BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017773
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 29 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 81
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 82 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 217 YDVRKMV---------DPV---------------------------------LVFDGHRK 234
+DV+ + DPV + D
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 256 VSGSEDNMVYIWNLQTKEIV 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 28 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 80
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 138
Query: 305 VRWG 308
V+ G
Sbjct: 139 VKTG 142
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + + H V +V +++ D L S S DG ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 181 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 234
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 48 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 100
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 101 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 155
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 274
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 275 VSGSEDNLVYIWNLQTKEIV 294
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 47 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 99
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 157
Query: 305 VRWGE 309
V+ G+
Sbjct: 158 VKTGK 162
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170
++ SG +D V +D++ + H V +V +++ D L S S DG ++W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIW 198
Query: 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVF 229
D G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 199 DTA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TY 252
Query: 230 DGHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 253 TGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 50 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 102
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 103 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 157
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 276
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 277 VSGSEDNLVYIWNLQTKEIV 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 49 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 101
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 159
Query: 305 VRWGE 309
V+ G+
Sbjct: 160 VKTGK 164
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 201
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 202 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 255
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 256 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 304
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
++GS D+ V Y+ +KV FE R S+ P + SGSDD T+++W+
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR---SIAVHPTKPYV-LSGSDDLTVKLWNW 126
Query: 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232
+ T + V CV F+P S A+GC D+ + + + + G
Sbjct: 127 E-NNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 233 RKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279
+ V Y+ + D ++TA D +K+W+ + T +GH++N +F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS 147
KV D+ P + S+ P T VL SG D V ++ E + + E V
Sbjct: 89 KVVDFE-AHPDYIRSIAVHP-TKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA 207
V ++ DP ASG D T+++W G + + V V+++P
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 208 GCADK---KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT-DGCLKLWNVND 263
+D K + Y + V +GH V++ F ++ +G+ DG LK+WN +
Sbjct: 203 TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 264 SRVIRT 269
+V +T
Sbjct: 260 YKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
++GS D+ V Y+ +KV FE R S+ P + SGSDD T+++W+
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR---SIAVHPTKPYV-LSGSDDLTVKLWNW 126
Query: 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232
+ T + V CV F+P S A+GC D+ + + + + G
Sbjct: 127 E-NNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 233 RKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279
+ V Y+ + D ++TA D +K+W+ + T +GH++N +F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS 147
KV D+ P + S+ P T VL SG D V ++ E + + E V
Sbjct: 89 KVVDFE-AHPDYIRSIAVHP-TKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA 207
V ++ DP ASG D T+++W G + + V V+++P
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 208 GCADK---KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT-DGCLKLWNVND 263
+D K + Y + V +GH V++ F ++ +G+ DG LK+WN +
Sbjct: 203 TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 264 SRVIRT 269
+V +T
Sbjct: 260 YKVEKT 265
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 32 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 84
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 85 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 258
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 259 VSGSEDNLVYIWNLQTKEIV 278
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 31 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 83
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 141
Query: 305 VRWGE 309
V+ G+
Sbjct: 142 VKTGK 146
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 184 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 237
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 27 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 79
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 80 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 134
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 253
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 254 VSGSEDNLVYIWNLQTKEIV 273
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 26 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 78
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 136
Query: 305 VRWGE 309
V+ G+
Sbjct: 137 VKTGK 141
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 178
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 179 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 232
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 233 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 281
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 26 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 78
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 79 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 133
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 252
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 253 VSGSEDNLVYIWNLQTKEIV 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 25 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 77
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 135
Query: 305 VRWGE 309
V+ G+
Sbjct: 136 VKTGK 140
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 178 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 231
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 232 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 43 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 95
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 96 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 150
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 269
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 270 VSGSEDNLVYIWNLQTKEIV 289
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 42 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 94
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 152
Query: 305 VRWGE 309
V+ G+
Sbjct: 153 VKTGK 157
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 194
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 195 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 248
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 249 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 22 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 74
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 75 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 129
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 248
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 249 VSGSEDNLVYIWNLQTKEIV 268
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 21 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 73
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 131
Query: 305 VRWGE 309
V+ G+
Sbjct: 132 VKTGK 136
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 173
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 174 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 227
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 228 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 276
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 26 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 78
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 79 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 133
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 252
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 253 VSGSEDNLVYIWNLQTKEIV 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 25 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 77
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 135
Query: 305 VRWGE 309
V+ G+
Sbjct: 136 VKTGK 140
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 178 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 231
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 232 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 32 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 84
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 85 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 258
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 259 VSGSEDNLVYIWNLQTKEIV 278
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 31 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 83
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 141
Query: 305 VRWGE 309
V+ G+
Sbjct: 142 VKTGK 146
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 184 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 237
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 31 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 83
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 84 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 138
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 257
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 258 VSGSEDNLVYIWNLQTKEIV 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 30 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 82
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 140
Query: 305 VRWGE 309
V+ G+
Sbjct: 141 VKTGK 145
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 182
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 183 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 236
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 237 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 285
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 29 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 81
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 82 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 217 YDVRKMV---------DPV---------------------------------LVFDGHRK 234
+DV+ + DPV + D
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 256 VSGSEDNMVYIWNLQTKEIV 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 28 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 80
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 138
Query: 305 VRWG 308
V+ G
Sbjct: 139 VKTG 142
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + + H V +V +++ D L S S DG ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP-VSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA D K + Y K + +
Sbjct: 181 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK---TYT 234
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 32 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 84
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 85 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 258
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 259 VSGSEDNLVYIWNLQTKEIV 278
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 31 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 83
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 141
Query: 305 VRWGE 309
V+ G+
Sbjct: 142 VKTGK 146
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 184 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 237
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 25 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 77
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ + V C F+P S+L+ +G D+
Sbjct: 78 LLVSASDDKTLKIWD--VSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRI 132
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 251
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 252 VSGSEDNLVYIWNLQTKEIV 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 24 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 76
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 134
Query: 305 VRWGE 309
V+ G+
Sbjct: 135 VKTGK 139
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 176
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 177 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 230
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 231 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 29 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 81
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ ++ V C F+P S+L+ +G D+
Sbjct: 82 LLVSASDDKTLKIWD--VSSGKCLKTLKGHSNY--VFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 256 VSGSEDNLVYIWNLQTKEIV 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 28 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 80
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 138
Query: 305 VRWGE 309
V+ G+
Sbjct: 139 VKTGK 143
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 181 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 234
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L S D ++ YD + FE+ G + S D
Sbjct: 29 VSSVKFSP--NGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 81
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ ++ V C F+P S+L+ +G D+
Sbjct: 82 LLVSASDDKTLKIWD--VSSGKCLKTLKGHSNY--VFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 256 VSGSEDNLVYIWNLQTKEIV 275
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L A+ ADK AY K + GH+ ++ + + D
Sbjct: 28 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 80
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 138
Query: 305 VRWGE 309
V+ G+
Sbjct: 139 VKTGK 143
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 181 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 234
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
++GS D+ V Y+ +KV FE R S+ P + SGSDD T+++W+
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR---SIAVHPTKPYV-LSGSDDLTVKLWNW 126
Query: 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232
+ T + V CV F+P S A+GC D+ + + + + G
Sbjct: 127 E-NNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 233 RKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279
+ V Y+ + D ++TA D +K+W+ + T +GH++N +F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS 147
KV D+ P + S+ P T VL SG D V ++ E + + E V
Sbjct: 89 KVVDFE-AHPDYIRSIAVHP-TKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA 207
V ++ DP ASG D T+++W G + + V V+++P
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 208 GCADK---KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT-DGCLKLWNVND 263
+D K + Y + V +GH V++ F ++ +G+ DG LK+WN +
Sbjct: 203 TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 264 SRVIRT 269
+V +T
Sbjct: 260 YKVEKT 265
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
++GS D+ V Y+ +KV FE R S+ P + SGSDD T+++W+
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR---SIAVHPTKPYV-LSGSDDLTVKLWNW 126
Query: 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232
+ T + V CV F+P S A+GC D+ + + + + G
Sbjct: 127 E-NNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 233 RKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279
+ V Y+ + D ++TA D +K+W+ + T +GH++N +F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 135 FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194
FE EH V V ++ DP ASG D T+++W G + + V
Sbjct: 136 FEGHEH---FVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNY 189
Query: 195 VEFHPFGSSLVAAGCADK---KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAG 251
V+++P +D K + Y + V +GH V++ F ++ +G
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 252 T-DGCLKLWNVNDSRVIRT 269
+ DG LK+WN + +V +T
Sbjct: 247 SEDGTLKIWNSSTYKVEKT 265
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 109/260 (41%), Gaps = 61/260 (23%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVM---EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156
+SS+K+ P +G L + D ++ YD + FE+ G + S D
Sbjct: 29 VSSVKFSP--NGEWLAASSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSN 81
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L S SDD T+++WD GKC+ T++ ++ V C F+P S+L+ +G D+
Sbjct: 82 LLVSASDDKTLKIWD--VSSGKCLKTLKGHSNY--VFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 217 YDVRK---------MVDPV---------------------------------LVFDGHRK 234
+DV+ DPV + D
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 235 TVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRN--FVGLSVWRHGGLL 291
V++++F + A T D LKLW+ + + ++TY GH N + F SV G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 292 GCGSETNQVFVYDVRWGEPV 311
GSE N V++++++ E V
Sbjct: 256 VSGSEDNLVYIWNLQTKEIV 275
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 191 AVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244
AV V+F P G L AA ADK AY K + GH+ ++ + + D
Sbjct: 28 AVSSVKFSPNGEWL-AASSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDS 80
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ LV+A D LK+W+V+ + ++T KGH N + L+ GS V ++D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWD 138
Query: 305 VRWGE 309
V+ G+
Sbjct: 139 VKTGK 143
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
++ SG +D V +D++ + H V +V +++ D L S S DG ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFD 230
G+C+ T+ V V+F P G ++AA + K + Y K + +
Sbjct: 181 TA--SGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYT 234
Query: 231 GHRKTVTYIRFLDVDT-----LVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH K Y F + +V+ D + +WN+ +++ +GH +
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 103 LKWKPGTSGRVLGSGDYDGVVMEYDL-----EKKVPIFERDEHGGRR--VWSVDYSKGDP 155
L W P SG +L + D D + +D+ E KV + + G V V +
Sbjct: 183 LSWNPNLSGHLLSASD-DHTICLWDISAVPKEGKV-VDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA----VCCVEFHPFGSSLVAAGCAD 211
L S +DD + +WD R + +T +PS S A V C+ F+P+ ++A G AD
Sbjct: 241 SLFGSVADDQKLMIWDTRSN-----NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNVN 262
K +D+R + + F+ H+ + +++ + L ++GTD L +W+++
Sbjct: 296 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 103 LKWKPGTSGRVLGSGDYDGVVMEYDL-----EKKVPIFERDEHGGRR--VWSVDYSKGDP 155
L W P +G +L + D D + +D+ E +V I ++ G V V +
Sbjct: 187 LSWNPNLNGYLLSASD-DHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGCAD 211
L S +DD + +WD R + +T +PS A + V C+ F+P+ ++A G AD
Sbjct: 245 SLFGSVADDQKLMIWDTRNN-----NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNV 261
K +D+R + + F+ H+ + +++ + L ++GTD L +W++
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 103 LKWKPGTSGRVLGSGDYDGVVMEYDL-----EKKVPIFERDEHGGRR--VWSVDYSKGDP 155
L W P +G +L + D D + +D+ E +V I ++ G V V +
Sbjct: 189 LSWNPNLNGYLLSASD-DHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHE 246
Query: 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGCAD 211
L S +DD + +WD R + +T +PS A + V C+ F+P+ ++A G AD
Sbjct: 247 SLFGSVADDQKLMIWDTRNN-----NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNV 261
K +D+R + + F+ H+ + +++ + L ++GTD L +W++
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 103 LKWKPGTSGRVLGSGDYDGVVMEYDL-----EKKVPIFERDEHGGRR--VWSVDYSKGDP 155
L W P +G +L + D D + +D+ E +V I ++ G V V +
Sbjct: 191 LSWNPNLNGYLLSASD-DHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHE 248
Query: 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGCAD 211
L S +DD + +WD R + +T +PS A + V C+ F+P+ ++A G AD
Sbjct: 249 SLFGSVADDQKLMIWDTRNN-----NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNV 261
K +D+R + + F+ H+ + +++ + L ++GTD L +W++
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGCADK 212
L S +DD + +WD R + +T +PS A + V C+ F+P+ ++A G ADK
Sbjct: 244 LFGSVADDQKLMIWDTRSN-----TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNVN 262
+D+R + + F+ H+ + + + + L ++GTD L +W+++
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGCADK 212
L S +DD + +WD R + +T +PS A + V C+ F+P+ ++A G ADK
Sbjct: 244 LFGSVADDQKLXIWDTRSN-----TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNVN 262
+D+R + + F+ H+ + + + + L ++GTD L +W+++
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 24/253 (9%)
Query: 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170
G+ SG +DG + +DL H + V SV +S + + SGS D T+++W
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-KDVLSVAFSSDNRQI-VSGSRDKTIKLW 132
Query: 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-DKKAYAYDVR--KMVDPVL 227
+ G C TVQ + V CV F P S+ + C DK +++ K+ +
Sbjct: 133 NTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 228 VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH--VNNRNFVGLSVW 285
G+ TVT D + G DG LW++N+ + + T G +N F W
Sbjct: 190 GHTGYLNTVTVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 247
Query: 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV--TAAGSERGFVSSVCWRRVGEDECT 343
C + + ++D+ G+ + + V T++ +E +S+ W G+ T
Sbjct: 248 L------CAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ---T 297
Query: 344 LVAGGSDGLLHVF 356
L AG +D L+ V+
Sbjct: 298 LFAGYTDNLVRVW 310
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 24/253 (9%)
Query: 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170
G+ SG +DG + +DL H + V SV +S + + SGS D T+++W
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-KDVLSVAFSSDNRQI-VSGSRDKTIKLW 155
Query: 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-DKKAYAYDVR--KMVDPVL 227
+ G C TVQ + V CV F P S+ + C DK +++ K+ +
Sbjct: 156 NTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 228 VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH--VNNRNFVGLSVW 285
G+ TVT D + G DG LW++N+ + + T G +N F W
Sbjct: 213 GHTGYLNTVTVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270
Query: 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV--TAAGSERGFVSSVCWRRVGEDECT 343
C + + ++D+ G+ + + V T++ +E +S+ W G+ T
Sbjct: 271 L------CAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ---T 320
Query: 344 LVAGGSDGLLHVF 356
L AG +D L+ V+
Sbjct: 321 LFAGYTDNLVRVW 333
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170
GR + SG YD +V +D E + + H R V+S+ + D + SGS D ++++W
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-VYSLQF---DGIHVVSGSLDTSIRVW 304
Query: 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR--KMVDPVLV 228
D + G C+ T+ S ++ +++ +G AD +D++ + + +
Sbjct: 305 D--VETGNCIHTLTGHQSLTS-----GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 229 FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIR 268
+ H+ VT ++F + + ++T+ DG +KLW++ IR
Sbjct: 358 PNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 396
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
SGS D T+++WD + G+C+ + + AV CV++ G +V+ AY +
Sbjct: 213 VSGSRDATLRVWD--IETGQCLHVLMGHVA--AVRCVQYD--GRRVVSG------AYDFM 260
Query: 219 VRKMVDP-----VLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
V K+ DP + GH V ++F D +V+ D +++W+V I T GH
Sbjct: 261 V-KVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309
+ + + L +L G+ + V ++D++ G+
Sbjct: 319 QSLTSGMELK----DNILVSGNADSTVKIWDIKTGQ 350
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
SGSDD T+++W GKC+ T+ V +++ +G D+ ++
Sbjct: 133 VSGSDDNTLKVWSAVT--GKCLRTLVGHTGG-----VWSSQMRDNIIISGSTDRTLKVWN 185
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV 274
+ + + GH TV + L +V+ D L++W++ + + GHV
Sbjct: 186 A-ETGECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+ +++ TD LK+WN I T GH + + L H + GS + V+D
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWD 225
Query: 305 VRWGE 309
+ G+
Sbjct: 226 IETGQ 230
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSL 204
VW V +S + AS SDD T+++W+ G+ + T+ + S+V V F P G +
Sbjct: 142 VWGVAFSPDGQTI-ASASDDKTVKLWNRN---GQLLQTL--TGHSSSVWGVAFSPDGQT- 194
Query: 205 VAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263
+A+ DK ++ + L GH +V + F D T+ +A D +KLWN N
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 251
Query: 264 SRVIRTYKGHVNNRNFVGL 282
++++T GH ++ N V
Sbjct: 252 GQLLQTLTGHSSSVNGVAF 270
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS SDD T+++W+ G+ + T+ + S+V V F P G + +A+ DK ++
Sbjct: 32 ASASDDKTVKLWNRN---GQLLQTL--TGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 85
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
+ L GH +V + F D T+ +A D +KLWN N ++++T GH
Sbjct: 86 RNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH 138
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS SDD T+++W+ G+ + T+ + S+V V F P G + +A+ DK ++
Sbjct: 278 ASASDDKTVKLWNRN---GQLLQTL--TGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 331
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277
+ + GH +V + F D T+ +A D +KLWN N ++++T GH ++
Sbjct: 332 --RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 388
Query: 278 NFVGLS 283
V S
Sbjct: 389 RGVAFS 394
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS SDD T+++W+ G+ + T+ + S+V V F P +A+ DK ++
Sbjct: 401 ASASDDKTVKLWNRN---GQLLQTL--TGHSSSVWGVAFSP-DDQTIASASDDKTVKLWN 454
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277
+ L GH +V + F D T+ +A D +KLWN N ++++T GH ++
Sbjct: 455 RNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 511
Query: 278 NFVGLS 283
V S
Sbjct: 512 RGVAFS 517
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 40/255 (15%)
Query: 50 FDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGT 109
F DS AT +K++I++ K+ Y +++ + +
Sbjct: 665 FSSDDSYIATCSADKKVKIWD-------------SATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 110 SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP--VLGASGSDDGTM 167
+ +L +G D + +DL +K R+ G SV++ + P L AS S DGT+
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKEC---RNTMFGH-TNSVNHCRFSPDDELLASCSADGTL 767
Query: 168 QMWDPRCDGGKCVSTVQ---------PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
++WD R + V+ P V C + G ++ A A K +D
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA--AKNKVLLFD 825
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFLDVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277
+ + GH T+ Y F D L V A + C++LWN++ + +GH++
Sbjct: 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS-- 883
Query: 278 NFVGLSVWRHGGLLG 292
W HG +
Sbjct: 884 -------WVHGVMFS 891
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS D T+Q++ + + G+ + ++ A V C F S +A ADKK +D
Sbjct: 631 ASCGADKTLQVF--KAETGEKLLDIK--AHEDEVLCCAFSS-DDSYIATCSADKKVKIWD 685
Query: 219 --VRKMVDPVLVFDGHRKTVTYIRFLDVDT---LVTAGTDGCLKLWNVNDSRVIRTYKGH 273
K+V +D H + V F + L T D LKLW++N T GH
Sbjct: 686 SATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306
N+ N S LL S + ++DVR
Sbjct: 743 TNSVNHCRFS--PDDELLASCSADGTLRLWDVR 773
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 229 FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
H++TV R L L++ DG +K+WNV R+ R + H
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 231 GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260
GH+K V +I+F D TL+++ D +++WN
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 40/255 (15%)
Query: 50 FDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGT 109
F DS AT +K++I++ K+ Y +++ + +
Sbjct: 672 FSSDDSYIATCSADKKVKIWD-------------SATGKLVHTYDEHSEQVNCCHFTNKS 718
Query: 110 SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP--VLGASGSDDGTM 167
+ +L +G D + +DL +K R+ G SV++ + P L AS S DGT+
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKEC---RNTMFGHTN-SVNHCRFSPDDELLASCSADGTL 774
Query: 168 QMWDPRCDGGKCVSTVQ---------PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
++WD R + V+ P V C + G ++ A A K +D
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA--AKNKVLLFD 832
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFLDVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277
+ + GH T+ Y F D L V A + C++LWN++ + +GH++
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS-- 890
Query: 278 NFVGLSVWRHGGLLG 292
W HG +
Sbjct: 891 -------WVHGVMFS 898
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS D T+Q++ + + G+ + ++ A V C F S +A ADKK +D
Sbjct: 638 ASCGADKTLQVF--KAETGEKLLDIK--AHEDEVLCCAFSS-DDSYIATCSADKKVKIWD 692
Query: 219 --VRKMVDPVLVFDGHRKTVTYIRFLDVDT---LVTAGTDGCLKLWNVNDSRVIRTYKGH 273
K+V +D H + V F + L T D LKLW++N T GH
Sbjct: 693 SATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306
N+ N S LL S + ++DVR
Sbjct: 750 TNSVNHCRFS--PDDELLASCSADGTLRLWDVR 780
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 229 FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
H++TV R L L++ DG +K+WNV R+ R + H
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1091
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 231 GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260
GH+K V +I+F D TL+++ D +++WN
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)
Query: 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179
DG + + + K + D + +V + + +L + G +++WD R G +
Sbjct: 169 DGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSI--GQLKIWDFRQQGNEP 226
Query: 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYI 239
+ + R + CV+ HP +VA G D +DVR+ PV + H + +
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 240 RFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLS 283
F + + L T DG L W+ + ++ H R+ LS
Sbjct: 287 HFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLS 332
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 112 RVLGSGDYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170
V+ +G DG++ +D+ + +P+ H +W V + +P + S+DG++ W
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAE-MWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 171 DPRCD 175
D D
Sbjct: 309 DASTD 313
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH-PFGSSLVAAGCADKKAYAYD 218
+GS D T+++WD + G+ ++T+ C H F + ++ D+ +D
Sbjct: 188 TGSSDSTVRVWD--VNTGEMLNTLIHH------CEAVLHLRFNNGMMVTCSKDRSIAVWD 239
Query: 219 VRKMVDPVL--VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN 276
+ D L V GHR V + F D +V+A D +K+WN + +RT GH
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--K 296
Query: 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
R L L+ GS N + ++D+ G
Sbjct: 297 RGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
L SGS D T+++WD C G C+ ++ V C+ F + + +G D K
Sbjct: 308 LVVSGSSDNTIRLWDIEC--GACLRVLE--GHEELVRCIR---FDNKRIVSGAYDGKIKV 360
Query: 217 YDVRKMVDP--------VLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWN-VND 263
+D+ +DP + H V ++F D +V++ D + +W+ +ND
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLND 415
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171
RV+ +G D V +D+ + H V + ++ G + + S D ++ +WD
Sbjct: 184 RVIITGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWD 239
Query: 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG 231
+ V R+AV V+F + + D+ ++ + V +G
Sbjct: 240 MASPTDITLRRVL-VGHRAAVNVVDF---DDKYIVSASGDRTIKVWNT-STCEFVRTLNG 294
Query: 232 HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
H++ + +++ D +V+ +D ++LW++ +R +GH
Sbjct: 295 HKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVD 245
S + V C+++ + +G D +D + ++ + GH +V +++ D
Sbjct: 130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQY-DER 184
Query: 246 TLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
++T +D +++W+VN ++ T H L + + G++ S+ + V+D+
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCE----AVLHLRFNNGMMVTCSKDRSIAVWDM 240
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNV 261
LVA G D + Y V++ + + + H+ V + + TLV++G D C+K WNV
Sbjct: 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT---VTYIRFLDVDTLVTAG 251
VEF P V +D+K +D + + D + + +LD T G
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 252 TDGCLKLWNVNDSRVIRTY 270
D +++W+V S+ ++ +
Sbjct: 272 ADATIRVWDVTTSKCVQKW 290
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNV 261
LVA G D + Y V++ + + H+ V + + TLV++G D C+K WNV
Sbjct: 555 LVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT---VTYIRFLDVDTLVTAG 251
VEF P V +D+K +D + + D + + +LD T G
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 252 TDGCLKLWNVNDSRVIRTY 270
D +++W+V S+ ++ +
Sbjct: 272 ADATIRVWDVTTSKCVQKW 290
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 40/255 (15%)
Query: 50 FDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGT 109
F D AT + +K++I+N ++ Y +++ + +
Sbjct: 671 FSTDDRFIATCSVDKKVKIWN-------------SMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 110 SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP--VLGASGSDDGTM 167
+L +G D + +DL +K R+ G SV++ + P L AS S DGT+
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKEC---RNTMFGHTN-SVNHCRFSPDDKLLASCSADGTL 773
Query: 168 QMWDP-RCDGGKCVSTVQ-------PSASRSAVC-CVEFHPFGSSLVAAGCADKKAYAYD 218
++WD + K ++ Q P + C + G+ ++ A A K + +D
Sbjct: 774 KLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA--AKNKIFLFD 831
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFLDVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277
+ + GH T+ Y F + L V A + C++LWN + + +GH++
Sbjct: 832 IHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLS-- 889
Query: 278 NFVGLSVWRHGGLLG 292
W HG +
Sbjct: 890 -------WVHGVMFS 897
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS D T+Q++ + + G+ ++ A V C F +A DKK ++
Sbjct: 637 ASCGADKTLQVF--KAETGE--KLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWN 691
Query: 219 VRKMVDPVLVFDGHRKTVTYIRFLDVD---TLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
+ V +D H + V F + L T +D LKLW++N T GH N
Sbjct: 692 -SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN 750
Query: 276 NRNFVGLS 283
+ N S
Sbjct: 751 SVNHCRFS 758
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 223 VDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNV 261
+D + GH++TV R L L++ DG +K+WN+
Sbjct: 1040 LDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNI 1078
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 12/151 (7%)
Query: 207 AGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWNVNDSR 265
A C K + + +L H V F D + T D +K+WN
Sbjct: 637 ASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGE 696
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE 325
++ TY H N + H LL GS + ++D+ E +
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE-----------CRNTM 745
Query: 326 RGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
G +SV R D+ L + +DG L ++
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 98/273 (35%), Gaps = 78/273 (28%)
Query: 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLE----------KKVPIFERDEHGGRR--VWS 147
+++L +P GR + SG DGV++ YDLE K V RD R V +
Sbjct: 46 INTLDIEP-VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 148 VDYSKGDPVLGASGSDDGTMQMWD------------------------------------ 171
V + D + S S D T+++WD
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR 164
Query: 172 -PR---CD--GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP 225
P+ CD G C +Q R + V + P ++A AD + +DVR+
Sbjct: 165 GPKVQLCDLKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222
Query: 226 VLVFD---------------GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT 269
++ D H V + F D L+T GTD ++LWN ++
Sbjct: 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
G V N + GL + CG + VFV
Sbjct: 283 NYGKVCNNSKKGLKF-----TVSCGCSSEFVFV 310
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 232 HRKTVTYIRFLDVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGL 290
H V+ + L T +G+ D C+K+W++ V+ +Y+ H V S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 291 LGCGSETNQVFVYDVRWGEP 310
L C SE N++ ++D R +P
Sbjct: 186 LSC-SEDNRILLWDTRCPKP 204
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 21/219 (9%)
Query: 109 TSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168
+SG SG D + +DL ++V + H + D V S S+D +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF-LSCSEDNRIL 195
Query: 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV 228
+WD RC K S + SA + +HP S + G + D K VL
Sbjct: 196 LWDTRCP--KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT-KSTSCVLS 252
Query: 229 FDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWR 286
H + VT + F V L + D L + + + S + R+ +R+FV + W
Sbjct: 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA----HRDFVRDATW- 307
Query: 287 HGGLLGCGSETNQVFVYDVRWGEPVWVH--DFEPVTAAG 323
S N + V W V H EP+ A G
Sbjct: 308 --------SPLNHSLLTTVGWDHQVVHHVVPTEPLPAPG 338
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 30/230 (13%)
Query: 50 FDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGT 109
FD S + ATG RKI++ ++K K + S+ W+P T
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK---------KAIRSVAWRPHT 70
Query: 110 SGRVLGSGDYDGVVMEYDLEKKVP-IFERD-----EHGGRRVWSVDYSKGDPVLGASGSD 163
S +L +G +D V + E+ FE D E V V +S D A+ S
Sbjct: 71 S--LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSR 127
Query: 164 DGTMQMWDPRCDGG--KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK 221
D ++ +W+ G +C+S +Q + V V +HP + L ++ D D
Sbjct: 128 DKSVWIWETDESGEEYECISVLQEHSQD--VKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 222 MVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271
+ V V +GH TV F T+G +L + +D +R +K
Sbjct: 186 DWECVAVLNGHEGTVWSSDF--------DKTEGVFRLCSGSDDSTVRVWK 227
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ +S++ +G DK
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 130 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 188 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAVCCVEFHPFG 201
V SVD K ++ SGS D T+++W + G+C++T+ S+ V E
Sbjct: 110 VMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWN 260
S + + DK A+++ + F GH + + TL+ +AG DG + LWN
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 261 VNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318
+ + + T V + F W L + +VF D ++ V D P
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYW----LAAATATGIKVFSLDPQY----LVDDLRP 276
Query: 319 VTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
A S+ S+ W G+ TL AG +D ++ V+
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ +S++ +G DK
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 130 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 188 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAVCCVEFHPFG 201
V SVD K ++ SGS D T+++W + G+C++T+ S+ V E
Sbjct: 110 VMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWN 260
S + + DK A+++ + F GH + + TL+ +AG DG + LWN
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 261 VNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318
+ + + T V + F W L + +VF D ++ V D P
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYW----LAAATATGIKVFSLDPQY----LVDDLRP 276
Query: 319 VTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
A S+ S+ W G+ TL AG +D ++ V+
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ +S++ +G DK
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 130 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 188 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAVCCVEFHPFG 201
V SVD K ++ SGS D T+++W + G+C++T+ S+ V E
Sbjct: 110 VMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWN 260
S + + DK A+++ + F GH + + TL+ +AG DG + LWN
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 261 VNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318
+ + + T V + F W L + +VF D ++ V D P
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYW----LAAATATGIKVFSLDPQY----LVDDLRP 276
Query: 319 VTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
A S+ S+ W G+ TL AG +D ++ V+
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ +S++ +G DK
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 130 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 188 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAVCCVEFHPFG 201
V SVD K ++ SGS D T+++W + G+C++T+ S+ V E
Sbjct: 110 VMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWN 260
S + + DK A+++ + F GH + + TL+ +AG DG + LWN
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 261 VNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318
+ + + T V + F W L + +VF D ++ V D P
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYW----LAAATATGIKVFSLDPQY----LVDDLRP 276
Query: 319 VTA--AGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
A + + S+ W G+ TL AG +D ++ V+
Sbjct: 277 EFAGYSAAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVW 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
S S D ++++W+ G+C + V V F P +V+ G D
Sbjct: 81 FAVSASWDHSLRLWN--LQNGQC--QYKFLGHTKDVLSVAFSPDNRQIVSGG-RDNALRV 135
Query: 217 YDVRKMVDPVLVFDGHRKTVTYIRF---LDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
++V+ L H V+ +RF LD +V+ G D +K+W++ R++ KGH
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH 195
Query: 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311
N V +S G L + ++D+ GE +
Sbjct: 196 TNYVTSVTVS--PDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 34/227 (14%)
Query: 48 IEFDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAK---LSSLK 104
+ F P + +GG +R++N+K C + + A +S ++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGE---------------CMHTLSRGAHTDWVSCVR 159
Query: 105 WKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164
+ P V+ SG +D +V +DL + + H V SV S D L AS D
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH-TNYVTSVTVSP-DGSLCASSDKD 217
Query: 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK--- 221
G ++WD G+ +S + A + +C F P + AA +K +D+
Sbjct: 218 GVARLWD--LTKGEALSEMAAGAPINQIC---FSPNRYWMCAA--TEKGIRIFDLENKDI 270
Query: 222 MVDPVLVFDGHRKT----VTYIRFLDVDTLVTAGTDGCLKLWNVNDS 264
+V+ G +K V+ D TL + TD +++W V+++
Sbjct: 271 IVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ +S++ +G DK
Sbjct: 69 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVMSVDIDK-KASMIISGSRDK 123
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 124 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 182 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAVCCVEFHPFG 201
V SVD K ++ SGS D T+++W + G+C++T+ S+ V E
Sbjct: 104 VMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDD 159
Query: 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV-TAGTDGCLKLWN 260
S + + DK A+++ + F GH + + TL+ +AG DG + LWN
Sbjct: 160 SVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 261 VNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318
+ + + T V + F W L + +VF D ++ V D P
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYW----LAAATATGIKVFSLDPQY----LVDDLRP 270
Query: 319 VTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
A S+ S+ W G+ TL AG +D ++ V+
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVW 307
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 13/168 (7%)
Query: 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYD------VRKMVDPVLVFDGHRKTVTYIRFLD 243
+ V + + P +++A+G D ++ V + +PV+ +GH K V + +
Sbjct: 82 APVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP 141
Query: 244 V--DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVF 301
+ L++AG D + +W+V + T V+ + R G L+ +V
Sbjct: 142 TAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 302 VYDVRWGEPVWVHD-----FEPVTAAGSERGFVSSVCWRRVGEDECTL 344
V + R G V D PV A G + + + R+ E + L
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 241 FLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQV 300
F D V+ G D +K+W+++ V+++Y H + N V + L CG E ++
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGRI 206
Query: 301 FVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360
++D R +P DF + +SV W +D T G G + + V K
Sbjct: 207 LLWDTRKPKPATRIDF------CASDTIPTSVTWHPEKDD--TFACGDETGNVSL-VNIK 257
Query: 361 KPLSAQ 366
P SAQ
Sbjct: 258 NPDSAQ 263
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 106/284 (37%), Gaps = 49/284 (17%)
Query: 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK---VPIFERDEHGGRRV 145
+C + T A ++ + W + +L + D V + LEK+ V F + EH
Sbjct: 86 LCTAGVQTEAGVTDVAWV--SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK 143
Query: 146 WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205
+S G + SG D ++++WD + +A S V CV P ++
Sbjct: 144 TLSVFSDGTQAV--SGGKDFSVKVWDL----SQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 206 AAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT------------- 252
+ D + +D RK K T I F DT+ T+ T
Sbjct: 198 LSCGEDGRILLWDTRK-----------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246
Query: 253 -DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWGEP 310
G + L N+ + +T V+++N GL+ H L SE V V D
Sbjct: 247 ETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDA----- 299
Query: 311 VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354
DF V S R FV+ V W + + T V G +LH
Sbjct: 300 ----DFSEVFRDLSHRDFVTGVAWSPLDHSKFTTV-GWDHKVLH 338
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 112 RVLGSGDYDGVVMEYDLEK--KVPIFERDEHGGRRVWSVD------YSKGDPVLGASGSD 163
VL SG +G + +D+ K + P G+ + SVD +++ + AS
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 164 DGTMQMWDPRCDGGKC-VSTVQP-SASRSAVCCVEFHPFGSSLVAAGCA---DKKAYAYD 218
+WD + +S P S + + VE+HP S+ VA D +D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246
Query: 219 VRKMVDPVLVFD-GHRKTVTYIRF--LDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
+R P+ + GH+K + + + D L+++G D + LWN + + + N
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 56 VFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115
VFA+ G + I+++K+ S + +LS ++W P S RV
Sbjct: 180 VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ-------QLSVVEWHPKNSTRVAT 232
Query: 116 S--GDYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
+ D D ++ +DL P+ ++ + + S+D+ D L S D T+ +W+P
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 173 RCDGGKCVSTVQPSASRSAVCC-VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV 226
+ + +R C +F P L A D K ++ + + +
Sbjct: 293 -----ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197
DE+ W+ D + P+L +GS G +++ +P +C+ +A+ ++F
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPI--TMQCIK--HYVGHGNAINELKF 159
Query: 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRKTVTYIRF-LDVDTLVTAGTD 253
HP +L+ + D ++++ V +F +GHR V + L + +++ G D
Sbjct: 160 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 218
Query: 254 GCLKLWNVNDSRVIRT------YKGHVNNRNFVGLSV 284
LKLW +N R++ Y + NR F+ +
Sbjct: 219 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 255
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 186 SASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDV 244
S RS V V FHP S +V+A A K + Y+ D GH +V I F
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHS 161
Query: 245 DTLVTA-GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVY 303
L+ + D +KLW+ IRT GH + N +S+ +G + S + ++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGH--DHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 304 DVRWG 308
+V+ G
Sbjct: 220 EVQTG 224
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219
S S+D T+++WD + G T++ +V + F G L+A+ AD +D
Sbjct: 125 SASEDATIKVWD--YETGDFERTLK--GHTDSVQDISFDHSGK-LLASCSADMTIKLWDF 179
Query: 220 RKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
+ + + GH V+ + + + D +V+A D +K+W V ++T+ GH
Sbjct: 180 QGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219
SGS D T++MWD G C+ T+ + V V FH G +++ CAD K
Sbjct: 313 SGSRDKTIKMWD--VSTGMCLMTL--VGHDNWVRGVLFHSGGKFILS--CADDKTLRVWD 366
Query: 220 RKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT-DGCLKLWN 260
K + + H VT + F V G+ D +K+W
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197
DE+ W+ D + P+L +GS G +++ +P +C+ +A+ ++F
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPI--TMQCIK--HYVGHGNAINELKF 122
Query: 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRKTVTYIRF-LDVDTLVTAGTD 253
HP +L+ + D ++++ V +F +GHR V + L + +++ G D
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 254 GCLKLWNVNDSRVIRT------YKGHVNNRNFVGLSV 284
LKLW +N R++ Y + NR F+ +
Sbjct: 182 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 218
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197
DE+ W+ D + P+L +GS G +++ +P +C+ +A+ ++F
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPI--TMQCIK--HYVGHGNAINELKF 118
Query: 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRKTVTYIRF-LDVDTLVTAGTD 253
HP +L+ + D ++++ V +F +GHR V + L + +++ G D
Sbjct: 119 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 177
Query: 254 GCLKLWNVNDSRVIRT------YKGHVNNRNFVGLSV 284
LKLW +N R++ Y + NR F+ +
Sbjct: 178 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 214
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197
DE+ W+ D + P+L +GS G +++ +P +C+ +A+ ++F
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPI--TMQCIK--HYVGHGNAINELKF 122
Query: 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRKTVTYIRF-LDVDTLVTAGTD 253
HP +L+ + D ++++ V +F +GHR V + L + +++ G D
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 254 GCLKLWNVNDSRVIRT------YKGHVNNRNFVGLSV 284
LKLW +N R++ Y + NR F+ +
Sbjct: 182 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 218
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197
DE+ W+ D + P+L +GS G +++ +P +C+ +A+ ++F
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPI--TMQCIK--HYVGHGNAINELKF 123
Query: 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRKTVTYIRF-LDVDTLVTAGTD 253
HP +L+ + D ++++ V +F +GHR V + L + +++ G D
Sbjct: 124 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182
Query: 254 GCLKLWNVNDSRVIRT------YKGHVNNRNFVGLSV 284
LKLW +N R++ Y + NR F+ +
Sbjct: 183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212
D S S D T+++WD G+ + +S V V+ S +++ G DK
Sbjct: 75 ADGAYALSASWDKTLRLWDVAT--GETYQ--RFVGHKSDVXSVDIDKKASXIIS-GSRDK 129
Query: 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-------DVDTLVTAGTDGCLKLWNVNDSR 265
+ ++ L+ GH V+ +R + D T+++AG D +K WN+N +
Sbjct: 130 TIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ + GH N N L+ G L+ + ++ ++++
Sbjct: 188 IEADFIGH--NSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 199 PFGSSLVAAGCADKKAYAYD------VRKMVDPVLVFDGHRKTVTYIRFLDV--DTLVTA 250
P +++A+G D ++ V + +PV+ +GH K V + + + L++A
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310
G D + +W+V + T V+ + R G L+ +V V + R G
Sbjct: 151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210
Query: 311 VWVHD-----FEPVTAAGSERGFVSSVCWRRVGEDECTL 344
V D PV A G + + + R+ E + L
Sbjct: 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 119/311 (38%), Gaps = 82/311 (26%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHG----------GRRVWSVDYS-KGDPVLGASG 161
VL SG D VM + L +E +++G G + D + + S
Sbjct: 41 VLISGSRDKTVMIWKL------YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94
Query: 162 SDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK 221
S D T+++WD R + + +S V V F P +++AG A+++ +++
Sbjct: 95 SWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILG 149
Query: 222 MVD-PVLVFDGHRKTVTYIRFLDV-----------DTLVTAGTDGCLKLWNVNDSRVIRT 269
+ H V+ +R+ + + G DG LK+WN N ++ T
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYT 208
Query: 270 YKGHVNNRNFVGLS----------------VWRHGGL------LGCGSETNQV-FVYDVR 306
+K H +N N + +S +W L GS NQ+ F ++
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268
Query: 307 W------------------GEPVWVHDFEPVTAAGSERG---FVSSVCWRRVGEDECTLV 345
W PV + EP+T A ++G +S+ W +G+ L
Sbjct: 269 WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK---LF 325
Query: 346 AGGSDGLLHVF 356
AG +DG++ F
Sbjct: 326 AGFTDGVIRTF 336
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV 192
P++ H G V S+ + G + SGS D T ++W G V +Q A ++V
Sbjct: 96 PLYTLIGHQGN-VCSLSFQDGVVI---SGSWDKTAKVWKE----GSLVYNLQ--AHNASV 145
Query: 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFLDVDTLVTAG 251
+ F + ADK + K++ F G H V ++ +D ++
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKT---FSGIHNDVVRHLAVVDDGHFISCS 202
Query: 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFV-GLSVWRHGGLLGCGSE 296
DG +KL + + V+RTY+GH +FV + + +G ++ CG +
Sbjct: 203 NDGLIKLVDXHTGDVLRTYEGH---ESFVYCIKLLPNGDIVSCGED 245
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 11/165 (6%)
Query: 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE--KKVPIFERDEHGGRRVWSVDYSKGDP 155
A + L P +G SG D M +D+ + V FE E V Y GD
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY--YPSGDA 254
Query: 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAY 215
ASGSDD T +++D R D + V+ + V+F G L+ AG D
Sbjct: 255 F--ASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTIN 309
Query: 216 AYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT-DGCLKLW 259
+DV K ++F GH V+ +R T +G+ D L++W
Sbjct: 310 VWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 142 GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201
G +V +D+ K D S S DG + +WD + T+ + V + P G
Sbjct: 64 GNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSG 118
Query: 202 SSLVAAGCADKKAYAYDV-----RKMVDPVLVFDGHRKTVTYIRFLDVDT-LVTAGTDGC 255
+ +A G D K Y + M H ++ F + D ++TA DG
Sbjct: 119 CA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 256 LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311
LW+V ++++++ GH + + L+ G G + V+D+R G+ V
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304
+T V+ G D +W++ + ++ ++ H ++ N V + G GS+ +YD
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV--RYYPSGDAFASGSDDATCRLYD 268
Query: 305 VRWGEPVWVHDFEPVTAAGSERGF 328
+R V ++ E + S F
Sbjct: 269 LRADREVAIYSKESIIFGASSVDF 292
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 21/264 (7%)
Query: 56 VFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDY-------YICTPAKLSSLK-WKP 107
+ +G R +R+++IK + D YI T ++ ++L WK
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 108 GTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167
V G+ + + ++ P F G + SV G + SGS D T+
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNIVVSGSYDNTL 292
Query: 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL 227
+WD KC+ + R + H + A+ D +D+ + +
Sbjct: 293 IVWD--VAQMKCLYILSGHTDR-IYSTIYDHERKRCISAS--MDTTIRIWDLENG-ELMY 346
Query: 228 VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRH 287
GH V +R D LV+A DG ++ W+ ND R + H N + + + +
Sbjct: 347 TLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAIT-TFYVS 402
Query: 288 GGLLGCGSETNQVFVYDVRWGEPV 311
+L GSE NQ +Y++R G+ V
Sbjct: 403 DNILVSGSE-NQFNIYNLRSGKLV 425
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYD-VRKMVDPVLVFDGHRKTVTYIRFLDVDTLV 248
S + C++F + V G DK YD + K +L GH V +++ LV
Sbjct: 123 SVITCLQFE---DNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGGILV 177
Query: 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ TD +++W++ ++GH + + + +++ + GS N + V+ +
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219
+G+DD ++++D +Q S V +++ G ++ +G D+ +D+
Sbjct: 137 TGADDKMIRVYDSINKK----FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190
Query: 220 RKMVDPVLVFDGHRKTVT---YIRFLDVDTLVTAGTDGCLKLWNVNDSRVI--------- 267
+K VF+GH TV + + ++ +VT D L +W + +
Sbjct: 191 KKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 268 -RTYKGHVNNRNFVGL---------SVWRHGGLLGCGSETNQVFVYDV 305
+ N FVG+ +V HG ++ GS N + V+DV
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175
+G D ++ YD K + + H G VW++ Y+ G ++ SGS D T+++WD +
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGG-VWALKYAHGGILV--SGSTDRTVRVWDIK-- 191
Query: 176 GGKCVSTVQPSASRSAVCCVEFHPFGS-SLVAAGCADKKAYAYDVRK 221
G C + S V C++ + + + G D + + + K
Sbjct: 192 KGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDGH-RKTVTYIRFLDVDTLVT 249
V CV + P L A G D +++ K D P+++ H +V + +L+ T+V+
Sbjct: 539 VACVSWSPDNVRL-ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 597
Query: 250 AGTDGCLKLWNV 261
AG D +K WNV
Sbjct: 598 AGQDSNIKFWNV 609
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 161 GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR 220
G+ +G +++ D + + + A S + ++F P G +L+++ D + + V+
Sbjct: 115 GTTEGDIKVLDSNFNLQREID----QAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVK 169
Query: 221 KMVDPVLVFDGHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYK 271
+P + GHR TVT I +D +++A DG ++LW I T+
Sbjct: 170 DGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 217 YDVRKMVDPVLVFDGHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
+++++ +D H +T ++F + L+++ D LK+W+V D RT GH
Sbjct: 128 FNLQREID-----QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK 213
D SGS DG +++WD VST + V V F +V+A D+
Sbjct: 441 DGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSA-SRDRT 495
Query: 214 AYAYDVRKMVDPVLVF--DGHRKTVTYIRFLD---VDTLVTAGTDGCLKLWNVNDSRVIR 268
++ + +GHR V+ +RF T+V+A D +K+WN+++ ++
Sbjct: 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 269 TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA 322
T GH + V +S G L G + V ++D+ G+ ++ + V A
Sbjct: 556 TLAGHTGYVSTVAVS--PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 161 GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR 220
G+ +G +++ D + + + A S + ++F P G +L+++ D + + V+
Sbjct: 112 GTTEGDIKVLDSNFNLQREID----QAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVK 166
Query: 221 KMVDPVLVFDGHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYK 271
+P + GHR TVT I +D +++A DG ++LW I T+
Sbjct: 167 DGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 231 GHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273
H +T ++F + L+++ D LK+W+V D RT GH
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311
+DG + +W++++ ++R ++GH + + + +S G L G N V +D+R G +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 312 WVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341
HDF T+ G+ + W VG +
Sbjct: 219 QQHDF---TSQIFSLGYCPTGEWLAVGMES 245
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 21/264 (7%)
Query: 56 VFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDY-------YICTPAKLSSLK-WKP 107
+ +G R +R+++IK + D YI T ++ ++L WK
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 108 GTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167
V G+ + + ++ P F G SV G + SGS D T+
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA--SVRTVSGHGNIVVSGSYDNTL 292
Query: 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL 227
+WD KC+ + R + H + A+ D +D+ +
Sbjct: 293 IVWD--VAQXKCLYILSGHTDR-IYSTIYDHERKRCISAS--XDTTIRIWDLENG-ELXY 346
Query: 228 VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRH 287
GH V +R D LV+A DG ++ W+ ND R + H N + + + +
Sbjct: 347 TLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAIT-TFYVS 402
Query: 288 GGLLGCGSETNQVFVYDVRWGEPV 311
+L GSE NQ +Y++R G+ V
Sbjct: 403 DNILVSGSE-NQFNIYNLRSGKLV 425
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYD-VRKMVDPVLVFDGHRKTVTYIRFLDVDTLV 248
S + C++F + V G DK YD + K +L GH V +++ LV
Sbjct: 123 SVITCLQFE---DNYVITGADDKXIRVYDSINKKF--LLQLSGHDGGVWALKYAHGGILV 177
Query: 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305
+ TD +++W++ ++GH + + + +++ + GS N + V+ +
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219
+G+DD ++++D +Q S V +++ G ++ +G D+ +D+
Sbjct: 137 TGADDKXIRVYDSINKK----FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190
Query: 220 RKMVDPVLVFDGHRKTVT---YIRFLDVDTLVTAGTDGCLKLWNVNDSRVI--------- 267
+K VF+GH TV + + ++ +VT D L +W + +
Sbjct: 191 KKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 268 -RTYKGHVNNRNFVGL---------SVWRHGGLLGCGSETNQVFVYDV 305
+ N FVG+ +V HG ++ GS N + V+DV
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175
+G D + YD K + + H G VW++ Y+ G ++ SGS D T+++WD +
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGG-VWALKYAHGGILV--SGSTDRTVRVWDIK-- 191
Query: 176 GGKCVSTVQPSASRSAVCCVEFHPFGS-SLVAAGCADKKAYAYDVRK 221
G C + S V C++ + + + G D + + + K
Sbjct: 192 KGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 190 SAVCCVEFHPFGSSLVAAGCADKKAYAY-------------DVRKMVDPV-LVFDGHRKT 235
S VCCV+F G L A GC +K Y D DP L +
Sbjct: 65 SVVCCVKFSNDGEYL-ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 236 VTYIRFL----DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291
YIR + D L T D +++W++ + +++ +GH ++ L + G L
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH--EQDIYSLDYFPSGDKL 180
Query: 292 GCGSETNQVFVYDVRWGE 309
GS V ++D+R G+
Sbjct: 181 VSGSGDRTVRIWDLRTGQ 198
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 34/210 (16%)
Query: 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLK 104
I +++ PS +G R +RI+++++ C + ++++
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--------------CSLTLSIEDGVTTVA 213
Query: 105 WKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG----GRR--VWSVDYSK-GDPVL 157
PG G+ + +G D V +D E + D G + V+SV +++ G V+
Sbjct: 214 VSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 158 GASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSL--------VAAGC 209
SGS D ++++W+ + K S P++ V + F S+ + +G
Sbjct: 273 --SGSLDRSVKLWNLQNANNKSDSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Query: 210 ADKKAYAYDVRKMVDPVLVFDGHRKTVTYI 239
D+ +D +K +P+L+ GHR +V +
Sbjct: 330 KDRGVLFWD-KKSGNPLLMLQGHRNSVISV 358
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 100/284 (35%), Gaps = 87/284 (30%)
Query: 50 FDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAKLSSLKWKPGT 109
F P ATG R IRI++I++ K+ + SL + P
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENR-------------KIVMILQGHEQDIYSLDYFPSG 177
Query: 110 SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169
V GSGD T+++
Sbjct: 178 DKLVSGSGDR----------------------------------------------TVRI 191
Query: 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD------VRKMV 223
WD R G+C T+ + V V P +AAG D+ +D V ++
Sbjct: 192 WDLRT--GQCSLTL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 224 DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV------NDSRVIR------TY 270
GH+ +V + F D ++V+ D +KLWN+ +DS+ TY
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 271 KGHVNNRNFV-GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV 313
GH ++FV ++ ++ + GS+ V +D + G P+ +
Sbjct: 307 IGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 15/193 (7%)
Query: 160 SGSDDGTMQMWDPRCDGGKCVSTVQ---PSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216
+GS D T +WD G+ +S PS + V + + +++ +G D
Sbjct: 175 TGSGDQTCVLWD--VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 217 YDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
+D+R V + GH + ++F D T DG +L+++ ++ Y +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
Query: 276 NRN-----FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330
+ ++ G LL G +V+D E V T S G +S
Sbjct: 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV----LNLGTLQNSHEGRIS 348
Query: 331 SVCWRRVGEDECT 343
+ G CT
Sbjct: 349 CLGLSSDGSALCT 361
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA-VCCVEFHPFGSSLVAAGCADK 212
D L S S DG + +WD + V RS+ V + P G+ VA G D
Sbjct: 66 DSRLLVSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDN 119
Query: 213 KAYAYDVRKMVDPVLV---FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRT 269
Y+++ V V GH ++ RFLD + +VT+ D LW++ + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
+ GH + + LS+ L G+ ++DVR G
Sbjct: 180 FTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
D V+ D KLW+V + +T+ GH ++ N + + +G GS+ +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRL 252
Query: 303 YDVRWGEPVWVHDFEPVTAAGSERGFVSS 331
+D+R + + + + + + F S
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKS 281
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA-VCCVEFHPFGSSLVAAGCADK 212
D L S S DG + +WD + V RS+ V + P G+ VA G D
Sbjct: 66 DSRLLVSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDN 119
Query: 213 KAYAYDVRKMVDPVLV---FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRT 269
Y+++ V V GH ++ RFLD + +VT+ D LW++ + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
+ GH + + LS+ L G+ ++DVR G
Sbjct: 180 FTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
D V+ D KLW+V + +T+ GH ++ N + + +G GS+ +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRL 252
Query: 303 YDVRWGEPVWVHDFEPVTAAGSERGFVSS 331
+D+R + + + + + + F S
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKS 281
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA-VCCVEFHPFGSSLVAAGCADK 212
D L S S DG + +WD + V RS+ V + P G+ VA G D
Sbjct: 77 DSRLLVSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDN 130
Query: 213 KAYAYDVRKMVDPVLV---FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRT 269
Y+++ V V GH ++ RFLD + +VT+ D LW++ + T
Sbjct: 131 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 190
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
+ GH + + LS+ L G+ ++DVR G
Sbjct: 191 FTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
D V+ D KLW+V + +T+ GH ++ N + + +G GS+ +
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRL 263
Query: 303 YDVRWGEPVWVHDFEPVTAAGSERGFVSS 331
+D+R + + + + + + F S
Sbjct: 264 FDLRADQELMTYSHDNIICGITSVSFSKS 292
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA-VCCVEFHPFGSSLVAAGCADK 212
D L S S DG + +WD + V RS+ V + P G+ VA G D
Sbjct: 66 DSRLLLSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDN 119
Query: 213 KAYAYDVRKMVDPVLV---FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRT 269
Y+++ V V GH ++ RFLD + +VT+ D LW++ + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
+ GH + + LS+ L G+ ++DVR G
Sbjct: 180 FTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
D V+ D KLW+V + +T+ GH ++ N + + +G GS+ +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRL 252
Query: 303 YDVRWGEPVWVHDFEPVTAAGSERGFVSS 331
+D+R + + + + + + F S
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKS 281
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA-VCCVEFHPFGSSLVAAGCADK 212
D L S S DG + +WD + V RS+ V + P G+ VA G D
Sbjct: 66 DSRLLLSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDN 119
Query: 213 KAYAYDVRKMVDPVLV---FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRT 269
Y+++ V V GH ++ RFLD + +VT+ D LW++ + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308
+ GH + + LS+ L G+ ++DVR G
Sbjct: 180 FTGHTG--DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302
D V+ D KLW+V + +T+ GH ++ N + + +G GS+ +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRL 252
Query: 303 YDVRWGEPVWVHDFEPVTAAGSERGFVSS 331
+D+R + + + + + + F S
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKS 281
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 189 RSAVCCVEFHPFGSSLVAAGCADKKAY 215
RS + +++HP + L+AAGCAD+KAY
Sbjct: 146 RSTILSLDWHP-NNVLLAAGCADRKAY 171
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 226 VLVFDGHRKTVTYIRFLDVDTLVTAGTDGC-LKLWNVNDSRVIRTYKGHVNNRNFVGLSV 284
+L + + ++ + ++ + GT ++LW+V + +R H VG
Sbjct: 151 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR---VGSLS 207
Query: 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL 344
W + +L GS + + +DVR E H ++ G VC R D L
Sbjct: 208 W-NSYILSSGSRSGHIHHHDVRVAE----HHVATLS------GHSQEVCGLRWAPDGRHL 256
Query: 345 VAGGSDGLLHVF 356
+GG+D L++V+
Sbjct: 257 ASGGNDNLVNVW 268
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDY 150
DYY L+ + W +SG VL + V + + + E G + SV +
Sbjct: 116 DYY------LNLVDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 166
Query: 151 SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210
K L A G+ +Q+WD K + + ++R V + S ++++G
Sbjct: 167 IKEGNYL-AVGTSSAEVQLWD--VQQQKRLRNMTSHSAR-----VGSLSWNSYILSSGSR 218
Query: 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259
+ +DVR V GH + V +R+ D L + G D + +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 236 VTYIRFLDVDTLVTAGTDGC-LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294
++ + ++ + GT ++LW+V + +R H VG W + +L G
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR---VGSLSW-NSYILSSG 205
Query: 295 SETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354
S + + +DVR E H ++ G VC R D L +GG+D L++
Sbjct: 206 SRSGHIHHHDVRVAE----HHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVN 255
Query: 355 VF 356
V+
Sbjct: 256 VW 257
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDY 150
DYY L+ + W +SG VL + V + + + E G + SV +
Sbjct: 105 DYY------LNLVDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 155
Query: 151 SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210
K L A G+ +Q+WD K + + ++R V + S ++++G
Sbjct: 156 IKEGNYL-AVGTSSAEVQLWD--VQQQKRLRNMTSHSAR-----VGSLSWNSYILSSGSR 207
Query: 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259
+ +DVR V GH + V +R+ D L + G D + +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172
+ S D + +DLE I D G W++ +S L A+G+ G + ++
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYL-ATGTHVGKVNIF-- 149
Query: 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR--KMVDPVLVFD 230
+ GK ++ + + + P G L A+G D +D+ K++ +
Sbjct: 150 GVESGKKEYSLDTRGK--FILSIAYSPDGKYL-ASGAIDGIINIFDIATGKLLH---TLE 203
Query: 231 GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275
GH + + F D LVTA DG +K+++V + + T GH +
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 48 IEFDPSDSVFATGGIARKIRIYNIKSXXXXXXXXXXXXXSKVCDYYICTPAK-LSSLKWK 106
+ F P ATG K+ I+ ++S +Y + T K + S+ +
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKK--------------EYSLDTRGKFILSIAYS 173
Query: 107 PGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166
P G+ L SG DG++ +D+ + + H + S+ +S D L + SDDG
Sbjct: 174 P--DGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSP-DSQLLVTASDDGY 229
Query: 167 MQMWD 171
++++D
Sbjct: 230 IKIYD 234
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVL 157
A++ L W + VL SG G + +D+ + V + + + D +
Sbjct: 177 ARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW-RSDGLQ 231
Query: 158 GASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA--GCADKKAY 215
ASG +D +Q+WD R K T +A ++ C P+ S+L+A G DK+ +
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC----PWQSNLLATGGGTMDKQIH 287
Query: 216 AYD 218
++
Sbjct: 288 FWN 290
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 253 DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVW-RHGGLLGCGSETNQVFVYDVRWGEPV 311
+G + +++V +RT GH + VG W RH +L GS + + +DVR
Sbjct: 155 NGLVDIYDVESQTKLRTMAGH---QARVGCLSWNRH--VLSSGSRSGAIHHHDVRIAN-- 207
Query: 312 WVHDFEPVTAAGSERGFVSSVC---WRRVGEDECTLVAGGSDGLLHVF 356
H G+ +G S VC WR D L +GG+D ++ ++
Sbjct: 208 --HQI------GTLQGHSSEVCGLAWR---SDGLQLASGGNDNVVQIW 244
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 205 VAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263
+ AG D K YDV + V D H K+++ ++F D+ +T+ D L +V+
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Query: 264 SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG--EPVWVHD-FEPVT 320
+V++ Y+ N ++ + +LG G E V G E + H FE
Sbjct: 250 LQVLKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-- 306
Query: 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSDGL--LHVF 356
G +G + + + +GG DG LH F
Sbjct: 307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYD 218
AS S D T +W D +CV+T++ + V V + P G +L+A DK + ++
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSG-NLLATCSRDKSVWVWE 133
Query: 219 V--RKMVDPVLVFDGHRKTVTYIRF-LDVDTLVTAGTDGCLKLW--NVNDSRVIRTYKGH 273
V + V V + H + V ++ + + L +A D +KL+ +D T +GH
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 200 FGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGC-LK 257
+ S V A D Y + + +L + + ++ + ++ + GT ++
Sbjct: 33 WSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 258 LWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317
LW+V + +R H VG W + +L GS + + +DVR E H
Sbjct: 93 LWDVQQQKRLRNMTSHSAR---VGSLSW-NSYILSSGSRSGHIHHHDVRVAE----HHVA 144
Query: 318 PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356
++ G VC R D L +GG+D L++V+
Sbjct: 145 TLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDY 150
DYY L+ + W +SG VL + V + + + E G + SV +
Sbjct: 25 DYY------LNLVDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 75
Query: 151 SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210
K L A G+ +Q+WD + K + + ++R V + S ++++G
Sbjct: 76 IKEGNYL-AVGTSSAEVQLWDVQQQ--KRLRNMTSHSAR-----VGSLSWNSYILSSGSR 127
Query: 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259
+ +DVR V GH + V +R+ D L + G D + +W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR-CDGGKCVSTV 183
+ E D+H G VWSV ++ +L ++G DDG +++W + KC+S +
Sbjct: 297 LSEHDDHNGE-VWSVSWNLTGTILSSAG-DDGKVRLWKATYSNEFKCMSVI 345
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR-CDGGKCVSTV 183
+ E D+H G VWSV ++ +L ++G DDG +++W + KC+S +
Sbjct: 299 LSEHDDHNGE-VWSVSWNLTGTILSSAG-DDGKVRLWKATYSNEFKCMSVI 347
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 112 RVLGSGDYDGVVMEYDLEK-KVPIFERDEH-----GGRRVWSVDYSKGDPVLGASGSDDG 165
R L +GD+ G + ++LE ++P++ H + + +G P + +GS DG
Sbjct: 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI-VTGSRDG 139
Query: 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS------LVAAGCADKKAYAYDV 219
T+++WDPR V+ ++P + C FG++ +V AG + +D+
Sbjct: 140 TVKVWDPR-QKDDPVANMEPVQGENKRDCWTV-AFGNAYNQEERVVCAGYDNGDIKLFDL 197
Query: 220 RKM 222
R M
Sbjct: 198 RNM 200
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 211 DKKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFLDVDTLV 248
+ KA A ++RK++ P V+DG +KT I++ D+ L+
Sbjct: 551 EAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILL 589
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR-CDGGKCVSTV 183
+ E D+H G VWSV ++ +L ++G DDG +++W + KC S +
Sbjct: 299 LSEHDDHNGE-VWSVSWNLTGTILSSAG-DDGKVRLWKATYSNEFKCXSVI 347
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 231 GHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVG--LSVWRH 287
H V + F D +TL +AG DG L+ W+V I T H ++ L+V H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 358
Query: 288 GGLLGCGSETNQVFVYDVRWGEPVW 312
G L + V+DV++ + W
Sbjct: 359 GDSLA------EPGVFDVKFLKKGW 377
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 231 GHRKTVTYIRFLDV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVG--LSVWRH 287
H V + F D +TL +AG DG L+ W+V I T H ++ L+V H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 288 GGLLGCGSETNQVFVYDVRWGEPVW 312
G L + V+DV++ + W
Sbjct: 349 GDSLA------EPGVFDVKFLKKGW 367
>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
Length = 258
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 305 VRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336
V WGE +V FEPV + G+ RG S W R
Sbjct: 196 VFWGERRYVSHFEPVGSGGAYRG--PSTAWFR 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,539,108
Number of Sequences: 62578
Number of extensions: 489231
Number of successful extensions: 1352
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 282
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)