Query 017771
Match_columns 366
No_of_seqs 116 out of 1317
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 4.8E-37 1.6E-41 283.5 25.5 257 40-356 2-262 (265)
2 2j63_A AP-endonuclease; base e 100.0 3.6E-36 1.2E-40 298.6 26.6 264 39-351 147-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 1.2E-33 4.3E-38 258.5 27.6 252 42-351 2-257 (257)
4 2o3h_A DNA-(apurinic or apyrim 100.0 2.7E-33 9.3E-38 260.7 28.7 257 36-351 23-285 (285)
5 2jc5_A Exodeoxyribonuclease; h 100.0 9.4E-34 3.2E-38 259.2 24.1 253 42-353 2-258 (259)
6 1hd7_A DNA-(apurinic or apyrim 100.0 6.9E-34 2.4E-38 269.9 24.0 256 37-351 57-318 (318)
7 2jc4_A Exodeoxyribonuclease II 100.0 2.8E-33 9.7E-38 255.6 27.2 253 42-351 1-256 (256)
8 1vyb_A ORF2 contains A reverse 100.0 4.3E-32 1.5E-36 244.8 22.2 230 38-350 4-238 (238)
9 1ako_A Exonuclease III; AP-end 100.0 6E-32 2.1E-36 248.4 23.1 256 42-350 1-267 (268)
10 4gew_A 5'-tyrosyl-DNA phosphod 100.0 4.8E-30 1.6E-34 247.9 18.5 236 34-350 112-361 (362)
11 4fva_A 5'-tyrosyl-DNA phosphod 100.0 1.4E-28 4.7E-33 223.5 22.0 238 36-350 8-255 (256)
12 2ei9_A Non-LTR retrotransposon 100.0 3.4E-29 1.2E-33 228.6 13.8 214 41-354 7-222 (240)
13 1wdu_A TRAS1 ORF2P; four-layer 100.0 2.2E-27 7.5E-32 216.3 22.5 224 38-352 16-244 (245)
14 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.4E-27 4.8E-32 216.6 14.7 240 37-351 5-254 (256)
15 3teb_A Endonuclease/exonucleas 99.9 1.3E-26 4.6E-31 212.4 20.0 252 40-351 2-266 (266)
16 4f1h_A Tyrosyl-DNA phosphodies 99.9 6.8E-27 2.3E-31 209.6 17.3 234 40-350 2-249 (250)
17 3l1w_A Uncharacterized protein 99.9 6.8E-25 2.3E-29 200.6 19.3 231 42-353 1-253 (257)
18 3g6s_A Putative endonuclease/e 99.9 5.1E-25 1.7E-29 202.8 17.9 235 40-353 2-262 (267)
19 3mpr_A Putative endonuclease/e 99.9 1.1E-23 3.8E-28 197.6 17.3 237 39-352 4-290 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 1.1E-23 3.6E-28 197.1 16.0 164 39-228 8-202 (301)
21 2ddr_A Sphingomyelin phosphodi 99.9 4E-22 1.4E-26 186.7 19.8 169 38-229 6-203 (306)
22 3i41_A Beta-hemolysin; beta to 99.9 5.1E-22 1.8E-26 188.2 17.2 168 35-228 23-221 (317)
23 2f1n_A CDT B, cytolethal diste 99.8 3.4E-18 1.2E-22 153.9 16.5 163 39-228 13-192 (262)
24 2a40_B Deoxyribonuclease-1; WA 99.8 6.3E-18 2.1E-22 155.2 18.1 158 42-227 1-174 (260)
25 3ngq_A CCR4-NOT transcription 99.8 1.1E-17 3.7E-22 162.5 18.1 45 39-83 29-87 (398)
26 1sr4_B CDT B, cytolethal diste 99.8 1.3E-17 4.5E-22 151.6 17.2 168 40-226 3-182 (261)
27 4b8c_D Glucose-repressible alc 99.7 9E-19 3.1E-23 183.4 2.2 46 38-83 391-450 (727)
28 2imq_X Salivary nitrophorin; f 99.5 2.1E-14 7.3E-19 133.6 6.8 160 37-227 4-177 (282)
29 1i9z_A Synaptojanin, phosphati 99.5 8.6E-13 3E-17 125.8 15.1 162 40-225 25-211 (347)
30 2xsw_A 72 kDa inositol polypho 99.3 3.9E-11 1.3E-15 114.7 12.9 152 39-227 25-210 (357)
31 3mtc_A Type II inositol-1,4,5- 99.0 6.6E-09 2.3E-13 96.9 16.0 158 41-227 9-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.6 2.9E-07 9.9E-12 86.0 12.0 152 41-226 9-196 (316)
33 3p8k_A Hydrolase, carbon-nitro 27.4 37 0.0013 30.1 3.1 47 37-85 16-67 (281)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=4.8e-37 Score=283.53 Aligned_cols=257 Identities=27% Similarity=0.528 Sum_probs=197.4
Q ss_pred CCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 017771 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (366)
..|||+||||+|++...++ .+.++|+.++|||||||||+.....+. ..+. .
T Consensus 2 ~~l~i~s~Nv~g~~~~~~~---~l~~~i~~~~~DIv~LQEt~~~~~~~~------------------------~~~~--~ 52 (265)
T 3g91_A 2 AVLKIISWNVNGLRAVHRK---GFLKWFMEEKPDILCLQEIKAAPEQLP------------------------RKLR--H 52 (265)
T ss_dssp CEEEEEEEECSCHHHHHHH---THHHHHHHHCCSEEEEECCCSCGGGSC------------------------HHHH--C
T ss_pred CccEEEEEEcCCchhhhhh---hHHHHHHhcCCCEEEEEeccccccccC------------------------hhhh--c
Confidence 3599999999999876542 599999999999999999987754221 0010 1
Q ss_pred CCCceEEEecC-CCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhhHHHHH
Q 017771 120 FKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 198 (366)
Q Consensus 120 ~~~y~~~~~~~-~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~~~~r~ 198 (366)
..||..++... ..++.||+||+|.++ ..+..++. ....+.++|++.++...+.|+|+|+|+..... .++.+|.
T Consensus 53 ~~gy~~~~~~~~~~~~~Gvail~k~~~--~~~~~~~~--~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~~--~~~~~r~ 126 (265)
T 3g91_A 53 VEGYRSFFTPAERKGYSGVAMYTKVPP--SSLREGFG--VERFDTEGRIQIADFDDFLLYNIYFPNGAMSE--ERLKYKL 126 (265)
T ss_dssp CTTCEEEEECBSSTTSCCEEEEESSCC--SEEECCCS--CHHHHSBSCEEEEECSSCEEEEEECCCCTTCH--HHHHHHH
T ss_pred ccCCcEEEccCCCCCcCEEEEEEecCh--HHhccCCC--CcccCCcCCEEEEEeCCEEEEEEEecCCCCCc--hhHHHHH
Confidence 27998776654 345789999999975 33334333 12234578999999999999999999988643 3566688
Q ss_pred HHHHHHHHHHHhc--CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCee
Q 017771 199 KWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 276 (366)
Q Consensus 199 ~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 276 (366)
+|++.|.+++.+. .+.++|||||||+.+.+.|..++.. +.+..++.+.++..|..+++. +|+
T Consensus 127 ~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~-gl~ 190 (265)
T 3g91_A 127 EFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKE---------------NSNVSGFLPVERAWIDKFIEN-GYV 190 (265)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGG---------------GTTSTTSCHHHHHHHHHHHHT-TEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhh---------------cCCCCccCHHHHHHHHHHHhc-CcE
Confidence 8888898888754 4799999999999998888766542 235678899999999999954 599
Q ss_pred eeeecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEeccCCCc
Q 017771 277 DAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSD 355 (366)
Q Consensus 277 D~~~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~~~~~ 355 (366)
|+|+.++|.. ..|||++.....+ .+.+.||||||+++.+...+.++.+... ..+|||+||++++.....+
T Consensus 191 D~~r~~~p~~---~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~------~~~SDH~Pv~~~~~~~~~~ 261 (265)
T 3g91_A 191 DTFRMFNSDP---GQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSD------VMGSDHCPIGLEIELLEHH 261 (265)
T ss_dssp ETHHHHCCCS---CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEECCCCC
T ss_pred EeeHhhCCCC---CCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCC------CCCCCcceEEEEhhhhhhc
Confidence 9999999876 6899987665443 4567899999999999888999999763 3579999999999876544
Q ss_pred h
Q 017771 356 S 356 (366)
Q Consensus 356 ~ 356 (366)
.
T Consensus 262 ~ 262 (265)
T 3g91_A 262 H 262 (265)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=3.6e-36 Score=298.62 Aligned_cols=264 Identities=26% Similarity=0.403 Sum_probs=189.7
Q ss_pred CCCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 017771 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (366)
...|||+||||+|++...++++..+.++|+.++||||||||++.....+. . .+.|.
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~---------------------~-~~~la-- 202 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEAD---------------------A-NATLG-- 202 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHH---------------------H-HHTSS--
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccc---------------------h-HHHHh--
Confidence 45699999999998876544345799999999999999999987643110 0 01121
Q ss_pred CCCCceEEEec--CCCCcceEEEEEecCCCcc----eeeeccccc---------------ccCCCCCCCEEEEEe-----
Q 017771 119 PFKNYQIWWSL--ADSKYAGTALLVKKCFQPK----KVSFSLEKT---------------ALKYEPDGRVILAEF----- 172 (366)
Q Consensus 119 ~~~~y~~~~~~--~~~~~~Gvailsr~~i~~~----~~~~~~~~~---------------~~~~~~~~r~i~~~~----- 172 (366)
...||.+++.. +..++.|||||+|+++.+. ....++... ....+.++|++.+++
T Consensus 203 ~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~ 282 (467)
T 2j63_A 203 VVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPD 282 (467)
T ss_dssp CCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCC
T ss_pred hcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCc
Confidence 12689877664 2445789999999987311 122233210 012456899998887
Q ss_pred -----CCEEEEEEeecCCCCcchhhhHHHHH-HHHHHHHHHHHhc--------------------CCCCEEEEccCCccC
Q 017771 173 -----ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSH 226 (366)
Q Consensus 173 -----~~l~v~nvh~~~~~~~~~~~~~~~r~-~~~~~l~~~l~~~--------------------~~~p~Il~GDFN~~~ 226 (366)
..|.|+|+|+|+.....+ ++.+|. .|++.|.+++.+. ...|+|||||||+.+
T Consensus 283 ~~~~~~~~~vinvYlP~~~~~~~--r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p 360 (467)
T 2j63_A 283 SASSSSRIALVNTYVANSGMGLT--RLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAE 360 (467)
T ss_dssp C----CCEEEEEEECCCCCTTST--THHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCC
T ss_pred ccccCceEEEEEEECCCCCcchH--HHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCC
Confidence 579999999999875433 344444 3545555555432 357999999999999
Q ss_pred CcCcCcC---hhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCeeeeeecccCCCCCCcceeecCCCCCCC-
Q 017771 227 EEIDVSH---PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY- 302 (366)
Q Consensus 227 ~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~- 302 (366)
.+.|..+ +.. +.+..+|.+.++.+|..++...+|+|+||.++|... +.|||+++....+
T Consensus 361 ~~~D~~~~~~~~~---------------~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~--~~yTw~s~r~~~~~ 423 (467)
T 2j63_A 361 RDYDRYYAGTFKS---------------MQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG--PVYSFWSQRINGRP 423 (467)
T ss_dssp STTSBCCCSCHHH---------------HTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBC--SCCSBCCTTTTTTT
T ss_pred chhhhccccchhh---------------cccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCC--CCccccCCCCCccc
Confidence 8888765 321 124578899999999998866669999999988642 5699998765443
Q ss_pred CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEecc
Q 017771 303 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351 (366)
Q Consensus 303 ~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~ 351 (366)
.+.+.||||||+++.+...+.++.|... ..+|||+||+++|.+
T Consensus 424 ~n~g~RIDyIlvS~~l~~~v~~~~I~~~------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 424 RNLGWRLDYFVVSSRLASYVVDCFPMPT------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp TTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEEC
T ss_pred CCCCceeEEEEEcHHHHcceeEEEECCC------CCCCCcccEEEEEEc
Confidence 4567999999999999888899998753 368999999999975
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-33 Score=258.52 Aligned_cols=252 Identities=23% Similarity=0.376 Sum_probs=180.6
Q ss_pred cEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 017771 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (366)
|||+||||+|++.+. ..+.++|+.++||||||||++.....+. . ..+. ..
T Consensus 2 lrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~----------~-------------~~~~---~~ 51 (257)
T 2voa_A 2 LKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFP----------E-------------ADFH---RI 51 (257)
T ss_dssp EEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCC----------H-------------HHHH---TT
T ss_pred eEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcC----------H-------------HHhh---hC
Confidence 899999999987554 5799999999999999999986542111 0 0010 16
Q ss_pred CceEEEecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhhHHHHHHHH
Q 017771 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (366)
Q Consensus 122 ~y~~~~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~~ 201 (366)
||.+++.. ..++.|++||||.++.. +...++. ...+ ++|++.+++..+.|+|+|+|+...... .++.+|.+|+
T Consensus 52 gy~~~~~~-~~~~~G~ailsr~~~~~--~~~~~~~--~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~-~~~~~r~~~~ 124 (257)
T 2voa_A 52 GYHVVFSG-SKGRNGVAIASLEEPED--VSFGLDS--EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDS-EKYQYKLQWL 124 (257)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCEE--EEESCSS--SSCC-GGGEEEEEETTEEEEEEECCCCSCTTS-HHHHHHHHHH
T ss_pred CCcEEEcC-CCCccEEEEEEccChHH--heecCCC--Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCc-HHHHHHHHHH
Confidence 88876653 44567999999997632 2233432 1123 678888888999999999998764211 2344566778
Q ss_pred HHHHHHHHhc--CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCeeeee
Q 017771 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279 (366)
Q Consensus 202 ~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~ 279 (366)
+.|.+++.+. .+.|+|||||||+.+.+.|..++..| .+..++++.++..+..+++. +|.|+|
T Consensus 125 ~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~-~l~D~~ 188 (257)
T 2voa_A 125 ERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKL---------------KNHVCFHEDARRAYKKILEL-GFVDVL 188 (257)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGC---------------TTSTTTCHHHHHHHHHHHTT-TCEEHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHh---------------CCCCCCCHHHHHHHHHHHHc-CcEeee
Confidence 8888888653 67899999999998887776554321 13457778888888888864 599999
Q ss_pred ecccCCCCCCcceeecCC-CCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEecc
Q 017771 280 RFLHKEKDMDCGFSWSGN-PIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351 (366)
Q Consensus 280 ~~~~p~~~~~~~~T~~~~-~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~ 351 (366)
+..+|.. ..|||++. ....+ .+.+.||||||+++.+...+.++.+..... ....+|||+||.++|.+
T Consensus 189 ~~~~p~~---~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~--~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 189 RKIHPNE---RIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPR--LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp HHHSTTC---CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEECCHHH--HSSSCCSBCCEEEEECC
T ss_pred hhhCCCC---CCcceeccccCCceecCceEEEEEEEECHHHHhhhheeEeehhhc--cCCCCCCccCEEEEEeC
Confidence 9888764 56999875 43333 244689999999999887788888875210 01367999999999874
No 4
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=2.7e-33 Score=260.71 Aligned_cols=257 Identities=32% Similarity=0.610 Sum_probs=183.0
Q ss_pred cCCCCCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 017771 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (366)
Q Consensus 36 ~~~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (366)
+.....|||+||||+|++...++ .+.++|+.++||||||||++.....+. .. +
T Consensus 23 ~~~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------~~------------------l 75 (285)
T 2o3h_A 23 SGKPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------AE------------------L 75 (285)
T ss_dssp TSCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCC------GG------------------G
T ss_pred CCCccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhcc------HH------------------H
Confidence 44566799999999998765432 389999999999999999987653221 01 1
Q ss_pred CCCCCCCc-eEEEecC--CCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhh
Q 017771 116 SSPPFKNY-QIWWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192 (366)
Q Consensus 116 ~~~~~~~y-~~~~~~~--~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~ 192 (366)
. ...|| +.++... ..++.|++||+|.++ ..+...++ ....+.++|++.+++..+.|+|+|+++.....+
T Consensus 76 ~--~~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~--~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~-- 147 (285)
T 2o3h_A 76 Q--ELPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIG--DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV-- 147 (285)
T ss_dssp G--GCGGGCEEEEECBC--CCSCCEEEEESSCC--SEEEESCS--CGGGSSBCCEEEEECSSCEEEEEECCCCCGGGT--
T ss_pred H--hccCCcEEEEecccCCcccceEEEEEccCh--HHeeeccC--CcccCCCCcEEEEEeCCEEEEEEEcCCCCCcch--
Confidence 1 11688 5565542 334569999999974 23333332 112345788888888899999999988765422
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-Hhhh
Q 017771 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAIL 270 (366)
Q Consensus 193 ~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 270 (366)
++++|.+|++.|.+++.+. ...|+|||||||+.+...|.+++. .+....++.+.++..| ..++
T Consensus 148 ~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~---------------~~~~~~g~~~~~~~~~~~~~l 212 (285)
T 2o3h_A 148 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK---------------GNKKNAGFTPQERQGFGELLQ 212 (285)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTT---------------TCTTSTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHHh
Confidence 3445677778888887653 468999999999988776654432 1123467788888888 8888
Q ss_pred ccCCeeeeeecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEe
Q 017771 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 349 (366)
Q Consensus 271 ~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l 349 (366)
.. +|.|+|+.++|... ..|||++.....+ .+.+.||||||+++.+...+.++.+... ...|||+||.++|
T Consensus 213 ~~-~l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~pv~~~l 283 (285)
T 2o3h_A 213 AV-PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYL 283 (285)
T ss_dssp HT-TCEEHHHHHCTTCC--SCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEE
T ss_pred cC-CCEEEEEecCCCCC--CcEeEecCcCCccccCceeEEEEEEECHHHHhhhhheEeecc------CCCCCeecEEEEe
Confidence 87 59999998887642 3589986543221 2335799999999998877888888752 3479999999998
Q ss_pred cc
Q 017771 350 SE 351 (366)
Q Consensus 350 ~~ 351 (366)
.+
T Consensus 284 ~l 285 (285)
T 2o3h_A 284 AL 285 (285)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 5
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=9.4e-34 Score=259.18 Aligned_cols=253 Identities=23% Similarity=0.414 Sum_probs=181.6
Q ss_pred cEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 017771 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (366)
|||+||||+|++...++ .+.++|+.++||||||||++.....+. . .+. ...
T Consensus 2 l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~----------~--------------~l~--~~~ 52 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADLS----------A--------------DMK--NPH 52 (259)
T ss_dssp EEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGCC----------H--------------HHH--SGG
T ss_pred cEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhccC----------h--------------hhc--ccc
Confidence 89999999998765432 499999999999999999986643111 0 010 116
Q ss_pred CceEEEec-CCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhhHHHHHHH
Q 017771 122 NYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (366)
Q Consensus 122 ~y~~~~~~-~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~ 200 (366)
||.+++.. +..++.|++||+|.++.. ....++. ...+..++++.++++.+.|+|+|+++.....+ +..++.+|
T Consensus 53 gy~~~~~~~~~~~~~G~ailsr~~~~~--~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~~--r~~~~~~~ 126 (259)
T 2jc5_A 53 GMHGHWHCAEKRGYSGVAVYSKRKPDN--VQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSAEE--RQQVKYRF 126 (259)
T ss_dssp GCEEEEECCSSTTCCCEEEEESSCCSE--EEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTCHH--HHHHHHHH
T ss_pred CCeEEEeccCCCCcceEEEEEecCcee--EEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCCcH--HHHHHHHH
Confidence 88877654 234467999999998642 2223321 12234678888999999999999999875432 34445677
Q ss_pred HHHHHHHHHhc--CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCeeee
Q 017771 201 DKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 278 (366)
Q Consensus 201 ~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~ 278 (366)
++.|.+++.+. .+.|+|||||||+.+.+.|...+. .+....++.+.+...+..++...+|.|+
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~l~d~ 191 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWK---------------GNQKNSGFLPEEREWIGKVIHKLGWTDM 191 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCST---------------TCTTSTTSCHHHHHHHHHHHHTTCCEEH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHhccCCcEEe
Confidence 78887877653 578999999999988876654322 1223457778888888888855669999
Q ss_pred eecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEeccCC
Q 017771 279 YRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 353 (366)
Q Consensus 279 ~~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~~~ 353 (366)
|+..+|.. ..|||++.....+ .+.+.||||||+++.+...+.++.+... ..+|||+||.++|.++.
T Consensus 192 ~~~~~~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~------~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 192 WRTLYPDV---PGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKD------EKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp HHHHCTTC---CCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEEEEECCS------SCCSSBCCEEEEESCCC
T ss_pred eHhhCCCC---CCccEECCcCCCccCCCeeEEEEEEECHHHHhHHhheeecCC------CCCCCcccEEEEEeccc
Confidence 99888754 4599986543211 2335799999999998877888888742 46899999999998753
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=6.9e-34 Score=269.90 Aligned_cols=256 Identities=31% Similarity=0.601 Sum_probs=180.2
Q ss_pred CCCCCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 017771 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (366)
Q Consensus 37 ~~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (366)
.....|||+||||+|++...++ .+.++|+.++||||||||++.....+. ..+.
T Consensus 57 ~~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~ 109 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------------------------AELQ 109 (318)
T ss_dssp SCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC--------------------------------
T ss_pred CCCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhcc------------------------HHHH
Confidence 3556799999999998765432 489999999999999999987643111 0011
Q ss_pred CCCCCCc-eEEEecC--CCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhh
Q 017771 117 SPPFKNY-QIWWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193 (366)
Q Consensus 117 ~~~~~~y-~~~~~~~--~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~ 193 (366)
...|| +.++... ..++.|++||+|.++ ..+...++. ...+.++|++.+++..+.|+|+|+|+...... +
T Consensus 110 --~~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~~--~ 181 (318)
T 1hd7_A 110 --ELPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV--R 181 (318)
T ss_dssp -----CCCEEEEECC-----CCCEEEEESSCC--SEEEESCSC--GGGSSSSCEEEEECSSCEEEEEECCCCCGGGT--T
T ss_pred --hcCCCceEEEecCCCCCccceEEEEEcCCc--eeEEecCCC--cccCCCCcEEEEEcCCEEEEEEEcCCCCCccc--c
Confidence 12688 5665542 334679999999974 233333321 12345688999999999999999988775422 3
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-Hhhhc
Q 017771 194 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILK 271 (366)
Q Consensus 194 ~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 271 (366)
+.+|.+|++.|..++.+. ...|+|||||||+.+.+.|..++.. +.+..++.+.++..| ..++.
T Consensus 182 ~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~---------------~~~~~g~~~~~~~~~~~~ll~ 246 (318)
T 1hd7_A 182 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG---------------NKKNAGFTPQERQGFGELLQA 246 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHH---------------HTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhh---------------cCCCCCcCHHHHHHHHHHHhh
Confidence 445677778887777643 3489999999999888777655432 124567888888888 88888
Q ss_pred cCCeeeeeecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEec
Q 017771 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350 (366)
Q Consensus 272 ~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~ 350 (366)
. +|.|+|+.++|... ..|||++.....+ .+.+.||||||+++.+...+.++.|... ..+|||+||+++|.
T Consensus 247 ~-~l~D~~r~~~p~~~--~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~ 317 (318)
T 1hd7_A 247 V-PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLA 317 (318)
T ss_dssp T-TCEEHHHHHCTTCT--TCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEEC
T ss_pred C-CCEEeehhhCCCCC--CCcceECCcCCCcccCCceEEEEEEECHHHHhhhhheEeecc------CCCCCccCEEEEec
Confidence 7 59999998888642 3599986533211 2335799999999998877888888752 34699999999987
Q ss_pred c
Q 017771 351 E 351 (366)
Q Consensus 351 ~ 351 (366)
+
T Consensus 318 l 318 (318)
T 1hd7_A 318 L 318 (318)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=2.8e-33 Score=255.55 Aligned_cols=253 Identities=28% Similarity=0.446 Sum_probs=181.8
Q ss_pred cEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 017771 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (366)
|||+||||+|++.+. +.+.++|+.++||||||||++.....+. ...+. ..
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~-----------------------~~~~~---~~ 50 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFP-----------------------AAALQ---MM 50 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSC-----------------------HHHHH---TT
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCC-----------------------HhHHh---hc
Confidence 799999999987664 5799999999999999999987653111 01111 16
Q ss_pred CceEEEecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhhHHHHHHHH
Q 017771 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (366)
Q Consensus 122 ~y~~~~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~~ 201 (366)
||.+++.. ..++.|++|++|.++.. ....++. ...+..++++.+.++.+.|+|+|+++...... ..+..|.+++
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-~~~~~r~~~~ 124 (256)
T 2jc4_A 51 GWHCVWSG-QKTYNGVAIVSRSVPQD--VHFGLPA--LPDDPQRRVIAATVSGVRVINVYCVNGEALDS-PKFKYKEQWF 124 (256)
T ss_dssp TCEEEEEC-CSSSCCEEEEESSCCEE--EEESCTT--STTCCSCCEEEEEETTEEEEEEECCCCCSTTS-HHHHHHHHHH
T ss_pred CCeEEECC-CCcceEEEEEECCChHH--heecCCC--CccCCcCcEEEEEeCCEEEEEEEecCCCCCCc-HhHHHHHHHH
Confidence 89877653 44577999999997632 2223432 11345678888888999999999998875321 2344566777
Q ss_pred HHHHHHHHhc--CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCeeeee
Q 017771 202 KRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 279 (366)
Q Consensus 202 ~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~ 279 (366)
+.|.+++.+. .+.|+|||||||+.+.+.|..++..+ .+..++.+.++..+..++..+ |.|+|
T Consensus 125 ~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~ 188 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKW---------------HEKIHCSSVERQWFQNLLDLG-LTDSL 188 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGG---------------TTCTTSCHHHHHHHHHHHTTT-CEEHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHh---------------CCCCCcCHHHHHHHHHHHhcC-cEEhh
Confidence 8888877653 67899999999998877665544321 245577888888888888644 99999
Q ss_pred ecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEecc
Q 017771 280 RFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 351 (366)
Q Consensus 280 ~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~ 351 (366)
+..+|.. ..|||++.....+ .+.+.||||||+++.+...+.++.+.... .....+|||+||.++|.+
T Consensus 189 ~~~~~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~--~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 189 RQVHPEG---AFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLET--RALERPSDHAPVTAEFDW 256 (256)
T ss_dssp HHHCCSS---CCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEECC
T ss_pred hhhCCCC---CceeeEcCCCCccccCcEEEEEEEEECHHHHhheeEEEEEhhc--ccCCCCCCcccEEEEecC
Confidence 9888764 5689986543322 23457999999999988778888887521 112468999999999874
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=4.3e-32 Score=244.79 Aligned_cols=230 Identities=25% Similarity=0.360 Sum_probs=161.7
Q ss_pred CCCCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 017771 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (366)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (366)
...+|||+||||+|++...++ ..+.++|++++||||||||++.....+ ..+
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~-------------------------~~l-- 54 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDT-------------------------HRL-- 54 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSG-------------------------GGC--
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCc-------------------------hhH--
Confidence 345799999999998765432 579999999999999999998654211 011
Q ss_pred CCCCCceEE-EecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEe----CCEEEEEEeecCCCCcchhh
Q 017771 118 PPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEEN 192 (366)
Q Consensus 118 ~~~~~y~~~-~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~----~~l~v~nvh~~~~~~~~~~~ 192 (366)
...+|.++ +..+..++.|++|++|.++. ..... .. .+.++|++.+++ ..+.|+|+|+|+... .
T Consensus 55 -~~~~y~~~~~~~~~~~~~Gvail~r~~~~-~~~~~-~~-----~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----~ 122 (238)
T 1vyb_A 55 -KIKGWRKIYQANGKQKKAGVAILVSDKTD-FKPTK-IK-----RDKEGHYIMVKGSIQQEELTILNIYAPNTGA----P 122 (238)
T ss_dssp -CCTTCCEEEEECCSSSSCCEEEEECTTCC-CEEEE-EE-----ECTTSSEEEEEEEETTEEEEEEEEECCSSSH----H
T ss_pred -hhCCCCeEEEccCCCCCceEEEEEeCCCC-ccccc-ee-----EcCCCcEEEEEEEeCCCcEEEEEEecCCCCc----H
Confidence 12578654 34344456799999999752 22211 11 234677777665 369999999998762 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhcc
Q 017771 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272 (366)
Q Consensus 193 ~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (366)
.+++.+.+.+.+..+.|+|||||||+.+.+.|... .++.+.+...+..++..
T Consensus 123 ------~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 174 (238)
T 1vyb_A 123 ------RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST----------------------RQKVNKDTQELNSALHQ 174 (238)
T ss_dssp ------HHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT----------------------CCCCCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC----------------------CCCCcHHHHHHHHHHhh
Confidence 13445556665445789999999999876544321 23445566778888866
Q ss_pred CCeeeeeecccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEec
Q 017771 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350 (366)
Q Consensus 273 ~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~ 350 (366)
.+|.|+|+..+|.. ..|||++.... ...||||||+++.+...+.++.+.. ..+|||+||.++|+
T Consensus 175 ~~l~d~~~~~~~~~---~~~T~~~~~~~----~~~rID~i~~s~~~~~~~~~~~v~~-------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 175 ADLIDIYRTLHPKS---TEYTFFSAPHH----TYSKIDHIVGSKALLSKCKRTEIIT-------NYLSDHSAIKLELR 238 (238)
T ss_dssp TTEEEHHHHHCTTC---CCCSEEETTTT----EEECCEEEEEEGGGGGGEEEEEEEC-------CSSSSSCEEEEEEC
T ss_pred CCCEEhhHhhCCCC---CceeEEcCCCC----cccceEEEEeCHHHHhhhhhceeec-------CCCCCcccEEEEeC
Confidence 66999999888764 56999764322 2479999999999887788888874 36799999999984
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=6e-32 Score=248.37 Aligned_cols=256 Identities=23% Similarity=0.371 Sum_probs=175.5
Q ss_pred cEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCCC
Q 017771 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (366)
|||+||||+|++.+. ..+.++|+.++||||||||++.....+. . .+++. .
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~---------~-----------~~l~~------~ 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFP---------L-----------EEVAK------L 50 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCC---------H-----------HHHHH------T
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCC---------H-----------hHhcc------C
Confidence 799999999886543 6799999999999999999986643111 0 00111 5
Q ss_pred CceEEEecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeC----CEEEEEEeecCCCCcchhhhHHHH
Q 017771 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (366)
Q Consensus 122 ~y~~~~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~----~l~v~nvh~~~~~~~~~~~~~~~r 197 (366)
||.+++.. ..++.|++||+|.++. .....++. ...+..++++.+.+. .+.|+|+|+++.........+..|
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r 125 (268)
T 1ako_A 51 GYNVFYHG-QKGHYGVALLTKETPI--AVRRGFPG--DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAK 125 (268)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCS--EEEESSTT--CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHH
T ss_pred CCcEEEeC-CCCcceEEEEEecCcc--eeeeCCCC--cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHH
Confidence 88876653 4457799999999763 23333331 011223566666553 699999999987743221234456
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEccCCccCCcCcCcChh----hhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhc
Q 017771 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPE----FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271 (366)
Q Consensus 198 ~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (366)
..+++.|.+++.+. .+.|+|||||||+.+.+.+..... .|... +..++.+.++..+..+++
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~-------------~~~~~~~~~~~~~~~l~~ 192 (268)
T 1ako_A 126 AQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRT-------------GKCSFLPEEREWMDRLMS 192 (268)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHH-------------TBTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccC-------------CCcCcCHHHHHHHHHHhc
Confidence 77888888888753 678999999999988876654321 11100 345677877788887776
Q ss_pred cCCeeeeeecccCCCCCCcceeecCCCCCCC-CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEec
Q 017771 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 350 (366)
Q Consensus 272 ~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~-~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~ 350 (366)
.+ |.|+|+..+|... ..|||++.....+ .+.+.||||||+++.+...+..+.+.... .....+|||+||.++|+
T Consensus 193 ~g-l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~i~~~~--~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 193 WG-LVDTFRHANPQTA--DRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEI--RSMEKPSDHAPVWATFR 267 (268)
T ss_dssp TT-EEEHHHHHSTTCC--SCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEEECHHH--HTSSSCCSBCCEEEEEC
T ss_pred CC-CEEeEhhhCCCCC--CCeeEeCCcCCccccCceEEEEEEEeCHHHHHHHHhceechhh--cCCCCCCCcccEEEEcc
Confidence 44 9999999888642 5699987544322 23458999999999988777788876421 11236799999999985
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.97 E-value=4.8e-30 Score=247.89 Aligned_cols=236 Identities=22% Similarity=0.295 Sum_probs=146.3
Q ss_pred cccCCCCCcEEEEEeCccchhh-hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 017771 34 EENSKKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (366)
Q Consensus 34 ~~~~~~~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (366)
.+..+...|||+||||+|+... .+.|...|+++|+.++|||||||||..... .. +
T Consensus 112 ~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~---------~~---------------l 167 (362)
T 4gew_A 112 AEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------AP---------------I 167 (362)
T ss_dssp -CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HH---------------H
T ss_pred CCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHh---------HH---------------H
Confidence 3445677899999999997532 122336799999999999999999964431 11 1
Q ss_pred HhhCCCCCCCceEEEecCCCCcceEEEEEecCCCcceee-ecccccccCCCCCCCEEEE--EeC--CEEEEEEeecCCCC
Q 017771 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGRVILA--EFE--TFYLLNTYAPNNGW 187 (366)
Q Consensus 113 ~~l~~~~~~~y~~~~~~~~~~~~Gvailsr~~i~~~~~~-~~~~~~~~~~~~~~r~i~~--~~~--~l~v~nvh~~~~~~ 187 (366)
+.+ ..+|.++.. +..++.|++||+|.++...... ...+ .......++.+ ... .|.|+|+|+++...
T Consensus 168 ~~~----~~~y~~~~~-~~~~~~G~aIlsk~~i~~~~~~~~~~~----~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 168 DKL----QSLYKIYYS-NKGCQYYTAILVSKMFDVEKHDVIHFQ----NSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp HGG----GGTEEEEES-STTSSSEEEEEEETTEEEEEEEEEECT----TCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred HHh----cCCceEEeC-CCCCCceEEEEEeccCccccccccCCC----CCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 222 156666654 4555779999999976322211 1111 11112223333 333 59999999998764
Q ss_pred cchhhhHHHHHHHHHHHHHHHH----hcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHH
Q 017771 188 KEEENSFQRRRKWDKRIQEFVL----QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 263 (366)
Q Consensus 188 ~~~~~~~~~r~~~~~~l~~~l~----~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
.. ..|..++..+...+. ...+.|+|||||||..+......
T Consensus 239 ~~-----~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~------------------------------- 282 (362)
T 4gew_A 239 HR-----PQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV------------------------------- 282 (362)
T ss_dssp GH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC-------------------------------
T ss_pred ch-----hHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh-------------------------------
Confidence 32 123333444444333 24678999999999866542211
Q ss_pred HHHHhhhccCCeeeeeecccCCCCCCcceeecCCCCCCCC---CCcceeEEEEeChhhHhhheEEEEcC-CccccCCCCC
Q 017771 264 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR---GKRMRIDYFIVSEELKDRIIACEMQG-HGIELEGFYG 339 (366)
Q Consensus 264 ~~~~~~l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~---~~~~rID~I~~s~~~~~~~~~~~v~~-~~~~~~~~~~ 339 (366)
..+|.|+|+.+++... ..|||+...+..+. ..+.||||||+++.+. +..+.+.. ......+.++
T Consensus 283 --------~~gl~Da~~~~~~~~~--~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ri~~~~~~p 350 (362)
T 4gew_A 283 --------PDGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFP 350 (362)
T ss_dssp --------CTTCEEHHHHTTCCGG--GCCSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCSCCTTTSSCS
T ss_pred --------cchHHHHHHHhCCCCC--CCcCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeeeecCCCCCCC
Confidence 1349999998876543 67899765443322 2347999999998764 34444432 1111224578
Q ss_pred CCCcceEEEec
Q 017771 340 SDHCPVSLELS 350 (366)
Q Consensus 340 SDH~Pv~~~l~ 350 (366)
|||+||+++|.
T Consensus 351 SDH~pV~A~FS 361 (362)
T 4gew_A 351 SDHWAINATFF 361 (362)
T ss_dssp CSSCEEEEEEE
T ss_pred CcccCEEEEEc
Confidence 99999999985
No 11
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.96 E-value=1.4e-28 Score=223.46 Aligned_cols=238 Identities=20% Similarity=0.276 Sum_probs=142.2
Q ss_pred cCCCCCcEEEEEeCccchhh-hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 017771 36 NSKKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (366)
Q Consensus 36 ~~~~~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (366)
..+..+|||+||||+|+... ...+...+.++|+.++||||||||+..... .. +..
T Consensus 8 ~~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~---------~~---------------l~~ 63 (256)
T 4fva_A 8 DLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------AP---------------IDK 63 (256)
T ss_dssp CCTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HH---------------HHG
T ss_pred cCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHh---------HH---------------HHH
Confidence 35667899999999987432 122336799999999999999999965431 11 122
Q ss_pred hCCCCCCCceEEEecCCCCcceEEEEEecCCCcceee-ecccccccCCCCCCCEEE--EEeC--CEEEEEEeecCCCCcc
Q 017771 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGRVIL--AEFE--TFYLLNTYAPNNGWKE 189 (366)
Q Consensus 115 l~~~~~~~y~~~~~~~~~~~~Gvailsr~~i~~~~~~-~~~~~~~~~~~~~~r~i~--~~~~--~l~v~nvh~~~~~~~~ 189 (366)
+ .++..++.....+..|++|+++.++...... ...+. .......+. +... .+.|+|+|+++.....
T Consensus 64 ~-----~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~ 134 (256)
T 4fva_A 64 L-----QSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQN----SGMYRTLQILEGSIGGLKVFLLNTHLESTREHR 134 (256)
T ss_dssp G-----GGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTT----CSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred h-----cCCceEeecCCCCCcceEEEEeecccceecccccCCC----CcccceeEEEEEEeCCeEEEEEEecCCCCCcch
Confidence 2 3344444445556779999999876322211 11211 111122333 3333 5999999999876432
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhh
Q 017771 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 269 (366)
Q Consensus 190 ~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
. ....+....++.+........+.|+|+|||||+.+......
T Consensus 135 ~-~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~------------------------------------- 176 (256)
T 4fva_A 135 P-QRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV------------------------------------- 176 (256)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC-------------------------------------
T ss_pred H-HHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh-------------------------------------
Confidence 2 11111122222333333335788999999999865432111
Q ss_pred hccCCeeeeeecccCCCCCCcceeecCCCCCCC---CCCcceeEEEEeChhhHhhheEEEEcCC-ccccCCCCCCCCcce
Q 017771 270 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY---RGKRMRIDYFIVSEELKDRIIACEMQGH-GIELEGFYGSDHCPV 345 (366)
Q Consensus 270 l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~---~~~~~rID~I~~s~~~~~~~~~~~v~~~-~~~~~~~~~SDH~Pv 345 (366)
..++.|+|+...+... ..+||....+... .....||||||+++.+. +....+... .....+.++|||+||
T Consensus 177 --~~~~~d~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~~--~~~~~~~~~~~~~~~~~~~SDH~pv 250 (256)
T 4fva_A 177 --PDGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAI 250 (256)
T ss_dssp --CTTCEEHHHHTTCCGG--GCCSEETTTCCSSCSCCSCEECCEEEEEESSCC--EEEEEEECCSCCTTTCSCSCSSCEE
T ss_pred --hcchhhHHHHhCCCCC--CCcccccccCcccccCCCCCcCeEEEEEcCCce--eeEEEEEeeEecCCCCCCcCcccCE
Confidence 1248899988765543 6789876543322 12347899999998764 344454421 111224568999999
Q ss_pred EEEec
Q 017771 346 SLELS 350 (366)
Q Consensus 346 ~~~l~ 350 (366)
.++|.
T Consensus 251 ~a~Fs 255 (256)
T 4fva_A 251 NATFF 255 (256)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99985
No 12
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.96 E-value=3.4e-29 Score=228.61 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=140.3
Q ss_pred CcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCCC
Q 017771 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (366)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (366)
.|||+||||||++.+. +.+.++|++++||||||||++..
T Consensus 7 ~mki~s~Nvn~~r~~~----~~l~~~l~~~~~DIl~LQEt~~~------------------------------------- 45 (240)
T 2ei9_A 7 RLRIGQINLGGAEDAT----RELPSIARDLGLDIVLVQEQYSM------------------------------------- 45 (240)
T ss_dssp EEEEEEEECTTCHHHH----HTHHHHHHHHTCSEEEEESCCTT-------------------------------------
T ss_pred cceEEEEecCccHHHH----HHHHHHHHHcCCCEEEeecceEc-------------------------------------
Confidence 5999999999998876 35999999999999999999721
Q ss_pred CCceEEEecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCCCcchhhhHHHHHHH
Q 017771 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (366)
Q Consensus 121 ~~y~~~~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~~~~r~~~ 200 (366)
.||. + . + .+++|+||+++.+..|....... .+..++++.+++..+.|+|+|+|++... .++.+|
T Consensus 46 ~gy~-~-~-~-~~~~gvail~~~~~~~~~~~~~~------~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~ 109 (240)
T 2ei9_A 46 VGFL-A-Q-C-GAHPKAGVYIRNRVLPCAVLHHL------SSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHR 109 (240)
T ss_dssp SSSE-E-C-C-SSSCSEEEEESSTTSCEEECGGG------CCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHH
T ss_pred CCce-E-e-c-cCCCCEEEEEecCCcceeeeccc------CCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHH
Confidence 4666 2 2 1 24679999999854444322111 1234556777667899999999998742 224555
Q ss_pred HHHHHHHHHhcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhccCCeeeeee
Q 017771 201 DKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 280 (366)
Q Consensus 201 ~~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~ 280 (366)
++.|...+ .+.++|||||||+++..++ +... ..++.+.++....+.+. +++|.++
T Consensus 110 l~~l~~~~---~~~~~Ii~GDfN~~~~~w~---~~~~-----------------~~~~~~~~r~~~~~~l~--~~~d~~~ 164 (240)
T 2ei9_A 110 LGNILDRL---RGARVVICADTNAHSPLWH---SLPR-----------------HYVGRGQEVADRRAKME--DFIGARR 164 (240)
T ss_dssp HHHHHHHT---TTSCEEEEEECCCCCGGGT---CCHH-----------------HHSSSCHHHHHHHHHHH--HHHHHTT
T ss_pred HHHHHHhc---CCCcEEEEEeccccccccc---CCCC-----------------CCCCcchhhHHHHHHHH--HHHHhcC
Confidence 66654432 3579999999999874321 1110 00223333333333332 2666665
Q ss_pred --cccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEeccCCC
Q 017771 281 --FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 354 (366)
Q Consensus 281 --~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~~~~ 354 (366)
.+++.. ..|||+++.. ++||||+|+++.+.. ..+.+.. ..+|||+||.++|....+
T Consensus 165 l~~~~~~~---~~~T~~s~~~------~~rID~~l~s~~l~~--~~~~i~~-------~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 165 LVVHNADG---HLPTFSTANG------ESYVDVTLSTRGVRV--SEWRVTN-------ESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp CEECCCTT---CCCSEEETTE------EECCEEEEECTTCCE--EEEEECS-------CCSSSBCCEEEEEEC---
T ss_pred CEecCCCC---CCceEeCCCC------ceEEEEEEecCcccc--CCeEECC-------CCCCCcccEEEEECCCCC
Confidence 335532 4699986421 589999999998765 5566652 467999999999987653
No 13
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=2.2e-27 Score=216.32 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=139.8
Q ss_pred CCCCcEEEEEeCccchhhhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 017771 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (366)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (366)
....|||+||||++.+... +.+.++|++++||||||||++....... .
T Consensus 16 ~~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~~---------------------------~- 63 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKSM---------------------------K- 63 (245)
T ss_dssp --CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC---------------------------------C-
T ss_pred cCcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCccc---------------------------c-
Confidence 3456999999999987654 5799999999999999999987643111 0
Q ss_pred CCCCCceEEEecC-CCCcceEEEEEec-CCCcceeeecccccccCCCCCC-CEEEEEe--CCEEEEEEeecCCCCcchhh
Q 017771 118 PPFKNYQIWWSLA-DSKYAGTALLVKK-CFQPKKVSFSLEKTALKYEPDG-RVILAEF--ETFYLLNTYAPNNGWKEEEN 192 (366)
Q Consensus 118 ~~~~~y~~~~~~~-~~~~~Gvailsr~-~i~~~~~~~~~~~~~~~~~~~~-r~i~~~~--~~l~v~nvh~~~~~~~~~~~ 192 (366)
...+|.++.... ..++.|+|||++. ++. + ...+. ....+ ..+.+.. ..+.|+|+|+++....
T Consensus 64 -~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~---~-~~~~~----~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~---- 130 (245)
T 1wdu_A 64 -GFRGVRVFQSTAQGDGTVKAAIAVFDHDLD---V-IQYPQ----LTTNNIVVVGIRTRAWEITLVSYYFEPDKPI---- 130 (245)
T ss_dssp -CCSSCEEEECCCCTTCCCCEEEEECCSSCE---E-EECTT----TCCSSEEEEEEECSSCEEEEEEEECCTTSCS----
T ss_pred -CCCcceEeccccccCCCCCeEEEEECCCcc---e-EEecc----cccCCEEEEEEEcCCCcEEEEEEEeCCCCCH----
Confidence 115887665432 2346799999965 442 1 11210 11122 2233333 3699999999987631
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhcc
Q 017771 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 272 (366)
Q Consensus 193 ~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (366)
..|++.|..++......++|||||||+.+..++.. . ...+...|..++..
T Consensus 131 -----~~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~~~~~~------------------------~-~~~~~~~l~~~~~~ 180 (245)
T 1wdu_A 131 -----ESYLEQIKRVERKMGPKRLIFGGDANAKSTWWGSK------------------------E-DDARGDQLMGTLGE 180 (245)
T ss_dssp -----HHHHHHHHHHHHTTCSSSEEEEEECCCCCGGGTCS------------------------S-CCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCCCcEEEEeccccCcccCCCC------------------------C-cCcchHHHHHHHHH
Confidence 12344555555444568999999999876432210 0 12234456666654
Q ss_pred CCeeeeeecccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceEEEeccC
Q 017771 273 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 352 (366)
Q Consensus 273 ~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~~~l~~~ 352 (366)
.+|.. .++. ..+||++.... ...+.||||||+++.+...+.++.|... ..+|||+||.++|.+.
T Consensus 181 ~~l~~----~~~~----~~~T~~~~~~~--~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 181 LGLHI----LNEG----DVPTFDTIRGG--KRYQSRVDVTFCTEDMLDLIDGWRVDED------LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp HTCEE----CCCS----CCCSEEC-------CCEECCEEEEECGGGBTTEEEEEECTT------SSSSSBCCEEEEECCC
T ss_pred CCcEE----ecCC----CCCcEECCCCC--CCCCCEEEEEEeChHHHhhccceEEcCC------CCCCCcccEEEEEEeC
Confidence 44532 2332 45898865331 1236899999999988777888888742 4789999999999863
No 14
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.95 E-value=1.4e-27 Score=216.56 Aligned_cols=240 Identities=21% Similarity=0.278 Sum_probs=134.1
Q ss_pred CCCCCcEEEEEeCccchhh-hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 017771 37 SKKDPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (366)
Q Consensus 37 ~~~~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (366)
....+|||+||||+|+... ...+...++++|+.++|||||||||.... + ..+.+.+
T Consensus 5 ~~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~~ 61 (256)
T 4gz1_A 5 EDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------------C-----------AYLKKRA 61 (256)
T ss_dssp GGGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHHC
T ss_pred CCCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH------------H-----------HHHHhhc
Confidence 3456799999999987532 22234679999999999999999996432 1 1112221
Q ss_pred CCCCCCCceEEEecCCCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEE--EeC--CEEEEEEeecCCCCcchh
Q 017771 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILA--EFE--TFYLLNTYAPNNGWKEEE 191 (366)
Q Consensus 116 ~~~~~~~y~~~~~~~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~--~~~--~l~v~nvh~~~~~~~~~~ 191 (366)
..|.++ .....+. |.+++++.+..+.. ...... ..........+.+ ... .+.|+|+|+++.....
T Consensus 62 -----~~~~~~-~~~~~~~-~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~-- 130 (256)
T 4gz1_A 62 -----ASYTII-TGNEEGY-FTAILLKKGRVKFK-SQEIIP-FPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHS-- 130 (256)
T ss_dssp -----TTEEEE-ESCSSSS-EEEEEEETTTEEEE-EEEEEE-CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGH--
T ss_pred -----ccccee-eccccCC-ceEEEEEeccccce-eccccc-CCcccccceEEEEEEEeCCEEEEEEeecccccccch--
Confidence 334333 3233334 45555555421111 111110 0011111223333 333 5999999998876321
Q ss_pred hhHHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhh
Q 017771 192 NSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 270 (366)
Q Consensus 192 ~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (366)
..+..++..+.+.+++. .+.|+|+|||||+.+.+.+. ....
T Consensus 131 ---~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~-----------------------------------~~~~ 172 (256)
T 4gz1_A 131 ---AERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIK-----------------------------------CGGL 172 (256)
T ss_dssp ---HHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHH-----------------------------------HTCS
T ss_pred ---hhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhhh-----------------------------------hhhc
Confidence 22445566677777654 67899999999975432111 1112
Q ss_pred ccCCeeeeeecccCCCCCCcceeecCCCCC--CC-CCCcceeEEEEeChhhHh-hheEEEEcCCccccCCCCCCCCcceE
Q 017771 271 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIG--KY-RGKRMRIDYFIVSEELKD-RIIACEMQGHGIELEGFYGSDHCPVS 346 (366)
Q Consensus 271 ~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~--~~-~~~~~rID~I~~s~~~~~-~~~~~~v~~~~~~~~~~~~SDH~Pv~ 346 (366)
..++.|.|+....... ..++|...... .+ ...+.||||||+++.... ......+.....-..+..+|||+||+
T Consensus 173 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~ 249 (256)
T 4gz1_A 173 -PDNVFDAWEFLGKPKH--CQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLL 249 (256)
T ss_dssp -CTTEEEHHHHTTCCGG--GSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEE
T ss_pred -cchhhhHHHHhcCCCC--CCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEE
Confidence 2347888877665432 45566443221 11 234689999999875431 22333443211111235679999999
Q ss_pred EEecc
Q 017771 347 LELSE 351 (366)
Q Consensus 347 ~~l~~ 351 (366)
++|++
T Consensus 250 a~~~i 254 (256)
T 4gz1_A 250 CTLNV 254 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 15
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=1.3e-26 Score=212.37 Aligned_cols=252 Identities=19% Similarity=0.242 Sum_probs=145.2
Q ss_pred CCcEEEEEeCccchh-hhhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 017771 40 DPLKFVTWNANSLLL-RVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~-~~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (366)
++|||+||||++... ..+.++..++++|+.++||||||||+......... ...++.+. ....+.+.|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~----~~~~~~d~-----~~~~~~~~l~~~ 72 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKII----FDDIREEN-----YAWVLLETLQKY 72 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEE----ETTEETTC-----HHHHHHHHHTTT
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEcccccccccc----cccccccc-----HHHHHHHHHHHh
Confidence 569999999976532 12223367899999999999999999754321000 00001000 001123445432
Q ss_pred CCCCceEEEec---CCCC-cceEEEEEecCCCcceeeeccccc--ccCCCCCCCEEEEEe--C--CEEEEEEeecCCCCc
Q 017771 119 PFKNYQIWWSL---ADSK-YAGTALLVKKCFQPKKVSFSLEKT--ALKYEPDGRVILAEF--E--TFYLLNTYAPNNGWK 188 (366)
Q Consensus 119 ~~~~y~~~~~~---~~~~-~~Gvailsr~~i~~~~~~~~~~~~--~~~~~~~~r~i~~~~--~--~l~v~nvh~~~~~~~ 188 (366)
...+|.+++.. +..+ ..|++||+|.++... ..+.++.. ..... .+.++.+.+ . .+.|+|+|+++....
T Consensus 73 ~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~-~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~ 150 (266)
T 3teb_A 73 TDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAE-DEFYCTFAQSVRTIS-ARRIVSITINYEGQDIEFYSCHMNLPNCE 150 (266)
T ss_dssp CCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEE-EEEECSSCCCTTCTT-CCEEEEEEEEETTEEEEEEEEECCCTTCT
T ss_pred CCCCeEEEEeccccCccccCCeEEEEECceecCc-eeEEeCCCCCCCCcc-cceEEEEEEEeCCeEEEEEEecCCCccCC
Confidence 22357765322 2223 559999999987322 12223210 01111 233444444 2 699999999887532
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHh
Q 017771 189 EEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 268 (366)
Q Consensus 189 ~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+ .|..+++.|.+.+.+ ..|+|||||||+.+... ...+..
T Consensus 151 ~~-----~r~~q~~~l~~~~~~--~~~~il~GDfN~~~~~~---------------------------------~~~~~~ 190 (266)
T 3teb_A 151 TE-----DMGKNIQTILNRTQN--SNLKILMGDFNTDAIGN---------------------------------VAAYEN 190 (266)
T ss_dssp TC-----CHHHHHHHHHTSSCS--CCEEEEEEECCCCTTTC---------------------------------HHHHHH
T ss_pred hH-----HHHHHHHHHHHHHhc--CCcEEEEeECCCCCCCC---------------------------------CcHHHh
Confidence 21 133345555555432 78999999999876211 012344
Q ss_pred hhccCCeeeeeecccCCCCCCcceeecCCCCCCC--CCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCCCCCcceE
Q 017771 269 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY--RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 346 (366)
Q Consensus 269 ~l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~--~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~ 346 (366)
++..+ |.|+|+...+.. ..+||... ...| ...+.||||||+++.+. +..+.+..... .+..+|||+||.
T Consensus 191 l~~~~-l~d~~~~~~~~~---~~~t~~~~-~~~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~--~~~~~SDH~Pv~ 261 (266)
T 3teb_A 191 ILSQG-LFDTYVMAEKKD---DGITVDKS-IHGWDNDKAKKRLDYIFSNKELK--VKESKVIFNNK--NKEIVSDHFGIE 261 (266)
T ss_dssp HHTTT-CEEHHHHCSEEC---CCCCEECC-------CTTEECCEEEEESSCCC--EEEEEEESSSS--SSCCCSSSCEEE
T ss_pred hcccc-ccchHHhhcccc---CCccccCc-cCCcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCC--CCCCcCCccCEE
Confidence 55544 999998877653 45676321 1122 12468999999998765 67777765321 124679999999
Q ss_pred EEecc
Q 017771 347 LELSE 351 (366)
Q Consensus 347 ~~l~~ 351 (366)
++|++
T Consensus 262 ~~l~l 266 (266)
T 3teb_A 262 VKIEF 266 (266)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99975
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.95 E-value=6.8e-27 Score=209.65 Aligned_cols=234 Identities=18% Similarity=0.277 Sum_probs=136.0
Q ss_pred CCcEEEEEeCccchhh-hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCC
Q 017771 40 DPLKFVTWNANSLLLR-VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~~-~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (366)
.+|||+||||+|+... ...+...++++|++++|||||||||.... + ..+...
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~---- 54 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY------------V-----------QYLKKR---- 54 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH----
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH------------H-----------HHHHHh----
Confidence 5799999999987432 12233679999999999999999996432 1 111222
Q ss_pred CCCCceEEEecCCCCcceEEEEEecCCCcceee-ecccccccCCCCCCC-EEEEE--eC--CEEEEEEeecCCCCcchhh
Q 017771 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPNNGWKEEEN 192 (366)
Q Consensus 119 ~~~~y~~~~~~~~~~~~Gvailsr~~i~~~~~~-~~~~~~~~~~~~~~r-~i~~~--~~--~l~v~nvh~~~~~~~~~~~ 192 (366)
.++..++.....+..|.+++++.++...... ...+ ....++ ++.+. .. .+.|+++|+++....
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~---- 123 (250)
T 4f1h_A 55 --AVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFP-----TTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ---- 123 (250)
T ss_dssp --CTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECT-----TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG----
T ss_pred --ccCceeecccccccCceeEEeeccccceeccccccc-----CccccceEEEEEEecCCcEEEEecccccccccc----
Confidence 3444444444445566677776654322211 1111 111222 33333 22 599999999876632
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhc
Q 017771 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 271 (366)
Q Consensus 193 ~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (366)
...|..+++.+.+.+++. ...|+|||||||+.+.+.+... ..
T Consensus 124 -~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~-----------------------------------~~- 166 (250)
T 4f1h_A 124 -SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVG-----------------------------------GL- 166 (250)
T ss_dssp -HHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTTT-----------------------------------SS-
T ss_pred -HHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhhh-----------------------------------hc-
Confidence 223455677777777654 5679999999998654322110 11
Q ss_pred cCCeeeeeecccCCCCCCcceeecCCCCC--CC-CCCcceeEEEEeChhhHhhh---eEEEEcCCccccCCCCCCCCcce
Q 017771 272 EGRLIDAYRFLHKEKDMDCGFSWSGNPIG--KY-RGKRMRIDYFIVSEELKDRI---IACEMQGHGIELEGFYGSDHCPV 345 (366)
Q Consensus 272 ~~~l~D~~~~~~p~~~~~~~~T~~~~~~~--~~-~~~~~rID~I~~s~~~~~~~---~~~~v~~~~~~~~~~~~SDH~Pv 345 (366)
...+.|.|+.+++... ..++|....+. .+ ...+.||||||+++...... ....+.....-..+..+|||+||
T Consensus 167 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv 244 (250)
T 4f1h_A 167 PAGVCDVWEQLGKQEH--CRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWGI 244 (250)
T ss_dssp CTTEEEHHHHTTCCGG--GCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCEE
T ss_pred cccchHHHHHhcCCcc--CCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccCE
Confidence 1337788877765542 44555432221 11 23457999999987654322 22233221111123567999999
Q ss_pred EEEec
Q 017771 346 SLELS 350 (366)
Q Consensus 346 ~~~l~ 350 (366)
+++|+
T Consensus 245 ~a~f~ 249 (250)
T 4f1h_A 245 YCTFN 249 (250)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=6.8e-25 Score=200.64 Aligned_cols=231 Identities=18% Similarity=0.155 Sum_probs=138.2
Q ss_pred cEEEEEeCccchhhh-----hCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhC
Q 017771 42 LKFVTWNANSLLLRV-----KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~-----~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (366)
|||+||||++..... ..+...+.++|+.++||||||||+.... + ..+.+.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l~~~-- 55 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ------------V-----------RDLKAY-- 55 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH--
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH------------H-----------HHHHhc--
Confidence 799999997764321 1223579999999999999999998432 1 111221
Q ss_pred CCCCCCceEEEecCC--CCcceEEEEEecC-CCcce-eeeccccc--ccC---CCCCCCEE-EE--Ee----CCEEEEEE
Q 017771 117 SPPFKNYQIWWSLAD--SKYAGTALLVKKC-FQPKK-VSFSLEKT--ALK---YEPDGRVI-LA--EF----ETFYLLNT 180 (366)
Q Consensus 117 ~~~~~~y~~~~~~~~--~~~~Gvailsr~~-i~~~~-~~~~~~~~--~~~---~~~~~r~i-~~--~~----~~l~v~nv 180 (366)
.+|.++..... .+..|++||+|.. +.... ..+.++.. ... .....|.+ .+ .. ..+.|+|+
T Consensus 56 ----l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 56 ----TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp ----SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred ----CCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEe
Confidence 48876654432 3466999999843 11111 11212110 000 01223432 23 32 36999999
Q ss_pred eecCCCCcchhhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCCCCCCC
Q 017771 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 259 (366)
Q Consensus 181 h~~~~~~~~~~~~~~~r~~~~~~l~~~l~~-~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (366)
|+.+... ..|..+++.+.+++.+ ....|+|||||||+.+.+.
T Consensus 132 Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~------------------------------ 174 (257)
T 3l1w_A 132 HLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEE------------------------------ 174 (257)
T ss_dssp ECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSH------------------------------
T ss_pred CCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcH------------------------------
Confidence 9987651 1245556677777752 2223999999999865431
Q ss_pred HHHHHHHHhhhccCCeeeeeecccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCCccccCCCCC
Q 017771 260 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 339 (366)
Q Consensus 260 ~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~~~~~~~ 339 (366)
.+. .+.. +|.|+++...+.. ..+||.+.......+.+.||||||+ ..+. +..+.+..... .+...
T Consensus 175 -----~~~-~l~~-~l~d~~~~~~~~~---~~~t~~~~~~~~~~~~~~riD~i~~-~~~~--~~~~~v~~~~~--~~~~~ 239 (257)
T 3l1w_A 175 -----VHQ-LVQK-KFQDSKNLATHYG---PRGTFQNFTYTKPWAELEEIDYIYV-KGWQ--VQQTASLTDSI--DGRFP 239 (257)
T ss_dssp -----HHH-HHTT-TCEEGGGTSEEES---CSCCBCTTCTTCCGGGCBCCEEEEE-ESEE--EEEEEECCCCB--TTBCS
T ss_pred -----HHH-Hhhh-hccchhhhhcccC---CCCcccCCcccCCCCCCCceeEEEE-CCcE--EEEEEEeccCc--CCccc
Confidence 112 3333 4999998765432 4567765432222223489999999 6543 56677765321 13468
Q ss_pred CCCcceEEEeccCC
Q 017771 340 SDHCPVSLELSEAS 353 (366)
Q Consensus 340 SDH~Pv~~~l~~~~ 353 (366)
|||+||.++|.+..
T Consensus 240 SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 240 SDHFPLEAEVAGEN 253 (257)
T ss_dssp SSBCCEEEEEEEC-
T ss_pred CCcceEEEEEEEEe
Confidence 99999999999865
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.93 E-value=5.1e-25 Score=202.79 Aligned_cols=235 Identities=20% Similarity=0.239 Sum_probs=141.3
Q ss_pred CCcEEEEEeCccchhh-----hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 017771 40 DPLKFVTWNANSLLLR-----VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~~-----~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (366)
.+|||+||||++.... +..+...+.++|+..+||||||||+.... + ..+.+.
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l~~~ 58 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ------------F-----------QDLRAG 58 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH------------H-----------HHHHHH
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH------------H-----------HHHHHh
Confidence 4699999999776431 12344789999999999999999998432 1 122233
Q ss_pred hCCCCCCCceEEEecCCC---CcceEEEEE---ecCCCcceeeeccccc--cc---CCC-CCCCE-EEEEe------CCE
Q 017771 115 LSSPPFKNYQIWWSLADS---KYAGTALLV---KKCFQPKKVSFSLEKT--AL---KYE-PDGRV-ILAEF------ETF 175 (366)
Q Consensus 115 l~~~~~~~y~~~~~~~~~---~~~Gvails---r~~i~~~~~~~~~~~~--~~---~~~-~~~r~-i~~~~------~~l 175 (366)
| .+|.++...... ...+++||+ |.++... ..+.++.. .. .++ ...|. +.+.+ ..+
T Consensus 59 l-----~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~ 132 (267)
T 3g6s_A 59 L-----PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDS-NTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIF 132 (267)
T ss_dssp C-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEE-EEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEE
T ss_pred c-----cCCcEEEecCCCCCcCCceeEEEEEccceEEEec-ccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEE
Confidence 3 678776543222 233589994 4433211 11112110 00 011 12342 23332 259
Q ss_pred EEEEEeecCCCCcchhhhHHHHHHHHHHHHHHHHhc-CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCCCCCC
Q 017771 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 254 (366)
Q Consensus 176 ~v~nvh~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
.|+|+|+.+... ..|.++++.|.+++.+. .+.|+|||||||+.+.+.
T Consensus 133 ~v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~~------------------------- 180 (267)
T 3g6s_A 133 MAVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASD------------------------- 180 (267)
T ss_dssp EEEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTSH-------------------------
T ss_pred EEEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCCH-------------------------
Confidence 999999987651 12455566777777654 478999999999865431
Q ss_pred CCCCCHHHHHHHHhhhccC-CeeeeeecccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCCccc
Q 017771 255 QPGFTIAERKRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 333 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~-~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~~~~ 333 (366)
.+..+...+ +|.|+|+....... ..+||+...... ...+.||||||+++++. +..+.+.....
T Consensus 181 ----------~~~~l~~~~~~l~d~~~~~~~~~~--~~~T~~~~~~~~-~~~~~riD~I~~s~~~~--~~~~~v~~~~~- 244 (267)
T 3g6s_A 181 ----------AYETITTNEFVMKDAYKTAARVTG--VDYTFHDFARIP-AEDCEKIDFIFVTPQVL--VKSCEIPAEVP- 244 (267)
T ss_dssp ----------HHHHHHSSSSCCEEHHHHCSEEEE--CSCSBCTTTTSC-GGGCCCCEEEEECTTSE--EEEEEECCCCS-
T ss_pred ----------HHHHhhcCCcchhhhHhhhccccC--CCCCEeCCCCCC-CCCCCcEeEEEeCCCce--EEEEEEecCCC-
Confidence 123333332 39999987653211 356776532210 12348999999998754 67777765321
Q ss_pred cCCCCCCCCcceEEEeccCC
Q 017771 334 LEGFYGSDHCPVSLELSEAS 353 (366)
Q Consensus 334 ~~~~~~SDH~Pv~~~l~~~~ 353 (366)
.+ ..|||+||.+++....
T Consensus 245 -~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 245 -EA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp -SS-CCCSBCCEEEEEEEC-
T ss_pred -CC-CCCCcccEEEEEEecc
Confidence 12 5799999999998654
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.1e-23 Score=197.58 Aligned_cols=237 Identities=22% Similarity=0.216 Sum_probs=139.0
Q ss_pred CCCcEEEEEeCccchhh-h------hCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 017771 39 KDPLKFVTWNANSLLLR-V------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~-~------~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (366)
..+|||+||||+..... . ..+...++++|+..+||||||||+.... + ..+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~------------~-----------~~l 60 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQ------------L-----------KDM 60 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHH------------H-----------HHH
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHH------------H-----------HHH
Confidence 45799999999654321 1 1223679999999999999999997431 1 122
Q ss_pred HHhhCCCCCCCceEEEecCCC---CcceEEEE---EecCCCcceeeeccccc--ccC--CC-CCCCE-EEEEe------C
Q 017771 112 MRALSSPPFKNYQIWWSLADS---KYAGTALL---VKKCFQPKKVSFSLEKT--ALK--YE-PDGRV-ILAEF------E 173 (366)
Q Consensus 112 ~~~l~~~~~~~y~~~~~~~~~---~~~Gvail---sr~~i~~~~~~~~~~~~--~~~--~~-~~~r~-i~~~~------~ 173 (366)
.+.| .+|.++...... ...+++|| +|.++... ..+.+... ... ++ ...|. +.+.+ .
T Consensus 61 ~~~l-----~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~-~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~ 134 (298)
T 3mpr_A 61 KEAL-----PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEK-GDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGF 134 (298)
T ss_dssp HHHS-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEE-EEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCC
T ss_pred HHhC-----CCCcEEEEecCCCCCCCceeEEEEecCceEEEec-cEEEccCCCCccCcccccccCceeEEEEEEEcCCCC
Confidence 3333 577766443221 13358999 66654211 11212110 000 11 12343 22332 2
Q ss_pred CEEEEEEeecCCCCcchhhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCccCCcCcCcChhhhhhhhcCCCCCCCC
Q 017771 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 250 (366)
Q Consensus 174 ~l~v~nvh~~~~~~~~~~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~ 250 (366)
.+.|+|+|+.+.+. ..|.++++.+.+++.+. .+.|+|||||||+.+.+.
T Consensus 135 ~~~v~~~Hl~~~~~-------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~--------------------- 186 (298)
T 3mpr_A 135 EFLFFNLHMDHIGK-------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQ--------------------- 186 (298)
T ss_dssp EEEEEEEECCSSCH-------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSH---------------------
T ss_pred EEEEEEecCCCCCH-------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCH---------------------
Confidence 59999999986541 23555667777777653 478999999999866431
Q ss_pred CCCCCCCCCHHHHHHHHhhhccCCeeeeeecccCCCCCCcceeecCCCCCCCCCCcceeEEEEeChhhHhhheEEEEcCC
Q 017771 251 EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 330 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~~~~T~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~v~~~ 330 (366)
.+..+...++|.|++........ ..+||...... .....||||||+++++. +..+.+...
T Consensus 187 --------------~~~~l~~~g~l~D~~~~~~~~~~--~~~T~~~~~~~--~~~~~rID~Il~s~~~~--v~~~~v~~~ 246 (298)
T 3mpr_A 187 --------------SYDAFVSKGVLCDSYEKCDYRYA--LNGTFNNFDPN--SFTESRIDHIFVSPSFH--VKRYGVLTD 246 (298)
T ss_dssp --------------HHHHHHTTSSSEEHHHHCSEEEC--SSCSBCTTCTT--CCCSCCCEEEEECTTSE--EEEEEECCC
T ss_pred --------------HHHHHhcCCcchhhHhhhcccCC--CCCCccCCCCC--CCCCceEEEEEeCCCee--EEEEEEecC
Confidence 23444544458999876553211 24577643211 11358999999998764 556666532
Q ss_pred ccc-------------c---------CCCCCCCCcceEEEeccC
Q 017771 331 GIE-------------L---------EGFYGSDHCPVSLELSEA 352 (366)
Q Consensus 331 ~~~-------------~---------~~~~~SDH~Pv~~~l~~~ 352 (366)
... . .....|||+||++++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 247 TYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp CEEEECC----------------CCEEEECSSSBCCEEEEEEEC
T ss_pred ccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 100 0 001469999999998743
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.91 E-value=1.1e-23 Score=197.14 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCCcEEEEEeCccchhhh------hCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 017771 39 KDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~------~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (366)
...|||+||||+++.... ..+.+.+..++...+||||||||+..... .+.+.
T Consensus 8 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~----------------------~~~l~ 65 (301)
T 1zwx_A 8 PGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSA----------------------SHRLL 65 (301)
T ss_dssp CCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHH----------------------HHHHH
T ss_pred CCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHH----------------------HHHHH
Confidence 457999999998763210 11124466667889999999999975421 00111
Q ss_pred HhhCCCCCCCceEEEec---------------CCCCcceEEEEEecCCCcceeeeccccc--ccCCCCCCCEEEEEe--C
Q 017771 113 RALSSPPFKNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSLEKT--ALKYEPDGRVILAEF--E 173 (366)
Q Consensus 113 ~~l~~~~~~~y~~~~~~---------------~~~~~~Gvailsr~~i~~~~~~~~~~~~--~~~~~~~~r~i~~~~--~ 173 (366)
+.|.. ..+|.+.+.. ...+..|++||||+|+.... ...++.. ..... ...++.+.+ .
T Consensus 66 ~~l~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~-~~~~~~~~~~~~~~-~r~~~~~~~~~~ 141 (301)
T 1zwx_A 66 NNLRE--MYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKS-QHIFQRGGGADRLS-NKGFAYVKIMKN 141 (301)
T ss_dssp HHTTT--TCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEE-EEECSCCCGGGGGB-CCEEEEEEEEET
T ss_pred HHHhh--cCCccccccCCccccccccccccccccccCCCEEEEecCCcccce-EEEecCCCCccccc-CCCeEEEEEEEC
Confidence 22221 0222211110 01235699999999863221 1222210 00011 122444444 2
Q ss_pred --CEEEEEEeecCCCCcc-hhhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCccCCc
Q 017771 174 --TFYLLNTYAPNNGWKE-EENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (366)
Q Consensus 174 --~l~v~nvh~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 228 (366)
.+.|+|+|+++..... .......|..+++.|.+++.+. .+.|+|||||||+.+.+
T Consensus 142 g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 142 GKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp TEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred CEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc
Confidence 6999999999875321 0112334677788888888752 46799999999987653
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.89 E-value=4e-22 Score=186.71 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=92.2
Q ss_pred CCCCcEEEEEeCccchhh----h--hCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 017771 38 KKDPLKFVTWNANSLLLR----V--KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (366)
Q Consensus 38 ~~~~lrI~s~Ni~g~~~~----~--~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (366)
....|||+||||++.... . ..+.+.+..++...+||||||||+..... ...+
T Consensus 6 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~----------------------~~~l 63 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSA----------------------SDRL 63 (306)
T ss_dssp -CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHH----------------------HHHH
T ss_pred CCCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHH----------------------HHHH
Confidence 345799999999876421 0 11124466667888999999999965421 0011
Q ss_pred HHhhCCC-----------CCCCceEEEec---CCCCcceEEEEEecCCCcceeeecccccccCCCCCCC-EEEEEe--C-
Q 017771 112 MRALSSP-----------PFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E- 173 (366)
Q Consensus 112 ~~~l~~~-----------~~~~y~~~~~~---~~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r-~i~~~~--~- 173 (366)
.+.|... ...+|...+.. ...+..|++||||.|+.... ...++..........| ++.+.+ .
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~~-~~~~~~~~~~~~~~~r~~~~~~i~~~g 142 (306)
T 2ddr_A 64 LGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKI-QYVFAKGCGPDNLSNKGFVYTKIKKND 142 (306)
T ss_dssp HHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEE-EEECSCCC----CCCCEEEEEEEEETT
T ss_pred HHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCccccc-EEEcCCCCCcchhcCCCeEEEEEEeCC
Confidence 1122110 00133322211 12335799999999864221 1222210000001223 444443 3
Q ss_pred -CEEEEEEeecCCCCcch-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCccCCcC
Q 017771 174 -TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEI 229 (366)
Q Consensus 174 -~l~v~nvh~~~~~~~~~-~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~~ 229 (366)
.+.|+|+|+++...... ......|..+++.|.+++.+. .+.|+|||||||+.+...
T Consensus 143 ~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~ 203 (306)
T 2ddr_A 143 RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINA 203 (306)
T ss_dssp EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTT
T ss_pred EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccc
Confidence 59999999988753210 012334667778888888653 467999999999987543
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.88 E-value=5.1e-22 Score=188.16 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=93.8
Q ss_pred ccCCCCCcEEEEEeCccchhh------hhCCchhHHHHHhhcCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHH
Q 017771 35 ENSKKDPLKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEK 108 (366)
Q Consensus 35 ~~~~~~~lrI~s~Ni~g~~~~------~~~~~~~l~~~i~~~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (366)
+.....+|||+||||+++... ...+...+...+...+||||||||+..... .
T Consensus 23 ~~~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~----------------------~ 80 (317)
T 3i41_A 23 SKKDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGA----------------------S 80 (317)
T ss_dssp -----CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHH----------------------H
T ss_pred CCCCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHH----------------------H
Confidence 334567899999999875311 111224466677789999999999975421 0
Q ss_pred HHHHHhhCCCCCCCceEEEecC-CCC--------------cceEEEEEecCCCcceeeecccccccCCC-CCCC-EEEEE
Q 017771 109 LILMRALSSPPFKNYQIWWSLA-DSK--------------YAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGR-VILAE 171 (366)
Q Consensus 109 ~~~~~~l~~~~~~~y~~~~~~~-~~~--------------~~Gvailsr~~i~~~~~~~~~~~~~~~~~-~~~r-~i~~~ 171 (366)
+.+++.|... .+|.+..... ..+ ..|++||||.|+.... ...++... ..+ ...| ++.+.
T Consensus 81 ~~l~~~L~~~--~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~~~~~~-~~d~~~~r~~~~~~ 156 (317)
T 3i41_A 81 DKLLSNVKKE--YPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHVFKSGC-GFDNDSNKGFVYTK 156 (317)
T ss_dssp HHHHHHTTTT--CCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEECSCCC-SSGGGBCCEEEEEE
T ss_pred HHHHHHHHHh--CCcccccCCccccCccCcccccccccccCCccEEEeCCCCccce-eEECCCCC-CcccccCcceEEEE
Confidence 1122333211 2222111111 000 1599999999874332 12222100 111 1122 33333
Q ss_pred --eC--CEEEEEEeecCCCCcc-hhhhHHHHHHHHHHHHHHHHhc---CCCCEEEEccCCccCCc
Q 017771 172 --FE--TFYLLNTYAPNNGWKE-EENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 228 (366)
Q Consensus 172 --~~--~l~v~nvh~~~~~~~~-~~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~~ 228 (366)
.. .|.|+|+|+.+..... .......|..+++.|.+++++. .+.|+|||||||+.+.+
T Consensus 157 i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 157 IEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp EEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred EEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC
Confidence 33 5999999998876321 0112345777788888888763 57899999999987653
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.78 E-value=3.4e-18 Score=153.88 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=96.5
Q ss_pred CCCcEEEEEeCccchhhhhCCc-hhHHHHHhhcC-CcEEEEeeeecCC------CC-CCCCCccccccchhhhhhHHHHH
Q 017771 39 KDPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQEVRMPA------AG-SKDAPKNHQELKDDTKASREEKL 109 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~~~~~-~~l~~~i~~~~-~DIv~LQEv~~~~------~~-~~~~~~~~~~l~~~~~~~~~~~~ 109 (366)
-..+||+|||++|.......+| ..+..+|+..+ +|||+|||+.... .+ +........++.
T Consensus 13 ~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~----------- 81 (262)
T 2f1n_A 13 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELI----------- 81 (262)
T ss_dssp GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEE-----------
T ss_pred cceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHH-----------
Confidence 3468999999988542111112 35788999877 9999999997442 11 000000011110
Q ss_pred HHHHhhCCCCCCCceEEEecC---CCCcceEEEEEecCCCcceeeecccccccCCCCCCCEEEEEeCCEEEEEEeecCCC
Q 017771 110 ILMRALSSPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186 (366)
Q Consensus 110 ~~~~~l~~~~~~~y~~~~~~~---~~~~~Gvailsr~~i~~~~~~~~~~~~~~~~~~~~r~i~~~~~~l~v~nvh~~~~~ 186 (366)
..|.....+++.+++... ..++.|+||+||.++. + .+-++.. . ...+.++.+.+.++.++|+|+.+.+
T Consensus 82 ---w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~ad--e-v~vLp~~--~-~~~Rp~lgiri~~~~ff~tHa~a~~ 152 (262)
T 2f1n_A 82 ---WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRAD--E-VFVLSPV--R-QGGRPLLGIRIGNDAFFTAHAIAMR 152 (262)
T ss_dssp ---EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCS--E-EEEECCS--S-TTCCCEEEEEETTEEEEEEECCSSS
T ss_pred ---HHhCCCCCCceEEEEEeeccCCCCceeeEEEEccccc--c-eEECCCC--C-CCCCceEEEEECCEEEEEEEecCCC
Confidence 011100113365433322 2337799999999875 2 2224421 1 2245678888999999999999985
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhcCC-----CCEEEEccCCccCCc
Q 017771 187 WKEEENSFQRRRKWDKRIQEFVLQCSG-----KPLIWCGDLNVSHEE 228 (366)
Q Consensus 187 ~~~~~~~~~~r~~~~~~l~~~l~~~~~-----~p~Il~GDFN~~~~~ 228 (366)
. .+ +.++.+.+.+++..... .|+||+||||..|.+
T Consensus 153 g-~d------a~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 153 N-ND------APALVEEVYNFFRDSRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp S-CS------HHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHH
T ss_pred C-cc------HHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcc
Confidence 3 22 22335666676755444 599999999987764
No 24
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.78 E-value=6.3e-18 Score=155.20 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred cEEEEEeCccchhhhhCCchhHHHHHhhc--CCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCCCC
Q 017771 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF--DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (366)
Q Consensus 42 lrI~s~Ni~g~~~~~~~~~~~l~~~i~~~--~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (366)
|||+||||+++..... +...+.+.|.+. +||||||||+..... ..+ ..++++|+...
T Consensus 1 lrv~s~NI~~~g~~~~-~~~~~~~~i~~~~~~~DIv~LQEv~~~~~---------~~~-----------~~l~~~L~~~~ 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKM-SNATLASYIVRIVRRYDIVLIQEVRDSHL---------VAV-----------GKLLDYLNQDD 59 (260)
T ss_dssp CEEEEEEEEEESHHHH-HSHHHHHHHHHHHTTCSEEEEEEECCTTS---------HHH-----------HHHHHHHTSSS
T ss_pred CEEEEEehhhhCCCcc-chHHHHHHHHHHhccCCEEEEEEEEcCch---------hHH-----------HHHHHHHHhcc
Confidence 6999999986543211 113445555543 899999999976431 011 23345564332
Q ss_pred CCCceEEEecCCC---CcceEEEEEecCCCcceeeeccccc-----ccCCCCCCCEEEEEe-----CCEEEEEEeecCCC
Q 017771 120 FKNYQIWWSLADS---KYAGTALLVKKCFQPKKVSFSLEKT-----ALKYEPDGRVILAEF-----ETFYLLNTYAPNNG 186 (366)
Q Consensus 120 ~~~y~~~~~~~~~---~~~Gvailsr~~i~~~~~~~~~~~~-----~~~~~~~~r~i~~~~-----~~l~v~nvh~~~~~ 186 (366)
...|.++...... +..++++++|.+.........++.. ...+.+..+...+.. ..|.|+++|+.+..
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 3568777654221 2335899998763211111112210 001122233344442 36999999998654
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCC
Q 017771 187 WKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 227 (366)
Q Consensus 187 ~~~~~~~~~~r~~~~~~l~~~l~~-~~~~p~Il~GDFN~~~~ 227 (366)
.. . +.+.+..+.+.+.+ ....|+|||||||+.+.
T Consensus 140 ~~----~---q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 140 AV----A---EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp HH----H---HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred cH----H---HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 21 1 11122222222222 35789999999998655
No 25
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.77 E-value=1.1e-17 Score=162.55 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCccc--------------hhhhhCCchhHHHHHhhcCCcEEEEeeeecC
Q 017771 39 KDPLKFVTWNANSL--------------LLRVKNNWPEFSNFITTFDPDVIALQEVRMP 83 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~--------------~~~~~~~~~~l~~~i~~~~~DIv~LQEv~~~ 83 (366)
...|||+||||..- ...+..|...+.++|..++||||||||+...
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~ 87 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETE 87 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHH
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHH
Confidence 44799999999531 0112223467999999999999999999864
No 26
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.76 E-value=1.3e-17 Score=151.57 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=89.1
Q ss_pred CCcEEEEEeCccchhhhhCCch-hHHHHHhh-cCCcEEEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHHHhhCC
Q 017771 40 DPLKFVTWNANSLLLRVKNNWP-EFSNFITT-FDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~-~l~~~i~~-~~~DIv~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (366)
..+||+||||+|.......+|. .+..+|+. .+||||+|||+.......... +++.++-.....| . .-.|..
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~----~r~~~~~g~~v~e--~-~w~lg~ 75 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRT----SRVIQHGGTPIEE--Y-TWNLGT 75 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEEC----SCCCCCSSSCCEE--E-EEESSC
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccc----hhhhcccCCchhh--h-hhhccc
Confidence 3589999999874221111223 58999999 889999999997543211000 0110000000000 0 000000
Q ss_pred CCCCCceE-EEecC--CCCcceEEEEEecCCCcceeeecccccccC-CCCCCCEEEEEeCCEEEEEEeecCCCCcchhhh
Q 017771 118 PPFKNYQI-WWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193 (366)
Q Consensus 118 ~~~~~y~~-~~~~~--~~~~~Gvailsr~~i~~~~~~~~~~~~~~~-~~~~~r~i~~~~~~l~v~nvh~~~~~~~~~~~~ 193 (366)
...+++.+ |+..- ..+..|+||+||.++.. .+.++. .. ......++.+.++++.|+++|+.+... .+
T Consensus 76 ~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~~~~---v~~l~~--~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~-~e--- 146 (261)
T 1sr4_B 76 RSRPNMVYIYYSRLDVGANRVNLAIVSRRQADE---AFIVHS--DSSVLQSRPAVGIRIGTDVFFTVHALATGG-SD--- 146 (261)
T ss_dssp SSSCCEEEEEEECCCTTTSCSCEEEEESSCCSE---EEEECC--CCCSSCCCCEEEEEETTEEEEEEECCTTTT-TT---
T ss_pred ccCCCceEEEEEeecCCCCccceEEEEccchhc---eEEcCC--CCCCCcCcceEEEEECCeEEEEeCCCCCCC-ch---
Confidence 00123333 33321 22356999999997532 222321 11 011344777888889999999998862 22
Q ss_pred HHHHHHHHHHHHHHHHhc---CC---CCEEEEccCCccC
Q 017771 194 FQRRRKWDKRIQEFVLQC---SG---KPLIWCGDLNVSH 226 (366)
Q Consensus 194 ~~~r~~~~~~l~~~l~~~---~~---~p~Il~GDFN~~~ 226 (366)
+......+.+++... .. .++|||||||..+
T Consensus 147 ---a~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p 182 (261)
T 1sr4_B 147 ---AVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAP 182 (261)
T ss_dssp ---HHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCH
T ss_pred ---HHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCCh
Confidence 122244566665432 34 6999999999753
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=9e-19 Score=183.45 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCcc--chh------------hhhCCchhHHHHHhhcCCcEEEEeeeecC
Q 017771 38 KKDPLKFVTWNANS--LLL------------RVKNNWPEFSNFITTFDPDVIALQEVRMP 83 (366)
Q Consensus 38 ~~~~lrI~s~Ni~g--~~~------------~~~~~~~~l~~~i~~~~~DIv~LQEv~~~ 83 (366)
....+++++||+.. +.. .+..|...+.++|..++|||||||||...
T Consensus 391 ~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~ 450 (727)
T 4b8c_D 391 AKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESK 450 (727)
T ss_dssp -----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHH
T ss_pred cccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHH
Confidence 34568999999953 110 12223367899999999999999999753
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.49 E-value=2.1e-14 Score=133.58 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=78.2
Q ss_pred CCCCCcEEEEEeCccchhhhhCCchhHHHHHh---hcCCcE--EEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHH
Q 017771 37 SKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (366)
Q Consensus 37 ~~~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~---~~~~DI--v~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (366)
.+.-.|+|+||||++.... +.+.+|+. ..+||| |||||+........ ....+. +.+
T Consensus 4 ~~~~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~----~~~~w~----------~~l 64 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQ----QGPACV----------KNF 64 (282)
T ss_dssp CSEEEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTC----CHHHHH----------HHH
T ss_pred CCCcEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccch----hhHHHH----------HHH
Confidence 3445699999999765322 13445554 688996 59999975432100 000111 122
Q ss_pred HHhhCCCCCCCceEEEecCCCCcceE--EEEEecCCCcc-e-ee-ecccccccCCCCCC-CEEEEEeC--CEEEEEEeec
Q 017771 112 MRALSSPPFKNYQIWWSLADSKYAGT--ALLVKKCFQPK-K-VS-FSLEKTALKYEPDG-RVILAEFE--TFYLLNTYAP 183 (366)
Q Consensus 112 ~~~l~~~~~~~y~~~~~~~~~~~~Gv--ailsr~~i~~~-~-~~-~~~~~~~~~~~~~~-r~i~~~~~--~l~v~nvh~~ 183 (366)
.+.|. ..+|..+.+. ..+..|. ++++|.++.+. . .. .++.+ .+...| ..+.+... .++++|+|+.
T Consensus 65 ~~~L~---~~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g---~~g~kGav~~r~~~~~~~~~fvn~HL~ 137 (282)
T 2imq_X 65 QSLLT---SKGYTKLKNT-ITETMGLTVYCLEKHLDQNTLKNETIIVTVD---DQKKSGGIVTSFTIYNKRFSFTTSRMS 137 (282)
T ss_dssp HHHHH---HTTEEEEEEE-ECSSEEEEEEEEGGGCCTTTCCCEEEEEECS---TTSCSEEEEEEEEETTEEEEEEEEECC
T ss_pred HHhcC---CCceEEEEec-cCceeEEEEEEEEccccCccceeeeeccccc---cccCCceEEEEEEECCEEEEEEEECCC
Confidence 33332 0355554432 1233444 45557764321 1 11 11111 111112 12233333 5999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHh-cCCCCEEEEccCCccCC
Q 017771 184 NNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHE 227 (366)
Q Consensus 184 ~~~~~~~~~~~~~r~~~~~~l~~~l~~-~~~~p~Il~GDFN~~~~ 227 (366)
+.....+. |.+..+.+.+.+.. ....++|+|||||....
T Consensus 138 ~~~~~~~~-----R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 138 DEDVTSTN-----TKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp TTCCCTTS-----SSSSCCGGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred CCCchHHH-----HHHHHHHHHHhhhccCccceEEEecccccccC
Confidence 97532211 11112223233322 24568999999997644
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.45 E-value=8.6e-13 Score=125.80 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCcEEEEEeCccchhhhhCCchhHHHHHhh---cCCcE--EEEeeeec-CCCCCCC-CCccccccchhhhhhHHHHHHHH
Q 017771 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQEVRM-PAAGSKD-APKNHQELKDDTKASREEKLILM 112 (366)
Q Consensus 40 ~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~---~~~DI--v~LQEv~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 112 (366)
-.+.|+||||+|.... ..|.+||.. ..||| |||||+.. ....+.. .+.....+ .+.+.
T Consensus 25 ~~i~v~TwNv~g~~~~-----~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w----------~~~i~ 89 (347)
T 1i9z_A 25 VKIFVASYNLNGCSAT-----TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW----------ESCVK 89 (347)
T ss_dssp EEEEEEEEECTTCCCC-----SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHH----------HHHHH
T ss_pred cEEEEEeEecCCCCCc-----hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHH----------HHHHH
Confidence 4589999999887642 248888874 68999 89999843 3221110 00000001 12233
Q ss_pred HhhCCC--CCCCceEEEecCCCCcceEEEEEecCCCcce--ee-----ecccccccCCCCCC-CEEEEEeC--CEEEEEE
Q 017771 113 RALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPKK--VS-----FSLEKTALKYEPDG-RVILAEFE--TFYLLNT 180 (366)
Q Consensus 113 ~~l~~~--~~~~y~~~~~~~~~~~~Gvailsr~~i~~~~--~~-----~~~~~~~~~~~~~~-r~i~~~~~--~l~v~nv 180 (366)
++|... ....|..+.+. .-+.-+++||+|.++.+.. +. .++.+ .....| ..+.+.+. .++++|+
T Consensus 90 ~~L~~~~~~~~~Y~~v~s~-~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gnKGav~vr~~~~~~~l~fvn~ 165 (347)
T 1i9z_A 90 RLLNGKCTSGPGYVQLRSG-QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG---VSGNKGAVAIRFDYEDTGLCFITS 165 (347)
T ss_dssp HHHHHTCCSSCCEEEEEEE-EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-------CCEEEEEEEEETTEEEEEEEE
T ss_pred HHHhhcccCCCceeEEEEe-eccceEEEEEEehHhhhhccceeeeeEeccCCC---ccCCCceEEEEEEECCeEEEEEEe
Confidence 444311 11455544432 2223467899999875321 11 22221 111122 12334443 6999999
Q ss_pred eecCCCCcchhhhHHHHHHHHHHHHHHHHh------cCCCCEEEEccCCcc
Q 017771 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVS 225 (366)
Q Consensus 181 h~~~~~~~~~~~~~~~r~~~~~~l~~~l~~------~~~~p~Il~GDFN~~ 225 (366)
|+.++.... .+|......+.+.+.- ....++|+|||||-.
T Consensus 166 HLaa~~~~~-----~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyR 211 (347)
T 1i9z_A 166 HLAAGYTNY-----DERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYR 211 (347)
T ss_dssp ECCCCSSCH-----HHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCC
T ss_pred cCCCCCccH-----HHHHHHHHHHHHhhccCcccccccCccEEEecccccc
Confidence 999987532 2243334444443320 134689999999954
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.25 E-value=3.9e-11 Score=114.66 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCcEEEEEeCccchhhhhCCchhHHHHHh----hcCCcE--EEEeeeecCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 017771 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (366)
Q Consensus 39 ~~~lrI~s~Ni~g~~~~~~~~~~~l~~~i~----~~~~DI--v~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (366)
.-.|.|+||||+|..... ..+.+|+. ...||| |+|||+..... .+. +.+.
T Consensus 25 ~l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~----------~W~----------~~l~ 80 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDRR----------EWE----------TRLQ 80 (357)
T ss_dssp EEEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCHH----------HHH----------HHHH
T ss_pred CceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchHH----------HHH----------HHHH
Confidence 345889999999854322 23556654 357996 88999964321 111 1223
Q ss_pred HhhCCCCCCCceEEEecCCCCcceEEEEEecCCCcc----e---eeecccccccCCCCCC-CEEEEEeC--CEEEEEEee
Q 017771 113 RALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----K---VSFSLEKTALKYEPDG-RVILAEFE--TFYLLNTYA 182 (366)
Q Consensus 113 ~~l~~~~~~~y~~~~~~~~~~~~Gvailsr~~i~~~----~---~~~~~~~~~~~~~~~~-r~i~~~~~--~l~v~nvh~ 182 (366)
+.|. ..|..+.+. .-+..+++||+|.++.+. + +..++.+ .+...| ..+.+.+. .|+++|+|+
T Consensus 81 ~~L~----~~Y~~v~s~-~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gNKGav~vr~~~~~t~~~Fvn~HL 152 (357)
T 2xsw_A 81 ETLG----PHYVLLSSA-AHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVS---QIKTKGALGISFTFFGTSFLFITSHF 152 (357)
T ss_dssp HHHC----TTEEEEEEE-EETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEE---TTEEEEEEEEEEEETTEEEEEEEEEC
T ss_pred HHhC----Ccccchhhh-hhhhEEEEEEEchHHhhcCceeEeccccccccc---ccccccEEEEEEEECCeEEEEEEEcc
Confidence 3442 456554432 223446889999976321 1 1111111 011112 12334443 699999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHh------------------cCCCCEEEEccCCccCC
Q 017771 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNVSHE 227 (366)
Q Consensus 183 ~~~~~~~~~~~~~~r~~~~~~l~~~l~~------------------~~~~p~Il~GDFN~~~~ 227 (366)
.++... ..+|.+....+.+.+.- .....+|++||||-...
T Consensus 153 aa~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 153 TSGDGK-----VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp CCSTTC-----HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred CCCCch-----HHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc
Confidence 998743 22343334444444321 02367999999997554
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.02 E-value=6.6e-09 Score=96.94 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=83.7
Q ss_pred CcEEEEEeCccchhhhhCCchhHHHHHhh--cCCc--EEEEeeeecCCCC-CCCCCccccccchhhhhhHHHH-HHHHHh
Q 017771 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQEVRMPAAG-SKDAPKNHQELKDDTKASREEK-LILMRA 114 (366)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~--~~~D--Iv~LQEv~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 114 (366)
.+.|+||||+|.... +.+.+||.. ..|| ||+|||+...... +...+.. ..++ +.+.++
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~-----------~~~W~~~i~~~ 72 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPK-----------EEEWFKAVSEG 72 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHH-----------HHHHHHHHHHH
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcch-----------HHHHHHHHHHh
Confidence 467899999997542 357888875 6799 7999999643211 1110000 0122 233344
Q ss_pred hCCCCCCCceEEEecCCCCcce--EEEEEecCCCcc-------eeeecccccccCCCCCC-CEEEEEeC--CEEEEEEee
Q 017771 115 LSSPPFKNYQIWWSLADSKYAG--TALLVKKCFQPK-------KVSFSLEKTALKYEPDG-RVILAEFE--TFYLLNTYA 182 (366)
Q Consensus 115 l~~~~~~~y~~~~~~~~~~~~G--vailsr~~i~~~-------~~~~~~~~~~~~~~~~~-r~i~~~~~--~l~v~nvh~ 182 (366)
|.. ...|..+.+. ...| +.+++|..+.+. .+..|+.+ .+...| ..+.+.+. .++++|.|+
T Consensus 73 L~~--~~~Y~~v~s~---~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~cFVnsHL 144 (313)
T 3mtc_A 73 LHP--DAKYAKVKLI---RLVGIMLLLYVKQEHAAYISEVEAETVGTGIMG---RMGNKGGVAIRFQFHNTSICVVNSHL 144 (313)
T ss_dssp SCT--TSCEEEEEEE---EETTEEEEEEEEGGGGGGEEEEEEEEEECSGGG---TSTTSEEEEEEEEETTEEEEEEEEEC
T ss_pred cCC--CCCEEEEEEe---chhhhhhhhhhhhhhhhhcceeEeeeecccccc---cccCCceEEEEEEECCcEEEEEeecc
Confidence 531 1356655442 2234 457778765321 11222221 122223 23344443 699999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHhc------------CCCCEEEEccCCccCC
Q 017771 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQC------------SGKPLIWCGDLNVSHE 227 (366)
Q Consensus 183 ~~~~~~~~~~~~~~r~~~~~~l~~~l~~~------------~~~p~Il~GDFN~~~~ 227 (366)
.++... ..+|.+-...+.+.+.-. ....++++||||-...
T Consensus 145 aA~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 145 AAHIEE-----YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp CCSGGG-----HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred CCCchH-----HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 988732 333433333444433210 1234899999997554
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.60 E-value=2.9e-07 Score=86.03 Aligned_cols=152 Identities=21% Similarity=0.222 Sum_probs=77.3
Q ss_pred CcEEEEEeCccchhhhhCCchhHHHHHhh-------------cCCcEE--EEeeeecCCCCCCCCCccccccchhhhhhH
Q 017771 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQEVRMPAAGSKDAPKNHQELKDDTKASR 105 (366)
Q Consensus 41 ~lrI~s~Ni~g~~~~~~~~~~~l~~~i~~-------------~~~DIv--~LQEv~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (366)
++-|.||||+|.... +.|.+||.- ..|||+ +|||+.... ..+.+
T Consensus 9 ~i~vgTwNv~g~~p~-----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~----------~~W~~------ 67 (316)
T 4a9c_A 9 SVFIGTWNMGSVPPP-----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD----------REWLD------ 67 (316)
T ss_dssp EEEEEEEECTTSCCC-----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCH----------HHHHH------
T ss_pred EEEEEEeEcCCcCCC-----cchhHhhcccccccCcccccccCCCcEEEEeccccccch----------hHHHH------
Confidence 477899999885432 347778752 347887 999985322 12221
Q ss_pred HHHHHHHHhhCCCCCCCceEEEecCCCCcceEEEEEecCCCcc--e-----eeecccccccCCCCCC-CEEEEEeC--CE
Q 017771 106 EEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--K-----VSFSLEKTALKYEPDG-RVILAEFE--TF 175 (366)
Q Consensus 106 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~Gvailsr~~i~~~--~-----~~~~~~~~~~~~~~~~-r~i~~~~~--~l 175 (366)
.+.+.|.......|..+.+. .-..-.++||+|..+.+. . +..++.+ .+...| ..+.+.+. .|
T Consensus 68 ----~i~~~L~~~~~~~Y~~v~s~-~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~ 139 (316)
T 4a9c_A 68 ----LLRGGLKELTDLDYRPIAMQ-SLWNIKVAVLVKPEHENRISHVSTSSVKTGIAN---TLGNKGAVGVSFMFNGTSF 139 (316)
T ss_dssp ----HHHHHHHHHHSCCCEEEEEE-EETTEEEEEEECGGGGGGEEEEEEEEEEEC---------CEEEEEEEEEETTEEE
T ss_pred ----HHHHHhccccCCCEEEEEee-eehheeeeeEEeHHHhhhCcccccceeeeeeeE---ecCCCceEEEEEEECCcEE
Confidence 22233321111356655442 112235678889876431 1 1122221 111122 22344443 69
Q ss_pred EEEEEeecCCCCcchhhhHHHHHHHHHHHHHHHHh------c-----CCCCEEEEccCCccC
Q 017771 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------C-----SGKPLIWCGDLNVSH 226 (366)
Q Consensus 176 ~v~nvh~~~~~~~~~~~~~~~r~~~~~~l~~~l~~------~-----~~~p~Il~GDFN~~~ 226 (366)
+++|.|+.++... ..+|.+-...+.+.+.- . .-..++++||||-..
T Consensus 140 ~FVn~HLaAg~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 140 GFVNCHLTSGNEK-----TARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp EEEEEECCCSTTC-----HHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred EEEEeccccCchH-----HHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 9999999987743 22343323333333210 0 113489999999754
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=27.36 E-value=37 Score=30.13 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=26.5
Q ss_pred CCCCCcEEEE--EeCccchhhhhCCchhHHHHHh---hcCCcEEEEeeeecCCC
Q 017771 37 SKKDPLKFVT--WNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMPAA 85 (366)
Q Consensus 37 ~~~~~lrI~s--~Ni~g~~~~~~~~~~~l~~~i~---~~~~DIv~LQEv~~~~~ 85 (366)
.....|||.. .|+.-.. ...+++.+.++++ +.++|+|+|.|+.....
T Consensus 16 ~~~~~~kva~~Q~~~~~~d--~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy 67 (281)
T 3p8k_A 16 PRGSHMKVQIYQLPIVFGD--SSKNETQITQWFEKNMNAEVDVVVLPEMWNNGY 67 (281)
T ss_dssp CTTSEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTT
T ss_pred ccCCCcEEEEEeccCCcCC--HHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCC
Confidence 3444565555 5653111 1112234555554 45899999999977653
Done!