP V++ L +
Sbjct: 47 ------------------FDGYESYWNYAEKKGYSGTAIFTKH--QPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ + R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMENFYLVTCYTPNS--QDGLKRLEYRMRWEDDFQTYIKRLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER + L +G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGKG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++S+ L+ +++ ++ Y
Sbjct: 187 RTLYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTE------VY 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV +EL+
Sbjct: 238 GSDHCPVEVELN 249
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 146/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKH--KPLNVTYGI--GIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLGNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV ++L
Sbjct: 238 GSDHCPVEVDL 248
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ F + D D+ +QE ++
Sbjct: 4 KMISWNVNGLRACVQKG---FLEYFKEADADIFCIQESKL-------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E ++ L P + Y +W+ A K Y+GTA+ K+ +P VS+ + ++
Sbjct: 41 --QEGQIEL-------PLEGYHQYWNYAKKKGYSGTAVFSKE--EPLSVSYGI--GIEEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF+T+YL+ Y PN+ + E R W++ ++ KP+I+CG
Sbjct: 88 DQEGRVITLEFDTYYLVTVYTPNS--QNELARLPYRMTWEEAFLAYLKGLEKNKPVIFCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER++F IL+ G ID YR
Sbjct: 146 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSQILENG-FIDTYR 189
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + E++ + WS + + RIDYF VSE LKDR++ + GS
Sbjct: 190 YFYPEQEGVYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDARIHTE------ITGS 242
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 243 DHCPVELQI 251
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVG---KDFEQQFKDLNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K +P V++ ++ +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIYTKH--KPLNVTYGIDID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW++ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLITVYTPNS--QDGLRRLDYRMKWEEDFQAYLHRLDAIKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ EK +S WS + + RIDYF++SE LKDR+ ++
Sbjct: 187 RTLYPEK---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ + L
Sbjct: 238 GSDHCPIEITL 248
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K+++WN N L +K F ++ P++I LQE++M + G D
Sbjct: 3 KYISWNVNGLRACIKKG---FLDYFNEQKPNIIGLQEIKM-SEGQLDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +++ A+ K Y+GTA+ +P VS+ + ++
Sbjct: 48 -----------------LEGYYTYYNYAEKKGYSGTAIFTD--VEPISVSYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEFE +Y + Y PN+ K E R W+ + ++ + KP+I CG
Sbjct: 87 DKEGRVITAEFEDYYFVTVYTPNS--KNELERLDYRMIWEDEFRSYLKKLEEKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFTI ER +F +++ G ID +R
Sbjct: 145 DLNVAHKEIDLKNP---------------KSNTRSAGFTIEERNKFTELIENG-FIDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K + WS + RIDYF VS LKDR++ E+ + GS
Sbjct: 189 YFYPDKIHAYSW-WSYRGNARKNNTGWRIDYFCVSSSLKDRLVDAEIH------DKVEGS 241
Query: 341 DHCPVSLELS 350
DHCPV L ++
Sbjct: 242 DHCPVVLYIN 251
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+KFV+WN N L +R K F + FD D LQE+++ +N EL
Sbjct: 1 MKFVSWNVNGLRAVREKG----FEDIFKNFDADAFCLQEIKL--------QENQIELH-- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
F Y +W+ A+ K Y+GTA+ K +P V + L
Sbjct: 47 -------------------FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ + KP+I
Sbjct: 84 EHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H+EID+ +P K + PGF+ ER++F L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTMFLNSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K + + WS + RIDYF VS+ LK+++ + + +
Sbjct: 186 FRYFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPVS+E+
Sbjct: 239 GSDHCPVSIEI 249
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLDFFKEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLKL-------ELEGYHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFTELLSAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF VSE LKDR+ ++ L G
Sbjct: 187 RYFYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L+
Sbjct: 240 SDHCPVELDF 249
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 148/316 (46%), Gaps = 65/316 (20%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
+ K +KF++WN N L R + F + D D LQE +M A +
Sbjct: 5 TYKKRMKFISWNVNGL--RACDG-KGFRDAFRNLDADFFCLQETKMQAG----------Q 51
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
L D F+ Y+ +W+ A+ K Y+GTA+ K P V++ L
Sbjct: 52 LDID-------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLNVTYGLG 90
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 214
+++ +GRVI E + F+L+ Y PN+ ++E R W+ +E++L+ + K
Sbjct: 91 HE--EHDHEGRVITLEMDNFFLITVYTPNS--QDELRRLDYRMTWEDAFREYLLELNKKK 146
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I CGDLNV+H+EID+ +P K + GFT ER++ +L G
Sbjct: 147 PVIVCGDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLNAG- 190
Query: 275 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
D +RF + D+ +S WS + + RIDYF+VS L D++++ +
Sbjct: 191 FTDTFRFFN--PDLTGAYSWWSYRFRAREKNAGWRIDYFLVSNCLNDKLVSASIHNE--- 245
Query: 334 LEGFYGSDHCPVSLEL 349
+GSDHCPV + L
Sbjct: 246 ---IFGSDHCPVEIVL 258
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ + D+ +QE ++
Sbjct: 1 MKLISWNVNGLRAAVQKG---FLDYFKNENADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y +W+ A+ K Y+GTA+ KK +P +VS+ L +
Sbjct: 39 ---QEGQIEL-------DLEGYHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+E FY++ Y PN+ +EE R W+ + +V++ KP+I C
Sbjct: 85 HDKEGRVITLEYEDFYMITVYTPNS--QEELARLDYRMSWEDEFRNYVMKLDKLKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER +F +L+ G ID++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KSNRKNAGFSDEERAKFTELLENG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R + E + +S WS + RIDYF+VSE LKD + E+ +
Sbjct: 187 RHFYPE--VTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEIL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 GSDHCPVVLKL 249
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 115/238 (48%), Gaps = 32/238 (13%)
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W +D YAG + K V + L+ L E GR+I AE+E FYL+ TY
Sbjct: 422 YHAYWLSSDKDGYAGVGIYTTKLAM--NVQYGLQNEELDSE--GRIITAEYEQFYLICTY 477
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN G K S +R KW+ +E V KP+I CGD+NV+H EID+++P
Sbjct: 478 VPNAGRKLV--SLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNP------ 529
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GFT ER +L +G +D +R H EK +S+ N
Sbjct: 530 ---------KTNKKNAGFTEEERAGMTELLGDG-FVDTFRHFHPEKVAYTFWSYMANSRA 579
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 358
K G R+DYFIVSE L I ++G YGSDHCP++L L S+D K
Sbjct: 580 KNVG--WRLDYFIVSERLLPSICDSSIRGE------VYGSDHCPIALYLHLTSADKPK 629
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
LK ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 6 LKLISWNVNGLRAAVKHG---FLDVFNELDADMFCVQETKLQEGQIDLDLPGYHQ----- 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 58 -------------------------YWNYAEKKGYSGTAIFTKR--EPVAVSYGL--GIP 88
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+
Sbjct: 89 EFDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIF 146
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G D
Sbjct: 147 CGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDT 190
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR+ + +K+ + WS + RIDYF+ S+ L ++ ++ +
Sbjct: 191 YRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IF 243
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L+L+
Sbjct: 244 GSDHCPIELDLN 255
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 153/312 (49%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L + F +I DPD+I LQE+++ + D P+ H+
Sbjct: 1 MKLISWNVNGLRAVMNKG---FMEYIEQEDPDIICLQEIKLAKGQLEVDLPQYHE----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
F NY Y+GTA+ K+ +P S+ + +
Sbjct: 53 -------------------FYNYA-----ERRGYSGTAIFTKE--EPLSHSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K R+ W+ + ++L+ + KP+I C
Sbjct: 85 HDKEGRVITLEYEDFYLVTCYTPNS--KRGLLRLDYRQVWEDDFRNYLLKLNKTKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P K + GFT ER++F +L G ID +
Sbjct: 143 GDLNVAHKEIDLANP---------------KSNRRNAGFTDEERQKFTELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + D+ +SW + I K R + + RIDYF+VSE+ +DR++ + +E E
Sbjct: 187 RYFY--PDIPEMYSW-WSYITKARERNVGWRIDYFVVSEDFEDRLLDASIH---MEQE-- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -GSDHCPVVLYL 249
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 143/325 (44%), Gaps = 69/325 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ + I+ +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKISALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQI W A YAGT L + +QP V
Sbjct: 57 LQVLADL------------------FPGYQIAWRSSVEPARKGYAGTMYLYRDQYQPT-V 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 207
++ + +GR+I EF F+L Y PN+G N +R R +WD +++
Sbjct: 98 TYPQIGAPEPMDSEGRIITLEFHDFFLTEVYTPNSG-----NGLKRLADREQWDDCYRDY 152
Query: 208 VLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ Q KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHQLDEQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERSHF 197
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 324
G +L G D++RFLH E+ +SW + K RIDY++VS L DR+ +
Sbjct: 198 GQLLAAG-FTDSFRFLHPEE--AGAYSWWAQRVLTSKQNNSGWRIDYWLVSNRLADRVSS 254
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 255 SSMIDSGER------RDHTPIMLEI 273
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 69/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 5 MKLISWNVNGLRACMNKG---FMDFFNTIDADVFCIQESKM------------------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ F NY+ +W+ A+ K Y+G A+ KK K +S + +
Sbjct: 43 ----------QKEQATFDFPNYEEYWNSAEKKGYSGVAIFSKK----KPLSVAYDMGISH 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
++ +GR+I AE+ F+L+N Y PN+ K E + R +W+ + F+ L+ + KP+I
Sbjct: 89 HDKEGRIITAEYNDFFLVNVYTPNS--KRELERLEYRMEWEDDFRNFLKNLEVT-KPVIV 145
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 146 CGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FTDT 189
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R+ H ++ +SW + +GK R RIDYF+ S+ L ++ + +
Sbjct: 190 FRYFHPT--LEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPE------ 240
Query: 337 FYGSDHCPVSLELS 350
+GSDHCPV LE++
Sbjct: 241 IFGSDHCPVGLEIN 254
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 63/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N + +K F +PD+I LQE+++ + G D
Sbjct: 5 KFVSWNVNGIRAALKKG---FMESFEELNPDIIGLQEIKL-SEGQLD------------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P Y ++W+ A+ K Y+GTA+ ++ +P VS+ + ++
Sbjct: 48 ------------LEIP---GYHMYWNYAEKKGYSGTAVFTRE--EPLSVSYGI--GIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI E+ +Y + Y PN+ + R +W++ E++ + KP++ CG
Sbjct: 89 DKEGRVITLEYPEYYFITCYTPNS--QRGLARLDYRMEWEEAFLEYLNRLDEVKPVVLCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +PE N+++ GF+ ER +F +L+ G D +R
Sbjct: 147 DLNVAHNEIDLKNPE------------SNRKN---AGFSDEERDKFTKLLEAG-YTDTFR 190
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+L+ +K+ + + WS + R RIDYF+VS+ L+D+I+ + + GS
Sbjct: 191 YLYPDKEDEYSW-WSYFRQARDRNIGWRIDYFVVSKVLEDKIVEASIH------QNIMGS 243
Query: 341 DHCPVSLELS 350
DHCPVS+EL+
Sbjct: 244 DHCPVSVELN 253
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 145/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+
Sbjct: 84 EFDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G D
Sbjct: 142 CGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR+ + +K+ + WS + RIDYF+ S+ L ++ ++ +
Sbjct: 186 YRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IF 238
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L+L+
Sbjct: 239 GSDHCPIELDLN 250
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 143/312 (45%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F +F + D DVI LQE +M P D P
Sbjct: 1 MKLISWNVNGLRACIGKG---FLDFCKSADADVICLQETKMKPEQADFDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ AD Y+GTA+ + P +++
Sbjct: 49 ---------------------GYEKFWNSADKPGYSGTAVFTR--VPPLNMTYDFGGDEY 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
++E GRVI AEFE FYL+ Y PN ++E R +W+ ++++ + KP++
Sbjct: 86 RHE--GRVITAEFEEFYLVCCYTPNA--QDELRRIDYRMRWEDDFRDYLRELDRVKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + G GF+ ER + +L G D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRGHAGFSDQERGKMTELLSTG-FSDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ EK +S WS + + RIDYFIVS +++++ + +
Sbjct: 186 FRTLYPEK---IAYSWWSYRFRAREKNAGWRIDYFIVSRRFQEKVV------DSLICDQV 236
Query: 338 YGSDHCPVSLEL 349
+GSDHCPV LEL
Sbjct: 237 FGSDHCPVGLEL 248
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 64/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K N + + +PD+IALQE + D P Q
Sbjct: 59 IKIISWNVAGLRALIKKNG---HSVLVEENPDIIALQETKCV-----DVPSELQN----- 105
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLE---KT 157
Y + + ++ S + G LL K+ +P KV++S + K
Sbjct: 106 --------------------GYHTFLNASEKSGHGGVLLLTKE--EPIKVTYSFDDKSKC 143
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 216
+ GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+
Sbjct: 144 DIDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPV 201
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
++ GDLNV+H+EID+++P+ NK GFT ER F +L G +
Sbjct: 202 VYVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FV 246
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R L+ +K+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 247 DVFRRLNPDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHS 299
Query: 337 FYGSDHCPVSLEL 349
GSDHCP+SL +
Sbjct: 300 IKGSDHCPLSLTI 312
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 145/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ F + D D+ +QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFNELDADIFCVQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + KP+I+
Sbjct: 84 EFDQEGRVITLEYEKFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G D
Sbjct: 142 CGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR+ + +K+ + WS + RIDYF+ S+ L ++ ++ +
Sbjct: 186 YRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE------IF 238
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L+L+
Sbjct: 239 GSDHCPIELDLN 250
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 66/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F ++ + D+ LQE+++ + P+
Sbjct: 1 MKLISWNVNGLRAVIAKG--GFLEYLEKSNADIFCLQEIKLQSGQIDLNPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V++ L +
Sbjct: 51 ---------------------YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + KP+I+C
Sbjct: 86 HDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G ID Y
Sbjct: 144 GDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG-FIDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D + +SW + R K + R+DYF++SE LK +I ++ +
Sbjct: 188 RYLY--PDQEGAYSWWSYRMDA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM----- 239
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELHIN 251
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 148/314 (47%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ +QE +M A G D
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFQEADADIFCIQESKMQA-GQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + + +
Sbjct: 47 ------------------LEGYHQYWNYAEKKGYSGTAVFTKK--EPLSVQYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI EFE FY + Y PN+ + E R +W+ +F+ G KP+
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRIQWET---DFLAYLKGLEQKKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I+ GDLNV++ EID+ +P+ N+++ GFT ER +FG +LK G I
Sbjct: 140 IFAGDLNVAYAEIDLKNPK------------TNRKN---AGFTDEERAKFGEVLKAG-FI 183
Query: 277 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R+ + E M+ +S WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 184 DTFRYFYPE--MEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLADAKI------LT 235
Query: 336 GFYGSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 236 DVMGSDHCPIELDL 249
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 147/312 (47%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D++ LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A+ K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAEKKGYSGTAVFSKQ--KPLNVMYGIGIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE Y++ Y PN K R +W++ + F+L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENMYVMTVYTPNA--KRGLERIDYRLQWEEALLAFILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F L+ G ID++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ D++ +SW G + R R+DYF+VSE LK +I ++ +
Sbjct: 188 RYLY--PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKGQIEDAKISAQVL------ 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELTIN 251
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 151/310 (48%), Gaps = 67/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L VK F F D+ +QE ++
Sbjct: 1 MKFVSWNVNGLRACVKKG---FLAFFAETGADIFCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y +W+ A+ K Y+GTA+ KK +P V + + + +
Sbjct: 39 ---QEGQIAL-------DLDGYYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGEN--R 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ KP+I C
Sbjct: 85 TEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWENRMRAYLTDLDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ + K + G GFT ER + +L G ID++
Sbjct: 143 GDMNVAHQEIDLKNA---------------KSNIGNSGFTAEERDKMTGLLNSG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + E+ + ++W + + K R + + RIDYF+VS+ L R ++G G+ E
Sbjct: 187 RYFYPER--EGAYTWW-SYMNKVRERNIGWRIDYFLVSKRLAGR-----LKGAGMYPE-I 237
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 238 MGSDHCPVFL 247
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 145/331 (43%), Gaps = 82/331 (24%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKD 99
LK +WN N L +K + P F++ + D D++ LQE ++ + D P HQ
Sbjct: 8 ALKLASWNVNGLRAVLKKD-PSFTDIVAELDADILGLQETKLQEGQVELDLPGYHQV--- 63
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----- 153
WS A+ K Y+GTA+ ++ +P V +
Sbjct: 64 ---------------------------WSYAERKGYSGTAVFCRE--EPLSVRHADAVLA 94
Query: 154 -----------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 202
LE A+ +GRV EFE F+ ++ Y PN + E R WD
Sbjct: 95 AGRAAGLSDDELELVAVA-ATEGRVCALEFERFWFVDVYTPNA--QGELARLSTRMAWDD 151
Query: 203 RIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
+ F+ +GKP++ CGD NV+H EID+ +P K + G GF+
Sbjct: 152 AYRAFLRSLEDETGKPVVTCGDFNVAHNEIDLKNP---------------KSNRGNAGFS 196
Query: 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 318
ER +FG +L G D +R +++ +S WS + RIDYF+VS+ +
Sbjct: 197 DEERAKFGELLDAG-YTDTFR--AANPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAI 253
Query: 319 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
DR+ AC ++ +GSDHCPV+LE+
Sbjct: 254 ADRVRACGIRND------IFGSDHCPVTLEI 278
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F++ F DV+ LQE +M ++ +P +
Sbjct: 1 MKLISWNVNGFRAILGKG---FADIFEGFGADVVCLQETKMQPGQAEFSPPGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+Q W+S Y+GTA+ + +P V + + K +
Sbjct: 51 ---------------------HQYWYSAEKKGYSGTAVFTR--MEPLSVRYGIGKEEHSH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
E GR I EFE F+L+N Y PN+ + E R +W+ ++ ++ + KP+++CG
Sbjct: 88 E--GRAITLEFEQFFLVNVYTPNS--QNELARLPYRMQWEDDLRAYLCALDTEKPVVYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K++ GF+ ER++ +L G +D +R
Sbjct: 144 DLNVAHREIDLKNP---------------KQNIHSAGFSYEERQKMTDLLMSG-FVDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + WS + RIDYFIVSE L+++I G + YGS
Sbjct: 188 ALYPDAAGRYTW-WSYFRRARETNAGWRIDYFIVSERLREKI------GDALIYSDVYGS 240
Query: 341 DHCPVSLEL 349
DHCPV L L
Sbjct: 241 DHCPVGLVL 249
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 67/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M K+ + H
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKM----CKEQAQFH------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+NY+ +W+ A+ K Y+G +L K QP V++ + T
Sbjct: 47 ------------------FENYKEYWNSAEKKGYSGVVILSKT--QPINVAYDMGITY-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I AE+ FYL+N Y PN+ K E R KW+ + FV + K +I C
Sbjct: 85 HDKEGRIITAEYPHFYLVNVYTPNS--KRELERLDYRMKWEDDFRAFVKNLENHKSVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + A+L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEERNKMSALLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + + +SW + +GK R RIDYF+ S+ L + + H
Sbjct: 187 RYFYPT--LTGAYSW-WSYMGKARENNTGWRIDYFLCSQSLTPSLKDANIYPH------I 237
Query: 338 YGSDHCPVSLELSE 351
+GSDHCPV LEL +
Sbjct: 238 FGSDHCPVGLELKQ 251
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 57/320 (17%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ + K LK +WN + L +K + +++ PD++ LQE + P
Sbjct: 11 TSPSGKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETK---CSENKLPA 64
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
QEL P ++Q W + +D + Y+G LL ++C P KVS
Sbjct: 65 ELQEL---------------------PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVS 101
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 210
+ + +++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+
Sbjct: 102 YGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGL 157
Query: 211 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
S KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 158 ASRKPLVLCGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELL 202
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
+ L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 203 QAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK 261
Query: 331 GIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L L+
Sbjct: 262 AL------GSDHCPITLYLA 275
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 61/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K N+ E T D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRAVLKKNFLE---VFTDLDADFFCLQETKL-QAGQVD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + YQ W Y+GTA+ KK +P V+ L ++
Sbjct: 45 -------------LDLPDY--YQYWNYAQKKGYSGTAIFTKK--KPLAVTKGLGLA--EF 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCG 220
+ +GRV+ E+E FYL+N Y PN+ K + F R +W+ + + + KP+I CG
Sbjct: 86 DQEGRVLTLEYEDFYLVNCYTPNSQDKLKRLDF--RLQWEAAFSDHLTNLATKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P+ PN+++ GF+I ER+ A+L G D +R
Sbjct: 144 DLNVAHNEIDLKNPK------------PNQKN---AGFSIQERQAMTALLARG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
++ +K + WS + R RIDYFI S L ++ ++ L GS
Sbjct: 188 HIYLDKTGAYSW-WSYRFNARARNAGWRIDYFICSNALLPQVKDSQI------LPEILGS 240
Query: 341 DHCPVSLELSE 351
DHCPV LE +E
Sbjct: 241 DHCPVMLETNE 251
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F D D LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELDADAFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P V++ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--IRPLSVNYGIGTP--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI EF YL+ Y PN+ K R W+ + F+L KP++ CG
Sbjct: 86 DHEGRVITMEFADVYLVTVYTPNS--KNALARLDYRMVWEDAFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ D+ ++ WS + RIDYF+VSEEL++RI A E+ +G
Sbjct: 188 ALY--PDVTGAYTWWSYLRHARETNAGWRIDYFLVSEELRERIAAAEIHAD------VFG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 139/309 (44%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + DV LQE +M
Sbjct: 1 MRFVSWNVNGLRAALKKG---FMESFKELNADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E + I L P ++ Y ++S Y+GTA+ + +P VS+ + ++
Sbjct: 39 ---QEGQAI----LDLPGYEQY--FYSAEKKGYSGTAIFTR--VKPLSVSYGIGIE--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E YL+ Y PN K R W+ + F+L KP++ CG
Sbjct: 86 DNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +FG +L G +D +R
Sbjct: 144 DLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ + WS + RIDYF+VS EL+DRI A E+ +GS
Sbjct: 188 ALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHSD------IFGS 240
Query: 341 DHCPVSLEL 349
DHCPVSL L
Sbjct: 241 DHCPVSLTL 249
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + F ++ D D+ +QE SK P EL+ D
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQE-------SKVQP-GQIELELD-- 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ + +P V + ++
Sbjct: 50 -------------------GYHQYWNYAERKGYSGTAVFTR--IKPLYVQNGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I CG
Sbjct: 87 DREGRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +PE N+ GFT ER +F +L G ID +R
Sbjct: 145 DMNVAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
F + +K + WS + R RIDYF VSEELKDR+++ + + GS
Sbjct: 189 FFYPDKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGS 241
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 242 DHCPVELQI 250
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 142/312 (45%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F D D+ LQE + K
Sbjct: 1 MKLISWNVNGIRACIGKG---FEESFAALDADIFCLQETKCQQGQVK------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ + Y+GTA+ KK +P V + + K
Sbjct: 45 -------------LELPGYYQY---WNYANRRGYSGTAVFTKK--EPLSVVYGI--GIEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ + E + R W++ ++L+ KP+I C
Sbjct: 85 HDKEGRVITLEYEKFYLVTVYTPNS--QSELRRLEYRMHWEEDFLAYLLKLQESKPVICC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+EID+ +P K + GFT ER FG +L+ G ID +
Sbjct: 143 GDFNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFGKVLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + + RIDYFI S +LKD++ E+
Sbjct: 187 RYFY--PDVEGRYSWWSYRFKAREKNAGWRIDYFITSPQLKDKLKGAEIHSE------IM 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV L+++
Sbjct: 239 GSDHCPVELQIT 250
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 142/312 (45%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVTKG---FKESFAEIDADFFCLQETKMQA-GQLDIA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P VS+ L +
Sbjct: 47 ------------------FDGYESYWNYADKKGYSGTAIFTKH--KPLSVSYGLGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN ++ R +W+ Q +V + KP+I C
Sbjct: 85 HDHEGRVITLEMEKFYLVTCYTPNA--QDGLKRLDYRMQWEDDFQAYVKRLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER + L G ID++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGNG-FIDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++S L+++++ ++ Y
Sbjct: 187 RTLYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTE------VY 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV +EL+
Sbjct: 238 GSDHCPVEVELN 249
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 143/310 (46%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ A G D
Sbjct: 3 KMISWNVNGLRACVGKG---FLDVFRKLDADIFCIQESKLQA-GQID------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y WS AD K Y+GTAL K+ +P V + L A +
Sbjct: 46 ------------LDIPGYYQY---WSYADKKGYSGTALFSKE--EPISVVYGLGIDAHDH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
E GRVI AE+E +Y+L Y PN+ + E R +W+ ++ + KP+I+CG
Sbjct: 89 E--GRVITAEYEDYYVLTCYTPNS--QNELARLPYRMEWEDAFLAYLKKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P N+++ GFT ER +F A+L G ID YR
Sbjct: 145 DLNVAHREIDLKNPR------------TNRKN---AGFTDEERGKFSALLDAG-FIDTYR 188
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
H D + +S WS + + RIDYF VSE L+DR+++ + G
Sbjct: 189 --HFYPDTEGVYSWWSYRFKAREKNAGWRIDYFCVSESLEDRLVSASIHTE------IMG 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELVI 250
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 165/344 (47%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAAGEGSVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL LS +Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQELS---------------GLS------HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V F ++ D D+ LQE ++ QE + +
Sbjct: 1 MKLVSWNVNGLRACVGKG---FLDYFKEADADIFCLQETKL------------QEGQIEL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E Y+ +W+ A+ K Y+GTA+ + +P V + +E+
Sbjct: 46 DLGSE----------------YEQYWNYAEKKGYSGTAVFTR--IKPLSVRYGMEE---D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
YEP+GR+I EFE FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 YEPEGRIITLEFEQFYLVTVYTPNA--KRDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H ID+ + K + G G+T+ ER + +L G ID +
Sbjct: 143 GDLNVAHNPIDIKNA---------------KSNEGNSGYTLEERGKMTELLASG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +++ + WS P + R RIDYF+ S L A ++Q GI+ G
Sbjct: 187 RHFYPDREGVYSW-WSYMPKIRERNIGWRIDYFLASSRL-----APKLQDAGIDCH-ILG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL +
Sbjct: 240 SDHCPVSLTV 249
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F + D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALNADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+S P + +Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------ISFPGYASY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q+++ + KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQDYLHRLDRKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV ++L
Sbjct: 238 GSDHCPVEVDL 248
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F + D D+ LQE + A EL
Sbjct: 1 MKLISWNVNGIRACLKKG---FMEYFQAQDADIFCLQETKCSAG--------QVEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ KK +P VS+ L +
Sbjct: 46 -----------------DLKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + KP++ C
Sbjct: 85 HDQEGRVICLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRNYLSKLNEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER +F +L+ G D++
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERNKFTELLQAG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ D +S WS + RIDYF+VS + K++I E+ E E
Sbjct: 187 RYLY--PDTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE--- 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV+L L
Sbjct: 239 GSDHCPVALYL 249
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + V+ F F D D+ +QE +M
Sbjct: 1 MKFVSWNVNGIRACVQKG---FMEFFQEADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L +P + Y W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEGQL----ELETPGYHQY---WNYAKKKGYSGTAIFTKQ--EPISVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE +Y + Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEDYYFITVYTPNS--QNELARLPYRMQWEDDFLAYLKKLEEAKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +++ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTSLVDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D +S WS + + RIDYF VSE L++R++ ++ L
Sbjct: 187 RYFY--PDAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKI------LTDVM 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ LE+
Sbjct: 239 GSDHCPIVLEM 249
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 148/312 (47%), Gaps = 69/312 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +TWN N L + F++F+T D++ +QE +M
Sbjct: 1 MKLITWNVNGLRACMNKG---FADFMTAAGADIVCVQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R +S F Y +W+ A K Y+GTA+ K +P V++ L + +
Sbjct: 39 ----------QREQASFDFPGYHEYWNSAVKKGYSGTAVFSKT--EPLSVTYGLGQE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI AE+ FYL+N Y PN+ + + R +W+ Q++ C+G KP+
Sbjct: 85 HDQEGRVITAEYPDFYLVNVYTPNS--QRGLTRLEYRMQWEDVFQDY---CAGLARKKPV 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGDLNV+ + ID+ +P+ N ++ GFT ER +F L G +
Sbjct: 140 IVCGDLNVAAQPIDLKNPD------------SNHKN---AGFTDEERAKFQQFLDHG-FV 183
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D++R L+ +K+ + WS + R RIDYF+VS+ KDRI + +
Sbjct: 184 DSFRSLYPDKEGAYTW-WSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVM---- 238
Query: 337 FYGSDHCPVSLE 348
GSDHCPV LE
Sbjct: 239 --GSDHCPVELE 248
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 146/323 (45%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F NY W A YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSL-EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
GKP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKGKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 327
LK G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 201 LKLG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 258 IDTGER------KDHCPIMLEIN 274
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 147/311 (47%), Gaps = 69/311 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + + D LQE ++ HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FLDSFKNLNADCFCLQETKLQP---------HQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + YQ W S Y+GTAL K +P VS+ + ++
Sbjct: 46 -----------IELDIPGY--YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I AEF+ +L+ Y PN+ + + + R KW+ + ++L+ + KP+I CG
Sbjct: 89 DQEGRLITAEFKNHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+++P + GFT ERK+F +L+ G D +R
Sbjct: 147 DLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDTFR 190
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEG 336
+L+ +K D WS + R RIDYF+VS++LK++I I E+Q
Sbjct: 191 YLYPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQ-------- 241
Query: 337 FYGSDHCPVSL 347
GSDHCPV L
Sbjct: 242 --GSDHCPVEL 250
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + F ++ D D+ +QE SK P EL+ D
Sbjct: 3 KLISWNVNGLRACINKG---FLDYFKKADADIFCIQE-------SKVQP-GQIELELD-- 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ + +P V + ++
Sbjct: 50 -------------------GYHQYWNYAERKGYSGTAVFTR--IKPLCVQNGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I CG
Sbjct: 87 DREGRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +PE N+ GFT ER +F +L G ID +R
Sbjct: 145 DMNVAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
F + +K + WS + R RIDYF VSEELKDR+++ + + GS
Sbjct: 189 FFYPDKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGS 241
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 242 DHCPVELQI 250
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 142/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V EF D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRACVG---KEFEQQFKDLDADFFCLQETKMQA-GQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 47 ------------------FLGYESYWNYADKKGYSGTAIFTKH--KPLSVTYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE LKDR+ ++
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV + L
Sbjct: 238 GSDHCPVEIIL 248
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F F D DV ALQE +M A
Sbjct: 1 MKFVSWNVNGLRAVMKKG---FKEFFERVDADVFALQETKMQAD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ S F+ Y + + A+ K Y+GT + K+ +P V + +E
Sbjct: 42 -----------QITSEMEFEGYYRYMNSAERKGYSGTMVYCKE--EPISVQYDIEGDT-- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+GRVI E+ +Y + Y PN+ KE R +W+ R+++ + + KP+I+
Sbjct: 87 -SMEGRVITLEYPNYYFVTAYVPNS--KEGLARLGFRMEWEDRLRDHLNRLKEVKPVIYT 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ + PGF+ ER++ +L +G ID++
Sbjct: 144 GDLNVAHEEIDLKNPQ---------------SNHKNPGFSDEERQKMTELLADG-YIDSF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ + + +S WS + R RIDYFIVSE LK+++ + + +
Sbjct: 188 RYLYPK---EVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKV------KNALIDDEVK 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ LE+
Sbjct: 239 GSDHCPIELEM 249
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 146/336 (43%), Gaps = 82/336 (24%)
Query: 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNH 94
N+ LK +WN N L +K + P F++ ++ D D++ LQE ++ + D P H
Sbjct: 3 NTASRTLKLASWNVNGLRAVLKKD-PSFTDIVSELDADILGLQETKLQEGQVEIDLPGYH 61
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 153
Q WS A+ K Y+GTA+ + +P V +
Sbjct: 62 QV------------------------------WSYAERKGYSGTAVFTRD--EPLSVRHA 89
Query: 154 ----------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
LE A+ +GRV EFE F+ ++ Y PN + E R
Sbjct: 90 DAVLAAGRAAGLTDDQLELVAVA-ATEGRVCALEFERFWFVDVYTPNA--QGELARLDTR 146
Query: 198 RKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254
WD + F+L +GKP++ CGD NV+H EID+ +P K + G
Sbjct: 147 MAWDDAYRAFLLSLEDETGKPVVTCGDFNVAHNEIDLKNP---------------KSNRG 191
Query: 255 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFI 313
GF+ ER +F +L G D +R D++ +S WS + RIDYF+
Sbjct: 192 NAGFSDEERSKFVELLDAG-YTDTFR--AANPDLEGAYSWWSYRFNARKNNAGWRIDYFL 248
Query: 314 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
VS+ + DR+ A ++ +GSDHCPV+LE+
Sbjct: 249 VSDSIADRVRATGIRSD------IFGSDHCPVTLEI 278
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 147/323 (45%), Gaps = 73/323 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+KF++WN N L VK + F + D D LQE ++ AG D
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKL-QAGQIDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
F YQ +W+ A+ K Y+GTA+ + +P V++
Sbjct: 58 --------------------------FDGYQSYWNYAEKKGYSGTAVFTRH--EPLGVTY 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFV 208
+ K +++ +GRVI E+ FYL+ Y PN+ + + R W+ +E++
Sbjct: 90 GIGKE--EHDHEGRVITLEYPDFYLITCYTPNSQDTIKGELKPRRLGYRMTWEDDFREYM 147
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
++ KP+I CGDLNV+HEE+D+ +P K + GFT ER++
Sbjct: 148 MRLDKNKPVIMCGDLNVAHEEMDLKNP---------------KTNHNNAGFTDEEREKMT 192
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G +D++R L+ E+ +S WS + + RIDYFI S+ L+DRI +
Sbjct: 193 TLLGSG-FLDSFRMLYPEQ---VTYSWWSYRMRAREKNTGWRIDYFITSDRLRDRIADAK 248
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
+ GSDHCPV L+L
Sbjct: 249 IHTE------IMGSDHCPVELDL 265
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 57/320 (17%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
S + + LK +WN + L VK + +++ PD++ LQE + A SK P
Sbjct: 55 SSSSGQPATLKICSWNVDGLRAWVKK---KGLDWVREEAPDILCLQETK--CAESKLPP- 108
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
ELKD LS P ++ W + AD + Y+G LL ++ +P VS
Sbjct: 109 ---ELKD---------------LSDFP---HRYWAAPADKEGYSGVGLLSRR--RPLSVS 145
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQ 210
+ + + +++ +GRVI+AEFE F L+ Y PN+G R++WD+ + F+ Q
Sbjct: 146 YGIGEE--EHDQEGRVIVAEFEAFVLVTVYVPNSG--RGLVRLDYRQRWDQAFRRFLQAQ 201
Query: 211 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KPL+ CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L
Sbjct: 202 AARKPLVLCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELL 246
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
L D++R L+ F W+ + + R+DYF++S L + +++
Sbjct: 247 GTVDLADSFRHLYPAAAYAYTF-WTYMMNARSKNVGWRLDYFLLSRALLPSLCDSKIRSA 305
Query: 331 GIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L L+
Sbjct: 306 AL------GSDHCPITLYLA 319
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ERK+F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFNELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 145/327 (44%), Gaps = 61/327 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +S+ + I PDVIA+QE ++ +G K HQ
Sbjct: 1 MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ + F Y + W A YAGT L K+ PK V+
Sbjct: 58 ------------------GVLAELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ FYL Y PN+G + R++WD R +E++ +
Sbjct: 99 YPTIGAPEPMDEEGRIITLEFKNFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HP + GFT ER++F A+L
Sbjct: 157 DRQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R LH D +SW K RIDY++VS+ L D++++ M
Sbjct: 202 AAG-FTDSFRSLH--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMI 258
Query: 329 GHGIELEGFYGSDHCPVSLELSEASSD 355
G DH P+ L+++ ++D
Sbjct: 259 DSGER------RDHAPIQLDINIPAAD 279
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 187 RYFY--PDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------E 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVVLFL 249
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N F D D LQE +M
Sbjct: 1 MKFISWNVNGLRACVGKN---FKEDFAALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F Y+ +W+ AD K Y+GTA+ K +P V+ + +
Sbjct: 39 ---QEGQLDL-------SFPGYESYWNYADKKGYSGTAIFTKH--KPLTVTTGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDELKRLAYRMQWETDFQAYLHKLDEHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GF+ ER++ +L G D +
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNHHNAGFSDEEREKMTILLNNG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ E+ +S WS + + RIDYF++S L+DR+ ++ +
Sbjct: 187 RYLYPEQ---VTYSWWSYRFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTE------IF 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 238 GSDHCPVELTL 248
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 149/345 (43%), Gaps = 99/345 (28%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L VK F + D D+IALQE ++ QE + D
Sbjct: 1 MRFVSWNVNGLRAAVKKG---FEESVAALDADIIALQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P + + WS A+ K Y+GTA+ ++ +P + L +AL
Sbjct: 45 -------------LSLPGYFQF---WSYAERKGYSGTAVFCRQ--KPLRALHGLGDSAL- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF------------- 207
+ +GR++ EF+ ++ ++ Y PN + E R WD ++F
Sbjct: 86 -DDEGRIVALEFDDYWFVDVYTPNA--QNELARIDHRMAWDDAFRDFCKNLEKGAIPAGV 142
Query: 208 -VLQC---------------------SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
V C S KP++ CGD NV+H+EID+ +P
Sbjct: 143 AVQDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVAHQEIDLKNP----------- 191
Query: 246 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRG 304
PN+ G GF+ ER++F +L G +D +R LH D +S WS +
Sbjct: 192 -GPNR---GNAGFSDEEREKFTRLLDAG-FVDTFRVLH--PDEAGAYSWWSYRFNARKNN 244
Query: 305 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RIDYF+VSE L+D I M GSDHCPVS+EL
Sbjct: 245 AGWRIDYFLVSESLRDAIHDARMHAD------IMGSDHCPVSVEL 283
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 68/327 (20%)
Query: 29 TETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK 88
T +S + +K K VTWN N + +KN E+ I D DV LQE
Sbjct: 82 TRIASSDYGRKGSWKIVTWNVNGIRSWLKNGGLEY---IEEEDADVYCLQE--------- 129
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPP----FKNYQIWWSLADSK-YAGTALLVKK 143
TK S EEKL PP +K Y+ ++ D + Y+G ++ +K
Sbjct: 130 ------------TKCS-EEKL--------PPEVTNYKGYKSYFLAGDKEGYSGVGIMSRK 168
Query: 144 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 203
+ SLE+ ++ +GRVI EFE F+L+N+Y PN G R WD+
Sbjct: 169 TPLNVEYGLSLEE----HDSEGRVITLEFEEFFLVNSYVPNAG--RGLVRLDYRLTWDRD 222
Query: 204 IQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 262
+++++ K +I GDLNV+H EID+ +P+ NK++ GFT E
Sbjct: 223 FRKYLVGLKKKKSVILTGDLNVAHNEIDLKNPK------------TNKKN---AGFTEEE 267
Query: 263 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 322
R+ +L+EG +D +R L+ E++ F W+ + + R+DYFIVSE+L D +
Sbjct: 268 RQGLTDLLEEG-FVDTFRKLYPEREGAYTF-WTYMMNARAKNVGWRLDYFIVSEDLIDNV 325
Query: 323 IACEMQGHGIELEGFYGSDHCPVSLEL 349
I E++ GSDHCPV L L
Sbjct: 326 IDNEIRST------VMGSDHCPVVLHL 346
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L + F D D+ ++QE +M P D P
Sbjct: 1 MKLISWNVNGLRACLGKG---FLESFAALDADIFSIQETKMQPGQAELDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A+ K Y+GTA+ + +P V++ +
Sbjct: 49 ---------------------GYKQYWNSAEKKGYSGTAVFTR--LEPLNVTYGIGSE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GR I EFE FYL+N Y PN + E R +W+ ++ ++L+ S KP+I+
Sbjct: 84 EHDREGRAITLEFEDFYLVNCYVPNA--QRELTRLDWRMEWEDALRAYLLELDSRKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + K + G GFT ER + +L+ G +D+
Sbjct: 142 CGDLNVAHQEIDLKNA---------------KSNRGNAGFTDEERAKMTQLLEAG-FVDS 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ +K + WS + + RIDYF+VS+ + D+I G I
Sbjct: 186 FRHLYPDKTGAYSW-WSYMFHAREKNAGWRIDYFLVSKSIADKI------GDSIIHPEIM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 144/316 (45%), Gaps = 73/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L + F +F D D+ LQE +M ++
Sbjct: 1 MKFVSWNVNGLRACLNKG---FLDFFREADADIFCLQETKMQEGQAE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 45 -------------LDLPGYLQY---WNSAEKKGYSGTAVFTKK--EPLSVCYDIRHP--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GR I EFE+FYL+N Y PN+ + E R +W+ +E+V Q KP+I C
Sbjct: 85 HTGEGRAITLEFESFYLVNVYTPNS--QRELVRLPYRMEWENAFREYVTQLDEKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GF+ ER + +L G +D++
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNIGNAGFSYEERGKLTELLASG-FLDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIEL 334
R L+ D+ ++W + RIDYF++SE L+ D +I E+Q
Sbjct: 187 RELY--PDLTGAYTWWSYMFKARQNNAGWRIDYFLISERLREKLSDSLIYSEVQ------ 238
Query: 335 EGFYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 239 ----GSDHCPVGLILT 250
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 158/338 (46%), Gaps = 61/338 (18%)
Query: 19 LSPSKKDGETTETSSEENS-KKDP---LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDV 74
LSP+KK T S ENS KKD LKF++WN NSL ++ + N ++ DPD
Sbjct: 21 LSPTKKKNCTQLDSITENSPKKDTETLLKFLSWNVNSLKRVLERK--QLVNLVSQEDPDF 78
Query: 75 IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK- 133
I LQE ++ E+K+ A P +K + ++ ++K
Sbjct: 79 ICLQETKLT----------------------EDKV--PGAFLLPQYKKF---FNCCETKR 111
Query: 134 -YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192
Y+GTAL K P V E ++ GR+I+AE+E FY+ + Y PN+G K +
Sbjct: 112 GYSGTALFSK--MAPIAVLKDFEGVYSEHNKTGRLIVAEYENFYVASVYVPNSGDKLKNL 169
Query: 193 SFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 251
+ R WD ++ + KP++ GDLNV+H++IDV PE +
Sbjct: 170 EY-RVHSWDPSFCSYICELQMKKPIVLLGDLNVAHQDIDVYAPERLGS------------ 216
Query: 252 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 311
+ GF +ER F L+E +++D++R+L+ + F W G+ R + RIDY
Sbjct: 217 ---KAGFVQSERNNFSKFLEETKMVDSFRYLYPHRKEAYSF-WDYKTGGRLRNQGWRIDY 272
Query: 312 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
++S L L+ GSDHCP+ +++
Sbjct: 273 CLLSSSLV------SNLVDAFILDKIEGSDHCPIGIQM 304
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P++V + + +
Sbjct: 51 ---------------------YHMYWNYAVKKGYSGTAVFSKQ--EPQRVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENMFVMTVYTPNA--KRGLERIDYRMQWEEDLLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F L+ G ID++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LKD+I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKDQIEDASISADVM------ 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELMIN 251
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 150/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+EL+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLFL 249
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + V F +F D D+ LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGIRACVTKG---FLDFFNEVDADIFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ +P V++ ++
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKQ--EPISVNYGIQIE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EF+ FY + Y PN+ + E R KW+ ++++L+ S K +I
Sbjct: 84 EHDKEGRVITLEFDNFYFVTVYTPNS--QSELKRLDYRMKWEDDFRKYLLKLNSKKGVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER++F +L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKFTELLESG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR + +K+ + WS + + RIDYF S++L++ +++ ++ +
Sbjct: 186 YRHFNPDKEGIYSW-WSYRFKAREKNAGWRIDYFCASKDLENNLVSADIHTQIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCP+ L
Sbjct: 239 GSDHCPIEL 247
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 60/321 (18%)
Query: 34 EENSKKDPLKF--VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
EE + P F +WN + L V+ ++ + + PDV+ LQE + G++ P
Sbjct: 35 EETADGRPYNFKVTSWNVDGLRAWVRKGGLQW---LQSEAPDVVCLQETK---CGAESIP 88
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS-LADSKYAGTALLVKKCFQPKKV 150
LS P ++ W S + S Y+G LL + P +V
Sbjct: 89 SE---------------------LSQLPHLPHKFWGSAVGRSGYSGVGLLSRTA--PIRV 125
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
+ + +++ +GRV+ AEF + Y+++ Y PN+G N Q R++WD + F+ +
Sbjct: 126 THGIGIE--EHDAEGRVLTAEFPSVYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQR 181
Query: 211 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP++ CGDLNV+H EID+ +P K + PGFT ER FGA+
Sbjct: 182 LDAQKPVVLCGDLNVAHREIDLRNP---------------KSNRRSPGFTQEERDAFGAL 226
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L +G +D++R L+ + F W+ + R R+DYF++S L++ + +++
Sbjct: 227 L-DGGFLDSFRLLYPDVPNAYTF-WTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRS 284
Query: 330 HGIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L L+
Sbjct: 285 AAM------GSDHCPITLYLA 299
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLIL 249
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 35/235 (14%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 40 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 95
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 237
Y PN+ K R KW+ + ++ + K +I+CGDLNV+H+EID+ +P
Sbjct: 96 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKTVIFCGDLNVAHKEIDLKNP--- 150
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
K + PGF+ ER++F IL+EG +D YR+L+ + + +SW
Sbjct: 151 ------------KSNRKNPGFSDEEREKFTCILEEG-FVDTYRYLY--PNQEGAYSWWSY 195
Query: 298 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 196 RMGA-RAKNIGWRLDYFVVSERMKDQITEVKINSEVM------GSDHCPVELYIN 243
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 150/307 (48%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FIDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LEGYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + KP+I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRSYLNELNKAKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER++FG +LK G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K+ + WS + RIDYF+VS++ +DR++ ++ IE GS
Sbjct: 189 YFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDAKIHTQ-IE-----GS 241
Query: 341 DHCPVSL 347
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + E+ +T D DVI LQEV+
Sbjct: 1 MKLVSWNVNGIRACMDKGLREY---LTACDADVICLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L FK+YQ+ W+ A K Y+GTA+L ++ + + +++
Sbjct: 38 --AMEEQAGL------EWFKDYQVVWNAAQKKGYSGTAILTRQPIKSHAIGMGIDE---- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF +Y++N Y PN + E R WD + ++ KP++ C
Sbjct: 86 HDKEGRVITVEFPDYYVVNVYTPNA--QAELARLPYRLLWDDAFRLYLKNLEQTKPVLAC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID++ P KE+ PGF+ ER FG +L+ G +D +
Sbjct: 144 GDLNVAHNEIDIARP---------------KENRFSPGFSDQERASFGKLLESG-FVDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R +S+ N G G RIDY++ S+ LKD + + I +G
Sbjct: 188 RHFDSRPHQYSWWSYRANARGNNVG--WRIDYWLASQGLKDGLKS------SIIRPDIHG 239
Query: 340 SDHCPVSLELS 350
SDHCPV L +
Sbjct: 240 SDHCPVELVMG 250
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLIL 249
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I + D DVI LQE ++P G K HQ
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSRDVLKTIISEDADVICLQETKLPRTG---PSKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ F +Y W A YAG L KK Q K ++
Sbjct: 58 KILEEY------------------FPSYDYAWVSSQEPARKSYAGCLTLYKKNLQTK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + + + R+I EFE FYL Y PN G N R+ WD++ ++
Sbjct: 99 FPVLDAPDTMDQEARIITLEFEKFYLTQVYTPNAG--NGLNRLGLRQIWDEKFANYLENL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K +I CGD NV+H+EID+ HPE N E GFT ER F +L
Sbjct: 157 DKNKAVIACGDFNVAHKEIDLKHPE------------NNHE---SAGFTDEERNGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G +D +R++H D++ ++W + K RIDYFIVS+ +KD+I M
Sbjct: 202 NKG-FVDTFRYIH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKDKIKESNMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L +
Sbjct: 259 DSGDR------QDHTPIYLSI 273
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER++ L G D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E+ +S WS + + RIDYF++S L+DR++ ++ Y
Sbjct: 187 RYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VY 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 238 GSDHCPVELDL 248
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 3 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 46 ------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CG
Sbjct: 87 DNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYVLKLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + IL G +D++R
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVDSFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ +
Sbjct: 189 VLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL------ 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 240 GSDHCPVELDI 250
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 141/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F +F+ PD + +QE ++ QE + D
Sbjct: 1 MKFISWNVNGLRACVKKG---FLDFVEAEQPDFLCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ YQ W Y+GTA+ K +P +V++ L ++
Sbjct: 46 QLD----------------GYYQYWNYAVKKGYSGTAIFTKH--EPLQVTYGL--NIAEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+ FYL+ Y PN+ + E R W++ + +++ KP+I CG
Sbjct: 86 DQEGRVITLEYNDFYLVTVYTPNS--QNELARLDYRLTWEEAFRNYLIGLDVLKPVIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H++ID+ +P K + GFTI ER +L G ID +R
Sbjct: 144 DLNVAHQQIDLKNP---------------KTNTKNAGFTIEERNEMTKLLNSG-FIDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + K+ +C WS + + RIDYFI S+ L+ R+ + + GS
Sbjct: 188 YFYPTKE-NCYSWWSYRAGARAKNVGWRIDYFITSKALESRLEDARIYPDVL------GS 240
Query: 341 DHCPVSLEL 349
DHCPV L+L
Sbjct: 241 DHCPVGLQL 249
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L V F D D LQE +M
Sbjct: 1 MRFISWNVNGLRACVSKG---FEESFKALDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K +P V++ L +
Sbjct: 39 ---QEGQLNLQ-------FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLITVYTPNS--QDELRRLNYRMTWEDDFLKYIQGLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER++ L G D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E+ +S WS + + RIDYF++S L+DR++ ++ Y
Sbjct: 187 RYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VY 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 238 GSDHCPVELDL 248
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 146/311 (46%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V+ F ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVQKG---FLDYFHEMGADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+NY +W+ A K Y+GTA+ K +P VS+ L +
Sbjct: 46 N-----------------LENYNQYWNYAAKKGYSGTAVFTK--IKPISVSYGLGEHMED 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I EF +FYL+N Y PN+ + + R +W+ I+ ++L+ KP+I C
Sbjct: 87 HE--GRAITLEFPSFYLVNVYTPNS--QRDLARLSYRLEWEDNIRNYLLELDKVKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + K + G GFT ER++ +L G +D++
Sbjct: 143 GDLNVAHQEIDLKNY---------------KTNRGNSGFTDEEREKMTRLLDSG-FVDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ +K D WS + R RIDYFI+S+ L II ++ G
Sbjct: 187 RYLYPDKG-DVYSWWSYMNKVRERNIGWRIDYFILSKGLSSSIIDSQIHTE------IMG 239
Query: 340 SDHCPVSLELS 350
SDHCPV LEL+
Sbjct: 240 SDHCPVCLELN 250
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 140/312 (44%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ ++ +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIQNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 219
+E GRVI E+ +FYL+ Y+PN+ K + F R D + KP+I C
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF-RMGFEDAFLNYLNALKEKKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GF+ ER +L+ G L D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNHKNAGFSNEERSCMTRLLENGYL-DTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
RF H ++ + WS + RIDYFIVSE LKD + E+ L G
Sbjct: 187 RFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMG 239
Query: 340 SDHCPVSLELSE 351
SDHCPV LE ++
Sbjct: 240 SDHCPVLLETAD 251
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYFIVS+ L ++ E+
Sbjct: 187 RYFY--PDLEHAYSWWSYRANARKNNTGWRIDYFIVSKALDKYLVDAEIHAQT------E 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVVLFL 249
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 143/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F D+ LQE ++ A
Sbjct: 1 MKLISWNVNGIRACLNKG---FMDFFEKEQADIFCLQETKIQA----------------- 40
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
PF+ Y +W+ A K Y+GTA+ K+ +P KV++ + K
Sbjct: 41 --------------DQIPFQLEGYHQYWNYAQKKGYSGTAVFTKQ--EPLKVTYGIGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+++ +GRVI EFE FYL+ Y PN+ + + R W++ F+ KP+I
Sbjct: 84 -EHDQEGRVITLEFEGFYLVTVYTPNS--QRGLARLEYRMTWEEEFLSFLKNLEQAKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLN++H EID+ +P K + GF+ ER +FG +LK+G ID
Sbjct: 141 FCGDLNMAHTEIDLKNP---------------KTNRKNAGFSDEERAKFGELLKKG-FID 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + +K + WS + RIDYF VSE LKD++ + +
Sbjct: 185 TFRYFYPDK-TEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQLRDAVIYSEIL----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 239 -GSDHCPVGLEI 249
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 61/311 (19%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
+D K ++WN N L KN F + + D D++ALQE+ K H +
Sbjct: 227 RDERKLISWNVNGLRAVAKNG---FLDVLHELDADILALQEI-----------KAHPDQL 272
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
DD +R +S YQ +W A K YAGTA+ K P +V + +E+
Sbjct: 273 DDQ----------LRNVSG-----YQSFWHSAKKKGYAGTAVFSK--IPPLRVLYGMEQP 315
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 216
+++ +GRV+ E+ FYL+NTY+PN + E ++++++ + ++ + S K +
Sbjct: 316 --QFDDEGRVLTLEYPDFYLINTYSPNA--QPELKRLAFKQEFNRTLLAYMDRLRSEKTV 371
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
+ CGDLNV+H+EID+++P K + PGF+ ER ++ G +
Sbjct: 372 VLCGDLNVAHKEIDLANP---------------KANVKNPGFSEQERAWMDELIAAG-YV 415
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R ++E +S+ N K G RIDYFIV +DR++ + G
Sbjct: 416 DTFRQFNQEAGQYTWWSYRFNARAKNIG--WRIDYFIVDGSSRDRVLEAAIHGE------ 467
Query: 337 FYGSDHCPVSL 347
GSDHCPVSL
Sbjct: 468 ITGSDHCPVSL 478
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 150/321 (46%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL + ++ + + I D D+IALQE ++PA G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSARAKLSRDVLDTIKNEDADIIALQETKLPATGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWW-SLADS---KYAGTALLVKKCFQPKKVS 151
E KL F +Y +W S DS YAGT L KK + K+ S
Sbjct: 58 E-----------KLFEF-------FPDYDYFWVSSRDSARKSYAGTMTLYKKGLKVKE-S 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR++ E + +Y + Y PN G E N R WD + +++ +
Sbjct: 99 FPEIGAPDTMDLEGRILTLELDDYYFVQVYTPNAG--GELNRLPLREIWDLKFADYLEEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HPE N ++ GFT ER+ F +L
Sbjct: 157 DKIKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R+L+ KD++ ++W + K RIDYF+VS+ L D++ M
Sbjct: 202 NRG-FTDSFRYLN--KDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLIDKVKDSTMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGQR------QDHTPIMLEI 273
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 149/319 (46%), Gaps = 59/319 (18%)
Query: 43 KFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
KF++WN +SL + + + I +D D+IA+QE ++PA G H E
Sbjct: 3 KFISWNIDSLNAALTSTSARAVMSQDVLRKIAAYDADIIAIQETKLPAEGPS---ATHVE 59
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEK 156
L + + S PP A YAGT +L K+ + +K+ L
Sbjct: 60 LLKSYFTGYHFEWVS----SVPP----------AKKGYAGTMILYKEGLKAEKIVPKLGA 105
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
+ +GR+I EF+ FY +N Y PN+G + + R+ WD +++ K
Sbjct: 106 PD-TMDDEGRLIALEFDNFYFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLDQKKA 162
Query: 216 LIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
+I CGD NV+H+EID+++P F+A GFT ER+ F +L +G
Sbjct: 163 VIACGDFNVAHKEIDLANPASNHFSA-----------------GFTDEEREGFTNLLAKG 205
Query: 274 RLIDAYRFLHKE-KDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
D++RF+H + KD+ +SW G I K RIDYFIVS+ +KD+I EM
Sbjct: 206 -FTDSFRFIHGDVKDI---YSWWGQRIKTSKINNSGWRIDYFIVSDRIKDKIQKSEMIDS 261
Query: 331 GIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 262 GPR------QDHTPILLEI 274
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D +QE +M G D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKDLDADFFCIQETKM-QDGQLDIS---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K +P VS+ ++ +
Sbjct: 47 ------------------FPGYESYWNYAEKKGYSGTAIFTKH--KPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E + F+L+ Y PN+ ++ + R KW+ Q ++ + K P+I C
Sbjct: 85 HDHEGRVITLEMDDFFLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDAKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLNNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + R RIDYF++S+ LKDR++ ++
Sbjct: 187 RSLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISDRLKDRLVDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV ++L
Sbjct: 238 GSDHCPVEVDL 248
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER +F +L G +D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLIL 249
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 142/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFEQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P VS+ + K
Sbjct: 39 ---QEEQI---------PFQLEGYYAYWNFAQKKGYSGTAVFTKN--EPLSVSYGIGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EFETFYL+ YAPN+ + R W++ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFETFYLVTVYAPNS--QRGLARLDYRMTWEEEFLSYLKSLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H EID+ +P K + GF+ ER +F +LK G ID
Sbjct: 141 FCGDLNVAHTEIDLKNP---------------KSNRKNAGFSDEERAKFSGLLKNG-FID 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R + +K D WS + RIDYF VSE LK+ + + +
Sbjct: 185 TFRHFYPDK-TDSYTWWSYMFNARTNNAGWRIDYFCVSESLKNEL------KDALIYDKI 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 238 MGSDHCPVGLEI 249
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V +F D D LQE +M AG D
Sbjct: 1 MKLISWNVNGLRACVGK---DFEQQFKALDADFFCLQETKM-QAGQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+S P + +Y W+ AD K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------ISFPGYTSY---WNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q ++ KP++ C
Sbjct: 85 HDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQNYLHWLDEKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 187 RSLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IM 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ ++L
Sbjct: 238 GSDHCPIEVDL 248
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ + + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSVLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 146/311 (46%), Gaps = 61/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N ++ I D D++ALQE + D+ K +E+K
Sbjct: 94 LKISSWNVSGIRAVIKKNGIKY---IAKEDADIVALQETKC------DSNKLPEEIK--- 141
Query: 102 KASREEKLILMRALSSPPFKNYQIWW-SLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++ S Y G AL K+ +P V + L + +
Sbjct: 142 ------------------LNGYHYYFLESKKSGYCGVALFTKE--KPIDVKYGLNNS--E 179
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I C
Sbjct: 180 FDNEGRLITAEYLNFYLINVYVPNAGQKLV--TLPKRLKWNEIFKTYVRNLDEKKPVIIC 237
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFTI ER L G +D +
Sbjct: 238 GDMNVAHKEIDLRNP---------------KTNIKNAGFTIEERDGMTDFLATG-FVDTF 281
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ +K D WS + + R+DYF+VSE +KD + C+ + + YG
Sbjct: 282 RALYPDK-TDAYTFWSYFANARSKNIGWRLDYFLVSERIKDNV--CD----NVIRDKVYG 334
Query: 340 SDHCPVSLELS 350
SDHCP+ L ++
Sbjct: 335 SDHCPIVLYIN 345
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N +K F + + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDE----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + Y +S + Y+GT + K +P VSF + ++
Sbjct: 47 -------------MNIEGYHRYS--YSANKAGYSGTLVYTK--VEPIGVSFGIGID--EH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCG 220
+ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I CG
Sbjct: 88 DTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P+ N+ GFT ER + +L +G ID +R
Sbjct: 146 DLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTFR 189
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K + + WS + R RIDYFIVS++LKD ++ ++ + GS
Sbjct: 190 YFYPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH------QSIMGS 242
Query: 341 DHCPVSLELS 350
DHCPV LE++
Sbjct: 243 DHCPVELEIN 252
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ KK +P V++ + +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L G
Sbjct: 187 RYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ L+L
Sbjct: 240 SDHCPIELDL 249
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F + D+ +QE +
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFNEVNADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + K Y +W+ A+ K Y+GTA+ KK +P V + L +
Sbjct: 38 ---------LQEGQINLELKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVRYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE F+++ Y PN+ + E R KW+ ++++ KP+I C
Sbjct: 85 HDKEGRVITLEFEDFFMITVYTPNS--QNELARLDYRMKWEDDFKKYLKHLEKSKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P N+++ GFT ER++ ++L +G ID +
Sbjct: 143 GDLNVAHKEIDLKNP------------TTNRKN---AGFTDEEREKLTSLLNDG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + WS + RIDYF+VSE LKDR+ + ++ + G
Sbjct: 187 RYFYPETTGVYSW-WSYRFNARKNNAGWRIDYFVVSESLKDRLESAKIHTEVL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 240 SDHCPVELTI 249
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D + LQE +M HQE D
Sbjct: 1 MKLVSWNVNGLRACLGKG---FLDFFSAADADAVCLQETKM-----------HQEQAD-- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P YQ +W+ A+ K Y+GTA+ + P V++ + +
Sbjct: 45 -------------LELP---GYQQFWNSAEKKGYSGTAVFTR--VPPLNVTYGIGMA--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E+E FYL+N Y PN + E + R KW+ + +++ K P++ C
Sbjct: 85 HDSEGRVITVEYEPFYLVNCYTPNA--QRELARLEYRMKWEDDFRAYLMSLDAKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER + +L G +D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFSDEERAKMTELLAGG-FVDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ D+ ++ WS + RIDYFIVSE L+ + ++ +
Sbjct: 187 RALY--PDVTGAYTWWSYLRRARDTNAGWRIDYFIVSERLRGAVHDSRIRADVM------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 GSDHCPVELDL 249
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 149/327 (45%), Gaps = 81/327 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N L +K F FI T PDV+ LQE T
Sbjct: 1 MKIYSWNVNGLRAVLKKGL--FMPFIETHQPDVLCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-TAL 159
K+ RE+ I Y +W+ A +K Y+GTA+ + +P V+ K A
Sbjct: 38 KSEREQVEI--------DLAGYHEYWNSATTKGYSGTAIFSRT--EPLSVTNGFAKAVAK 87
Query: 160 KY----------EPDGRVILAEFETFYLLNTYAPNNGWKEEENSF-QRRRKWDKRIQEFV 208
KY E +GRVI AEFE F+++ Y PN K++ + R + WD F+
Sbjct: 88 KYTLVDDAGRDSETEGRVITAEFEKFFVVTVYTPNA--KDDLSRLPLRSQHWDA---AFL 142
Query: 209 LQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
C KP+++CGDLNV+H E+D+++P+ PN+ G+ GFT ER+
Sbjct: 143 AHCKALEMKKPVVFCGDLNVAHTELDLANPK------------PNR---GRKGFTDEERQ 187
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRII 323
F + L G +D R H+ + +S WS + R RIDY +VS L+ +
Sbjct: 188 GFQSFLDAG-FVDTLRMFHQG---NGHYSWWSHFANSRARNVGWRIDYVLVSAALQKSVA 243
Query: 324 ACEMQGHGIELEGFYGSDHCPVSLELS 350
E+ + GSDHCPVS+ LS
Sbjct: 244 TAEIHADVM------GSDHCPVSVTLS 264
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 148/313 (47%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F +F D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACVKKG---FEDFFKEADADIFCVQETKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKTA 158
Y+ +W+ A+ K Y+GTA+ KK P KV +E+
Sbjct: 50 ---------------------YECYWNYAEKKGYSGTAVFTKK--HPLKVWNGIGMEE-- 84
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
++ +GRVI EFE F+ + Y PN+ + E R KW+ +E++ + KP+I
Sbjct: 85 --HDQEGRVITLEFEDFFFVTVYTPNS--QSELKRLDYRMKWEDDFREYLQELDKEKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
GDLNV+HEEID+ +P+ NK++ GFT ER +F +L G +D
Sbjct: 141 MTGDLNVAHEEIDLKNPK------------TNKKN---AGFTQEERNKFTELLGAG-FVD 184
Query: 278 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
++R+L+ E + ++ WS + + RIDYF+VSE K++I I +
Sbjct: 185 SFRYLNPE--LAGAYTWWSYRFKAREKDAGWRIDYFVVSERWKEKI------EDAIIYKT 236
Query: 337 FYGSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 237 VMGSDHCPIGLQM 249
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 187 RYFY--PDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------E 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVVLFL 249
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K + E+ I D D++ALQE + D
Sbjct: 84 LKISSWNVSGIRALIKKSGMEY---IMKEDADIVALQETKC----------------DKN 124
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTA 158
K E KL K Y ++ DSK Y G AL K+ +P + + L+ +
Sbjct: 125 KLPEEVKL-----------KGYHHYF--LDSKKAGYCGVALYTKQ--KPIDIQYGLKNS- 168
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GR+I AE+ FY LN Y PN G K + +R +W++ + +V Q KP+I
Sbjct: 169 -EFDDEGRLITAEYPNFYFLNVYVPNAGQKLV--TLPKRLQWNEAFKSYVKQLDEKKPVI 225
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGD+NV+H+EID+++P K + GFT ER+ L G +D
Sbjct: 226 ICGDMNVAHQEIDLTNP---------------KTNTKNAGFTKEEREGMTDFLAAG-FVD 269
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K F WS + + R+DYF+VSE++K+++ C+ + +
Sbjct: 270 TFRSLYPDKTGAYTF-WSYFANARSKNIGWRLDYFLVSEKIKNKV--CD----NVIRDKI 322
Query: 338 YGSDHCPVSL 347
YGSDHCP+ L
Sbjct: 323 YGSDHCPIVL 332
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 146/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK+++WN N L +K F + D D LQE ++ + HQ
Sbjct: 4 LKYISWNVNGLRACIKKG---FMDAFNALDADCFCLQETKL---------QPHQ------ 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W S Y+GTA+ K+ +P V++ L ++
Sbjct: 46 -----------IELELPGYHQY--WNSAVKKGYSGTAIFTKE--EPLSVTYGLGIE--EH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I A+F + YLL Y PN+ + R W+K ++E++ + + KP+I CG
Sbjct: 89 DQEGRLITADFGSHYLLCCYTPNS--QRGLARLSYRMTWEKAMKEYMTKLAAEKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HE+ID+++P N ++ GFT ER R +L G D++R
Sbjct: 147 DLNVAHEDIDIANP------------ASNHKN---AGFTDEERGRMTDLLAAG-FTDSFR 190
Query: 281 FLH-KEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
LH EKD +S WS + R RIDYF+VS KD I +G I +
Sbjct: 191 HLHPDEKD---AYSWWSYFAKARERNVGWRIDYFLVSSVWKDHI-----KGASIHSD-IL 241
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 242 GSDHCPVELDL 252
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 144/311 (46%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 9 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 51
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 52 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEH 92
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CG
Sbjct: 93 DNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCG 150
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + IL G D++R
Sbjct: 151 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDSFR 194
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ +K +SW + +G R K + RIDYFIVS++LKDRI ++
Sbjct: 195 VLYPDKTD--AYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------IL 245
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 246 GSDHCPVELDI 256
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 67/314 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
D K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 7 DMKKMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE----------- 52
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L P + +Y W+ A K Y+G A+ K +P V++ +
Sbjct: 53 ---------------LDLPGYYDY---WNYATKKGYSGVAVFTKD--KPINVTYGIGID- 91
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE++ FYL+ Y PN+ + R W+ ++ L+ KP+I
Sbjct: 92 -EHDNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYALKLEEKKPVI 148
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H+EID+ +P K + GFT ER + IL G +D
Sbjct: 149 FCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVD 192
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 335
++R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ +
Sbjct: 193 SFRLLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL--- 246
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 247 ---GSDHCPVELDI 257
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 149/324 (45%), Gaps = 73/324 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITT--------FDPDVIALQEVRMPAAGSKDAPKN 93
+KFV+WN N L VK N I+ D D LQE +M AG D
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKM-QAGQLDLQ-- 57
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
F Y+ +W+ A+ K Y+GTA+ K +P V+
Sbjct: 58 --------------------------FNGYRSYWNYAERKGYSGTAIYTKH--EPMNVAC 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFV 208
+ +++ +GRVI E+ FYL+N Y PN+ + + R KW++ + ++
Sbjct: 90 GM--GIEEHDNEGRVITLEYPEFYLVNVYTPNSQESLPGEVKPKRLGYRMKWEEDFRAYI 147
Query: 209 LQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ + KP+I CGDLNV+H+EID+ + K + GFT ER++
Sbjct: 148 KRLNETKPVIVCGDLNVAHQEIDIKNA---------------KTNRNNAGFTDEEREKMT 192
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G ID +R ++ E+ + +S WS + R RIDYF+VSE L+++I+
Sbjct: 193 ILLDNG-FIDTFRTMYPEQVI---YSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDAR 248
Query: 327 MQGHGIELEGFYGSDHCPVSLELS 350
+ YGSDHCPV LEL+
Sbjct: 249 IHTE------IYGSDHCPVELELN 266
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + + EF N + + DV +QE +M
Sbjct: 1 MRLISWNVNGLRACMNKGFMEFFN---SVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R + F NY+ +W+ A+ K Y+G A+ K +P V + +
Sbjct: 39 ----------QREQAEFDFPNYEEYWNSAEKKGYSGVAIFSK--IKPLSVEYDM--GIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I AEF FYL+N Y PN+ K E + R +W+ + F+ S KP+I C
Sbjct: 85 HDKEGRIITAEFSDFYLVNVYTPNS--KRELERLEYRMEWEDDFRTFLKNLESKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ A+L G D Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSALLDSG-FTDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R + EK ++W + +GK R RIDYF+ S+ L R+ + + +
Sbjct: 187 RHFYPEK--QGAYTW-WSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEIL----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV +E+
Sbjct: 239 -GSDHCPVGIEI 249
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N + D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVGK---DFENIFKSLDADFFCLQETKM-QAGQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ AD K Y+GTA+ + +P V++ + +
Sbjct: 47 ------------------FDGYESFWNYADKKGYSGTAIYTRH--KPLNVTYGIGID--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E TF+L+ Y PN+ ++E R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMPTFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHDLDKRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLGAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E + +S WS + R RIDYF+VS+ L+ ++ ++
Sbjct: 187 RWKYPE---EITYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIH------TDIL 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 238 GSDHCPVELEL 248
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 158/327 (48%), Gaps = 60/327 (18%)
Query: 27 ETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
+ + + + KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 46 DAPDNVTSADGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---- 98
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKC 144
EKL+ P + + +W+ D K Y+G A+L K
Sbjct: 99 -------------------AEKLLPPDVKDMPEYPHK--YWACPDEKEGYSGVAMLCKD- 136
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
+P V++ + +++ +GRVI AEF++F+++ Y PN+ R++WD
Sbjct: 137 -KPLNVTYGI--GIEEHDKEGRVITAEFDSFFVIAAYIPNSS--RGLVRLDYRQRWDVDF 191
Query: 205 QEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
+ ++ S KPLI CGDLNV+H+EID+ +P K + PGFT ER
Sbjct: 192 RAYLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQER 236
Query: 264 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 323
+ FG +L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ +
Sbjct: 237 QGFGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALC 294
Query: 324 ACEMQGHGIELEGFYGSDHCPVSLELS 350
C+++ GSDHCP++L ++
Sbjct: 295 DCKIRSK------VMGSDHCPITLLMA 315
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 144/311 (46%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 27 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 69
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + +Y W+ A K Y+G A+ K +P V++ + ++
Sbjct: 70 ------------LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEH 110
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+CG
Sbjct: 111 DNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCG 168
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + IL G D++R
Sbjct: 169 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDSFR 212
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ +K +SW + +G R K + RIDYFIVS++LKDRI ++
Sbjct: 213 VLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------IL 263
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 264 GSDHCPVELDI 274
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 139/308 (45%), Gaps = 62/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F + D D +QE ++ G D
Sbjct: 1 MKFISWNVNGLRAAVTHG---FMDTFNQLDADFFCVQETKLQL-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P NY +W+ AD K Y+GTA+ K K ++ SL +
Sbjct: 45 -------------LKLP--DNYYQYWNYADKKGYSGTAIFTKH----KPLNASLGIGIDE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ +FYL+ Y PN+G + + F R+ W+K +++ Q S K +I+C
Sbjct: 86 FDHEGRVITLEYPSFYLITCYTPNSGQQLKRLDF--RQNWNKAFLDYINQLSAKKDVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HE ID+ +P + GFT ER F +L E +D Y
Sbjct: 144 GDLNVAHETIDLKNP---------------SSNHHAAGFTDEERNDFTHLL-ESNFVDTY 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + E + WS + R RIDYF+ S L D+++ ++ +G
Sbjct: 188 RHFYPEVTEQYSW-WSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIHSE------IFG 240
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 241 SDHCPVEL 248
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 145/321 (45%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I+T+D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLKTISTYDADVIAIQETKLSAKG---PTKKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ +D F +Y + W A YAGT + KK P V+
Sbjct: 58 EVLNDF------------------FPDYALAWRSSEEPARKSYAGTMFIYKKSLDPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+ EFE ++ Y PN+G K + R+ WD++ E++
Sbjct: 99 YPQIGAPATMDQEGRITTLEFEKCFVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD N +HEEID++HP+ + GFT ER F +L
Sbjct: 157 DQQKPVISSGDFNCAHEEIDLAHPD---------------RNHRSAGFTDEERIDFTKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+ G D++R +H ++ +SW + K RIDY++VS+ +KD+II EM
Sbjct: 202 ESG-FNDSFRTVH--GNVTGAYSWWAQRVKTSKTNNSGWRIDYYLVSDRIKDKIIKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIYLEI 273
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 144/309 (46%), Gaps = 59/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + ++ + +PDV+ LQE+ K P+ ++L
Sbjct: 1 MKLVSWNVNGLRAVLGKG---MADAVDALEPDVLCLQEI-------KARPEQVKDLW--- 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+SS P +Q+W + Y+G +L + + +S S+ ++
Sbjct: 48 -------------ISSWP---HQLWNPAEKAGYSGVLILSRV----RPLSTSVGIGWPEH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV EFE FYL+N Y PN+ + E R +WD +E+V + KP+++CG
Sbjct: 88 DREGRVCTMEFEGFYLVNCYTPNS--QNELVRLPYREQWDAAFREYVAGLAETKPVVFCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID++ P KE+ GF+ ER F +L+ G D +R
Sbjct: 146 DLNVAHEEIDIARP---------------KENRFSAGFSDQERAGFTLLLEAG-FTDTFR 189
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
LH E+ + WS + R RIDYF VS L R+ + GS
Sbjct: 190 ALHPEEPGWYSW-WSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIH------PDVTGS 242
Query: 341 DHCPVSLEL 349
DHCPVSLE+
Sbjct: 243 DHCPVSLEI 251
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F +F D D+ +QE ++ +
Sbjct: 13 KMISWNVNGLRAAVTKG---FLDFFRDIDADIFCIQESKLSEGQIE-------------- 55
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Y W A Y+G A+ K +P V++ + +++
Sbjct: 56 ------------LDLPGYYDY--WNYAAKKGYSGVAVFTKD--KPIGVTYGI--GIEEHD 97
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGD 221
+GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+CGD
Sbjct: 98 NEGRVITAEYDDFYLITCYTPNS--QRGLTRLDYRMAWEDAFLDYVLKLEEKKPVIFCGD 155
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+H+EID+ +P K + GFT ER + +L G D++R
Sbjct: 156 LNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDIVLSSG-FADSFRV 199
Query: 282 LHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ +K + +SW + +G R K + RIDYFIVS++LKDRI ++ G
Sbjct: 200 LYPDK--EGAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILG 250
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 251 SDHCPVELDI 260
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 144/310 (46%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + +K F + + D+ +QE + +
Sbjct: 1 MKFISWNVNGIRACLKKG---FEEYFQEANADIFCIQETKCQEGQVE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + Y W S Y+GTA+ K+ +P VS+ + ++
Sbjct: 45 -------------LTLPGYHQY--WNSAVRKGYSGTAIFAKR--EPLSVSYGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI E+E FY + Y PN+ + E R W++ E++ + KP++WCG
Sbjct: 86 DQEGRVITLEYEDFYFVTVYTPNS--QNELARLSYRMDWERDFLEYLTKLEERKPVVWCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER F +L+ G ID +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + + RIDYF+VS L+++++ ++ + GS
Sbjct: 188 YFYPDQEGIYSW-WSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVL------GS 240
Query: 341 DHCPVSLELS 350
DHCPV L+++
Sbjct: 241 DHCPVELDIT 250
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S+ LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSDPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V N F +F D D+ +QE +M
Sbjct: 12 MKMISWNVNGIRACVGKN---FMDFFKEADADIFCIQESKM------------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L P + Y W+ A+ K Y+GTA+ KK +P V++ + +
Sbjct: 50 ---QEGQL----QLELPGYYQY---WNYAEKKGYSGTAIFAKK--EPLSVAYGI--GIEE 95
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E++ FY++ Y PN+ + E R KW+ +E++ Q KP++ C
Sbjct: 96 HDHEGRVITLEYDNFYMVTVYTPNS--QNELARLDYRMKWEDDFREYLKQLEQTKPVVVC 153
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H EID+ +P K + GFT ER++F +L G +D +
Sbjct: 154 GDMNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFSTLLDSG-FVDTF 197
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RF + D + +S WS + + RIDYF+ S+ L+ R++ ++ +
Sbjct: 198 RFFN--PDAEGIYSWWSYRFKAREKNAGWRIDYFLTSKVLESRLVDAKIHTEVL------ 249
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 250 GSDHCPVELDI 260
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V + F D D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGKD---FEQQFKALDADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ K+ P VS+ + +
Sbjct: 46 -----------------QFPGYQSFWNYAEKKGYSGTAIYAKQA--PLAVSYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E+F+L+ Y PN+ ++E R +W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYESFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER + +L G ID +
Sbjct: 143 GDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERAKMTQLLGHG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++SE L+ ++ ++
Sbjct: 187 RTLYPEQQT---YSWWSYRFRAREKNTGWRIDYFLISERLRPQLTDAKIH------TDIM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV ++L
Sbjct: 238 GSDHCPVEVDL 248
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 142/307 (46%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK TWN + + +K N ++ I D D+IALQE + G P D+
Sbjct: 75 LKICTWNVSGIRAVIKKNGLDY---IAKEDADIIALQETK---CGKDKMP-------DEI 121
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K S L S Y G AL K+ +P V + L + +
Sbjct: 122 KLSGYHHYFL----------------DSKQSGYCGVALFCKE--KPVSVKYGLNNS--NF 161
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GR+I AEF F+++N Y PN G K + +R +W+K ++++ + KP+I CG
Sbjct: 162 DSEGRIIAAEFPEFFMVNVYVPNAGQKLV--TLPKRLEWNKIFKKYIEELDQKKPVIICG 219
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +P K + GFT ER L G ID +R
Sbjct: 220 DMNVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLAAG-FIDTFR 263
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +K+ F WS + + R+DYF+ SE +K++I C+ I + YGS
Sbjct: 264 LLYPDKEGAYTF-WSYFANARNKDIGWRLDYFLASERIKNKI--CD----NIIRKQVYGS 316
Query: 341 DHCPVSL 347
DHCPV L
Sbjct: 317 DHCPVIL 323
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 61/309 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN N L + F +F D D+ +QE ++ +
Sbjct: 3 KLVSWNVNGLRACIGKG---FWDFFKEVDSDIFCIQETKLQEG----------------Q 43
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
E++L + Y+ +W+ A K Y+GTA+ K K VS S ++
Sbjct: 44 VELEQEL-----------EGYEQYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF+ ++L+N Y PN+ K E + R KW+ + ++ Q KP+I CG
Sbjct: 89 DNEGRVITLEFDQYFLVNVYTPNS--KRELERLEYRMKWEDDFRIYLKQLEETKPVIICG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H+EID+ +P NK GFT+ ER++F +L++G +D+YR
Sbjct: 147 DMNVAHKEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDSYR 190
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +K + WS + R RIDYF VSE LK+ I ++ GS
Sbjct: 191 TLYPDKTGAYTW-WSYMFKARERNVGWRIDYFCVSEVLKNIIEEADIYSE------IMGS 243
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 244 DHCPVGLTI 252
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 34/230 (14%)
Query: 124 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 183
Q W+ Y+GTA++ K +P V++ + +E GRVI E+E +YL+ Y P
Sbjct: 53 QYWYDAEKKGYSGTAIITKN--KPLNVTYGIGVDEFDHE--GRVITLEYEDYYLMTVYTP 108
Query: 184 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 242
N + + R KW + F+ + KP+++CGDLNV+H+ ID+ +P
Sbjct: 109 NA--QRDLKRLGFRLKWGQAFTNFIDRLDRRKPVVFCGDLNVAHQAIDLKNP-------- 158
Query: 243 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 302
K + GFT ER+ F +L G ID++R+LH D + +SW + +G
Sbjct: 159 -------KSNMKNAGFTAEERQDFSELLDTG-FIDSFRYLH--PDREGAYSW-WSYMGNA 207
Query: 303 RGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R + + RIDYF++SE LK RI ++ L GSDHCPV +EL+
Sbjct: 208 RARNVGWRIDYFVISERLKKRIKDAKI------LADVRGSDHCPVEIELA 251
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 141/309 (45%), Gaps = 62/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N ++ F +F T D D+ +QE +M + +P+ +
Sbjct: 1 MKFISWNVNGFRACLQKG---FGDFFTAADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ + S Y+GTA+ KK +P +V F L T +
Sbjct: 51 ---------------------LKYFHSAVKKGYSGTAVYTKK--EPLEVKFGLNGT---H 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+GRVI EFE +Y + Y PN + E R +++ ++ ++ Q KP+++CG
Sbjct: 85 TDEGRVITCEFEDYYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLSQLDKTKPVVYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 143 DLNVAHEEIDLKNP---------------KSNAGNAGFSDEERGKFTELLGAG-FADTFR 186
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +K + WS + RIDYF+VSE L D++ ++ L GS
Sbjct: 187 RLYPDKAGAYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKVKDSKI------LSDITGS 239
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 240 DHCPVELDI 248
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 137/308 (44%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK +F D D +QE +M
Sbjct: 1 MKFISWNVNGLRAVVKK---DFEAEFEALDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L +L P NY +++ A+ K Y+GT + K +P V + + L
Sbjct: 39 ---QENQL----SLDLP---NYHQYYNYAEQKGYSGTGIFTKH--EPLSVHYGINVPELD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GR I E+++F+L+ Y PN+G E R +WD Q ++L+ + KP+I C
Sbjct: 87 HE--GRTITLEYKSFFLVTCYTPNSG--HELKRLDFRMQWDPAFQSYLLKLNKRKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ P + GFT ER+ F +L G ID Y
Sbjct: 143 GDLNVAHSEIDLKSP---------------TSNHHNAGFTDEERENFTTLLDSG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K + WS + RIDYF+ S+ L RI + L G
Sbjct: 187 RYFYPDKKEKYSW-WSYRTKAREVNSGWRIDYFLASKSLAPRISDANI------LTNVMG 239
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 240 SDHCPVVL 247
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNIL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 152/318 (47%), Gaps = 67/318 (21%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL++++ + NF D++ LQE ++ KD +
Sbjct: 288 VKVMTWNVNGLRALLKLESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKN 338
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 339 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 375
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 212
+ ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 376 TGLSGSDHDMEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 434
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP++ GDLN +HEEID+ +P A K N GFTI ER+ FGA +
Sbjct: 435 SKPVVLTGDLNCAHEEIDIFNP---AGNKRNA------------GFTIEERQSFGANFLD 479
Query: 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-RIDYFIVSEELKDRIIACEMQGHG 331
+D +R K+ G+++ G G + R R+DYF+VSE IA +
Sbjct: 480 KGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNRGWRLDYFLVSES-----IAANVHDSY 531
Query: 332 IELEGFYGSDHCPVSLEL 349
I L GSDHCP+ L L
Sbjct: 532 I-LPDINGSDHCPIGLIL 548
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 144/324 (44%), Gaps = 80/324 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L K FS+ T+ DV ALQE ++ QE + D
Sbjct: 1 MRLVSWNVNGLRAAEKKG---FSDIFTSLKADVFALQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F +Y+ WS A+ K Y+GTA+ ++ +P +V L L
Sbjct: 46 E-----------------FPDYESHWSYAERKGYSGTAVYARQ--KPLQVLHGLGVPHLD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 TE--GRICALEFPEFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLEKGTTP 139
Query: 214 --------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
KP+I CGD NV+HEEID+ +P K + G GF+ ER++
Sbjct: 140 LGPDTAQPKPVIMCGDFNVAHEEIDLKNP---------------KSNRGNAGFSDEEREK 184
Query: 266 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
F +L G +D +R L+ ++ WS + RIDYF+VS+ L DR+ A
Sbjct: 185 FTKLLDAG-FVDTFRLLNP-TEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLADRVRAA 242
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
+ +GSDHCPVSL++
Sbjct: 243 RIHAD------LFGSDHCPVSLDI 260
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L +G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNDG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 145/323 (44%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F NY W A YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSL-EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 327
LK G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 201 LKLG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 258 IDTGDR------KDHCPIMLEIN 274
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNVGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFKKLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L YQ +++ A+ K Y+GTA+ K P V++ +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PLDVTYGINSDEFN 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I C
Sbjct: 87 HE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ + GFT ER+ F +LK G +D +
Sbjct: 143 GDLNVAHKEIDLKNPQ---------------SNHHNAGFTDEERQDFTNLLKAG-FMDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS + R RIDYF+ S L D I ++ L +G
Sbjct: 187 RHFYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADEIEDSKI------LTDVFG 239
Query: 340 SDHCPVSLE 348
SDHCPV L+
Sbjct: 240 SDHCPVELD 248
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 47 ------------------LDDYEQYWNYAQKKGYSGTAIFTKHT--PLSVMYGVGDE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GR+I E++ FYL+N Y PN + + R W+ R+ ++ S KP+++C
Sbjct: 85 SQDEGRIITLEYQNFYLVNVYTPNA--QRDLARLPLRLTWEDRLAGYLQDLNSKKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + K + G GFT ER +F +L G +D++
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNVGNSGFTYEERAKFSELLASG-FVDSF 186
Query: 280 RFLH-KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
R+ H E D F+W + + K R + + RIDYFIVSE+LK++I + H
Sbjct: 187 RYKHPNETDH---FTW-WSYMNKVRERNIGWRIDYFIVSEQLKNQIDQATIHPH------ 236
Query: 337 FYGSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 237 IMGSDHCPIELQL 249
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 141/313 (45%), Gaps = 65/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ + +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIHNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+E GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GF+ ER +L+ G L D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+RF H ++ + WS + RIDYFIVSE LKD + E+ L
Sbjct: 186 FRFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIM 238
Query: 339 GSDHCPVSLELSE 351
GSDHCPV LE ++
Sbjct: 239 GSDHCPVLLETAD 251
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDIEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + + F ++ PDVI LQEV+
Sbjct: 1 MKFVSWNVNGVRSVLTKG---FLEYLEKESPDVIGLQEVK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L S YQ++W+ A+ K Y+GTA+ K +P V + +
Sbjct: 38 --ATEEQFPAGLDLQSL---GYQVYWNAAERKGYSGTAVFSK--IKPLSVRYGYGMA--E 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I
Sbjct: 89 HDTEGRIITLEFEEYFFVTVYTPNA--KRELERLEYRQLWDSLFFDYLKRLEAEKPVIVS 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+S+P K + G GFT ER FG L +G ID +
Sbjct: 147 GDLNVAHKDIDLSNP---------------KANRGSAGFTDEERDGFGKFLSDG-FIDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + K + + WS + R R+DYF++SE L++R+ + ++ + G
Sbjct: 191 RHFYPNKTEEYTW-WSNFFHARDRNIGWRLDYFLISEWLRERLKSAFIR------QEIRG 243
Query: 340 SDHCPVSLEL 349
SDHCPV +E+
Sbjct: 244 SDHCPVGVEI 253
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 142/313 (45%), Gaps = 65/313 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+ FV+WN N L +K N FS D D +QE ++ + D P HQ
Sbjct: 1 MNFVSWNVNGLRAVLKKN---FSEVFEKLDADFFCIQETKLQEGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P+ VS+ ++ +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFTKH--EPQSVSYGIKNSEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+E GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 86 DHE--GRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GF+ ER +L+ G L D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+RF H ++ + WS + RIDYFIVSE LKD + E+ L
Sbjct: 186 FRFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIM 238
Query: 339 GSDHCPVSLELSE 351
GSDHCPV LE ++
Sbjct: 239 GSDHCPVLLETAD 251
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK+ +F+ D D +QE +M
Sbjct: 1 MKFISWNVNGLRAAVKH---DFAETFQQLDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L YQ +++ A+ K Y+GTA+ K P V++ +
Sbjct: 39 ---QEGQLEL-------DLPGYQQYFNYAERKGYSGTAIFTKHA--PMHVTYGINSDEFD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GR I E+ FYL+ +Y PN+G + F R W+K +++ + K P+I C
Sbjct: 87 HE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EI++ +P+ + GFT ER+ F +LK G +D +
Sbjct: 143 GDLNVAHKEIELKNPQ---------------SNHHNAGFTDEERQDFTKLLKAG-FMDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS + R RIDYF+ S L D+I ++ L +G
Sbjct: 187 RHFYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADQIEDSKI------LTDVFG 239
Query: 340 SDHCPVSLE 348
SDHCPV L+
Sbjct: 240 SDHCPVELD 248
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAVKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVAC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLFL 249
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F PD LQE +M G D L+
Sbjct: 1 MKLISWNVNGLRACLKKG---FLDFYQEQKPDFCCLQETKMEQ-GQADVDLGENMLE--- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ QP V + + K +
Sbjct: 54 ------------------------YWNSAEKKGYSGTAVFTPH--QPLAVRYGMGKE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I E+E FYL+ Y PN+ + E R +W+ ++ ++++ KP+I+C
Sbjct: 86 HDHEGRLITLEYEKFYLVCCYTPNS--QSELKRLDYRMEWEDDLRAYLMELDKVKPVIYC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ ++N GFT ER++ +L G D +
Sbjct: 144 GDLNVAHREIDLKNPK---TNRMNA------------GFTDQEREKMTTLLSSG-FTDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RFL+ D++ +S WS + + RIDYFIVS+ L++ I E+ L
Sbjct: 188 RFLY--PDLEGVYSWWSYRFQARKKNAGWRIDYFIVSDRLQNAIKRAEI------LTQVE 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 240 GSDHCPVLLEL 250
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 119 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 177
PF Y+ +W+ A+ K Y+GTA+ K+ +P V + L E +GRV+ EFE F+L
Sbjct: 32 PFDGYEHYWNYAEKKGYSGTAVFTKQ--RPLSVQYGL--NGQDSEAEGRVLTLEFEKFFL 87
Query: 178 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 236
+N Y PN+ + + R KW+ + + + KP+I+CGDLNV+HEEID+ +
Sbjct: 88 VNCYTPNS--QRDLARLSYRLKWEDEMLAHLTELDAQKPVIYCGDLNVAHEEIDICNV-- 143
Query: 237 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 296
K ++G GFT ER + +L G ID +R+LH ++ + WS
Sbjct: 144 -------------KSNYGNSGFTKEERAKMTRLLDSG-FIDTFRYLHPNQEGAYTW-WSY 188
Query: 297 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 352
+ R RIDY ++S L+ + E+ + GSDHCP+S E + A
Sbjct: 189 MRDVRARNIGWRIDYLLISNRLQSTLQTSEIHAEIL------GSDHCPISAEFAFA 238
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 239 -----GSDHCPVVLFLN 250
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 239 -----GSDHCPVVLFLN 250
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 160/332 (48%), Gaps = 66/332 (19%)
Query: 20 SPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQE 79
+P + G + +E+ S K K ++WN N L + F ++ D D+ +QE
Sbjct: 16 NPEQSGGRKSAIETEKLSMK---KMISWNVNGLRACLGKG---FLEYLKESDADIFCIQE 69
Query: 80 VRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTA 138
++ QE + D L P + Y W+ A+ K Y+GTA
Sbjct: 70 SKL------------QEGQVD--------------LELPGYHQY---WNYAEKKGYSGTA 100
Query: 139 LLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
+ K+ +P V++ L +++ +GRVI AEF +Y++ Y PN+ ++ R
Sbjct: 101 MFTKE--EPIAVTYGL--GIEEHDHEGRVITAEFPEYYVVTCYTPNS--QDGLKRLDYRM 154
Query: 199 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
+W+ + ++ + + KP+I+CGDLNV+H+EID+ +P K + G
Sbjct: 155 QWEDAFRAYLKELETKKPVIFCGDLNVAHQEIDLKNP---------------KTNRKNAG 199
Query: 258 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE 317
F+ ER +F +L+ G +D +R+ + +++ + WS + + RIDYF VSE
Sbjct: 200 FSDEERAKFTELLEAG-FVDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSES 257
Query: 318 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
LKDR++ ++ + GSDHCPV L++
Sbjct: 258 LKDRLVDAKIHTEVM------GSDHCPVELDI 283
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHSQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLFL 249
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIHSQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLFL 249
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLHVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE Y++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVYVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELEKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 148/319 (46%), Gaps = 67/319 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L V F ++ D D LQE ++
Sbjct: 1 MKFVSWNVNGLRASVNKG---FLDYFNEMDADFFCLQETKLQEG---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ KL L A Y ++W A+ K Y+GTA+ K +P +S+ L +
Sbjct: 42 ----QIKLELGEA--------YHLFWHYAEKKGYSGTAIFTKH--KPLSISYGLGEE--D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E+E FYL+ Y PN + + + R W++ + ++++ KP+I C
Sbjct: 86 EDTEGRVITLEYENFYLVTVYTPNA--RRDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + G GFT ER++ +L G ID++
Sbjct: 144 GDLNVAHQDIDLKNA---------------KSNRGNSGFTDEEREKMTRLLDAG-FIDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ D WS P + R RIDYF+ S L I+ GI+ + G
Sbjct: 188 RYLYPDR-TDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEA-----GIDSQ-ILG 240
Query: 340 SDHCPVSLELSEASSDSEK 358
SDHCPV L L D+EK
Sbjct: 241 SDHCPVVLTL-----DTEK 254
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 165/362 (45%), Gaps = 65/362 (17%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-------- 86
S+ DP K + W+ + + + + W +F + +P ++ LQ V++ A+
Sbjct: 106 SEDDPKKIMVWDISGMHDMNKKSKAWNQFLALVNENNPCILILQNVKLCASKFTGICAKI 165
Query: 87 ------SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
P QEL+D + + L FK Y++ SLA + G +L
Sbjct: 166 PSKYNEGTIPPTYEQELEDGS---------FIDNLMKTSFKKYKVIHSLASWRVRGQMIL 216
Query: 141 VKKCFQ--------PKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEE 190
+KK F PK++ ++L ++ A + +GRV++ EF++FYL++ P NGW E
Sbjct: 217 LKKSFTVSNSTFILPKRIRYNLNIKQNAKYHNHEGRVVIIEFDSFYLMSLITPGNGWITE 276
Query: 191 ENSFQRRRKWDKRIQEFVLQCSG--KPLIWCGDLNVSHEEIDVSHPEFFAAAKL-NGYVP 247
S ++R+KWD + F L+ S K +I G+LN S E+IDVS+P AA KL V
Sbjct: 277 --SIKQRKKWDLELTTF-LKASKYIKAVIMVGNLNCSPEDIDVSNP---AALKLEKTAVL 330
Query: 248 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH------KEKDMDCGFSWSGNPIGK 301
+E G PG +R F LK G L D YRF++ E D + S + NP
Sbjct: 331 HEEEQHGYPGTREVDRNGFEETLKAGDLWDVYRFMNPVEVEESESDSNALASTAKNPKYT 390
Query: 302 YRGK--------------RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 347
G +R ++S + I +CE+ G +L+ F G H PV L
Sbjct: 391 SIGTGAIYLVQTGDKCKCAVRTTLALMSTKFLRNIKSCEILGTMADLKPF-GWRHLPVGL 449
Query: 348 EL 349
L
Sbjct: 450 TL 451
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 147/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K F +F D D+ +QE +M E++ D
Sbjct: 1 MKLVSWNVNGIRACMKKG---FMDFFQAIDADIFCIQETKMQPG--------QLEIETD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y + + AD K Y+G + KK +P VS+ L +
Sbjct: 49 --------------------GYVQYMNSADKKGYSGVMVFSKK--EPLSVSYGLGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E++TFYL+ Y PN+ K+ R +W+ + ++ + K ++ C
Sbjct: 85 HDHEGRVITCEYDTFYLVCVYTPNS--KDGLLRLDYRMQWEDAFRAYLQRLKESKSVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G +D+Y
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLSSG-FVDSY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ +K+ + WS + + RIDYF+VSE+ K+RI E Q H YG
Sbjct: 187 RYLYPDKENVYSW-WSYRFSAREKNAGWRIDYFLVSEDAKERIE--EAQIH----TDIYG 239
Query: 340 SDHCPVSLELSE 351
SDHCPVSL +
Sbjct: 240 SDHCPVSLSFKD 251
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 63/290 (21%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F+ F+ PD+I LQE +M R + F
Sbjct: 5 FAEFLQEAAPDIICLQETKM-----------------------------QREQADFVFPG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y+ +W+ A+ K Y+GTA+ K +P V++ L + +++ +GRVI EF +FYL+ Y
Sbjct: 36 YEEYWNSAERKGYSGTAVFTK--VKPLAVTYGLGQE--EHDKEGRVITLEFASFYLVTVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ K+ R W+ + ++ + K P++ CGDLNV+ EEID+ +P
Sbjct: 92 TPNS--KDGLARLDYRMVWEDVFRAYLQELDAKKPVVVCGDLNVAAEEIDLKNP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 299
K + GFT ER +F LK D++R+LH E + +S WS
Sbjct: 144 ---------KTNRRNAGFTDEERAKFRE-LKAAGFTDSFRYLHPE---EVKYSWWSYRFK 190
Query: 300 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+VS+ + D++ + E+ +GSDHCPVS+EL
Sbjct: 191 AREKNAGWRIDYFVVSDRIADKLQSAEIHNE------VFGSDHCPVSIEL 234
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVAC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 239 -----GSDHCPVVLFLN 250
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 143/313 (45%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + + F +F + D +QE + A + A
Sbjct: 1 MKFISWNVNGIRACLGKG---FLDFFHQIEADFFCIQETKCQAGQVELA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 47 ------------------LDGYEQYWNYAQKKGYSGTAIFTKHT--PLSVKYGVGDE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GR+I E+E FYL+N Y PN + + R W++ + ++ S KP+++C
Sbjct: 85 SQDEGRIITLEYEDFYLVNVYTPNA--QRDLARLPLRLTWEEHLASYLQDLNSKKPVVYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + K + G GFT ER +F +L G +D++
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSELLASG-FVDSF 186
Query: 280 RFLH-KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
R+ H E D F+W + + K R + + RIDYFIVSE+LK++I + H
Sbjct: 187 RYKHPNETDH---FTW-WSYMNKVRERNIGWRIDYFIVSEQLKNQINQATIHPH------ 236
Query: 337 FYGSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 237 IMGSDHCPIELQL 249
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 75/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 239 -----GSDHCPVVLFLN 250
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 1 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 53 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 84 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD+NV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +++ + WS + + RIDYF VSE LK+R+ ++ L
Sbjct: 186 FRYFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVM 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 239 GSDHCPIELDM 249
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F F D D+ LQE ++ A EL
Sbjct: 1 MKLISWNVNGIRACVQKG---FLEFFREADADIFCLQETKLQAG--------QIEL---- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +W+ A K Y+GTA+ KK +P +++ + +
Sbjct: 46 -----------------DLEGYEQYWNYAVKKGYSGTAVFTKK--KPLNMTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L G
Sbjct: 187 RYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ L+L
Sbjct: 240 SDHCPIELDL 249
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + V+ F +F T D D+ +QE +M + D P HQ
Sbjct: 3 MKFVSWNVNGIRACVQKG---FLDFFTEADADIFCIQESKMQEGQLELDLPGYHQ----- 54
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ KK +P V++ +
Sbjct: 55 -------------------------YWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIE 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 86 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 143
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD+NV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 144 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDT 187
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +++ + WS + + RIDYF VSE LK+R+ ++ L
Sbjct: 188 FRYFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVM 240
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 241 GSDHCPIELDM 251
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +P+ I D D + LQE +M AG DA
Sbjct: 1 MKFISWNVNGLRAVFTKGFPD---IIKELDADFVCLQETKM-QAGQLDA----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+Y +W+ A K Y+GTA+ + +P VS+ + +
Sbjct: 46 -----------------DLPSYISYWNYAVKKGYSGTAIYTRH--EPLSVSYGIGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+L+ Y PN+ +++ R W+ + ++ KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFLVTVYTPNS--QDDLRRLDYRMTWEDAFRSYLKGLDAKKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KSNRRNAGFTDEERGKLQELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ D WS + R RIDYF+ SE L R +QG I E YG
Sbjct: 187 RYFYPDQ-ADIYSWWSYRFKARERNSGWRIDYFVASERLAPR-----LQGAAIHTE-IYG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L L
Sbjct: 240 SDHCPVELIL 249
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L R + F + D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGL--RAVDG-KGFRDIFRAIDADFFCLQETKM------------QEGQLDI 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K K +S + +
Sbjct: 46 -----------------AFDGYESYWNYAEKKGYSGTAIFTKH----KPLSVQIGLGIDE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E + FYL+ Y PN+ ++E R W++ Q + + KP+I C
Sbjct: 85 HDHEGRVITLELDDFYLVCVYTPNS--QDELRRLDYRMIWEEAFQAHLHKLDAHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G ID +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ H D+ +S WS + + RIDYF+VSE LK R++ +
Sbjct: 187 RYFH--PDLTGAYSWWSYRFRAREKNTGWRIDYFLVSERLKPRLVEANIHN------DIM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVELIL 249
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 142/313 (45%), Gaps = 59/313 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L K ++ DPDVI QE T
Sbjct: 61 MKLISWNLNGLNAVHKKG--HLVKYVRDEDPDVICFQE---------------------T 97
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K + + P ++ W S+ YAGTA K +P V++ + +
Sbjct: 98 KTQTSTAIAQLLGNDYP----HEYWNHSVNKLGYAGTATFSK--VKPVSVTYGI--GIAE 149
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF+ FYL+NTY PN G K E + R++W+K ++ KP++WC
Sbjct: 150 HDGEGRVITTEFDRFYLVNTYIPNAGQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVWC 207
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H +ID+++P K + GFT ER+ FG +L+ G +D +
Sbjct: 208 GDLNVAHHDIDIANP---------------KTNQKTAGFTKEERRDFGQLLESG-FVDTF 251
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R H+ D+ WS + + R+DYF+VS KD + C+ G
Sbjct: 252 R--HQNPDLQQFTYWSNRFNCRAKNLGWRLDYFVVS---KDFLPECDKS---FVRPNALG 303
Query: 340 SDHCPVSLELSEA 352
SDHCP+ L + +A
Sbjct: 304 SDHCPIGLLVRKA 316
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHQADADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A+ K Y+GTA+ K+ +P V++ + +
Sbjct: 39 ---QEGQLQL-------ELEGYHQYWNYAEKKGYSGTAVFTKE--EPLSVTYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EF FY Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDKEGRLITLEFPEFYFATVYTPNS--QNELARLDYRMQWETDFLAYMKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER +FG +L G ID +
Sbjct: 143 GDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFGELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + DM+ +S WS + + RIDYF VSE L++R+ ++ L +
Sbjct: 187 RYFY--PDMEGIYSWWSYRFRAREKNAGWRIDYFCVSESLRERLADAKI------LTYIF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 GSDHCPVELDL 249
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 143/325 (44%), Gaps = 69/325 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF------ITTFDPDVIALQEVRMPAAGSKDAP-KNH 94
+KF++WN +S+ + + +PD +A+QE ++ SK+ P K H
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRAVLKKLAALEPDAVAIQETKL----SKNGPTKKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
++ D F YQ+ W A YAGT L ++ +QP +
Sbjct: 57 LQVLADL------------------FPGYQVAWRSSVEPARKGYAGTMYLYREQYQPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 207
S+ + +GR+I EF F+L Y PN+G N +R R +WD +++
Sbjct: 98 SYPQIGAPEPMDSEGRIITLEFPDFFLTEVYTPNSG-----NGLKRLAEREQWDDCYRDY 152
Query: 208 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERTHF 197
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 324
G +L G D++RFLH D +SW + K RIDY+++S+ L DR+ +
Sbjct: 198 GKLLDAG-FTDSFRFLH--PDQAGAYSWWAQRVLTSKQNNSGWRIDYWLISDRLADRVSS 254
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 255 STMIDSGER------RDHTPIMLEI 273
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARNKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDTLG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 33/270 (12%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 140
+ A K+ ++ Q+L D +E KL + P Y +W+ A K Y+GTA+
Sbjct: 12 LRAVLGKNFMEDFQKLNADIFCLQETKLQEGQIHLDLP--GYFQYWNYAIKKGYSGTAIF 69
Query: 141 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
K+ +P V + + T +++ +GRVI EF+ +YL+ Y PN+ + E R ++
Sbjct: 70 TKE--EPLSVQYGIGIT--EHDQEGRVITLEFKDYYLITVYVPNS--QNELKRLPYRMEF 123
Query: 201 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
+ F+L K P+I+CGDLNV+HEEID+ +P+ LN GF+
Sbjct: 124 EDAFLNFILNLEKKKPVIYCGDLNVAHEEIDLKNPD---TNHLNA------------GFS 168
Query: 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 319
ER +F +L G L D++R+ + +K+ + + WS + R RIDYF+VS +LK
Sbjct: 169 DEERAKFSRVLSSGYL-DSFRYFYPDKEEEYSW-WSYRTKARDRNVGWRIDYFVVSVKLK 226
Query: 320 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
D++++ + + GSDHCPV + L
Sbjct: 227 DKLLSASIH------QEVMGSDHCPVEITL 250
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 141/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK +F+ D D ++QE +M + D P HQ
Sbjct: 1 MKFISWNVNGLRAVVKK---DFAATFNKLDADFFSIQETKMQEGQLELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTAL K+ +P V + ++
Sbjct: 53 -------------------------YFNYAERKGYSGTALFAKQ--EPMSVMYGIQSDEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+E GR I E+ FYL+ +Y PN+G + F R WD Q+++ + KP+I
Sbjct: 86 DHE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWDAAFQDYLSRLDKEKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ +P+ + GFT ER F L G +D+
Sbjct: 142 CGDLNVAHKTIDLKNPQ---------------SNHHNAGFTDEERDSFTRFLDMG-FMDS 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R H DM+ +S WS + R RIDYF+ S L +I ++ L
Sbjct: 186 FR--HFYPDMEDIYSWWSYRFHARDRNAGWRIDYFVTSNRLAPKIADSKI------LTDI 237
Query: 338 YGSDHCPVSLEL 349
YGSDHCPV+L L
Sbjct: 238 YGSDHCPVALIL 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 145/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V+ + E ++ D+I +QE ++ AG D
Sbjct: 3 KLISWNVNGLRACVEKGFVESMQHLSA---DIICIQESKL-QAGQID------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W+ A K Y+GTA+ K +P +V++ + +
Sbjct: 46 ------------LDLPGYCQY---WNYARKKGYSGTAIFSK--IEPLRVTYGMNMP--DH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I AEF +YL Y PN+ ++ R+ W++ ++ + KP+I CG
Sbjct: 87 DQEGRLITAEFPDYYLCTVYTPNS--QDGLKRLVYRQSWERDFLTYLQELRRVKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P AA + N PGFT ER F +L G +D +R
Sbjct: 145 DLNVAHREIDLKNP---AANRKN------------PGFTDEERAEFQTLLDAG-FVDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + EK + + WS + R RIDYF+VS EL DR +Q I E F GS
Sbjct: 189 YFYPEKPEEYSW-WSYRFNARSRNAGWRIDYFLVSNELTDR-----LQSASIHQEIF-GS 241
Query: 341 DHCPVSLEL 349
DHCPV L L
Sbjct: 242 DHCPVELIL 250
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 142/312 (45%), Gaps = 69/312 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFD---PDVIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N L + NF+ FD D LQE ++ A +
Sbjct: 4 KFISWNVNGLRAVMG------KNFMEAFDSLGADFFCLQETKLQAGQIE----------- 46
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+ P +K Y W+ A K Y+GTA+ K +P VS+ +
Sbjct: 47 ---------------MDLPGYKEY---WNYAQKKGYSGTAIFTKH--EPLSVSYGI--GI 84
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GRVI E+ F+L+ Y PN+ + E R W+ + F++ K P+I
Sbjct: 85 EQHDTEGRVITLEYADFFLVTVYTPNS--QNELKRLDYRMAWEDDFRNFLVSLKAKKPVI 142
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGD+NV+HEEID+ +P +A + N GFT ER + +L G ID
Sbjct: 143 VCGDMNVAHEEIDIKNP---SANRRNA------------GFTDEERAKMTELLASG-FID 186
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ E D WS + R RIDYF+VS+++K RI ++ +
Sbjct: 187 TFRTLNPELK-DAYSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIHADIL----- 240
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 241 -GSDHCPVELEL 251
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + T D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVTLDADIIAIQETKLSAKGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ W A YAGT L K+ PK ++
Sbjct: 57 -------------LTILEEL----FPNYQHTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTTL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DKEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 145/323 (44%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F NY W A YAGT L K P+
Sbjct: 58 EV-----------LAEM-------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSL-EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PTIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 327
LK G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 201 LKLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 258 IDTGDR------KDHCPIMLEIN 274
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 164/344 (47%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + + P L D +T+ K LK +WN + L +K + +++
Sbjct: 33 EKEAAGEGPFLYEDAPDNKTSP-----GGKLATLKICSWNVDGLRAWIKK---KGLDWVK 84
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P Q+L P +Q W +
Sbjct: 85 EEAPDILCLQETK---CSENKLPAELQDL---------------------PGLTHQYWSA 120
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 175
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WDK +F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 176 -RGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGDLNVAHEEIDLRNPK----------- 223
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 224 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTPYAYTF-WTYMMNARAKNVG 278
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 WRLDYFLLSHSLLSSLCDSKIRSKAL------GSDHCPITLYLA 316
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 146/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKLISWNVNGIRACVQKG---FLDFFHEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L + Y +W+ A K Y+GTA+ KK +P VS+ L +
Sbjct: 39 ---QEGQLNL-------ELERYHQYWNYAVKKGYSGTAVFTKK--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R KW+ + ++ + KP+I
Sbjct: 85 HDQEGRVITCEFEDFYFVTVYTPNS--QSELARLDYRMKWEDDFRAYLKKLEKKKPVIVT 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L G
Sbjct: 187 RYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTEVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ L+L
Sbjct: 240 SDHCPIELDL 249
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F D D+ LQE T
Sbjct: 1 MKLISWNVNGIRACVKNG---FMDFFLKEDADIFCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
K +E+ PF Y +W+ A K Y+GTA+ K +P + + + K
Sbjct: 37 KIQKEQ----------IPFTLDGYYQYWNFAQKKGYSGTAIFSK--IEPLNIVYGMGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL---QCSGKP 215
+++ +GR+I EFE FY++ YAPN+ + R KW+ +++ +C KP
Sbjct: 84 -EHDKEGRLITLEFEKFYVVTVYAPNS--QRGLARLDYRMKWEDDFLNYIIGLEKC--KP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I CGDLNV+H+E+D+ +P NK++ GFT ER +F ++ +G
Sbjct: 139 VIVCGDLNVAHKEMDLKNPS------------TNKKN---AGFTPEERSKFDEVINKG-F 182
Query: 276 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
+D +RF + +K + WS + RIDYF VS ELK ++ + + +
Sbjct: 183 VDTFRFFYPDKTQAYTW-WSYMFNARANNAGWRIDYFCVSAELKSQL------RNAVIYQ 235
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 236 DVLGSDHCPVGLEI 249
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 145
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K E KL N ++ L K Y G AL K+ +P + + L+ +
Sbjct: 146 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDN--V 189
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I
Sbjct: 190 EFDSEGRLITAEYSNFYLINVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVII 247
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H++ID+ +P+ NK++ GFT ER L G +D
Sbjct: 248 CGDMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFLDAG-FVDT 291
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ K+ F WS + + R+DYF+VSE++KD + C+ + + Y
Sbjct: 292 FRALYPNKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD----NVIRDKVY 344
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L ++
Sbjct: 345 GSDHCPIVLYIN 356
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ KP++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLFL 249
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F NF D D+ LQE ++
Sbjct: 3 KLISWNVNGLRACVTKG---FENFFKDVDADIFCLQETKL-------------------- 39
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E ++ L+ + Y +W AD K Y+GTA+ K+ +P V + + ++
Sbjct: 40 --QEGQIDLL-------LEGYHQYWCYADKKGYSGTAMFTKE--EPLNVCYGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEF+ +++ Y PN+ + E R KW+ + ++ + KP+I CG
Sbjct: 87 DHEGRVITAEFDNCFVVTCYTPNS--QSELKRLDYRMKWEDDFKAYLKKLEEKKPVIMCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + A+L +G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERSKMTALLDDG-FIDTYR 188
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + D + +S WS + + RIDYFIVS+ L+ + + G I E G
Sbjct: 189 YFY--PDTEGVYSWWSYRFKAREKNAGWRIDYFIVSKALESK-----LDGAKIHTE-ILG 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELTI 250
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN + + +K N E+ + D D+IALQE + D
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEY---MLKEDADIIALQETKC----------------DKN 122
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K E KL N ++ L K Y G AL K+ +P + + L+ +
Sbjct: 123 KLPEEVKL------------NGYHYYFLESKKPGYCGVALYTKE--KPIDIKYGLDN--V 166
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V KP+I
Sbjct: 167 EFDSEGRLITAEYSNFYLVNVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKKPVII 224
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H++ID+ +P+ NK++ GFT ER L G +D
Sbjct: 225 CGDMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFLDAG-FVDT 268
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ +K+ F WS + + R+DYF+VSE++KD + C+ + + Y
Sbjct: 269 FRALYPDKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD----NVIRDEVY 321
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L ++
Sbjct: 322 GSDHCPIVLYIN 333
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D D+ +QE +M P + P HQ +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFNEIDADIFCIQETKMQPGQLEIETPLYHQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y+GT + K+ +P VS+ L +
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--EPIHVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ + + K ++ C
Sbjct: 85 HDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMEWEDAFRTYLHKLNETKSVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L G ID+Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERNKMSVLLDSG-FIDSY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E++ + WS + + RIDYF+VSE+ KD I ++ YG
Sbjct: 187 RYLYPEQEGVYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDGIREAKIH------TDIYG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSLE
Sbjct: 240 SDHCPVSLEF 249
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 144/320 (45%), Gaps = 59/320 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G K H+
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG---PSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ + S P NY W S A YAG KK F+P +S+
Sbjct: 58 EILE----------------SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPI-ISY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ + R+I EFE FYL Y PN G + R+ WDK+ ++ +
Sbjct: 100 PTLDAPDTMDQEARLITLEFENFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLD 157
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I CGD NV+H+EID+ HPE + GFT ER F +L
Sbjct: 158 QNKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLN 202
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+G +D +R+LH D++ ++W + K RIDYFIVS+ +K++I +M
Sbjct: 203 KG-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMID 259
Query: 330 HGIELEGFYGSDHCPVSLEL 349
G DH P+ + +
Sbjct: 260 SGDR------QDHTPIYINM 273
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 138/307 (44%), Gaps = 60/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ F++WN N L VK N+ EF N I D D +QE R+
Sbjct: 1 MNFISWNVNGLRSAVKKNFYEFFNEI---DADFFNVQETRV------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
E + L P YQ W S YAG K + + V + ++ T
Sbjct: 39 ---HENDIAL-----EVPGNYYQYWDSAERPGYAGVTTFTKH--KAQNVIYGVDGTDTDV 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
E GR + E+ FYL+NTY PN+G EE R WD++ FV + +G KP+I G
Sbjct: 89 E--GRCLTLEYPDFYLINTYVPNSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D++V+++ ID+ PE ED + G+T ER FG +L G +D +R
Sbjct: 145 DMSVAYQPIDIDDPE---------------EDHHKAGYTQQERDDFGRLLASG-FVDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
LH + + WS + R + R+DYF+VS+ +++ + + G+ + GS
Sbjct: 189 ALHPHQSGAYTW-WSYRYDERARDRGWRMDYFLVSDSIQNDVAESNILGNVM------GS 241
Query: 341 DHCPVSL 347
DH P+ L
Sbjct: 242 DHAPIQL 248
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V++ L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVTYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER + A+L+ G D +
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R ++ +K +D WS + R RIDYF+VS L+D I + G
Sbjct: 187 RHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLRDAIKEATI------YPDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ LE+
Sbjct: 240 SDHCPIGLEI 249
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 143/312 (45%), Gaps = 67/312 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F D DV +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFQAVDADVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A K Y+GTA+ ++ +P V++ + +
Sbjct: 54 ------------------------YWNYARKKGYSGTAVFTRE--EPISVAYGIGME--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ KP+I+C
Sbjct: 86 HDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLSYLKGLEKNKPVIFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-FIDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + DM+ +S WS + + RIDYF VSE LKDR+++ +
Sbjct: 188 RYFY--PDMEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIH------TDIM 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELVVN 251
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 164/344 (47%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK WN + +K + ++I
Sbjct: 34 EKEAVGEGAVLYEDPADQKTSPSG-----KSATLKICPWNVDGRRAWIKK---KGVDWIK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS P +Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSGLP---HQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+A ++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAGYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEE DV +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEESDVRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSLLPAVCDSKIRSKAL------GSDHCPITLYLA 317
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 147/313 (46%), Gaps = 71/313 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L V F +F D DV +QE ++ QE + D
Sbjct: 3 KFISWNVNGLRACVGKG---FLDFFKEIDADVFCIQESKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W+ A K Y+GTA+ ++ +P VS+ + ++
Sbjct: 46 ------------LDLPGYHQY---WNYALKKGYSGTAMFTRE--EPLSVSYGIGME--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLI 217
+ +GRVI AEF +Y++ Y PN+ ++ R KW+ +F+ G KP++
Sbjct: 87 DTEGRVITAEFPDYYVVTCYTPNS--QDGLARLDYRMKWE---DDFLAYLKGLEKKKPVV 141
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 FCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-FID 185
Query: 278 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R+ + D + +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 186 TFRYFY--PDAEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVM---- 239
Query: 337 FYGSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 --GSDHCPVELVM 250
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 148/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTIYTPNSRRGLERIDY--RMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F +L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRKNAGFSDQERGAFSRLLEAG-YVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + GI +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQI-----EDAGIS-KDVM 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 218
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKVLELK-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P V + L K
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKK--KPLTVRYGL--GIEK 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+C
Sbjct: 85 HDQEGRVITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + +K + GFT ER +F +L G D Y
Sbjct: 143 GDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + RIDYF+ S+ L ++ ++ +G
Sbjct: 187 RYFYPSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKVLDQKLTDAQIHTE------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L+L
Sbjct: 240 SDHCPVELDL 249
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 156/321 (48%), Gaps = 60/321 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ ++ KK LK +WN + + +K + N++ DP ++ LQE++
Sbjct: 52 TSDDGKKYTLKISSWNVDGIRAWIKK---QGLNWVREEDPHIMCLQEIKC---------- 98
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKV 150
EKL+ P + + +W+ D K Y+G A+L K +P V
Sbjct: 99 -------------AEKLLPPEIKDMPEYPHK--YWACPDEKEGYSGVAMLCKD--KPLNV 141
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + +++ +GRVI AEF++F+L+ Y PN+ R++WD + ++
Sbjct: 142 TYGI--GIEEHDKEGRVITAEFDSFFLIAAYVPNSS--RGLVRLDYRQRWDVDFRAYLKG 197
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
S KPLI CGDLNV+H+EID+ +P K + PGFT ER+ FG +
Sbjct: 198 LDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQERQGFGEL 242
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ + +++
Sbjct: 243 LAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPALCDSKVRS 300
Query: 330 HGIELEGFYGSDHCPVSLELS 350
GSDHCP++L ++
Sbjct: 301 K------IMGSDHCPITLLMA 315
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N +K F + + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGYRAVMKKG---FMDAFNSLNADIFCLQEIKMKENQMTDE----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + Y +S + Y+GT + K +P VS+ + ++
Sbjct: 47 -------------MNIEGYHRYS--YSANKAGYSGTLVYTK--VEPIGVSYGIGID--EH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCG 220
+ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I CG
Sbjct: 88 DTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P+ N+ GFT ER + +L +G ID +R
Sbjct: 146 DLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTFR 189
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K + + WS + R RIDYF+VS++LKD ++ ++ + GS
Sbjct: 190 YFYPDKTDEYSY-WSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIH------QSIMGS 242
Query: 341 DHCPVSLELS 350
DHCPV LE++
Sbjct: 243 DHCPVELEIN 252
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDKEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 143/332 (43%), Gaps = 83/332 (25%)
Query: 42 LKFVTWNANSL-----------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPA 84
+KF++WN +SL LL +KN +PDVIALQE ++PA
Sbjct: 1 MKFISWNIDSLNAALTSDSKRAVMSRDVLLTIKNE-----------NPDVIALQETKLPA 49
Query: 85 AGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALL 140
G K H E KL S F +Y W A YAGT L
Sbjct: 50 NGPS---KKHVE-----------KL-------SEFFPDYDYVWISSRPGARKSYAGTMTL 88
Query: 141 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
KK K+ SF + +GR++ EFE FY Y PN G E R +W
Sbjct: 89 YKKGLDVKE-SFPEIGAPDTMDLEGRILTLEFEDFYFTQVYTPNAG--GELKRLPLREEW 145
Query: 201 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
DK +++ + KP+I GD NV+HEEID++HPE N ++ GFT
Sbjct: 146 DKLYADYLAELDKNKPVIATGDFNVAHEEIDLAHPE-------NNHM--------SAGFT 190
Query: 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEE 317
ER+ F +L G D +R H K+++ ++W + K RIDYF+VS+
Sbjct: 191 DEERRGFTNLLNRG-FTDTFR--HLNKNLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDR 247
Query: 318 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
L + +I + G DH P+ LE+
Sbjct: 248 LMEDVIDSTIIDSGDR------QDHTPIMLEI 273
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS------NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ P N I D D+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSPRAQLTRSVLNTIKEKDADIIAIQETKLRSTG---PTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F NY W A YAGT L K P+
Sbjct: 58 EVLAEI------------------FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTK 99
Query: 152 FSL-EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
++ + YE GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ +
Sbjct: 100 PAIGAPDTMDYE--GRILTLEFDNYYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQK 155
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I GD NV+H ID+ HPE + GFT ER+ F +
Sbjct: 156 LDKSKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 327
LK G D +R +H +++ +SW + K RIDY+IVS+ + D++ EM
Sbjct: 201 LKLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 258 IDTGDR------KDHCPIMLEIN 274
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F +FD D +QE +M
Sbjct: 1 MKLISWNVNGLRACVTKG---FKETFKSFDADFFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F Y+ +W+ AD K Y+GTA+ K +P V++ ++
Sbjct: 39 ---QEGQLDL-------QFDGYESFWNYADKKGYSGTAIYAKT--KPLNVTYGIDIDDHN 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+E GRVI E++ F+L+ Y PN+ + E R W+K Q ++ + KP+I C
Sbjct: 87 HE--GRVITLEYDNFFLVTVYTPNS--QNELKRLNYRMIWEKDFQTYLHKLDKRKPIIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDMNVAHQEIDIKNP---------------KTNHKSAGFTDEEREKMTQLLSNG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RF + E+ +S WS + + RIDYF+VS+ +K++++ ++
Sbjct: 187 RFKYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLVSDRIKEKVLDAKIH------TDIM 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 238 GSDHCPVELTI 248
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 146/308 (47%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ + +P++I +QE ++ + + E
Sbjct: 9 MKMISWNVNGIRACLKNG---FMDFLNSKNPEIICIQETKVQKGQVQLGLNGYFE----- 60
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ K +PK V + + T K
Sbjct: 61 ------------------------YWNYAEKKGYSGTAIFTK--IEPKSVKYGI--TNYK 92
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI EFE ++L+N Y PN+ + + R+KWDK + KP+I+C
Sbjct: 93 SDKEGRVITLEFEEYFLVNVYTPNS--QRGLKRLECRQKWDKDFLNHLKTLEQKKPVIFC 150
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K++ GFT ER F ++ G +D +
Sbjct: 151 GDLNVAHKEIDLKNP---------------KQNIKNAGFTKEERNGFDNLINSG-FLDTF 194
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ E + +S+ N K G RIDYF +S++L++R+ + G
Sbjct: 195 RELNNEPENYTWWSYRFNAREKNIG--WRIDYFCISKKLRERL------KDAFIMSEVLG 246
Query: 340 SDHCPVSL 347
SDHCPV +
Sbjct: 247 SDHCPVGI 254
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 139/317 (43%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P E I PDVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGASPRAELSREVLKMIREHQPDVIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
++ +A + ++ + P K Y AGT L KK + P+ V+F
Sbjct: 58 DI---IEADVPDYKVVWVSSVEPARKGY-----------AGTMFLYKKDYTPE-VTFPQI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 214
+ +GR+I EF FY+ N Y PN G + R+ WD + ++ K
Sbjct: 103 GAPTTMDYEGRMITLEFTDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADLDAKK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I CGD NV+H EID++HP K + GFT ER F +L G
Sbjct: 161 PVIACGDFNVAHTEIDLAHP---------------KNNHFSAGFTDEERAGFTNLLNRG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D++ ++W + K RIDY++VS+ + D++ EM G
Sbjct: 205 FTDTFRHIH--GDVEGVYTWWAQRVKTSKINNSGWRIDYWLVSDRIADKVQKSEMLDSGT 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPILLEI 273
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NVEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L +G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNDG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L ++ F +F D D+ ALQE ++ P + P HQ
Sbjct: 1 MKLISWNVNGLRACIQKG---FMDFFNEQDADIFALQETKLQPHQIELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W A+ K Y+GTA+ K+ +P V + ++
Sbjct: 53 -------------------------YWHSAERKGYSGTAVFTKQ--KPLSVRYDFDEAEG 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRVI EFE FY + Y PN+ KEE R +W+ + + + + KP+++
Sbjct: 86 EHPKEGRVITLEFEQFYFVTAYVPNS--KEELARLDYRMQWEDAMARHLAKLNETKPVVY 143
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GDLNV+ EEID+ +P K N + PGF+ ER++ +L G D
Sbjct: 144 TGDLNVAVEEIDLKNP------KTNHF---------NPGFSDQERQKMRDLLSLG-FADT 187
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ EK +S+ N K G RIDYFIVS+ L +++ + G +
Sbjct: 188 FRTLYPEKVEYSWWSYRFNSRAKNVG--WRIDYFIVSQRLMNQVKDSVIYGDIL------ 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV +E+
Sbjct: 240 GSDHCPVGVEI 250
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 146/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGLE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVITVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNNVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIG--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HNKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 67/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D DV +QE +M
Sbjct: 1 MKMISWNVNGLRACMTKG---FMDFFNTIDADVFCIQESKMH------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R+ S F Y +W+ A+ K Y+GT +L K + +S +
Sbjct: 40 -----------RSQSDFVFDGYYQFWNEAEKKGYSGTIILSK----TEPLSVCNDMGIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I+AE+ TF+L+N Y PN+ K E R++W+ + F+ KP+I C
Sbjct: 85 HDKEGRIIVAEYATFFLVNVYTPNS--KRELERLTYRQEWEDDFRSFLKGLEQYKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G ID+Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FIDSY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + +K+ ++W + +GK R RIDYF++S R +A ++ I E
Sbjct: 187 RYFYPDKEH--AYTW-WSYMGKARQNNTGWRIDYFLLS-----RCLAKNLKEAHIYPE-I 237
Query: 338 YGSDHCPVSLELSE 351
GSDHCPV + + E
Sbjct: 238 MGSDHCPVGIVIDE 251
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + E+ N ++ D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACLKKGFLEYFNEVS---GDIFCVQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K QP V + + + K
Sbjct: 45 -------------LELPGYFQY---WNYAEKKGYSGTAIFTK--IQPLTVQYGIGEA--K 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI EF +YL+N Y PN+ + E R +W+ + +++ S KP+I C
Sbjct: 85 HDKEGRVITLEFCDYYLVNVYTPNS--QRELARLDYRLQWEDAFKNYLVNLDSEKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ NK + GFT ER + +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNPK------------NNKRN---AGFTEEERNKLTELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D + ++ WS + R RIDYF+ S++L + + E+
Sbjct: 187 RYFY--PDTEGAYTWWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIHAD------IM 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV+L+L+
Sbjct: 239 GSDHCPVALKLA 250
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSIDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 140/310 (45%), Gaps = 66/310 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KFV+WN N L V +F+ T + D LQE +M A G D
Sbjct: 3 KFVSWNVNGLRACVSK---DFAQTFETLNADFFCLQETKMQA-GQLDLQ----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
F Y +W+ AD K Y+GTA+ +K +P V++ + ++
Sbjct: 48 -----------------FPGYTSFWNYADKKGYSGTAIYARK--EPLSVAYGIGID--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI E+E FYL+N Y PN ++ R W+ Q ++ + KP+I CG
Sbjct: 87 DHEGRVITLEYEDFYLVNVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDARKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+HEEID+ +P K + GFT ER + +L G D +R
Sbjct: 145 DMNVAHEEIDLKNP---------------KTNHRNAGFTDEERAKMTQLLGNG-FTDTFR 188
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
L+ E +S WS + + RIDYF++S+ L+ R+ + +G
Sbjct: 189 NLYPEA---IKYSWWSYRFRAREKNTGWRIDYFLISDRLRPRLKEAAIHNE------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV ++L
Sbjct: 240 SDHCPVEVDL 249
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +V + + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIGNN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HDGEGRVITLKFDEYYLVNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+E+D+ +P K + GFT ERK F I+ G +D +
Sbjct: 143 GDLNVAHKEVDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELE 335
R +KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 187 REFNKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRGNLKDAFIMPEIM------- 237
Query: 336 GFYGSDHCPVSL 347
GSDHCPV +
Sbjct: 238 ---GSDHCPVGI 246
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 147/312 (47%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PDV+ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLKRESPDVMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +V + ++ + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIKNS--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+ +GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HNGEGRVITLKFDEYYLVNVYTPNS--QRGLTRLKYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ERK F I+ G +D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELE 335
R +KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 187 REFNKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRNNLKDAFIMSEIM------- 237
Query: 336 GFYGSDHCPVSL 347
GSDHCPV +
Sbjct: 238 ---GSDHCPVGI 246
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRISYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKERAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + ++ H L
Sbjct: 59 IKIISWNVAGLRALIKKSG---HSVLVEENPDIVALQETKCVEVPNELQNGYHTFLNASE 115
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTA 158
K S + G LL K+ +P KV+++ + K
Sbjct: 116 K-----------------------------SGHGGVLLLTKE--EPIKVAYTFDDKSKCV 144
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+ GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 145 VDGNGKGRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPVV 202
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 203 YVGDLNVAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FVD 247
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 248 VFRRLNPDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHSI 300
Query: 338 YGSDHCPVSLEL 349
GSDHCP+SL +
Sbjct: 301 KGSDHCPLSLTI 312
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 70/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V F TF D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRAVVGKG---FVESFETFGADFFCLQETKM-QAGQLDI----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y+ +W+ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 46 -----------------SFPGYESYWNYAEKKGYSGTAIFTK--YKPLSVTYGMNID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
++ +GR+I E E F+L+ Y PN+ ++ R +W+ ++ L C KP+I
Sbjct: 85 HDHEGRIITLEMEQFFLVTVYTPNS--QDGLRRLDYRMQWESDFLAYLTSLDCR-KPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+HEEID+ +P+ N+ + GFT ER++ +L G +D
Sbjct: 142 CGDMNVAHEEIDLKNPQ------------NNRRN---AGFTDEERQKMTTLLASG-FVDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R LH E+ +SW K R K + RIDYF++SE L +++ +
Sbjct: 186 FRTLHPEEQ---KYSWWSYRF-KAREKNVGWRIDYFLISERLVPQLVEATIHAE------ 235
Query: 337 FYGSDHCPVSLELS 350
GSDHCPV L L+
Sbjct: 236 IMGSDHCPVELVLN 249
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L V+ F + D D+ +QE +M QE + D
Sbjct: 1 MKLVSWNVNGLRACVQKG---FQDIFREIDADIFCVQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ YQ W Y+GTA+ K+ +P V++ + ++
Sbjct: 46 ELD----------------GYYQYWNYAVKKGYSGTAVFTKQ--EPIGVTYGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EFE FY + Y PN+ + E R +W+ + ++ KP++ G
Sbjct: 86 DQEGRVITCEFEDFYFVTVYTPNS--QNELKRLDYRMRWEDDFRAYLKALDEKKPVVVTG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H EID+ +P+ N+++ GFT ER +F +L G ID +R
Sbjct: 144 DMNVAHAEIDLKNPK------------SNRQN---AGFTDEERGKFTELLDAG-FIDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + + RIDYF VSE +KDR+ ++ L YGS
Sbjct: 188 YFYPDQEGIYSW-WSYRFKAREKNAGWRIDYFCVSERMKDRLSDAKI------LTDIYGS 240
Query: 341 DHCPVSLEL 349
DHCPV LEL
Sbjct: 241 DHCPVCLEL 249
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSHPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F D DV LQE +M
Sbjct: 1 MKFISWNVNGLRACLKKG---FMESFCKLDADVFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ E+ IL P +K Y W+ A+ K Y+GTA+ + +P V++ L +
Sbjct: 39 ---QPEQAIL----DLPGYKQY---WNSAEKKGYSGTAVFSR--IEPLHVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF +L+ Y PN+ K E R +W+ + ++++ KP+I C
Sbjct: 85 HDHEGRVITLEFPEMFLVTVYTPNS--KRELERLAYRMEWEDAFRAYLMKLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +FG +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNHHNAGFTDEERGKFGELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ ++ + WS + RIDYF+ S+ L+++I + +G
Sbjct: 187 RTLYPDRTGIYTW-WSYLRKARDNNAGWRIDYFVASKRLQEKIQDATIHNE------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 139/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L +K +PE D D+ LQE ++ A + D P
Sbjct: 1 MKFISWNVNGLRAVMKKGFPEI---FKELDADIFCLQETKLQAGQIEMDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ AD K Y+GTA+ + +P VS+ +
Sbjct: 49 ---------------------GYEQYWNYADKKGYSGTAIFTR--IKPLSVSYGMNID-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I EFE FY + Y PN+ + E R +W+ + +V + + KP+I+
Sbjct: 84 EHDHEGRLITLEFEDFYFITCYTPNS--QSELARLDYRMRWEDDFRNYVTELNRTKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K+ + WS + RIDYFI S L R+ +
Sbjct: 186 WRYFYPDKEGVYSW-WSYRFKARQNNSGWRIDYFITSSALDSRL------KEALIYTNIE 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 239 GSDHCPVGLVI 249
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 142/309 (45%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K+V+WN N + +K F + D D+ ALQE T
Sbjct: 1 MKYVSWNVNGIRACLKKG---FLESFKSLDADIFALQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA +++ L P Y ++ + A K Y+GTA+L + +P VS+ + +
Sbjct: 37 KAQKDQI-----DLDIP---GYTLYTNDAIKKGYSGTAILTR--MKPLSVSYGIGIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCG 220
Y+ +GRVI EFE +Y + Y PN+ K+E R +W+ + L KP+I CG
Sbjct: 85 YDQEGRVITLEFEDYYFVPCYTPNS--KKELARIDYRMEWEDAFLAY-LDALNKPVILCG 141
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P + GF+ ER + +L G ID +R
Sbjct: 142 DLNVAHHEIDLKNP---------------SSNHHNAGFSDQERSKMTELLSHG-YIDTFR 185
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+L+ +K D WS + R RIDYFIVSE LK+RI + GS
Sbjct: 186 YLYPDKK-DAYTWWSYMFKSRERNAGWRIDYFIVSESLKERI------KESLIYSDILGS 238
Query: 341 DHCPVSLEL 349
DHCP+ LE+
Sbjct: 239 DHCPIGLEM 247
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN N + R N ++ +PD++ LQE T
Sbjct: 1 MKLATWNVNGI--RSVLNKGALQEYVLESNPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA +++ + M F Y+++++ A K Y+GTA+ K+ +P V + + +
Sbjct: 38 KAQQDQVELGME------FSEYEVFFNSAVKKGYSGTAIFTKE--KPLSVEYGI--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+E FYL+ Y PN K + + + R+ W+ F+ + KP+I+C
Sbjct: 88 HDQEGRVITAEYEKFYLVTVYTPNA--KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIFC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P K + GFT ER +F ++ L+DA+
Sbjct: 146 GDLNVAHKEIDLANP---------------KTNTMNAGFTKEERAKFDQVVN-NDLVDAF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+L+ D +SW + +G R + + RIDYF++S+ L + +++
Sbjct: 190 RYLY--PDTLGAYSW-WSYMGGARARNVGWRIDYFVISQPLTAFLQEVKIRSD------V 240
Query: 338 YGSDHCPVSLEL 349
GSDHCPV +++
Sbjct: 241 TGSDHCPVEMKI 252
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 146/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F +F D D+ +QE +M H + D
Sbjct: 1 MRLISWNVNGLRACMNKG---FMDFFRQIDADIFCIQESKM-----------HPDQADFV 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+G +L K+ +P V + +
Sbjct: 47 ------------------FDGYHGYWNSAEKKGYSGVVVLSKQ--EPLCVEYDM--GIEH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ FYL+N Y PN+ K E + R +W+ F+ KPLI C
Sbjct: 85 HDKEGRVICAEYPDFYLINVYTPNS--KRELERLEYRMQWEDDFLNFLKNLERKKPLIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLENG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + D++ +SW + +G+ R RIDYF+ SE L+ R+I ++ +
Sbjct: 187 RYFY--PDLEGAYSW-WSYMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEIL----- 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L +S
Sbjct: 239 -GSDHCPVGLVIS 250
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYALKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ I FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQNIF-------EFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 143/311 (45%), Gaps = 61/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE-FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K ++WN N + W + F + + D+ LQE++M D
Sbjct: 1 MKLISWNVNGY----RAVWKKGFKEAFDSLNADIFCLQEIKMKENQMTDE---------- 46
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +S + Y+GT + K +P VSF + +
Sbjct: 47 --------------MEIEGYHRYS--YSANKAGYSGTLVYTKT--EPIGVSFGIGID--E 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
++ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I C
Sbjct: 87 HDTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIVC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P+ N+ GFT ER + +L +G ID +
Sbjct: 145 GDLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDTF 188
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K + + WS + R RIDYFIVS++LKD ++ ++ + G
Sbjct: 189 RYFYPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH------QSIMG 241
Query: 340 SDHCPVSLELS 350
SDHCPV LE++
Sbjct: 242 SDHCPVELEIN 252
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + F +F + D D+ +QE +M
Sbjct: 8 KLISWNVNGIRACAGKG---FMDFFNSIDADIFCIQESKM-------------------- 44
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+E +L L P + Y W+ AD K Y+GTA+ K+ K +S + ++
Sbjct: 45 --QEGQL----TLDMPGYYQY---WNYADKKGYSGTAIFTKE----KSLSETKGIGIDEH 91
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI E+E FY++ Y PN+ + E R KW+ + ++ + KP+I CG
Sbjct: 92 DHEGRVITLEYENFYMVTVYTPNS--QNELARLDYRMKWEDDFRAYLKKLEENKPVIVCG 149
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+H EID+ +P K + GFT ER++ +L +G ID +R
Sbjct: 150 DMNVAHNEIDLKNP---------------KTNRKNAGFTDEEREKMTVLLDDG-FIDTFR 193
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + + RIDYF+ SE LKD++I ++ GS
Sbjct: 194 YFYPDQENIYSW-WSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIH------TDIMGS 246
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 247 DHCPVELDI 255
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFELFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKMRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPDG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGIGIE--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F +L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRLLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R R+DYF+VSE L+++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIEDASISADVM------ 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELMIN 251
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRISWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 145/322 (45%), Gaps = 59/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP-EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
+K V WN N L +K + ++ DPD+ L E
Sbjct: 1 IKIVAWNVNGLRAILKRDESVHLRAYVAQEDPDIFCLSE--------------------- 39
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV---------- 150
TK R+E L + P +Q W YA TA+ K +P V
Sbjct: 40 TKICRDE---LQKIEDFLPQYEHQYWSCAVKKGYASTAIFSKT--KPLSVKDEIIVGDHD 94
Query: 151 SFSLEKTA-LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEFV 208
S + K+A + +GR + E+ F+L++TY PN G K E F R +WDK ++E
Sbjct: 95 SKGVSKSANSGKDQEGRFLALEYPKFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREMK 153
Query: 209 LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP++WCGDLNV+H+EID+ +P+ NK GFT ER+ FG
Sbjct: 154 EMEKTKPVVWCGDLNVAHQEIDIHNPK------------GNKR---SAGFTDEERESFGN 198
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
IL+ G +D +R LH +K F + N + +G R+DYF+VSE+L +++
Sbjct: 199 ILENG-FVDTFRHLHPDKVEYSYFGYRHNMRAQNKG--WRLDYFVVSEKLMPNVVSVFGW 255
Query: 329 GHGIELEG-FYGSDHCPVSLEL 349
+ G GSDH P+ LEL
Sbjct: 256 ERSSYIRGSVVGSDHLPIGLEL 277
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 148/310 (47%), Gaps = 63/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F +F D D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDFFKESDADIFCIQETKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L F +Y W+ A+ K Y+GTA+ K+ K+ +E+ +
Sbjct: 46 ------------LDLDGFNSY---WNYAEKKGYSGTAVFTKEEPLSVKIGIGIEE----H 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRV+ EF FYL+N Y PN+ K+ R W+ ++++ + K P+I CG
Sbjct: 87 DNEGRVLTLEFNDFYLVNVYTPNS--KQGLERLDYRMVWEDVFRQYLKELEKKKPVILCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER++ +L G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KVNRKNAGFTDEEREKITQLLDSG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
F + +K+ + WS + RIDYF+VSE LKD++ ++ +++E GS
Sbjct: 189 FFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIH---MDIE---GS 241
Query: 341 DHCPVSLELS 350
DHCPV L ++
Sbjct: 242 DHCPVELLIN 251
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 143/314 (45%), Gaps = 68/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K F +++ D DVI LQE +K P + Q
Sbjct: 1 MKLVSWNVNGVRAVLKKG---FLDYMGKVDADVICLQE-------TKAHPGDVQH----- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ A +P W+S Y+GTAL + P KV+F + +
Sbjct: 46 --------VAWTAGYTPH------WYSAVKKGYSGTALFTR--VAPLKVNFGIGLPG--H 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWC 219
+ +GRVI AEF F+L+N Y PN+ + R +WD F+ L+ GKP+++C
Sbjct: 88 DDEGRVITAEFADFFLVNVYQPNSQRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVFC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P K + GFT ER F +L G +D +
Sbjct: 147 GDLNVAHQEIDLTNP---------------KTNRRNAGFTDEERANFSKLLASG-FVDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELE 335
R EK WS + R R+DYF+ SE+LK + I+ E+
Sbjct: 191 REF--EKGPGHYTWWSQMMNCRARNIGWRVDYFVASEKLKPALKRAWISPEVM------- 241
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 242 ---GSDHCPVGLEL 252
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F + DV +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREAEADVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 54 ------------------------YWNYARKKGYSGTAMFTKE--EPVSVSYGIGME--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++C
Sbjct: 86 HDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEENKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G +D +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 188 RYFY--PDLEGTYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------ 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 GSDHCPVELVI 250
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 32/233 (13%)
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
K Y +W YAG A+ KK P VS+ L + + DGR++ AE+E FYL+
Sbjct: 137 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVSYGLGDA--EQDEDGRLLTAEYEKFYLVC 192
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 238
Y PN G K + +R +WD++ +++ K P+I CGD+NV+H EID+++P+
Sbjct: 193 VYVPNAGRKLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPK--- 247
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGN 297
NK++ GFT ER +L G +D +R + E+ F ++ GN
Sbjct: 248 ---------TNKKN---AGFTQEERDGMTNLLSHG-FVDTFRQRYPEQKAAYTFWTYMGN 294
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
K G R+DYFI SE L R++ ++ G YGSDHCP++L L+
Sbjct: 295 ARAKNVG--WRLDYFIASERLAGRVVDSVIR------PGVYGSDHCPITLLLN 339
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVITFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFSKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 144/320 (45%), Gaps = 59/320 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N + S + I D D+I LQE ++P G
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
S++ K IL S P NY W S A YAG KK F+P +S+
Sbjct: 52 -------PSKKHKQILE---SYFPQYNYA-WISSQEPARKSYAGCLTFYKKEFEPI-ISY 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ + R+I EF+ FYL Y PN G + R+ WDK+ ++ +
Sbjct: 100 PTLDAPDTMDQEARIITLEFDNFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLD 157
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I CGD NV+H+EID+ HPE + GFT ER F +L
Sbjct: 158 QNKPVIACGDFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLN 202
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+G +D +R+LH D++ ++W + K RIDYFIVS+ +K++I +M
Sbjct: 203 KG-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMID 259
Query: 330 HGIELEGFYGSDHCPVSLEL 349
G DH P+ + +
Sbjct: 260 SGDR------QDHTPIYINI 273
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 141/316 (44%), Gaps = 65/316 (20%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
++ +KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 8 RRTNMKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE--------- 55
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
L P + Y W+ A+ K Y+GTA+ K+ +E+
Sbjct: 56 -----------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE 95
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 215
++ +GRVI E+ F+L+ Y PN + E R W+ + ++ KP
Sbjct: 96 ----HDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKP 149
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I CGDLNV+H+ ID+ + K + GFT ER++F +L G
Sbjct: 150 VILCGDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLSAG-F 193
Query: 276 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
D +R+ + D + +S WS + RIDYF+VS++L DR++ ++ +
Sbjct: 194 TDTFRYFY--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL-- 249
Query: 335 EGFYGSDHCPVSLELS 350
GSDHCPV L+L+
Sbjct: 250 ----GSDHCPVELQLN 261
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 145/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFETVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
R ++ F NY+ +W+ A+ K Y+G A+ K K +S + +
Sbjct: 39 ----------QREQATFDFPNYEEYWNSAEKKGYSGVAIFSK----TKPLSVAYDMGIAH 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE++ FYL+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDKEGRIICAEYKDFYLVNVYTPNS--KRELERLSYRMEWEDDFRAYLKNLEKTKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H ++ +SW + +GK R RIDYF+ S+ L +++ ++
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPE------V 237
Query: 338 YGSDHCPVSLELS 350
+GSDHCPV LE++
Sbjct: 238 FGSDHCPVGLEIN 250
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKNILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 143/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + S I + PDV+A+QE ++ A G K H
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAQMSRQVLETIQDYQPDVLAIQETKLSAKGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
A R E+ F +Y W A YAG + KK P+ V+
Sbjct: 57 -------AKRLEEW----------FPDYDYAWVSSVEPARKGYAGNMVFYKKDLSPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ FY Y PN G + R++WDK+ ++
Sbjct: 99 YPRIDAPEPMDSEGRMITLEFDNFYFTQVYTPNAG--SQLARLGERQEWDKQYANYLTSL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
+ KP+I GD NV+H+EID++HPE + GFT ER+ F +L
Sbjct: 157 DAAKPVIAAGDFNVAHQEIDLAHPE---------------NNHHSAGFTDEEREGFSHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R H D++ +SW + K RIDYF+ S+ L D++ EM
Sbjct: 202 SRG-FTDSFR--HVNGDVEGVYSWWAQRVKTSKENNSGWRIDYFLTSDRLSDQVEKSEMV 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DH P+ LE++
Sbjct: 259 DSGPR------QDHTPIYLEIN 274
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K + ++ N I + D LQE++M + G D
Sbjct: 1 MRFVSWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKM-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +++ A K Y+GTA+ K + P V + + +
Sbjct: 47 ------------------LEGYETYYNYAQRKGYSGTAIFTK--YTPLSVKYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I E+E F+L+ Y PN+ K+E R W+ + ++L+ + K +I C
Sbjct: 85 HDNEGRLITLEYEDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLELNKTKSVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKMSILLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + + WS + R RIDYF+ S+++ DR++ ++ + G
Sbjct: 187 RYFYPDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QRILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVYLEI 249
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + +N + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSNSARAIMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P+ +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPRSIS 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 100 YPEIGAPDNMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 157
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 158 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 202
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 203 AKG-FTDTFRYIH--GDVPGVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 259
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 260 DSGAR------QDHTPIVLEI 274
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 137/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAA- 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CG
Sbjct: 87 -DEGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 144 DLNVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
H D+ F+W + + K R + + RIDYFI+S+ L ++I + +
Sbjct: 188 HFH--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKIEEASIHSEIL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 239 GSDHCPIVLKL 249
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 65/316 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVNKG---FLDYFREMDADIFCVQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E Y+ +W+ A K Y+GTA+ KK +P V + +E+
Sbjct: 46 DLGEE----------------YEQYWNYALKKGYSGTAVFTKK--KPLSVRYGIEENE-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIW 218
EP+GR++ EFE+F+L+N Y PN+ + + S R + F LQ + KP+I
Sbjct: 86 -EPEGRILTLEFESFFLVNVYTPNS---KRDLSRLEERLEWEERFRFYLQKLDACKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ + +K + G GFT ER++ IL++ D
Sbjct: 142 CGDLNVAHQVIDLKN---------------SKSNHGNSGFTTEEREKM-TILQDAGFTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R + ++ D WS P + R RIDYF+VS L+D ++ + + +
Sbjct: 186 FRHFYPDQ-TDAYTWWSYMPKVRERNIGWRIDYFLVSSRLRDFLVDARIDSNIL------ 238
Query: 339 GSDHCPVSLELSEASS 354
GSDHCP+ L +++ +
Sbjct: 239 GSDHCPIHLIMNDCDT 254
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L VK F ++ D D+ +QE +
Sbjct: 1 MKLVSWNVNGLRACVKKG---FLDYFQEVDADIFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L S Y +W+ A K Y+GTA+ K +P V + + +
Sbjct: 38 ---------LQEGQISLDLDGYHQYWNYAIKKGYSGTAVFTK--IEPISVRYGVGTD--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
E +GR++ EF+ F+L+N Y PN+ + + R +W+ RI E + + KP+I C
Sbjct: 85 SEEEGRILTLEFDDFFLVNIYTPNS--QRDLARIGYRLEWESRILEHLKELDKLKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + +K + G GFT ER + ++L G +D+Y
Sbjct: 143 GDLNVAHQEIDLRN---------------SKSNVGNSGFTDEERGKMTSLLSAG-FVDSY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H D + ++W + + K R + + RIDYFIVSE+L++ + + ++ + +
Sbjct: 187 R--HFYPDQEGAYTW-WSYMMKVRERNIGWRIDYFIVSEKLRENLKSADIHCNVM----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCP+ LE+
Sbjct: 239 -GSDHCPIVLEV 249
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A K Y+GT + K+ +P V + L +
Sbjct: 45 -------------LNLPEYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+ EEID+ +P K + GFT ER++ IL G ID +
Sbjct: 143 GDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILNNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + RIDYFIVSE LKDRI ++ L G
Sbjct: 187 RYLYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ L+
Sbjct: 240 SDHCPIELDF 249
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMISWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P V ++ T +
Sbjct: 49 --------------------GYFQYWNYAEKKGYSGTAIFTK--IKPNNVILGIKNT--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ EF+ +YL+N Y PN+ + + R+KWD+ ++ KP+I+C
Sbjct: 85 HDGEGRVLTLEFDKYYLINVYTPNS--QRGLTRLEYRQKWDQDFLNYIKTLENEKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER F I+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KNNVKNAGFTPEERIGFDNIVDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS----EELKDRIIACEMQGHGIELE 335
R +KE D +S+ N K G RIDYF +S + LKD I E+
Sbjct: 187 REFNKEPDNYSWWSYRFNARSKNIG--WRIDYFCISKILRDNLKDAFIMSEVM------- 237
Query: 336 GFYGSDHCPVSL 347
GSDHCPV +
Sbjct: 238 ---GSDHCPVGI 246
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 64/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P+
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--KPLHVMYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSEQERGAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R R+DYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 240 GSDHCPVELMIN 251
>gi|409045646|gb|EKM55126.1| hypothetical protein PHACADRAFT_120160 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 150/322 (46%), Gaps = 64/322 (19%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
K D ++ TWN L K F ++ D DV+ L E ++ D+P
Sbjct: 76 KADSIRIATWNICGLAASSKKG---FKYYVEAEDADVLILTETKV-----NDSPA----- 122
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+ L+ R P + +WS++ K Y+GTA+L K +P V ++L
Sbjct: 123 ---------DPLLTKRY----PHR----YWSISAKKTYSGTAILCK--VKPLSVDYTLPG 163
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 215
GR++ EFE Y++ TY N G + +R W+K ++ K P
Sbjct: 164 HPDPEHVRGRILTLEFENVYVVGTYVVNAG--TGLKTLPEKRTWNKHFHAYIHSLDAKKP 221
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAIL---K 271
+IW GDLNV+ E+D+++P K +W + PG+T E F +L +
Sbjct: 222 VIWTGDLNVAPTELDLANP---------------KPNWNKTPGYTEDETSAFKRVLGPEE 266
Query: 272 EG--RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
EG ++ID +R LH + FS+ N + +G R+D+F+VSE L +++ CE++
Sbjct: 267 EGQKKMIDVWRHLHPKLRHYTYFSYRQN--CRSKGVGWRLDHFVVSERLLEKVDMCEIRS 324
Query: 330 HGIELEGFYGSDHCPVSLELSE 351
E + SDHCPV+LE+ +
Sbjct: 325 -----EIYGASDHCPVTLEIGK 341
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + VK F +F D D+ +QE +M QE + D
Sbjct: 1 MKFISWNVNGIRACVKKG---FLDFFNETDADIFCIQESKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A K Y+GT + K+ +P V + L +
Sbjct: 45 -------------LNLPGYHQY---WNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++ + KP+I+C
Sbjct: 85 HDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+ EEID+ +P K + GFT ER++ IL G ID +
Sbjct: 143 GDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRTILSNG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + RIDYFIVSE LKDRI ++ L G
Sbjct: 187 RYLYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ L+
Sbjct: 240 SDHCPIELDF 249
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D+ +QE ++ +
Sbjct: 1 MKLISWNVNGLRAAVKHG---FLDVFKELDADIFCIQETKLQEGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ KK +P V + L +
Sbjct: 45 -------------LELPHYYQY---WNYAEKKGYSGTAIFTKK--KPLAVRYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE FY++ Y PN+ + + + R WD + ++ Q + KP+I+C
Sbjct: 85 HDQEGRIITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + +K + GFT ER +F +L G D Y
Sbjct: 143 GDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + RIDYF+ S+ L ++ ++ +G
Sbjct: 187 RYFYPSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKALDQKLTDAQIHTE------IFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L+L
Sbjct: 240 SDHCPVELDL 249
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 141/324 (43%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S I +PD+IA+QE ++ A G + H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALLSRDVLQTILNLNPDIIAIQETKLSAKGPT---QKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ D FK+Y + W A YAGT L K +PK V+
Sbjct: 58 EILADL------------------FKDYMVVWRSSEEPARKGYAGTMFLYKHDLEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
F + + +GR+I EF+ FY+ Y PN G N+ +R R+ WD++ ++
Sbjct: 99 FPEIEAPSPMDAEGRMITLEFDDFYVTQVYTPNAG-----NALKRLADRQIWDQQYAAYL 153
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
K ++ GD NV+H EID++HPE + GFT ER F
Sbjct: 154 ASLDQDKIVLATGDFNVAHHEIDLAHPE---------------NNHHSAGFTDEERAGFT 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D +R LH D+ ++W + K RIDY++VS DR+I
Sbjct: 199 QLLAHG-FTDTFRHLH--GDVTGAYTWWAQRVKTSKINNSGWRIDYWLVSNRAVDRVIQS 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
E+ G DH P+ LE+
Sbjct: 256 EIIDSGTR------QDHTPILLEI 273
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N + ++ F +++ + +PD+I LQEV+ A +N +K D
Sbjct: 1 MKLISFNVNGIRSNIQKG---FLDYLISENPDIIGLQEVK--------AQENELPIKIDL 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+I+W+ A+ K Y+GTA+ K +P VS+ L +
Sbjct: 50 ASLW-----------------YEIYWNSANKKWYSGTAIFTK--IKPLSVSYWL--WLAE 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ + R+I EFE FY +N Y PN K E R+ WD +++ + KP+I C
Sbjct: 89 HDEEWRIITLEFENFYFVNVYTPNA--KRELERLDYRQLWDSLFLDYLKRLEQNKPVITC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
D NV+H+EID+++P+ K N GFT ER+ F + G ID +
Sbjct: 147 WDFNVAHQEIDLTNPK---TNKWNA------------GFTPEEREWFSKFISSG-FIDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K + + WS + R RIDYF++S LK+++ + ++ +
Sbjct: 191 RYFYPDKTWEYSW-WSNFANSRARNIGWRIDYFLISNTLKNKLKSAFIK------QEVRW 243
Query: 340 SDHCPVSLEL 349
SDHCPV +E+
Sbjct: 244 SDHCPVGIEI 253
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 148/316 (46%), Gaps = 75/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ +AG D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 -----------------ELKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K++ R W+ ++++ K ++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDKLLRLDYRMTWEDEFRKYLKNLEKKKAVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIE 333
R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+ IE
Sbjct: 187 RYFY--PNLEQVYSW-----WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE 238
Query: 334 LEGFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 -----GSDHCPVVLIL 249
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 72/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ FV+WN N L +K F +F D D+ A+QE ++ +N +L+
Sbjct: 1 MLFVSWNVNGLRACLKKG---FEDFFKDVDADIFAIQETKLQ--------RNQIDLE--- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +++ A K Y+G A+ KK +P V + + +
Sbjct: 47 ------------------FEGYTSYYNDAIKKGYSGVAIYTKK--EPMNVIYGM--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I EFE FY + Y PN+ K E R+ W+ ++ V + KP++ C
Sbjct: 85 HDQEGRLITLEFEKFYFVAVYTPNS--KRELERLDYRQVWEDAFRQHVQKLKESKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + +K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLKN---------------DKTNHKNAGFTDQERAKFSELLNSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELE 335
R+ + E +M +S+ K G RIDYF+VSE+LK+ I I E+
Sbjct: 187 RYKYPETEMYSWWSYMFKAREKNAG--WRIDYFVVSEDLKENIKDAYIYTEIM------- 237
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV +EL
Sbjct: 238 ---GSDHCPVGVEL 248
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 149/310 (48%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L +K + ++ N I + D LQE++M + G D
Sbjct: 1 MRFISWNVNGLRACIKKGFLDYFNEI---NADFFCLQEIKM-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y+ +++ A K Y+GTA+ K F+P V + + +
Sbjct: 47 ------------------LEGYETFYNYAQRKGYSGTAIFTK--FKPLSVKYGMGME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I E++ F+L+ Y PN+ K+E R W+ + ++L + K +I C
Sbjct: 85 HDNEGRLITLEYDDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLDLNKTKSVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMSILLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K+ + + WS + R RIDYF+ S+++ DR++ ++ + G
Sbjct: 187 RYFYPDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QSILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LE+
Sbjct: 240 SDHCPVYLEI 249
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 139/313 (44%), Gaps = 58/313 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K WN N L +K + +I +PD++ L E ++
Sbjct: 117 IKIACWNVNGLRAVLKR--EDLQKYIKQENPDILCLNETKID------------------ 156
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
E I + P YQ W + + K Y+G ++ K+ K +S
Sbjct: 157 ----ESNFIKEKVYKDIPSGYYQYWNFCIPPIKGYSGVSIFSKE----KVISIKKGIDIA 208
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++E +GRV+ AEF+ FYL+ Y PN G + + R +DK Q ++ Q K +I
Sbjct: 209 EHENEGRVLTAEFDKFYLVVVYVPNAGSELVRLDY-RVNSFDKDFQNYLNQLKLKKNVIL 267
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+++P K + PGFTI ER F L+ G ID
Sbjct: 268 CGDLNVAHQEIDIANP---------------KSNRNSPGFTIEERNSFSKFLESG-WIDT 311
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+RFL+ E +S WS + RIDYF+V++E K I + +
Sbjct: 312 FRFLYPET---IKYSWWSVRTKARESNIGWRIDYFVVNKEFKSSIKDSMINNN------I 362
Query: 338 YGSDHCPVSLELS 350
YGSDHCPV L+
Sbjct: 363 YGSDHCPVEFILN 375
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 139/311 (44%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +F N D D LQE +M A G D
Sbjct: 1 MKFISWNVNGLRAVVG---KDFENTFKALDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ + +P VS+ + +
Sbjct: 47 ------------------FDGYDSFWNYADKKGYSGTAIYTRH--KPLNVSYGIGID--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E TF+L+ Y PN+ +EE R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMPTFFLVTVYTPNS--QEELRRLDYRMQWEDDFQAYLHNLDKCKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLDAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E + +S WS + R RIDYF+VS L+ ++ ++
Sbjct: 187 RWKYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIH------TDIL 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 238 GSDHCPVELLL 248
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEDFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V++ L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--IAPLSVTYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER + A+L+ G D +
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R ++ +K +D WS + R RIDYF+VS L++ I + + G
Sbjct: 187 RHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNALREAIKEATIYPDVM------G 239
Query: 340 SDHCPVSLEL 349
SDHCP+ LE+
Sbjct: 240 SDHCPIGLEI 249
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ + F+ KP+I C
Sbjct: 85 HDKEGRIITCEFESFYLVNIYTPNS--QQALSRLNYRMSWEVEFRRFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNTG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNSLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 58 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 106
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTA 158
Y + S + G LL K+ +P KV+++ + K+
Sbjct: 107 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 143
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 144 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 201
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 202 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-FVD 246
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 247 VFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LCSV 299
Query: 338 YGSDHCPVSLEL 349
GSDHCP+SL +
Sbjct: 300 KGSDHCPLSLTI 311
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQE---------------------S 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K +E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 37 KIQQEQ--------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F+ F D D +QE ++ P+
Sbjct: 1 MKFISWNVNGLRACVKKG---FTEFFEQTDADFFCIQETKLQEGQIDFEPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ KK +P V + + +
Sbjct: 50 ---------------------YFCYWNYAVKKGYSGTAIFAKK--EPLSVQYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FY++ Y PN+ + E R +W+ + ++ Q KP+I C
Sbjct: 85 HDQEGRVITLEYENFYMVTVYTPNS--QSELARLSYRMQWEDDFRAYLQQLDEKKPVIMC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++F L G D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRHNAGFTDEEREKFTTFLDAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +K + WS + + RIDYF S+ L +++++ + +G
Sbjct: 187 RYFYPDKTEIYSW-WSYRFKAREKNAGWRIDYFCTSKRLDEKLLSASIH------TDIFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV +++
Sbjct: 240 SDHCPVEVQI 249
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 146/312 (46%), Gaps = 72/312 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F +F+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMDFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P +VS+ + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNEVSYGIGNN--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI +F+ +YLLN Y PN+ + + R+KWD+ +V K P+I+C
Sbjct: 85 HDGEGRVITLKFDEYYLLNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER F I+ G +D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELE 335
R +KE D +S+ N K G RIDYF +S+ LKD I E+
Sbjct: 187 REFNKEPDNYSWWSYRFNARAKNIG--WRIDYFCISKSLKGNLKDAFIMPEVM------- 237
Query: 336 GFYGSDHCPVSL 347
GSDHCPV +
Sbjct: 238 ---GSDHCPVGI 246
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K ++WN N L V F +F D +V +QE ++ + D P HQ
Sbjct: 3 KLISWNVNGLRACVGKG---FLDFFREADANVFCIQESKLQEGQIELDLPGYHQ------ 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 54 ------------------------YWNYARKKGYSGTAMFTKE--EPMSVSYGIGME--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++C
Sbjct: 86 HDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEKNKPVVFC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G +D +
Sbjct: 144 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 188 RYFY--PDLEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------ 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV L +
Sbjct: 240 GSDHCPVELVI 250
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSINADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N + VK F ++ D D A+QE + K EL+ D
Sbjct: 1 MKFVSWNVNGIRACVKKG---FLDYFHQVDADFFAIQETK--------CQKGQIELQLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ +W+ A+ K Y+GTA+ K P V + + + +
Sbjct: 49 --------------------GYEQYWNDAERKGYSGTAIFTKHT--PLSVQYGIGEDLI- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E+ FYL+ Y PN+ K + + R W++ ++ KP+I C
Sbjct: 86 -DQEGRVIALEYSKFYLVTCYTPNS--KRDLSRLPYRLSWEEHFLAYLKNLEEKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + K + G GFT ER + +L G D++
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNHGNSGFTQEERGKMTTLLSSG-FTDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E D WS + R RIDYFIVS EL + I E+ + G
Sbjct: 187 RYLYPET-TDKYSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVFLEL 249
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F TFD D LQE ++ A +
Sbjct: 1 MKFISWNVNGLRAIVKKN---FLEAFETFDADFFCLQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ +E+
Sbjct: 45 -------------LDLPGYTQY---WNYAEKKGYSGTAIFAKEPALAAHYGIGIEE---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+ F+L+ Y PN + E R W+ + ++ KP+I C
Sbjct: 85 HDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLSAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + + + + WS + RIDYF+VS++L DR++ ++ + G
Sbjct: 187 RYFYPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL------G 239
Query: 340 SDHCPVSLELS 350
SDHCPV L+L+
Sbjct: 240 SDHCPVELQLN 250
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 137/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V F ++ D D LQE + + +
Sbjct: 1 MKFISWNVNGIRACVNKG---FLDYFREMDADFFCLQETKCQVGQIDLQLEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
YQ W S Y+GTA+ K +P V + +E
Sbjct: 51 ---------------------YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAA- 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CG
Sbjct: 87 -DEGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 144 DLNVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
H D+ F+W + + K R + + RIDYFI+S+ L +++ + +
Sbjct: 188 HFH--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKVEEASIHSEIL------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 239 GSDHCPIVLKL 249
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ ++ +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCALKKGYSGVVTFSKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F+ Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFRGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L ++WN N + V+N F F+ ++PD++ALQE++ A D P
Sbjct: 5 LLLMSWNVNGIRAAVRNG---FLKFLEKYNPDILALQEIK---AREDDIP---------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L ++ Y+ +++ A K YAGTAL K +P+ VSF + +
Sbjct: 49 -------------LEVRYYEGYRKFFNPARRKGYAGTALFTK--IEPESVSFGIGDE--R 91
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE+E FYL+N Y PN+ + + ++D++I ++ + KP++ C
Sbjct: 92 FDSEGRVITAEYERFYLVNAYFPNS--QHGLTRLDFKIEFDRKIHAYLNELRRSKPVVLC 149
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+EID+++P K++ GFT ER L +G +D +
Sbjct: 150 GDFNVAHKEIDLANP---------------KQNEKNAGFTPEERAWMDEFLNDG-YVDTF 193
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R KE +++ N + R R+DYF+VS++L + + + YG
Sbjct: 194 RMFTKEGGHYTWWTYRFN--ARARNIGWRVDYFVVSKDLVPHVKKSWI------MSDVYG 245
Query: 340 SDHCPVSLEL 349
SDH P+++ L
Sbjct: 246 SDHAPIAMIL 255
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKLS------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E +L L K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 40 ----EGQLDL-------DLKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLAAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +S WS + RIDYF+VS L ++ E+
Sbjct: 187 R--HFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIHAQT------E 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVVLFL 249
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN L +K + + + +PD++ALQE + + P EL++
Sbjct: 51 IKIISWNVAGLRAWIK---KDGHSILVKENPDIVALQETKCV-----EVP---NELQNGY 99
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE---KTA 158
Y + S + G LL K+ +P KV+++ + K+
Sbjct: 100 ---------------------YSFLNTSEKSGHGGVLLLTKE--EPIKVTYTFDDKSKSG 136
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP++
Sbjct: 137 LDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKPIV 194
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+ GDLNV+H+EID+++P+ NK GFT ER F +L G +D
Sbjct: 195 YVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-FVD 239
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 240 VFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LCSV 292
Query: 338 YGSDHCPVSLEL 349
GSDHCP+SL +
Sbjct: 293 KGSDHCPLSLTI 304
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NAFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 60/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N R + +++ D + +QE ++ HQ+
Sbjct: 1 MKFISWNVNGF--RALQRKMDVFSWLKETGADALCIQETKL-----------HQD----- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ +P + +Q W Y+GTA+ K +P +V++ + +
Sbjct: 43 ----------QVQIDTPGY--HQFWNDAVRKGYSGTAIFTKN--KPLRVTYGMGIEV--H 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GR+I E+E +YL+ Y PN K + R +W +++ + KP+I+CG
Sbjct: 87 DQEGRLITLEYEDYYLVTVYTPNA--KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+ ID+++P K + G GFTI ER+ F A+L G +D++R
Sbjct: 145 DLNVAHQAIDLTYP---------------KNNKGNSGFTIEEREDFTALLNNG-FVDSFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ E+ D WS + R RIDYF++S+ L I ++ L YGS
Sbjct: 189 HLYPER-TDAYSWWSFLFNARERNIGWRIDYFVLSKCLSSSIRDAKL------LTEIYGS 241
Query: 341 DHCPVSLEL 349
DHCPV L+L
Sbjct: 242 DHCPVELDL 250
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLVSWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMGWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK+ +F + D D+ ++QE ++ D P HQ
Sbjct: 1 MKLISWNVNGLRAVVKH---DFKDTFEKLDADIFSIQETKLQEGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ AD K Y+GTA+ K+ +P + L+
Sbjct: 53 -------------------------YFNYADRKGYSGTAVFSKQ--EPLNIETGLDDDEF 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 219
+E GR I E+ FYL+N+Y PN+ K + F R D + KP+I C
Sbjct: 86 NHE--GRTITLEYPDFYLINSYTPNSQPKLKRLDF-RMGYNDAMWKHMQTLSKKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + +K + PGF+ ER +F +L G D +
Sbjct: 143 GDLNVAHNEIDIKN---------------DKTNHKNPGFSDEERNKFSELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+LH E + +S WS + RIDYF++S +D I ++ L Y
Sbjct: 187 RYLHPE---EVKYSWWSYRFNARKNNAGWRIDYFVISNNGQDLIQNADI------LNDVY 237
Query: 339 GSDHCPVSLELS 350
GSDHCP+ L+L+
Sbjct: 238 GSDHCPIQLDLN 249
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 141/312 (45%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++ QE + D
Sbjct: 1 MKLVSWNVNGIRACVKKG---FMDYFNDMDADIFCIQETKL------------QEGQID- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-EKTALK 160
L +P + YQ W Y+GTA+ K +P +V + L EK A +
Sbjct: 45 -------------LDTPGY--YQYWNYAIKKGYSGTAVFTK--MKPLQVRYGLDEKKAEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
EP+GR++ E+E F+L+N Y PN+ + + R W+ R ++ + K +I C
Sbjct: 88 CEPEGRILTLEYEDFFLVNVYTPNS--QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER + +L EG D +
Sbjct: 146 GDLNVAHAEIDLKNP---------------KSNRNNSGFTEEERGKMTRLLGEG-FSDTF 189
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + E D WS + R RIDYFIVS+ LK + E+ G
Sbjct: 190 RHFYPEL-TDKYTWWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIHSD------IMG 242
Query: 340 SDHCPVSLELSE 351
SDHCPV L L++
Sbjct: 243 SDHCPVVLILNK 254
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 66/308 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN + + +K N ++ D D+IALQE + +++ D+
Sbjct: 140 IKICTWNVSGIRAVLKKNG---MTYLEREDADIIALQETKCET----------KKIPDEV 186
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTA 158
K K Y ++ DSK Y G AL KK +P +S L++
Sbjct: 187 K-----------------LKGYTRYF--LDSKKAGYCGMALYSKK--EPIDISMGLDE-- 223
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GR+I AE+E FYL+N Y PN G K + +R KW++ ++ + KP+I
Sbjct: 224 -EFDDEGRLITAEYEHFYLVNVYVPNAGNKLV--TLPKRLKWNEAFKKHIQDLDKKKPVI 280
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGD+NV+H+EID+ +P K + GFT ER L+ G +D
Sbjct: 281 ICGDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLQAG-FVD 324
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +K D W+ + + R+DY+IVSE++K+++ C++ + +
Sbjct: 325 TFRLLYPDK-TDAYTFWAYFNNARSKNIGWRLDYYIVSEKIKNKV--CDV----VNRDQV 377
Query: 338 YGSDHCPV 345
+GSDHCPV
Sbjct: 378 FGSDHCPV 385
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK F ++ + D D+ LQE ++ QE + D
Sbjct: 1 MKLISWNVNGLRACVKKG---FLDYFKSEDADIFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ Y +W+ A+ K Y+GTA+ KK +P V + +
Sbjct: 46 -----------------DLEGYFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 219
++ +GRVI EFE +++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDLFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 141/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P VS+ + +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKK--EPLSVSYGIGQE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P K + GFT ER +F +LK G ID
Sbjct: 141 LCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FID 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R + +K + WS + RIDYF VSE LK+ + + +
Sbjct: 185 TFRHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQI 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 238 MGSDHCPVGLEI 249
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 137/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F+ F T D D+ +QE ++ AP+
Sbjct: 1 MKLISWNVNGLRACMQKG---FAEFFTASDADIFCIQESKLQEGQIDFAPEG-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K Y+GTA+ +K +P V + + +
Sbjct: 50 ---------------------YYAYWNYAQKKGYSGTAIFTRK--EPLSVHYGIGIP--Q 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF FY++ Y PN+ + E R +W+ ++ KPLI C
Sbjct: 85 HDTEGRVITLEFPDFYMVTCYTPNS--QNELARLSYRMEWEDAFLSYLKGLDRNKPLILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER + A+L G D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERTKMTALLSAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D + +S WS + + RIDYFI S L DR++ + L
Sbjct: 187 R--HFYPDTEGIYSWWSYRFHAREKNAGWRIDYFITSSALDDRLVDAGI------LTDVT 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV+L +
Sbjct: 239 GSDHCPVTLTV 249
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +
Sbjct: 46 E-----------------FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I C
Sbjct: 85 HDKEGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER++FG +L G D +
Sbjct: 143 GDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
RF + +++ + WS + + RIDYF+VS+ L+ +++ I E F G
Sbjct: 187 RFFYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-G 239
Query: 340 SDHCPVSLEL 349
SDHCPV ++L
Sbjct: 240 SDHCPVEVDL 249
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNTG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F ++ T +PD+I LQEV+
Sbjct: 13 MKAVSWNVNGVRSVLTKG---FLEYLATENPDIIGLQEVK-------------------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ EE+ L S Y I+W+ A+ K Y+GTA+ K +P V + L +
Sbjct: 50 --ATEEQFPAGFDLQS---MGYHIYWNAAERKGYSGTAVFSK--VEPISVRYGLGMK--E 100
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I C
Sbjct: 101 HDQEGRIITLEFEKYFFVTVYTPNA--KSELERLEYRQLWDSLFFDYLKRLEVEKPVIVC 158
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+++P+ PN+ W GFT ER FG L G ID +
Sbjct: 159 GDLNVAHQEIDLTNPK------------PNR--W-NAGFTDEERAGFGHYLANG-FIDTF 202
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +K + + WS + R RIDYF++SE L + + ++ + G
Sbjct: 203 RHFYPDKTGEYTW-WSNFFKSRDRNIGWRIDYFLISERLVTNLKSAFIR------QEIRG 255
Query: 340 SDHCPVSLEL 349
SDHCPV +++
Sbjct: 256 SDHCPVGIKI 265
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKMQ------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 40 -----------QDQNTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 61/311 (19%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K VTWN N L + F + D D+I++QE
Sbjct: 5 RNLMKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE------------------- 42
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA 158
TK RE+ + P + Y+ W S Y+GTA+ + +P V++ L
Sbjct: 43 --TKMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGL--GI 89
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I
Sbjct: 90 EEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTI 147
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGD+NV+HE ID+ +P+ + GF+ ER++ A L G +D
Sbjct: 148 VCGDMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG-FVD 191
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
++R L+ +++ + WS + R RIDYF+VSE +D+I + +
Sbjct: 192 SFRMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------MNEI 244
Query: 338 YGSDHCPVSLE 348
GSDHCPV LE
Sbjct: 245 MGSDHCPVVLE 255
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 144/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L+ M F +Y W A YAGT L K P+ V+
Sbjct: 58 EI-----------LVEM-------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
K G D +R +H +++ +SW + K RIDY+IVS + +++ EM
Sbjct: 202 KLG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQVTKSEML 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 259 DTGER------KDHCPIMLEIN 274
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 152/319 (47%), Gaps = 71/319 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 419
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 420 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLL 464
Query: 272 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
+ +D +R K+ G++ W G+ K R+DYF+VS+ IA +
Sbjct: 465 DKGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDS 516
Query: 331 GIELEGFYGSDHCPVSLEL 349
I L GSDHCP+ L L
Sbjct: 517 YI-LPDINGSDHCPIGLIL 534
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N L K F ++ + D+ LQE ++
Sbjct: 1 MKLVSWNVNGLRAIQKKG---FDEYLKQSNADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E+++ L+ + Y +WS A+ K Y+GTAL K+ +P V +
Sbjct: 39 ---QEDQISLVT-------EGYHTYWSFAEKKGYSGTALFSKQ--EPVSVQRGI---GHP 83
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 219
+ +GR + AEFE FY++ Y PN+ +E R WD+ + +V S KP+I C
Sbjct: 84 LDNEGRTVTAEFEQFYVVCCYTPNS--QEALARLDTRMDWDEAFRSYVCSLASMKPVIIC 141
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ HP K + G++I ER +F ++L G ID +
Sbjct: 142 GDLNVAHQSIDLRHP---------------KANERNAGYSIEERNQFTSLLDAG-FIDTF 185
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ ++ + WS + RIDY++VSEEL+ I+ + G
Sbjct: 186 RYLYPNREGIYSW-WSYRFKARENNAGWRIDYWLVSEELRQSILDSTIDTET------QG 238
Query: 340 SDHCPVSLELS 350
SDH PV L L+
Sbjct: 239 SDHAPVILYLN 249
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 64/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKN---FMEDFRKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Q W Y+GTA+ K+ +P VS+ + +++
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPLSVSYGI--GVEEHD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGD
Sbjct: 88 QEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLNYILNLEKKKPVVYCGD 145
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+HEEID+ +P+ + GF+ ER +F +L G L D++R+
Sbjct: 146 LNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDNGYL-DSFRY 189
Query: 282 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ EK+ +S WS + R RIDYF+VS++L+ ++ + + + GS
Sbjct: 190 FYPEKE---EYSWWSYRTKARERNVGWRIDYFVVSKQLEKKLHSASIHTEVM------GS 240
Query: 341 DHCPVSLEL 349
DHCPV L L
Sbjct: 241 DHCPVELIL 249
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 71/316 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFNQLDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+++ A+ K Y+GTA+ K +P ++ + +
Sbjct: 53 ----------------------------YFNYAEKKGYSGTAIFTKH--KPLTATYGIGQ 82
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
+++ +GRVI E+ TFYL+ Y PN+ +++ R +W+ Q ++ S KP
Sbjct: 83 P--EHDQEGRVITLEYPTFYLITCYTPNS--QDKLKRLDYRMRWENAFQTYIADLSTQKP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I+CGDLNV+HE ID+ + +K + GF+ ER + +L G
Sbjct: 139 VIFCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERGQMTTLLNRG-F 182
Query: 276 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R+ + ++ D WS + RIDYFI S +L+ +++ ++
Sbjct: 183 TDTFRYFYPDQP-DIYSWWSYRFHARDNNAGWRIDYFITSNDLQPKLVDAKIHTE----- 236
Query: 336 GFYGSDHCPVSLELSE 351
+GSDHCPV L+ +
Sbjct: 237 -IFGSDHCPVELDTQD 251
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y W A YAGT L K P+ V+
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIAAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
K G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 202 KLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEML 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 259 DTGER------KDHCPIMLEIN 274
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 152/319 (47%), Gaps = 71/319 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 317
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 318 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 354
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 355 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 410
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 411 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLL 455
Query: 272 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
+ +D +R K+ G++ W G+ K R+DYF+VS+ IA +
Sbjct: 456 DKGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDS 507
Query: 331 GIELEGFYGSDHCPVSLEL 349
I L GSDHCP+ L L
Sbjct: 508 YI-LPDINGSDHCPIGLIL 525
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 143/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L VK F + + D D+ +QE ++ QE + D
Sbjct: 2 IQLVSWNVNGLRACVKKG---FLDVMEQLDADIFCIQETKL------------QEGQID- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K +P V +
Sbjct: 46 -------------LELPDYYQY---WNYAEKKGYSGTAVFTK--IKPLSVKNGIGVDEFD 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+E GRVI EF+ ++L+ Y PN+ + E R W++ +E++L+ KP+I C
Sbjct: 88 HE--GRVITLEFDDYFLVTCYTPNS--QSELARLSYRMDWEENFREYLLKLEEDKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER++F +L+ G ID +
Sbjct: 144 GDLNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFTKLLEAG-FIDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D+ +S WS + + RIDYF VSE L++R+ + Y
Sbjct: 188 R--HFYPDVTEAYSWWSYRFRAREKNAGWRIDYFCVSEGLEERL------AEAVIHTDIY 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 240 GSDHCPVGLYL 250
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNF---ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ L E + I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSTRAGETRDVLHKIADLVPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ ++ L F +YQ+ W A YAGT L + PK +S
Sbjct: 54 ----------KKHFTVLNEL----FPDYQVAWRSSVEPARKGYAGTMYLYRTGLTPK-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF F++ Y PN+G R+ WD R +E++ Q
Sbjct: 99 YPQIGAPEPMDNEGRMITLEFPYFFVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HE ID++HPE + GFT ER+ F +L
Sbjct: 157 DQQKPVIASGDFNVAHEPIDLAHPE---------------NNHHSAGFTDEEREHFTKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
K G D++R LH E+ +SW + K RIDY++VS+ + D+++ M
Sbjct: 202 KAG-FTDSFRHLHPEE--KGAYSWWAQRVITSKQNNSGWRIDYWLVSDRIADKVVKSSMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DTGAR------RDHTPIELDI 273
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ F Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 61/308 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K VTWN N L + F + D D+I++QE T
Sbjct: 1 MKLVTWNVNGLRACMNKG---FKESMEKLDADIISIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K RE+ + P + Y+ W S Y+GTA+ + +P V++ L ++
Sbjct: 37 KMQREQA-----SFDFPGY--YEYWNSAVKKGYSGTAIFSR--IKPLSVTYGL--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K I CG
Sbjct: 86 DQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKKTTIVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+HE ID+ +P+ + GF+ ER++ A L G +D++R
Sbjct: 144 DMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG-FVDSFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ +++ + WS + R RIDYF+VSE +D+I + + GS
Sbjct: 188 MLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------MNEIMGS 240
Query: 341 DHCPVSLE 348
DHCPV LE
Sbjct: 241 DHCPVVLE 248
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 148/314 (47%), Gaps = 56/314 (17%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ +K ++WN N L +K + DV+ LQE ++ A SKD Q L D
Sbjct: 165 NSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQA--SKDVDSIKQCLID 222
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 157
+ S +W+ +++K Y+GTA++ + +P V + L
Sbjct: 223 GYENS---------------------FWTCSNAKLGYSGTAIVSR--IKPLSVCYGL--G 257
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 216
++ +GRV+ AEF++FYL+NTY PN+G + S+ R +WD + ++ + KP+
Sbjct: 258 IPDHDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPV 316
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I GDLN +H+EID+ +P NK GFT ER+ FG+ L+
Sbjct: 317 ILTGDLNCAHQEIDIFNP------------AGNKR---SAGFTEEERQSFGSNFLSKGLV 361
Query: 277 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R H G++ W G+ K R+DYF+VSE + D++ + +
Sbjct: 362 DTFRKQHPNV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESIADKVHDSYI------VP 412
Query: 336 GFYGSDHCPVSLEL 349
GSDHCP+ L L
Sbjct: 413 DVNGSDHCPIGLVL 426
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 32/232 (13%)
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
K Y +W YAG A+ KK P V++ L + + DGR++ AE+E F+L+
Sbjct: 409 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVTYGLGDE--EQDADGRLLTAEYEKFFLVC 464
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 238
Y PN G + +R +WD++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 465 VYVPNAG--RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKT-- 520
Query: 239 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGN 297
NK++ GFT ER+ +L G +D +R L+ E+ F ++ GN
Sbjct: 521 ----------NKKNA---GFTPEEREGMTKLLSLG-FVDTFRQLYPEQSGAYTFWTYMGN 566
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
K G R+DYFI SE +++ + G YGSDHCP++L L
Sbjct: 567 ARAKNVG--WRLDYFITSERFVGKVV------DNVIRSGVYGSDHCPLTLFL 610
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK R+ + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + F D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACCEKG---FKESFAALDADFFCLQETKM------------QEGQLDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +
Sbjct: 46 E-----------------FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I C
Sbjct: 85 HDREGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER++FG +L G D +
Sbjct: 143 GDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
RF + +++ + WS + + RIDYF+VS+ L+ +++ I E F G
Sbjct: 187 RFFYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-G 239
Query: 340 SDHCPVSLEL 349
SDHCPV ++L
Sbjct: 240 SDHCPVEVDL 249
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTHL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 146/307 (47%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCVQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LDGYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + K +I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRHYLNELNKDKSVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER++FG +LK G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + K+ + WS + RIDYF+VS++ +DR++ + IE GS
Sbjct: 189 YFYPGKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GS 241
Query: 341 DHCPVSL 347
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F F T D D+ +QE +M H +
Sbjct: 1 MKLISWNVNGLRACLSKG---FEGFFNTADADIFCIQETKM-----------HPD----- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E LI Y+ +W+ A K Y+GTA+ + P V + L +
Sbjct: 42 --QAEIGLI-----------GYEKYWNSAVKKGYSGTAVFTR--ITPLSVIYGLNIE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I EFE F+L+N Y PN+ K E R +W+ + +++ + KP+I C
Sbjct: 85 HDQEGRLITLEFENFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLITLNQSKPVIIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GFT ER + A+L+ G D +
Sbjct: 143 GDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R ++ +K +D WS + R RIDYF+VS L++ I + G
Sbjct: 187 RHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLREAIKEATIY------PDVMG 239
Query: 340 SDHCPVSLEL 349
SDHCP+ LE+
Sbjct: 240 SDHCPIGLEI 249
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K + F D D +QE ++ + P+ E
Sbjct: 1 MKFISWNVNGLRACMKKD---FDKTFRELDADFFCIQESKLQEGQIEYCPEGWNE----- 52
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+W+ A+ K Y+GTA+ KK +V++ + + +
Sbjct: 53 ------------------------YWNYAEKKGYSGTAIWAKK--PALQVTYGIGEE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++TF+L+ Y PN+ ++ R W+ + ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYDTFFLVTVYTPNS--QDGLKRLDYRMTWEDSFRAYLGKLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + GFT ER +F +L G D++
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+LH E D +S WS + + RIDYF+ SE +K++I + + +
Sbjct: 187 RYLHPE---DVEYSWWSYRFHAREKNAGWRIDYFLTSERVKEKIEQAVIH------QEIF 237
Query: 339 GSDHCPVSLELS 350
GSDHCPV L++S
Sbjct: 238 GSDHCPVELDIS 249
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 77/319 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L +K +F+TTF D D LQE +M A + D P HQ
Sbjct: 1 MKFISWNVNGLRAVLK------KDFMTTFEQFDADFFCLQETKMQAGQVELDLPGYHQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+++ A+ K Y+G A+ K +P V++ +++
Sbjct: 53 ----------------------------YFNYAEKKGYSGAAIFTKH--EPLNVTYGIQQ 82
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-S 212
+++ +GRVI E+ F+L+ Y PN+ +N +R R W+ + +V Q +
Sbjct: 83 P--EHDHEGRVITLEYPQFFLITCYTPNS-----QNQLKRLDYRMTWENAFRAYVQQLGT 135
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP+I+CGDLNV+HE ID+ + ++ + GF+ ER + +L+
Sbjct: 136 QKPVIFCGDLNVAHEAIDLKN---------------DRTNHKSAGFSDEERVQMTTLLQS 180
Query: 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
G D +R+ + ++ D WS + RIDYFI S+EL+ +++ ++
Sbjct: 181 G-FTDTFRYFYPDQ-TDIYSWWSYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTE-- 236
Query: 333 ELEGFYGSDHCPVSLELSE 351
YGSDHCPV L+ +
Sbjct: 237 ----IYGSDHCPVELDTQD 251
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ + G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRSTGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y W A YAGT L K P+ V+
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLAPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQNKPVIASGDYNVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
K G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 202 KLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEML 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 259 DTGER------KDHCPIMLEIN 274
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 60/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK +++ PDV+ LQE + KD P
Sbjct: 56 MKITSWNVDGLRAWVKKG---GLDWVREEAPDVLCLQETK---CAEKDLPAE-------- 101
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
+ ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 102 ----------ITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGKE-- 143
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KPL+
Sbjct: 144 EHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKPLVL 201
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D+
Sbjct: 202 CGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-FVDS 245
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 246 FRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM------ 298
Query: 339 GSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 299 GSDHCPITLHLA 310
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 65/314 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N + K ++ F +F PDV+ LQE T
Sbjct: 1 MRLVSWNVNGIRAVTKKDF--FESF-ERMAPDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ L + L Y+++ + A+ K Y+GTA++ + +P +S + + +
Sbjct: 37 KAQDDQVLEALTELDPA----YKVFSNSAEKKGYSGTAIITR--VEP--ISVTADMGMPE 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ AEFETFYL+ Y PN+G E R+ WDK +++ KP++ C
Sbjct: 89 HDTEGRVLCAEFETFYLVTVYTPNSG--SELKRLDYRQSWDKDFADYLKTLEQTKPVVVC 146
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDA 278
GDLNV+H++ID++ P K+++ + G+ AE F ++ G +D
Sbjct: 147 GDLNVAHQDIDLARP---------------KQNYNKSAGYMQAEIDGFDRLVDLG-FVDT 190
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
YR + +SW G R K + RIDYF+V+ EL + E+
Sbjct: 191 YRHFNPNT---AKYSWWSYRAGA-REKNIGWRIDYFLVTPELTSSLTGAEI------YND 240
Query: 337 FYGSDHCPVSLELS 350
YGSDHCPV +++S
Sbjct: 241 VYGSDHCPVGIDIS 254
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 146/348 (41%), Gaps = 105/348 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L K F + + D D++ALQE ++ +
Sbjct: 1 MRFISWNVNGLRAVQKKG---FEDIVCELDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y WS A+ K Y+GTA+ K+ QP +V L L
Sbjct: 44 ------------TLDLPQYREY---WSYAEKKGYSGTAVFTKE--QPLQVLHGLGSDYLD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 AE--GRIVALEFPQFWFVDVYTPNA--QNELARIAHRMEWDDAFRDF---CKGLEEGVLP 139
Query: 214 -------------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 242
KP++ CGD NV+H+EID+ +P
Sbjct: 140 ADVPVQRPAPGEGHVCISELPLTQPGETAAPKPVVMCGDFNVAHQEIDLKNPG------- 192
Query: 243 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 301
PN+ G+ GF+ ER +F +L+ G +D +R LH D+ +S WS +
Sbjct: 193 -----PNR---GKAGFSDEERGKFTDLLEAG-FVDTFRRLH--PDVTGAYSWWSYRFKAR 241
Query: 302 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RIDYF+VSE L ++ + + + YGSDHCPV LEL
Sbjct: 242 QNNAGWRIDYFLVSESLAPKVASACI------YDEVYGSDHCPVGLEL 283
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P V
Sbjct: 57 Q------------------TILAEQFPDYEITWRSSQEPARKGYAGTMFLYKNNLNPT-V 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
L +G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 201 LNKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
L+ DH P+ LE++
Sbjct: 258 ------LDSGERRDHTPIVLEIN 274
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 66/323 (20%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSK 88
E +SE ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ P
Sbjct: 3 ELTSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQI 59
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQP 147
D P +Q +W+ A K YAGTA+ K+
Sbjct: 60 DLPGYYQ------------------------------YWNYAKRKGYAGTAVFTKE---- 85
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
K ++ + + + +GR I EF FY ++ P +G K + F R W + + +
Sbjct: 86 KPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNY 143
Query: 208 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
V + KP+I GD++V+H++ID++ P+ ++ GFT ERK F
Sbjct: 144 VTKLMQYKPVIIGGDMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEF 188
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G ID +R+ H ++ +S+ + K G R+DYF+VS L+D++I +
Sbjct: 189 SELLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQ 245
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
+ L GSDHCP+ L+L
Sbjct: 246 I------LNNIMGSDHCPIELDL 262
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 141/313 (45%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + +K W + D D +QE + A + D P
Sbjct: 1 MKFVSWNVNGIRACLKKGWL---TYFQEVDADFFCIQETKCQAGQVEIDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 49 ---------------------GYEQYWNYALKKGYSGTAIFTKHT--PLSVKYGVGDH-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+ E +GR+I E+E FY++ Y PN+ K + + R W+ ++ ++ Q KP+I+
Sbjct: 84 ETEDEGRIITLEYENFYVVTVYTPNS--KRDLARLEERLVWEDDLRVYLQQLDAQKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + K + G GFT ER + +L G D+
Sbjct: 142 CGDLNVAHEEIDLKNA---------------KSNVGNSGFTDGERSKMTLLLNSG-FTDS 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R HK F+W + + K R + + RIDYFIVS+ L +I E+ +
Sbjct: 186 FR--HKYPTESNRFTW-WSYMNKVRERNIGWRIDYFIVSDRLVPQIETAEIHDQQL---- 238
Query: 337 FYGSDHCPVSLEL 349
GSDHCP++L L
Sbjct: 239 --GSDHCPIALTL 249
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK F ++ D D+ +QE ++
Sbjct: 1 MKLVSWNVNGIRACVKKG---FLDYFNEVDADIFCIQESKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L + Y+ +W+ A K Y+GTA+ K+ +P V + + + +
Sbjct: 39 ---QEGQIEL-------DLEGYEQYWNYAVKKGYSGTAVFTKE--KPISVKYGVGEEEDE 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+GRV+ EF+ FYL+N Y PN+ K R W+ + + + KP+I C
Sbjct: 87 --EEGRVLTLEFDQFYLVNVYTPNS--KRGLERLDGRMIWEDEFRAHLKELDAIKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ NK+ GFT ER++ +L G ID++
Sbjct: 143 GDLNVAHEEIDLKNPK------------SNKK---SAGFTNEEREKMTELLTSG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R+ + D++ +SW + +GK R + RIDYF+VSE LK+++ +
Sbjct: 187 RYFY--PDLEGAYSW-WSYMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQ------I 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 238 MGSDHCPVVLEL 249
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 143/323 (44%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P +
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF++FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDSFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
L +G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 201 LNKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
L+ DH P+ LE++
Sbjct: 258 ------LDSGERRDHTPIVLEIN 274
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
S F+ Y +W+ A+ K Y+G +L K +P +V++ + +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVTYDMGIS--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H ++ +SW + +GK R RIDYF+ S L+ + ++ H
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------I 237
Query: 338 YGSDHCPVSLEL 349
+GSDHCPV L +
Sbjct: 238 FGSDHCPVGLSM 249
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 63/307 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + + + D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVKKG---FLDILKESNADIFCIQESKL------------QEGQIDLN 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ K ++ SL ++
Sbjct: 48 -----------------LEEYYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ EFE FYL+N Y PN+ +++ R W+ ++++ + + K +I CG
Sbjct: 87 DKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRDYLNELNKDKSVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER++F +LK G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFDELLKSG-FIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +K+ + WS + RIDYF+VS++ +DR++ + IE GS
Sbjct: 189 YFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GS 241
Query: 341 DHCPVSL 347
DHCPV L
Sbjct: 242 DHCPVEL 248
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D+ +QE +M KD
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFNEVNADIFCIQESKMQ--------------KDQG 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
S F+ Y +W+ A+ K Y+G +L K +P +V++ + +
Sbjct: 44 DFS---------------FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVAYDMGIS--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H ++ +SW + +GK R RIDYF+ S L+ + ++ H
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------I 237
Query: 338 YGSDHCPVSLEL 349
+GSDHCPV L +
Sbjct: 238 FGSDHCPVGLSM 249
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L + N F + D D LQE ++ A + EL D
Sbjct: 1 MKFISWNVNGLRAVMGKN---FMEAFGSLDADFFCLQETKLQAG------QIQMELPD-- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P S+ + +
Sbjct: 50 ---------------------YHQFWNYAEKKGYSGTAVFTKH--EPISASYGI--GIAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E F+L+ Y PN+ ++E + R KW+ + ++ + K +I C
Sbjct: 85 HDTEGRVITLEYEKFFLVTVYTPNS--QDELRRLEYRMKWEDDFRAYLKTLALKKGVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GFT ER + +L G D++
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRRNAGFTDEERGKMTELLSSG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D +S WS + + RIDYF+VS+ +KD+ M G I E
Sbjct: 187 R--HFYPDTAGVYSWWSYRFHAREKNTGWRIDYFLVSDSIKDK-----MTGAKIHTE-IL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDM 249
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 62/313 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK N +++ PDV+ LQE T
Sbjct: 55 MKITSWNVDGLRAWVKKN---GLDWVREEAPDVLCLQE---------------------T 90
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
K S EK + S P + + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 91 KCS--EKALPAEITSMPEYPHK--YWAASDEKQGYSGVAMLCKT--EPLKVTYGIGKE-- 142
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI AEF FYL+ TY PN+ + R+ WD+ + ++ + KPL+
Sbjct: 143 EHDKEGRVITAEFPNFYLVTTYVPNS--SKGLVRLDYRKTWDEDFRAYLSELDMQKPLVL 200
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P+ NK++ GFT+ ER+ FG +L G D+
Sbjct: 201 CGDLNVAHQEIDLKNPK------------GNKKN---AGFTVEEREGFGQLLGSG-FADS 244
Query: 279 YRFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ E+ F ++ N GK G R+DYF++S L + +++ +
Sbjct: 245 FRELYPEQANAYTFWTYMMNSRGKNVG--WRLDYFLLSSSLLPGLCDSKIRSKAL----- 297
Query: 338 YGSDHCPVSLELS 350
GSDHCP++L ++
Sbjct: 298 -GSDHCPITLHIA 309
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 64/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N+ E +F D D+ LQE ++ A +
Sbjct: 3 KLISWNVNGLRAVMGKNFME--DF-RKLDADIFCLQETKLQAGQIE-------------- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Q W Y+GTA+ K+ +P VS+ + +++
Sbjct: 46 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPISVSYGI--GVEEHD 87
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI AEF+ FYL+ Y PN+ + E R +++ ++L K P+++CGD
Sbjct: 88 QEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLSYILNLEKKKPVVYCGD 145
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+HEEID+ +P+ + GF+ ER +F +L G L D++R+
Sbjct: 146 LNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDSGYL-DSFRY 189
Query: 282 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ EK+ +S WS + R RIDYF+VS++L+ ++ + + + GS
Sbjct: 190 FYPEKE---EYSWWSYRTKARERNVGWRIDYFVVSKKLEKKLHSASIHTEIM------GS 240
Query: 341 DHCPVSLEL 349
DHCPV L L
Sbjct: 241 DHCPVELIL 249
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 154/330 (46%), Gaps = 63/330 (19%)
Query: 28 TTETSSEENSKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVR 81
+T S S+K+ +K ++WN N L ++ KN E + + D DV+ LQE +
Sbjct: 24 STMRPSSPPSEKNLVKVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLCLQETK 83
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTAL 139
+ KD Q++ S +W+ + SK Y+G AL
Sbjct: 84 LQ---EKDVEAIKQKILGGYSNS---------------------FWTCSSSKLGYSGCAL 119
Query: 140 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199
+ + +P V++ L + +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +
Sbjct: 120 ISR--IKPVSVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTE 174
Query: 200 WDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 258
WD ++L+ KP+I GDLN +HEEID+ P+ NK GF
Sbjct: 175 WDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGF 219
Query: 259 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEE 317
T ER F + L+D +R K+ + GF+ WS + + K R+DYF+VS+
Sbjct: 220 TCEERTSFQTNFIDKGLVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQG 276
Query: 318 LKDRIIACEMQGHGIELEGFYGSDHCPVSL 347
L + L GSDHCP+ L
Sbjct: 277 LVSNV------ADSYVLPQLDGSDHCPIGL 300
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N + + F + + DV LQE + + + P HQ
Sbjct: 1 MKLISWNVNGIRACITKG---FEDRFKELNADVFCLQETKCQQGQVELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ + Y+GTA+ KK +P V + A
Sbjct: 53 -------------------------YWNYANRRGYSGTAVFTKK--EPLSVVNGIGIEA- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRVI EFE FY + Y PN+ + E + R +W++ ++L+ KP+I
Sbjct: 85 -HDKEGRVITLEFEEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQEKKPVIC 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD+NV+H+EID+ +P K + GFT ER F +L+ G +D
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFSRMLESG-FVDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K+ + WS + + RIDYFIVS LKDR +Q I E
Sbjct: 186 FRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFIVSPSLKDR-----LQDASIHTE-IM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + ++ N I DPD+IA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSARAKLTRGVLNTIKEKDPDIIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y W A YAGT L K P+ V+
Sbjct: 58 EILAEM------------------FPDYDYVWRSSEEPARKGYAGTMFLYKNTLTPE-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ +
Sbjct: 99 KPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HPE + GFT ER+ F +L
Sbjct: 157 DQVKPVIASGDYNVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
K G D +R +H +++ +SW + K RIDY+IVS + ++I EM
Sbjct: 202 KLG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQITKSEML 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DHCP+ LE++
Sbjct: 259 DTGER------KDHCPIMLEIN 274
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 141/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D+ LQE ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FMDFFQQEQADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K+ +P VS+ + +
Sbjct: 39 ---QEEQI---------PFQLEGYHAYWNFAQKKGYSGTAVFAKQ--EPLSVSYGIGQE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 217
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 -EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P K + GFT ER +F +LK G ID
Sbjct: 141 LCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FID 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R + +K + WS + RIDYF VSE LK+ + + +
Sbjct: 185 TFRHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQI 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 238 MGSDHCPVGLEI 249
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 141/312 (45%), Gaps = 66/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I DVI LQE +K P + Q +
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADVICLQE-------TKCQPGDVQHVVWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+ WW+ A K Y+GTA+ + +P VS L
Sbjct: 51 --------------------GYRAWWNAAQKKGYSGTAIFSR--VEPVAVSCGLGLP--D 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRV+ AEF FYL+N Y PN + E RR+W+ ++ K P++ C
Sbjct: 87 HDNEGRVLTAEFADFYLVNVYVPNA--QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID++ P KE+ G GF+ ER+ F +L+ G +D +
Sbjct: 145 GDMNVAHQEIDLARP---------------KENVGNAGFSNEEREDFSTMLRAG-FVDTF 188
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R K +SW G RG+ + RIDYF+ S L+ R+ ++
Sbjct: 189 REFEKGPGH---YSWWTYRAGA-RGRNIGWRIDYFLASAALRPRLKRAWIE------PTV 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 MGSDHCPVGLEL 250
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 65/337 (19%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T+ + N+K +WN + L VK + +++ +PDV+
Sbjct: 45 PILYEDPPDKMTSRDGRDANTK-----ITSWNVDGLRAWVKK---KGLDWVREENPDVLC 96
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ P+K +W+ +D K Y
Sbjct: 97 LQETK---CAEKSLPAD------------------ITSMPEYPYK----YWAGSDDKEGY 131
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G A+L K +P KV++ + K +++ +GRVI AEF F+L+ Y PN+G
Sbjct: 132 SGVAMLCKT--EPVKVTYGIGKE--EHDKEGRVITAEFPGFFLVTAYVPNSG--RGLVRL 185
Query: 195 QRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 186 DYRKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN- 232
Query: 254 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 313
GFT ER+ FG +L+ G +D++R L+ E+ F W+ + + R+DYF+
Sbjct: 233 --AGFTAEEREGFGQLLEAG-FVDSFRELYPEQSHAYSF-WTYMMNARDKNVGWRLDYFV 288
Query: 314 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+S L + +++ GSDHCP++L ++
Sbjct: 289 LSSSLLPGLCDSKIRNQ------VKGSDHCPITLHMA 319
>gi|395244636|ref|ZP_10421596.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483087|emb|CCI82604.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 139/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL L N E + DPDVIA+QE ++ A G K HQ
Sbjct: 1 MRLISWNIDSLNAALTSDSNRAQETRQVLAAIKEKDPDVIAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E KL F Y W A YAGT L K + PK V+
Sbjct: 58 E-----------KLAEF-------FPEYSYVWRSSQEPARKGYAGTMFLYKNTYDPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ Y+ Y PN+G E R+ WD++ + ++ +
Sbjct: 99 YPKIDAPEPMDDEGRIITLEFDNCYVSQVYTPNSG--NELRRLDDRQIWDEKYRLYLQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+H ID+ HP+ + GFT ER+ F A+L
Sbjct: 157 DKNKPVIASGDYNVAHTPIDLKHPQ---------------NNHHNAGFTDEERRDFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R +H +++ +SW + K RIDY+IVS + D++ EM
Sbjct: 202 DTG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKQNNSGWRIDYYIVSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DHCP+ LE+
Sbjct: 259 DTGDR------KDHCPLILEI 273
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L VK F + D D LQE ++ A + P HQ
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQAGQIDFELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P +V + L K
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKH--EPDEVFYGLGKE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI + +Y++ Y PN+ + E R W++ ++ Q KP+I
Sbjct: 84 EHDQEGRVITLSYPDYYVVTCYTPNS--QNELKRLNYRMTWEEDFLAYLNQLDAEKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HE ID+ + K + GFT ER +F L+ G ID
Sbjct: 142 CGDLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG-YIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + E ++ +S WS + RIDYFIVSE L++++++ + L
Sbjct: 186 FRYFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------LNEV 237
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L+++
Sbjct: 238 VGSDHCPVELQIN 250
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F + D+ +QE ++ +++ D
Sbjct: 1 MKLVSWNVNGIRACLAKG---FMDFFNSVSADIFCIQETKVQQG----------QVQLDL 47
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ YQ W Y+GTAL ++ +P V + ++
Sbjct: 48 EGY------------------YQYWNYAIRKGYSGTALFTRE--KPLSVVDGIGMN--EH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRV+ AE++ FYL+ Y PN+ + R KW+ +E++ + + KP+I CG
Sbjct: 86 DNEGRVLTAEYDKFYLVTVYTPNS--QRGLTRLDYRMKWEDDFREYLKRLDTTKPVIICG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +PE A + N GFT ER++ +++ G D++R
Sbjct: 144 DLNVAHREIDIKNPE---ANRRNA------------GFTDEEREKMTMLIQSG-FTDSFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+L+ +K D WS + + RIDYF+VS+ ++D+I M YGS
Sbjct: 188 YLYPDK-TDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRDAGMYSE------IYGS 240
Query: 341 DHCPVSLEL 349
DHCPV LE+
Sbjct: 241 DHCPVFLEI 249
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L ++ F +F D D +QE ++ + D P HQ
Sbjct: 5 MKFISWNVNGLRACMQKG---FLDFFNEVDADFFCVQETKLQEGQIALDLPGYHQ----- 56
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 57 -------------------------FWNYAEKKGYSGTAIFTKH--EPLSVSYGI--GIP 87
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W++ F+ + KP+I
Sbjct: 88 EHDHEGRVITLEYDAFYLVTCYTPNS--QNELARLPYRMQWEEDFLAFLKRLDEVKPVIV 145
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GF+ ER + +L G D
Sbjct: 146 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLNSG-FTDT 189
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K+ + WS + + RIDYFI S L ++ +Q GI E Y
Sbjct: 190 FRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSRCLDEK-----LQSAGIHTE-VY 242
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 243 GSDHCPVEL 251
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 31/219 (14%)
Query: 134 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193
Y+GTA+ K +P KV++ +++ + +GR+I EF FY++ Y PN+ K + +
Sbjct: 7 YSGTAIFTKS--KPLKVTYGMDE---ERNSEGRMITLEFSDFYVVTMYTPNS--KRDLSR 59
Query: 194 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
+ R +W+ +Q ++ + + K P+I+CGDLNV+H E+DV + ++ +
Sbjct: 60 LEERLEWEDLVQGYLDKLNQKKPVIFCGDLNVAHTELDVKN---------------DRAN 104
Query: 253 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 312
G GFT ER++ +L G D YR+ + +D D WS + R RIDYF
Sbjct: 105 QGNSGFTQVEREKMNGLLDLG-FTDTYRYFNPARD-DQFTWWSYMKGVRERNIGWRIDYF 162
Query: 313 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351
IVS + I ++ H YGSDHCP+ LELS+
Sbjct: 163 IVSTSFMNTISNSDIHDH------VYGSDHCPIVLELSK 195
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 132/286 (46%), Gaps = 58/286 (20%)
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
+F D D+ LQE +M +E +L+L P + Y
Sbjct: 2 DFFKEADADIFCLQETKM----------------------QEGQLVL----DLPEYHQY- 34
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W S Y+GTA+ KK +P V++ L +++ +GRVI EFE FY + Y PN
Sbjct: 35 -WNSAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYFITVYTPN 89
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
+ + E R W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 90 S--QSELARLDYRMTWEDAFLAYLKKLEETKPVIFCGDLNVAHKEIDLKNP--------- 138
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
K + GFT ER +F A+L G ID YR+ + +K+ + WS + +
Sbjct: 139 ------KTNRKNAGFTDEERAKFSALLDAG-FIDTYRYFYPDKEGIYSW-WSYRFKAREK 190
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RIDYF S+ L+ R+ ++ L +GSDHCPV L+
Sbjct: 191 NAGWRIDYFCTSKALESRLEDAKI------LTNVFGSDHCPVELDF 230
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 142/323 (43%), Gaps = 63/323 (19%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+K ++WN +SL R K + + I +PD+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKQSREVLATIIDE-NPDIIAIQETKLSATGPT---KKH 56
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 150
Q + + F +Y+I W A YAGT L K P +
Sbjct: 57 Q------------------TILAEQFPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-I 97
Query: 151 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
S+ + +GR+I EF+ FY+ Y PN G + R+ WD++ ++++
Sbjct: 98 SYPEIDAPEPMDSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVS 155
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KPL+ GD NV+H+EID++HP + GFT ER F +
Sbjct: 156 LDQNKPLLSSGDFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNL 200
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
L +G D +R++H D+ +SW + K RIDY++ S + D+I+ EM
Sbjct: 201 LNKG-FTDTFRYVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM 257
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
L+ DH P+ LE++
Sbjct: 258 ------LDSGERRDHTPIVLEIN 274
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 147/311 (47%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V + E+ D D+ +QE ++ QE + D
Sbjct: 1 MKLISWNVNGIRSCVTKGFLEY---FKEMDADIFCIQESKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 46 E-----------------LEGYHQYWNYAEKKGYSGTAIFTKE--KPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWC 219
++ +GRVI EFE FY++ Y PN+ K E R W+ ++++ + KP+I C
Sbjct: 85 HDKEGRVITLEFENFYMVTVYTPNS--KNELARLDYRMVWEDAFRDYLKVLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G +D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNLRNAGFTEEERSKFTELLNAG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + + ++ WS + + RIDYF+VS +KD++ ++ + G
Sbjct: 187 RYFYPD-EVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVL------G 239
Query: 340 SDHCPVSLELS 350
SDHCPV L+++
Sbjct: 240 SDHCPVELKIN 250
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F ++ + D+ LQE ++ + G D
Sbjct: 1 MKLISWNVNGIRAAIKKG---FLDYFNEQNADIFCLQETKL-SEGQLDLE---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +
Sbjct: 47 ------------------LKGYYQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K P++ C
Sbjct: 85 HDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + +++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 187 RYFY--PNLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIHSQT------E 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 GSDHCPVVLFL 249
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+
Sbjct: 40 FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLI 95
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 237
Y PN+ ++E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 96 TVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP--- 150
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 296
K + GFT ER++ L G D++R+ + E+ +S WS
Sbjct: 151 ------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSY 194
Query: 297 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 195 RFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 241
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 37/273 (13%)
Query: 82 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 140
+ AA +K ++ ++L D +E KL L + L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFEKLDADMFCLQETKLQLHQIELELPGYEQY--WNSAVKKGYSGTAIF 68
Query: 141 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200
+ +P V + + +++ +GRVI AE++ FYL+ Y PN+ + E + R W
Sbjct: 69 TR--VKPLNVIYGIGIE--EHDQEGRVITAEYDNFYLVTCYTPNS--QRELARLEYRMTW 122
Query: 201 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
+ + ++L+ K P+I CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAYLLELDAKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFT 167
Query: 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 317
ER++ +L G D +R L+ D+ +SW + +GK R + + RIDYFI S
Sbjct: 168 DEEREKMTELLNAG-FTDTFRKLY--PDVTDAYSW-WSYMGKARDRNVGWRIDYFITSAR 223
Query: 318 LKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
L I+ ++ +GSDHCPV LE++
Sbjct: 224 LDKDIVEAKIH------PDIFGSDHCPVELEIN 250
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLK------TLLKDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F ++ D DV LQE ++ QE + D
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEADADVFCLQETKL------------QEGQID-- 45
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P + Y W+ A K Y+GTA+ K+ +P V + L ++
Sbjct: 46 ------------LDLPGYHQY---WNYAQKKGYSGTAMFTKE--EPVSVRYGL--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI AEF+ ++++ Y PN+ ++ R +W+ ++ + KP+I+CG
Sbjct: 87 DMEGRVIAAEFQEYFVVTCYTPNS--QDGLARLDYRMEWENAFLAYLKKLEEEKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 145 DLNVAHKEIDLKNP---------------KSNRKNAGFTDEERGKFTDLLGAG-FIDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + + RIDYF SE LKDR+++ ++ + GS
Sbjct: 189 YFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCASESLKDRLVSADIHTEVM------GS 241
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 242 DHCPVELVI 250
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 146/310 (47%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K F + + DPD++ LQE T
Sbjct: 4 LSLVSWNVNGLRAIIKKG---FITSLKSLDPDILCLQE---------------------T 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
K E+ ++ L P +K Y + S Y+GTA+L KK +P +++ L ++
Sbjct: 40 KGQVEDIKTALQLL--PDYKAY-VNCSKLKKGYSGTAILSKK--EPLDITYDLGHE--EH 92
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GRVI AEF+ F+L+N Y PN+G + N + R+ WD + KP++ CG
Sbjct: 93 DQEGRVITAEFDHFFLVNVYTPNSG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVLCG 150
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID+ A AK N NK G+T E F + L+ G +D +R
Sbjct: 151 DLNVAHEEIDI------ARAKQN----YNKS----AGYTQQEIDGFKSYLEHG-FVDTFR 195
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
E + ++ W+ + R RIDYF+VS L ++ + + F+G
Sbjct: 196 HFFPE---EVKYTYWNQMFNSRARNVGWRIDYFLVSPALLGQVKTAAIH------DQFHG 246
Query: 340 SDHCPVSLEL 349
SDHCPV L L
Sbjct: 247 SDHCPVELVL 256
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D+ LQE ++ + EL+ D
Sbjct: 1 MKLISWNVNGLRACVGKG---FLDYFKEQQADIFCLQETKLQ--------EGQIELELD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K+ +P V + + +
Sbjct: 49 --------------------GYHQYWNYAEKKGYSGTAIFTKE--KPISVHYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE FY++ Y PN+ +E+ R KW++ + ++L+ K P+I C
Sbjct: 85 HDKEGRVITLEFEKFYMITVYTPNS--QEKLARLDYRMKWEEDFKNYLLELDKKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER++ +L+ G +D++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLESG-FVDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K D WS + + RIDYF+VS+ +K+ M+G I E G
Sbjct: 187 RYFYPNK-TDIYSWWSYRFSARAKNAGWRIDYFLVSDRIKEN-----MKGAEIHTE-ILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 240 SDHCPVLLNI 249
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 66/323 (20%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK- 88
E +S+ ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ A +
Sbjct: 3 ELTSKLIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEANEVQI 59
Query: 89 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQP 147
D P +Q +W+ A K YAGTA+ K+
Sbjct: 60 DLPGYYQ------------------------------YWNYAKRKGYAGTAVFTKE---- 85
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
K ++ + + + +GR I EF FY ++ P +G K + F R W + + +
Sbjct: 86 KPITVANGFGVPEVDGEGRSITLEFPNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNY 143
Query: 208 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
V + KP+I GD++V+HE+ID++ P+ ++ GFT ERK F
Sbjct: 144 VTKLMQYKPVIIGGDMSVAHEKIDLAEPD---------------DNHRHAGFTGIERKEF 188
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G ID +R+ H ++ +S+ + K G R+DYF+VS L+D+II +
Sbjct: 189 SELLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSHNLEDKIINTK 245
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
+ L GSDHCP+ L+L
Sbjct: 246 I------LNNIMGSDHCPIELDL 262
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +KN F NF+ PD++ +QE ++ + +L D
Sbjct: 1 MKMLSWNVNGIRACLKNG---FMNFLERESPDIMCIQETKVQSG--------QVQLGLD- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A+ K Y+GTA+ K +P V +E + +
Sbjct: 49 --------------------GYFQYWNYAERKGYSGTAIFTK--IKPNNVILGMENS--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI EF+ +YL+N Y PN+ + + R+KWD+ ++ + KP+++C
Sbjct: 85 HNNEGRVITLEFDEYYLVNVYTPNS--QRGLTRLEYRQKWDEDFLSYIKTLETKKPVVFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER F I+ G +D +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + E D +S+ N + R RIDYF +S+ L++ + + + G
Sbjct: 187 REFNNEPDNYSWWSYRFN--ARARNIGWRIDYFCISKSLRNNLKDAYI------MPEVMG 238
Query: 340 SDHCPVSL 347
SDHCPV +
Sbjct: 239 SDHCPVGI 246
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ + +E+
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I
Sbjct: 85 -HDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ + K + GFT ER++F +L G D
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + RIDYF+VS++L +R++ ++ I
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIHTDII----- 238
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L+L+
Sbjct: 239 -GSDHCPVELDLN 250
>gi|85000047|ref|XP_954742.1| endonuclease [Theileria annulata strain Ankara]
gi|65302888|emb|CAI75266.1| endonuclease, putative [Theileria annulata]
Length = 586
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 152/332 (45%), Gaps = 37/332 (11%)
Query: 37 SKKDPLKFVTWNANSLLLRV--KNNWPEFSNFITTFDPDVIALQEVRMPAA--------- 85
S+KDP +TWN + L L K W F + DPD++ LQ+V++ ++
Sbjct: 270 SEKDPKTILTWNVSGLALSKSKKTIWESFLQILKQHDPDIVVLQDVKLCSSEILGKQPKL 329
Query: 86 -----GSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALL 140
G +P QE++D L+ L FK Y + SL+ + AG +
Sbjct: 330 SARTYGGHVSPSYAQEVQDAD---------LVNELKRTTFKKYYLVHSLSAWRIAGQLVF 380
Query: 141 VKKCFQPKKVSFSLE-KTALKYE-PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198
VKK F+ K+ ++L K KY P+GR I+ +F +FYL++ +P GW S + R
Sbjct: 381 VKKEFECLKMRYNLNIKANAKYHHPEGRCIILQFNSFYLISLLSPVQGWI--NRSVRIRS 438
Query: 199 KWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 257
+WD+ + F+ S K I G LN + ++ID+S PE K V +E+ G PG
Sbjct: 439 RWDRELATFLNNSKSEKATIITGCLNCAPQDIDLSDPERLKQEK--SIVLHKQEELGFPG 496
Query: 258 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE 317
+R+ F +L G ++D +R H D N K R +R + ++S+
Sbjct: 497 SRDVDREGFKWLLDAGNMVDVFRVKHP---YDGTEKTEKNINDKTRCA-VRTNLVLMSKN 552
Query: 318 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ CE+ G+ +L G H P L L
Sbjct: 553 FLRNVKFCEIIGNVNDLNP-SGWRHLPQLLRL 583
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 150/312 (48%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K +F + + + DV+ LQE T
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFFQSLASLECDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ ++ AL K Y ++ + A K Y+GT+++ + K + + + +
Sbjct: 37 KAQDDQ---VIEALCD--LKGYHVFTNSAIKKGYSGTSIITR----VKPIDVTRDIGIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ AEF+ FYL+ Y PN+G + S+ R +WD +V Q KP++ C
Sbjct: 88 HDQEGRVLCAEFDAFYLVTVYTPNSGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVVC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H +ID++ P+ PN G+T E +++ G +D +
Sbjct: 146 GDLNVAHRDIDIARPK------------PNYNK--SAGYTQKEIDGIDSLIAAG-YVDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L + +SW G + R R+DYF+VS +LK++I ++ +
Sbjct: 191 RHLFPDT---VKYSWWSYRAGARERNVGWRLDYFLVSHKLKEQISGADIH------NDIH 241
Query: 339 GSDHCPVSLELS 350
GSDHCPVS++LS
Sbjct: 242 GSDHCPVSVQLS 253
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 148/348 (42%), Gaps = 105/348 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++FV+WN N L +K F + + D D++ALQE ++ +
Sbjct: 1 MRFVSWNVNGLRAVLKKG---FEDIVCELDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y WS A+ K Y+GTA+ K+ QP + L L
Sbjct: 44 ------------TLDLPQYREY---WSYAEKKGYSGTAIFCKE--QPLQALHGLGFPHLD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 TE--GRIVALEFPKFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLEEGVLP 139
Query: 214 -------------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 242
KP++ CGD NV+H+EID+ +P
Sbjct: 140 AGVPVERPALGEGHVAISELPLTQPGETADPKPVVMCGDFNVAHQEIDLKNPG------- 192
Query: 243 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 301
PN+ G+ GF+ ER +F +L+ G +D++R LH D+ +S WS +
Sbjct: 193 -----PNR---GKAGFSDEERGKFTDLLEVG-FVDSFRHLH--PDVTGAYSWWSYRFKAR 241
Query: 302 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RIDYF+VS+EL +I + + + YGSDHCPV +EL
Sbjct: 242 QTNAGWRIDYFLVSDELAPKIQSACI------YDEVYGSDHCPVGIEL 283
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 134/310 (43%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV+WN N L +K F T D D +QE +M + AP+ + E
Sbjct: 1 MKFVSWNVNGLRACLKKG---FEETFRTLDADFFCIQETKMQPGQADFAPEGYTEYI--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+S Y+GTA+ + V + LE+ +
Sbjct: 55 -------------------------YSADKKGYSGTAIWART--PALSVRYGLEEDLHNH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
E GR I E+ FYL+N Y PN+ + E R +W+ ++ ++ KP+I CG
Sbjct: 88 E--GRAITLEYPDFYLVNLYVPNS--QNELARIDYRMQWEDDLRRYLQALDAQKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P PN+ G GF+ ER + +L G D +R
Sbjct: 144 DLNVAHTEIDLKNP------------GPNR---GAAGFSDQERGKLDELLAAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
LH D +S WS + R RIDYF+VS L +I ++ L G
Sbjct: 188 HLH--PDATGIYSWWSMRFRARERNAGWRIDYFLVSNRLAPQIRKADI------LMDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV+LEL
Sbjct: 240 SDHCPVTLEL 249
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 137/311 (44%), Gaps = 61/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F D DV +QE +M ++ A + ++
Sbjct: 1 MKLISWNVNGLRACLNKG---FLDFFQEADADVFCVQETKMQQGQAELALEGYE------ 51
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
Q W S Y+GTA+ + P V++ + ++
Sbjct: 52 ----------------------QFWCSAEKKGYSGTAVFTR--IPPVSVAYGIGIP--EF 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EFE F L+N Y PN + R +W+ + ++L+ KP++ CG
Sbjct: 86 DTEGRVITVEFEKFTLINVYTPNA--QRGLTRIDFRMQWEDAFRVYLLRLQESKPVVVCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ + K + G GF+ ER + +L+ G L D++R
Sbjct: 144 DLNVAHNEIDLKN---------------YKTNRGNAGFSDEERGKMTELLQSG-LTDSFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+L+ EK C WS + RIDYF+ S+ LKD+I + GS
Sbjct: 188 YLYPEK-TGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQI------EDSVIYSEVLGS 240
Query: 341 DHCPVSLELSE 351
DHCP+ L L E
Sbjct: 241 DHCPIGLFLRE 251
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T D D LQE +M
Sbjct: 2 IKLISWNVNGLRACCDKG---FRDIFTQLDADFFCLQETKM------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ K QP +V++ L +
Sbjct: 40 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTKH--QPLQVTYGLGID--E 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E E F+L+ Y PN+ ++ R WD + ++ + KP++ C
Sbjct: 86 HDHEGRVITLEMEKFFLVTVYTPNS--QDGLKRLDYRMTWDDDFRAYLQKLDQSKPVLVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID +
Sbjct: 144 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E+ + WS + + RIDYF+ S L D++ ++ +G
Sbjct: 188 RYFYPEQTNIYSW-WSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHTE------IFG 240
Query: 340 SDHCPVSLEL 349
SDHCPV + +
Sbjct: 241 SDHCPVEVTV 250
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 73/315 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 81
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 82 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 139
Query: 217 IWCGDLNVSHEEIDVS--HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
I+CGDLNV+HE ID+ H +A GFT ER +F +L G
Sbjct: 140 IFCGDLNVAHENIDLKNWHSNHHSA-----------------GFTDEERTKFDRLLAAG- 181
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
D +R + ++ D WS + RIDYFI S++L +++ +
Sbjct: 182 YTDTFRHFYPDQ-TDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNE---- 236
Query: 335 EGFYGSDHCPVSLEL 349
+GSDHCPV L++
Sbjct: 237 --IFGSDHCPVELDI 249
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 142/307 (46%), Gaps = 63/307 (20%)
Query: 45 VTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKAS 104
++WN N L + F +F + D D+ +QE +M
Sbjct: 2 ISWNVNGLRACMTKG---FMDFFNSVDADIFCIQESKM---------------------- 36
Query: 105 REEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEP 163
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +++
Sbjct: 37 QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDK 85
Query: 164 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 222
+GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I CGDL
Sbjct: 86 EGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDL 143
Query: 223 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 282
NV+H EID+ +P K + GF+ ER++F +L G ID +R+
Sbjct: 144 NVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYF 187
Query: 283 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 342
+ K+ + WS + + RIDYF+ S LK R+ + + GSDH
Sbjct: 188 YPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDH 240
Query: 343 CPVSLEL 349
CPV LEL
Sbjct: 241 CPVGLEL 247
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 65/323 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F++Y + A YAGT + KK + K
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATY 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ FY Y PN G + R+ WDK+ E+ +
Sbjct: 100 PEIGAPG-SMDMEGRIVTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KPL+ CGD NV+H+EID+++P F+A GFT ER F
Sbjct: 157 DKNKPLVLCGDFNVAHKEIDLANPNNNHFSA-----------------GFTDEERTGFTN 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L EG +D +R ++ D++ ++W I K RIDYF+VS+ +KDR+
Sbjct: 200 LL-EGGFVDTFRLIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDRVKKSH 256
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 257 MMDSGQR------QDHTPIILEI 273
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 138/309 (44%), Gaps = 65/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F +F+ + D+I LQE K H E D T
Sbjct: 1 MKMISWNVNGIRSILGKG---FLDFVGSSCADIICLQET-----------KAHPEQVDLT 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L+ P + W S Y+GTA+ K QP ++ L ++
Sbjct: 47 -------------LNDYP---HHYWNSAIKKGYSGTAIFCK--VQP--IASQLGIGIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI EF +YL+N Y PN + E R KWD ++ + S KP+I+CG
Sbjct: 87 DNEGRVITLEFSDYYLVNVYTPNA--QRELTRLDYRMKWDADFLNYLKKLESHKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+++P K + G GFT ER F IL+ G +D +R
Sbjct: 145 DLNVAHKEIDLANP---------------KTNQGNAGFTPQERDGFSKILESG-FVDTFR 188
Query: 281 FLHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+ GF WS + R RIDYF S LK+++ + + +
Sbjct: 189 LFNNSG----GFYTWWSYMAGARPRNIGWRIDYFCTSYNLKNKVKSSAIHAQVM------ 238
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 239 GSDHCPVEL 247
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 136/289 (47%), Gaps = 60/289 (20%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GF+ ERK+F +L G ID +R+ + K+ + WS
Sbjct: 144 ---------KTNRKNAGFSDEERKKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQA 192
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 193 RDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 145/314 (46%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+TTF D D +QE ++ A +++
Sbjct: 1 MKLISWNVNGLRAAVKHG------FVTTFNELDADFFCVQETKLQAG----------QIE 44
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 45 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 81
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 82 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 139
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I+CGDLNV+HE ID+ + + + GFT ER +F +L G
Sbjct: 140 IFCGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAG-YT 183
Query: 277 DAYR-FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 184 DTFRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE----- 236
Query: 336 GFYGSDHCPVSLEL 349
+GSDHCPV L++
Sbjct: 237 -IFGSDHCPVELDI 249
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N L +K F +F T + DV LQE+++
Sbjct: 2 LKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P + + L L
Sbjct: 40 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPLSIQYGLGLEEL- 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF+ +Y++ Y PN+ + R W+ I FV KP++ C
Sbjct: 87 -DTEGRIITLEFDNYYVITVYTPNS--QHGLLRLDYRLLWEDAILSFVKALDNHKPVLLC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ NK++ GFT+ ER + L++G +D +
Sbjct: 144 GDLNVAHEEIDLRNPK------------ANKKN---SGFTLEERGKMTQFLEKG-FVDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R H E++ + WS + + RIDYF+ S+ L +Q I ++ +G
Sbjct: 188 RHFHPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPALQSAKIHID-IWG 240
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 241 SDHCPVELQV 250
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 153/321 (47%), Gaps = 63/321 (19%)
Query: 37 SKKDPLKFVTWNANSL--LLRVKNNWPE----FSNFITTFDPDVIALQEVRMPAAGSKDA 90
S+K+ +K ++WN N L ++ KN E + + D DV+ LQE ++ KD
Sbjct: 33 SEKNLVKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQETKLQ---EKDV 89
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPK 148
Q++ S +W+ + SK Y+G AL+ + +P
Sbjct: 90 EAIKQKILGGYSNS---------------------FWTCSTSKLGYSGCALISR--IKPL 126
Query: 149 KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
V++ L + +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++
Sbjct: 127 SVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYL 183
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
L+ KP+I GDLN +HEEID+ P+ NK GFT ER F
Sbjct: 184 LELEKRKPVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTSEERTSFQ 228
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+ L+D +R K+ + GF+ WS + + K R+DYF+VS+ L C
Sbjct: 229 TNFIDKGLVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGL-----VCS 280
Query: 327 MQGHGIELEGFYGSDHCPVSL 347
+ + L GSDHCP+ L
Sbjct: 281 VADSYV-LPQLDGSDHCPIGL 300
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 67/318 (21%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 212
+ ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 TGLSGSDHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEK 422
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP++ GDLN +HEEID+ +P NK GFT ER+ FGA +
Sbjct: 423 SKPVVLTGDLNCAHEEIDIFNP------------AGNKR---SAGFTEEERQSFGANFLD 467
Query: 273 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
+D +R K+ G++ W G+ K R+DYF+VS+ IA +
Sbjct: 468 KGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSY 519
Query: 332 IELEGFYGSDHCPVSLEL 349
I L GSDHCP+ L L
Sbjct: 520 I-LPDINGSDHCPIGLIL 536
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 144/314 (45%), Gaps = 70/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN NFI +PD++ LQE++ +G D P+ +
Sbjct: 1 MKILSWNVNGIRAAVKNG---ILNFINEENPDIVLLQEIK---SGKNDLPEELHHM---- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+I+ + A+ K Y+GT L K +P + +S
Sbjct: 51 --------------------GYKIFINPAEKKGYSGTMALSK--VEP--LDYSSGIGIKD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
Y+ +GRV + +++ FY++NTY PN+ + + +D + EF + KPLI
Sbjct: 87 YDSEGRVQILKYDNFYIINTYFPNS--QHGLTRLDYKIDFDNKFLEFCEKLRKEKPLIIT 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+HEEID++ P K++ GFTI ER L G ID Y
Sbjct: 145 GDFNVAHEEIDIARP---------------KDNENNAGFTIQERNWMTEFLNHG-YIDTY 188
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE----LKDRIIACEMQGHGIELE 335
R+ HKE +S+ N K G RIDYFIV+++ +KD II LE
Sbjct: 189 RYFHKEPGHYSWWSYRFNARAKNIG--WRIDYFIVTDDFIKNVKDSII----------LE 236
Query: 336 GFYGSDHCPVSLEL 349
GSDH P+ L L
Sbjct: 237 NVKGSDHAPLELLL 250
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VK + E+ + + + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKKGFLEYFDEV---EADIFCIQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ LM +Y+ +W+ A+ K Y+GTA+ K +P V++ ++
Sbjct: 39 ---QEGQIDLM-------LNDYEQYWNYAEKKGYSGTAVFTK--IKPISVAYGIDIE--H 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ FYL+N Y PN + + + R +W+ + ++ KP+I C
Sbjct: 85 HDTEGRVITLEYDNFYLVNVYTPNA--QPKLARLEYRMQWEDDFRRYLNDLDEKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + PGF+ ER +F +L G ID++
Sbjct: 143 GDLNVAHNEIDLKNP---------------KSNRKNPGFSDEERGKFTNLLDSG-FIDSF 186
Query: 280 RFLHKE-KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
RF + + +M +S+ N + RIDYF VS +LK+ E++ I ++
Sbjct: 187 RFFYPDATEMYTWWSYRFN--ARENNAGWRIDYFCVSNKLKN-----ELKNAEIHMD-IL 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 239 GSDHCPVVLEI 249
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 148/317 (46%), Gaps = 74/317 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F+ + D D I LQE T
Sbjct: 1 MKIISWNVNGIRAVMGKG---FAESLEKLDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL- 159
KA ++ + ++ S Y I+ + A K Y+G ALL K+ +P ++ L+ +
Sbjct: 37 KAQDDQVQTALESIDS-----YHIYSNSAGRKGYSGVALLTKQ--EPIQI---LQDIGID 86
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI AEFE F LLN Y PN+G E+ R+ WDK + + Q S KPLI
Sbjct: 87 EHDQEGRVIAAEFENFILLNVYVPNSG--EKLVRLDYRKIWDKELLAYFQQLNSRKPLIA 144
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD NV+H+EID++ P+ A N G+T E +L+ G +D
Sbjct: 145 CGDFNVAHQEIDIARPK----ANYN----------KSAGYTQTEIDGISRMLEAG-FVDT 189
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEEL----KDRIIACEMQGHGI 332
+R LH E +SW G R K + RIDY + S+ L K+ IA ++
Sbjct: 190 FRHLHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALIGKVKNAFIAPDI----- 240
Query: 333 ELEGFYGSDHCPVSLEL 349
+GSDHCPV +E+
Sbjct: 241 -----FGSDHCPVGIEI 252
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 141/325 (43%), Gaps = 78/325 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F+ D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FNEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V + AL
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGL 142
Query: 214 -------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F
Sbjct: 143 GYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERSSF 187
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
++L G D +R LH D++ +S WS + RIDYF+VS+ L+ I +
Sbjct: 188 TSLLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESA 244
Query: 326 EMQGHGIELEGFYGSDHCPVSLELS 350
+ + GSDHCPV L+++
Sbjct: 245 SI------YDEVMGSDHCPVGLDIA 263
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N + + F + D D+ LQE + + + P HQ
Sbjct: 1 MKCISWNVNGIRACITKG---FEDRFRELDADIFCLQETKCQQGQVELELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ + Y+GTA+ KK K +E+
Sbjct: 53 -------------------------YWNYANRRGYSGTAVFTKKEPISVKNGIGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GRVI EF+ FY + Y PN+ + E + R +W++ ++L+ KP+I
Sbjct: 85 -HDKEGRVITLEFKEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQESKPVIC 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ +P K + GFT ER F +L+ G ID
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K+ + WS + + RIDYFI S LK++ +QG I E
Sbjct: 186 FRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSPSLKEK-----LQGAAIHTE-IM 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 239 GSDHCPIELDI 249
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 140/316 (44%), Gaps = 61/316 (19%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE 96
S+K + +WN N L +K + P F + + + + D+I +QE ++
Sbjct: 2 SQKHTYRLASWNVNGLRAVMKKD-PNFIDVVQSLNVDIIGIQETKL-------------- 46
Query: 97 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 155
+E I AL P Y WS A+ K Y+GTA+ K+ P + ++
Sbjct: 47 ---------QEGQI---ALDLP---GYTQTWSYAERKGYSGTAVFSKEA--PLQTIHTIG 89
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 214
+A E GRV EF F+ +N Y PN+ K E R +WD+ + F+ K
Sbjct: 90 CSAADNE--GRVCALEFNDFWFVNVYTPNS--KNELARLDERMEWDEAYRSFLHTLDAKK 145
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I CGD N +HEEID+ +P N ++ GF+ ER F +L G
Sbjct: 146 PVITCGDFNCAHEEIDLKNP------------ATNHQN---AGFSDEERASFTKLLNTG- 189
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
D +R H D WS + R RIDYF+VS+ +K+++ +
Sbjct: 190 FTDTFRAAHPTL-TDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIHA----- 243
Query: 335 EGFYGSDHCPVSLELS 350
YGSDHCPV L ++
Sbjct: 244 -DVYGSDHCPVGLTIT 258
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 65/314 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +++N N L V N+ E +F D D LQE +M A G D
Sbjct: 1 MKCISFNVNGLRAIVGKNFEE--DF-KKLDADFFCLQETKMQA-GQLDLQ---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +++ A+ K Y+GTA+ K ++P V++ + +
Sbjct: 47 ------------------FDGYYSYFNYAERKGYSGTAIYTK--YKPLNVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ F+ + Y PN+G E + R W+ ++++L + K +I C
Sbjct: 85 HDTEGRVITLEYDNFFFITVYTPNSG--SELKRLEYRMSWEDDFKDYLLTLNKDKGVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GFT ER++F +L G ID +
Sbjct: 143 GDLNVAHTEIDLKNP---------------KTNVKNAGFTPEEREKFTKLLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D+ +S WS + RIDYF+VS++LK +++ ++ +
Sbjct: 187 RYFN--PDLTGAYSWWSYRFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHND------IF 238
Query: 339 GSDHCPVSLELSEA 352
GSDHCPV L L E
Sbjct: 239 GSDHCPVELVLDET 252
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + V+ F F + D D+ +QE +M
Sbjct: 1 MKFISWNVNGIRACVQKG---FLEFFSQADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L S + Y +W+ A K Y+GTA+ K +P V + + +
Sbjct: 39 ---QEGQL-------SLELEGYHQYWNYAVKKGYSGTAVFSK--IEPLSVVYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FY + Y PN + E R KW+ + ++ + KP++
Sbjct: 85 HDQEGRVITLEYEDFYFVTVYTPNA--QNELARLDYRMKWEDDFRAWLKKLEENKPVVVT 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H+EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDMNVAHKEIDLKNP---------------KTNRKSAGFSDEERQKFTELLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + + RIDYF VSE LKDR++ GI L G
Sbjct: 187 RYFYPDQEGIYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDA-----GI-LTDIMG 239
Query: 340 SDHCPVSLELS 350
SDHCPV LE++
Sbjct: 240 SDHCPVVLEMN 250
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 143/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N + + F D D+ LQE + K + P HQ
Sbjct: 1 MKFISWNVNGIRACITKG---FEERFHELDADIFCLQETKCQQGQVKLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ + Y+GTA+ K+ +P ++ +
Sbjct: 53 -------------------------YWNYANRRGYSGTAIFTKR--EPLSAAYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GRVI EF+ +Y + Y PN+ + E + R KW++ ++L+ KP+I
Sbjct: 84 EHDKEGRVITLEFDEYYFVTVYTPNS--QSELRRLEYRMKWEEDFLAYLLKLQEKKPVIC 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER F L+ G ID
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTRALESG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + +K+ + WS + + RIDYF+VS LK+++ ++ G +
Sbjct: 186 FRYFYPDKEGVYSW-WSYRFRAREKNAGWRIDYFLVSPSLKEKLQDAKIHGEIM------ 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + D DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVDADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P V++ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVNYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTCL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 67/314 (21%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELK 98
+ +K ++WN N L VK F + D D+ ALQE+++ + D P ++
Sbjct: 2 EEIKMISWNVNGLRAVVKKG---FMDEFKKLDADLFALQEIKLQEGQIEIDLPHYYE--- 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
F NY A+ K Y+GTA+ KK +P V++ +
Sbjct: 56 ---------------------FYNY------AEKKGYSGTAIFSKK--EPISVNYGI--G 84
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 216
+++ +GRVI EFE FY + Y PN+ K E + R+ W+ + ++ + K +
Sbjct: 85 IDEHDKEGRVITLEFENFYFVTCYTPNSKRKLERLDY--RQVWEDDFRNYLNELRKNKEV 142
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGDLNV+H+EID+++P N++ GFT ER++F +LK G I
Sbjct: 143 ILCGDLNVAHKEIDLANP------------STNRK---SAGFTDEEREKFTELLKNG-YI 186
Query: 277 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R+ + D+ +S WS + R RIDYF+VSE L+ ++ ++ +
Sbjct: 187 DTFRYFY--PDLKDEYSWWSYFAKSRERNVGWRIDYFVVSEGLEKHLVDAKIHQEVM--- 241
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 242 ---GSDHCPVELKI 252
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 31/232 (13%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
+ Y+ W +D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++
Sbjct: 1042 IEGYETLWCCSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVV 1097
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 237
N Y P+ G + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 1098 NVYVPHAG--RNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP--- 1152
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
K + GF++ ER A L G +D YR L+ EK+ F W
Sbjct: 1153 ------------KTNTNSAGFSVEERDGMTAFLGNG-YVDIYRHLYPEKEKAYTF-WIYM 1198
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ R+DYF+VS+ D + C+ H GSDHCP+SL +
Sbjct: 1199 RNARPNNVGWRLDYFLVSQRFVDNV--CDNIIHS----DVMGSDHCPLSLHI 1244
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R FS+ D D LQE +M A G D
Sbjct: 1 MKLISWNVNGL--RACEG-KGFSDTFRELDADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y+ +W+ A+ K Y+GTA+ K P V++ + +
Sbjct: 47 ------------------FEGYESYWNYAEKKGYSGTAIFTKH--HPLSVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++ K P+I C
Sbjct: 85 HDHEGRVITLEMEDFYLVTCYTPNS--QDGLKRLDYRMTWENDFRAYLKGLDAKKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ ++N GFT ER++F +L G D++
Sbjct: 143 GDLNVAHQEIDLKNPK---TNRMNA------------GFTDQEREQFSTLLASG-FTDSF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + E+ +S WS + + RIDYF++S+ L++R+ + +
Sbjct: 187 RYKYPEQ---VTYSWWSYRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQIL------ 237
Query: 339 GSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 238 GSDHCPVELTL 248
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T D DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEADADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P + + L +
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKE--EPLSIQYGLGSE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GR+I EF+ Y++ Y PN+ + R W++ I FV KP+I C
Sbjct: 85 HDTEGRMIALEFDGHYVVTVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNQKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ NK++ GFT ER + L +G +D +
Sbjct: 143 GDLNVAHEEIDLKNPK------------ANKKN---SGFTPDERGKMTQFLTDG-FVDTF 186
Query: 280 RFLHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H + GF WS + + RIDYFI S++L R+ + ++
Sbjct: 187 RHFHP---TETGFYSWWSYRSNCREKNVGWRIDYFIASQKLLPRLKSAKIHA------DV 237
Query: 338 YGSDHCPVSLELS 350
+GSDHCPV L+++
Sbjct: 238 WGSDHCPVELQIA 250
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 161/336 (47%), Gaps = 65/336 (19%)
Query: 17 PALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIA 76
P L D T++ + N +K +WN + L VK + +++ +PDV+
Sbjct: 39 PILYEDPPDKMTSKDGRDAN-----MKITSWNVDGLRAWVKK---KGLDWVREENPDVLC 90
Query: 77 LQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--Y 134
LQE + K P + + ++ PFK +W+ +D K Y
Sbjct: 91 LQETK---CAEKSLPAD------------------ITSMPEYPFK----YWAGSDDKEGY 125
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G A+L K +P KV++ + K +++ +GRVI AEF +F+L+ Y PN+G
Sbjct: 126 SGVAMLSKT--EPIKVTYGIGKE--EHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRL 179
Query: 195 QRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R+ WD + ++ + KP++ CGDLNV+H+EID+ +P+ NK++
Sbjct: 180 DYRKTWDVDFRTYLSELDIQKPVVLCGDLNVAHQEIDLKNPK------------GNKKN- 226
Query: 254 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 313
GFT ER+ F +L+ G +D++R L+ E+ F W+ + + R+DYF+
Sbjct: 227 --AGFTAEEREGFSQLLEAG-FVDSFRELYPEQTHAYSF-WTYMMNARDKNVGWRLDYFV 282
Query: 314 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+S L + +++ GSDHCP++L +
Sbjct: 283 LSSSLLPALCDSKIRNQ------VRGSDHCPITLHI 312
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Q W S Y+GTA+ + +P V+ + ++
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AEF+ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEFDNFYLVCCYTPNS--QRELARLDYRMAWEDAFRAYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GF+ ER + +L+ G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLESG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +
Sbjct: 188 YLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKINEAKIH------QQIF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 141/318 (44%), Gaps = 55/318 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL +++ P + I PD ++QE ++P G K Q
Sbjct: 1 MNFISWNIDSLNAAIEHKSPRGELTFALLSQIAAQKPDFFSIQESKLPVTGLN--AKQTQ 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
L D +R S+PP A YAG L K+ QP +
Sbjct: 59 VLNDLFPG----YCTFVRN-STPP----------AKKGYAGVITLAKE--QPISFNCPTI 101
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+IL E+ FYLLN Y PN+G + + R WD + +V Q + K
Sbjct: 102 DAPDTMDEEGRIILLEYPDFYLLNVYTPNSG--DGLKRLEMRGLWDDNFRVYVSQLAERK 159
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
+I+ GDLNV+HEEID+ +P + GFT ER +F +L+ G
Sbjct: 160 AVIFSGDLNVAHEEIDLKNPS---------------TNHQSAGFTDQERDKFTQLLEAG- 203
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +RF H + D +SW N + K RIDY++VS LKD+I M G
Sbjct: 204 FTDTWRFQHPD---DVAYSWWSQRNRMAKPNNAGWRIDYYLVSSTLKDKIKKSGMIDSGT 260
Query: 333 ELEGFYGSDHCPVSLELS 350
+DH P+ L+++
Sbjct: 261 R------ADHAPIYLQMA 272
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ +K +P V++ + +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEEREKMTQLLSHG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++S+ L+ +++ I E F
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKDASIHTEIF- 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ ++L
Sbjct: 238 GSDHCPIEVDL 248
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D DVIA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADVIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVSKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 63/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F + T + D LQE +M A G D
Sbjct: 1 MKLISWNVNGLRACCDKG---FRDAFTRLNADFFCLQETKMQA-GQLDLA---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ A+ K Y+GTA+ + QP VS+ + +
Sbjct: 47 ------------------FDGYTSYWNYAEKKGYSGTAIFTRH--QPLNVSYGMGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++L+ K P++ C
Sbjct: 85 HDREGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEDAFRRYLLELDAKKPVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER++F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRMNAGFTDQEREKFQTLLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF+ S L A +++ I E F G
Sbjct: 187 RYFYPEQEGIYSW-WSYRFRAREKNAGWRIDYFLASARL-----AGKLESAAIHTEIF-G 239
Query: 340 SDHCPVSL 347
SDHCPV +
Sbjct: 240 SDHCPVEV 247
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 140/325 (43%), Gaps = 78/325 (24%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L VK F D DV ALQE ++
Sbjct: 1 MRLISWNVNGLRAVVKKG---FDEAFAALDADVFALQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L Y WS A+ K Y+GTA+ ++ +P +V + AL
Sbjct: 39 ---QEGQIEL-------DLPGYVQNWSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 87 TE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKNLEAGVVPEGL 142
Query: 214 -------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
KP+I CGD NV+H+EID+ +P + + G PGF+ ER F
Sbjct: 143 GYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGSPGFSDEERSSF 187
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
++L G D +R LH D++ +S WS + RIDYF+VS+ L+ I +
Sbjct: 188 TSLLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESA 244
Query: 326 EMQGHGIELEGFYGSDHCPVSLELS 350
+ + GSDHCPV L+++
Sbjct: 245 SI------YDEVMGSDHCPVGLDIA 263
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 66/321 (20%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDA 90
+SE ++ +KF++WN N L +++ F N T D D+ A+Q+ R+ P D
Sbjct: 2 TSELIERRIIMKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDL 58
Query: 91 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 149
P +Q +W+ A K YAGTA+ K+ K
Sbjct: 59 PGYYQ------------------------------YWNYAKRKGYAGTAVFTKE----KP 84
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
++ + + + +GR I EF FY ++ P +G K + F R W + + +V
Sbjct: 85 ITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVT 142
Query: 210 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ KP+I GD++V+H++ID++ P+ ++ GFT ERK F
Sbjct: 143 KLMQYKPVIIGGDMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSE 187
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+L G ID +R+ H ++ +S+ + K G R+DYF+VS L+D++I ++
Sbjct: 188 LLNAG-FIDTFRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI- 243
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
L GSDHCP+ L+L
Sbjct: 244 -----LNNIMGSDHCPIELDL 259
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + VKN F +F + D+ +QE ++
Sbjct: 1 MKLISWNVNGIRACVKNG---FLDFFAKENADIFCIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ K +P K+ + + K
Sbjct: 39 ---QEEQI---------PFRVEGYYQYWNFAQKKGYSGTAIFSK--MEPNKIVYGMGKE- 83
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+++ +GRVI EF +Y++ Y PN+ + + R KW++ ++ + KP+I
Sbjct: 84 -EHDQEGRVITLEFGEYYVVTVYTPNS--QRGLARLEYRMKWEEDFLNYLKDLENSKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
CGDLNV+H EID+ +P N+++ GF+ ER +F ++ G +D
Sbjct: 141 VCGDLNVAHTEIDLKNP------------STNRKN---AGFSAEERNKFDELMNNG-FVD 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+RF + K + WS + RIDYF VS LKD++ I +
Sbjct: 185 TFRFFYPNK-TEAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQL------KEAIIYKNV 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 238 LGSDHCPVGLEI 249
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 150/335 (44%), Gaps = 77/335 (22%)
Query: 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAP 91
S E + + +F +WN N L +K P+FS + + D++A+QE ++
Sbjct: 9 SQPERADERIYRFASWNVNGLRALMKKE-PDFSEIAASLNADILAIQETKL--------- 58
Query: 92 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKV 150
QE + D Y WS A K Y+GTA+ ++ QP +
Sbjct: 59 ---QEGQIDLD-----------------LAGYHQTWSYAARKGYSGTAVFSRE--QPIRT 96
Query: 151 -----SFSLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 202
+ + EP +GRV EFE F+ + Y PN+ ++ R WD+
Sbjct: 97 LRADAMLDVVEGGELLEPAIREGRVCALEFERFWFADVYTPNS--QDGLARLPVRLAWDE 154
Query: 203 RIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259
+ F+ Q KP++ CGD NV+H EID+ +P K + G GF+
Sbjct: 155 AYRAFLKQLERMGDKPVVTCGDFNVAHNEIDLRNP---------------KSNRGNAGFS 199
Query: 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM----RIDYFIVS 315
ER F +L+ G D +R+L+ D+ +SW ++ +R RIDYF+VS
Sbjct: 200 DEERASFSRLLEAG-FTDTFRYLY--PDVRDAYSWWSY---RFHARRTNAGWRIDYFLVS 253
Query: 316 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+ ++DRI+ ++ + +GSDHCPV L ++
Sbjct: 254 DSVRDRIVEATIR------QDVFGSDHCPVELVIA 282
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 143/315 (45%), Gaps = 63/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L ++ F++F + D+ +QE +M H E D
Sbjct: 1 MKLISWNVNGLRACMQKG---FADFFNREEADIFCVQETKM-----------HPEQADFA 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ + P V + + + +
Sbjct: 47 ------------------FDGYQSFWNSAEKKGYSGTAVFTR--VPPLSVRYDMGEP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
+ +GRVI E E F+L+N Y PN+ + + R +W+ + ++L + KP++ C
Sbjct: 85 HTGEGRVITVESEAFFLVNVYTPNS--QRDLVRLDYRMRWEDAFRAYLLTLNRDKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+H EID+ +P K + GFT ER++ +L+ G ID +
Sbjct: 143 GDMNVAHREIDIKNP---------------KSNIHNAGFTPEERQKMTDLLEAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ E+ D WS + R RIDYF+VS+ L+ ++ + G
Sbjct: 187 RALYPEQK-DAYTWWSYMRKARERNAGWRIDYFLVSDRLRGQVEDSTIYAD------VPG 239
Query: 340 SDHCPVSLELSEASS 354
SDHCPV L L S
Sbjct: 240 SDHCPVGLLLHTGGS 254
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T+ D D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVDADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G K +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCALKKGYSGVVTFSKT--KPLNVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I C
Sbjct: 85 HDTEGRVITCEFDKFYLVNVYTPNS--QRALARLEYRMSWEIEFRKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + K+ + WS + R RIDYF+ S LK I ++ E G
Sbjct: 187 RHFYPTKEKAYTW-WSYMQQSRERNIGWRIDYFLCSNSLKIEIKDAKI------YESILG 239
Query: 340 SDHCPVSLELS 350
SDHCPV LEL+
Sbjct: 240 SDHCPVGLELN 250
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 149/315 (47%), Gaps = 67/315 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K V+WN N L + F +F D D+ +QE ++ S + P HQ
Sbjct: 1 MKLVSWNVNGLRACMGKG---FMDFFKEADADIFCIQESKLQEGQISLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K Y+GTA+ K+ +P VS+ L
Sbjct: 53 -------------------------YWNYAVKKGYSGTAIFTKE--EPLSVSYGLGLE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI EF FY++ Y PN+ ++ R W++ +++ + K P+I+
Sbjct: 84 EHDQEGRVITLEFPDFYMVTVYTPNS--QDGLARLDYRMTWEEEFLKYLKKLEEKKPVIF 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ +P K + GFT ER++F +L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSVLLENG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D+ +S WS + + RIDYF+VS +LK+R+ + +
Sbjct: 186 FRYFY--PDLKDAYSWWSYRFHAREKNAGWRIDYFLVSPQLKERL------EDAVIYKDV 237
Query: 338 YGSDHCPVSLELSEA 352
+GSDHCPV+L L EA
Sbjct: 238 FGSDHCPVALILKEA 252
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 142/309 (45%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ ++WN N L + F + I +F+ D++ QE++ P + Q L
Sbjct: 1 MRLISWNVNGLKAIMSKG---FIDIIKSFNADILMFQEIKTDVI-----PLDLQSL---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y+I+ A K Y+GT + + P VS+ L K +
Sbjct: 49 --------------------GYEIYVFPAKRKGYSGTMTMTR--IHPISVSYGLGKE--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCG 220
Y+ +GRVI+ E+ +Y++NTY PN G E + +++ ++FV+ KP I CG
Sbjct: 85 YDSEGRVIILEYPEYYVINTYFPNAG--EGLKRLDFKLSFNRDFEKFVISLK-KPCIICG 141
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D NV+H+EID++ P K++ GFT ER+ F L G +D YR
Sbjct: 142 DFNVAHQEIDIARP---------------KDNVNHAGFTPQEREWFSHFLSLG-YVDTYR 185
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
KE +S+ + K G RIDY +VSE LK R+I ++ LE GS
Sbjct: 186 MFVKEGGHYSWWSYRFHAREKNIG--WRIDYCVVSESLKGRVIKADI------LEKVMGS 237
Query: 341 DHCPVSLEL 349
DH P+ LE+
Sbjct: 238 DHAPILLEI 246
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 142/322 (44%), Gaps = 60/322 (18%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KFV+WN +SL LL + + + + +P+VIA+QE ++PA G K H
Sbjct: 1 MKFVSWNIDSLNAALLGKSDRSVQSRQVLASIRGENPEVIAIQETKLPATGPS---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ ALS F +Y + W A YAGT L KK V+
Sbjct: 57 ----------------LTALSQF-FDDYDVHWRSSVEPARKGYAGTMCLSKKGLPLVAVT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+ EF FYL+N Y PN+G + R+ WD + ++ +
Sbjct: 100 EPRIHSPEPMDCEGRLQTLEFPDFYLVNVYTPNSG--DGLRRLSDRQLWDDAYRAYLTEL 157
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ CGD NV+H+EID++HP + GFT ER++F A+L
Sbjct: 158 DEAKPILACGDFNVAHQEIDLAHP---------------ASNHHSAGFTDEERQKFTALL 202
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D YR+LH + ++W K RIDY++VS L R+ M
Sbjct: 203 GAG-FTDTYRYLHPNQ--AGAYTWWAQRAVTSKANNSGWRIDYWLVSNRLNSRVKQSTMI 259
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DH P+ L+++
Sbjct: 260 DTGDR------RDHAPILLDIT 275
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 136/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 73/319 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSK-DAPKNHQEL 97
+KF++WN N L VK F+ TF + D +QE ++ A + D P +Q
Sbjct: 1 MKFISWNVNGLRAIVK------KGFVETFQELNADFFGIQETKLQAGQIELDLPGYYQ-- 52
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK 156
+W+ A+ K Y+GTAL K QP V + ++
Sbjct: 53 ----------------------------YWNYAERKGYSGTALFTKH--QPLNVIYGID- 81
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KP 215
A +++ +GR I E+ FY+L Y PN+G + F R W+ F+ + KP
Sbjct: 82 -APEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDF--RLGWEHAFLTFIQKLDAQKP 138
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
+I+CGDLNV+H EID+ +P K + GFT ER + A+L G
Sbjct: 139 VIFCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERAKMTALLAAG-Y 182
Query: 276 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 334
D +R+ + D+ +S WS + RIDYFI S+ L++ + ++ L
Sbjct: 183 TDTFRYFN--PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKI------L 234
Query: 335 EGFYGSDHCPVSLELSEAS 353
+ GSDHCPV L++++ +
Sbjct: 235 DQIMGSDHCPVELDVTDLT 253
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 141/313 (45%), Gaps = 67/313 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+K ++WN N L VK F + D D LQE ++ A + P HQ
Sbjct: 1 MKLISWNVNGLRAVVKKG---FIDIFNQLDADFFCLQETKLQADQIDLELPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P V + L K
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFTKH--EPDDVFYGLGKE-- 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI + +Y++ Y PN+ + E R W++ ++ Q KP+I
Sbjct: 84 EHDQEGRVITLSYPDYYVVTCYTPNS--QNELKRLDYRMTWEEDFLAYLNQLDAEKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HE ID+ + K + GFT ER +F L+ G ID
Sbjct: 142 CGDLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG-YIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + E ++ +S WS + RIDYFIVSE L++++++ + L
Sbjct: 186 FRYFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------LNEV 237
Query: 338 YGSDHCPVSLELS 350
GSDHCPV L+++
Sbjct: 238 VGSDHCPVELQIN 250
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ + A
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 87 HE--GRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P K + G GF+ ER + +L G D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KSNRGSAGFSDQERGKMTELLSSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELE 335
R L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 187 RALYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE------- 238
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 ---GSDHCPVELVL 249
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M P
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLLKSGADIFCVQETKMQ-------PDQ-------- 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ F+NY +W+ A K Y+G L K + LE+
Sbjct: 43 --------------ADFVFENYHAFWNSAQKKGYSGVLTLSKSAPLDVRYGLGLEE---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 219
++ +GRVI E+E FYL+N Y PN+ + R +W+ +EF+ S K ++ C
Sbjct: 85 HDTEGRVITCEYEYFYLVNVYTPNS--QRGLLRLPYRLQWESVFREFLQNLASHKEVLIC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+++P+ N+ + GF+ ER FG +L+ G LID Y
Sbjct: 143 GDLNVAHTEIDLTNPQ------------SNRYN---AGFSDPERNAFGQLLQLG-LIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + +K + WS + R RIDYF+ S+ L+ ++ + H + G
Sbjct: 187 RHFYPDK-TEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKDACIYAHIL------G 239
Query: 340 SDHCPVSLELS 350
SDHCPV LE+S
Sbjct: 240 SDHCPVGLEMS 250
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V +FS T + D LQE +M AG D
Sbjct: 1 MKFISWNVNGLRACVGK---DFSQSFETLNADFFCLQETKM-QAGQLDL----------- 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F Y +W+ AD K Y+GTA+ +K +P V++ + +
Sbjct: 46 -----------------QFPGYTSYWNYADKKGYSGTAIYARK--EPIAVTYGIGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E++ F+L+ Y PN ++ R W+ Q ++ + KP+I C
Sbjct: 85 HDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDEQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L G D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEERDKMTQLLSHG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R L+ E+ +S WS + + RIDYF++S+ L+ +++ I E F
Sbjct: 187 RTLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKDASIHTEIF- 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ ++L
Sbjct: 238 GSDHCPIEVDL 248
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K F +F T + DV LQE+++
Sbjct: 1 MKLISWNVNGLRAVMKKG---FMDFFTEVNADVFCLQEIKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E I M Y +W+ A K Y+GTA+ K+ +P V + L L
Sbjct: 39 ----QEGQIEM------DLPGYYTYWNYAHKKGYSGTAIFTKQ--KPVAVQYGLGLEEL- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF+++Y++ Y PN+ + R W++ I FV KP++ C
Sbjct: 86 -DTEGRIITLEFDSYYVITVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNHKPVLLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P+ NK++ GFT ER + L+ G +D +
Sbjct: 143 GDLNVAHEEIDLKNPK------------ANKKN---SGFTPEERSKMTQFLESG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E++ + WS + + RIDYF+ S+ L E+Q I + +G
Sbjct: 187 RYFYPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPELQNAKIH-KDIWG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 240 SDHCPVELQI 249
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 138/310 (44%), Gaps = 62/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N ++ F +F + D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLQKG---FEDFFKSADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + S Y+GTA+ K +PK V++ L +
Sbjct: 51 ---------------------HKYFHSAVKKGYSGTAVYTKN--EPKAVTYGLNGA---H 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+GRVI E++ FY + Y PN + E R +++ ++ ++ KP+I+CG
Sbjct: 85 TDEGRVITCEYDDFYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLCGLDKLKPVIYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 143 DLNVAHEEIDLKNP---------------KSNVGNAGFSDQERGKFTELLAAG-FADTFR 186
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ E + WS + RIDYF+VSE L D++ G L GS
Sbjct: 187 RLYPETTGVYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKV------GDSKILTDVMGS 239
Query: 341 DHCPVSLELS 350
DHCPV L+++
Sbjct: 240 DHCPVQLDIT 249
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 157/363 (43%), Gaps = 78/363 (21%)
Query: 7 PIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNF 66
P+ EC K + P K G + +K+ +K ++WN N + K F++
Sbjct: 202 PLLPECPQK--GVRPRKIPGV-------KMTKEHVMKCISWNVNGIRAVAKKG---FADQ 249
Query: 67 ITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIW 126
+ TFD DV+ALQE ++ +L D+ K Y +
Sbjct: 250 LRTFDADVVALQETKI----------QEDQLTDELKN----------------IPGYTSY 283
Query: 127 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 185
W A+ K Y+G A + P V + L +++ +GRV+ EF YL+N Y PN+
Sbjct: 284 WHCAERKGYSGVAFYTR--IPPVAVRYGLGDP--EFDCEGRVLTLEFADCYLINIYFPNS 339
Query: 186 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 244
E+ + +++ R+ + + KP+I CGD NV+H+EID+ +P
Sbjct: 340 A--EKLVRLAHKLRFNDRLLGYARELEQKKPVILCGDFNVAHKEIDLKNP---------- 387
Query: 245 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 304
K + GFT ER + + G +D +R ++ D +S+ N K G
Sbjct: 388 -----KTNVKNAGFTPEERAWMDSFVAAG-FVDTFRLFCEDPDQYTWWSYRFNARAKNVG 441
Query: 305 KRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 360
RIDYF VS DR+ I CE+ GSDHCPV+LE SEK
Sbjct: 442 --WRIDYFCVSGSAADRVRSATILCEVM----------GSDHCPVALEFVSEGVKSEKSG 489
Query: 361 KKN 363
+++
Sbjct: 490 ERS 492
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F + + D+ +QE +M
Sbjct: 1 MKLISWNVNGLRACMTKG---FMDFFNSVNADIFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G KK +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFEFKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I C
Sbjct: 85 HDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + K+ + WS + + RIDYF+ S LK + + + G
Sbjct: 187 RYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILG 239
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 240 SDHCPVGLEL 249
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 145/348 (41%), Gaps = 105/348 (30%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++F++WN N L + F + + D D++ALQE ++ +
Sbjct: 1 MRFISWNVNGLRAVLNKG---FEDIVCEIDADIVALQETKLQEGQA-------------- 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P ++ Y WS A K Y+GTA+ K+ QP +V L L
Sbjct: 44 ------------TLDLPQYREY---WSYAQKKGYSGTAVFCKE--QPLQVLHGLGSDYLD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG------- 213
E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 87 AE--GRIVALEFPGFWFVDVYTPNA--QNELARIAHRMQWDDAFRDF---CKGLEEGVLP 139
Query: 214 -------------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 242
KP++ CGD NV+H+EID+ +P
Sbjct: 140 AGVPVQRPAPGEGHVTISELPLTQPGESTDPKPVVMCGDFNVAHQEIDLKNPG------- 192
Query: 243 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 301
PN+ G+ GF+ ER +F +L G +D++R LH D+ +S WS +
Sbjct: 193 -----PNR---GKAGFSDEERGKFTDLLDAG-FVDSFRHLH--PDVTGAYSWWSYRFKAR 241
Query: 302 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RIDYF+VSE L +I + + + YGSDHCPV +EL
Sbjct: 242 QTNAGWRIDYFLVSEALAPKIESACI------YDEVYGSDHCPVGIEL 283
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK+ F + D D +QE ++ AG D
Sbjct: 1 MKLISWNVNGLRAAVKHG---FIDIFNEQDADFFCVQETKL-QAGQIDLD---------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F YQ +W+ A+ K Y+GTA+ K P V++ + +
Sbjct: 47 ------------------FPGYQQYWNYAERKGYSGTAIFTKHT--PLNVTYGI--GVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ +Y+L Y PN+G E R+ W+ ++ S KPLI+C
Sbjct: 85 FDTEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQHWEDAFLTYINSLSANKPLIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HE ID+ + + + GFT ER +F +L G D +
Sbjct: 143 GDLNVAHENIDLKNW---------------RSNHHSAGFTDEERGKFDRLLANG-YTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS + RIDYFI S++L +++ + L +G
Sbjct: 187 RHFYPDQ-TDIYSWWSYRGHARDNNSGWRIDYFITSQQLDGQLLNARI------LNDVFG 239
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 240 SDHCPVELDI 249
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 60/289 (20%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ---------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQA 192
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 193 RDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 147/312 (47%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L V N+ E F+ D D LQE +M QE + D
Sbjct: 1 MKFISWNVNGLRACVGKNFKE--EFL-ALDADFFCLQETKM------------QEGQLD- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
LS P +++Y W+ AD K Y+GTA+ K P VS + +
Sbjct: 45 -------------LSFPGYESY---WNYADKKGYSGTAIFTKHT--PLSVSRGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E FYL+ Y PN+ +++ R +W+ Q ++ KP+I C
Sbjct: 85 HDHEGRVITLEMADFYLVTVYTPNS--QDQLKRLPYRMQWETDFQSYLHSLDKHKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD+NV+HEEID+ +P K + GF+ ER++ +L G D +
Sbjct: 143 GDMNVAHEEIDLKNP---------------KSNHFNAGFSDEEREKMTTLLSNG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
RFL+ E+ +SW K R K + RIDYF++S+ L++ + ++ +
Sbjct: 187 RFLYPEQ---VTYSWWSYRF-KAREKNIGWRIDYFLISDRLRESLEEAKIHTEIL----- 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV + L
Sbjct: 238 -GSDHCPVEIIL 248
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 136/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 64/289 (22%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D D+ LQE+++ + G + K +N
Sbjct: 5 FMDFFDSVDADIFCLQEIKL-SEGQIEWNK----------------------------EN 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE FY++ Y
Sbjct: 36 YYSYWNYAEKKGYSGTAVFSKE--KPLSVKYGI--GIDEHDHEGRVITLEFENFYMVTVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ + E + R KW+ + F+ KP++ GD+NV+H+EID+ +P
Sbjct: 92 TPNS--QRELTRLEYRMKWEDDFRNFLNDLRKTKPVVVTGDMNVAHKEIDLKNP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GFT ER++ +L G ID +R+ + D++ +SW + +
Sbjct: 144 ---------KTNRKNAGFTDEERQKMTELLDSG-FIDTFRYFY--PDVEQKYSW-WSYMF 190
Query: 301 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 347
K R K RIDYF+ S+EL+DR+I+ E+ + GSDHCP+ L
Sbjct: 191 KSREKNAGWRIDYFLASKELEDRLISAEIHDKVL------GSDHCPIEL 233
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + E N D D LQE +M
Sbjct: 3 MKLISWNVNGLRACCDKGFREIFN---ELDADFFCLQETKM------------------- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ + QP V++ L +
Sbjct: 41 ---QEGQLDL-------AFEGYTSYWNYAEKKGYSGTAIFTRH--QPLSVTYGLGID--E 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E E FYL+ Y PN+ ++ R W++ ++++LQ KP++ C
Sbjct: 87 HDHEGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEEDFRKYLLQLDRQKPVLVC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID +
Sbjct: 145 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDTF 188
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ + WS + + RIDYF+ S + D+ +Q I E F G
Sbjct: 189 RHFYPTQENIYSW-WSYRFKAREKNAGWRIDYFLASSRIADK-----LQDAKIHTEIF-G 241
Query: 340 SDHCPVSLELS 350
SDHCPV + ++
Sbjct: 242 SDHCPVEVTIN 252
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 139/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L V N F + D D LQE ++ A + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVNKN---FLDVFHELDADFFCLQETKLQAGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ VS+ +
Sbjct: 53 -------------------------YWNYAERKGYSGTAIFAKE--PALNVSYGMGIDL- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GR+I E+ F+L+ Y PN+ + E R +W++ ++ + KP+I
Sbjct: 85 -HDQEGRLITLEYPEFFLVTCYTPNS--QNELKRLDYRLQWEEAFYHYLEELKKQKPVIV 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + K + GFT+ ER F +L G ID
Sbjct: 142 CGDLNVAHQEIDLKNW---------------KTNQKNAGFTMEERTAFSHLLANG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + E+ + WS + RIDYF+ S+ELK R+I ++
Sbjct: 186 FRYFYPEQTGIYSW-WSYRFNARKNNAGWRIDYFLTSDELKPRLIDAKIH------TSIM 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 GSDHCPVELDL 249
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 145/313 (46%), Gaps = 63/313 (20%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELK 98
++ +K ++WN N L ++ F +F D D+ +QE ++ QE +
Sbjct: 2 ENTMKLISWNVNGLRACIQKG---FLDFFHETDADIFCIQESKL------------QEGQ 46
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D P Y +W+ A K Y+GTA+ KK +P V++ +
Sbjct: 47 IDL-----------------PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGI--G 85
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ FY++ Y PN+ + E R +W+ + ++ + G KP+
Sbjct: 86 IEEHDKEGRVITLEYPDFYMVTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPV 143
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGDLNV+HEEID+ +P K + GF+ ER++ +L G
Sbjct: 144 ILCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLDAG-FT 187
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R+ + + + + WS + + RIDYFI S+ + D++ ++
Sbjct: 188 DTFRYFYPDTEQIYSW-WSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TD 240
Query: 337 FYGSDHCPVSLEL 349
+GSDHCPV L++
Sbjct: 241 VFGSDHCPVELDI 253
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK + ++ N I D D+ +QE +
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEI---DADIFCIQESK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + Y +W+ A K Y+GTA+ KK +P V + L K
Sbjct: 38 ---------LQEGQINLELDGYHQYWNYAIRKGYSGTAVFTKK--KPLHVRYGLGKE--D 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+ +GR+I EF F+L+N Y PN+ K + R +W+ + ++ + KP+I+C
Sbjct: 85 NQEEGRIITLEFNEFFLVNVYTPNS--KRDLTRLDYRLEWEDELYSYLRELDEEKPVIYC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ + +K + G GFT ER + +L G +D
Sbjct: 143 GDLNVAHQEIDLKN---------------HKTNHGNSGFTAQERGKMTRLLDSG-FVDTL 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R H +K+ + WS + R RIDYFIVS+ L + ++ H + + G
Sbjct: 187 RHFHPDKEGIYSW-WSYMKTIRERNIGWRIDYFIVSKRLVPYLKNSDV--HSLVM----G 239
Query: 340 SDHCPVSLELSE 351
SDHCPV+L++ +
Sbjct: 240 SDHCPVALDMDD 251
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 62/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+ V+WN N + VK EF + +PD++ +QE T
Sbjct: 1 MHIVSWNVNGVRAVVK---KEFFESVKYMNPDILCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E + +ALS P +N+ + + A+ K Y+GTA L K +E
Sbjct: 37 KAQDNE---VAKALS--PLENFSLASNSANKKGYSGTATLSSTKPLTIKADIGIEA---- 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ E+E FYL+N Y PN+G K + + R++WDK +++ KP+I C
Sbjct: 88 HDTEGRVLCTEYENFYLVNVYVPNSGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVIAC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDA 278
GD NV+H+ ID+ + +K ++ + G+T E + +G +D+
Sbjct: 146 GDFNVAHKAIDLKN---------------DKSNYNKTAGYTQTEIDGMNNFIADG-FVDS 189
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R LH ++ + WS + R RIDYF+VS+ +KD++ +
Sbjct: 190 FRMLHPDEVVYT--FWSYRFKSRERNTGWRIDYFLVSQSIKDKVKEVTV------FSDIM 241
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 242 GSDHCPIGLKI 252
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V+ F +F D D+ +QE +M
Sbjct: 1 MKCISWNVNGIRACVQKG---FMDFFQEADADIFCIQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L +P + Y W+ A+ K Y+GTA+ KK + +SF+ +
Sbjct: 39 ---QEGQL----ELETPGYFQY---WNYAERKGYSGTAVFTKK----EPLSFTCGIGIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRMEWEDAFLAYLKKLEEKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+ EEID+ +P K + GFT ER++F I G +D +
Sbjct: 143 GDLNVAAEEIDLKNP---------------KTNRKNAGFTDEEREKFRKIKASG-FVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + +++ + WS + + RIDYF VS+ LK+R+ + + G
Sbjct: 187 RYFYPDEEGIYSW-WSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHTDVM------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV L+L
Sbjct: 240 SDHCPVELDL 249
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 141/322 (43%), Gaps = 68/322 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N + R N F F+ DPD++ LQE T
Sbjct: 1 MKIYSWNVNGI--RAVVNKGAFQKFVKEHDPDILCLQE---------------------T 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK- 160
KA R + I + P + + W S Y+GTA+ K QP + + +K
Sbjct: 38 KAERGQAEIDL-----PHY--IENWNSAVKKGYSGTAIFSKT--QPLSIINGFPEDIIKK 88
Query: 161 --YEPD--------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 210
E D GRV+ AEFE FY++ Y PN+ +E R + WD +V Q
Sbjct: 89 YKVEGDVYGDPNKEGRVMAAEFEDFYIVTVYTPNSK-RELTRLTLREKHWDPAFLAYVKQ 147
Query: 211 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
KP+I+CGDLNV+H E D++ P+ + G+ GFT ER+ F
Sbjct: 148 LEKTKPVIFCGDLNVAHTEDDLARPD---------------TNHGEHGFTDEEREGFQKF 192
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
L G +D +R + + + W+ + R RIDYF+VS LK ++ + ++
Sbjct: 193 LDAG-FVDTFRMFTPKGNGHYTW-WTHWANARARNVGWRIDYFLVSHALKSKVKSAKIHA 250
Query: 330 HGIELEGFYGSDHCPVSLELSE 351
GSDHCP+S+EL +
Sbjct: 251 ------DVMGSDHCPISIELGK 266
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 139/317 (43%), Gaps = 66/317 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + ++ ++I D I LQE +K P + Q ++
Sbjct: 1 MKLVSWNVNGVRAVLQKG---LLDYIAASGADAICLQE-------TKCQPGDVQHVEWPA 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKK------CFQPKKVSFSL 154
Y W+ A + Y+GTA+ + P V+ +
Sbjct: 51 --------------------GYTAHWNAAQKRGYSGTAIFTRMGAGSSPALTPLAVTAGI 90
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 213
+ +++ +GRV+ AEF FYL+N Y PN + E R++WD ++ +
Sbjct: 91 GRD--EHDTEGRVLTAEFPDFYLVNAYVPNA--QPELARLPYRQRWDADFLAYLRGLETR 146
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
KP++ CGDLNV+HEEID++ P KE+ G PGF+ ER F L+ G
Sbjct: 147 KPVVMCGDLNVAHEEIDLARP---------------KENVGNPGFSNEERAGFREFLRAG 191
Query: 274 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333
+D +R K +S+ GK G RIDYF+ S L+ R+ ++
Sbjct: 192 -FLDTFREFEKGPGHYSWWSYRAGARGKNVG--WRIDYFLASASLRPRLKRAWIE----- 243
Query: 334 LEGFYGSDHCPVSLELS 350
GSDHCP+ LEL+
Sbjct: 244 -PAVMGSDHCPIGLELA 259
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 63/309 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F ++ D D+ +QE ++ + EL+
Sbjct: 3 KLISWNVNGLRACVGKG---FLDYFKEVDADIFCIQESKLS--------EGQIELE---- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ K+ +P V++ + ++
Sbjct: 48 -----------------LSGYHQYWNYAEKKGYSGTAMFTKE--EPLSVAYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AEF +Y++ Y PN+ K+ R W+ ++ KP+I+CG
Sbjct: 87 DHEGRVITAEFSDYYVVTCYTPNS--KDGLARLPYRMVWEDAFLRYLKGLEEKKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER +F +L G ID +R
Sbjct: 145 DLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLDAG-FIDTFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + + RIDYF VSE LKDR+++ ++ + GS
Sbjct: 189 WFYPDREEIYSW-WSYRFSARSKNAGWRIDYFCVSEALKDRLVSADIHTEVL------GS 241
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 242 DHCPVELVI 250
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 146/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ V+WN N L ++ F +F+ D+ +QE +M + A
Sbjct: 1 MRLVSWNVNGLRACMQKG---FKDFLEQSGADIFCVQETKMQPEQANFA----------- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y +W+ A K Y+G L K+ +P V + + +
Sbjct: 47 ------------------FEGYHAFWNSAVKKGYSGVLTLSKE--EPLSVRYGIGIA--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 219
++ +GRV++ E+ FYL+N Y PN + R W+K + F+ + K ++ C
Sbjct: 85 HDLEGRVVVCEYSQFYLVNVYVPNA--QRGLLRLPYRLSWEKAFRGFLSGLVAHKGVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+++P+ A + N GF+ ER F A+L+EG ID Y
Sbjct: 143 GDLNVAHTEIDLTNPQ---ANRYNA------------GFSDPERHAFSALLQEG-FIDTY 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R + E+ ++W + IG+ R + + RIDYF+ S+ L+D + + H
Sbjct: 187 RHFYPEQKE--AYTWW-SYIGQARERNVGWRIDYFLASQNLQDTLKNAHIYTH------I 237
Query: 338 YGSDHCPVSLEL 349
+GSDHCPV LEL
Sbjct: 238 FGSDHCPVGLEL 249
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202504|ref|YP_004648649.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447744|gb|AEI56359.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 199 KLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEA 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 256 GMIDSGER------RDHTPIILEI 273
>gi|423335525|ref|ZP_17313300.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
gi|337728755|emb|CCC03874.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLRKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 RELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 199 KLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEA 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 256 GMIDSGER------RDHTPIILEI 273
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLKKIAVMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK V+
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 199 KLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEA 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 256 GMIDSGER------RDHTPIILEI 273
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDNPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 133/310 (42%), Gaps = 59/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN K F +++ PD++ LQE ++ A PK+
Sbjct: 115 IKIVSWNVAGFGACTKKG---FKDYLIKEQPDIVCLQETKIAVA---KVPKSE------- 161
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P Y + + + GTALL K K +S + K+
Sbjct: 162 ---------------IPEGYTYHFNPCIEKTGHHGTALLTK----IKPISITSGIGISKH 202
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEE---NSFQRRRKWDKRIQEFVLQC-SGKPLI 217
+ +GRV+ AEFE FY++N Y PN+G +E R ++WD +++ + KP++
Sbjct: 203 DQEGRVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKEWDVDFFKYMSDLNTKKPVV 262
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
WCGDLNV+H EID+++P K + GFTI ER F L G ID
Sbjct: 263 WCGDLNVAHTEIDLANP---------------KSNSRTAGFTIEERTSFSGHLNSG-FID 306
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R + K F WS + + R+DYFIV I A ++
Sbjct: 307 THRHFNPGKTGTYTF-WSYMGGARAKNAGWRLDYFIVPATFIGSIAASFIRSK------V 359
Query: 338 YGSDHCPVSL 347
GSDHCP+ +
Sbjct: 360 QGSDHCPIGI 369
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 135/310 (43%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F+ D D+ ++QE +M + AP+ + E
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPEGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+S Y+GTA K LE+ +
Sbjct: 55 -------------------------YSAEKKGYSGTACWCKTAPLAVTTGIGLEQ----H 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRV+ E+ FYL+N Y PN+ ++ R +W+ + ++L K P+I CG
Sbjct: 86 DHEGRVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H E+D+ + AK N GFT ER + +L G D++R
Sbjct: 144 DLNVAHTEMDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FADSFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+H + + +S WS + + RIDYFIVS + DRI A E+ +G
Sbjct: 188 VVHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADRIRAAEIHNE------IFG 238
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 239 SDHCPVELQI 248
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 142/325 (43%), Gaps = 77/325 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPE--------FSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+KF++WN N L VK + F + D D LQE +M K
Sbjct: 1 MKFISWNVNGLRACVKPKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQ--------KG 52
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+L+ F YQ +W+ A+ K Y+GTA+ + P V +
Sbjct: 53 QLDLQ---------------------FDGYQSYWNYAERKGYSGTAIYTRHT--PLSVVY 89
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ-----EF 207
+ +E GRVI E FYL+ Y PN+ +E E + + R+ R+Q
Sbjct: 90 GMGIEEHGHE--GRVITMEMPEFYLVCVYTPNS--QEAETTGGKPRRLPYRMQWEDDFRA 145
Query: 208 VLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 265
LQ KP+I CGD+NV+HEEID+ +P+ LN GFT ER +
Sbjct: 146 YLQALDQKKPVIVCGDMNVAHEEIDIKNPK---TNHLNA------------GFTDEERDK 190
Query: 266 FGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 324
+L G D++R LH + + +S WS + RIDYF+ S+ L+D I
Sbjct: 191 MTTLLDSG-FTDSFRALHPD---EVTYSWWSYRFRSREHNTGWRIDYFLTSDRLRDHIT- 245
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
G I E YGSDHCP+ L+L
Sbjct: 246 ----GASIHTE-IYGSDHCPIELDL 265
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + +K +F + + D DV+ LQE T
Sbjct: 1 MKLVSWNVNGVRAAIKK---DFLQSMASLDCDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E+ ++ AL Y I+ + A K Y+GT+++ + QP V+ + +
Sbjct: 37 KAQDEQ---VIEALCE--LNGYHIFTNSAVKKGYSGTSIITR--IQPIDVTKDMGIE--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRV+ AEF YL+ Y PN+G + S+ R +WD ++ + KP++ C
Sbjct: 88 HDQEGRVLCAEFSDLYLVTVYTPNSGNDLKRLSY--RAQWDADFLSYIKKLEEKKPVVIC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLN +H +ID++ P+ PN G+T E ++ G +D +
Sbjct: 146 GDLNAAHRDIDLARPK------------PNYNK--SAGYTQQEIDGIDNLVAAG-YVDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R++H EK +SW G + R RIDYF+VS +L+ +I E+ +
Sbjct: 191 RYVHPEK---VKYSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIH------NDIH 241
Query: 339 GSDHCPVSLELS 350
GSDHCPVS++LS
Sbjct: 242 GSDHCPVSVQLS 253
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 65/311 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F + D D+ +QE ++ QE + D +
Sbjct: 5 KLISWNVNGLRACVKKG---FLEYFKEIDADIFCIQESKL------------QEGQIDLE 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +W+ A+ K Y+GTA+ K+ K +E+ +
Sbjct: 50 -----------------LDGYTSYWNYAEKKGYSGTAVFTKEEPLTVKRGIGIEE----H 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRV+ E+ FYL+N Y PN+ K+ R W+ ++++ + KP+I CG
Sbjct: 89 DNEGRVLTLEYGNFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEKNKPVIICG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P N+++ GFT ER + +L+ G ID YR
Sbjct: 147 DLNVAHKEIDLKNP------------TSNRKN---AGFTDEERSKISELLEAG-FIDTYR 190
Query: 281 FLHKEKD-MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + +K+ M +S+ N G RIDYF+VSE LKD+ ++ I +E G
Sbjct: 191 YFYPDKEGMYSWWSYRFNARANNAG--WRIDYFLVSESLKDK-----LEDAKIHME-VTG 242
Query: 340 SDHCPVSLELS 350
SDHCPV L ++
Sbjct: 243 SDHCPVELTIN 253
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F +FI +DPD++ LQE T
Sbjct: 1 MKIISWNVNGIRSILKKG---FLDFINKYDPDILCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KAS+E + Y +W+ A K Y+GT + K+ +P V +
Sbjct: 37 KASQENVQL--------NLSQYHQYWNSAQKKGYSGTCVFTKE--KPLNVENGILLDL-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIW 218
++ +GR I E+ TF+L+N Y PN+ K + + + R ++WD ++ KP+I+
Sbjct: 85 HDKEGRTITLEYPTFFLVNVYVPNS--KRDLSRLEYRCKQWDVDFLNYLKNIERKKPVIF 142
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H E D++ P+ A +N + GFT ER F I++ G +D
Sbjct: 143 CGDLNVAHTENDLAFPK----ANINNH-----------GFTAEERAGFDHIVESG-FVDI 186
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R EK WS + R RIDYF++S L+ RI + L+
Sbjct: 187 FREF--EKSSGHYTWWSQFNRCRERDIGWRIDYFLISPSLRSRIKKASI------LKDVM 238
Query: 339 GSDHCPVSLELS 350
GSDHCP++LELS
Sbjct: 239 GSDHCPITLELS 250
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + +T D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLTEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 146/314 (46%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ VTWN N L + F +F D DV+ LQE ++
Sbjct: 1 MRLVTWNVNGLRACLGKG---FLDFFQRVDADVVCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +++ AL P Y+++W+ A+ K Y+GTA+ + +P V+ + A
Sbjct: 39 ---QPDQI----ALELP---GYRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHD 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+E GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 87 HE--GRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P + + G GF+ ER + +L G D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------RSNRGNAGFSDQERGKMTELLSSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELE 335
R L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 187 RALYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE------- 238
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 239 ---GSDHCPVELVL 249
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 143/315 (45%), Gaps = 73/315 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F++ + D D + +QE +K P+ + D+
Sbjct: 1 MKLISWNVNGIRAVMKKG---FTDVLDELDADFVCIQE-------TKAHPEQIESYTDNY 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
YQ S Y+GT +L KK +P + + + ++
Sbjct: 51 P--------------------YQYINSAKRKGYSGTMVLCKK--KPLSIKYGI--NVPEF 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 221
+ +GR+I E+ FYL+ Y P +G + R +WD+ + L+ KP++ CGD
Sbjct: 87 DDEGRIITLEYPEFYLVTVYTPTSG--DGLMRLDYRLEWDEAFGNY-LKSLDKPVMACGD 143
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
NV++ EIDV +P+ G GF+ ER F L L+D YR
Sbjct: 144 FNVANNEIDVPYPDMIR---------------GTAGFSDEERDSFKENLL-SNLVDTYRV 187
Query: 282 LHKEKDMDCGFSWSGNPIGKYRGKR------MRIDYFIVSEELKDRIIACEMQGHGIELE 335
L+ E +SW YRG+ MR+DY++VS +LKD+I+ ++ L+
Sbjct: 188 LNPET---IQYSW-----WSYRGQARENNIGMRLDYWLVSNDLKDKIVDSKI------LD 233
Query: 336 GFYGSDHCPVSLELS 350
YGSDHCP+ L+++
Sbjct: 234 DIYGSDHCPIMLDIN 248
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 61/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN NSL + E I + + DV+ QE++ + P + Q L
Sbjct: 8 LKILSWNVNSLKSAIAKGLMEI---IKSEEYDVLMFQEIK-----TNQLPLDFQSL---- 55
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P++ Y I S Y+GT L + +P V++ + K ++
Sbjct: 56 -----------------PYRAY-INPSKQKRGYSGTLTLTR--IEPISVTYGIGKE--EF 93
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 221
+ +GRVI EF++ +++N Y PN G + F+ R +++ QE+V GKP + CGD
Sbjct: 94 DVEGRVISTEFKSMFVINVYFPNAGEGLKRLDFKLR--FNRAFQEYVASL-GKPSVICGD 150
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
NV+HEEID++ P K++ GFT ERK F L G +D +R
Sbjct: 151 FNVAHEEIDIARP---------------KDNVNHAGFTPEERKWFHEFLLSG-FVDTFRL 194
Query: 282 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 341
KE +S+ + K G RIDY +VS+EL+ ++ E+ LE GSD
Sbjct: 195 FVKEPGHYSWWSYRFHAREKNIG--WRIDYCVVSKELESKVKKAEI------LEKVMGSD 246
Query: 342 HCPVSLELSE 351
H PV++E+SE
Sbjct: 247 HAPVTVEISE 256
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 145/314 (46%), Gaps = 64/314 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + + F + + FD D I LQE T
Sbjct: 1 MKIISWNVNGIRAVQEKG---FRDSLQHFDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +AL +Y ++ + A+ K Y+G ALL + P +V + +
Sbjct: 37 KAQDDQ---VHKALEG--IDHYHVYCNSAERKGYSGVALLTRN--PPLRVVHDMGIA--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV++AEFE+FYLLN Y PN+G + R+ WD + ++ Q KP+I C
Sbjct: 88 HDQEGRVLVAEFESFYLLNVYVPNSG--DGLARLDYRQTWDAALLAYLQQLQNQKPVIAC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD NV+H+ ID++ P+ A N G+T E F + G ID++
Sbjct: 146 GDFNVAHQAIDIARPK----ANYN----------KSAGYTQTEIDGFSRFTEAG-FIDSF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 337
R H E +SW G R K + RIDY + S+ L RI + L
Sbjct: 191 RHFHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALLPRIQDSFI------LPEI 240
Query: 338 YGSDHCPVSLELSE 351
GSDHCPV +++SE
Sbjct: 241 MGSDHCPVGIQISE 254
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 65/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ + +E+
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I
Sbjct: 85 -HDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ + K + GFT ER++F +L G D
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ + + + + WS + RIDYF+VS++L + ++ ++ I
Sbjct: 186 FRYFYPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNESLLDAKIHTDII------ 238
Query: 339 GSDHCPVSLELS 350
GSDHCPV L+L+
Sbjct: 239 GSDHCPVELDLN 250
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 8 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 59
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K YAGTA+ K+ K ++ +
Sbjct: 60 -------------------------YWNYAERKGYAGTAVFTKE----KPITVANGFGVP 90
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY +N P +G K + F R W + + +V + KP+I
Sbjct: 91 EVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVII 148
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD++V+HE ID++ P+ ++ +PGFT ERK F +L G ID
Sbjct: 149 GGDMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDT 192
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ H ++ +S+ + R+DYF+VS L+DR+ ++ L
Sbjct: 193 FRYFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDRLTNAKI------LSNIM 245
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 246 GSDHCPIELDV 256
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKLISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Q W S Y+GTA+ + +P V+ + ++
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GF+ ER + +L+ G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +
Sbjct: 188 YLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQIF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 60/289 (20%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 5 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 35
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+N Y
Sbjct: 36 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVVTCEFESFYLVNVY 91
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 92 TPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 143
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ---------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQA 192
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 193 RDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 141/314 (44%), Gaps = 65/314 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F D D LQE ++
Sbjct: 1 MKFISWNVNGLRAIVKKG---FVEIFEELDADFFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E ++ L F Y +W+ A+ K Y+GTA+ K +P VS+ + K +
Sbjct: 39 ---QEGQIEL-------DFPGYYDYWNYAEKKGYSGTAIFTKH--KPLDVSYGIGKP--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI + +Y++ Y PN+ K E R +W+ Q ++ + S KP+I C
Sbjct: 85 HDQEGRVITLSYPNYYVVTCYTPNS--KSELKRLDYRMQWEDDFQLYLKKLDSEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HE ID+ + K + GF+ ER +F A+L G ID +
Sbjct: 143 GDLNVAHENIDLKNW---------------KTNQLSAGFSKEERMKFSALLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+ + D++ ++W + RIDYF VS L+D + + L+
Sbjct: 187 RYFY--PDLEGAYTWWNYRFNARKTNAGWRIDYFCVSTRLQDHLQEARI------LDDIV 238
Query: 339 GSDHCPVSLELSEA 352
GSDHCPV L L E
Sbjct: 239 GSDHCPVELILKET 252
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 141/320 (44%), Gaps = 59/320 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + T DPD++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVTEDPDILAIQETKLSATGPT---KKHM 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E+ LS P + +W S A YAGT L + P V+F
Sbjct: 58 EI----------------LLSYFP-NHLHVWRSSVEPARKGYAGTLFLYRNTLNPV-VTF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ +GR+I EF+ FY+ Y PN G ++ R++WD + E++
Sbjct: 100 PEIGAPDPMDAEGRIITLEFDDFYVTQVYTPNAG--DQLRRLPERQEWDIKYAEYLASLD 157
Query: 213 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GD NV+H EID+++P N+ GFT ER F A+L
Sbjct: 158 RNKPVLATGDYNVAHHEIDLANPA------------SNRR---SAGFTDEERAGFTALLA 202
Query: 272 EGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+G D +R+LH D+ ++W + K RIDY++ S + D++I EM
Sbjct: 203 KG-FTDTFRYLH--GDIPNVYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSEMIH 259
Query: 330 HGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 260 SGER------QDHTPILLEI 273
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 152/334 (45%), Gaps = 62/334 (18%)
Query: 21 PSKKDGETTETSSEENSKKDP--LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQ 78
P K E+ E K P LK +WN N + + E+ + PD+ A+Q
Sbjct: 74 PKKSKSESGEPCDGGEGDKKPWNLKLCSWNVNGVRAWLGKEGLEY---LKKEQPDIFAIQ 130
Query: 79 EVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGT 137
E + D+K E K + + Y ++ D + Y+G
Sbjct: 131 ETKC----------------SDSKLPPEMKSV----------EGYHSYFLAGDQEGYSGV 164
Query: 138 ALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 197
ALL K +P V + + K++ +GRVI AEF+ FYL+ Y PN G K + R
Sbjct: 165 ALLAK--IKPLDVKYGIGME--KHDKEGRVITAEFDKFYLVAVYVPNAGKKLVRLDY--R 218
Query: 198 RKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 256
+WDK + ++ + K ++ CGD+NV+H+EID+++P+ NK++
Sbjct: 219 MEWDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPK------------TNKKN---A 263
Query: 257 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 316
GFT ER F A+L+ G +D++R L+ +K F W+ + + R+DYFI+S+
Sbjct: 264 GFTQEERDGFTALLESG-FVDSFRHLYPDKKGAYTF-WTYMMNARAKNVGWRLDYFILSK 321
Query: 317 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
L I + GSDHCPV L L+
Sbjct: 322 ALASNISDSLIHSQ------VMGSDHCPVILLLN 349
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 61/308 (19%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L + N F D D+ LQE ++ QE + D
Sbjct: 5 KLISWNVNGLRAVMGKN---FMEDFKRLDADMFCLQETKL------------QEGQID-- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
L P + +Q W Y+GTA+ K+ +P V + + +++
Sbjct: 48 ------------LDLPGY--FQYWNYAVKKGYSGTAIFTKE--EPLSVQYGI--GVEEHD 89
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGD 221
+GRVI E+ FYL+ Y PN+ + E R K++ ++L K P+I+CGD
Sbjct: 90 QEGRVITLEYPEFYLITVYVPNS--QGELKRLPYRMKFEDAFLNYILTLEKKKPVIYCGD 147
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+HEEID+ +P+ + +N GF+ ER +F +L G L D++R
Sbjct: 148 LNVAHEEIDLKNPD---SNHMNA------------GFSDEERAKFSRVLDSGYL-DSFRH 191
Query: 282 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 341
+ K+ + + WS + R RIDYF+VS++L+ ++++ + + GSD
Sbjct: 192 FYPNKEEEYSW-WSYRTKARDRNVGWRIDYFVVSKQLEKKLLSASIH------QEVMGSD 244
Query: 342 HCPVSLEL 349
HCPV + L
Sbjct: 245 HCPVEITL 252
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 66/311 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ A+Q+ R+ P D P +Q
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEPNEVQIDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A K YAGTA+ K+ K ++ +
Sbjct: 53 -------------------------YWNYAKRKGYAGTAVFTKE----KPITVANGFGVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY ++ P +G K + F R W + + +V + KP+I
Sbjct: 84 EVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD++V+H++ID++ P+ ++ GFT ERK F +L G ID
Sbjct: 142 GGDMSVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ H ++ +S+ + K G R+DYF+VS L+D++I ++ L
Sbjct: 186 FRYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIM 237
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L+L
Sbjct: 238 GSDHCPIELDL 248
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+++ +GRVI E+E FYL++ Y PN+ K + F R KW+ Q ++ + KP+I
Sbjct: 14 EFDHEGRVITLEYEQFYLVDCYTPNSQQKLKRLDF--RLKWELAFQTYLKKLDQTKPVIL 71
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H++ID+ + K + GF+ ER+ ++L +G ID+
Sbjct: 72 CGDLNVAHQKIDLKNW---------------KTNRHNAGFSDQERQAMTSLLDKG-FIDS 115
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+RFLH E + WS + RIDYFIVS+ LK+RI+ ++ L Y
Sbjct: 116 FRFLHPETTGIYSW-WSYRFHARENNAGWRIDYFIVSDRLKNRILKADI------LTNIY 168
Query: 339 GSDHCPVSLELSE 351
GSDHCPV LEL E
Sbjct: 169 GSDHCPVELELKE 181
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 71/314 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQELK 98
+K ++WN N L VK+ F+ TF D D +QE ++ A +++
Sbjct: 12 VKLISWNVNGLRAAVKHG------FVMTFNELDADFFCVQETKLQAG----------QIE 55
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKT 157
D F Y +W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 56 LD-------------------FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--G 92
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPL
Sbjct: 93 VPEFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPL 150
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I+CGDLNV+HE ID+ + + + GFT ER +F +L G
Sbjct: 151 IFCGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAG-YT 194
Query: 277 DAYR-FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 195 DTFRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE----- 247
Query: 336 GFYGSDHCPVSLEL 349
+GSDHCPV L++
Sbjct: 248 -IFGSDHCPVELDI 260
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 142/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + + RIDYFI S+ + D+ +Q I +
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDK-----LQKAAIHTDVL 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV +++
Sbjct: 239 -GSDHCPVEVDI 249
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSLLLRVKNN------WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +S+ + E I PDVIA+QE ++ SK+ P
Sbjct: 1 MKFISWNIDSINAALTGTSVRAGETREVLQKIAAMKPDVIAIQETKL----SKNGPT--- 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ L +++ L F NY++ W A YAGT L ++PK ++
Sbjct: 54 ----------KKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF FY+ Y PN+G N +R R+ WD ++++
Sbjct: 99 YPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDYL 153
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 154 HELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHFS 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 199 KLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEA 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 256 GMIDSGER------RDHTPIILEI 273
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 65/311 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V + E+ D D+ +QE ++ QE + D K
Sbjct: 3 KLISWNVNGLRACVNKGFLEY---FKEADADIFCIQESKL------------QEGQIDLK 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y+ +W+ A+ K Y+GTA+ K+ +P V + + ++
Sbjct: 48 -----------------LEGYKDYWNYAEKKGYSGTAVFTKE--EPISVKNGIGIS--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF+ FYL+N Y PN+ K+ R W+ ++++ + KP+I CG
Sbjct: 87 DTEGRVITLEFKEFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEEKKPVIICG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HE+ID+ +P K + GFT ER + +L+ G ID YR
Sbjct: 145 DLNVAHEDIDLKNP---------------KANRKNAGFTDEERNKISELLEAG-FIDTYR 188
Query: 281 FLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + + + +S+ N G G RIDYF+ SE LKD+++ ++ + + G
Sbjct: 189 YFYPNTEGVYSWWSYRFNARGNNAG--WRIDYFLASESLKDKLVDAKIHMNVM------G 240
Query: 340 SDHCPVSLELS 350
SDHCPV + ++
Sbjct: 241 SDHCPVEVMVN 251
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDADFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ K P++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + + RIDYFI S+ + D++ + +
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVL----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV +++
Sbjct: 239 -GSDHCPVEVDI 249
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 143/318 (44%), Gaps = 67/318 (21%)
Query: 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQ 95
S+ K ++WN N L +K P F+ T + DV ALQE ++ + D P Q
Sbjct: 2 SQTQEYKLISWNVNGLRAVLKKE-PSFTEIFETINADVFALQETKLQEGQVELDLPGYVQ 60
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
W+ AD K Y+GTA+ ++ P +V +
Sbjct: 61 T------------------------------WNYADRKGYSGTAVFSRET--PLQV---I 85
Query: 155 EKTALKYEPD-GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 212
+ D GRV EFE F+ + Y PN+ K++ R +WD+ ++F+ + S
Sbjct: 86 RQIGCPVADDEGRVCALEFEKFWFVCVYTPNS--KDQLARLDERLEWDQHYRDFLAELSK 143
Query: 213 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP+I CGD NV+H EID+ +P N+++ GF+ ER+ F +L
Sbjct: 144 QKPVITCGDFNVAHNEIDLKNP------------SSNRQN---AGFSDEERESFTKLLDA 188
Query: 273 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
G D +R+ H D+ +S WS + RIDYF+VS+ + +++ + +
Sbjct: 189 G-FTDTFRYRH--PDITGAYSWWSYRFNARKNNAGWRIDYFLVSDRIAEQVKSASI---- 241
Query: 332 IELEGFYGSDHCPVSLEL 349
L YGSDHCP+ L +
Sbjct: 242 --LSEIYGSDHCPIELSI 257
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ E++ +L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 39 ---QPEQI----SLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + WS + R RIDYFI S+ L D+I ++ + +GS
Sbjct: 188 HLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGS 240
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L F T D D LQE +M
Sbjct: 1 MKLISWNVNGLRACCDKG---FREAFQTLDADFFCLQETKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L F+ Y +W+ A+ K Y+GTA+ +P V++ L
Sbjct: 39 ---QEGQLDL-------SFEGYTSYWNYAEKKGYSGTAIFTH--LKPLNVTYGLGIDV-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI E + FYL+ Y PN+ ++ R W+ + ++L+ K P++ C
Sbjct: 85 HDHEGRVITLEMDNFYLVTVYTPNS--QDGLKRLDYRMTWEDDFRNYLLELDKKKPVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQILLDAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E+ + WS + + RIDYF+ S L D++ + ++ +G
Sbjct: 187 RYFYPEQTGIYSW-WSYRFKAREKNAGWRIDYFLASRRLADKLESAKIHTE------IFG 239
Query: 340 SDHCPVSLELS 350
SDHCPV + L+
Sbjct: 240 SDHCPVEVTLN 250
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 36/255 (14%)
Query: 99 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK 156
D+TK + ++ + ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 76 DETKCAEKDLPAEITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGK 129
Query: 157 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 215
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KP
Sbjct: 130 E--EHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKP 185
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
L+ CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G
Sbjct: 186 LVLCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-F 229
Query: 276 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
+D++R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 230 VDSFRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM--- 285
Query: 336 GFYGSDHCPVSLELS 350
GSDHCP++L L+
Sbjct: 286 ---GSDHCPITLHLA 297
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 150/325 (46%), Gaps = 60/325 (18%)
Query: 29 TETSSEENSKKDPLKFVTWNAN--SLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
T S E N + KF++WN N S + R + N+ + + +P + LQE +
Sbjct: 65 TNNSYELNKQ---FKFISWNVNGISAVFRKEPNYLKM--LVEKEEPTCLCLQETK----- 114
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNY--QIWWSLADSKYAGTALLVKKC 144
L +D K S ++ FKNY S A Y+GTA V K
Sbjct: 115 ----------LSEDVKLSE---------MAQYKFKNYIGHFNTSRARKGYSGTACFVLK- 154
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
PK ++ K++ +GR I E+E FYL+NTY PN+G + + R ++WD +
Sbjct: 155 HGPKVLNVKFGIGKDKHDLEGRTITVEYEDFYLVNTYCPNSGQNLDRLEY-RTKEWDVDL 213
Query: 205 QEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263
++ + KP+IW GDLNV+ E+D+ P + + PGFT+ ER
Sbjct: 214 LKYFEKLEKKKPIIWGGDLNVAISEMDIHDPLTLSKS---------------PGFTLEER 258
Query: 264 KRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 322
+ + K ID++R+ + K + + + + + K RIDYF+ S LKD+I
Sbjct: 259 QSSPLVTKASPPFIDSFRYKNPYKKQYTYYGYINDM--RLQKKGWRIDYFVCSNSLKDKI 316
Query: 323 IACEMQGHGIELEGFYGSDHCPVSL 347
+ + LE ++GSDH P+ L
Sbjct: 317 VNSYI------LEEYFGSDHLPIGL 335
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 139/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 144/312 (46%), Gaps = 63/312 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K +WN L V EF I PD++ +QE + ++ D+
Sbjct: 354 FKISSWNVAGLRSWVGKGGLEF---IEHEKPDILCVQETKC----------TEDQMPDEA 400
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ K Y +W +AG A+ KK P V++ L +
Sbjct: 401 RH----------------IKGYHPYWLCKPGGHAGVAIYSKKM--PFHVAYGLGDE--EQ 440
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ DGR++ AE+E FYL+ Y PN G K + +R +W+++ +++ K P+I CG
Sbjct: 441 DQDGRLLTAEYEKFYLVCVYVPNAGRKL--VTLPKRLRWNEKFHQYLRDLDAKKPVILCG 498
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NV+HEEID+++P+ NK++ GFT ER+ +L G +D +R
Sbjct: 499 DMNVAHEEIDLANPKT------------NKKNA---GFTPEEREGMTELLSYG-FVDTFR 542
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ ++ F W+ +G R K + R+DYFI SE L ++ ++ +
Sbjct: 543 KLYPDRTGAYTF-WTY--MGGARAKNVGWRLDYFITSERLAGKVTDNVIRSQ------VF 593
Query: 339 GSDHCPVSLELS 350
GSDHCPV+L L+
Sbjct: 594 GSDHCPVTLFLN 605
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 136/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 137/310 (44%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L +G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQL-DGGFIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGP-------- 52
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
TK E L F NY +W S A YAGT L K+ P V+
Sbjct: 53 -----TKKHLESILNY--------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R++WD + E++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFDDFFVTQVYTPNAG--DGLRRLADRQEWDIKYAEYLAQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPA------------SNRR---SPGFTDEERAGFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R LH D+ ++W + K RIDY++ S + D+++ EM
Sbjct: 202 EKG-FTDTFRHLH--GDIPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRVADKVLKSEML 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPILLEI 273
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F + D D+ LQE ++ + HQ
Sbjct: 1 MKVISWNVNGLRAAVTKG---FIDSFNELDADIFCLQETKL---------QPHQ------ 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Q W S Y+GTA+ + +P V+ + ++
Sbjct: 43 -----------IELELPGYE--QFWNSAVKKGYSGTAVFTR--IKPIAVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GF+ ER + +L+ G D +R
Sbjct: 144 DLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ + +
Sbjct: 188 YLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQIF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 139/314 (44%), Gaps = 64/314 (20%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQEL 97
K+ +K ++WN N L + + +F+ D D+ ++QE +M + AP+ + E
Sbjct: 10 KEQDMKLISWNVNGLRACLTH---DFAASFAALDADIFSVQETKMQPGQADFAPEGYTEY 66
Query: 98 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+S Y+GTA K P V+ + +
Sbjct: 67 T----------------------------YSAEKKGYSGTACWCKTA--PLAVTTGIGRE 96
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PL 216
+++ +GRV+ E+ FYL+N Y PN+ ++ R W+ + ++L+ K P+
Sbjct: 97 --EHDHEGRVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPV 152
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGDLNV+H EID+ + AK N GFT ER + +L G
Sbjct: 153 ILCGDLNVAHTEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FT 196
Query: 277 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R +H + + +S WS + + RIDYFIVS + D++ A E+
Sbjct: 197 DTFRAVHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKVTAAEIHNE----- 248
Query: 336 GFYGSDHCPVSLEL 349
+GSDHCPV L +
Sbjct: 249 -VFGSDHCPVELVI 261
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 143/311 (45%), Gaps = 63/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + F +F T+ + DV +QE +M
Sbjct: 1 MKLISWNVNGLRACMNKG---FMDFFTSVNADVFCIQESKM------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
++E+ ++ FK Y +W+ A K Y+G K +P VS+ + +
Sbjct: 39 ---QQEQ-------NTFDFKGYFDFWNCAIKKGYSGVVTFSKT--EPLNVSYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRV+ EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I C
Sbjct: 85 HDTEGRVVTCEFDKFYLVNVYTPNS--QRALARLEYRMSWEVEFRKFLKNLELQKPVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER++F +L G ID +
Sbjct: 143 GDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + K+ + WS + + RIDYF+ S+ LK + ++ E G
Sbjct: 187 RHFYPTKEKAYTW-WSYMQQARDKNIGWRIDYFLCSKSLKTELKDAKI------YENILG 239
Query: 340 SDHCPVSLELS 350
SDHCPV LEL+
Sbjct: 240 SDHCPVGLELA 250
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 52/247 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K V+WN N + +KNN E +I + D+ +QE + P
Sbjct: 65 FKIVSWNVNGIRAVIKNNGME---YIKKENADIFCIQETKCP------------------ 103
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
L + S +YQ +WS AD + YAGTAL K P KV++ + K
Sbjct: 104 ---------LHKIPSEAKVPSYQSFWSSADKAGYAGTALFSK--ISPIKVTYGIGKKM-- 150
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AE++ FYL+ Y PN+G + R ++WD E++ + S KP+I C
Sbjct: 151 HDDEGRVITAEYDKFYLVTAYVPNSGQGLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVC 209
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID++ PE + GFT ER F +L LID Y
Sbjct: 210 GDLNVAHEEIDLARPE---------------TNHKTAGFTDQERSGFTKLLSSANLIDTY 254
Query: 280 RFLHKEK 286
R + ++
Sbjct: 255 RHFYPDR 261
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 143/310 (46%), Gaps = 65/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K TWN SL R K+N F+ +I + PD+I +QE + H ++K+
Sbjct: 9 IKIATWNVASLRARWKDN---FTFYINSSKPDIICIQETKF-----------HVDMKES- 53
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ +K Y ++ + YAGT + K ++P V S
Sbjct: 54 ----------LKNFKLDGYKGY--FFHAKKAGYAGTCIYTK--YKPVSVKRSFA------ 93
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIWC 219
+PDGR I EF+ FYL+NTY N G E+ + ++W+ +I+ +++ KP+IW
Sbjct: 94 DPDGRCITMEFKNFYLINTYVVNAG--EDLGRLDYKIKEWNPKIRNHIMELEKKKPVIWT 151
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ E K+ GY T ERK F L EG ID Y
Sbjct: 152 GDLNVAHKPIDIWQAE--GHEKIAGY-------------TDEERKWFDDFLNEGH-IDIY 195
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR--IIACEMQGHGIELEGF 337
R LH E F++ G K +G RIDYFI + ++ I C ++G
Sbjct: 196 RELHPESHEFTFFNYRGQAKSKNQG--WRIDYFITGKGNIEKLGISDCVIEG------TI 247
Query: 338 YGSDHCPVSL 347
GSDH PV L
Sbjct: 248 DGSDHQPVIL 257
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 64/310 (20%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GV 85
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I
Sbjct: 86 AEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVI 143
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+HE ID+ + +K + GF+ ER +F +L G D
Sbjct: 144 FCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLAAG-FTD 187
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
++R+ + ++ +S+ N + RIDYF+ +++L+ ++ + L
Sbjct: 188 SFRYFYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDV 239
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 240 LGSDHCPVML 249
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 64/310 (20%)
Query: 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKD 99
+ LKF++WN N L VK N F F D D +QE ++ A +
Sbjct: 2 NALKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE----------- 47
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
L+ P + Y W+ A+ K Y+GTA+ K +P V++ +
Sbjct: 48 ---------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GV 85
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLI 217
+++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I
Sbjct: 86 AEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVI 143
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+HE ID+ + +K + GF+ ER +F +L G D
Sbjct: 144 FCGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLSAG-FTD 187
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
++R+ + ++ +S+ N + RIDYF+ +++L+ ++ + L
Sbjct: 188 SFRYFYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDV 239
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 240 LGSDHCPVML 249
>gi|400289764|ref|ZP_10791791.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
gi|399920555|gb|EJN93372.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD------PDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ D PD+IA+QE ++PA G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVIDTLAEKKPDIIAIQETKLPAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F +Y I W A YAGT + K +P V+
Sbjct: 58 EILKNY------------------FADYDIAWRSSVEPARKSYAGTIFIYKSELKPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD++ ++
Sbjct: 99 YPNIGAPATMDAEGRIITLEFDHFFVTQVYTPNAG--DGLRRLEERQIWDEKYAAYLADL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLAAGDYNVAHQEIDLAHPA------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R++H D+ +SW + K RIDY++ S + D+++ EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVLKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPILLEI 273
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVRLDADIIAIQETKLSANGPT---KKH- 56
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L ++ L F NYQ+ W A YAGT L K P ++
Sbjct: 57 -------------LTILEEL----FPNYQLTWRSSIDPARKGYAGTMFLYKNNLTPI-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WD++ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTTL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DEKKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|417002268|ref|ZP_11941657.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 144/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N S I D DVIALQE ++P +G K H+
Sbjct: 1 MKFISWNIDSLNAALTSDSNRAVMSREVLETIKREDADVIALQETKLPKSGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E KL + F +Y W+ A YAGT L KK + +
Sbjct: 58 E-----------KL-------AEFFPDYDYVWTCSCEGARKSYAGTMTLYKKGLDVTE-T 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
F + +GR++ EF+ FY Y PN G N R R+ WD++ +++
Sbjct: 99 FPKIDAPGTMDFEGRIVTLEFDDFYFTQVYTPNAG-----NGLVRLADRQIWDEKYADYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP+I GD NV+H ID++HPE N ++ PGFT ER+ F
Sbjct: 154 EGLDKIKPVIASGDFNVAHTPIDLAHPE-------NNHI--------SPGFTDEEREGFT 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D +R H KD++ ++W + K RIDYF+VS+ L +R+ +
Sbjct: 199 RLLARG-FTDTFR--HLNKDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMERVKSS 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
+ G DH P+ LE+
Sbjct: 256 TIINSGDR------QDHTPIMLEI 273
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + V F +F + D+ ++QE ++
Sbjct: 1 MKLISWNVNGIRACVNKG---FLDFFNKENADIFSIQETKV------------------- 38
Query: 102 KASREEKLILMRALSSPPFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+EE++ PF+ Y +W+ A K Y+GTA+ KK +P + + +
Sbjct: 39 ---QEEQI---------PFQLEGYYQYWNFAQKKGYSGTAIFSKK--EPLNIRYGI--GI 82
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
+++ +GRVI EFE FY++ Y PN+ + E + R KW+ ++ KP+I
Sbjct: 83 EEHDQEGRVITLEFEKFYMVTVYTPNS--QRELARLEYRMKWEDDFLHYLRDLEQLKPVI 140
Query: 218 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 277
+CGDLNV+H+EID+ +P+ NK + GF+ ER + ++ +G D
Sbjct: 141 FCGDLNVAHKEIDLKNPK------------ANKNN---AGFSAEERGKLTRVMDQG-FTD 184
Query: 278 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + E+ + WS + RIDYF VS ELKD++ +
Sbjct: 185 TFRYFYPEQ-TEAYTWWSYMFNARANNAGWRIDYFCVSAELKDQL------KDAVIYNDV 237
Query: 338 YGSDHCPVSLEL 349
GSDHCP+ LE+
Sbjct: 238 LGSDHCPIGLEI 249
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 136/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 39 MKLISWNVNGLRAVLK---KDFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 90
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 91 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 121
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 122 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 179
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 180 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 223
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 224 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 274
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 275 MGSDHCPVEL 284
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + + WS + R RIDYFI S+ L D+I ++ + +GS
Sbjct: 188 HLYPDAIEEYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGS 240
Query: 341 DHCPVSLEL 349
DHCPV L++
Sbjct: 241 DHCPVELDI 249
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 138/311 (44%), Gaps = 70/311 (22%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPD---VIALQEVRMPAAGSKDAPKNHQELKD 99
KF++WN N L VKN ++ F D IALQE K
Sbjct: 4 KFLSWNVNGLRAAVKNG------AVSVFKQDDYFGIALQET-----------------KA 40
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTAL 159
D+ + EE L L + P K Y+GT LV++ +P VS+ E
Sbjct: 41 DSTSVPEEMYHLGYYLYNNPAKK---------KGYSGTMSLVRE--KPIDVSYGFEN--- 86
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+GR++ EF+ FY +N Y PN + + +D++ E+ + KPLI
Sbjct: 87 ---EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGD NV+HEEID++ P K++ GFT ER L G +D
Sbjct: 142 CGDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
YR KE +S+ N K G RIDYF+VS++++DR+ E+ LE
Sbjct: 186 YRIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVT 237
Query: 339 GSDHCPVSLEL 349
GSDH PV+LE+
Sbjct: 238 GSDHAPVTLEV 248
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 67/311 (21%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + ++ F + D D+ +QE ++
Sbjct: 3 KMISWNVNGIRACIEKG---FLDVFKNMDADIFCIQESKVS------------------- 40
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
E +L L P + +Y W+ A K Y+G A+ K +P KV++ + ++
Sbjct: 41 ---EGQL----ELDLPGYYDY---WNYAQKKGYSGVAMFTKD--KPVKVTYGM--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I AEFE +Y+L Y PN+ + + + R W+ +++ S KPLI+CG
Sbjct: 87 DNEGRIITAEFENYYMLTCYTPNS--QRQLTRLEYRMDWEDAFLDYIKNLSQKKPLIYCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+ +ID+ +P K + GFT ER++ A+++ D++R
Sbjct: 145 DLNVAFADIDLKNP---------------KTNRKNAGFTDEERQKM-AVVQASGFTDSFR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+L+ D++ +SW + +G R K + RIDYF+VS+ LK+ I +
Sbjct: 189 YLY--PDLEGVYSW-WSYMGGARSKNIGWRIDYFMVSDSLKNCIKQARIH------TDIM 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 240 GSDHCPVELEI 250
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 60/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN L +K + E+ + DPD+I LQE++ +++ D+
Sbjct: 64 LKIISWNVAGLRAWLKKDVVEY---LKKEDPDIICLQEIKC----------TEKQMPDEA 110
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y+I+ + D + Y+G AL K +P V E L
Sbjct: 111 K-----------------LPGYKIYINSGDKAGYSGVALYSKT--KPISVRMGKEIKDLD 151
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GRVI AE+E F+L++TY PN G + + +R KWD+ ++++ + + KP++
Sbjct: 152 -DNEGRVIEAEYEQFFLVSTYIPNAGAGLK--TLPKRMKWDEAFRKYLKELDTKKPVVLT 208
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+++P K + GFT ER +L++G +D +
Sbjct: 209 GDLNVAHEEIDIANP---------------KTNTKSAGFTKEERDNMSLLLEQG-FVDTF 252
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R L+ EK F W+ + + R+DYFI S+ D + ++ + G
Sbjct: 253 RTLNPEKTGAYTF-WTYFHNSRAKNVGWRLDYFITSKRFMDNVCDSTIRNEVL------G 305
Query: 340 SDHCPVSLELS 350
SDHCP+ ++
Sbjct: 306 SDHCPIVFYIN 316
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQELKDD 100
+KF++WN N L V+ F +F + D D +QE ++ A D P HQ
Sbjct: 1 MKFISWNVNGLRACVQKG---FLDFFNSIDVDFFCIQESKLQAGQIDLDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K +P VS+ +
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIE 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI E++ FYL+ Y PN+ + E R +W+ +E++ KP++
Sbjct: 84 EHDKEGRVITLEYDNFYLVTCYTPNS--QNELKRLPYRMQWEDDFREYLKALDAQKPVVL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + + RIDYFI S+ + D++ + +
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVL----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV +++
Sbjct: 239 -GSDHCPVEVDI 249
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D DV +QE +M P + P +Q +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGYYQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y+GT + K+ +P V++ L +
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--KPLSVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K ++ C
Sbjct: 85 HDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E++ + WS + + RIDYF+VSE+ K+ I + YG
Sbjct: 187 RYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------TDIYG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSLE
Sbjct: 240 SDHCPVSLEF 249
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 154/356 (43%), Gaps = 89/356 (25%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K V+WN ++ +K N + PD+I QE ++ + H E ++
Sbjct: 132 KIVSWNVTTIRSLMKKNPELLKKLMEQEQPDLICFQETKLKQ-------EEHDEYEE--- 181
Query: 103 ASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKK----------------- 143
M P + Y+ +S L++ YAGT +LV+
Sbjct: 182 ---------MLKSQFPGDQGYEAHFSSSLSNKSYAGTLVLVRSSKDKATAQKQTKMDSFF 232
Query: 144 --------------CFQPKKVSFSLE-------KTALKYEPDGRVILAEFETFYLLNTYA 182
P KV+F L + A + +GR I EFE+F+++ TY
Sbjct: 233 KGKDSKSAKKDEETACPPLKVTFGLSTLSKDDGEIAAEVIQEGRTITVEFESFFVVATYV 292
Query: 183 PNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+G K + F R + WD+++ E++ L+ SGKP+IWCGDLNV+H + D+ +
Sbjct: 293 PNSGEKLQRLEF-RTKLWDRKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLV 351
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 299
K G P ER F IL+EG +D +R LH E D FS WS
Sbjct: 352 KSAGTTPE-------------ERDSFSKILEEG-YVDCFRHLHGE-DAKGWFSYWSVRAG 396
Query: 300 GKYRGKRMRIDYFIVSEEL--KD---RIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+ + +R+DYF+ S+ L +D R++ ++ + F DH +SL L+
Sbjct: 397 NRPWNRGLRLDYFVASKSLCSQDSLPRVVDADIH------DEFVAIDHAAISLTLA 446
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 135/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 120 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLV 88
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 237
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 189
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 190 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 32/232 (13%)
Query: 121 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 178
K+Y ++ + SK Y+G A+ K K +S + K++ +GR + AEFE FYL+
Sbjct: 141 KHYFLYLNFCKSKAGYSGVAIASK----VKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLV 196
Query: 179 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 237
+ Y PN+G K E + R ++WD Q ++ KP I CGDLNV+H EID+S+P
Sbjct: 197 SCYVPNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNP--- 252
Query: 238 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 297
NK+ GFT+ ER +F L++G +D++R LH ++ FS N
Sbjct: 253 ---------AGNKK---TAGFTLQERDQFSNYLQKG-WVDSFRHLHPKEVKYSFFSARSN 299
Query: 298 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ +G R+DYFI+++E D I ++ + +E GSDH P+ E+
Sbjct: 300 SRSQNKG--WRLDYFIINKEASDAITVSDIN---LTVE---GSDHVPIECEV 343
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 60/310 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V++N N + +K +F + DPDV+ +QE T
Sbjct: 1 MKIVSFNVNGIRAIMKK---DFHESLAMMDPDVLCIQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + AL P Y I+ + A K Y+GTA+L K+ K +S S + +
Sbjct: 37 KAQDDQ---VAEALK--PINGYHIFSNSAVKKGYSGTAILTKE----KPISVSYDINIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI AEF ++++ Y PN+G + ++ R+ WDK ++ KP+I C
Sbjct: 88 HDTEGRVICAEFSAYFVVTVYVPNSGSALKRLTY--RQTWDKAFLAYLKALEKKKPVIVC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H +ID+++P+ PN G+ E A L G +D +
Sbjct: 146 GDLNVAHRDIDLANPK------------PNYNK--SAGYMQEEIDGIDAYLSAG-FVDTF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R H + D WS + R RIDYF++S +L ++ ++ + G
Sbjct: 191 R--HFQPDTQKYSWWSYRAGARVRNVGWRIDYFLISPDLLKKVKKADIYNEVM------G 242
Query: 340 SDHCPVSLEL 349
SDHCPV+LEL
Sbjct: 243 SDHCPVALEL 252
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 142/325 (43%), Gaps = 65/325 (20%)
Query: 7 PIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWP-EFSN 65
PI E AK A PS +D S ++ K V WN N L +K +
Sbjct: 82 PISAELQAKIDAF-PSFED------VSRRSADDIDTKIVAWNVNGLRAVLKRDESVHLRA 134
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ DPD+ L E TK R+E L + P +Q
Sbjct: 135 YVAQEDPDIFCLSE---------------------TKICRDE---LQKLEDFLPQYEHQY 170
Query: 126 WWSLADSKYAGTALLVKKCFQPKKV----------SFSLEKTA-LKYEPDGRVILAEFET 174
W YA TA+ K +P V S + K+A + +GR + EF
Sbjct: 171 WSCAIKKGYASTAIFTKT--KPLSVKDEIVVGDHDSKGVAKSANGGKDQEGRFLALEFPK 228
Query: 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRI-QEFVLQCSGKPLIWCGDLNVSHEEIDVSH 233
F+L++TY PN G K E F R +WDK + +E KP+IWCGDLNV+H+EID+ +
Sbjct: 229 FWLVHTYVPNAGGKLERLDF-RTTQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIHN 287
Query: 234 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 293
P K + GFT ER+ FG IL++G +D +R LH + F
Sbjct: 288 P---------------KGNHKSAGFTDEERESFGEILEDG-FVDTFRHLHPDTVEYSYFG 331
Query: 294 WSGNPIGKYRGKRMRIDYFIVSEEL 318
+ N K +G R+DYF+VSE+L
Sbjct: 332 YRHNMRAKNKG--WRLDYFVVSEKL 354
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 139/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEKADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFANLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 65/311 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L VK F ++ D D+ +QE ++ QE + D +
Sbjct: 5 KLISWNVNGLRACVKKG---FLDYFNEMDADIFCVQETKL------------QEGQIDLE 49
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ K +S + ++
Sbjct: 50 -----------------LEGYYDYWNYAEKKGYSGTAVFTKE----KPISVKMGLGIEEH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI E++ F+L+N Y PN+ +++ + R W+ + ++ KP+I CG
Sbjct: 89 DNEGRVITLEYDKFFLVNVYTPNS--QQKLARLEYRMSWEDVFRNYLKDLEKNKPVILCG 146
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P N+++ GF+ ER + +L G D +R
Sbjct: 147 DLNVAHKEIDLKNP------------SSNRKN---AGFSDEERSKMSELLNSG-FTDTFR 190
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + D++ +S WS + RIDYFIVS+ L D++ ++ IE G
Sbjct: 191 YFY--PDIEGVYSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIHT-SIE-----G 242
Query: 340 SDHCPVSLELS 350
SDHCPV LE++
Sbjct: 243 SDHCPVELEIN 253
>gi|300813916|ref|ZP_07094220.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511979|gb|EFK39175.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 144/323 (44%), Gaps = 65/323 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L +N + + + DPD+ A+QE ++P G K H+
Sbjct: 1 MKFISWNIDSLNAALTSSSNRAILTRAVLSSIRDEDPDLFAVQETKLPPTG---LSKKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F++Y + A YAGT + KK + K
Sbjct: 58 EILE------------------KEFQDYSYVYVTSKEEARKSYAGTMIFYKKDLECKATY 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR++ EF+ FY Y PN G + R+ WDK+ E+ +
Sbjct: 100 PEIGAPG-SMDMEGRILTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQEL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KPL+ CGD NV+H+EID+++P F+A GFT ER F
Sbjct: 157 DKNKPLVLCGDFNVAHKEIDLANPNNNHFSA-----------------GFTDEERMGFTN 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L +G +D +R ++ D++ ++W I K RIDYF+VS+ +KD++
Sbjct: 200 LL-DGGFVDTFRLIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDKVKKSH 256
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 257 MMDSGQR------QDHTPIILEI 273
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 70/325 (21%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+KF++WN +S+ +R + W N I T PDV A+QE ++ + G +K
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F Y ++ S A S Y+GT +L K +P +V
Sbjct: 60 IAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK--VEPTQVE 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF TF+L Y PN+G +S R R +WD + +E++
Sbjct: 96 YPTIGAPGSMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYI 150
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ KP+I+ GD+NV+H+EID+ +P+ PN+ GFT ER++F
Sbjct: 151 KTLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFS 195
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
A+L G D +R L+ D ++W + K RIDY++VS+ + + +
Sbjct: 196 ALLDAG-FTDTFRSLN--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTES 252
Query: 326 EMQGHGIELEGFYGSDHCPVSLELS 350
+ G DH P+ LE++
Sbjct: 253 CVIDTGAR------QDHAPILLEIN 271
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 71/332 (21%)
Query: 36 NSKKDP-LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG- 86
NS+ D LKF++WN +S+ +R + W N I T PDV A+QE ++ + G
Sbjct: 7 NSQGDENLKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGL 65
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKC 144
+K EL F Y ++ S A S Y+GT +L K
Sbjct: 66 TKKQATAIAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK-- 101
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWD 201
+P +V + + +GR+I EF TF+L Y PN+G +S R R +WD
Sbjct: 102 VEPIQVEYPTIGAPGPMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWD 156
Query: 202 KRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 260
+ +E++ + + KP+I+ GD+NV+H+EID+ +P+ PN+ GFT
Sbjct: 157 DKYREYIKRLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTD 201
Query: 261 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEEL 318
ER++F A+L G D +R L+ D ++W + K RIDY++VS+ +
Sbjct: 202 QEREKFSALLDAG-FTDTFRSLN--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRI 258
Query: 319 KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
+ + + G DH P+ LE++
Sbjct: 259 AENVTESCVIDTGAR------QDHAPILLEIN 284
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 137/312 (43%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KF++WN N L VK N FS D D LQE ++ + D P HQ
Sbjct: 1 MKFISWNVNGLRAIVKKN---FSEVFEALDADFFCLQETKLQEGQIELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K Y+GTA+ K+ + +E+
Sbjct: 53 -------------------------YWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE--- 84
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + K +I
Sbjct: 85 -HDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKSVIL 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ + K + GFT ER++F +L G D
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R+ + D + +S WS + RIDYF+VS+ L +R++ ++ I
Sbjct: 186 FRYFY--PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDNLNERLLDAKIHTDII----- 238
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L+L
Sbjct: 239 -GSDHCPVELDL 249
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F D D+ +QE +M G D
Sbjct: 3 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQP-GQLD------------ 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+++P + YQ S Y+GT + K+ +P V++ L ++
Sbjct: 47 -------------IATPGY--YQYINSADKKGYSGTMVFTKE--KPIAVTYDLGID--EH 87
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K +I CG
Sbjct: 88 DHEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCG 145
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + + + G ID++R
Sbjct: 146 DLNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG-FIDSFR 189
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+L+ E++ + WS + + RIDYF+VSE+ KD+I Q I + F GS
Sbjct: 190 YLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHTDVF-GS 242
Query: 341 DHCPVSLEL 349
DHCPVSL++
Sbjct: 243 DHCPVSLDI 251
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 58/320 (18%)
Query: 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
+ ++ + +K +WN + L VK + +++ DPD++ LQE +
Sbjct: 46 TSKDGRNANMKITSWNVDGLRAWVKK---KGLDWVREEDPDILCLQETKC---------- 92
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVS 151
EK + S P + ++ W + D + Y+G A+L K +P KV+
Sbjct: 93 -------------AEKALPAEITSMPEYP-HKYWAASGDKEGYSGVAMLCKT--EPIKVT 136
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + K +++ +GRVI AEF +FYL+ Y PN R+ WD + ++ +
Sbjct: 137 YGIGKE--EHDKEGRVITAEFPSFYLVTAYVPNAS--RGLVRLDYRKTWDVDFRAYLSEL 192
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KPL+ CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L
Sbjct: 193 DMQKPLVLCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLL 237
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
G +D++R L+ E+ F W+ + + R+DYF++S L + +++
Sbjct: 238 AAG-FVDSFRELYPEQTNAYTF-WTYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNK 295
Query: 331 GIELEGFYGSDHCPVSLELS 350
+ GSDHCP++L ++
Sbjct: 296 AM------GSDHCPITLHIA 309
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 135/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K EF D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---EFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + FT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNASFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 163/338 (48%), Gaps = 62/338 (18%)
Query: 16 KPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVI 75
KP ++ K+ T E+ + LK WN + +K +++T PD+
Sbjct: 63 KPEVAEEPKEEVYTTDRKSESGEACNLKISAWNVGGMKAWIKKGG---IDYLTKESPDIF 119
Query: 76 ALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-Y 134
QE ++ D TK E L +Y I ++ A+ K Y
Sbjct: 120 FAQETKI----------------DATKPPPEADL-----------DDYHITYNAAEKKGY 152
Query: 135 AGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194
+G AL KK +P V+ + +++ +GR+I AE+++FY + Y PN+ K +
Sbjct: 153 SGVALFSKK--EPLSVTKGM--GIEEHDKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDY 208
Query: 195 QRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 253
R++WDK ++ + K P+I CGD+NV+HEEID+ +P+ N+
Sbjct: 209 --RQEWDKDFHAYLKKLDAKKPVICCGDMNVAHEEIDLKNPK------------SNRNK- 253
Query: 254 GQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYF 312
PGFT ER+ F ++L G +D++R L+ +E D +++ GN K G R+DY
Sbjct: 254 -TPGFTDQEREGFTSLLDMG-FVDSFRHLYPEEADAYSFWTYMGNCRAKNVG--WRLDYG 309
Query: 313 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
++S+ L ++ C+ Q + L+ F GSDHCP+ + L+
Sbjct: 310 VISKALVPKL--CDNQ---MRLQTF-GSDHCPMVVSLA 341
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 69/313 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+KFV+WN N + +K F + D D +QE + A + D P
Sbjct: 1 MKFVSWNVNGIRACLKKG---FLAYFEQVDADFFCIQESKCQAGQVEIDLP--------- 48
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A K Y+GTA+ K P V + +
Sbjct: 49 ---------------------GYEQYWNYALRKGYSGTAIFTKHT--PLSVKYGVGDRDT 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
E +GR+I E+E FY++ Y PN+ K + R +W+ ++ ++++ KP+I+
Sbjct: 86 --EDEGRIITLEYERFYVVTVYTPNS--KRDLARLDERLEWEDNLRAYLIELDQQKPVIY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HE ID+ + + PN G GFT ER + +L G D
Sbjct: 142 CGDLNVAHEAIDLKNAK------------PNV---GNSGFTNEERGKMTLLLNSG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 336
+R ++ ++D F+W + + K R + + RIDYFIVS+ L + ++ +
Sbjct: 186 FRAMYPQEDNR--FTW-WSYMNKVRERNIGWRIDYFIVSDRLNQHVTNADIHDQQL---- 238
Query: 337 FYGSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 239 --GSDHCPVVLEL 249
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 138/310 (44%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + F+ D D+ ++QE +M + AP + E
Sbjct: 1 MKLISWNVNGLRACLTHG---FAESFAALDADIFSVQETKMQPGQADFAPDGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+S Y+GTA ++ QP V+ + ++
Sbjct: 55 -------------------------YSAEKKGYSGTACWCRE--QPLSVTTGIGIE--QH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRV+ E+ F+L+N Y PN+ ++ R +W+ + ++L K P+I CG
Sbjct: 86 DHEGRVLTLEYPGFWLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ + +K + GFT ER + +L G D++R
Sbjct: 144 DLNVAHREIDIKN---------------DKTNHMSAGFTDQERGKMTELLDAG-FADSFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
LH + + +S WS + + RIDYFIVS + D+I A E+ +G
Sbjct: 188 VLHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADKIRAAEIHNE------IFG 238
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 239 SDHCPVELDI 248
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K YAGTA+ K+ K ++ +
Sbjct: 53 -------------------------YWNYAERKGYAGTAVFTKE----KPITVANGFGVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY +N P +G K + F R W + + +V + KP+I
Sbjct: 84 EVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD++V+HE ID++ P+ ++ +PGFT ERK F +L G ID
Sbjct: 142 GGDMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ H ++ +S+ + R+DYF+VS L+D++ ++ L
Sbjct: 186 FRYFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDKLTNAKI------LSNIM 238
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 239 GSDHCPIELDV 249
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + + F +F D D+ +QE +M G D
Sbjct: 1 MKMVSWNVNGIRACMTKG---FMDFFQEIDADIFCIQETKMQP-GQLD------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ +P + Y + AD K Y+GT + K+ +P V++ L +
Sbjct: 45 -------------IVTPGYYQYM---NSADKKGYSGTMVFTKE--KPIAVTYDLGID--E 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K +I C
Sbjct: 85 HDHEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + + + G ID++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ E++ + WS + + RIDYF+VSE+ KD+I Q I + F G
Sbjct: 187 RYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHTDVF-G 239
Query: 340 SDHCPVSLEL 349
SDHCPVSL++
Sbjct: 240 SDHCPVSLDI 249
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK ++WN N + + F++F D D+ +QE ++ QE + +
Sbjct: 2 LKMISWNVNGIRAVMGKG---FTDFFQKEDADIFCIQETKV------------QEGQIEI 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
PF+ Y +W+ A+ K Y+G A+ K +P VS+ + +
Sbjct: 47 -----------------PFEGYYKYWNYAEKKGYSGVAVFTK--IKPITVSYGI--GIEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI EF+ +Y++ Y PN+ + R KW+ ++ KP+I C
Sbjct: 86 HDKEGRVITLEFDEYYVVTVYTPNS--QRGLTRLHYRMKWEDDFLSYLKSLERYKPVIVC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P+ NK++ GFT ER +F + + G ID +
Sbjct: 144 GDLNVAHKEIDLKNPQ------------SNKKN---AGFTEEERSKFDSYVNNG-FIDTF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ + WS + RIDYFIVSE +KDR+ + G
Sbjct: 188 RYFYPDR-IGVYTWWSYMFNSRQNNAGWRIDYFIVSERIKDRL------KDALVYSEITG 240
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 241 SDHCPVGILL 250
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 135/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A + D P HQ
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVELDLPGYHQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ + +S WS + RIDYF+ S K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTEI 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 134/289 (46%), Gaps = 60/289 (20%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
F +F + D DV +QE +M ++E+ ++ FK
Sbjct: 12 FMDFFNSVDADVFCIQESKM----------------------QQEQ-------NTFEFKG 42
Query: 123 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 181
Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+N Y
Sbjct: 43 YFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLVNVY 98
Query: 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 240
PN+ ++ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 99 TPNS--QQALFRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP------ 150
Query: 241 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 151 ---------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYMQQA 199
Query: 301 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 200 RDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 242
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 63/318 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V F ++ D D++ +QE ++
Sbjct: 1 MKLISWNVNGLRSCVGKG---FLDYFRRADADIVCVQETKL------------------- 38
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+E +L L P + Y+ +W+ A+ K Y+GTA+ + F+P V L
Sbjct: 39 ---QEGQL----ELELP--EGYRQYWNCAEKKGYSGTAVFTR--FEPLSVRKGLSDGD-- 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
+P+GRV+ EF F+L+N Y PN + + + + R W++R + ++ + KP++ C
Sbjct: 86 -DPEGRVLTLEFPAFFLVNVYTPNA--RRDLSRLEYRIAWEERFRAYLKELDARKPVVVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ + +F + G GFT ER+ +L+ G D +
Sbjct: 143 GDLNVAHREIDLKNAKF---------------NRGNAGFTDEEREAMTRLLEAG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ D WS P + R RIDYF+VS L A ++ I+ G G
Sbjct: 187 RHFYPDR-TDAYTWWSFMPKVRERNIGWRIDYFLVSARL-----APYLEDALID-SGIMG 239
Query: 340 SDHCPVSLELSEASSDSE 357
SDHCPV L + + E
Sbjct: 240 SDHCPVGLLMRDPGEQPE 257
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 64/308 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK N F F D D +QE ++ A +
Sbjct: 1 MKFISWNVNGLRAVVKKN---FMEFFEQQDADFFCIQETKLQAGQIE------------- 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L+ P + Y W+ A+ K Y+GTA+ K +P V++ + +
Sbjct: 45 -------------LTLPGYYQY---WNYAERKGYSGTAIFTKH--EPLNVTYGM--GVAE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GR+I E++ FYLL Y PN+ K + + R W+ + ++ + K P+I+C
Sbjct: 85 HDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLDY--RMSWEDAFRSYISTLNQKKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HE ID+ + +K + GF+ ER +F +L G D++
Sbjct: 143 GDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERAKFSQLLAAG-FTDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + ++ +S+ N + RIDYF+ +++L+ ++ + L G
Sbjct: 187 RYFYPDQVTYSWWSYRFN--ARQNNAGWRIDYFVTADQLQPQLADAAI------LTDVLG 238
Query: 340 SDHCPVSL 347
SDHCPV L
Sbjct: 239 SDHCPVML 246
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 60/311 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN + L VK + +++ PDV+ LQE +
Sbjct: 57 MKITSWNVDGLRAWVKK---KGLDWVRDEAPDVLCLQETKCA------------------ 95
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
EK + S P F + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 96 -----EKSLPDEITSMPEFPHK--YWAGSDEKEGYSGVAMLCKT--EPLKVTYGIGKE-- 144
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++ +GRVI AEF TF+L+ Y PN+G R+ WD + ++ KPL+
Sbjct: 145 EHDKEGRVITAEFPTFFLVTAYVPNSG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVL 202
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + +K + GFT ER+ F +L G D+
Sbjct: 203 CGDLNVAHEEIDLKN---------------SKGNKKNAGFTAEEREGFNQLLAAG-FTDS 246
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 247 FRELYPEQANAYTF-WTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAM------ 299
Query: 339 GSDHCPVSLEL 349
GSDHCP++L +
Sbjct: 300 GSDHCPITLHM 310
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPTTMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 145/311 (46%), Gaps = 65/311 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L F +F D D+ +QE ++ QE + D
Sbjct: 3 KLISWNVNGLRACAGKG---FLDFFKEVDADIFCIQESKL------------QEGQIDL- 46
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y+ +W+ A+ K Y+GTA+ K+ +P V + + ++
Sbjct: 47 ----------------DLEGYKSYWNYAEKKGYSGTAVFTKE--EPISVKKGIGIS--EH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ K+ R W+ ++++ + KP+I CG
Sbjct: 87 DNEGRVITAEYDDFYLVTVYTPNS--KQALERLDYRMVWEDVFRKYLKELEEKKPVIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GFT ER + +L+ G ID YR
Sbjct: 145 DLNVAHKEIDLKNP---------------KANRRNAGFTDEERDKMSELLEAG-FIDTYR 188
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
H D++ +S WS + RIDYF+ SE LKD++ A ++ + G
Sbjct: 189 --HFYPDVEGVYSWWSYRFNARANNAGWRIDYFLTSESLKDKLEAAKIHTEVM------G 240
Query: 340 SDHCPVSLELS 350
SDHCPV L ++
Sbjct: 241 SDHCPVELVIN 251
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N + V F ++ D D+ +QE ++ A G D
Sbjct: 3 KLISWNVNGIRACVTKG---FLDYFKEVDADIFCIQESKLQA-GQIDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W+ A+ K Y+GTA+ K+ +P V + + ++
Sbjct: 48 -----------------LEGYHQYWNYAEKKGYSGTAIFTKE--EPISVFYGI--GIEEH 86
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
+ +GRVI EF +Y++ Y PN+ +++ R W+ + ++ KP+I CG
Sbjct: 87 DKEGRVITLEFGDYYMVTVYTPNS--QQKLARLDYRMTWEDCFRSYLNNLDKQKPIIVCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GF+ ER +F L G ID YR
Sbjct: 145 DLNVAHNEIDLKNP---------------KSNRKNAGFSDEERAKFTEFLGNG-YIDTYR 188
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
+ + +++ + WS + RIDYF VSE L+D++++ ++ H + GS
Sbjct: 189 YFYPDREGAYTW-WSYMFNARANNAGWRIDYFCVSERLQDKLVSADIHDHIL------GS 241
Query: 341 DHCPVSLELS 350
DHCPV L ++
Sbjct: 242 DHCPVELVIN 251
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L +K F + D DV LQE ++ AG D
Sbjct: 6 KFISWNVNGLRAVMKKG---FLDIFQALDADVFCLQETKL-QAGQID------------- 48
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
L P ++ Y W+ AD K Y+GTA+ + P V + + ++
Sbjct: 49 ------------LDLPGYEQY---WNYADRKGYSGTAIFTR--LAPLSVRYGMGID--EH 89
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ +GR+I EF +Y + Y PN+ + E R KW+ ++++L KP+I CG
Sbjct: 90 DHEGRLITLEFPDYYFVTCYTPNS--QSELARLPYRMKWEDDFRQYLLDLHQEKPVIVCG 147
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+HEEID+ +P K + GF+ ER++ +L G D +R
Sbjct: 148 DLNVAHEEIDLKNP---------------KTNRKNAGFSDEERQKMTDLLAAG-FTDTWR 191
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+ + D+ +S WS + RIDYF+ +++L R+ + G
Sbjct: 192 YFY--PDVTGVYSWWSYRFKARQNNAGWRIDYFLTTKDLDSRLAKASI------YTDITG 243
Query: 340 SDHCPVSLEL 349
SDHCPV LEL
Sbjct: 244 SDHCPVGLEL 253
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 139/314 (44%), Gaps = 47/314 (14%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L V+WN N L +K D DV+ LQE ++ A G + K
Sbjct: 1 LSVVSWNVNGLRSLLKKAPRALDELARRTDADVLVLQETKLGADGRGAVDGEGEAPK--- 57
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK-KVSFSLEKTALK 160
+R + + S A Y+GTA+ ++ K K + +A
Sbjct: 58 ---------FLREYGTREYAT-----STARKGYSGTAMFIRDGDWAKMKRVEATRLSAGG 103
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 218
++ +GRV+ AE ++ +++N Y PN+G + + +R W++ I+E V L+ GK +I+
Sbjct: 104 FDDEGRVLTAELDSCFVVNAYVPNSG-ADLKRLPERVEVWERAIREHVRALESRGKAVIY 162
Query: 219 CGDLNVSHEEIDV--SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
CGDLNV+HEEID+ H E +A GFT ER +L+E L+
Sbjct: 163 CGDLNVAHEEIDLWGRHAENSKSA----------------GFTPEERAAMTRLLEECDLV 206
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R H+ D WS + + + R+DY + S L D I+ L
Sbjct: 207 DTFR-AHR-PDARAFTYWSYRAGAREKNRGWRLDYILASRRLADSIV------DAYALPD 258
Query: 337 FYGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 259 VLGSDHCPVGLRVA 272
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 454 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 501
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 502 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 540
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 541 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 598
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NVSH ID+ +P K + GFT ER + +L G +D +R
Sbjct: 599 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFR 642
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ F W+ + R R+DY +VSE +++ E++ + GS
Sbjct: 643 HLYPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GS 695
Query: 341 DHCPVSL 347
DHCP+++
Sbjct: 696 DHCPITI 702
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERDGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|24380027|ref|NP_721982.1| exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449865178|ref|ZP_21778839.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
gi|449872318|ref|ZP_21781457.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449874956|ref|ZP_21781919.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449893395|ref|ZP_21788687.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449947417|ref|ZP_21807362.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449956392|ref|ZP_21809488.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449969030|ref|ZP_21812969.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449984183|ref|ZP_21818869.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449999354|ref|ZP_21824494.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|450005194|ref|ZP_21826552.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|450031272|ref|ZP_21833605.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|450035308|ref|ZP_21834949.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|450056224|ref|ZP_21841931.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|450081460|ref|ZP_21851743.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|450094138|ref|ZP_21856912.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|450098379|ref|ZP_21857975.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|450138344|ref|ZP_21872113.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|450143104|ref|ZP_21873237.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|450148336|ref|ZP_21875574.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|450166036|ref|ZP_21882130.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|450171670|ref|ZP_21884124.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449152715|gb|EMB56415.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|449154571|gb|EMB58144.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449168602|gb|EMB71410.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449170674|gb|EMB73370.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449174469|gb|EMB76955.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449180434|gb|EMB82591.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449187090|gb|EMB88891.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|449188836|gb|EMB90526.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|449191780|gb|EMB93240.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|449195673|gb|EMB96986.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|449207002|gb|EMC07686.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|449215265|gb|EMC15472.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|449216620|gb|EMC16722.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|449221576|gb|EMC21344.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|449234127|gb|EMC33151.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|449236016|gb|EMC34952.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|449240040|gb|EMC38735.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|449243722|gb|EMC42131.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|449254334|gb|EMC52243.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449255826|gb|EMC53666.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449264441|gb|EMC61783.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|104773315|ref|YP_618295.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513293|ref|YP_812199.1| exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|385814875|ref|YP_005851266.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|103422396|emb|CAI96933.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116092608|gb|ABJ57761.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325124912|gb|ADY84242.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 73/327 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK +P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLEPVVTR 99
Query: 152 FSLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQ 205
+ EP +GR++ EF FY+ Y PN G N R R++WDK +
Sbjct: 100 PEIGAP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYR 150
Query: 206 EFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
++ + K P++ GD N +++EID+ HPE + GFT ER
Sbjct: 151 AYLEELDKKKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERA 195
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRI 322
FG +L G D +R +H + ++ +SW + K RIDY++VS L D++
Sbjct: 196 GFGQLLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQV 252
Query: 323 IACEMQGHGIELEGFYGSDHCPVSLEL 349
EM +E +DHCP+ LE+
Sbjct: 253 EKSEM------IETGERADHCPILLEV 273
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVS 151
E IL F NY +W S A YAGT L K+ P V+
Sbjct: 58 ET------------ILSY------FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EFE F++ Y PN G + R++WD + +++ Q
Sbjct: 99 FPEIGAPTTMDSEGRIITLEFEDFFVTQVYTPNAG--DGLRRLADRQEWDIKYADYLTQL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ GFT ER F A+L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SAGFTDEERAGFTALL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R LH D+ ++W + K RIDY++ S + D+++ EM
Sbjct: 202 EKG-FTDTFRHLH--GDLPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRIADKVLKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPILLEI 273
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 57/309 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N + ++ F ++I PD+IALQEV+ +D
Sbjct: 1 MKFISWNVNWIRAAIQKG---FLDYINNEKPDIIALQEVKAT--------------EDQF 43
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A + +++ + KN+ Y+ TA+ K+ +P VS+ L ++
Sbjct: 44 PARMDMEMMWYSVYWNSASKNW----------YSWTAVFTKE--KPLSVSYWLWME--EH 89
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ + R+I E+E FY + Y PN+ K E + R+ WD + + + KP+ C
Sbjct: 90 DNEWRIITVEYEKFYFVTVYTPNS--KRELERLEYRQLWDSLFLDHMRRLEAIKPIFVCW 147
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+++P+ PN+ FT ER F L G ID +R
Sbjct: 148 DLNVAHKEIDLTNPK------------PNR---WNAWFTDEERMGFQKFLDAG-FIDTFR 191
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
F + +K + + WS + R RIDYF+ S LK+ + + ++ GS
Sbjct: 192 FFYPDKAGEYSW-WSNFANARSRNIGWRIDYFLASWILKENL------KNAFIMQQTLGS 244
Query: 341 DHCPVSLEL 349
DHCPV +E+
Sbjct: 245 DHCPVWIEV 253
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 141/311 (45%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+KF++WN N L +++ F N T D D+ +Q+ R+ P D P +Q
Sbjct: 7 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFGIQDTRVEPNEVKIDLPGYYQ----- 58
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ A+ K YAGTA+ K+ K ++ +
Sbjct: 59 -------------------------YWNYAERKGYAGTAVFTKE----KPITVANGFGVP 89
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
+ + +GR I EF FY +N P +G K + F R W + + +V + KP+I
Sbjct: 90 EVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQIFRNYVTKLMQYKPVII 147
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GD++V+HE ID++ P+ ++ +PGFT ERK F +L G ID
Sbjct: 148 GGDMSVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDT 191
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R+ H ++ +S+ + R+DYF+VS L+D++ ++ L
Sbjct: 192 FRYFHPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDKLTNAKI------LNNIM 244
Query: 339 GSDHCPVSLEL 349
GSDHCP+ L++
Sbjct: 245 GSDHCPIELDV 255
>gi|170016857|ref|YP_001727776.1| exodeoxyribonuclease III [Leuconostoc citreum KM20]
gi|169803714|gb|ACA82332.1| Exodeoxyribonuclease III [Leuconostoc citreum KM20]
Length = 274
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 62/321 (19%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++ ++WN +S+ V++ W + N I PD+ A+QE ++ A G K
Sbjct: 1 MQLISWNIDSINAAVEHKSARGEMTW-DVLNQIAARQPDIFAIQETKLKAVGL--TKKQA 57
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
Q + D F +Y I+ S A S Y+GT +L ++ +P V +
Sbjct: 58 QTITD-------------------LFPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE +Y+ Y PN+G + R WD + ++
Sbjct: 97 PIINAPGDMDLEGRIITLEFENYYVSTVYTPNSG--SGLARLEERGAWDDAYRAYIQALD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I+ GD+NV+HEEID+ +P K + GFT ER++F A+L+
Sbjct: 155 AQKPVIFSGDMNVAHEEIDLKNP---------------KTNHNSAGFTDQEREKFSALLR 199
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
G D R + E+ ++W + K RIDY++VSE L ++ +
Sbjct: 200 AG-FTDTMRSQYPEQ--TGLYTWWAQISKTSKINNSGWRIDYYLVSERLAPKVKTTAVID 256
Query: 330 HGIELEGFYGSDHCPVSLELS 350
G+ DH P++LE++
Sbjct: 257 TGLR------QDHAPITLEIT 271
>gi|449881939|ref|ZP_21784704.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
gi|449250748|gb|EMC48797.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDGFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 138/309 (44%), Gaps = 63/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
K +WN SL N E+ + PDV+ QE + K+AP
Sbjct: 78 FKISSWNVVSLKSITNKNGMEY---VRRESPDVMCFQETK---CSEKNAPS--------- 122
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
E KL P + Y + + YAG AL K +P V + ++
Sbjct: 123 ----ESKL--------PGYHRY--FAAGVKEGYAGVALYSK--LKPLSVKIGIGHK--EH 164
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 220
+ +GRVI AE+E FYL+ Y PN G + +R KWD + ++ + S KP+I CG
Sbjct: 165 DTEGRVITAEYEDFYLVTAYVPNAG--RGLVTLPKRLKWDVAFKGYLKKLDSEKPVILCG 222
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P + GFT ER F +L G ID +R
Sbjct: 223 DLNVAHNEIDLKNPS---------------TNTKTAGFTQEERDGFTKLLNAG-FIDTFR 266
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ K+ + W N IG R + R+DYF+VSE + + C+ + + Y
Sbjct: 267 KLYPNKEGAYTY-W--NYIGNARSRNAGWRLDYFVVSERIMSTV--CD----SVIRKEVY 317
Query: 339 GSDHCPVSL 347
GSDHCP++L
Sbjct: 318 GSDHCPITL 326
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 144/316 (45%), Gaps = 73/316 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +K F++F D D ALQE +M +DA K
Sbjct: 1 MKFISWNVNGLRAAMKKG---FADFFHEQDADFFALQETKMQPDQLEDAMK--------- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
F+ Y ++ + A+ K Y+GT + K +P V++ +E K
Sbjct: 49 ------------------FEGYHMYMNSAERKGYSGTLIYTKH--EPLSVTYEIEGDVTK 88
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
+GRVI E+ FY + Y PN+ K+ R +W++ +++ +++ K P+I+
Sbjct: 89 ---EGRVITLEYPDFYFVCAYVPNS--KDGLLRLPYRIEWEEMLRKHLMELDKKKPVIYT 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+HEEID+ +P + PGF+ ER +L G D +
Sbjct: 144 GDLNVAHEEIDLKNP---------------ATNHKNPGFSDEERAAMTKLLDSG-FSDTF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIEL 334
R L+ + FS WS + R RIDYF+VSE L +D +I E +
Sbjct: 188 RELYPDTQ---KFSWWSYRMKARERNVGWRIDYFLVSERLLANVQDALIFDETE------ 238
Query: 335 EGFYGSDHCPVSLELS 350
GSDHCPV L ++
Sbjct: 239 ----GSDHCPVGLNIN 250
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L +++ F N T D D+ A+Q+ R+ A E++ D
Sbjct: 1 MKFMSWNVNGLRAALRHG---FVNTFTDLDADIFAIQDTRVEA----------NEVQID- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y +W+ A K YAGTA+ K+ K ++ + +
Sbjct: 47 ------------------LPGYYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 219
+ +GR I EF FY ++ P +G K + F R W + + +V + KP+I
Sbjct: 85 VDGEGRSITLEFPNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIG 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GD++V+HE+ID++ P+ ++ GFT ERK F +L G ID +
Sbjct: 143 GDMSVAHEKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ H ++ +S+ + K G R+DYF+ S L+D++I ++ L G
Sbjct: 187 RYFHPDEAKYTYWSYREDARAKNIG--WRLDYFLASHNLEDKMINTKI------LNNIMG 238
Query: 340 SDHCPVSLEL 349
SDHCP+ L+L
Sbjct: 239 SDHCPIELDL 248
>gi|450049676|ref|ZP_21839797.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
gi|449203427|gb|EMC04286.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
Length = 275
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DALKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK + E + +PD+I LQE+++
Sbjct: 1 MKFISWNVNGLRAAVKKGFLEK---LAEMNPDIIGLQEIKLS------------------ 39
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
E + + + NY A+ K Y+GTA+ K +P V++ + +
Sbjct: 40 -----EGQLELELEGYELYYNY------AERKGYSGTAVFTK--LKPISVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE +Y + Y PN+ K E + R W+ + ++ + KP++ C
Sbjct: 85 HDTEGRVITLEFEDYYFITCYTPNSKRKLERLDY--RVVWEDAFRNYLNELDKNKPIVLC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+++P+ + GF+ ER +F +L G +D +
Sbjct: 143 GDLNVAHNEIDLANPD---------------TNHKSAGFSDEERAKFTELLASG-YVDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R + ++ + + WS + R RIDYF+VSE DRI ++ + G
Sbjct: 187 RHFYPDRADEYSW-WSNFNKARERNIGWRIDYFVVSERFLDRIEDSKIH------QSVMG 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEIIL 249
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + + + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WDK+ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G ID YR H D+ ++W + K RIDY++ S + D++I M
Sbjct: 202 NKG-FIDTYR--HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGDR------QDHTPIVLEI 273
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EVLEELFPGYEHT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKQK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD NV+H+EID+++P N+ PGFT ER+ F +L +G
Sbjct: 161 PVLSTGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLLAKG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H DM ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHIH--GDMPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGA 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 218
+++P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I
Sbjct: 7 RHDPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIA 64
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HEEID+ + K + G GFT ER + +L G +D
Sbjct: 65 CGDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDT 108
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ D WS P + R RIDYF+VSE L+DRI+ + H +
Sbjct: 109 FRALYPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILEARIDDHVL------ 161
Query: 339 GSDHCPVSLEL 349
GSDHCPV LE+
Sbjct: 162 GSDHCPVVLEV 172
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 143/340 (42%), Gaps = 80/340 (23%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN SL V+ ++I +PDV+ LQE ++
Sbjct: 89 VKLISWNVFSLNAIVEKG--SLQHYIKEEEPDVLCLQETKL------------------- 127
Query: 102 KASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
+ + +L + P Y+ S A Y+G A+ K ++P +V + +
Sbjct: 128 -TNSKIELFKGKTFHRPDIYQYEFHNCSTAIKGYSGVAMYSK--YRPLRVHHGI--GVEE 182
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-------- 212
++ +GRVI EF FYL+ +Y PN+G +E + R++W++ ++ ++L S
Sbjct: 183 HDNEGRVITLEFAGFYLVGSYIPNSG--DELKRLEYRQRWNRDMEAYLLSLSTSGLKAGL 240
Query: 213 --------------------GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
GKP+IWCGDLNV+HEEID+ P N Y
Sbjct: 241 DVHPHGHELEYRVLDESERKGKPVIWCGDLNVAHEEIDLHDPAN------NHYT------ 288
Query: 253 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 312
GFT ER F ++K +D+YR H+ WS + R R+DYF
Sbjct: 289 ---SGFTDEERDDFTRVIKTMDFVDSYR--HENPTRQSYSFWSYRSAARARNMGWRLDYF 343
Query: 313 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 352
+ L + ++ + GSDHCPV L L A
Sbjct: 344 LYQRALTPYVRKAFIRNFVL------GSDHCPVGLLLDPA 377
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NVSH ID+ +P K + GFT ER + +L G +D +R
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFR 615
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ F W+ + R R+DY +VSE +++ E++ + GS
Sbjct: 616 HLYPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GS 668
Query: 341 DHCPVSL 347
DHCP+++
Sbjct: 669 DHCPITI 675
>gi|414597004|ref|ZP_11446575.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
gi|421876607|ref|ZP_16308163.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|421878297|ref|ZP_16309779.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|372557684|emb|CCF24283.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|390447911|emb|CCF25899.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|390482118|emb|CCF28636.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
Length = 274
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 143/321 (44%), Gaps = 62/321 (19%)
Query: 42 LKFVTWNANSLLLRVKN-------NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
++ ++WN +S+ V++ W + N I PD+ A+QE ++ A G K
Sbjct: 1 MQLISWNIDSINAAVEHKSARGEMTW-DVLNQIAARQPDIFAIQETKLKAVGL--TKKQA 57
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSF 152
Q + D F +Y I+ S A S Y+GT +L ++ +P V +
Sbjct: 58 QTITD-------------------LFPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDY 96
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ + +GR+I EFE +Y+ Y PN+G + R WD + ++
Sbjct: 97 PIINAPGDMDLEGRIITLEFENYYVSTVYTPNSG--SGLARLEERGAWDDAYRAYIQALD 154
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+I+ GD+NV+HEEID+ +P K + GFT ER++F A+L+
Sbjct: 155 AQKPVIFSGDMNVAHEEIDLKNP---------------KTNHNSAGFTDQEREKFSALLR 199
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
G D R + D ++W + K RIDY++VSE L ++ +
Sbjct: 200 AG-FTDTMR--SQYPDQTGLYTWWAQISKTSKINNSGWRIDYYLVSERLAPKVKTTAVID 256
Query: 330 HGIELEGFYGSDHCPVSLELS 350
G+ DH P++LE++
Sbjct: 257 TGLR------QDHAPITLEIT 271
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 141/324 (43%), Gaps = 65/324 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L +N S + PDVIA+QE ++ G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALMSRAVLRDLVELKPDVIAIQETKLSTKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ + F YQ+ W A YAG L KK +
Sbjct: 58 EILKEQ------------------FPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVTY 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ AL + +GR++ E E +L N Y PN G E R+ WD++ +++++
Sbjct: 100 PEIGGPAL-MDCEGRILTLELEDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVEL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I GD NV+HEEID+++P F+A GFT ER+ F
Sbjct: 157 DQQKPVIAMGDFNVAHEEIDLANPASNHFSA-----------------GFTDEERQGFSR 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L+ G D++R LH ++ ++W + K RIDYF+VS L+D+I
Sbjct: 200 LLERG-FTDSFRHLHGP--VEGQYTWWAQRVKTSKINNSGWRIDYFVVSNRLRDQIKNSA 256
Query: 327 MQGHGIELEGFYGSDHCPVSLELS 350
M G DH P+ LE++
Sbjct: 257 MIDSGAR------QDHTPILLEMT 274
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 137/310 (44%), Gaps = 65/310 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
K ++WN N L V F + D D+ +QE ++ G D
Sbjct: 3 KLISWNVNGLRACVGKG---FLDIFKELDADIFCIQESKL-QGGQIDLE----------- 47
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKY 161
Y +WS A+ K Y+GTAL K+ +P V++ L A +
Sbjct: 48 -----------------LDGYYQYWSYAEKKGYSGTALFTKE--EPLSVTYGLGIEAHDH 88
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 220
E GRVI AEF +Y++ Y PN+ ++ R +W+ ++ + KP+I+CG
Sbjct: 89 E--GRVITAEFPDYYVITCYTPNS--QDGLARLPYRMQWEDDFLSYLKKLEEHKPVIFCG 144
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + GFT ER +F +L+ G ID YR
Sbjct: 145 DLNVAHREIDLKNP---------------KSNRKNAGFTDEERGKFTQLLESG-FIDTYR 188
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
H D + +S WS + + RIDYF VS+ L+DR+ + + G
Sbjct: 189 --HFYPDQEGIYSWWSYRFKAREKNAGWRIDYFCVSKALEDRLESAMIHTE------IMG 240
Query: 340 SDHCPVSLEL 349
SDHCPV L +
Sbjct: 241 SDHCPVELVI 250
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLTEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 147/325 (45%), Gaps = 65/325 (20%)
Query: 29 TETSSEENSKK--DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG 86
TETS + K +K ++WN N L VK N F + D D LQE ++ A G
Sbjct: 6 TETSKSVSYLKGVSTMKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-G 61
Query: 87 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCF 145
D L P + Y W+ A+ K Y+GTA+ K+
Sbjct: 62 QID-------------------------LELPGYHQY---WNYAEKKGYSGTAIFAKE-- 91
Query: 146 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 205
+ V + L A ++ +GRVI E+ F+++ Y PN+ + E R W+ +
Sbjct: 92 EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFR 147
Query: 206 EFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
++ + + KP+I CGDLNV+H++ID+ + K + GFT ER+
Sbjct: 148 AYLNELNQEKPVILCGDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQ 192
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 324
+F +L G D +R+ + E + + WS + RIDYF+VSE L +R+++
Sbjct: 193 KFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVS 250
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
++ + GSDHCPV + L
Sbjct: 251 AKIHTDIL------GSDHCPVEVVL 269
>gi|395333468|gb|EJF65845.1| hypothetical protein DICSQDRAFT_77688 [Dichomitus squalens LYAD-421
SS1]
Length = 280
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
+W+++D K Y+GTA+L K +P V + L K GR++ EFE+ Y++ TY N
Sbjct: 69 YWAISDKKTYSGTAILSK--IEPLSVKYDLPGHPDKSAVKGRIVTLEFESCYVIGTYVTN 126
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + +++W+K + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 127 AG--TGLKTLDAKKEWNKHFEVYIRELDKKKPVIWTGDLNVAPTALDLANP--------- 175
Query: 244 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEG-------RLIDAYRFLHKEKDMDCGFSWS 295
K +W + PG+T AE F +L E + +D +R H + FS+
Sbjct: 176 ------KTNWNKTPGYTEAETSAFARVLNEDGAEPDAPKFVDVWRKRHPDLRHYTYFSYR 229
Query: 296 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
N + +G R+D F+VSE L++++ CE++ E + SDHCPV LEL+
Sbjct: 230 FN--CREKGLGWRLDMFVVSERLEEKVQMCEIRS-----EIYGASDHCPVVLELA 277
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y WS A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WSYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|450078845|ref|ZP_21851157.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
gi|449209706|gb|EMC10214.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPKIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|450046094|ref|ZP_21838754.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
gi|449199268|gb|EMC00342.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYVIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064803|ref|YP_004559662.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|386338368|ref|YP_006034537.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281004|dbj|BAK28578.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334283003|dbj|BAK30576.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVMSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D F Y++ W A YAGT L K P +S
Sbjct: 58 QILQDY------------------FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPDTMDSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DQVKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R++H D+ +SW + K RIDY++ S + D+I EM
Sbjct: 202 AKG-FTDTFRYIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NVSH ID+ +P K + GFT ER + +L G +D +R
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFR 615
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ F W+ + R R+DY +VSE +++ E++ + GS
Sbjct: 616 HLYPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GS 668
Query: 341 DHCPVSL 347
DHCP+++
Sbjct: 669 DHCPITI 675
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE----FSNF--ITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++F++WN +SL +++ P +S I PDV+A+QE + P G
Sbjct: 1 MQFISWNIDSLNAAIQHKSPRGEMTWSTLVEIAAMAPDVLAIQETKSPITG--------- 51
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
+EK+I F Y I+ + + + Y+GT +L K +P ++
Sbjct: 52 ------MTGPQEKVI------KELFPEYHIYQNTSTERKGYSGTMMLSKT--EPLNITTP 97
Query: 154 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
+ +GR++ EFE ++ Y PN+G E + R+ WD + Q ++
Sbjct: 98 SIDAPEGMDTEGRILTLEFENAFVSTVYTPNSG--RELARLEDRQGWDAKYQAYIESLDA 155
Query: 214 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272
KP+I+ GD+NV+HE ID+ +P K + GFT ER F ++L
Sbjct: 156 IKPVIFSGDMNVAHESIDLKNP---------------KANRRSAGFTDEERAGFTSLLSA 200
Query: 273 GRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
G +D +RF H D +SW + K RIDY++VS+ L D I +
Sbjct: 201 G-FVDTFRFQH--PDTIEAYSWWAQMSKTSKINNTGWRIDYYLVSQRLADNIDETSILNT 257
Query: 331 GIELEGFYGSDHCPVSLELSE 351
G DH PV+L L +
Sbjct: 258 GDR------QDHAPVTLSLKD 272
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 69/317 (21%)
Query: 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNH 94
++ +KF++WN N +++ F+ TF + D+ +Q++R+
Sbjct: 8 RRITMKFISWNVNGFRAAMRHG------FLDTFKELNADIFGMQDIRLSP---------- 51
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
E+ DT YQ W + + GTA+ K +P V+ +
Sbjct: 52 NEVSIDTTGY------------------YQYWNYSKEKSFDGTAIFTK--IKPLAVANGI 91
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 213
+ +++ GR I E+ FY + TY P +G E+ R WD+ ++++L+ +
Sbjct: 92 GVS--EFDQQGRTITLEYPNFYFVTTYVPFSG--EQLQRLDFRIAWDQAFRKYLLKLEAN 147
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 273
KP+I GD++V+HE ID++ P E+ GFT ER F +L G
Sbjct: 148 KPVIIGGDMSVAHEPIDLAQP---------------SENHHHAGFTEQERDDFTKLLNSG 192
Query: 274 RLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R+LH EKD+ WS G+ + + R+DY +VS L +I +
Sbjct: 193 -FTDTFRYLHPNEKDIYS--YWSYRYHGREKNEGWRLDYILVSNSLDSKIKKANI----- 244
Query: 333 ELEGFYGSDHCPVSLEL 349
L GSDHCPVSLE+
Sbjct: 245 -LTEIPGSDHCPVSLEM 260
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 143/315 (45%), Gaps = 72/315 (22%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P+K ++WN N L K F +++ D D+ LQE ++
Sbjct: 22 PVKLISWNVNGLRACQKKG---FEEYLSRADADIFCLQETKL------------------ 60
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+E I + LS Y +WS A+ K Y+GTAL K QP VS +
Sbjct: 61 -----QEDQIALDKLS------YHTFWSFAEKKGYSGTALFSK--IQPISVS---REIGH 104
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+ +GR + AEFE ++++ Y PN+ +E+ + R WD +++V K P++
Sbjct: 105 PLDSEGRTVTAEFEDYFVICCYTPNS--QEKLARIELRMDWDAAFRKYVSDLDKKKPVLI 162
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H ID+ +P K++ G++I ER+ F +L G D+
Sbjct: 163 CGDLNVAHNPIDLKNP---------------KQNEQNAGYSIQERQGFSTLLASG-FTDS 206
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS----EELKDRIIACEMQGHGIEL 334
+R+L+ +K D WS + + RIDY++ S + +KD II ++
Sbjct: 207 FRYLYPDK-TDAYSWWSYRFHAREKNIGWRIDYWLASKRFEQHIKDSIIEDQV------- 258
Query: 335 EGFYGSDHCPVSLEL 349
GSDH PV L L
Sbjct: 259 ---LGSDHAPVVLVL 270
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 59/313 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
L+ +WN N + +K N F +P ++ +QE ++
Sbjct: 235 LQIWSWNVNGIRAILKKN--RIQEFFEQANPTILCVQESKID------------------ 274
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLAD---SKYAGTALLVKKCFQPKKVSFSLEKTA 158
EE++ + P +Y +W+ YAGT + K K +S S +
Sbjct: 275 ----EERMAADKVKDKFP-ADYLQYWNCCKPPIKGYAGTIIFSK----IKPISVSYDIGV 325
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPL 216
K++ +GR I EFE F+L+ Y PN+G + + + R +WD + ++ L+ GKP+
Sbjct: 326 HKHDKEGRTITLEFEKFFLVGVYVPNSGATLKWHDY-RCSEWDLDFRAYLKGLERRGKPV 384
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGD+NV+H+EID+ P K + FT ER+ F K G +
Sbjct: 385 ILCGDMNVAHQEIDIFDP---------------KRNERMACFTNEERQSFSNFTKMG-FV 428
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R L+ K + F W + K R+DYF+VS ++K + E+
Sbjct: 429 DTFRELYPGK-IKYSF-WDIRDKSRKENKGWRLDYFMVSRQIKHALTDAEIHNE------ 480
Query: 337 FYGSDHCPVSLEL 349
F+GSDHCPVSL L
Sbjct: 481 FWGSDHCPVSLTL 493
>gi|449910115|ref|ZP_21794552.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
gi|450087652|ref|ZP_21854395.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|450127489|ref|ZP_21868618.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449217560|gb|EMC17602.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|449230690|gb|EMC29939.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449260262|gb|EMC57766.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPI-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|387785665|ref|YP_006250761.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
gi|379132066|dbj|BAL68818.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
Length = 297
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 23 MKLISWNIDSLNAALTSDSTRALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 79
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 80 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 120
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 121 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 178
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 179 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 223
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 224 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 280
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 281 DSGTR------QDHTPILLKI 295
>gi|381337000|ref|YP_005174775.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|356644966|gb|AET30809.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 272
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 150/325 (46%), Gaps = 70/325 (21%)
Query: 42 LKFVTWNANSL-------LLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKN 93
+KF++WN +S+ +R + W N I T PDV A+QE ++ + G +K
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTL-NEIATIRPDVFAIQETKLKSTGLTKKQATA 59
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVS 151
EL F Y ++ S A S Y+GT +L K +P +V
Sbjct: 60 IAEL----------------------FPEYHLYVNSSTARSGYSGTMVLSK--VEPIQVE 95
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + +GR+I EF TF+L Y PN+G +S R R +WD + +E++
Sbjct: 96 YPTIGAPGPMDLEGRIITLEFPTFFLSTVYTPNSG-----SSLIRLPERGEWDDKYREYI 150
Query: 209 LQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
+ + KP+I+ GD+NV+H+EID+ +P+ PN+ GFT ER++F
Sbjct: 151 KRLDATKPVIFSGDMNVAHQEIDLKNPK------------PNRH---SAGFTDQEREKFS 195
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSG--NPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
A+L G D +R L+ D ++W + K RIDY++VS+ + + +
Sbjct: 196 ALLDAG-FTDTFRSLN--PDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTES 252
Query: 326 EMQGHGIELEGFYGSDHCPVSLELS 350
+ G DH P+ LE++
Sbjct: 253 CVIDTGAR------QDHAPILLEIN 271
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFSELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGVEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
++ V+WN N + ++ F +F D DV +QE +M P + P +Q +
Sbjct: 1 MRLVSWNVNGIRACMQKG---FMDFFKEIDADVFCIQETKMQPGQLEIETPGYYQYMNSA 57
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y+GT + K+ +P V++ L +
Sbjct: 58 EKKG-----------------------------YSGTMVFSKQ--KPLSVTYGL--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K ++ C
Sbjct: 85 HDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID++
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG-FIDSF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+L+ +++ + WS + + RIDYF+VSE+ K+ I + YG
Sbjct: 187 RYLYPKQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------TDIYG 239
Query: 340 SDHCPVSLEL 349
SDHCPVSLE
Sbjct: 240 SDHCPVSLEF 249
>gi|300811911|ref|ZP_07092372.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497108|gb|EFK32169.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 140/327 (42%), Gaps = 73/327 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
D F Y W A YAGT L KK P
Sbjct: 58 AALADL------------------FPEYDFVWRSSMEPARKGYAGTMFLYKKGLDPLVTR 99
Query: 152 FSLEKTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQ 205
+ EP +GR++ EF FY+ Y PN G N R R++WDK +
Sbjct: 100 PEIGAP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYR 150
Query: 206 EFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
++ + K P++ GD N +++EID+ HP K + GFT ER
Sbjct: 151 AYLEELDKKKPVLASGDFNAAYQEIDLKHP---------------KNNHHSAGFTDEERA 195
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRI 322
FG +L G D +R +H + ++ +SW + K RIDY++VS L D++
Sbjct: 196 GFGQLLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQV 252
Query: 323 IACEMQGHGIELEGFYGSDHCPVSLEL 349
EM +E +DHCP+ LE+
Sbjct: 253 EKSEM------IETGERADHCPILLEI 273
>gi|422844657|ref|ZP_16891367.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685174|gb|EGD27297.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 142/323 (43%), Gaps = 65/323 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWP--EFSNFIT----TFDPDVIALQEVRMPAAGSKDAPKNHQ 95
++ ++WN +SL + P E + + DPDV+ALQE ++PA+G K HQ
Sbjct: 1 MRLISWNIDSLNAALTGTSPRAEMTRGVLKNLHDLDPDVLALQETKLPASGPS---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
D E + R+ P K Y AGT L KK P +
Sbjct: 58 AALADLFP---EYYFVWRSSMEPARKGY-----------AGTMFLYKKGLDPVVTRPEIG 103
Query: 156 KTALKYEP---DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVL 209
EP +GR++ EF FY+ Y PN G N R R++WDK + ++
Sbjct: 104 AP----EPMDFEGRILTLEFPDFYVTQVYTPNAG-----NGLVRLGDRQEWDKCYRAYLE 154
Query: 210 QCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
+ K P++ GD N +++EID+ HPE + GFT ER FG
Sbjct: 155 ELDKKKPVLASGDFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQ 199
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACE 326
+L G D +R +H + ++ +SW + K RIDY++VS L D++ E
Sbjct: 200 LLAAG-FTDTFRQIHGQ--VEGVYSWWAQRVRTAKANNSGWRIDYWLVSNRLADQVEKSE 256
Query: 327 MQGHGIELEGFYGSDHCPVSLEL 349
M +E +DHCP+ LE+
Sbjct: 257 M------IETGERADHCPILLEI 273
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 136/312 (43%), Gaps = 67/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF++WN N L VK F + D D LQE ++ QE + D
Sbjct: 1 MKFISWNVNGLRAAVKKG---FLDVFNQLDADFFCLQETKL------------QEGQIDL 45
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPK-KVSFSLEKTAL 159
P + Y +W+ A+ K Y+GTA+ K QP V + L L
Sbjct: 46 -----------------PLEGYTQYWNYAEKKGYSGTAIFAK---QPALSVQYGLGIEEL 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+E GR+I E+ FYL+ Y PN + E R +W+ +E++ Q KP+I
Sbjct: 86 DHE--GRLITLEYPEFYLVTCYTPNA--QSELKRIDFRLQWEAAFREYLHQLDEKKPVII 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H+ ID+ + PN+ G+ GF+ ER F +L G D
Sbjct: 142 CGDLNVAHQNIDLKNWR------------PNR---GKAGFSDEERNAFTELLNTG-FTDT 185
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGF 337
+R+L+ E + WS + RIDYF+VS L KD AC
Sbjct: 186 FRYLYPETTGVYSW-WSYRFHARENNAGWRIDYFLVSNRLQKDIQEACIYT-------DI 237
Query: 338 YGSDHCPVSLEL 349
GSDHCPV L L
Sbjct: 238 LGSDHCPVGLTL 249
>gi|397650247|ref|YP_006490774.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449886258|ref|ZP_21786082.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449899435|ref|ZP_21791014.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449902334|ref|ZP_21791521.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
gi|449914622|ref|ZP_21795690.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449918470|ref|ZP_21797358.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449924021|ref|ZP_21799361.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449932133|ref|ZP_21802696.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449936390|ref|ZP_21803954.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449965327|ref|ZP_21811828.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449974218|ref|ZP_21815156.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449990606|ref|ZP_21821643.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449995318|ref|ZP_21822938.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|450009909|ref|ZP_21828413.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|450024674|ref|ZP_21831354.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|450039059|ref|ZP_21836028.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|450066012|ref|ZP_21845736.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|450074617|ref|ZP_21849401.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|450104975|ref|ZP_21859579.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|450112046|ref|ZP_21863021.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|450114997|ref|ZP_21863656.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|450121162|ref|ZP_21866165.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|450155950|ref|ZP_21878557.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|450175808|ref|ZP_21885407.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|450181071|ref|ZP_21887604.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|392603816|gb|AFM81980.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449157725|gb|EMB61160.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449160314|gb|EMB63587.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449161746|gb|EMB64920.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449163318|gb|EMB66426.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449165605|gb|EMB68595.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449171324|gb|EMB73989.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449178594|gb|EMB80847.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449181544|gb|EMB83625.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449184613|gb|EMB86546.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|449190538|gb|EMB92100.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|449191723|gb|EMB93189.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|449200715|gb|EMC01736.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|449208906|gb|EMC09462.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|449209331|gb|EMC09860.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|449222800|gb|EMC22515.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|449225195|gb|EMC24806.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|449228466|gb|EMC27831.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|449229432|gb|EMC28746.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|449236512|gb|EMC35427.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|449246186|gb|EMC44498.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|449247359|gb|EMC45642.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|449254437|gb|EMC52345.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449258366|gb|EMC55948.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449262860|gb|EMC60299.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
Length = 275
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP N+ PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|196233332|ref|ZP_03132177.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
gi|196222637|gb|EDY17162.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
Length = 216
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 54/245 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + +K F++FI + +PD++ALQE T
Sbjct: 1 MKLISWNVNGIRAVLKKG---FTDFIESENPDILALQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA+ E+ +++ +AL+ Y +W++A+ K Y+GTA+ K K ++ +L +
Sbjct: 37 KATPED-VVVPQALAE-----YTSFWNIAEKKGYSGTAIFTKT----KPIAVTLGIGVAE 86
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI AE+ F+L+N Y PN+ K E R++WD+ ++ + KP+IWC
Sbjct: 87 HDREGRVITAEYADFFLVNVYVPNS--KRELTRLAYRQQWDRDFLAYLKKLELKKPVIWC 144
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID++ P K++ GFT ER F A + G +DA+
Sbjct: 145 GDLNVAHTEIDLARP---------------KDNVKNHGFTPEERAGFDAFVGAG-FVDAF 188
Query: 280 RFLHK 284
R K
Sbjct: 189 REFEK 193
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTGLLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|392567192|gb|EIW60367.1| hypothetical protein TRAVEDRAFT_45617 [Trametes versicolor
FP-101664 SS1]
Length = 362
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 66/319 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ WN L K F ++ DPDV+ L E ++ + E D
Sbjct: 97 VRIAAWNICGLAAAQKKG---FKYYVEAEDPDVLVLTETKV-----------NNEPVDPA 142
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
ASR F + +W+++D K Y+GTA+L K P V ++L
Sbjct: 143 LASR--------------FAHR--YWAISDKKTYSGTAILSK--VDPLSVDYTLPGHPDP 184
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
GR++ EF + Y++ TY N G + +++W+ + ++ + K P+IW
Sbjct: 185 KSVKGRIVTLEFASCYVVGTYVVNAG--TGLKTLDAKKEWNTHFEAYIRELDAKKPVIWT 242
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGR---- 274
GDLNV+ +D+++P K +W + PG+T AE + IL +
Sbjct: 243 GDLNVAPTALDLTNP---------------KPNWNKTPGYTEAETSSYARILNTSKEEVD 287
Query: 275 ---LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
+D +R LH FS+ N + +G R+D F+VS L++R+ CE++
Sbjct: 288 APQFVDVWRKLHPALKHYTYFSYRFN--CREKGIGWRLDMFVVSARLEERVKMCEIRS-- 343
Query: 332 IELEGFYGSDHCPVSLELS 350
E + SDHCPV +EL+
Sbjct: 344 ---EVYGASDHCPVVMELA 359
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 142/322 (44%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAG-SKDAPKNH 94
+KF++WN +SL + ++ + + + DVIA+QE ++P G SK
Sbjct: 1 MKFISWNIDSLNAALTSDSARAIMSRLVLDTVIKENADVIAIQETKLPYTGLSKKHIAKL 60
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 154
E D + R+ P A YAGT L KK + + ++
Sbjct: 61 AEYFPDYD-------YVYRSSEDP-----------ARKSYAGTMTLYKKGLKVEP-TYPQ 101
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC 211
+ +GR+I EF+ FY + Y PN G N R R+ WDK +++
Sbjct: 102 IGAPCTMDFEGRIITLEFDNFYFTHVYTPNAG-----NGLTRLADRQVWDKLYADYLKSL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP+I GD NV+HEEID++HPE N E PGFT ER+ F +L
Sbjct: 157 DQNKPVIAAGDFNVAHEEIDLAHPE------------NNHE---SPGFTDEEREGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R +H ++ ++W + K RIDYF+VSE +KD I +M
Sbjct: 202 AKG-FTDTFRHIHGR--VEGKYTWWAQRVKTSKINNSGWRIDYFLVSERIKDLITNSDMI 258
Query: 329 GHGIELEGFYGSDHCPVSLELS 350
G DH P+ LE++
Sbjct: 259 DSGER------QDHTPIVLEIN 274
>gi|342217311|ref|ZP_08709958.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341588201|gb|EGS31601.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 279
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 145/324 (44%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFITTF----DPDVIALQEVRMPAAGSKDAPKNHQ 95
+KF++WN +SL L + + S + +PDVIA+QE ++P G + K+ Q
Sbjct: 1 MKFISWNIDSLNAALTSDSARAQLSRGVLRRLQEENPDVIAIQETKLPEKGP--SKKHIQ 58
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L++ F +Y W+ A YAGT L KK + +V+
Sbjct: 59 ALEE-------------------WFPDYNYVWTSSCPPARKGYAGTMTLYKKTLK-AEVT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
F + +GR+I EF+ FY Y PN G N R R+ WD++ +++
Sbjct: 99 FPEIGAPTTMDHEGRIITLEFDRFYFTQVYTPNAG-----NGLVRLGDRQIWDEKFADYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP+I GD NV+H+EID+ +P+ N+ PGFT ER F
Sbjct: 154 EGLDQEKPVIATGDFNVAHKEIDLKNPD------------ANRR---SPGFTDEERLGFS 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G +D++R +H D++ +SW + K RIDYF+VS+ +KD +I
Sbjct: 199 KLLDRG-FVDSFRHIH--GDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIKDLVIES 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ L
Sbjct: 256 NMIDSGER------QDHTPLILRF 273
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 136/310 (43%), Gaps = 64/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L + + +F+ D DV ++QE +M + AP+ + E
Sbjct: 1 MKLISWNVNGLRACLTH---DFAASFAALDADVFSVQETKMQPGQADFAPEGYTEYT--- 54
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+S Y+GTA K +E+ +
Sbjct: 55 -------------------------YSAEKKGYSGTACWCKTVPLSVTTGIGIEE----H 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRV+ E+ YL+N Y PN+ ++ R W+ + ++L+ K P+I CG
Sbjct: 86 DHEGRVLTLEYPESYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ + AK N GFT ER + +L G D++R
Sbjct: 144 DLNVAHQEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAVG-FTDSFR 187
Query: 281 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
+H + + +S WS + + RIDYFIVS + D+I A E+ +G
Sbjct: 188 AIHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKIKAAEIHNE------VFG 238
Query: 340 SDHCPVSLEL 349
SDHCPV L++
Sbjct: 239 SDHCPVELDI 248
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 139/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDAPKNHQELKDD 100
+K ++WN N L +K + E +F+ D DV ALQE +M P D P
Sbjct: 3 MKCISWNVNGLRACLKKGFME--SFVK-LDADVFALQETKMQPEQAILDLP--------- 50
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
Y+ +W+ A+ K Y+GTA+ + +P V++ L
Sbjct: 51 ---------------------GYRQYWNSAERKGYSGTAVFSR--IEPLAVTYGLGIE-- 85
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 218
+++ +GRVI EF Y + Y PN+ K R +W+ + +++ K P+I
Sbjct: 86 EHDHEGRVITLEFPDCYFVTVYTPNS--KRGLERLAYRMEWEDAFRAYLVALDAKKPVIV 143
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+H EID+ +P K + GFT ER +F +L G ID
Sbjct: 144 CGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERGKFTELLDAG-FIDT 187
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R L+ ++ + WS + RIDYF+ S L+++I + +
Sbjct: 188 FRALYPDRTGIYTW-WSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNE------VF 240
Query: 339 GSDHCPVSLEL 349
GSDHCPV LEL
Sbjct: 241 GSDHCPVGLEL 251
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 140/316 (44%), Gaps = 72/316 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ TWN N L +K F +FI DPD++ LQE ++ D KN
Sbjct: 1 MRIYTWNVNGLRSILKKG---FLDFIKDEDPDILCLQETKLQEEQIDDEIKN-------- 49
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
K Y ++S A+ K Y+G A+ K +PK + + + +
Sbjct: 50 ------------------LKGYYKYFSFANKKGYSGVAIFTK--VEPKNIYYGI--GIEE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-----RKWDKRIQEFVLQCSGKP 215
++ +GR+++AE+E F L N Y PN +E ++ R + K + E GK
Sbjct: 88 FDTEGRILIAEYEDFILFNIYFPNGKMSDERLDYKLRFYDAIMDYSKNLLE-----EGKN 142
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 275
LI CGD N +H EID+ +P K++ GF ER+ L+ G
Sbjct: 143 LIICGDYNTAHREIDLKNP---------------KQNEKSSGFLPIEREYIDRFLEIG-F 186
Query: 276 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIE 333
IDAYR + +K ++W + + K R K + RIDYF VS +I E+ H
Sbjct: 187 IDAYRHFYPDK---IEYTW-WSYMFKAREKNVGWRIDYFFVSNNFISKIKDVEILTH--- 239
Query: 334 LEGFYGSDHCPVSLEL 349
+GSDHCPV L +
Sbjct: 240 ---IHGSDHCPVKLTI 252
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 57/314 (18%)
Query: 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDD 100
P K + WN N + +K + + I T P +I + E ++ D
Sbjct: 2 PTKIIAWNINGIKAHLKKD--NLFDLIETEKPHIICMGETKISCPFI------------D 47
Query: 101 TKASREEKLILMRALSSPPFKNYQI-WWS--LADSKYAGTALLVKKCFQPKKVSFSLEKT 157
+ +EK+ K Y+ +WS L Y+GTA+ K+ K +S L
Sbjct: 48 VQNQLKEKI-----------KGYKYRYWSPCLVKKGYSGTAIFSKR----KPISTYLGMN 92
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 216
+ +GR+I EF+ +YL++ Y PN+G + R +WDK +++ KP+
Sbjct: 93 QPGEDDEGRMITLEFKEYYLIHVYTPNSGQGLVRLQY-RTEEWDKNFRKYCANLQKIKPI 151
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGDLNV++E ID+++P NK++ GFT ERK F L + LI
Sbjct: 152 IICGDLNVANENIDLANPS------------SNKKN---AGFTDVERKSFKLTLTKLNLI 196
Query: 277 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 336
D +R+L+ D+ F W+ + + RIDYF+VSE+L ++ + H
Sbjct: 197 DTFRYLY-PTDIKYSF-WTYYHNARPKNIGWRIDYFLVSEKLLPKVKDSNILTH------ 248
Query: 337 FYGSDHCPVSLELS 350
GSDH PV L+L+
Sbjct: 249 IMGSDHAPVILKLT 262
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGVEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|386087152|ref|YP_006003026.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387910253|ref|YP_006340559.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387575188|gb|AFJ83894.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
Length = 275
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFS----NFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +Y I W A YAGT L KK P ++
Sbjct: 58 QILEDY------------------FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+TF++ Y PN G + R+ WD++ +++ +
Sbjct: 99 YPEIGAPSTMDCEGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDEKYADYLAEL 156
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER F +L
Sbjct: 157 DAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G ID YR H D+ ++W + K RIDY++ S + D++I M
Sbjct: 202 NKG-FIDTYR--HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGDR------QDHTPIVLEI 273
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 142/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA++ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIVAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|320547311|ref|ZP_08041602.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
gi|320448009|gb|EFW88761.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
Length = 275
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 139/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAVLSRAVIDTLVAEDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ +D F +YQ+ W A YAGT L K P +S
Sbjct: 58 QILEDY------------------FPDYQVSWRSSVEPARKGYAGTMFLYKNHLTPT-IS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ FY+ Y PN G + R+ WD++ +++ +
Sbjct: 99 FPEIGAPDTMDYEGRIITLEFDNFYVTQVYTPNAG--DGLKRLTERQIWDEKYADYLAEL 156
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID+++P N+ GFT ER F +L
Sbjct: 157 DQTKPVLATGDYNVAHNEIDLANPN------------SNRR---SAGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R+LH D+ +SW + K RIDY++ S + D+I EM
Sbjct: 202 AKG-FTDTFRYLH--GDIPNVYSWWAQRSKTSKINNTGWRIDYWLASNRIADKITKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPIVLEI 273
>gi|449944367|ref|ZP_21806724.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
gi|449148594|gb|EMB52451.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
Length = 275
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D++A+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
+ D F +Y + W A YAGT L K QP ++
Sbjct: 58 RILKDY------------------FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + R+ WD++ ++ Q
Sbjct: 99 YPEIGAPATMDDEGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID++HP + PGFT ER F +L
Sbjct: 157 DKQKPVLATGDYNVAHKEIDLAHPS---------------SNRCSPGFTDEERAGFTHLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
++G D +R++H D+ +SW + K RIDY+++S L D+I+ EM
Sbjct: 202 EQG-FTDTFRYIH--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ L++
Sbjct: 259 DSGTR------QDHTPILLKI 273
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMNWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + WS + R RIDYFI S+ L D+I ++ + +GS
Sbjct: 188 HLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGS 240
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 241 DHCPVELVI 249
>gi|313887924|ref|ZP_07821603.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846090|gb|EFR33472.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 275
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 145/318 (45%), Gaps = 53/318 (16%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSN----FITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +S+ L +N + S I DPD+IA+QE ++P G K H+
Sbjct: 1 MKIISWNIDSINAALTSDSNRAQMSREVLATILREDPDIIAIQETKLPKGGPS---KKHK 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ + A + + S P A YAG KK +P V+F
Sbjct: 58 EILAEMFADYDYVFVS----SEEP----------ARKGYAGNMAFFKKGLEPT-VTFPKI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+ F+L Y PN G E R+ WD++ E++ K
Sbjct: 103 DAPDTMDFEGRIITLEFDDFFLTQVYTPNAG--GELKRLPLRQIWDEKYGEYLSSLDEIK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P+I GD NV+H+EID+++P+ +++ GFT ER+ F +L G
Sbjct: 161 PVIATGDFNVAHKEIDLANPD---GNRMSA------------GFTDEERQGFTNLLDRG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D++ F+W + K RIDYFIVS+ +KD + +M G
Sbjct: 205 FTDTFRHIH--GDVEGVFTWWAQRVKTSKINNSGWRIDYFIVSDRIKDLVKDSKMIDSGE 262
Query: 333 ELEGFYGSDHCPVSLELS 350
DH P+ L+++
Sbjct: 263 R------QDHTPILLDIN 274
>gi|429205564|ref|ZP_19196836.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
gi|428146175|gb|EKW98419.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
Length = 275
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 137/323 (42%), Gaps = 61/323 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+ ++WN +SL + ++ I PD+ A+QE ++ A G K HQ
Sbjct: 1 MILISWNIDSLNAALTSDSQRAHATRAVLQTIYAHKPDIFAIQETKLRATGPT---KKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
E+ L M F Y W A YAGT L K+ P VS
Sbjct: 58 EI-----------LATM-------FPEYDYVWRSSVEPARKGYAGTMYLYKRDLAPV-VS 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF FY+ Y PN G + R+ WD++ ++ +
Sbjct: 99 YPRIGAPEPMDDEGRIITLEFANFYVTEVYTPNAG--DGLKRLTERQGWDQKYAAYLHEL 156
Query: 212 SGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
K P++ GD NV+H EID++HPE + GFT ER F +L
Sbjct: 157 DQKKPVLASGDFNVAHHEIDLAHPE---------------NNHRSAGFTDEERAGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D++R +H D+ +SW + K RIDY++VSE + D+++ EM
Sbjct: 202 SYG-FTDSFRHVH--GDVTGVYSWWAQRVRTSKANNSGWRIDYWLVSERMVDQVVRSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLELSE 351
G DHCP+ LE+ +
Sbjct: 259 ATGDR------RDHCPILLEIKD 275
>gi|423068996|ref|ZP_17057784.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
gi|355365396|gb|EHG13119.1| exodeoxyribonuclease [Streptococcus intermedius F0395]
Length = 275
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 138/321 (42%), Gaps = 61/321 (19%)
Query: 42 LKFVTWNANSL--LLRVKNNWPEFSNFI----TTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + S + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLVGLDADIIAIQETKLSANGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
++ D+ F +Y+ W A YAGT L K+ PK ++
Sbjct: 58 KVLDEL------------------FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-IT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
F + +GR+I EF+ F++ Y PN G + R+ WDK+ +++
Sbjct: 99 FPEIGAPSTMDSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTAL 156
Query: 212 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H EID++HP N+ PGFT ER F +L
Sbjct: 157 DIEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLL 201
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
G D +R++H D+ +SW + K RIDY++ S + ++ EM
Sbjct: 202 NRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIAGKVTKSEMI 258
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 259 DSGAR------QDHTPIVLEI 273
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 90
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 91 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 148
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 149 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 192
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 193 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 245
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 246 SDHCPVEVVL 255
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 137/311 (44%), Gaps = 65/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + F + D D +QE +
Sbjct: 1 MKLISWNVNGLRAAVTHG---FEDTFKDLDADFFCVQETK-------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L + F Y +W+ A+ K Y+GTA+ K +P V++ + +
Sbjct: 38 ---------LQKGQIEIDFPGYYQYWNYAERKGYSGTAIFTKH--KPLNVTYGI--GIEE 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
Y+ +GR+I E+ +Y++ Y PN+ + + + R W+ + +V Q KP+I+C
Sbjct: 85 YDTEGRIITLEYANYYVITCYTPNS--QPKLKRLEYRMSWEDAFKNYVDQLKKDKPVIFC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER +F +L+ G D +
Sbjct: 143 GDLNVAHNEIDLKNP---------------KTNHKNAGFSDQERAKFTELLQSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D+ +S WS + RIDYF+ S +L D++ ++ +
Sbjct: 187 R--HFYPDLTGIYSWWSYRFNARKNNAGWRIDYFVTSNDLDDKLKDAKIHTE------IF 238
Query: 339 GSDHCPVSLEL 349
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|403223464|dbj|BAM41595.1| endonuclease [Theileria orientalis strain Shintoku]
Length = 533
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 47/355 (13%)
Query: 37 SKKDPLKFVTWNANSLL--LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGS-KDAPKN 93
S DP +TWN + L + + W F + DPD++ LQ+V++ ++ AP+
Sbjct: 191 SDDDPRTILTWNVSGLQNSMSKRAVWEPFVQMLKQHDPDIVILQDVKLCSSKILGTAPRL 250
Query: 94 HQELKDDTKASREEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKK 149
+ + +S ++ + L+ L FK Y SL+ + AG + +K F+ K
Sbjct: 251 YMRVFGGYVSSSYDQEVHDADLVIKLQKTIFKKYYCIHSLSAWRVAGQLVFIKNEFKYLK 310
Query: 150 VSFSLE-KTALKYE-PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
+ F+L KT KY P+GR I+ +F++FYLL+ +P GW S + R +WD+ + F
Sbjct: 311 IRFNLSIKTNAKYHHPEGRCIIVQFKSFYLLSLLSPLQGWVNR--SVEMRSRWDRELARF 368
Query: 208 ---------------VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
+ K I G+LN + E+ID+S PE K V +++
Sbjct: 369 LDNSKSNLPRSLLYHIFNSEDKATIISGNLNCAPEDIDLSDPEKLRMEK--SVVLHKQDE 426
Query: 253 WGQPGFTIAERKRFGAILKEGRLIDAYRFLH-----KEKDMDCGFSWSGNPIGKYRGKR- 306
G PG +R + I K G L D YR H +E+ + ++ +G + R
Sbjct: 427 VGFPGSRDIDRIGYYLITKAGNLTDVYRHKHPYDGSEERKKNIKYT----TLGTFDKTRC 482
Query: 307 -MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 360
+R + ++S+ + + CE+ G +++ G H P L+L EKRE
Sbjct: 483 FVRTNLVLMSKNFLNNVKRCEIIGRTEDMDP-SGWRHLPQLLKL-------EKRE 529
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P K + GF+ ER + +L G D +R
Sbjct: 144 DLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + WS + R RIDYFI S+ L D+I ++ + +GS
Sbjct: 188 HLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGS 240
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 241 DHCPVELVI 249
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 90
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 91 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 148
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 149 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 192
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 193 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 245
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 246 SDHCPVEVVL 255
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 7 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + +E
Sbjct: 51 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIES---- 90
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 91 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 148
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 149 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 192
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 193 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 245
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 246 SDHCPVEVVL 255
>gi|409082189|gb|EKM82547.1| hypothetical protein AGABI1DRAFT_111155 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 326
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 35/233 (15%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 244 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 296
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETSSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 297 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|426200016|gb|EKV49940.1| hypothetical protein AGABI2DRAFT_190373 [Agaricus bisporus var.
bisporus H97]
Length = 326
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 35/233 (15%)
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 244 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 296
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETTSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 297 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 135/310 (43%), Gaps = 68/310 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDD 100
+K ++WN N L +K +F D D LQE +M A K D P +Q
Sbjct: 1 MKLISWNVNGLRAVLKK---DFMTIFNELDADWFCLQETKMQAGQVKLDLPGYYQ----- 52
Query: 101 TKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTAL 159
+++ A+ K Y+GTA+ K +P V++ +
Sbjct: 53 -------------------------YFNYAERKGYSGTAIFTKH--EPLNVTYGM--GIP 83
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + + Q + KPL++
Sbjct: 84 EHDKEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDKDFRAYTNQLAEKKPLVY 141
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNV+HE ID+ + +K + GFT ER F LK G ID
Sbjct: 142 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLKSG-FIDT 185
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R L+ +S WS + RIDYF+ S + + ++ L
Sbjct: 186 FRHLYPNT---VTYSWWSYRFHARANNAGWRIDYFVASSNFQPYVKDAKI------LTDV 236
Query: 338 YGSDHCPVSL 347
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 140/314 (44%), Gaps = 68/314 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F+ + D D I LQE T
Sbjct: 1 MKIISWNVNGVRAVQSKG---FAETLALLDADCILLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA ++ + +AL Y+++ + A+ K Y+G +L +K +P +V + ++
Sbjct: 37 KAQADQ---IDKALEG--IDGYRVYSNCAERKGYSGVTILSRK--EPLQVISDI--GIVE 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPL 216
++ +GRVI+AEFE F+LLN Y PN+G E R+ WD EF+ C KPL
Sbjct: 88 HDREGRVIVAEFENFFLLNVYVPNSG--EALARLDYRQTWDI---EFLAYCRQLQKKKPL 142
Query: 217 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276
I CGD NV+H+EID++ P+ PN G+T E F L G L+
Sbjct: 143 IACGDFNVAHQEIDIARPK------------PNYNK--SAGYTQVEIDGFSRFLDAG-LV 187
Query: 277 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 335
D +R H + +S WS + R RIDY + S+ L + L
Sbjct: 188 DTFRHFHPDT---VAYSWWSFRGGARARNVGWRIDYVLTSKTLAGNV------KQAFILP 238
Query: 336 GFYGSDHCPVSLEL 349
GSDHCPV +E+
Sbjct: 239 EISGSDHCPVGIEI 252
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + +E
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIES---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 61/309 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L V + E N D D+ LQE ++
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFN---ELDADIFCLQETKLQPD---------------- 41
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+L P ++ Y W S Y+GTA+ + +P V+ + ++
Sbjct: 42 ----------QISLELPGYEQY--WNSAVKKGYSGTAVFTR--IKPLSVTNGI--GIEEH 85
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I CG
Sbjct: 86 DQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVILCG 143
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H+EID+ +P+ N+++ GF+ ER + +L G D +R
Sbjct: 144 DLNVAHQEIDLKNPKM------------NRKN---AGFSDEERAKMTELLGAG-FTDTFR 187
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ + + WS + R RIDYFI S+ L D+I ++ + +GS
Sbjct: 188 HLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIFGS 240
Query: 341 DHCPVSLEL 349
DHCPV L +
Sbjct: 241 DHCPVELVI 249
>gi|420236813|ref|ZP_14741290.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
gi|391879916|gb|EIT88416.1| exodeoxyribonuclease [Parascardovia denticolens IPLA 20019]
Length = 277
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 140/322 (43%), Gaps = 61/322 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNF-------ITTFDPDVIALQEVRMPAAGSKDAPKNH 94
+KFVTWN +SL + + E S I P V A+QE ++PAAG P
Sbjct: 1 MKFVTWNIDSLNAALTGD-SERSRLSRQVLHDIAACSPQVFAIQETKLPAAG----PSKK 55
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVK-KCFQPKK 149
Q KAS E F Y+I W A YAGT L + + Q
Sbjct: 56 Q------KASLESI-----------FPGYRIAWRSSQEPARKGYAGTMCLYRPEGGQEVS 98
Query: 150 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
+ + +GR++ EF FYL + Y PN+G + + R+ WD R + ++
Sbjct: 99 PLYPQIGAPEPMDSEGRILTLEFPGFYLTDVYTPNSG--DGLRRLEERQVWDDRYRSYLQ 156
Query: 210 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
KP+I CGD NV+HEEID++HP N+ GFT ER +FG
Sbjct: 157 DLDQVKPVIACGDFNVAHEEIDLAHPA------------SNRR---SAGFTDEERDKFGQ 201
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEM 327
+L G D +R LH + + W+ + K RIDY++VS+ L D++ +
Sbjct: 202 LLDAG-FADTFRRLHPNQAGVYTW-WAQRAVTSKANNSGWRIDYWLVSDRLMDKVRGVSV 259
Query: 328 QGHGIELEGFYGSDHCPVSLEL 349
G DH P+ +E+
Sbjct: 260 MDTGER------RDHAPLVMEI 275
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|406912418|gb|EKD52031.1| hypothetical protein ACD_62C00127G0006 [uncultured bacterium]
Length = 289
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 49/323 (15%)
Query: 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAG-SKDAPKNHQEL 97
+ +K +WN N + +K F ++ + D++ LQE ++ K A + H
Sbjct: 5 RHTIKLSSWNVNGIRACIKKG---FWDWFDKTEADIVCLQETKITQKDFEKIAAEYHLIS 61
Query: 98 KDDTKASREEKLILM--RALSSPPFKNYQIWWSLADSKYAG-TALLVKKCFQPKKVSFSL 154
DT E+++L + S P + ++++LA +K AG + +L+ +P+ V+ L
Sbjct: 62 IADTT---NEQIVLFDNKPSSLVPRSSSIVYYALATAKKAGYSGVLLLSKIKPRSVTIGL 118
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--- 211
+++ +GR I+A ++ F + Y PN G + E R + + EF+LQ
Sbjct: 119 GDP--RFDDEGRTIVAHYDDFVFVGCYFPNGGSELE------RIPYKMQYNEFLLQKLES 170
Query: 212 ---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268
K ++ CGD+NV+H EID+ +P K + GFT ER F
Sbjct: 171 LREEHKHIVVCGDMNVAHTEIDIKNP---------------KANENNSGFTKTERDWFSQ 215
Query: 269 ILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
L + +D +R HK D ++ WS P + RIDYF+V+EE+ R+ + +
Sbjct: 216 FLSH-KYVDVFR--HKNPDARHAYTWWSYRPGVRQNNIGWRIDYFVVTEEMLSRVDSTGI 272
Query: 328 QGHGIELEGFYGSDHCPVSLELS 350
Q + GSDHCPV L ++
Sbjct: 273 QADQM------GSDHCPVHLTIN 289
>gi|377557088|ref|ZP_09786749.1| Exodeoxyribonuclease III [Lactobacillus gastricus PS3]
gi|376166474|gb|EHS85380.1| Exodeoxyribonuclease III [Lactobacillus gastricus PS3]
Length = 278
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 136/324 (41%), Gaps = 67/324 (20%)
Query: 42 LKFVTWNANSL---LLRVKNNWPEFSNFITTF---DPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL L + + + T DPD IA+QE ++ A+G K HQ
Sbjct: 1 MKLISWNIDSLNAALTGTSDRSEQTRAVLKTIAAQDPDTIAIQETKLGASG---LTKKHQ 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
A + F YQ W A YAGT L K + P V+
Sbjct: 58 ------------------AGLAEFFPGYQYVWRSSEEPARKGYAGTLYLYKDEYTPT-VT 98
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFV 208
+ + + +GR+I EF F+L Y PN G N +R R WD R +E++
Sbjct: 99 YPVIDAPSPMDQEGRIITLEFPDFFLTEVYTPNAG-----NGLKRLAEREVWDDRFREYL 153
Query: 209 LQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 267
KP++ GDLNV+HEEID++HP + GFT ER F
Sbjct: 154 QSLDQEKPVLVSGDLNVAHEEIDLAHP---------------GSNHHSAGFTDEERSHFT 198
Query: 268 AILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D +R L+ D ++W + K RIDY++VS L DR+
Sbjct: 199 KLLAAG-FTDTFRQLN--PDAVGKYTWWAQRSLTSKVNNSGWRIDYWLVSNRLADRVTNS 255
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
M G DH P+ LE+
Sbjct: 256 TMLDSGER------RDHTPIMLEI 273
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNINGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 144/320 (45%), Gaps = 59/320 (18%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI GDLNV+ E+DV + K+ Y P ERK F +
Sbjct: 218 IETNKPLILTGDLNVARNELDVFDTK--GKDKVACYTPE-------------ERKSFESF 262
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+ G ID +R L+ +K FS N K K RIDYF+V ++ D + ++
Sbjct: 263 INRG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTI 317
Query: 330 HGIELEGFYGSDHCPVSLEL 349
H + + GSDH PV L L
Sbjct: 318 H----KDYNGSDHVPVCLHL 333
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 67/309 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N + F +F D D+ +QE +M + +P+ +
Sbjct: 1 MKLISWNVNGFRACLTKG---FGDFFAEADADIFCIQETKMQPDQADFSPEGY------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
++ + S Y+GTA+ KK +P V+F + ++
Sbjct: 51 ---------------------HKYFHSAIKKGYSGTAVYTKK--EPLSVTFGING---EH 84
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCG 220
+GRVI E+E FY + Y PN + E R +++ ++ ++ + K P+I+CG
Sbjct: 85 TDEGRVITCEYEDFYFVGCYVPNA--QNELKRIDYRMEFEDAMRGYLSELDKKKPVIYCG 142
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
DLNV+H EID+ +P K + G GF+ ER +F +L G D+YR
Sbjct: 143 DLNVAHNEIDLKNP---------------KSNVGNAGFSDEERGKFTELLAAG-FSDSYR 186
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
L+ EK +SW K R K + RIDYF+VS+ R+ ++ L
Sbjct: 187 SLYPEK---IEYSWWSYRF-KAREKNIGWRIDYFVVSDRFMPRVKDSQI------LTDVT 236
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 237 GSDHCPVQL 245
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 144/320 (45%), Gaps = 59/320 (18%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI GDLNV+ E+DV + K+ Y P ERK F +
Sbjct: 218 IETNKPLILTGDLNVARNELDVFDTK--GKDKVACYTP-------------EERKSFESF 262
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+ G ID +R L+ +K FS N K K RIDYF+V ++ D + ++
Sbjct: 263 INRG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTI 317
Query: 330 HGIELEGFYGSDHCPVSLEL 349
H + + GSDH PV L L
Sbjct: 318 H----KDYNGSDHVPVCLHL 333
>gi|417936679|ref|ZP_12579986.1| exodeoxyribonuclease III [Streptococcus infantis X]
gi|343400195|gb|EGV12715.1| exodeoxyribonuclease III [Streptococcus infantis X]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EVLEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKQK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD NV+H+EID+++P N+ PGFT ER+ F +L +G
Sbjct: 161 PVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLLAKG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHIH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGA 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 62/312 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K V+WN N + VK +F + D DV+ LQE T
Sbjct: 1 MKLVSWNVNGIRAAVKK---DFLQSLAAMDCDVLCLQE---------------------T 36
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
KA E+ ++ AL Y I+ + A K Y+GT+++ + +P V+ + + +
Sbjct: 37 KAQDEQ---VIEALCD--LHGYHIFTNSAVKKGYSGTSVITR--VEPIDVTKDIGIS--E 87
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRV+ AEF FYL+ Y PN+G E R +WD ++ KP++ C
Sbjct: 88 HDQEGRVLCAEFSDFYLVTVYTPNSG--SELKRLGYRGQWDADFLTYIKALEAKKPVVIC 145
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLN +H+++D++ P+ PN G+T E ++ G ID++
Sbjct: 146 GDLNAAHKDLDLARPK------------PNYNK--SAGYTQQEIDGIDNLIAAG-FIDSF 190
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R +H + +SW G + R RIDYF+VS L I E+ + +
Sbjct: 191 RHVHPDT---VKYSWWSYRAGARERNVGWRIDYFLVSSALAANISDAEI------YDDIH 241
Query: 339 GSDHCPVSLELS 350
GSDHCPVS++L+
Sbjct: 242 GSDHCPVSVKLA 253
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FLDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + +E
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKEEALSVRYGLGIET---- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 55/291 (18%)
Query: 63 FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122
I + D D++ LQE + LKD A+ E+ L+R P ++
Sbjct: 1 IGQLINSEDADILCLQETK---------------LKDSDVAACEK---LLR----PGLQD 38
Query: 123 YQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 180
+ ++ S+A Y+G A+L + +P V+ L K ++ +GRVI AE+ +FY++N
Sbjct: 39 WHFYFNNSIAKKGYSGVAVLSRA--KPLSVTNGLGKE--DHDQEGRVITAEYPSFYVVNV 94
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 239
Y PN+G + + R WD +++ KP+I GDLN +H+EID+ P
Sbjct: 95 YVPNSGEGLKRLEY-RVGSWDVAFADYLAGLGAKKPVILTGDLNCAHQEIDIHDP----- 148
Query: 240 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 299
K + GFT ERK F A L + D +R K D+ W+
Sbjct: 149 ----------KRNLKSAGFTEEERKSFSAQLLQRGFKDTFR--EKYPDVVGYTYWNYRTG 196
Query: 300 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI-ELEGFYGSDHCPVSLEL 349
+ R + R+DYF+VSE L +R+ H I L GSDHCPV L L
Sbjct: 197 ARVRNRGWRLDYFLVSEALAERV-------HDIFHLPDVQGSDHCPVGLVL 240
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 146/337 (43%), Gaps = 57/337 (16%)
Query: 14 AKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPD 73
KK SPS + + T+T ++ K LK +WN + +K S + T PD
Sbjct: 35 VKKETESPSDERPDCTQT--QKGKKSCNLKITSWNVAGVRAWIKKG--SLSYLLETEKPD 90
Query: 74 VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK 133
+ LQE + P +ELKD +Q W
Sbjct: 91 IFCLQETK---CSETKIPCELKELKD---------------------YPHQFWAFAKKEG 126
Query: 134 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193
Y+G AL K +P V L+ + ++ +GR+I+AEFE F+LL TY PN G K +
Sbjct: 127 YSGVALFSK--VKPLDVQVGLQ--SQDHDEEGRIIIAEFEFFFLLTTYVPNAGRKLV--T 180
Query: 194 FQRRRKWDKRIQ-EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 252
+R WD ++ + KP+I GDLNV+H EID+++P K +
Sbjct: 181 LDKRLDWDLLLRKKMKELNKKKPVIASGDLNVAHTEIDLANP---------------KTN 225
Query: 253 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 312
GFT ER F +L G +D YR L+ EK F W+ + + R+DYF
Sbjct: 226 QKNAGFTPEERAGFDDLLSLG-FVDTYRKLNPEKTGAYTF-WTYMMNARAKNVGWRLDYF 283
Query: 313 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
++S DR + I GSDHCP+SL L
Sbjct: 284 LIS----DRWFESNVCDSVIR-SKVLGSDHCPISLLL 315
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 144/320 (45%), Gaps = 59/320 (18%)
Query: 35 ENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNH 94
E+ K D L WN N L + N F+ DPD++ E++ K A
Sbjct: 68 EDFKSDQLNIWVWNINGLQAVI--NKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSA---- 121
Query: 95 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSF 152
+ + K+Y+ +W+ + SK Y+GT L+ K +P KV+F
Sbjct: 122 -------------------SFHTKIPKDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTF 160
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +++ +GRVI AEF F L+ Y PN+G S+ R ++WDK +++ +
Sbjct: 161 DI--GIEEHDQEGRVITAEFSKFVLVAVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTR 217
Query: 212 --SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
+ KPLI GDLNV+ E+DV + K+ Y P ERK F +
Sbjct: 218 IETNKPLILTGDLNVARNELDVFDTK--GKDKVACYTP-------------EERKSFESF 262
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+ G ID +R L+ +K FS N K K RIDYF+V ++ D + ++
Sbjct: 263 INRG-YIDTFRHLYPDKREYTYFSARFN--NKVTNKGWRIDYFVVHQD--DINMVTDVTI 317
Query: 330 HGIELEGFYGSDHCPVSLEL 349
H + + GSDH PV L L
Sbjct: 318 H----KDYNGSDHVPVCLHL 333
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III, partial [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 146 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 205
+P KV + + +++ +GRVI EFE FY + Y PN+ + E + R +W+
Sbjct: 3 EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFI 58
Query: 206 EFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 264
+++ + KP+I CGD+NV+H+EID+ +P K + GFT ER+
Sbjct: 59 DYLTKLDNHKPVIVCGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEERE 103
Query: 265 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 324
+F +L G ID YR+ + +K+ + WS + RIDYF S++L+DR+I+
Sbjct: 104 KFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLIS 161
Query: 325 CEMQGHGIELEGFYGSDHCPVSLEL 349
++ + GSDHCPV LE+
Sbjct: 162 ADIHTEVL------GSDHCPVELEI 180
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFIVTCYTPNS--QAELKRLAYRMTWEDAFSAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 146/320 (45%), Gaps = 69/320 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 1 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 46
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P + ++IW S + Y+GTA+ K + F E KY
Sbjct: 47 --------------DLPDY--FEIWNSAERAGYSGTAIFSKAKPLNTWLDFP-EDIVKKY 89
Query: 162 EPD----------GRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQ 210
D GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ +
Sbjct: 90 NLDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKK 147
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A
Sbjct: 148 LESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDAF 192
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
++ G D +R K ++ N + R RIDY++ SE+L ++I E Q
Sbjct: 193 IQSG-FKDTFRIFTKGNGYYSWWTHWAN--ARARNIGWRIDYWLASEKLANKI--TEAQI 247
Query: 330 HGIELEGFYGSDHCPVSLEL 349
H GSDHCPVS+ +
Sbjct: 248 H----PDIMGSDHCPVSVTI 263
>gi|328767146|gb|EGF77197.1| hypothetical protein BATDEDRAFT_20862 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 57/312 (18%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF+ WN L +K + +I D DV+ LQE +M A+ D +
Sbjct: 116 KFIAWNVAGLRASLKK---DMMRYIEAEDADVVCLQETKMNAS------------LDTSM 160
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
SR++ P + +WS +K + ++V +P V + + +A+ +
Sbjct: 161 FSRKQY----------PHQ----YWSHCTTKKGYSGVMVLSKVKPLSVEYKMGHSAI--D 204
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 221
+GR ++ E++ FY + Y N G + +R+ ++++F+ + S KP+IW GD
Sbjct: 205 DEGRFVILEYQDFYYIGCYIMNAG--ADLGRLDLKREHYVKLKKFMGELQSKKPVIWSGD 262
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
LNV+H EID++ P + GFT ER+ FG +L + ++D++R
Sbjct: 263 LNVAHTEIDLARPA---------------TNTKSAGFTPEEREDFGNLLTDLDMVDSFRL 307
Query: 282 LH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
H M +S+ N G R+DYF+VS+ L+D II +++ E + S
Sbjct: 308 KHPTATGMYSYYSFRHNSRANNVG--WRLDYFVVSKALQDDIIEADIRS-----EIYGAS 360
Query: 341 DHCPVSLELSEA 352
DH P+ L L+ +
Sbjct: 361 DHVPILLLLNRS 372
>gi|312866373|ref|ZP_07726591.1| exodeoxyribonuclease III [Streptococcus downei F0415]
gi|311098067|gb|EFQ56293.1| exodeoxyribonuclease III [Streptococcus downei F0415]
Length = 276
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 60/321 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRQVIDSLVEQDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L +D F +YQI W A YAGT L K ++
Sbjct: 58 ALLEDY------------------FPDYQIAWRSSVEPARKGYAGTMFLYKNSLPEPTIT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD++ ++++
Sbjct: 100 YPEIDAPSTMDDEGRIITLEFDKFFVTQVYTPNAG--DGLRRLEERQIWDQKYADYLVGL 157
Query: 212 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 158 DQQKPVLASGDYNVAHKEIDLANPT------------SNRR---SPGFTDEERQGFTNLL 202
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R++H D+ +SW + K RIDY++ S + D+I +M
Sbjct: 203 DKG-FTDTFRYMH--GDIPNVYSWWAQRSKTSKINNTGWRIDYWLTSNRIADKISKSDMI 259
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 260 DSGSR------QDHGPILLEI 274
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 63/310 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L VK N F + D D LQE ++ A G D
Sbjct: 1 MKCISWNVNGLRAVVKKN---FMDVFNELDADFFCLQETKLQA-GQID------------ 44
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
L P + Y W+ A+ K Y+GTA+ K+ + V + L A
Sbjct: 45 -------------LELPGYHQY---WNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA-- 84
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 219
++ +GRVI E+ F+++ Y PN+ + E R W+ ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFIVTCYTPNS--QAELKRLAYRMTWEDAFSAYLNELNQEKPVILC 142
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+ ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQNIDLKNW---------------KTNQKNAGFTPEERQKFTDLLDSG-FTDTF 186
Query: 280 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 340 SDHCPVSLEL 349
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 119 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 175
PF+ NY +W+ A+ K Y+GTA+ K ++P+ V + + + ++ +GR+I E+ F
Sbjct: 44 PFQIPNYYQYWNYAEKKGYSGTAIFTK--YKPENVIYGMNNSI--FDKEGRLITLEYPNF 99
Query: 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 234
YL++ Y P +G E+ R WD+ ++V S KP+I GD++V+++ ID++ P
Sbjct: 100 YLIDVYVPVSG--EKLQHLDYRLDWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEP 157
Query: 235 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS- 293
ED + GFT ER FG +L G L D +R+LH ++ ++
Sbjct: 158 ---------------TEDHHKAGFTKQERSDFGKLLDAG-LTDTFRYLH--PNLHGAYTW 199
Query: 294 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 347
WS + R R+DYF+VS+ K+RI ++ L GS HCP+ L
Sbjct: 200 WSYRYDARERNVGWRLDYFLVSDVWKERIEEAKI------LSDVKGSSHCPIEL 247
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 147/322 (45%), Gaps = 73/322 (22%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
++ +WN N + +K F FI+ + PD++ LQE + A KN E+
Sbjct: 3 MRLYSWNVNGIRAVIKKG--TFLPFISEYQPDILCLQETK--------AKKNQVEI---- 48
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
P + ++IW S + Y+GTA+ K + F E KY
Sbjct: 49 --------------DLPDY--FEIWNSAERAGYSGTAIFSKAKPLNTWLDFP-EDIVKKY 91
Query: 162 EPD----------GRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQ 210
D GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ +
Sbjct: 92 NLDQDDYGNPNNEGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKK 149
Query: 211 C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269
S KP+++CGDLNV+H E D+++P+ PN G+ GFT ER F A
Sbjct: 150 LESIKPVLFCGDLNVAHTEDDLANPK------------PNI---GKHGFTNEERAGFDAF 194
Query: 270 LKEGRLIDAYRFLHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 327
++ G D +R K G+ W+ + R RIDY++ SE+L ++I E
Sbjct: 195 IQSG-FKDTFRIFTKGN----GYYSWWTHWANARARNIGWRIDYWLASEKLANKI--TEA 247
Query: 328 QGHGIELEGFYGSDHCPVSLEL 349
Q H GSDHCPVS+ +
Sbjct: 248 QIH----PDIMGSDHCPVSVTI 265
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 139/311 (44%), Gaps = 57/311 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K +WN N + R + ++ DVI L E++ A
Sbjct: 87 VKIASWNVNGI--RAATKREQAVKYLQDTKFDVICLNELKADQA---------------- 128
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
+ L + K+Y ++ + +K Y+G A+ K K +S +
Sbjct: 129 -------VFDKENLGAQFGKHYFLYLNFCKNKGGYSGVAIASK----VKPISVKCDIGIS 177
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 218
K++ +GR + AE+E FYL+ Y PN G K E + R ++WD Q ++ KP I
Sbjct: 178 KHDQEGRTLTAEYERFYLVACYVPNAGQKLERLDY-RTKEWDVDFQNYLEDLRKKKPTIL 236
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
CGDLNVSH EID+++P NK+ GFT ER +F L++G +D+
Sbjct: 237 CGDLNVSHHEIDLANP------------AGNKK---TAGFTQEERDQFTNYLQKG-WVDS 280
Query: 279 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
+R LH ++ FS N K K R+DYFI+++E D II ++
Sbjct: 281 FRHLHPKEVKYSYFSARFNS--KQSNKGWRLDYFIINKESTDAIIMSDIN------TAVE 332
Query: 339 GSDHCPVSLEL 349
GSDH P+ E+
Sbjct: 333 GSDHVPIECEV 343
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 142/311 (45%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + ++ D++ LQE ++ D
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETKADILCLQETKVQ----------------DG 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ S + + Y +W+ A K Y+GTA+ K+ +P V + L
Sbjct: 43 QVSLQ-------------LEGYHDYWNYAVKKGYSGTAVFSKE--KPLHVFYGLGID--D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE +++N Y PN K R +W+ +E++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDRKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNTG-FTDSF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ D + G+S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDREGGYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI------CADIM 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV + +
Sbjct: 240 GSDHCPVEMTV 250
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 68/312 (21%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + DV+ QE ++ A G +++
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQAKGYENS----------- 285
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTAL 159
+W+ + SK Y+GTA++ + +P VS+ L
Sbjct: 286 ------------------------FWTCSHSKLGYSGTAIVSR--VKPLSVSYGL--GIA 317
Query: 160 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 218
++ +GR++ AEF++FYLLN Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 318 DHDSEGRLVTAEFDSFYLLNAYVPNSGDGLKRLSY-RVSQWDLSLSNYMKELEKSKPVIL 376
Query: 219 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278
GDLN +H+EID+ +P A + N GFT ER+ F +D+
Sbjct: 377 NGDLNCAHQEIDIYNP---AGNRRNA------------GFTDEERQSFETNFLSRGFVDS 421
Query: 279 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 337
+R H + G++ W G+ K R+DYF+VSE + D++ + +
Sbjct: 422 FRKQHPDV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHDSYI------VPDV 472
Query: 338 YGSDHCPVSLEL 349
GSDHCP+ L L
Sbjct: 473 TGSDHCPIGLVL 484
>gi|357236053|ref|ZP_09123396.1| putative Exodeoxyribonuclease [Streptococcus criceti HS-6]
gi|356884035|gb|EHI74235.1| putative Exodeoxyribonuclease [Streptococcus criceti HS-6]
Length = 276
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ + + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRQVIDTLIAQDADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVS 151
L +D F +YQI W A YAGT L K ++
Sbjct: 58 TLLEDY------------------FPDYQITWRSSVEPARKGYAGTMFLYKANLPKPIIT 99
Query: 152 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 211
+ + +GR+I EF+ F++ Y PN G + + R+ WD + E++ Q
Sbjct: 100 YPEIDAPSTMDKEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEERQLWDIKYAEYLAQL 157
Query: 212 SG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270
KP++ GD NV+H+EID+++P N+ PGFT ER+ F +L
Sbjct: 158 DDQKPVLASGDYNVAHKEIDLANPS------------SNRR---SPGFTDEEREGFTNLL 202
Query: 271 KEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 328
+G D +R+ H D+ ++W + K RIDY++ S + D+II +M
Sbjct: 203 AKG-FTDTFRYKH--GDIPNVYTWWAQRSRTSKINNTGWRIDYWLTSTRIADKIIKSDMI 259
Query: 329 GHGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 260 DSGDR------QDHGPILLEI 274
>gi|406659471|ref|ZP_11067609.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
gi|405577580|gb|EKB51728.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 140/320 (43%), Gaps = 59/320 (18%)
Query: 42 LKFVTWNANSLLLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + P + + D D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVAHDADIIAIQETKLSATGPS---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSF 152
E D+ P + N +W S A YAGT L K+ PK VSF
Sbjct: 58 EALDN---------------YFPGYHN--VWRSSIEPARKGYAGTLFLYKENLTPK-VSF 99
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
+ +GR+I EF+ +++ Y PN G + + R+ WD ++++
Sbjct: 100 PEIGAPTTMDSEGRIITLEFDDYFVTQVYTPNAG--DALKRLEDRQAWDIAYANYLVKLD 157
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GD NV+HEEID+++P N+ GFT ER+ F +L
Sbjct: 158 QQKPVLATGDYNVAHEEIDLANP------------ASNRR---SAGFTDEERQGFTNLLS 202
Query: 272 EGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 329
+G D +R LH ++ ++W + K RIDY++ S L D+II EM
Sbjct: 203 KG-FTDTFRHLH--GNIPNVYTWWAQRSKTSKINNTGWRIDYWLTSNRLADKIIRSEMID 259
Query: 330 HGIELEGFYGSDHCPVSLEL 349
G DH P+ LE+
Sbjct: 260 SGSR------QDHTPILLEI 273
>gi|421185556|ref|ZP_15642955.1| exonuclease III [Oenococcus oeni AWRIB418]
gi|399968819|gb|EJO03250.1| exonuclease III [Oenococcus oeni AWRIB418]
Length = 273
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 55/317 (17%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD------PDVIALQEVRMPAAGSKDAPKNHQ 95
+ F++WN +SL +++ P T + PD ++QE ++P G
Sbjct: 1 MNFISWNIDSLNAAIQHKSPRGELTYKTLEKIAAAKPDFFSIQETKLPENGL-------N 53
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
+ +D+ + S+PP A YAG L K+ P +
Sbjct: 54 KKQDEVLEELFPNYLRFVKNSTPP----------AKKGYAGVMTLAKEA--PISYDKPVI 101
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 214
+ +GR++ E+ FYLLN Y PN+G + R KWD + + ++ S K
Sbjct: 102 DAPDTMDQEGRIVTLEYPDFYLLNVYTPNSG--DGLRRLPERGKWDDQFRHYISDLSERK 159
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
+I+ GDLNV+HEEID+ + + + GFT ER++F +L G
Sbjct: 160 IVIFSGDLNVAHEEIDLKN---------------SSSNHNSAGFTDQEREKFSRLLSAG- 203
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
ID +R H + + +SW N + K RIDY+IVS KD+I+ M G
Sbjct: 204 FIDTWRLQHPK---EIAYSWWSQRNRLAKTNNAGWRIDYYIVSNSAKDKIVKTGMIDTGT 260
Query: 333 ELEGFYGSDHCPVSLEL 349
+DH P+ L++
Sbjct: 261 R------ADHAPIYLQM 271
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 64/311 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L +K + + ++ + D++ LQE ++ D
Sbjct: 1 MKLISWNVNGLRAVMKK--IDINTYVQETEADILCLQETKVQ----------------DG 42
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
+ S + + Y +W+ A K Y+GTA+ K+ +P V + L
Sbjct: 43 QVSLQ-------------LEGYHAYWNYAVKKGYSGTAVFSKE--KPLHVFYGLGID--D 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 219
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSF 187
Query: 280 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIM 239
Query: 339 GSDHCPVSLEL 349
GSDHCPV + L
Sbjct: 240 GSDHCPVEMTL 250
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 136/308 (44%), Gaps = 64/308 (20%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTK 102
KF++WN N L VKN + + D IALQE K D+
Sbjct: 4 KFLSWNVNGLRAAVKNG---AVSVLKQDDYFGIALQET-----------------KADST 43
Query: 103 ASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 162
+ EE L L + P K Y+GT LV++ +P VS+ E
Sbjct: 44 SVPEEMYHLGYHLYNNPAKK---------KGYSGTMSLVRE--KPIAVSYGFEN------ 86
Query: 163 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGD 221
+GR++ EF+ FY +N Y PN + + + ++ E+ + KPLI CGD
Sbjct: 87 EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFGEKFLEYSNELRKKKPLIICGD 144
Query: 222 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 281
NV+HEEID++ P K++ GFT ER L G +D YR
Sbjct: 145 FNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRI 188
Query: 282 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 341
KE +S+ N K G RIDYF+VS++++DR+ E+ LE GSD
Sbjct: 189 FMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSD 240
Query: 342 HCPVSLEL 349
H PV+LE+
Sbjct: 241 HAPVTLEV 248
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 58/309 (18%)
Query: 65 NFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQ 124
+FI PD++ LQE + +L D+ + K Y
Sbjct: 44 DFIEHEQPDILCLQETKC----------TEDQLPDEARH----------------IKGYH 77
Query: 125 IWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
+W YAG A+ +K P VS+ L + + DGR++ AE+E FYL+ Y PN
Sbjct: 78 PYWLCKPGGYAGVAIYSRK--MPIHVSYGLGDE--EQDQDGRLLTAEYEKFYLVCVYVPN 133
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G K + +R +WD++ +++ + S KP+I CGD+NV+HEEID+++P+
Sbjct: 134 AGNKLV--TLPKRMRWDEKFHQYLRELDSKKPVILCGDMNVAHEEIDLANPK-------- 183
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER +L G +D +R L+ ++ F W+ +G R
Sbjct: 184 ----TNKKN---AGFTQEERDGLSKLLSFG-FVDTFRQLYPDRKAAYSF-WTY--MGGAR 232
Query: 304 GKRM--RIDYFIVSEELKDRIIACEMQGHGIELE----GFYGSDHCPVSLELSEASSDSE 357
K + R+DYFIVS+ D++ M H G G ++ V ++L S + E
Sbjct: 233 AKNVGWRLDYFIVSQRFTDKVTDNVMAEHSASPTAPHGGAPGEEYGGVFIDLHFLSEEEE 292
Query: 358 KREKKNLDE 366
+ LDE
Sbjct: 293 TDLIRTLDE 301
>gi|419778678|ref|ZP_14304565.1| exodeoxyribonuclease III [Streptococcus oralis SK10]
gi|383187100|gb|EIC79559.1| exodeoxyribonuclease III [Streptococcus oralis SK10]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 140/317 (44%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + T + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVTENADIIAIQETKLSAKGPT---KKHL 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFLGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPA-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q K
Sbjct: 103 GAPSTMDLEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKEK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD NV+H+EID+++P N+ PGFT ER F +L G
Sbjct: 161 PVLATGDYNVAHKEIDLANP------------ASNRR---SPGFTDEERAGFTNLLATG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHIH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGA 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 135/324 (41%), Gaps = 76/324 (23%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSK-DAPKNHQELKDDT 101
K +WN N L +K + P F + + D DVIALQE ++ + D P HQ
Sbjct: 11 KLASWNVNGLRAVLKKD-PSFIDIVHQLDADVIALQETKLQEGQVEIDLPGYHQV----- 64
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
WS A K Y+GTA+ + +P V +
Sbjct: 65 -------------------------WSYAQRKGYSGTAVFTR--VEPLSVRHADSLLPFA 97
Query: 161 YE-----------PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 209
E +GRV EF+ F+ ++ Y PN + E R WD + F+
Sbjct: 98 GEGEAAELLAVAATEGRVCALEFDRFWFVDVYTPNA--QNELARIDTRMAWDDAYRAFLK 155
Query: 210 QC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+GKP+I CGD NV+H EID+ +P K + G GF+ ER +F
Sbjct: 156 SLEDETGKPVITCGDFNVAHNEIDLKNP---------------KSNRGNAGFSDEERSKF 200
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 325
+L G D +R L+ D++ +S WS + RIDYF+VS+ + +
Sbjct: 201 TELLDAG-FTDTWRSLN--PDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDA 257
Query: 326 EMQGHGIELEGFYGSDHCPVSLEL 349
++ +GSDHCPV LE+
Sbjct: 258 RIRND------IFGSDHCPVELEI 275
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 182
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 475 YHPYWLCMPGGYAGVAIYSK--IMPINVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 530
Query: 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 241
PN+G K + + R +W+K +V + K ++ CGD+NVSH EID+ +P
Sbjct: 531 PNSGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENP------- 581
Query: 242 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 301
K + GFT ER + +L G +D +R L+ +K + W+ +
Sbjct: 582 --------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLYPDKKGAYTY-WTYMSNAR 631
Query: 302 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R R+DY IVSE R++ H I + GSDHCP+++ L+
Sbjct: 632 ARNVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHCPITVFLN 674
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,111,678,252
Number of Sequences: 23463169
Number of extensions: 268253611
Number of successful extensions: 634584
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 3305
Number of HSP's that attempted gapping in prelim test: 624865
Number of HSP's gapped (non-prelim): 5234
length of query: 366
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 222
effective length of database: 8,980,499,031
effective search space: 1993670784882
effective search space used: 1993670784882
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)