BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017771
(366 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVLVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -----NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 275
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 276 NVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 62/347 (17%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
K EKE + + P L D +T+ + K LK +WN + L +K + +
Sbjct: 30 KKTEKEAAGEGPVLYEDPPDQKTSASG-----KSATLKICSWNVDGLRAWIKK---KGLD 81
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQI 125
++ PD++ LQE + P QEL P +Q
Sbjct: 82 WVKEEAPDILCLQETK---CSENKLPAELQEL---------------------PGLTHQY 117
Query: 126 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 184
W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L+ Y PN
Sbjct: 118 WSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFILVTAYVPN 173
Query: 185 NGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 243
G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 AG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG------- 224
Query: 244 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 303
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -----NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSK 275
Query: 304 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 276 NVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 149/316 (47%), Gaps = 58/316 (18%)
Query: 34 EENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
E +++ +K ++WN + F+ ++ +PDV+ LQE ++ N
Sbjct: 97 EPKVEENQMKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKI----------N 143
Query: 94 HQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 152
+K D K Y+ + AD K + GT +L KK +P ++F
Sbjct: 144 PSNIKKDQMP-----------------KGYEYHFIEADQKGHHGTGVLTKK--KPNAITF 184
Query: 153 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 212
+ K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 185 GI--GIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLN 242
Query: 213 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L+
Sbjct: 243 ATKPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLE 287
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
+G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I
Sbjct: 288 KG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTS 345
Query: 332 IELEGFYGSDHCPVSL 347
+ GSDHCP+ +
Sbjct: 346 V-----MGSDHCPIGV 356
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P ++Q W +
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------- 225
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 --NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 166/345 (48%), Gaps = 64/345 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
+KE + + PAL D +T+ + K LK +WN + L +K + +++
Sbjct: 34 DKEAAGEGPALYEDPPDQKTSPSG-----KPATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE + P QEL P +YQ +WS
Sbjct: 86 EEAPDILCLQETK---CSENKLPAELQEL---------------------PGLSYQ-YWS 120
Query: 129 LADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186
K Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+ Y PN G
Sbjct: 121 APXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTAYVPNAG 176
Query: 187 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 245
+ R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 --RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG--------- 225
Query: 246 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 305
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 226 ---NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNV 278
Query: 306 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 279 GWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 168/344 (48%), Gaps = 62/344 (18%)
Query: 9 EKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT 68
EKE + L D +T+ + K LK +WN + L +K + +++
Sbjct: 34 EKEAVGEGAVLYEDPPDQKTSPSG-----KSATLKICSWNVDGLRAWIKK---KGLDWVK 85
Query: 69 TFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWS 128
PD++ LQE TK S + + ++ LS ++Q W +
Sbjct: 86 EEAPDILCLQE---------------------TKCSENKLPVELQELSG---LSHQYWSA 121
Query: 129 LADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 187
+D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++ F L+ Y PN G
Sbjct: 122 PSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYDAFVLVTAYVPNAG- 176
Query: 188 KEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 246
+ R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 177 -RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK----------- 224
Query: 247 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
NK++ GFT ER+ FG +L+ L D++R L+ F W+ + +
Sbjct: 225 -GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVG 279
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350
R+DYF++S+ + + +++ + GSDHCP++L L+
Sbjct: 280 WRLDYFLLSQSVLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 64/309 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+K ++WN N L R +F +++ D D+I LQE ++ P++
Sbjct: 1 MKLISWNVNGL--RAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPED-------- 50
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALK 160
Y ++W+ A K Y+GTA+ K+ +P +V + + +
Sbjct: 51 ---------------------YHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEE 85
Query: 161 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 219
++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I C
Sbjct: 86 HDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILC 143
Query: 220 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279
GDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D++
Sbjct: 144 GDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDSF 187
Query: 280 RFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 338
R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 188 R--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------ 239
Query: 339 GSDHCPVSL 347
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 152/319 (47%), Gaps = 71/319 (22%)
Query: 42 LKFVTWNANSL--LLRVKN----NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K +TWN N L LL+ ++ + NF D++ LQE ++ KD + +
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQLAQRENF------DILCLQETKLQV---KDVEEIKK 326
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFS 153
L D S +WS + SK Y+GTA++ + +P V +
Sbjct: 327 TLIDGYDHS---------------------FWSCSVSKLGYSGTAIISR--IKPLSVRYG 363
Query: 154 LEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 211
T L ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + +
Sbjct: 364 ---TGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELE 419
Query: 212 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271
KP++ GDLN +HEEID+ +P NK GFTI ER+ FGA L
Sbjct: 420 KSKPVVLTGDLNCAHEEIDIFNP------------AGNKRS---AGFTIEERQSFGANLL 464
Query: 272 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
+ +D +R K+ G++ W G+ K R+DYF+VS+ IA +
Sbjct: 465 DKGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDS 516
Query: 331 GIELEGFYGSDHCPVSLEL 349
I L GSDHCP+ L L
Sbjct: 517 YI-LPDINGSDHCPIGLIL 534
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 59/307 (19%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
LK +WN L +K + I +PD+ LQE + N Q ++ T
Sbjct: 427 LKICSWNVAGLRAWLKKDG---LQLIDLEEPDIFCLQETKC---------ANDQLPEEVT 474
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
+ Y +W YAG A+ K P V + + ++
Sbjct: 475 R-----------------LPGYHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EF 513
Query: 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 220
+ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CG
Sbjct: 514 DDVGRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICG 571
Query: 221 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280
D+NVSH ID+ +P K + GFT ER + +L G +D +R
Sbjct: 572 DMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFR 615
Query: 281 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
L+ ++ F W+ + R R+DY +VSE +++ E++ + GS
Sbjct: 616 HLYPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GS 668
Query: 341 DHCPVSL 347
DHCP+++
Sbjct: 669 DHCPITI 675
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 60/324 (18%)
Query: 30 ETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKD 89
E + ++ + +K +WN + L VK N +++ DPD++ LQE
Sbjct: 43 EKLTSKDGRAANMKITSWNVDGLRAWVKKN---GLDWVRKEDPDILCLQE---------- 89
Query: 90 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQP 147
TK + + + + P K +W+ ++ K Y+G A+L K +P
Sbjct: 90 -----------TKCAEKALPADITGMPEYPHK----YWAGSEDKEGYSGVAMLCKT--EP 132
Query: 148 KKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF 207
V++ + K +++ +GRVI AEF F+L+ Y PN R+ WD + +
Sbjct: 133 LNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVPNA--SRGLVRLDYRKTWDVDFRAY 188
Query: 208 VLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 266
+ KPL+ CGDLNV+H+EID+ +P K + GFT ER+ F
Sbjct: 189 LCGLDARKPLVLCGDLNVAHQEIDLKNP---------------KGNRKNAGFTPEEREGF 233
Query: 267 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 326
+L+ G D++R L+ ++ F W+ + + R+DYF++S L + +
Sbjct: 234 TQLLEAG-FTDSFRELYPDQAYAYTF-WTYMMNARSKNVGWRLDYFVLSSALLPGLCDSK 291
Query: 327 MQGHGIELEGFYGSDHCPVSLELS 350
++ + GSDHCP++L L+
Sbjct: 292 IRNTAM------GSDHCPITLFLA 309
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+ F++ Y PN G + + R+ WD + E++ + K
Sbjct: 103 GAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD NV+H EID+++P N+ PGFT ER F +L G
Sbjct: 161 PVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLLATG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGA 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 53/317 (16%)
Query: 42 LKFVTWNANSLLLRVKNNWP------EFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQ 95
+K ++WN +SL + ++ E + + D+IA+QE ++ A G K H
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPT---KKHV 57
Query: 96 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE 155
E+ ++ E R+ P K Y AGT L KK P +SF
Sbjct: 58 EILEELFPGYENT---WRSSQEPARKGY-----------AGTMFLYKKELTPT-ISFPEI 102
Query: 156 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 214
+ +GR+I EF+ F++ Y PN G + + R+ WD + E++ + K
Sbjct: 103 GAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKRLEERQVWDAKYAEYLAELDKEK 160
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 274
P++ GD NV+H EID+++P N+ PGFT ER F +L G
Sbjct: 161 PVLATGDYNVAHNEIDLANP------------ASNRR---SPGFTDEERAGFTNLLATG- 204
Query: 275 LIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 332
D +R +H D+ ++W + K RIDY++ S + D++ +M G
Sbjct: 205 FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGA 262
Query: 333 ELEGFYGSDHCPVSLEL 349
DH P+ LE+
Sbjct: 263 R------QDHTPIVLEI 273
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KF+++N N L R + I + PDVI LQE+++
Sbjct: 1 MKFISFNINGLRARPH----QLEAIIEKYQPDVIGLQEIKV------------------- 37
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
A + L F + Q + G ALL K+ +PK +
Sbjct: 38 -ADEAFPYEITENLGYHVFHHGQ-------KGHYGVALLTKQ--EPKVIRRGFPTD--NE 85
Query: 162 EPDGRVILAEFETFY----LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK--P 215
+ R+I+A+ ET + ++N Y P + E F + K+ +Q+++ + K P
Sbjct: 86 DAQKRIIMADLETEFGLLTVINGYFPQGESRAHETKFPAKEKFYADLQQYLEKEHDKSNP 145
Query: 216 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKE 272
++ GD+N+S ++D+ G N++ W G+ F ER + +
Sbjct: 146 ILIMGDMNISPSDLDI------------GIGDENRKRWLRTGKCSFLPEERAWYQRLYDY 193
Query: 273 GRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 331
G L D++R L+ D F + RG +RID+ +VS++L +R C G
Sbjct: 194 G-LEDSFRKLNPTANDKFSWFDYRSKGFDDNRG--LRIDHILVSQKLAER---CVDVGIA 247
Query: 332 IELEGFYG-SDHCPV 345
+++ SDH P+
Sbjct: 248 LDIRAMEKPSDHAPI 262
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 155 EKTALKYEPDGRVILAEFET-FYLLNTYAPNNGWKEEENSFQRRRKWD---KRIQEFVLQ 210
EK+AL+ + +GR ++ E +++ Y P N EE R R +R++ L
Sbjct: 154 EKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRN--LD 211
Query: 211 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-----------GFT 259
GK ++ GD+NV + ID +A L + P + G F
Sbjct: 212 KIGKKIVLMGDVNVCRDLID-------SADTLEQFSIPITDPMGGTKLEAQYRDKAIQFI 264
Query: 260 I----AERKRFGAIL---------KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 306
I R+ F IL K G LID R + + W+ +
Sbjct: 265 INPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYG 324
Query: 307 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349
RID+ +VS +L+ I A ++ L GSDHCPV +L
Sbjct: 325 SRIDFILVSLKLERCIKAADI------LPDILGSDHCPVYSDL 361
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 155 EKTALKYEPDGRVILAEFETFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSG 213
E AL + R + + +T L+N Y P+ + K E +F+ R +++ L +G
Sbjct: 129 EGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAG 188
Query: 214 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE- 272
+I GDLN +H ID A+ L + +ED G RK +L
Sbjct: 189 SHVIILGDLNTAHRPID-----HCDASSLECF----EEDPG--------RKWMDGLLSNP 231
Query: 273 --------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 322
G +D+YR+LH +++ C WS ++ R+DY L DR
Sbjct: 232 GDEAGPHIGLFMDSYRYLHPKQQRAFTC---WSVVSGARHLNYGSRLDYV-----LGDRA 283
Query: 323 IACEMQGHGIELEGFYGSDHCPVSLELS 350
+ + L GSDHCPV L+
Sbjct: 284 LVIDTFQASFLLPEVMGSDHCPVGAVLN 311
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 125/316 (39%), Gaps = 66/316 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
M L Y +++ Y G ALL K + F +
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE---- 85
Query: 162 EPDGRVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGK 214
E R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C
Sbjct: 86 EAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-N 144
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILK 271
P++ GD+N+S ++D+ G N++ W G+ F ER+ +LK
Sbjct: 145 PVLIMGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMSRLLK 192
Query: 272 EGRLIDAYRFLHKEKDMDCGFSW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
G L+D +R + + MD FSW G + +RID + S L +R C G
Sbjct: 193 WG-LVDTFRQANPQT-MD-KFSWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGI 246
Query: 331 GIELEGFYG-SDHCPV 345
++ SDH PV
Sbjct: 247 DYDIRSMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 125/316 (39%), Gaps = 66/316 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE ++ H E
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETKV-----------HDE----- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
M L Y +++ Y G ALL K + F +
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE---- 85
Query: 162 EPDGRVILAEFET----FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGK 214
E R+I+AE + ++N Y P ++ F + ++ + +Q ++ L+C
Sbjct: 86 EAQRRIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-N 144
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILK 271
P++ GD+N+S ++D+ G N++ W G+ F ER+ +LK
Sbjct: 145 PVLIMGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMSRLLK 192
Query: 272 EGRLIDAYRFLHKEKDMDCGFSW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330
G L+D +R + + MD FSW G + +RID + S L +R C G
Sbjct: 193 WG-LVDTFRQANPQT-MD-KFSWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGI 246
Query: 331 GIELEGFYG-SDHCPV 345
++ SDH PV
Sbjct: 247 DYDIRSMEKPSDHAPV 262
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 129/370 (34%), Gaps = 104/370 (28%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
L+ V+WN N + L V N P + D D++ LQE ++
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKV---------- 51
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF 152
T+ + E L ++ N +S S Y+G A K P
Sbjct: 52 --------TRDALTEPLAIVEGY------NSYFSFSRNRSGYSGVATFCKDNATPVAAEE 97
Query: 153 SL-----------------------EKTALKYEPDGRVILAEFE---------TFYLLNT 180
L E AL E GR +L + + T L+N
Sbjct: 98 GLSGLFATQNGDVGCYGNMDEFTQEELRALDSE--GRALLTQHKIRTWEGKEKTLTLINV 155
Query: 181 YAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 239
Y P+ + + E F+ R +I+ L +G +I GDLN +H ID + A
Sbjct: 156 YCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPID-----HWDA 210
Query: 240 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE---------GRLIDAYRFLH--KEKDM 288
L + +ED G RK ++L G ID+YR +E
Sbjct: 211 VNLECF----EEDPG--------RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAF 258
Query: 289 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 348
C WS ++ R+DY L DR + + L GSDHCPV
Sbjct: 259 TC---WSAVTGARHLNYGSRLDYV-----LGDRTLVIDTFQASFLLPEVMGSDHCPVGAV 310
Query: 349 LSEASSDSEK 358
LS +S +++
Sbjct: 311 LSVSSVPAKQ 320
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 128/365 (35%), Gaps = 104/365 (28%)
Query: 42 LKFVTWNANSL---LLRVKNNWPE------FSNFITTFDPDVIALQEVRMPAAGSKDAPK 92
L+ V+WN N + L V+ P + D D++ LQE
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQE------------- 48
Query: 93 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSF 152
TK +R+ +L L+ N +S S Y+G A K P
Sbjct: 49 --------TKVTRD---VLTEPLAIIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEE 97
Query: 153 SL-----------------------EKTALKYEPDGRVILAEFE---------TFYLLNT 180
L E AL E GR +L + + T L+N
Sbjct: 98 GLSGLLSTQNGDVGCYGNMDDFTQEELRALDSE--GRALLTQHKICTWEGKEKTLTLINV 155
Query: 181 YAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 239
Y P+ + K E +F+ R +I+ L +G +I GDLN +H ID + A
Sbjct: 156 YCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPID-----HWDA 210
Query: 240 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE---------GRLIDAYR-FLHKEKD-M 288
+ + +ED G RK +L G ID+YR F K+K
Sbjct: 211 VNMECF----EEDPG--------RKWMDGLLSNLGCESGSHMGPFIDSYRCFQPKQKGAF 258
Query: 289 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 348
C WS ++ R+DY L DR + + L GSDHCPV
Sbjct: 259 TC---WSTVSGARHLNYGSRLDYV-----LGDRTLVIDTFQSSFLLPEVMGSDHCPVGAV 310
Query: 349 LSEAS 353
LS +S
Sbjct: 311 LSVSS 315
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 121/316 (38%), Gaps = 66/316 (20%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDT 101
+KFV++N N L R + + PDVI LQE + + DD
Sbjct: 1 MKFVSFNINGLRARPH----QLEAIVEKHQPDVIGLQETK---------------VHDD- 40
Query: 102 KASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY 161
M L Y +++ Y G ALL K+ + F +
Sbjct: 41 ----------MFPLEEVAKLGYNVFYHGQKGHY-GVALLTKETPIAVRRGFPGDDE---- 85
Query: 162 EPDGRVILAEFETFY----LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK--- 214
E R+I+AE + ++N Y P ++ F + ++ + +Q + L+ K
Sbjct: 86 EAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNY-LETELKRDN 144
Query: 215 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILK 271
P++ GD+N+S ++D+ G N++ W G+ F ER+ ++
Sbjct: 145 PVLIMGDMNISPTDLDI------------GIGEENRKRWLRTGKCSFLPEEREWMDRLMS 192
Query: 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGH 330
G L+D +R H FSW + R +RID + S+ L + C G
Sbjct: 193 WG-LVDTFR--HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE---CCVETGI 246
Query: 331 GIELEGFYG-SDHCPV 345
E+ SDH PV
Sbjct: 247 DYEIRSMEKPSDHAPV 262
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 145 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 204
F PK + KTA + +GR IL +F+ F L+ Y P N EN + RR + K +
Sbjct: 118 FFPKDID---RKTANWIDSEGRCILLDFQMFILIGVYCPVNS---GENRLEYRRAFYKAL 171
Query: 205 QEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 261
+E + ++ + +I GD+N+ ID + + L + +++ W + +
Sbjct: 172 RERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQ-WIRDLLLPS 230
Query: 262 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 321
I GR+ R + C W+ + RIDY + + +L
Sbjct: 231 RLGLLLDI---GRIQHPTR----KGMFTC---WNTRLNTRPTNYGTRIDYTLATPDLLPW 280
Query: 322 IIACEMQGHGIELEGFYGSDHCPVSLELSE 351
+ ++ + GSDHCPV L+L E
Sbjct: 281 VQDADIMAEVM------GSDHCPVYLDLKE 304
>sp|A6NJ88|SGE1L_HUMAN Putative SAGE1-like protein OS=Homo sapiens PE=5 SV=4
Length = 616
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 44 FVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKN 93
+ T N N +R++NN P+F+N ++T P I + +PA +KDA N
Sbjct: 209 YATINHNVYEVRMENNQPQFNNVLSTVKPGHINMAAAGIPAMSAKDAVVN 258
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 287 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 340
D++C +SW +P+ +R + +D + V +L RI A + +EL F+G+
Sbjct: 798 DLECRYSWDHSPLSMFRHYTIYLDLYAVINDLSSRIEATRLGITALELR-FHGA 850
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 245 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 300
++P N DW Q G T+ GA+L E R++++ R + GFS IG
Sbjct: 4393 HLPANAVDWRQYGITLYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIG 4448
>sp|A7YWI9|TYDP2_BOVIN Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 28 TTETSSEENSKKDPLKFVTWN-----ANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
T+E S + F+TWN N+LL R + +++T + PDVI LQEV
Sbjct: 102 TSEDKSVQQEDGSVFSFITWNIDGLDMNNLLERARG----VCSYLTLYSPDVIFLQEVIP 157
Query: 83 P 83
P
Sbjct: 158 P 158
>sp|Q9JIG7|CCD22_MOUSE Coiled-coil domain-containing protein 22 OS=Mus musculus GN=Ccdc22
PE=1 SV=1
Length = 627
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 46 TWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR 105
TW A R P+ S F T E ++ AA D P Q L+ DT+A++
Sbjct: 278 TWGA-----RAMTGVPKGSRF--THSEKFTFHLEPQVQAAQVADVPATSQRLEQDTRAAQ 330
Query: 106 EEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL-VKKCFQPKKVSFSLEKTALKYE- 162
E++L +R L+S N+ I AD K G L+ V+ + ++S + ++ AL+ +
Sbjct: 331 EQELESLREQLAS---VNHNIEEVEADMKTLGINLVQVETECRQSELSVAEQEQALRLKS 387
Query: 163 ------PDGRVILAEFE 173
PDG LA+ +
Sbjct: 388 RTVELLPDGAANLAKLQ 404
>sp|Q5ZHV8|RMI1_CHICK RecQ-mediated genome instability protein 1 OS=Gallus gallus GN=RMI1
PE=2 SV=1
Length = 627
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 35/153 (22%)
Query: 6 KPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSN 65
KP+E K A + S DG +T S + NS V+ +S ++ +KN E N
Sbjct: 385 KPVEVTSKQKNLARTVSTGDGTSTGGSLQCNS-------VSQACSSAIVLLKNPHEERRN 437
Query: 66 FITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASR-----EEKLILMRA------ 114
PD + Q S+ AP + Q KD +S+ +++ IL R
Sbjct: 438 ---DLGPDESSCQ--------SRHAPDSRQLNKDPVSSSKTDPEADQQAILCRPGNACDL 486
Query: 115 -LSSPPFKNYQIWWSLADSKYAGTALLVK-KCF 145
L SPPF + SL +K T LVK KCF
Sbjct: 487 DLDSPPFT----YISLLLAKKPETITLVKVKCF 515
>sp|O95551|TYDP2_HUMAN Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 25 DGETTETSSEENSKKD---PLKFVTWNANSLLLRVKNNWPE----FSNFITTFDPDVIAL 77
D T++ S E+++++ +TWN + L L NN E +++ + PDVI L
Sbjct: 94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDL---NNLSERARGVCSYLALYSPDVIFL 150
Query: 78 QEVRMP 83
QEV P
Sbjct: 151 QEVIPP 156
>sp|Q28FQ5|TYDP2_XENTR Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2
SV=2
Length = 373
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 19 LSPSKKDGETTETSSEENSKKDPLKFVTWNANSL-LLRVKNNWPEFSNFITTFDPDVIAL 77
L +K + T+ +S+ + + F+TWN + L V +++ + PDV+ L
Sbjct: 102 LVVTKSEATTSNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFL 161
Query: 78 QEVRMP 83
QEV P
Sbjct: 162 QEVIPP 167
>sp|Q9UTK6|YKR3_SCHPO G-patch domain-containing protein C1486.03 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1486.03c PE=3
SV=1
Length = 797
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 269 ILKEGRLIDAYRFLHKEKDM--------DCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 319
IL+EGRL ++R KE+DM + GF SG IG R +R I + SE++K
Sbjct: 20 ILEEGRLRPSFRGQQKERDMLGIFGEEDEDGFHNSG--IGSARLRRKNISFVEKSEQVK 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,335,848
Number of Sequences: 539616
Number of extensions: 6421052
Number of successful extensions: 15665
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 15588
Number of HSP's gapped (non-prelim): 45
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)