Query 017773
Match_columns 366
No_of_seqs 750 out of 1686
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 03:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.9E-54 1.1E-58 338.6 28.3 307 15-357 134-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3.4E-53 7.3E-58 333.9 26.7 315 13-364 83-444 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4E-52 8.8E-57 331.5 22.4 283 41-357 174-458 (459)
4 KOG0279 G protein beta subunit 100.0 2.1E-45 4.5E-50 278.5 32.3 300 38-360 11-314 (315)
5 KOG0286 G-protein beta subunit 100.0 9.9E-45 2.1E-49 276.5 32.1 284 38-357 51-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 7.5E-46 1.6E-50 295.8 20.8 268 12-304 172-458 (459)
7 KOG0265 U5 snRNP-specific prot 100.0 1.4E-43 3E-48 271.2 28.1 287 38-357 43-336 (338)
8 KOG0284 Polyadenylation factor 100.0 2.5E-45 5.5E-50 291.6 18.4 285 41-359 95-380 (464)
9 KOG0273 Beta-transducin family 100.0 1E-42 2.2E-47 281.6 31.6 308 13-359 176-523 (524)
10 KOG0315 G-protein beta subunit 100.0 1.9E-42 4E-47 258.4 27.2 272 55-362 11-291 (311)
11 KOG0286 G-protein beta subunit 100.0 7.2E-42 1.6E-46 260.9 29.2 277 9-304 49-343 (343)
12 KOG0295 WD40 repeat-containing 100.0 3.6E-42 7.9E-47 269.9 25.3 285 38-358 104-405 (406)
13 KOG0293 WD40 repeat-containing 100.0 3.9E-42 8.4E-47 274.0 25.4 291 40-360 222-514 (519)
14 PLN00181 protein SPA1-RELATED; 100.0 2.7E-40 5.8E-45 310.7 41.4 303 38-358 479-792 (793)
15 KOG0273 Beta-transducin family 100.0 7.5E-42 1.6E-46 276.6 26.4 300 39-363 175-486 (524)
16 KOG0263 Transcription initiati 100.0 1E-42 2.2E-47 298.4 22.4 272 42-360 378-650 (707)
17 KOG0285 Pleiotropic regulator 100.0 2.8E-41 6.1E-46 264.5 25.7 290 40-359 149-439 (460)
18 KOG0279 G protein beta subunit 100.0 1.8E-40 4E-45 251.7 27.7 275 9-306 29-313 (315)
19 KOG0315 G-protein beta subunit 100.0 8.5E-40 1.8E-44 244.2 30.0 292 9-335 11-309 (311)
20 KOG0291 WD40-repeat-containing 100.0 1.5E-39 3.3E-44 277.3 35.6 330 10-360 140-509 (893)
21 KOG0316 Conserved WD40 repeat- 100.0 2.7E-40 5.8E-45 245.0 25.6 282 41-359 16-299 (307)
22 cd00200 WD40 WD40 domain, foun 100.0 3.8E-39 8.3E-44 269.7 36.0 282 40-357 7-289 (289)
23 KOG0282 mRNA splicing factor [ 100.0 9.3E-42 2E-46 276.9 18.1 286 40-357 212-503 (503)
24 KOG0319 WD40-repeat-containing 100.0 3.9E-40 8.4E-45 280.3 28.0 210 138-362 362-580 (775)
25 KOG0266 WD40 repeat-containing 100.0 1.8E-39 3.9E-44 284.7 32.0 288 41-359 158-454 (456)
26 KOG0645 WD40 repeat protein [G 100.0 5.6E-39 1.2E-43 242.7 30.0 292 39-359 11-311 (312)
27 KOG0318 WD40 repeat stress pro 100.0 8.8E-39 1.9E-43 262.2 33.5 291 41-359 189-602 (603)
28 KOG0291 WD40-repeat-containing 100.0 5.8E-39 1.3E-43 273.8 33.4 320 16-363 266-616 (893)
29 KOG0281 Beta-TrCP (transducin 100.0 3.5E-41 7.6E-46 263.3 17.5 285 41-363 196-481 (499)
30 KOG0319 WD40-repeat-containing 100.0 1.5E-39 3.2E-44 276.8 26.3 310 12-358 297-618 (775)
31 KOG0276 Vesicle coat complex C 100.0 4.6E-39 1E-43 269.1 26.5 281 41-355 12-295 (794)
32 KOG0284 Polyadenylation factor 100.0 2.8E-40 6E-45 263.0 17.6 265 16-305 97-379 (464)
33 KOG0296 Angio-associated migra 100.0 6.6E-38 1.4E-42 246.2 29.0 303 16-359 84-398 (399)
34 KOG0277 Peroxisomal targeting 100.0 7.1E-38 1.5E-42 234.6 22.4 285 46-358 12-308 (311)
35 KOG0295 WD40 repeat-containing 100.0 1.6E-38 3.5E-43 249.5 19.7 251 92-362 103-367 (406)
36 KOG0285 Pleiotropic regulator 100.0 7.1E-38 1.5E-42 245.5 21.6 249 89-362 143-392 (460)
37 KOG0263 Transcription initiati 100.0 9.5E-38 2.1E-42 268.0 22.8 204 92-307 446-650 (707)
38 KOG0643 Translation initiation 100.0 3.1E-36 6.7E-41 227.5 26.8 297 38-360 6-318 (327)
39 KOG0318 WD40 repeat stress pro 100.0 2E-35 4.4E-40 242.6 33.6 289 40-361 57-352 (603)
40 KOG0306 WD40-repeat-containing 100.0 1.4E-36 3E-41 259.2 26.6 289 39-362 370-667 (888)
41 KOG0296 Angio-associated migra 100.0 5E-36 1.1E-40 235.6 27.1 290 39-364 61-361 (399)
42 KOG0640 mRNA cleavage stimulat 100.0 5.7E-37 1.2E-41 236.3 21.2 300 41-359 111-426 (430)
43 KOG0276 Vesicle coat complex C 100.0 4.2E-37 9E-42 257.4 22.1 250 94-363 10-261 (794)
44 KOG0293 WD40 repeat-containing 100.0 4.7E-37 1E-41 245.1 20.5 274 9-306 218-513 (519)
45 KOG0265 U5 snRNP-specific prot 100.0 3.6E-36 7.7E-41 230.7 22.6 252 89-361 39-298 (338)
46 KOG1407 WD40 repeat protein [F 100.0 3.5E-35 7.6E-40 221.0 27.3 285 39-359 17-311 (313)
47 KOG0278 Serine/threonine kinas 100.0 6.8E-37 1.5E-41 229.0 17.9 284 40-361 12-299 (334)
48 KOG0313 Microtubule binding pr 100.0 7.2E-36 1.6E-40 235.9 24.5 282 41-359 104-418 (423)
49 KOG0316 Conserved WD40 repeat- 100.0 6.1E-36 1.3E-40 221.9 22.6 247 92-363 12-261 (307)
50 KOG0275 Conserved WD40 repeat- 100.0 1.7E-36 3.6E-41 235.4 17.9 290 41-357 212-507 (508)
51 KOG0292 Vesicle coat complex C 100.0 2.4E-35 5.1E-40 256.0 27.0 283 42-360 9-322 (1202)
52 KOG0283 WD40 repeat-containing 100.0 1.5E-35 3.2E-40 256.7 25.6 255 40-306 265-576 (712)
53 KOG0281 Beta-TrCP (transducin 100.0 1.8E-37 3.8E-42 242.6 12.4 231 98-361 198-430 (499)
54 KOG0266 WD40 repeat-containing 100.0 8.9E-35 1.9E-39 255.2 28.9 244 97-362 159-412 (456)
55 KOG0310 Conserved WD40 repeat- 100.0 8.1E-35 1.8E-39 237.0 26.0 281 41-358 25-308 (487)
56 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-33 9.1E-38 215.7 33.3 287 41-363 13-307 (311)
57 KOG0772 Uncharacterized conser 100.0 8.9E-35 1.9E-39 238.3 24.9 296 38-357 163-485 (641)
58 PTZ00421 coronin; Provisional 100.0 2.1E-33 4.4E-38 245.5 34.5 279 41-336 19-313 (493)
59 KOG0645 WD40 repeat protein [G 100.0 1.1E-33 2.5E-38 214.0 28.1 246 92-361 9-263 (312)
60 KOG0274 Cdc4 and related F-box 100.0 7.3E-34 1.6E-38 248.6 28.8 279 41-363 207-486 (537)
61 KOG0288 WD40 repeat protein Ti 100.0 2.4E-35 5.2E-40 235.3 17.7 284 38-357 171-459 (459)
62 cd00200 WD40 WD40 domain, foun 100.0 3.9E-33 8.4E-38 233.3 32.2 239 41-304 50-289 (289)
63 KOG0277 Peroxisomal targeting 100.0 3.4E-34 7.5E-39 214.9 21.4 246 41-305 59-308 (311)
64 KOG0289 mRNA splicing factor [ 100.0 3.2E-33 6.9E-38 224.6 27.6 283 42-358 219-505 (506)
65 KOG0268 Sof1-like rRNA process 100.0 1.7E-34 3.6E-39 227.0 17.7 281 39-360 63-346 (433)
66 KOG0299 U3 snoRNP-associated p 100.0 4E-33 8.7E-38 225.6 26.1 293 40-357 140-454 (479)
67 KOG0292 Vesicle coat complex C 100.0 1.1E-32 2.3E-37 239.6 29.6 274 14-312 27-327 (1202)
68 KOG0305 Anaphase promoting com 100.0 5.6E-33 1.2E-37 234.5 25.8 276 46-360 181-462 (484)
69 PLN00181 protein SPA1-RELATED; 100.0 5.9E-32 1.3E-36 254.4 35.8 270 12-305 480-792 (793)
70 KOG0282 mRNA splicing factor [ 100.0 1.4E-34 3E-39 235.4 15.1 256 89-363 206-466 (503)
71 KOG0313 Microtubule binding pr 100.0 9.4E-33 2E-37 218.3 24.8 266 12-305 119-417 (423)
72 KOG0647 mRNA export protein (c 100.0 7.3E-32 1.6E-36 207.3 27.5 273 41-347 26-311 (347)
73 PTZ00420 coronin; Provisional 100.0 4E-31 8.8E-36 232.2 33.1 247 60-336 50-316 (568)
74 KOG0973 Histone transcription 100.0 2.8E-32 6E-37 242.4 25.9 301 41-362 12-358 (942)
75 KOG0300 WD40 repeat-containing 100.0 2E-32 4.4E-37 212.1 21.7 305 27-361 133-478 (481)
76 KOG0641 WD40 repeat protein [G 100.0 9E-31 1.9E-35 193.7 29.2 300 41-359 31-349 (350)
77 KOG0305 Anaphase promoting com 100.0 9.5E-32 2.1E-36 227.1 26.6 271 9-309 188-464 (484)
78 KOG0301 Phospholipase A2-activ 100.0 1.2E-31 2.6E-36 227.3 27.2 281 39-363 11-292 (745)
79 KOG0264 Nucleosome remodeling 100.0 3.7E-32 8.1E-37 219.8 23.0 258 40-306 122-404 (422)
80 KOG0310 Conserved WD40 repeat- 100.0 1.1E-31 2.3E-36 219.0 24.9 242 41-306 67-309 (487)
81 KOG0264 Nucleosome remodeling 100.0 4.1E-32 9E-37 219.6 22.0 264 92-360 119-405 (422)
82 KOG1407 WD40 repeat protein [F 100.0 6.7E-32 1.5E-36 203.4 21.5 246 92-361 15-263 (313)
83 KOG0275 Conserved WD40 repeat- 100.0 1.1E-32 2.5E-37 214.1 17.4 274 9-304 207-507 (508)
84 KOG0274 Cdc4 and related F-box 100.0 1.9E-31 4.1E-36 233.5 26.7 267 13-314 223-490 (537)
85 KOG1408 WD40 repeat protein [F 100.0 1.6E-31 3.6E-36 227.5 24.3 335 7-360 335-714 (1080)
86 KOG0308 Conserved WD40 repeat- 100.0 2.9E-32 6.4E-37 229.4 19.4 295 41-360 20-328 (735)
87 PTZ00420 coronin; Provisional 100.0 3E-30 6.5E-35 226.7 33.0 232 117-362 50-296 (568)
88 KOG0294 WD40 repeat-containing 100.0 8.1E-31 1.8E-35 202.7 25.7 244 39-308 40-283 (362)
89 KOG0294 WD40 repeat-containing 100.0 2E-30 4.2E-35 200.6 26.5 277 57-361 4-283 (362)
90 PTZ00421 coronin; Provisional 100.0 2.7E-30 5.8E-35 226.0 30.6 244 100-362 23-293 (493)
91 KOG0306 WD40-repeat-containing 100.0 6E-31 1.3E-35 225.0 25.6 268 9-308 385-666 (888)
92 KOG0283 WD40 repeat-containing 100.0 4.3E-31 9.2E-36 229.1 23.1 244 95-360 265-577 (712)
93 KOG4283 Transcription-coupled 100.0 7.3E-30 1.6E-34 195.9 25.9 300 40-358 41-364 (397)
94 KOG2096 WD40 repeat protein [G 100.0 1E-29 2.2E-34 197.1 24.8 309 20-357 63-400 (420)
95 KOG1036 Mitotic spindle checkp 100.0 3.4E-29 7.3E-34 193.3 27.0 268 41-349 12-294 (323)
96 KOG0278 Serine/threonine kinas 100.0 3.4E-31 7.3E-36 198.5 15.6 243 40-311 57-302 (334)
97 KOG1273 WD40 repeat protein [G 100.0 1.8E-29 3.8E-34 195.5 24.5 286 45-360 26-323 (405)
98 KOG0641 WD40 repeat protein [G 100.0 2.4E-28 5.2E-33 180.9 29.5 248 41-306 88-349 (350)
99 KOG2048 WD40 repeat protein [G 100.0 9.7E-29 2.1E-33 209.3 30.2 288 42-360 25-320 (691)
100 KOG0643 Translation initiation 100.0 7.2E-29 1.6E-33 187.8 24.8 233 93-349 6-251 (327)
101 KOG0299 U3 snoRNP-associated p 100.0 2.1E-29 4.5E-34 204.2 23.3 254 91-361 136-412 (479)
102 KOG0269 WD40 repeat-containing 100.0 4.5E-30 9.8E-35 220.4 20.3 290 41-355 38-336 (839)
103 KOG2055 WD40 repeat protein [G 100.0 4.1E-29 8.8E-34 202.6 24.5 287 41-359 212-512 (514)
104 KOG1446 Histone H3 (Lys4) meth 100.0 6.2E-28 1.3E-32 187.2 29.5 246 97-362 14-265 (311)
105 KOG1539 WD repeat protein [Gen 100.0 9.1E-28 2E-32 207.9 33.5 309 15-359 179-648 (910)
106 KOG0640 mRNA cleavage stimulat 100.0 1.5E-29 3.2E-34 195.6 19.0 256 90-360 105-384 (430)
107 KOG0288 WD40 repeat protein Ti 100.0 1.5E-29 3.3E-34 202.3 19.2 234 41-303 218-458 (459)
108 KOG0973 Histone transcription 100.0 6.8E-29 1.5E-33 221.0 24.8 259 41-308 68-357 (942)
109 KOG0289 mRNA splicing factor [ 100.0 3E-28 6.4E-33 196.2 25.4 259 19-305 242-505 (506)
110 KOG0639 Transducin-like enhanc 100.0 6.1E-29 1.3E-33 203.8 21.7 284 40-358 417-703 (705)
111 KOG1332 Vesicle coat complex C 100.0 3.5E-29 7.6E-34 187.1 17.6 251 95-359 9-286 (299)
112 KOG0268 Sof1-like rRNA process 100.0 1.7E-29 3.6E-34 199.0 16.7 267 12-312 83-351 (433)
113 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.5E-27 1.4E-31 197.4 33.6 272 54-363 1-283 (300)
114 KOG0308 Conserved WD40 repeat- 100.0 3.3E-29 7.1E-34 211.2 18.3 240 102-360 29-286 (735)
115 KOG1332 Vesicle coat complex C 100.0 9.2E-29 2E-33 184.9 17.9 253 40-306 9-286 (299)
116 KOG2106 Uncharacterized conser 100.0 3.4E-26 7.5E-31 187.8 33.9 320 4-358 208-625 (626)
117 KOG1539 WD repeat protein [Gen 100.0 9E-27 2E-31 201.8 32.1 325 11-363 127-610 (910)
118 KOG0321 WD40 repeat-containing 100.0 4.3E-28 9.2E-33 204.1 23.3 294 46-360 53-392 (720)
119 KOG0300 WD40 repeat-containing 100.0 3.8E-28 8.2E-33 188.5 20.8 280 15-308 167-478 (481)
120 KOG0270 WD40 repeat-containing 100.0 2.1E-28 4.7E-33 197.5 20.0 259 44-311 175-454 (463)
121 KOG0772 Uncharacterized conser 100.0 2.6E-28 5.6E-33 200.6 20.2 253 92-360 162-446 (641)
122 KOG0646 WD40 repeat protein [G 100.0 6.6E-28 1.4E-32 195.9 22.1 270 64-361 18-309 (476)
123 KOG1274 WD40 repeat protein [G 100.0 5.3E-27 1.1E-31 205.3 27.9 276 40-356 11-297 (933)
124 KOG0646 WD40 repeat protein [G 100.0 2.6E-27 5.6E-32 192.5 23.8 220 41-283 80-328 (476)
125 KOG2919 Guanine nucleotide-bin 100.0 3.3E-27 7.1E-32 183.5 22.9 291 42-350 49-361 (406)
126 KOG1034 Transcriptional repres 100.0 2.7E-27 5.8E-32 184.3 22.3 298 41-359 37-383 (385)
127 KOG4328 WD40 protein [Function 100.0 4.1E-27 8.8E-32 190.9 22.9 295 41-360 185-496 (498)
128 KOG1036 Mitotic spindle checkp 100.0 3.9E-26 8.4E-31 176.5 24.6 255 15-296 13-294 (323)
129 KOG0267 Microtubule severing p 100.0 1.1E-28 2.3E-33 210.5 11.3 256 54-351 4-260 (825)
130 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5E-25 1.1E-29 186.0 33.5 281 14-336 7-300 (300)
131 KOG0647 mRNA export protein (c 100.0 4.4E-26 9.5E-31 175.7 24.0 259 9-294 40-311 (347)
132 KOG0269 WD40 repeat-containing 100.0 7.9E-28 1.7E-32 206.7 15.7 245 45-307 90-341 (839)
133 KOG0302 Ribosome Assembly prot 100.0 1.4E-26 3E-31 183.5 21.3 258 93-357 147-436 (440)
134 KOG1408 WD40 repeat protein [F 100.0 3.1E-26 6.8E-31 195.6 24.9 295 46-365 328-677 (1080)
135 KOG2445 Nuclear pore complex c 100.0 1.4E-25 2.9E-30 173.4 25.2 258 95-359 11-318 (361)
136 KOG0650 WD40 repeat nucleolar 100.0 2.1E-26 4.6E-31 192.7 22.2 289 39-356 397-732 (733)
137 KOG2106 Uncharacterized conser 100.0 1.2E-24 2.5E-29 178.9 31.4 283 41-360 199-522 (626)
138 KOG0307 Vesicle coat complex C 100.0 1.1E-27 2.5E-32 214.3 14.9 290 46-361 10-329 (1049)
139 KOG2445 Nuclear pore complex c 100.0 2.5E-25 5.4E-30 172.0 25.5 254 40-306 11-318 (361)
140 KOG1063 RNA polymerase II elon 100.0 1.5E-25 3.2E-30 190.7 26.0 304 38-361 263-650 (764)
141 KOG0301 Phospholipase A2-activ 100.0 2.9E-26 6.3E-31 194.9 21.6 238 92-359 9-249 (745)
142 KOG0307 Vesicle coat complex C 100.0 3.6E-27 7.8E-32 211.1 16.9 257 41-309 63-330 (1049)
143 KOG0267 Microtubule severing p 99.9 7.7E-28 1.7E-32 205.3 10.4 234 40-298 26-260 (825)
144 KOG0639 Transducin-like enhanc 99.9 2.6E-26 5.6E-31 188.5 18.7 265 14-305 436-703 (705)
145 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-25 2.7E-30 184.2 21.4 294 11-336 5-303 (673)
146 KOG0270 WD40 repeat-containing 99.9 2.3E-25 4.9E-30 180.2 21.7 292 45-361 128-451 (463)
147 KOG1274 WD40 repeat protein [G 99.9 7.3E-25 1.6E-29 192.1 25.9 245 95-360 11-263 (933)
148 KOG0302 Ribosome Assembly prot 99.9 5.7E-25 1.2E-29 174.4 20.7 221 38-263 147-379 (440)
149 KOG0321 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 183.5 22.6 284 9-308 65-393 (720)
150 KOG2048 WD40 repeat protein [G 99.9 9E-24 1.9E-28 179.5 27.8 243 95-361 23-277 (691)
151 KOG1063 RNA polymerase II elon 99.9 9.7E-24 2.1E-28 179.7 26.9 316 13-359 29-391 (764)
152 KOG2096 WD40 repeat protein [G 99.9 7.6E-25 1.6E-29 170.2 18.2 217 135-359 80-308 (420)
153 KOG4328 WD40 protein [Function 99.9 2.9E-24 6.2E-29 174.5 20.8 260 91-362 180-453 (498)
154 KOG4283 Transcription-coupled 99.9 1.2E-23 2.7E-28 161.8 23.1 250 38-306 97-365 (397)
155 KOG4227 WD40 repeat protein [G 99.9 1E-23 2.2E-28 168.5 21.8 304 38-360 52-388 (609)
156 KOG1273 WD40 repeat protein [G 99.9 7.7E-24 1.7E-28 164.4 19.5 250 100-363 26-284 (405)
157 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-24 8E-29 175.7 18.6 221 46-286 83-305 (673)
158 KOG2055 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 170.0 22.4 271 15-306 213-512 (514)
159 KOG1445 Tumor-specific antigen 99.9 2.4E-23 5.1E-28 176.0 23.6 114 235-361 629-752 (1012)
160 KOG0290 Conserved WD40 repeat- 99.9 2.1E-23 4.5E-28 160.2 21.0 266 15-296 72-356 (364)
161 KOG1188 WD40 repeat protein [G 99.9 2.1E-23 4.5E-28 163.6 20.3 284 55-359 41-346 (376)
162 KOG1009 Chromatin assembly com 99.9 1.3E-22 2.8E-27 162.6 23.9 297 42-363 13-376 (434)
163 KOG1007 WD repeat protein TSSC 99.9 8.5E-23 1.8E-27 156.8 20.7 275 16-306 40-361 (370)
164 KOG1517 Guanine nucleotide bin 99.9 2.4E-22 5.2E-27 178.9 25.5 298 43-363 1065-1385(1387)
165 KOG1538 Uncharacterized conser 99.9 2.5E-22 5.5E-27 170.8 22.1 274 44-360 14-294 (1081)
166 KOG0649 WD40 repeat protein [G 99.9 1.3E-21 2.7E-26 146.9 21.1 255 44-360 12-275 (325)
167 KOG0650 WD40 repeat nucleolar 99.9 4.2E-22 9.1E-27 167.2 20.6 247 91-357 394-678 (733)
168 KOG1963 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 165.6 30.2 315 20-360 183-539 (792)
169 KOG1587 Cytoplasmic dynein int 99.9 1.8E-21 3.8E-26 169.8 25.0 275 19-307 223-517 (555)
170 KOG0290 Conserved WD40 repeat- 99.9 2.1E-21 4.5E-26 149.3 22.4 293 42-355 44-361 (364)
171 KOG2919 Guanine nucleotide-bin 99.9 7E-22 1.5E-26 154.1 19.7 261 19-297 53-361 (406)
172 KOG2110 Uncharacterized conser 99.9 5.7E-20 1.2E-24 146.0 30.5 238 42-307 5-249 (391)
173 KOG0322 G-protein beta subunit 99.9 2E-22 4.3E-27 152.8 15.6 248 93-358 10-322 (323)
174 KOG1034 Transcriptional repres 99.9 1.7E-21 3.7E-26 152.2 20.7 248 40-306 87-383 (385)
175 KOG1007 WD repeat protein TSSC 99.9 7.9E-22 1.7E-26 151.5 18.5 210 41-262 122-361 (370)
176 COG2319 FOG: WD40 repeat [Gene 99.9 2.2E-19 4.8E-24 159.1 36.5 291 39-362 62-362 (466)
177 KOG0642 Cell-cycle nuclear pro 99.9 3E-22 6.4E-27 167.0 16.2 259 40-313 292-568 (577)
178 KOG1240 Protein kinase contain 99.9 1.2E-20 2.5E-25 170.7 26.0 317 22-357 1033-1431(1431)
179 KOG1334 WD40 repeat protein [G 99.9 4.4E-22 9.6E-27 163.2 15.5 296 38-360 138-467 (559)
180 PRK11028 6-phosphogluconolacto 99.9 1.5E-19 3.3E-24 154.0 31.7 277 57-359 5-304 (330)
181 KOG1587 Cytoplasmic dynein int 99.9 9.5E-21 2.1E-25 165.3 24.5 268 64-360 222-517 (555)
182 KOG0303 Actin-binding protein 99.9 6E-21 1.3E-25 152.7 21.1 211 136-362 76-297 (472)
183 KOG0644 Uncharacterized conser 99.9 1.5E-22 3.2E-27 176.1 12.7 276 39-359 187-468 (1113)
184 COG2319 FOG: WD40 repeat [Gene 99.9 2.2E-18 4.9E-23 152.6 39.1 309 15-362 84-403 (466)
185 KOG0303 Actin-binding protein 99.9 9.1E-21 2E-25 151.7 19.2 208 92-311 76-299 (472)
186 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-21 2.9E-26 163.2 14.2 293 48-361 234-563 (577)
187 KOG0649 WD40 repeat protein [G 99.9 3.5E-19 7.7E-24 133.9 24.4 247 39-303 59-313 (325)
188 KOG1538 Uncharacterized conser 99.9 1.9E-20 4.1E-25 159.6 19.7 261 13-306 28-293 (1081)
189 KOG2110 Uncharacterized conser 99.9 4.5E-19 9.8E-24 141.0 25.5 236 99-362 7-251 (391)
190 KOG1009 Chromatin assembly com 99.9 1.4E-19 3.1E-24 145.3 22.5 289 13-311 31-377 (434)
191 KOG1517 Guanine nucleotide bin 99.9 1.8E-19 3.9E-24 160.9 24.8 290 10-309 1077-1384(1387)
192 KOG0322 G-protein beta subunit 99.9 3E-20 6.6E-25 141.1 15.3 245 40-305 12-322 (323)
193 KOG2111 Uncharacterized conser 99.9 6.5E-18 1.4E-22 131.9 28.5 242 43-307 6-257 (346)
194 KOG1523 Actin-related protein 99.9 8.2E-19 1.8E-23 137.0 23.1 209 42-265 10-239 (361)
195 KOG1188 WD40 repeat protein [G 99.8 1.8E-19 4E-24 141.7 18.8 274 12-306 44-346 (376)
196 KOG1524 WD40 repeat-containing 99.8 2.3E-19 5E-24 149.2 19.8 269 40-355 12-282 (737)
197 KOG4227 WD40 repeat protein [G 99.8 4.5E-19 9.8E-24 142.2 20.4 258 92-360 51-323 (609)
198 KOG2111 Uncharacterized conser 99.8 5.8E-18 1.3E-22 132.2 25.1 238 99-361 7-258 (346)
199 PRK11028 6-phosphogluconolacto 99.8 6.9E-17 1.5E-21 137.7 32.2 269 15-306 9-304 (330)
200 KOG1445 Tumor-specific antigen 99.8 5.3E-19 1.2E-23 150.0 18.7 260 53-336 590-869 (1012)
201 PF02239 Cytochrom_D1: Cytochr 99.8 9.5E-17 2.1E-21 136.6 31.0 312 14-362 12-350 (369)
202 KOG1272 WD40-repeat-containing 99.8 1.4E-19 3E-24 147.9 10.7 271 42-351 129-401 (545)
203 PRK01742 tolB translocation pr 99.8 7.5E-18 1.6E-22 148.0 22.0 237 63-336 183-425 (429)
204 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 4.9E-21 138.9 30.8 249 96-359 204-487 (792)
205 KOG2394 WD40 protein DMR-N9 [G 99.8 2.4E-17 5.1E-22 137.4 22.1 238 111-363 135-456 (636)
206 KOG0771 Prolactin regulatory e 99.8 2.2E-18 4.7E-23 139.4 15.0 201 46-263 148-355 (398)
207 KOG1310 WD40 repeat protein [G 99.8 3.7E-18 8.1E-23 142.5 14.6 216 35-264 43-305 (758)
208 KOG0771 Prolactin regulatory e 99.8 8.3E-18 1.8E-22 136.1 16.2 198 101-307 148-355 (398)
209 KOG1272 WD40-repeat-containing 99.8 1.4E-18 3E-23 142.2 11.1 228 100-357 132-360 (545)
210 KOG2139 WD40 repeat protein [G 99.8 4.9E-16 1.1E-20 123.6 24.8 287 41-359 97-431 (445)
211 KOG3881 Uncharacterized conser 99.8 5.8E-17 1.2E-21 130.0 19.7 270 41-336 54-341 (412)
212 KOG3881 Uncharacterized conser 99.8 6.4E-17 1.4E-21 129.8 19.6 245 98-362 56-323 (412)
213 KOG1523 Actin-related protein 99.8 8.1E-17 1.7E-21 126.0 19.2 204 98-309 11-239 (361)
214 KOG0644 Uncharacterized conser 99.8 7.7E-19 1.7E-23 153.3 8.8 243 88-361 181-428 (1113)
215 KOG4497 Uncharacterized conser 99.8 2.5E-16 5.4E-21 123.8 21.0 275 47-360 13-392 (447)
216 KOG2321 WD40 repeat protein [G 99.8 6E-16 1.3E-20 130.2 23.2 279 41-359 50-343 (703)
217 KOG1354 Serine/threonine prote 99.8 2.7E-16 5.8E-21 124.3 19.5 263 41-308 24-361 (433)
218 KOG1240 Protein kinase contain 99.8 6.8E-16 1.5E-20 140.5 24.3 263 93-362 1044-1337(1431)
219 KOG1310 WD40 repeat protein [G 99.8 6.7E-17 1.4E-21 135.2 16.3 222 92-315 45-312 (758)
220 PRK01742 tolB translocation pr 99.7 3.3E-16 7.2E-21 137.7 21.6 211 120-358 183-400 (429)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 3.1E-16 6.6E-21 130.9 19.5 225 45-283 126-383 (636)
222 PRK03629 tolB translocation pr 99.7 7.8E-15 1.7E-19 128.7 26.4 215 98-336 199-427 (429)
223 KOG1334 WD40 repeat protein [G 99.7 2.4E-16 5.2E-21 129.9 15.1 265 91-362 136-427 (559)
224 KOG2139 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 120.1 19.7 250 98-361 99-385 (445)
225 KOG4497 Uncharacterized conser 99.7 1.8E-15 3.9E-20 119.1 17.9 248 102-366 13-357 (447)
226 KOG1524 WD40 repeat-containing 99.7 7.9E-16 1.7E-20 128.5 16.8 208 55-303 76-283 (737)
227 PRK02889 tolB translocation pr 99.7 1.3E-14 2.9E-19 127.4 24.5 220 97-336 195-424 (427)
228 PRK03629 tolB translocation pr 99.7 3.3E-14 7.1E-19 124.8 25.3 234 18-283 179-426 (429)
229 PF02239 Cytochrom_D1: Cytochr 99.7 1.8E-13 4E-18 116.6 27.8 276 55-361 6-304 (369)
230 PRK04922 tolB translocation pr 99.7 2.7E-14 5.9E-19 125.9 23.3 216 97-336 203-432 (433)
231 PF08662 eIF2A: Eukaryotic tra 99.7 1.5E-14 3.2E-19 112.2 17.8 154 193-364 9-184 (194)
232 PRK05137 tolB translocation pr 99.7 1.6E-13 3.5E-18 121.2 26.2 216 96-336 200-432 (435)
233 KOG1409 Uncharacterized conser 99.7 3.9E-14 8.5E-19 112.2 19.5 243 40-307 22-271 (404)
234 KOG0309 Conserved WD40 repeat- 99.6 2E-15 4.3E-20 130.8 12.8 303 41-361 23-341 (1081)
235 PRK02889 tolB translocation pr 99.6 1.4E-13 3E-18 121.0 23.6 216 121-359 176-403 (427)
236 PF08662 eIF2A: Eukaryotic tra 99.6 5.2E-14 1.1E-18 109.1 18.4 160 146-316 9-188 (194)
237 KOG2321 WD40 repeat protein [G 99.6 8.5E-14 1.9E-18 117.5 20.7 245 95-364 49-307 (703)
238 KOG0280 Uncharacterized conser 99.6 2.7E-13 5.9E-18 105.3 21.5 278 62-360 44-334 (339)
239 KOG2315 Predicted translation 99.6 2.7E-12 5.9E-17 108.3 28.3 276 42-363 34-394 (566)
240 PF10282 Lactonase: Lactonase, 99.6 4.9E-11 1.1E-15 102.0 36.8 280 15-312 12-330 (345)
241 PRK04922 tolB translocation pr 99.6 2.2E-13 4.7E-18 120.2 22.9 216 121-361 184-413 (433)
242 PRK05137 tolB translocation pr 99.6 6.7E-13 1.4E-17 117.3 25.6 217 121-362 182-415 (435)
243 PF10282 Lactonase: Lactonase, 99.6 2.9E-11 6.2E-16 103.4 34.7 248 99-359 38-322 (345)
244 KOG0974 WD-repeat protein WDR6 99.6 1.4E-13 3E-18 123.8 19.8 279 41-362 6-291 (967)
245 KOG4190 Uncharacterized conser 99.6 8.5E-15 1.8E-19 123.2 10.6 295 38-355 731-1032(1034)
246 KOG0974 WD-repeat protein WDR6 99.6 3.1E-12 6.7E-17 115.3 26.9 186 12-221 103-289 (967)
247 KOG0280 Uncharacterized conser 99.6 7.9E-13 1.7E-17 102.8 19.0 251 43-308 70-335 (339)
248 KOG1354 Serine/threonine prote 99.6 1.4E-12 3E-17 103.7 20.6 253 99-361 27-361 (433)
249 KOG4547 WD40 repeat-containing 99.6 3.2E-12 6.9E-17 108.5 23.6 191 111-307 5-221 (541)
250 KOG2315 Predicted translation 99.5 6.1E-12 1.3E-16 106.2 23.5 281 16-338 103-412 (566)
251 KOG4547 WD40 repeat-containing 99.5 4.8E-12 1E-16 107.5 22.9 194 51-263 2-221 (541)
252 TIGR02800 propeller_TolB tol-p 99.5 6.6E-12 1.4E-16 111.0 25.2 215 121-360 170-398 (417)
253 KOG1064 RAVE (regulator of V-A 99.5 1.1E-13 2.3E-18 130.9 14.0 199 96-317 2207-2409(2439)
254 KOG1409 Uncharacterized conser 99.5 8.2E-13 1.8E-17 104.9 16.7 253 92-363 19-274 (404)
255 PRK04792 tolB translocation pr 99.5 8.2E-12 1.8E-16 110.2 25.0 216 97-336 217-446 (448)
256 KOG1064 RAVE (regulator of V-A 99.5 1.6E-13 3.5E-18 129.7 14.5 199 41-272 2207-2408(2439)
257 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.3E-16 109.7 25.6 199 98-312 190-402 (417)
258 KOG2041 WD40 repeat protein [G 99.5 1.2E-11 2.7E-16 107.5 23.2 294 41-359 13-337 (1189)
259 COG2706 3-carboxymuconate cycl 99.5 7.1E-10 1.5E-14 89.4 30.8 274 63-360 15-322 (346)
260 PRK00178 tolB translocation pr 99.5 3.2E-11 7E-16 106.8 26.0 216 97-336 198-427 (430)
261 PRK00178 tolB translocation pr 99.5 4.7E-11 1E-15 105.7 26.0 214 122-360 180-407 (430)
262 TIGR02658 TTQ_MADH_Hv methylam 99.5 9.1E-10 2E-14 92.1 31.5 256 64-362 27-333 (352)
263 PRK01029 tolB translocation pr 99.5 1.2E-10 2.6E-15 102.1 27.5 220 99-336 186-424 (428)
264 PRK04792 tolB translocation pr 99.5 5.7E-11 1.2E-15 104.9 23.7 216 41-283 216-445 (448)
265 KOG2314 Translation initiation 99.5 2.8E-10 6E-15 96.4 26.2 309 18-363 213-577 (698)
266 PLN02919 haloacid dehalogenase 99.5 6.8E-10 1.5E-14 107.1 32.8 251 101-363 571-892 (1057)
267 TIGR03300 assembly_YfgL outer 99.4 1.5E-09 3.2E-14 94.6 31.3 289 16-356 73-376 (377)
268 KOG4714 Nucleoporin [Nuclear s 99.4 9.2E-12 2E-16 95.3 14.0 147 111-263 101-255 (319)
269 COG2706 3-carboxymuconate cycl 99.4 1.3E-08 2.8E-13 82.2 32.2 269 17-306 15-321 (346)
270 KOG4190 Uncharacterized conser 99.4 7.2E-13 1.6E-17 111.8 8.4 211 92-314 730-956 (1034)
271 TIGR03300 assembly_YfgL outer 99.4 4.8E-10 1E-14 97.6 26.2 264 54-363 65-342 (377)
272 COG5170 CDC55 Serine/threonine 99.4 2.3E-11 5.1E-16 95.6 15.5 261 41-306 25-367 (460)
273 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.1E-09 1.3E-13 87.2 30.9 268 18-314 27-338 (352)
274 KOG2695 WD40 repeat protein [G 99.4 1.8E-12 4E-17 103.0 8.8 166 159-336 228-402 (425)
275 PRK01029 tolB translocation pr 99.4 3.2E-10 6.9E-15 99.4 23.5 221 121-362 165-406 (428)
276 PLN02919 haloacid dehalogenase 99.4 1.2E-09 2.6E-14 105.5 29.3 252 46-310 571-892 (1057)
277 KOG0309 Conserved WD40 repeat- 99.4 7.6E-12 1.6E-16 109.1 12.3 248 98-359 25-277 (1081)
278 KOG2041 WD40 repeat protein [G 99.4 4.3E-10 9.3E-15 98.2 22.4 272 10-305 9-336 (1189)
279 KOG4532 WD40-like repeat conta 99.4 5.3E-10 1.1E-14 86.3 20.3 238 111-360 84-332 (344)
280 PF04762 IKI3: IKI3 family; I 99.4 6.9E-09 1.5E-13 98.5 32.2 294 42-360 75-457 (928)
281 COG5354 Uncharacterized protei 99.4 1.4E-09 2.9E-14 91.3 23.9 297 17-361 11-350 (561)
282 COG4946 Uncharacterized protei 99.4 1.9E-09 4.1E-14 89.8 24.5 199 50-265 274-480 (668)
283 KOG4532 WD40-like repeat conta 99.3 1.1E-09 2.4E-14 84.6 19.8 207 46-271 71-291 (344)
284 KOG2314 Translation initiation 99.3 3E-09 6.4E-14 90.3 24.0 276 44-359 212-525 (698)
285 COG5354 Uncharacterized protei 99.3 8.8E-09 1.9E-13 86.6 25.2 261 18-307 108-396 (561)
286 KOG1912 WD40 repeat protein [G 99.3 7.7E-10 1.7E-14 97.4 19.1 301 41-363 14-368 (1062)
287 PF15492 Nbas_N: Neuroblastoma 99.3 1.1E-08 2.4E-13 80.2 23.4 242 48-315 3-268 (282)
288 PF04762 IKI3: IKI3 family; I 99.2 2E-08 4.2E-13 95.5 28.6 243 97-360 75-334 (928)
289 COG4946 Uncharacterized protei 99.2 7.2E-08 1.6E-12 80.7 25.4 140 40-202 357-501 (668)
290 KOG3914 WD repeat protein WDR4 99.2 6.3E-10 1.4E-14 90.6 13.2 164 100-272 65-233 (390)
291 KOG3914 WD repeat protein WDR4 99.2 6.3E-10 1.4E-14 90.6 13.1 164 144-317 64-234 (390)
292 KOG1645 RING-finger-containing 99.2 1.2E-08 2.5E-13 83.4 19.5 249 91-359 187-461 (463)
293 KOG4714 Nucleoporin [Nuclear s 99.2 1.9E-09 4.2E-14 82.9 13.8 153 51-221 98-255 (319)
294 PF13360 PQQ_2: PQQ-like domai 99.1 1.1E-07 2.4E-12 77.3 23.6 216 120-362 2-233 (238)
295 PRK11138 outer membrane biogen 99.1 7.5E-07 1.6E-11 78.0 29.9 260 54-358 120-393 (394)
296 PF13360 PQQ_2: PQQ-like domai 99.1 7.8E-08 1.7E-12 78.2 22.2 223 63-313 2-237 (238)
297 KOG1912 WD40 repeat protein [G 99.1 2.3E-08 5E-13 88.4 19.7 243 99-360 17-305 (1062)
298 KOG2695 WD40 repeat protein [G 99.1 4.1E-10 8.9E-15 89.9 7.9 161 104-273 218-387 (425)
299 KOG0882 Cyclophilin-related pe 99.1 5.3E-09 1.1E-13 86.6 14.4 258 40-314 7-313 (558)
300 PF08450 SGL: SMP-30/Gluconola 99.1 7.6E-07 1.7E-11 72.6 27.4 218 47-293 4-242 (246)
301 PF08450 SGL: SMP-30/Gluconola 99.1 1.1E-06 2.4E-11 71.7 28.3 209 102-335 4-233 (246)
302 COG5170 CDC55 Serine/threonine 99.1 6.6E-09 1.4E-13 82.1 13.8 216 42-262 85-367 (460)
303 PF07433 DUF1513: Protein of u 99.0 8.6E-07 1.9E-11 71.9 25.1 232 43-300 5-279 (305)
304 PRK11138 outer membrane biogen 99.0 3.8E-07 8.3E-12 79.9 25.0 272 54-363 69-357 (394)
305 PRK04043 tolB translocation pr 99.0 2.8E-07 6E-12 80.6 23.7 212 121-360 169-401 (419)
306 KOG1275 PAB-dependent poly(A) 99.0 3.4E-08 7.3E-13 88.9 16.3 184 159-362 151-345 (1118)
307 KOG1832 HIV-1 Vpr-binding prot 99.0 6.3E-10 1.4E-14 99.5 5.5 214 41-294 1100-1319(1516)
308 KOG1832 HIV-1 Vpr-binding prot 99.0 5.7E-10 1.2E-14 99.7 4.7 199 91-314 1095-1299(1516)
309 PF15492 Nbas_N: Neuroblastoma 99.0 7.8E-07 1.7E-11 70.1 21.0 208 44-274 45-271 (282)
310 PRK04043 tolB translocation pr 99.0 2.2E-06 4.8E-11 75.0 26.4 192 99-307 189-401 (419)
311 KOG2066 Vacuolar assembly/sort 98.9 6E-08 1.3E-12 86.2 15.4 186 98-307 40-234 (846)
312 KOG0882 Cyclophilin-related pe 98.9 6.9E-08 1.5E-12 80.2 13.9 254 96-363 8-309 (558)
313 KOG3617 WD40 and TPR repeat-co 98.9 5.9E-08 1.3E-12 86.8 14.1 302 1-338 1-367 (1416)
314 KOG2066 Vacuolar assembly/sort 98.9 1.8E-07 3.8E-12 83.3 16.6 186 41-263 38-234 (846)
315 KOG2114 Vacuolar assembly/sort 98.9 2.4E-06 5.2E-11 77.0 23.0 204 104-315 30-252 (933)
316 PF07433 DUF1513: Protein of u 98.8 2.8E-05 6.1E-10 63.3 26.8 228 99-350 6-277 (305)
317 KOG2114 Vacuolar assembly/sort 98.8 2.1E-06 4.5E-11 77.4 21.2 212 44-276 27-258 (933)
318 KOG1920 IkappaB kinase complex 98.8 3.5E-06 7.7E-11 78.7 23.3 240 98-360 69-323 (1265)
319 KOG1275 PAB-dependent poly(A) 98.8 2.3E-07 5E-12 83.8 15.2 181 55-261 148-341 (1118)
320 KOG3617 WD40 and TPR repeat-co 98.7 3.7E-07 8E-12 82.0 14.4 188 45-261 18-219 (1416)
321 KOG1645 RING-finger-containing 98.7 1.4E-06 3E-11 71.7 16.5 246 39-306 190-461 (463)
322 PF00400 WD40: WD domain, G-be 98.7 3.3E-08 7.1E-13 54.8 5.1 32 323-357 8-39 (39)
323 PF06433 Me-amine-dh_H: Methyl 98.7 6.9E-05 1.5E-09 61.9 26.0 262 64-363 17-324 (342)
324 KOG1008 Uncharacterized conser 98.7 1.6E-08 3.5E-13 87.5 5.0 204 99-306 58-275 (783)
325 cd00216 PQQ_DH Dehydrogenases 98.7 4.3E-05 9.2E-10 68.8 27.0 281 54-363 61-428 (488)
326 PF00400 WD40: WD domain, G-be 98.7 6.3E-08 1.4E-12 53.6 5.6 39 264-304 1-39 (39)
327 PF04053 Coatomer_WDAD: Coatom 98.7 1.7E-05 3.7E-10 69.4 22.1 223 41-307 31-263 (443)
328 PF08596 Lgl_C: Lethal giant l 98.7 2.4E-05 5.2E-10 67.5 22.7 278 44-357 3-333 (395)
329 KOG1920 IkappaB kinase complex 98.6 2.1E-05 4.5E-10 73.9 23.2 199 43-264 69-324 (1265)
330 KOG3621 WD40 repeat-containing 98.6 1.2E-05 2.5E-10 71.2 19.7 150 99-253 35-190 (726)
331 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00013 2.8E-09 57.1 24.7 143 54-221 23-166 (354)
332 PF06433 Me-amine-dh_H: Methyl 98.6 0.00024 5.3E-09 58.7 25.4 274 18-315 17-329 (342)
333 KOG1008 Uncharacterized conser 98.6 2.7E-08 6E-13 86.2 2.6 203 42-263 56-276 (783)
334 cd00216 PQQ_DH Dehydrogenases 98.6 0.00037 8E-09 62.8 28.6 242 55-317 111-435 (488)
335 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00018 4E-09 56.2 25.8 267 54-361 63-353 (354)
336 PRK02888 nitrous-oxide reducta 98.5 3.5E-05 7.5E-10 68.8 20.9 277 56-360 68-405 (635)
337 PF06977 SdiA-regulated: SdiA- 98.5 0.00028 6.1E-09 56.6 24.9 207 137-356 17-247 (248)
338 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00018 3.9E-09 62.0 24.3 263 51-347 1-345 (353)
339 PRK02888 nitrous-oxide reducta 98.5 4.8E-05 1E-09 68.0 20.4 182 100-295 237-450 (635)
340 KOG3621 WD40 repeat-containing 98.5 7.3E-05 1.6E-09 66.4 21.1 118 41-173 32-154 (726)
341 PF06977 SdiA-regulated: SdiA- 98.5 0.00036 7.8E-09 56.0 24.3 198 98-303 22-247 (248)
342 PF11768 DUF3312: Protein of u 98.5 5.8E-05 1.3E-09 65.8 19.8 116 144-264 207-331 (545)
343 PF03178 CPSF_A: CPSF A subuni 98.4 0.00035 7.5E-09 59.5 23.7 223 121-356 2-262 (321)
344 PF02897 Peptidase_S9_N: Proly 98.4 0.0011 2.5E-08 58.7 28.3 248 100-362 126-407 (414)
345 COG0823 TolB Periplasmic compo 98.4 0.00016 3.6E-09 63.1 20.6 177 122-310 174-362 (425)
346 PF04053 Coatomer_WDAD: Coatom 98.4 0.00085 1.9E-08 59.0 24.9 218 98-360 33-263 (443)
347 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00058 1.2E-08 59.0 23.6 265 15-294 20-345 (353)
348 PF11768 DUF3312: Protein of u 98.3 9.7E-05 2.1E-09 64.5 18.2 116 98-222 206-331 (545)
349 PF08553 VID27: VID27 cytoplas 98.3 4.3E-05 9.3E-10 70.7 16.3 146 111-261 493-646 (794)
350 PF03178 CPSF_A: CPSF A subuni 98.3 0.00026 5.6E-09 60.3 20.0 179 166-360 3-203 (321)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0032 6.9E-08 57.2 28.8 203 54-267 69-338 (527)
352 PF02897 Peptidase_S9_N: Proly 98.2 0.0035 7.7E-08 55.6 28.2 247 44-311 125-409 (414)
353 PF00780 CNH: CNH domain; Int 98.2 0.0023 5E-08 53.2 27.0 228 52-315 5-264 (275)
354 PF00780 CNH: CNH domain; Int 98.2 0.0027 5.8E-08 52.8 25.6 221 111-363 7-259 (275)
355 PF14583 Pectate_lyase22: Olig 98.2 0.0031 6.8E-08 53.4 24.8 307 24-359 16-381 (386)
356 PF08596 Lgl_C: Lethal giant l 98.2 0.0036 7.8E-08 54.3 24.0 235 99-360 3-291 (395)
357 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00038 8.1E-09 47.4 14.0 103 100-215 2-109 (111)
358 KOG4441 Proteins containing BT 98.1 0.0017 3.6E-08 59.5 22.0 226 111-360 285-547 (571)
359 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0066 1.4E-07 53.3 25.0 192 122-336 62-269 (410)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0086 1.9E-07 54.5 31.6 61 254-317 441-501 (527)
361 COG0823 TolB Periplasmic compo 98.0 0.0004 8.8E-09 60.7 16.2 185 98-296 193-389 (425)
362 COG3386 Gluconolactonase [Carb 98.0 0.0035 7.6E-08 52.3 20.6 145 99-250 112-273 (307)
363 PF08553 VID27: VID27 cytoplas 98.0 0.0011 2.5E-08 61.7 18.8 146 155-306 494-647 (794)
364 COG3391 Uncharacterized conser 98.0 0.0096 2.1E-07 51.9 24.3 202 100-314 76-291 (381)
365 KOG2395 Protein involved in va 98.0 0.001 2.2E-08 57.6 16.5 144 112-261 347-499 (644)
366 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0017 3.7E-08 44.3 13.9 101 196-302 9-110 (111)
367 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.012 2.6E-07 51.1 24.9 82 234-316 308-408 (415)
368 KOG1897 Damage-specific DNA bi 97.9 0.021 4.5E-07 53.6 30.3 228 111-360 684-943 (1096)
369 KOG2444 WD40 repeat protein [G 97.9 2E-05 4.3E-10 60.4 5.0 140 159-307 34-178 (238)
370 COG3386 Gluconolactonase [Carb 97.9 0.011 2.4E-07 49.4 22.9 220 49-294 31-273 (307)
371 KOG4640 Anaphase-promoting com 97.9 0.0001 2.2E-09 64.7 9.0 94 98-199 21-115 (665)
372 PHA02713 hypothetical protein; 97.8 0.0055 1.2E-07 56.2 20.5 216 122-361 273-535 (557)
373 COG3391 Uncharacterized conser 97.8 0.018 3.9E-07 50.2 25.9 239 100-361 33-285 (381)
374 KOG1897 Damage-specific DNA bi 97.8 0.033 7.2E-07 52.3 31.7 124 41-177 486-617 (1096)
375 COG3490 Uncharacterized protei 97.8 0.0057 1.2E-07 48.9 16.5 213 144-364 69-315 (366)
376 PF05096 Glu_cyclase_2: Glutam 97.7 0.015 3.2E-07 46.8 23.1 200 134-347 36-249 (264)
377 KOG2444 WD40 repeat protein [G 97.7 5.9E-05 1.3E-09 57.8 5.1 143 204-360 32-178 (238)
378 KOG4640 Anaphase-promoting com 97.7 0.00017 3.6E-09 63.4 8.3 95 42-152 20-115 (665)
379 KOG2395 Protein involved in va 97.7 0.0058 1.3E-07 53.1 16.4 151 148-306 339-500 (644)
380 KOG2079 Vacuolar assembly/sort 97.6 0.0004 8.7E-09 64.9 9.5 101 203-305 100-202 (1206)
381 PF05694 SBP56: 56kDa selenium 97.6 0.028 6.2E-07 48.3 19.4 203 54-264 87-344 (461)
382 KOG4441 Proteins containing BT 97.6 0.012 2.5E-07 54.1 18.5 231 51-309 282-549 (571)
383 smart00320 WD40 WD40 repeats. 97.6 0.00015 3.3E-09 39.1 4.2 30 41-70 11-40 (40)
384 COG3490 Uncharacterized protei 97.6 0.028 6.1E-07 45.2 18.9 239 43-304 68-346 (366)
385 PHA02713 hypothetical protein; 97.6 0.0047 1E-07 56.7 15.6 186 111-309 304-536 (557)
386 KOG4499 Ca2+-binding protein R 97.5 0.026 5.6E-07 44.0 18.4 208 111-336 27-263 (310)
387 COG3204 Uncharacterized protei 97.5 0.038 8.1E-07 44.8 18.2 170 97-271 85-271 (316)
388 PF04841 Vps16_N: Vps16, N-ter 97.5 0.064 1.4E-06 47.3 27.1 171 98-283 81-268 (410)
389 PRK13616 lipoprotein LpqB; Pro 97.5 0.035 7.6E-07 51.1 20.0 188 41-257 348-563 (591)
390 smart00320 WD40 WD40 repeats. 97.4 0.00039 8.4E-09 37.4 4.7 38 265-304 3-40 (40)
391 KOG2079 Vacuolar assembly/sort 97.4 0.00095 2.1E-08 62.6 8.8 97 158-261 102-202 (1206)
392 COG3204 Uncharacterized protei 97.4 0.054 1.2E-06 43.9 19.8 170 38-222 81-265 (316)
393 PRK13616 lipoprotein LpqB; Pro 97.2 0.13 2.8E-06 47.5 20.3 148 99-262 351-525 (591)
394 PF14870 PSII_BNR: Photosynthe 97.1 0.06 1.3E-06 44.9 15.8 152 98-259 145-301 (302)
395 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0021 4.5E-08 36.6 5.1 31 42-72 11-41 (47)
396 PF14583 Pectate_lyase22: Olig 97.1 0.16 3.5E-06 43.4 22.1 224 103-350 41-303 (386)
397 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0023 4.9E-08 36.4 5.0 35 326-363 11-45 (47)
398 PHA03098 kelch-like protein; P 97.0 0.14 3E-06 47.3 19.0 185 155-361 295-513 (534)
399 PF15390 DUF4613: Domain of un 97.0 0.055 1.2E-06 48.1 14.7 129 39-173 53-186 (671)
400 PHA03098 kelch-like protein; P 96.8 0.25 5.5E-06 45.5 19.1 186 111-309 295-514 (534)
401 TIGR03074 PQQ_membr_DH membran 96.8 0.51 1.1E-05 45.1 22.7 200 154-362 194-480 (764)
402 PHA02790 Kelch-like protein; P 96.7 0.47 1E-05 43.0 19.3 183 154-361 271-472 (480)
403 PHA02790 Kelch-like protein; P 96.6 0.41 8.8E-06 43.4 18.6 182 111-308 272-472 (480)
404 PF12234 Rav1p_C: RAVE protein 96.6 0.21 4.6E-06 45.9 16.3 105 111-219 41-155 (631)
405 PF12234 Rav1p_C: RAVE protein 96.6 0.12 2.7E-06 47.3 14.8 105 243-358 40-155 (631)
406 KOG4499 Ca2+-binding protein R 96.5 0.28 6.1E-06 38.5 17.8 134 144-283 110-262 (310)
407 PF05694 SBP56: 56kDa selenium 96.5 0.49 1.1E-05 41.1 18.0 126 100-228 183-350 (461)
408 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.55 1.2E-05 41.2 27.0 146 111-261 37-203 (418)
409 PRK10115 protease 2; Provision 96.4 0.91 2E-05 43.2 33.9 244 43-309 127-397 (686)
410 COG5276 Uncharacterized conser 96.4 0.42 9.1E-06 39.0 29.0 274 42-358 86-368 (370)
411 PF05096 Glu_cyclase_2: Glutam 96.4 0.42 9E-06 38.7 23.8 160 99-271 46-212 (264)
412 PF08728 CRT10: CRT10; InterP 96.4 0.43 9.3E-06 44.5 16.7 161 54-219 49-245 (717)
413 PF15390 DUF4613: Domain of un 96.3 0.78 1.7E-05 41.3 17.6 120 98-221 57-187 (671)
414 TIGR03074 PQQ_membr_DH membran 96.3 1.1 2.4E-05 42.9 22.3 200 111-316 194-487 (764)
415 COG5167 VID27 Protein involved 96.3 0.61 1.3E-05 41.1 16.1 142 112-262 481-632 (776)
416 KOG2280 Vacuolar assembly/sort 96.2 0.18 3.9E-06 46.3 13.1 183 120-316 63-256 (829)
417 PF10647 Gmad1: Lipoprotein Lp 96.1 0.61 1.3E-05 38.1 16.3 152 191-351 25-187 (253)
418 KOG3630 Nuclear pore complex, 96.1 0.14 3.1E-06 49.2 12.3 142 99-249 102-260 (1405)
419 PF07995 GSDH: Glucose / Sorbo 96.1 0.81 1.8E-05 39.2 23.4 241 44-301 3-330 (331)
420 COG3823 Glutamine cyclotransfe 96.0 0.49 1.1E-05 36.5 14.1 179 156-347 57-247 (262)
421 PF10168 Nup88: Nuclear pore c 96.0 0.29 6.3E-06 46.2 14.2 82 276-360 86-180 (717)
422 COG5167 VID27 Protein involved 95.8 0.47 1E-05 41.8 13.4 147 150-306 475-632 (776)
423 KOG2377 Uncharacterized conser 95.8 0.34 7.3E-06 42.0 12.3 156 146-308 26-187 (657)
424 PRK10115 protease 2; Provision 95.8 1.9 4.2E-05 41.1 30.6 197 99-306 128-344 (686)
425 PF08728 CRT10: CRT10; InterP 95.7 0.9 1.9E-05 42.5 15.7 118 235-358 102-245 (717)
426 PF10313 DUF2415: Uncharacteri 95.7 0.091 2E-06 29.0 5.8 32 191-222 2-35 (43)
427 PRK13684 Ycf48-like protein; P 95.6 1.3 2.9E-05 37.9 17.2 152 98-260 173-329 (334)
428 PF07995 GSDH: Glucose / Sorbo 95.5 1.4 3E-05 37.8 25.7 240 100-354 4-330 (331)
429 PF10647 Gmad1: Lipoprotein Lp 95.4 1.3 2.7E-05 36.3 21.4 147 99-253 25-186 (253)
430 PF10313 DUF2415: Uncharacteri 95.3 0.079 1.7E-06 29.2 4.8 31 43-73 1-34 (43)
431 KOG3630 Nuclear pore complex, 95.3 0.18 4E-06 48.5 10.0 154 42-207 100-260 (1405)
432 KOG2247 WD40 repeat-containing 95.2 0.003 6.6E-08 54.3 -1.3 148 100-258 37-184 (615)
433 PF10168 Nup88: Nuclear pore c 95.1 3.1 6.7E-05 39.6 21.8 112 17-131 41-181 (717)
434 PF14727 PHTB1_N: PTHB1 N-term 94.8 2.6 5.7E-05 37.1 33.8 279 54-362 37-363 (418)
435 PF14781 BBS2_N: Ciliary BBSom 94.6 1.1 2.5E-05 32.0 11.4 109 243-362 9-128 (136)
436 KOG2377 Uncharacterized conser 94.5 1.2 2.7E-05 38.7 12.0 140 100-246 25-167 (657)
437 COG3823 Glutamine cyclotransfe 94.3 2 4.3E-05 33.4 14.0 152 111-271 56-213 (262)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.78 1.7E-05 40.2 10.8 86 95-184 305-407 (415)
439 KOG1983 Tomosyn and related SN 94.1 2.1 4.6E-05 42.4 14.5 27 285-311 243-269 (993)
440 TIGR02604 Piru_Ver_Nterm putat 94.1 3.8 8.1E-05 35.8 23.5 147 43-209 14-202 (367)
441 PF07569 Hira: TUP1-like enhan 94.0 0.34 7.4E-06 38.5 7.6 70 286-359 20-95 (219)
442 PLN00033 photosystem II stabil 94.0 4.1 8.9E-05 35.8 17.6 147 100-259 241-396 (398)
443 PLN02153 epithiospecifier prot 93.8 3.9 8.5E-05 35.2 20.9 151 111-265 33-228 (341)
444 KOG4460 Nuclear pore complex, 93.7 2 4.4E-05 38.2 12.0 26 235-260 105-131 (741)
445 KOG2247 WD40 repeat-containing 93.7 0.0097 2.1E-07 51.4 -1.7 132 147-289 39-172 (615)
446 COG5276 Uncharacterized conser 93.5 3.6 7.9E-05 33.8 22.8 234 46-305 132-368 (370)
447 PF14781 BBS2_N: Ciliary BBSom 93.4 2.1 4.5E-05 30.7 12.5 115 148-269 4-132 (136)
448 KOG1916 Nuclear protein, conta 93.4 0.071 1.5E-06 49.8 3.1 229 120-358 110-373 (1283)
449 TIGR03118 PEPCTERM_chp_1 conse 93.2 4.3 9.3E-05 33.7 24.3 229 100-336 25-307 (336)
450 KOG1898 Splicing factor 3b, su 93.2 9.2 0.0002 37.4 18.7 177 167-359 855-1048(1205)
451 TIGR03548 mutarot_permut cycli 93.0 5.2 0.00011 34.2 20.2 104 203-309 74-197 (323)
452 PLN02193 nitrile-specifier pro 92.8 7.3 0.00016 35.3 19.7 103 203-310 230-355 (470)
453 PRK14131 N-acetylneuraminic ac 92.8 6.3 0.00014 34.6 21.1 22 340-361 343-370 (376)
454 TIGR03118 PEPCTERM_chp_1 conse 92.7 5 0.00011 33.3 20.1 218 45-273 25-290 (336)
455 KOG4460 Nuclear pore complex, 92.7 6.9 0.00015 35.1 13.6 50 191-242 105-154 (741)
456 KOG2063 Vacuolar assembly/sort 92.4 11 0.00024 36.6 18.0 79 50-133 22-100 (877)
457 PF14870 PSII_BNR: Photosynthe 92.3 6.1 0.00013 33.2 32.0 279 42-356 16-301 (302)
458 TIGR02604 Piru_Ver_Nterm putat 92.3 7.2 0.00016 34.0 23.6 144 99-251 15-202 (367)
459 PLN02153 epithiospecifier prot 92.2 6.9 0.00015 33.7 20.2 60 203-264 87-169 (341)
460 PLN02193 nitrile-specifier pro 92.1 9.1 0.0002 34.8 23.7 148 154-310 228-414 (470)
461 PF08801 Nucleoporin_N: Nup133 92.0 8.5 0.00018 34.4 14.3 31 327-360 190-220 (422)
462 PLN00033 photosystem II stabil 91.7 8.9 0.00019 33.8 19.0 149 45-217 241-396 (398)
463 COG3292 Predicted periplasmic 91.6 10 0.00023 34.4 15.3 274 41-354 163-442 (671)
464 PF10395 Utp8: Utp8 family; I 91.6 12 0.00026 35.0 23.7 245 102-362 32-308 (670)
465 PF10395 Utp8: Utp8 family; I 91.5 12 0.00026 35.0 21.9 167 143-315 130-314 (670)
466 PF07569 Hira: TUP1-like enhan 91.5 1.8 3.9E-05 34.5 8.5 61 111-173 22-95 (219)
467 PF12657 TFIIIC_delta: Transcr 91.2 2.6 5.7E-05 32.1 8.9 33 98-130 86-122 (173)
468 KOG1900 Nuclear pore complex, 91.0 3.9 8.5E-05 40.7 11.4 140 120-263 98-273 (1311)
469 TIGR02276 beta_rpt_yvtn 40-res 90.9 1.5 3.2E-05 23.9 5.6 33 152-186 1-33 (42)
470 PF12657 TFIIIC_delta: Transcr 90.7 4.6 9.9E-05 30.8 9.8 32 190-221 86-122 (173)
471 PF02333 Phytase: Phytase; In 90.6 11 0.00023 32.8 21.3 193 155-360 68-291 (381)
472 PF14761 HPS3_N: Hermansky-Pud 90.5 7.2 0.00015 30.6 16.8 146 204-359 30-214 (215)
473 COG1520 FOG: WD40-like repeat 90.5 11 0.00024 32.9 21.9 223 110-357 67-303 (370)
474 KOG1900 Nuclear pore complex, 90.1 7 0.00015 39.1 12.2 159 193-360 82-273 (1311)
475 PF11635 Med16: Mediator compl 90.0 20 0.00043 34.9 19.3 190 112-301 63-345 (753)
476 COG4590 ABC-type uncharacteriz 89.8 1.2 2.5E-05 38.9 6.3 161 144-311 222-391 (733)
477 KOG1916 Nuclear protein, conta 89.7 0.91 2E-05 43.0 5.9 119 44-180 185-328 (1283)
478 PF13449 Phytase-like: Esteras 89.5 12 0.00027 32.0 15.8 162 190-359 20-249 (326)
479 PF14761 HPS3_N: Hermansky-Pud 89.5 8.8 0.00019 30.2 11.6 47 112-161 29-77 (215)
480 COG4590 ABC-type uncharacteriz 89.5 3.3 7.1E-05 36.2 8.7 163 41-222 219-388 (733)
481 KOG2280 Vacuolar assembly/sort 89.4 19 0.00042 34.0 19.6 205 42-271 43-255 (829)
482 KOG1898 Splicing factor 3b, su 89.4 23 0.00051 34.8 17.6 181 19-220 854-1048(1205)
483 PF10214 Rrn6: RNA polymerase 89.2 23 0.00049 34.6 18.4 174 42-219 145-328 (765)
484 TIGR03606 non_repeat_PQQ dehyd 89.0 16 0.00034 32.8 12.9 115 43-163 30-166 (454)
485 PRK14131 N-acetylneuraminic ac 88.7 16 0.00034 32.1 23.7 22 111-132 85-117 (376)
486 PF01011 PQQ: PQQ enzyme repea 88.1 2.4 5.2E-05 22.7 4.8 28 290-317 2-29 (38)
487 smart00564 PQQ beta-propeller 87.8 1.5 3.2E-05 22.4 3.8 26 289-314 7-32 (33)
488 smart00036 CNH Domain found in 87.4 17 0.00036 30.8 23.9 59 111-173 13-73 (302)
489 PF07676 PD40: WD40-like Beta 87.4 3 6.5E-05 22.3 5.0 27 144-170 10-38 (39)
490 PF12768 Rax2: Cortical protei 86.9 17 0.00036 30.3 14.2 99 164-269 15-130 (281)
491 KOG3616 Selective LIM binding 86.7 6 0.00013 37.1 9.0 68 99-173 16-83 (1636)
492 PF11715 Nup160: Nucleoporin N 86.4 5.2 0.00011 37.2 9.0 31 287-317 229-259 (547)
493 PF11715 Nup160: Nucleoporin N 86.3 3.4 7.3E-05 38.4 7.7 84 52-138 156-257 (547)
494 TIGR02276 beta_rpt_yvtn 40-res 86.2 3.8 8.2E-05 22.2 5.3 32 199-231 1-32 (42)
495 TIGR03547 muta_rot_YjhT mutatr 85.9 22 0.00048 30.7 22.3 23 111-133 64-97 (346)
496 TIGR03548 mutarot_permut cycli 85.8 21 0.00046 30.4 22.8 92 203-297 125-233 (323)
497 TIGR03547 muta_rot_YjhT mutatr 84.8 25 0.00054 30.4 20.7 40 212-253 168-210 (346)
498 PF12768 Rax2: Cortical protei 84.6 22 0.00048 29.6 14.2 91 212-305 16-122 (281)
499 PF12341 DUF3639: Protein of u 82.9 4.2 9E-05 19.9 3.7 26 43-70 2-27 (27)
500 COG5290 IkappaB kinase complex 82.7 37 0.00081 32.5 12.1 58 14-71 75-141 (1243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-54 Score=338.60 Aligned_cols=307 Identities=22% Similarity=0.329 Sum_probs=265.0
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
.++.+...||++++...... -+|...|.|++|+|||+.||+|+.||.|++||.+++++.. +.+.
T Consensus 134 sGD~TvR~WD~~TeTp~~t~----KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g------------~~l~ 197 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTC----KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG------------RALR 197 (480)
T ss_pred CCCceEEeeccCCCCcceee----cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc------------cccc
Confidence 34444444444444333222 1399999999999999999999999999999998876543 1344
Q ss_pred ecCCceeEEEEecC---CCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 95 CTPAKLSSLKWKPG---TSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 95 ~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
+|...|++++|.|- +..++|++++.||.|+|||+..+.++..+.+|+. +|+|+.|-- .-++++|+.|++|++|+
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG--~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGG--EGLIYSGSQDRTIKVWR 274 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcC--CceEEecCCCceEEEEE
Confidence 55678999999873 3468999999999999999999999999999998 999999973 44679999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEc-----------CCC------------------------CcEEEEEecCCeEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFH-----------PFG------------------------SSLVAAGCADKKAYA 216 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~------------------------~~~l~~~~~d~~i~i 216 (366)
.. .+.+.+.++.++ ..|+.++.+ |.+ ...+++|+.|.++.+
T Consensus 275 a~--dG~~~r~lkGHa--hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 275 AL--DGKLCRELKGHA--HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred cc--chhHHHhhcccc--hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence 98 789999998544 489888877 222 136999999999999
Q ss_pred EecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec
Q 017773 217 YDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 217 ~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
|+.....+++..+.+|...|+.+.|+ ++.++++++.|..|++||.++|+.+.+|++|-..|+.++|+ .|.++|++|+
T Consensus 351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws--aDsRLlVS~S 428 (480)
T KOG0271|consen 351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS--ADSRLLVSGS 428 (480)
T ss_pred ecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec--cCccEEEEcC
Confidence 99988878999999999999999999 99999999999999999999999999999999999999888 9999999999
Q ss_pred CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 296 ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.|.++++|++++.+....+ ++|...|.++.|+| ||+.+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DL--------pGh~DEVf~vDwsp---DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDL--------PGHADEVFAVDWSP---DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccC--------CCCCceEEEEEecC---CCceeecCCCceEEEeec
Confidence 9999999999988776554 78999999999999 999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-53 Score=333.87 Aligned_cols=315 Identities=24% Similarity=0.365 Sum_probs=270.4
Q ss_pred cccccceeeeeecCCCc---eeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 13 ETTNERARCEWDFNLRT---TVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~---~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
...++...+.+.+..-. -++.......+|.++|.|++|+|+|+.||+|+.|.++|+||+.+..... +..+|.
T Consensus 83 v~te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~-- 157 (480)
T KOG0271|consen 83 VSTEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHK-- 157 (480)
T ss_pred cchhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCc--
Confidence 34445555566554322 1233334456799999999999999999999999999999999866544 555554
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccC-----CCceEEEecC
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKG-----DPVLGASGSD 163 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~~ 163 (366)
.-|.|++|+|| |+.||+|+.||+|++||..+++++ ..+.+|.. .|++++|.|- .+++ ++++.
T Consensus 158 --------~WVlcvawsPD--gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-~It~Lawep~hl~p~~r~l-as~sk 225 (480)
T KOG0271|consen 158 --------NWVLCVAWSPD--GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-WITALAWEPLHLVPPCRRL-ASSSK 225 (480)
T ss_pred --------cEEEEEEECCC--cchhhccccCCeEEEecCCCCCcccccccCccc-ceeEEeecccccCCCccce-ecccC
Confidence 57999999999 999999999999999999998765 56788887 9999999873 4545 99999
Q ss_pred CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL- 242 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~- 242 (366)
||.++|||+. .+.++..+. +|..+|+|+.|--+| ++++|+.|++|++|+...+ ...+.+++|...|+.++.+
T Consensus 226 Dg~vrIWd~~--~~~~~~~ls--gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsT 298 (480)
T KOG0271|consen 226 DGSVRIWDTK--LGTCVRTLS--GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALST 298 (480)
T ss_pred CCCEEEEEcc--CceEEEEec--cCccceEEEEEcCCc--eEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccc
Confidence 9999999999 778888877 899999999999765 9999999999999999887 7899999999999999886
Q ss_pred C------------------------------------CCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEe
Q 017773 243 D------------------------------------VDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVW 285 (366)
Q Consensus 243 ~------------------------------------~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 285 (366)
+ +..|++|+.|.++.+|+.... +++..+.+|..-|+.+.|+
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS-- 376 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS-- 376 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC--
Confidence 2 235999999999999997654 6889999999998888887
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCCC
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPLS 364 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l~ 364 (366)
||++++|+++.|..|++||-++|+.+..+ ++|-+.|..++|+. |.++|++|+.|.++++|+++++++.
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasf--------RGHv~~VYqvawsa---DsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASF--------RGHVAAVYQVAWSA---DSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhh--------hhccceeEEEEecc---CccEEEEcCCCceEEEEEeeeeeec
Confidence 99999999999999999999999988776 78999999999999 8889999999999999999998764
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-52 Score=331.55 Aligned_cols=283 Identities=21% Similarity=0.303 Sum_probs=260.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-..+|..+.|+++++.||||+.+|.+++|+..+..... . +.+|.+.|.++.|+|..++..+++|+.|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~----------l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---T----------LRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---E----------EeccccceeeEEEccCCCccceeeeccC
Confidence 58899999999999999999999999999998764433 3 4455678999999997446799999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
|++++|++++..++..+.+|.. +|..++|+|+|++| ++++.|.+-++||++ ++..+.... +|...|.+++|+|+
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~-RVs~VafHPsG~~L-~TasfD~tWRlWD~~--tk~ElL~QE--GHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLA-RVSRVAFHPSGKFL-GTASFDSTWRLWDLE--TKSELLLQE--GHSKGVFSIAFQPD 314 (459)
T ss_pred CceeeeccCCCcchhhhhcchh-hheeeeecCCCcee-eecccccchhhcccc--cchhhHhhc--ccccccceeEecCC
Confidence 9999999999999999999997 99999999999998 999999999999999 555555444 88899999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
| .++++|+.|..-+|||+|++ ..+..+.+|..+|..++|+ +|..++||+.|++++|||++..+.+.++.+|.+-|+.
T Consensus 315 G-SL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 315 G-SLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ 392 (459)
T ss_pred C-ceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh
Confidence 9 89999999999999999999 7899999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 280 VGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 280 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
+.+. | .|.+|++++.|++++||..++.+++..+ .||.+.|.++.++| |++.+++++.|.++++|.
T Consensus 393 Vk~~--p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--------aGHe~kV~s~Dis~---d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYS--PQEGYFLVTASYDNTVKIWSTRTWSPLKSL--------AGHEGKVISLDISP---DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEec--ccCCeEEEEcccCcceeeecCCCcccchhh--------cCCccceEEEEecc---CCceEEEeccCceeeecc
Confidence 9988 6 8899999999999999999999988776 78999999999999 888999999999999995
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-45 Score=278.46 Aligned_cols=300 Identities=20% Similarity=0.313 Sum_probs=256.8
Q ss_pred CccCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 38 NAAVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
..+|++.|+.++..+.+ +.++++++|..+.+|++....... ..+.+.+.+|...|..+..+++ |++.++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--------G~~~r~~~GHsH~v~dv~~s~d--g~~alS 80 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--------GVPVRRLTGHSHFVSDVVLSSD--GNFALS 80 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--------CceeeeeeccceEecceEEccC--CceEEe
Confidence 34599999999999974 689999999999999998753222 2233456667778999999999 999999
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
++.|+++++||+.+++..+.+.+|.. .|.+++|+++++.+ ++|+.|.+|++|++. +.+..++....+.+.|.|+.
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~-dVlsva~s~dn~qi-vSGSrDkTiklwnt~---g~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTK-DVLSVAFSTDNRQI-VSGSRDKTIKLWNTL---GVCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCC-ceEEEEecCCCcee-ecCCCcceeeeeeec---ccEEEEEecCCCcCcEEEEE
Confidence 99999999999999999999999998 99999999999998 999999999999998 77777777655588999999
Q ss_pred EcCCC-CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccc
Q 017773 197 FHPFG-SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV 274 (366)
Q Consensus 197 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 274 (366)
|+|+. ..+|++++.|++|++||+++. +....+.+|++.++.++++ ||..+++|+.||.+.+||++.++.+..+. |.
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~ 233 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AF 233 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CC
Confidence 99984 479999999999999999998 7888999999999999999 99999999999999999999999988876 55
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccc-cCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTA-AGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
..|..++|+ |+...|+.+.. ..|+|||++++..+..+..+.... .........+++|++ ||+.|++|-.|+.|
T Consensus 234 ~~v~sl~fs--pnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~---dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 234 DIVNSLCFS--PNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA---DGQTLFAGYTDNVI 307 (315)
T ss_pred CeEeeEEec--CCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC---CCcEEEeeecCCcE
Confidence 677777777 88777776654 569999999998888776544222 223344567899999 99999999999999
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
++|.+..
T Consensus 308 rv~qv~~ 314 (315)
T KOG0279|consen 308 RVWQVAK 314 (315)
T ss_pred EEEEeec
Confidence 9999753
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.9e-45 Score=276.53 Aligned_cols=284 Identities=20% Similarity=0.311 Sum_probs=249.6
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
+.+|.+.|.++.|++|.++|++++.||.+.|||.-+..... .+. -...-|-.++|+|. |+++|.|
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aip----------l~s~WVMtCA~sPS--g~~VAcG 115 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIP----------LPSSWVMTCAYSPS--GNFVACG 115 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEe----------cCceeEEEEEECCC--CCeEEec
Confidence 34599999999999999999999999999999988755433 111 11246899999999 9999999
Q ss_pred cCCCcEEEEeCCCC------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC
Q 017773 118 DYDGVVMEYDLEKK------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA 191 (366)
Q Consensus 118 ~~dg~i~iw~~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~ 191 (366)
+-|+...||++.+. +..+++.+|.+ -+.++.|.++ .++ ++++.|.+..+||++ +++.+..+. +|.+.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~dD-~~i-lT~SGD~TCalWDie--~g~~~~~f~--GH~gD 188 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLDD-NHI-LTGSGDMTCALWDIE--TGQQTQVFH--GHTGD 188 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccc-eeEEEEEcCC-Cce-EecCCCceEEEEEcc--cceEEEEec--CCccc
Confidence 99999999999855 34567888988 9999999884 455 899999999999999 888888887 89999
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
|.++.++|...+.+++|+.|+..++||+|.+ ..++.|.+|...|+++.|. +|.-|++|+.|++.++||++..+.+..+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 9999999944499999999999999999998 7999999999999999999 9999999999999999999999988888
Q ss_pred ecccc--eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 271 KGHVN--NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 271 ~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
..... +++.++|+ ..|++|++|..|..+.+||.-.++....+ .+|...|.++..+| ||..|++|+
T Consensus 268 s~~~~~~gitSv~FS--~SGRlLfagy~d~~c~vWDtlk~e~vg~L--------~GHeNRvScl~~s~---DG~av~TgS 334 (343)
T KOG0286|consen 268 SHDSIICGITSVAFS--KSGRLLFAGYDDFTCNVWDTLKGERVGVL--------AGHENRVSCLGVSP---DGMAVATGS 334 (343)
T ss_pred ccCcccCCceeEEEc--ccccEEEeeecCCceeEeeccccceEEEe--------eccCCeeEEEEECC---CCcEEEecc
Confidence 75433 45555555 89999999999999999999988888776 68999999999999 999999999
Q ss_pred CCCcEEEEE
Q 017773 349 SDGLLHVFV 357 (366)
Q Consensus 349 ~dg~i~iw~ 357 (366)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.5e-46 Score=295.82 Aligned_cols=268 Identities=20% Similarity=0.378 Sum_probs=240.4
Q ss_pred ccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCC--CCEEEEeecCCeEEEEEceec
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPS--DSVFATGGIARKIRIYNIKSV 74 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~ 74 (366)
.....++..+.++.++..+++++-.+.. +|.+.|.++.|+|. +..+|||+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3445566677777777777776665533 49999999999997 568999999999999999876
Q ss_pred ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCC
Q 017773 75 LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGD 154 (366)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 154 (366)
..+. . +.+|...|..++|+|+ |++|++++.|.+-++||+.++..+....+|.. .|.+++|+++|
T Consensus 252 ~~l~---~----------l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-~v~~iaf~~DG 315 (459)
T KOG0272|consen 252 TPLQ---D----------LEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSK-GVFSIAFQPDG 315 (459)
T ss_pred cchh---h----------hhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhccccc-ccceeEecCCC
Confidence 4443 3 3445578999999999 99999999999999999999999988899998 99999999999
Q ss_pred CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC
Q 017773 155 PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK 234 (366)
Q Consensus 155 ~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 234 (366)
..+ ++|+.|..-+|||++ ++.++..+. +|..+|.+++|+|+| ..+|+|+.|++++|||++.. ..+..+.+|..
T Consensus 316 SL~-~tGGlD~~~RvWDlR--tgr~im~L~--gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~n 388 (459)
T KOG0272|consen 316 SLA-ATGGLDSLGRVWDLR--TGRCIMFLA--GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR-SELYTIPAHSN 388 (459)
T ss_pred cee-eccCccchhheeecc--cCcEEEEec--ccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc-ccceecccccc
Confidence 877 999999999999999 899998888 788999999999999 99999999999999999998 67999999999
Q ss_pred cEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 235 TVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 235 ~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
-|+.+.|+ .|.+|+|++.|+++++|..++..+++++.+|.+.|.++.++ +++.++++++.|.++++|.
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis--~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS--PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec--cCCceEEEeccCceeeecc
Confidence 99999998 78899999999999999999999999999999998888887 9999999999999999995
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=271.18 Aligned_cols=287 Identities=25% Similarity=0.354 Sum_probs=252.6
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+|++.|+.+.|+|+|.+||+|+.|..|.+|++....+.. ..+.+|.+.|..+.|.++ +..++++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------------~~lkgHsgAVM~l~~~~d--~s~i~S~ 108 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------------WVLKGHSGAVMELHGMRD--GSHILSC 108 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------------eeeccccceeEeeeeccC--CCEEEEe
Confidence 45699999999999999999999999999999976543321 123467789999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|.+|+.||.++|+.++.++.|.+ -|.++.-+.-|..++.+++.|+++++||++ +..+++++. .+..++++.|
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R--~k~~~~t~~---~kyqltAv~f 182 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIR--KKEAIKTFE---NKYQLTAVGF 182 (338)
T ss_pred cCCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeec--ccchhhccc---cceeEEEEEe
Confidence 9999999999999999999999998 899998777788898999999999999999 777777775 3448999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC----ceeeeeec
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS----RVIRTYKG 272 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~ 272 (366)
...+ ..+.+|+-|+.|++||++.. .....+.+|..+|+.+..+ +|.++.+-+.|.++++||++-. +++..+.+
T Consensus 183 ~d~s-~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 183 KDTS-DQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred cccc-cceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 9987 78889999999999999988 7899999999999999999 9999999999999999999864 45777776
Q ss_pred c--cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC
Q 017773 273 H--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD 350 (366)
Q Consensus 273 ~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 350 (366)
| .-..+.+.++|+|++..+.+|+.|..+++||......++.+ ++|.+.|++++|+| ...+|.+++.|
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl--------pGh~gsvn~~~Fhp---~e~iils~~sd 329 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL--------PGHYGSVNEVDFHP---TEPIILSCSSD 329 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc--------CCcceeEEEeeecC---CCcEEEEeccC
Confidence 4 44567788888899999999999999999999888877766 78999999999999 55599999999
Q ss_pred CcEEEEE
Q 017773 351 GLLHVFV 357 (366)
Q Consensus 351 g~i~iw~ 357 (366)
.+|++=+
T Consensus 330 k~i~lge 336 (338)
T KOG0265|consen 330 KTIYLGE 336 (338)
T ss_pred ceeEeec
Confidence 9988643
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=291.61 Aligned_cols=285 Identities=21% Similarity=0.350 Sum_probs=249.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-+-+|..|.|.|+|+.|++|+..|.+.+|+...-... ..+..|..+|.++.|+++ +.++++|+.+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-------------tilQaHDs~Vr~m~ws~~--g~wmiSgD~g 159 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-------------TILQAHDSPVRTMKWSHN--GTWMISGDKG 159 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHH-------------HHhhhhcccceeEEEccC--CCEEEEcCCC
Confidence 4668999999999999999999999999997542211 134567789999999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
|.|++|+.+-. .+..++.|+...|++++|+|++..+ +++++||+|+|||.. ..+....+. +|.-.|.+++|+|.
T Consensus 160 G~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF-~t~SdDg~ikiWdf~--~~kee~vL~--GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 160 GMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKF-LTCSDDGTIKIWDFR--MPKEERVLR--GHGWDVKSVDWHPT 233 (464)
T ss_pred ceEEecccchh-hhHHhhHhhhhhhheeccCCCCcee-EEecCCCeEEEEecc--CCchhheec--cCCCCcceeccCCc
Confidence 99999998644 4566667775599999999987776 999999999999998 555555555 77779999999998
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
. .++++|+.|..|++||.+++ .++.++..|+..|..+.|+ ++++|++++.|..++++|+++.+.+.++++|...+..
T Consensus 234 k-gLiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 234 K-GLIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred c-ceeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 7 79999999999999999999 7899999999999999999 8899999999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+.|.+ -...+|.+|+.||.|..|.+...+++..+. .+|...|++++|+| -|..|++|+.|.++++|.-.
T Consensus 312 ~~WhP-~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------~AHd~~iwsl~~hP---lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHP-LNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------PAHDGEIWSLAYHP---LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ecccc-ccccceeeccCCCceEEEeccccccccCCC-------cccccceeeeeccc---cceeEeecCCCcceeeeccC
Confidence 88883 266789999999999999998666665543 67999999999999 67799999999999999753
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-42 Score=281.58 Aligned_cols=308 Identities=23% Similarity=0.342 Sum_probs=264.9
Q ss_pred cccccceeeeeecCCC-ceeeecCCCCcc-----------------------------CCCceEEEEECCCCCEEEEeec
Q 017773 13 ETTNERARCEWDFNLR-TTVSSSSSPNAA-----------------------------VSDSIGVIEFDPSDSVFATGGI 62 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~-~~~~~~~~~~~~-----------------------------h~~~i~~~~~s~~~~~l~t~~~ 62 (366)
.|..++.++.|+|... .++.+..+...+ ....|++++|+.+|.+||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3777888888988766 333333222111 3467999999999999999999
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCC
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGG 142 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 142 (366)
||.++||+....... .+..|.+||.++.|+.. |++|++++.|+++.+||..++.....+..|..
T Consensus 256 ~G~~riw~~~G~l~~--------------tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 256 DGEARIWNKDGNLIS--------------TLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred CcEEEEEecCchhhh--------------hhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 999999998764332 23445689999999999 99999999999999999999999998988886
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM 222 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 222 (366)
+-.++.|-.+. .+ ++++.|+.|+++.+. ...++.++. +|.+.|.++.|+|.| .+|++++.|++++||.....
T Consensus 320 -~~lDVdW~~~~-~F-~ts~td~~i~V~kv~--~~~P~~t~~--GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 320 -PALDVDWQSND-EF-ATSSTDGCIHVCKVG--EDRPVKTFI--GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred -CccceEEecCc-eE-eecCCCceEEEEEec--CCCcceeee--cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCC
Confidence 66788997644 34 899999999999998 778888888 688999999999998 89999999999999998776
Q ss_pred CCCeeEeecccCcEEEEEEc-C---------CCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE
Q 017773 223 VDPVLVFDGHRKTVTYIRFL-D---------VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 223 ~~~~~~~~~~~~~v~~~~~~-~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
.....+.+|...|..+.|+ . +..+++++.|++|++||+..+.++.+|..|..+|..++|+ |+|+++|
T Consensus 392 -~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS--~~g~ylA 468 (524)
T KOG0273|consen 392 -NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS--PNGRYLA 468 (524)
T ss_pred -cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec--CCCcEEE
Confidence 6788899999999999996 2 3579999999999999999999999999999999888888 9999999
Q ss_pred EecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 293 CGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+|+.||.|.+|++++++....+. ..+.|..++|+. +|..|..+-.||.+++-|++
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~---------~~~~Ifel~Wn~---~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQ---------GTGGIFELCWNA---AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCCeeEeccccchheeEeec---------CCCeEEEEEEcC---CCCEEEEEecCCCceEEEec
Confidence 99999999999999999988763 356799999999 77899999999999999875
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=258.39 Aligned_cols=272 Identities=18% Similarity=0.267 Sum_probs=228.5
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-- 132 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-- 132 (366)
-+|++++.|.+||+|...++.+.. +. .|. .+.|+.+...|+ +..||+++ ...|++||++++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r---Ti-qh~---------dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR---TI-QHP---------DSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNPN 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE---EE-ecC---------ccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCCC
Confidence 489999999999999999988765 22 222 256999999999 99999888 5679999999864
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
++.++.+|.+ .|+++.|..+|+.+ ++|++||+++|||++ ...+.+.++ +..+|+++..+|+. .-|++|..+|
T Consensus 75 Pv~t~e~h~k-NVtaVgF~~dgrWM-yTgseDgt~kIWdlR--~~~~qR~~~---~~spVn~vvlhpnQ-teLis~dqsg 146 (311)
T KOG0315|consen 75 PVATFEGHTK-NVTAVGFQCDGRWM-YTGSEDGTVKIWDLR--SLSCQRNYQ---HNSPVNTVVLHPNQ-TELISGDQSG 146 (311)
T ss_pred ceeEEeccCC-ceEEEEEeecCeEE-EecCCCceEEEEecc--Ccccchhcc---CCCCcceEEecCCc-ceEEeecCCC
Confidence 6889999988 99999999999988 999999999999999 555555554 55699999999987 7899999999
Q ss_pred eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC------ceeeeeecccceeeeEEEEEe
Q 017773 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS------RVIRTYKGHVNNRNFVGLSVW 285 (366)
Q Consensus 213 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~ 285 (366)
.|++||+.........+.....+|.++... +|.+++.+...|..++|++-.. +++.+++.|.+.+..+.++
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS-- 224 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS-- 224 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC--
Confidence 999999998633333344455789999998 9999999999999999998654 5777888998876555555
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
|++++|++++.|.+++||+.++. ...+. .+.+|+..++.++||. ||++|++|+.|+.+++|+++.++
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~-~kle~------~l~gh~rWvWdc~FS~---dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF-FKLEL------VLTGHQRWVWDCAFSA---DGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc-eeeEE------EeecCCceEEeeeecc---CccEEEecCCCCceeecccccCc
Confidence 99999999999999999999876 22222 2267899999999999 99999999999999999998755
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.2e-42 Score=260.94 Aligned_cols=277 Identities=23% Similarity=0.325 Sum_probs=243.6
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCcc---------------CCCceEEEEECCCCCEEEEeecCCeEEEEEcee
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNAA---------------VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKS 73 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---------------h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 73 (366)
..+-.|.+++..+.|..+.+.++.++.++.+- ....|..++|+|.|+++|+|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 44667888999999999999999999888543 567899999999999999999999999999986
Q ss_pred cccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC
Q 017773 74 VLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG 153 (366)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~ 153 (366)
.+... ..+..+.+.+|.+.+.|+.|.++ ..|++++.|.+..+||+++++.+..+.+|.+ .|.++.+.|.
T Consensus 129 ~d~~g-------~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~ 197 (343)
T KOG0286|consen 129 RDAEG-------NVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPS 197 (343)
T ss_pred ccccc-------cceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCC
Confidence 43221 12233456778899999999985 5688899999999999999999999999998 9999999994
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-- 231 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-- 231 (366)
....+++|+-|+..++||++ .+.+.+.+. +|...|++++|.|+| .-+++|+.|++.++||+|.. +.+..+..
T Consensus 198 ~~ntFvSg~cD~~aklWD~R--~~~c~qtF~--ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD-~~~a~ys~~~ 271 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVR--SGQCVQTFE--GHESDINSVRFFPSG-DAFATGSDDATCRLYDLRAD-QELAVYSHDS 271 (343)
T ss_pred CCCeEEecccccceeeeecc--CcceeEeec--ccccccceEEEccCC-CeeeecCCCceeEEEeecCC-cEEeeeccCc
Confidence 44445999999999999999 889999988 788899999999999 89999999999999999987 45555542
Q ss_pred ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 232 HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 232 ~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
-..+|++++|+ .|++|++|..|.++.+||.-.++.+..+.+|.+.|.++.++ |||..+++|+.|..++||.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s--~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS--PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC--CCCcEEEecchhHheeecC
Confidence 34689999999 99999999999999999999999999999999999999998 9999999999999999994
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-42 Score=269.90 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=257.8
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+++... . +.+|...+.+++|+.. |++|+++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~----------LrGHt~sv~di~~~a~--Gk~l~tc 168 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---S----------LRGHTDSVFDISFDAS--GKYLATC 168 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---h----------hhccccceeEEEEecC--ccEEEec
Confidence 34599999999999999999999999999999999987744 3 4455567999999998 9999999
Q ss_pred cCCCcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 118 DYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 118 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
+.|-.+++||.++ .+++..+.+|.. .|.+++|.|.|.++ ++++.|.+|+.|++. ++.++.++. +|...|..++
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~i-lS~srD~tik~We~~--tg~cv~t~~--~h~ewvr~v~ 242 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHI-LSCSRDNTIKAWECD--TGYCVKTFP--GHSEWVRMVR 242 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCee-eecccccceeEEecc--cceeEEecc--CchHhEEEEE
Confidence 9999999999987 466777778877 89999999999888 999999999999999 899999998 6777999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-C---------------CCEEEEEeCCCcEEEEe
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D---------------VDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~---------------~~~l~~~~~d~~i~iwd 260 (366)
.+.|| .++++++.|.++++|-+.++ +....++.|+-+|.+++|. . +.++.+++.|++|++||
T Consensus 243 v~~DG-ti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 243 VNQDG-TIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred ecCCe-eEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 99999 89999999999999999987 6778889999999999983 1 25899999999999999
Q ss_pred cCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCC
Q 017773 261 VNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGED 340 (366)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 340 (366)
+.++.++.++.+|.+.|..++|+ |.|+||+++.+|+++++||+++++++..+ ..|..-|+++.|+.+.|
T Consensus 321 v~tg~cL~tL~ghdnwVr~~af~--p~Gkyi~ScaDDktlrvwdl~~~~cmk~~--------~ah~hfvt~lDfh~~~p- 389 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNWVRGVAFS--PGGKYILSCADDKTLRVWDLKNLQCMKTL--------EAHEHFVTSLDFHKTAP- 389 (406)
T ss_pred ccCCeEEEEEecccceeeeeEEc--CCCeEEEEEecCCcEEEEEeccceeeecc--------CCCcceeEEEecCCCCc-
Confidence 99999999999999999999888 99999999999999999999999998877 45788999999998555
Q ss_pred ceEEEEeCCCCcEEEEEe
Q 017773 341 ECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 341 ~~~l~s~~~dg~i~iw~~ 358 (366)
++++|+-|..+++|..
T Consensus 390 --~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 390 --YVVTGSVDQTVKVWEC 405 (406)
T ss_pred --eEEeccccceeeeeec
Confidence 9999999999999975
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-42 Score=274.02 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=244.8
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|.+.|.-+.||++|+|||+++.|.+..||++..........+ +.+|..+|..+.|+|| .++|++++.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t----------lvgh~~~V~yi~wSPD--dryLlaCg~ 289 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT----------LVGHSQPVSYIMWSPD--DRYLLACGF 289 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee----------eecccCceEEEEECCC--CCeEEecCc
Confidence 4999999999999999999999999999999876544332333 4455678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+..+.+||+.+|.....+....+..+.+++|.||+..+ ++|+.|+.+..||+. +......+.. ....|.+++..+
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlD---gn~~~~W~gv-r~~~v~dlait~ 364 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLD---GNILGNWEGV-RDPKVHDLAITY 364 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCC---cchhhccccc-ccceeEEEEEcC
Confidence 99999999999998887766544589999999999998 999999999999998 4444444422 224799999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
|| +.+++.+.|..|++|+..+. .... +.....+|++++.+ +++++++.-.+..+++||++..+.+..+.||...-.
T Consensus 365 Dg-k~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 365 DG-KYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF 441 (519)
T ss_pred CC-cEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce
Confidence 99 67777779999999998875 2222 33345789999999 999999999999999999999999999999987766
Q ss_pred eEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 279 FVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 279 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.+.-+|-- +..++++|++|+.|+||+..+|+++.++ .||...|++++|+|..| .++|++|.||+||||.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--------sGHs~~vNcVswNP~~p--~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--------SGHSKTVNCVSWNPADP--EMFASASDDGTIRIWG 511 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEee--------cCCcceeeEEecCCCCH--HHhhccCCCCeEEEec
Confidence 65555433 5589999999999999999999999887 78999999999999765 6999999999999998
Q ss_pred ecc
Q 017773 358 GKK 360 (366)
Q Consensus 358 ~~~ 360 (366)
...
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 764
No 14
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-40 Score=310.73 Aligned_cols=303 Identities=38% Similarity=0.672 Sum_probs=245.2
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......... .+. +. ....+...+.+++|+|. .+.+|+++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~----~~~-~~-~~~~~~~~v~~l~~~~~-~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD----IHY-PV-VELASRSKLSGICWNSY-IKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc----ccc-ce-EEecccCceeeEEeccC-CCCEEEEE
Confidence 3458999999999999999999999999999997642111100 000 00 01122357999999875 37899999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.||+|++||+.+++.+..+..|.+ .|++++|+|.+..++++|+.|+.|++||++ .+..+..+.. ...+.++.|
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~--~~~~~~~~~~---~~~v~~v~~ 625 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSIN--QGVSIGTIKT---KANICCVQF 625 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECC--CCcEEEEEec---CCCeEEEEE
Confidence 9999999999999998889988887 999999997544445999999999999998 6777777753 247999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC------ceeeeee
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS------RVIRTYK 271 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~ 271 (366)
++..+.++++|+.||.|++||+++...+...+.+|...|.++.|.++.+|++++.|++|++||++.+ .++.++.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 6543489999999999999999987446778889999999999998889999999999999999743 5788899
Q ss_pred cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccc-----ccCCCCceeeEEEeeccCCCceEEEE
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT-----AAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
+|...+..++++ |++.+|++|+.|+.|++|+.....++..+.+.... ....|...|.+++|+| ++..|++
T Consensus 706 gh~~~i~~v~~s--~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~---~~~~lva 780 (793)
T PLN00181 706 GHTNVKNFVGLS--VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG---QSSTLVA 780 (793)
T ss_pred CCCCCeeEEEEc--CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC---CCCeEEE
Confidence 999888888777 89999999999999999998777665544332211 1234667899999999 8889999
Q ss_pred eCCCCcEEEEEe
Q 017773 347 GGSDGLLHVFVG 358 (366)
Q Consensus 347 ~~~dg~i~iw~~ 358 (366)
|+.||.|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 999999999986
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-42 Score=276.59 Aligned_cols=300 Identities=22% Similarity=0.333 Sum_probs=251.9
Q ss_pred ccCCCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCce-eceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 39 AAVSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK-VCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
+.|+.+|.+++|+|-.. .+++|+.|-..++|++..............|.. ....-......|++++|+.+ |..||+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~Lat 252 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTLLAT 252 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCeEEE
Confidence 34999999999999776 899999999999999875111110000011110 00001112357999999999 999999
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
|+.||.+++|+.. +..+.++..|.+ ||.++.|+..|.++ ++++.|+++.+||.. ++...+.+.. |..+-..+.
T Consensus 253 G~~~G~~riw~~~-G~l~~tl~~Hkg-PI~slKWnk~G~yi-lS~~vD~ttilwd~~--~g~~~q~f~~--~s~~~lDVd 325 (524)
T KOG0273|consen 253 GSEDGEARIWNKD-GNLISTLGQHKG-PIFSLKWNKKGTYI-LSGGVDGTTILWDAH--TGTVKQQFEF--HSAPALDVD 325 (524)
T ss_pred eecCcEEEEEecC-chhhhhhhccCC-ceEEEEEcCCCCEE-EeccCCccEEEEecc--CceEEEeeee--ccCCccceE
Confidence 9999999999974 566788888888 99999999999998 999999999999998 7777777774 444557788
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
|-.+ .-+++++.|+.|+++.+... .|+.++.+|.++|.++.|. .+.+|++++.|++++||.+........+.+|..
T Consensus 326 W~~~--~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 326 WQSN--DEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK 402 (524)
T ss_pred EecC--ceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc
Confidence 9876 47899999999999999877 7999999999999999999 899999999999999999999999999999999
Q ss_pred eeeeEEEEEecC---------CCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 276 NRNFVGLSVWRH---------GGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 276 ~~~~~~~~~~~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
.|..+.|+ |. +..+++++.|++|++||+..+.++..+ ..|..+|.+++|+| +|+++|+
T Consensus 403 ei~t~~ws--p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--------~kH~~pVysvafS~---~g~ylAs 469 (524)
T KOG0273|consen 403 EIYTIKWS--PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--------MKHQEPVYSVAFSP---NGRYLAS 469 (524)
T ss_pred ceeeEeec--CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee--------ccCCCceEEEEecC---CCcEEEe
Confidence 98888887 54 457899999999999999999999887 56999999999999 9999999
Q ss_pred eCCCCcEEEEEecccCC
Q 017773 347 GGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 347 ~~~dg~i~iw~~~~~~l 363 (366)
|+.||.|+||+.+.+++
T Consensus 470 Gs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKL 486 (524)
T ss_pred cCCCCeeEeccccchhe
Confidence 99999999999988665
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-42 Score=298.44 Aligned_cols=272 Identities=22% Similarity=0.368 Sum_probs=241.8
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...++|..|++|+.+||.|..|..|++|.+...+... +....+-+ .+=+.+.|-
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~---------------------lk~~~~l~-----~~d~~sad~ 431 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK---------------------LKDASDLS-----NIDTESADV 431 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhcc---------------------ccchhhhc-----cccccccch
Confidence 5668999999999999999999999999998643221 22223322 232444455
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.+.+.|..+.....++.+|.+ +|....|+|+.++| ++++.|+++++|.+. +..++..++ +|..+|..+.|+|.|
T Consensus 432 ~~~~~D~~~~~~~~~L~GH~G-PVyg~sFsPd~rfL-lScSED~svRLWsl~--t~s~~V~y~--GH~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 432 DVDMLDDDSSGTSRTLYGHSG-PVYGCSFSPDRRFL-LSCSEDSSVRLWSLD--TWSCLVIYK--GHLAPVWDVQFAPRG 505 (707)
T ss_pred hhhhccccCCceeEEeecCCC-ceeeeeecccccce-eeccCCcceeeeecc--cceeEEEec--CCCcceeeEEecCCc
Confidence 577888888878888999998 99999999999888 999999999999999 788888888 788899999999998
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
.++|+++.|++.++|..... .+.+.+-+|.+.|.|+.|+ +..++++|+.|.++|+||+.+|..++.|.+|.++|.++
T Consensus 506 -yYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 506 -YYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred -eEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 99999999999999999887 7999999999999999999 99999999999999999999999999999999999998
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+++ |+|++|++|+.||.|.+||+.+++++..+ .+|.+.|.++.|+. ||..||+||.|.+|++||+..
T Consensus 584 ~~S--p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------~~Ht~ti~SlsFS~---dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFS--PCGRYLASGDEDGLIKIWDLANGSLVKQL--------KGHTGTIYSLSFSR---DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEc--CCCceEeecccCCcEEEEEcCCCcchhhh--------hcccCceeEEEEec---CCCEEEecCCCCeEEEEEchh
Confidence 888 99999999999999999999999988665 67899999999999 899999999999999999865
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-41 Score=264.55 Aligned_cols=290 Identities=20% Similarity=0.328 Sum_probs=250.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|.|+++.|.+++|+||+.|++++|||+.+++... ++.+| -..|..+++++. ..||++++.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGh----------i~~vr~vavS~r--HpYlFs~ge 213 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGH----------IETVRGVAVSKR--HPYLFSAGE 213 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecch----------hheeeeeeeccc--CceEEEecC
Confidence 399999999999999999999999999999999987655 44444 457999999998 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|+.|+.||++.++.++.+.+|-. .|.+++.+|.-+.+ ++|+.|.++++||++ +...+..+. +|..+|..+.+.|
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS-~V~~L~lhPTldvl-~t~grDst~RvWDiR--tr~~V~~l~--GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLS-GVYCLDLHPTLDVL-VTGGRDSTIRVWDIR--TRASVHVLS--GHTNPVASVMCQP 287 (460)
T ss_pred CCeeEEEechhhhhHHHhccccc-eeEEEeccccceeE-EecCCcceEEEeeec--ccceEEEec--CCCCcceeEEeec
Confidence 99999999999999999999998 99999999988877 999999999999999 778888887 8888999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
.. ..+++|+.|++|++||++.+ +....+..|+..+.+++.+ ....|++++.| .|+-|++..+..+..+.+|...++
T Consensus 288 ~d-pqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 288 TD-PQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred CC-CceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence 87 68899999999999999998 7888888999999999999 66677777766 499999999999999999999888
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
.++.. +..++++|+++|.+.+||.++|-...........-.-.....|.+.+|.. .|..|++|..|.+|++|.-
T Consensus 365 tl~~n---sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk---tg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 365 TLSVN---SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK---TGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eeeec---cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc---cCceEEeccCCcceEEEec
Confidence 88775 45688899999999999999886654432111000112245689999988 7789999999999999975
Q ss_pred c
Q 017773 359 K 359 (366)
Q Consensus 359 ~ 359 (366)
+
T Consensus 439 D 439 (460)
T KOG0285|consen 439 D 439 (460)
T ss_pred c
Confidence 4
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=251.65 Aligned_cols=275 Identities=16% Similarity=0.228 Sum_probs=224.5
Q ss_pred CCcccccccceeeeeecCCCceeeecC-CCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCc
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSS-SPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
..+.....+..++.|+.......++.. ....+|+..|..++.++||++.++++.|+.+++||+.+++... .
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~---~----- 100 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR---R----- 100 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE---E-----
Confidence 455666778889999987664333221 2334599999999999999999999999999999999875433 3
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC-CCceeeEEeccCC-CceEEEecCCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG-GRRVWSVDYSKGD-PVLGASGSDDG 165 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~i~~~~~~-~~l~~~~~~dg 165 (366)
+.+|...|.+++|+|+ .+.+++|+.|.+|++||.... +..++.... ..-|.|+.|+|+. +.++++++.|+
T Consensus 101 -----f~GH~~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 101 -----FVGHTKDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred -----EEecCCceEEEEecCC--CceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 4455568999999999 999999999999999998655 444444442 4489999999984 44459999999
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCC
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVD 245 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 245 (366)
+|++||++ +.+....+. +|...++.++++||| .++++|+.||.+.+||++.+ +.+..+. |...|.+++|++..
T Consensus 173 tvKvWnl~--~~~l~~~~~--gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~-k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 173 TVKVWNLR--NCQLRTTFI--GHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEG-KNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred eEEEEccC--Ccchhhccc--cccccEEEEEECCCC-CEEecCCCCceEEEEEccCC-ceeEecc-CCCeEeeEEecCCc
Confidence 99999999 566666555 788899999999999 89999999999999999998 5566554 78999999999777
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecc-------cceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 246 TLVTAGTDGCLKLWNVNDSRVIRTYKGH-------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.+.+..+..|+|||+.++..+..++.. ...+.++.++|+++|..|++|..|+.|++|.+.
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7777777888999999999888776531 235678888888999999999999999999875
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.5e-40 Score=244.20 Aligned_cols=292 Identities=20% Similarity=0.314 Sum_probs=244.3
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCce
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
..+....-+.++..|...++........ ..+.|+.+...|++++||+|+. ..||+||+.+.... +..++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh----~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~--- 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH----PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEG--- 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec----CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEec---
Confidence 3344556689999999999998766653 3778999999999999999986 47999999886543 3344444
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
|...|+++.|..+ |+.+++|+.||+++|||+......+.++.. . +|+++..+|+...| ++|..+|.|+
T Consensus 82 -------h~kNVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~qR~~~~~-s-pVn~vvlhpnQteL-is~dqsg~ir 149 (311)
T KOG0315|consen 82 -------HTKNVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-S-PVNTVVLHPNQTEL-ISGDQSGNIR 149 (311)
T ss_pred -------cCCceEEEEEeec--CeEEEecCCCceEEEEeccCcccchhccCC-C-CcceEEecCCcceE-EeecCCCcEE
Confidence 4567999999999 999999999999999999986655555544 3 99999999998888 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-----CCCeeEeecccCcEEEEEEc-
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-----VDPVLVFDGHRKTVTYIRFL- 242 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~- 242 (366)
+||+. ...+...+.+ ....+|.++...|+| .+++++...|..++|++-+. -.++..++.|++.+..+.++
T Consensus 150 vWDl~--~~~c~~~liP-e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 150 VWDLG--ENSCTHELIP-EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred EEEcc--CCccccccCC-CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 99999 5555555543 344699999999999 89999999999999998653 24667788999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccc
Q 017773 243 DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTA 321 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 321 (366)
++++|++++.|.+++||+..+. +....+++|...+...+|+ .||.||++|+.|+.+++|++..++.+...
T Consensus 226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS--~dg~YlvTassd~~~rlW~~~~~k~v~qy------- 296 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS--ADGEYLVTASSDHTARLWDLSAGKEVRQY------- 296 (311)
T ss_pred CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec--cCccEEEecCCCCceeecccccCceeeec-------
Confidence 9999999999999999999988 7777889999888888877 99999999999999999999999988776
Q ss_pred cCCCCceeeEEEee
Q 017773 322 AGSERGFVSSVCWR 335 (366)
Q Consensus 322 ~~~~~~~v~~~~~~ 335 (366)
.+|.....+++..
T Consensus 297 -~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 297 -QGHHKAAVCVALN 309 (311)
T ss_pred -CCcccccEEEEee
Confidence 5666666666653
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=277.35 Aligned_cols=330 Identities=17% Similarity=0.262 Sum_probs=275.4
Q ss_pred CcccccccceeeeeecCCCceeeecCCCC-----------------ccCCCceEEEEECCCCCEEEEeecCCeEEEEEce
Q 017773 10 PQAETTNERARCEWDFNLRTTVSSSSSPN-----------------AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIK 72 (366)
Q Consensus 10 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-----------------~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~ 72 (366)
....+..++..+.|+.+++.++.++.|.. .+|+++|-++-|..+..-+.|.+.||.+.+|...
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 34567789999999999999988776652 3499999999999999999999999999999887
Q ss_pred eccc--cc-----------------ce--eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 73 SVLV--DH-----------------PV--VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 73 ~~~~--~~-----------------~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
.... .. .. ....-......++...+..|++.+|++. .+.|++|-..|...+|.+..-
T Consensus 220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~--t~~lvvgFssG~f~LyelP~f 297 (893)
T KOG0291|consen 220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG--TNLLVVGFSSGEFGLYELPDF 297 (893)
T ss_pred CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCC--ceEEEEEecCCeeEEEecCCc
Confidence 2100 00 00 0000000011122334478999999998 899999999999999999999
Q ss_pred ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC
Q 017773 132 VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 211 (366)
..+..+..... +|..++|+..|..+.+-++.-|.+.+|+.. +...+ ++.++|...+++++++||| +++++|+.|
T Consensus 298 ~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWq--sEsYV--lKQQgH~~~i~~l~YSpDg-q~iaTG~eD 371 (893)
T KOG0291|consen 298 NLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQ--SESYV--LKQQGHSDRITSLAYSPDG-QLIATGAED 371 (893)
T ss_pred eEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEee--cccee--eeccccccceeeEEECCCC-cEEEeccCC
Confidence 99998888766 999999999999995555556899999998 44444 4445888999999999999 899999999
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCe
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (366)
|.|++||.+.+ -+..++..|+..|+.+.|+ .++.+++++.||+|+.||+...+..+++.... ++...+++..|.|.+
T Consensus 372 gKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGel 449 (893)
T KOG0291|consen 372 GKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGEL 449 (893)
T ss_pred CcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCE
Confidence 99999999988 6899999999999999999 99999999999999999999999999998644 666777777799999
Q ss_pred EEEecCCC-eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 291 LGCGSETN-QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 291 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+++|+.|. .|.+|++.+|+.+..+ .||.++|.+++|+| +++.|++++.|.+||+|++-.
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiL--------sGHEgPVs~l~f~~---~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDIL--------SGHEGPVSGLSFSP---DGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehh--------cCCCCcceeeEEcc---ccCeEEeccccceEEEEEeec
Confidence 99999886 5999999999998776 78999999999999 888999999999999999854
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=244.99 Aligned_cols=282 Identities=17% Similarity=0.240 Sum_probs=242.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|+++|.++.|+-||+|.+|++.|.+|++|+...+..++ + +.+|..+|..++.+.+ +..+++|+.|
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---t----------YsghG~EVlD~~~s~D--nskf~s~GgD 80 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---T----------YSGHGHEVLDAALSSD--NSKFASCGGD 80 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceee---e----------ecCCCceeeecccccc--ccccccCCCC
Confidence 79999999999999999999999999999988776655 3 3445568999999998 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
..+.+||+++|+..+.+.+|.. .|+.+.|+.+...+ ++|+.|.++++||.+..+.++++.+. ...+.|.++....
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~a-qVNtV~fNeesSVv-~SgsfD~s~r~wDCRS~s~ePiQild--ea~D~V~Si~v~~- 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLA-QVNTVRFNEESSVV-ASGSFDSSVRLWDCRSRSFEPIQILD--EAKDGVSSIDVAE- 155 (307)
T ss_pred ceEEEEEcccCeeeeecccccc-eeeEEEecCcceEE-EeccccceeEEEEcccCCCCccchhh--hhcCceeEEEecc-
Confidence 9999999999999999999998 99999999877665 99999999999999977778888876 4556899999885
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
..|++|+.||+++.||+|.+ +....+. ..+|+++.|+ +++..++++.|+++++.|-.+++++..+++|.+.-.-
T Consensus 156 --heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 156 --HEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred --cEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 67999999999999999998 4444443 4589999999 9999999999999999999999999999999988888
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce-eeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF-VSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
+..+++.....+++|++||.|++||+..+..+..+. .+... |.+++++|.-+ .|++++. +.+..|.-
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~--------~~~~v~v~dl~~hp~~~---~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS--------VVSTVIVTDLSCHPTMD---DFITATG-HGDLFWYQ 298 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccceeeeeec--------cCCceeEEeeecccCcc---ceeEecC-Cceeceee
Confidence 888887888999999999999999999988887663 34455 89999999543 5666653 44566654
Q ss_pred c
Q 017773 359 K 359 (366)
Q Consensus 359 ~ 359 (366)
+
T Consensus 299 ~ 299 (307)
T KOG0316|consen 299 E 299 (307)
T ss_pred h
Confidence 3
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-39 Score=269.71 Aligned_cols=282 Identities=28% Similarity=0.475 Sum_probs=244.6
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.++|++++|+|++++|++++.||.|++|++.+..... . +..|...+..+.|+|+ ++++++++.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~----------~~~~~~~i~~~~~~~~--~~~l~~~~~ 71 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---T----------LKGHTGPVRDVAASAD--GTYLASGSS 71 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---E----------EecCCcceeEEEECCC--CCEEEEEcC
Confidence 489999999999999999999999999999998754222 2 2334567889999998 889999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+|.|++|++.+++....+..+.. .+.++.|++++..+ ++++.++.+.+||++ +.+....+. .|...+.+++|+|
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~--~~~~~i~~~~~~~ 145 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRIL-SSSSRDKTIKVWDVE--TGKCLTTLR--GHTDWVNSVAFSP 145 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEE-EEecCCCeEEEEECC--CcEEEEEec--cCCCcEEEEEEcC
Confidence 99999999998888888888776 89999999986654 778789999999998 677777766 5667899999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
++ .++++++.++.|++||+++. +....+..|...+.++.|+ +++.+++++.|+.|++||+++++.+..+..|...+.
T Consensus 146 ~~-~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 223 (289)
T cd00200 146 DG-TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223 (289)
T ss_pred cC-CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE
Confidence 86 78888878999999999876 6777888898899999999 777899999999999999999999988888888877
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.+.+. |++.++++++.||.|++||+.++++...+ ..|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 224 ~~~~~--~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 224 SVAFS--PDGYLLASGSEDGTIRVWDLRTGECVQTL--------SGHTNSVTSLAWSP---DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEc--CCCcEEEEEcCCCcEEEEEcCCceeEEEc--------cccCCcEEEEEECC---CCCEEEEecCCCeEEecC
Confidence 77776 88899999988999999999988777665 35778999999999 778999999999999996
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.3e-42 Score=276.93 Aligned_cols=286 Identities=15% Similarity=0.229 Sum_probs=246.6
Q ss_pred cCCCceEEEEECC-CCCEEEEeecCCeEEEEEcee-cccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 40 AVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKS-VLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 40 ~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
+|+..|+++.|.| .+.+|++++.|+.|+||++.. ..+.+ + +.+|..+|.+++|+++ |..++++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---t----------f~gH~k~Vrd~~~s~~--g~~fLS~ 276 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---T----------FKGHRKPVRDASFNNC--GTSFLSA 276 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---h----------hhcchhhhhhhhcccc--CCeeeee
Confidence 4999999999999 889999999999999999987 33332 3 4455578999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|+.|++||.++|+++..+.... .++|+.|+|++..+|++|+.|+.|+.||++ +++.++.+. .|-+.|..+.|
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR--s~kvvqeYd--~hLg~i~~i~F 350 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIR--SGKVVQEYD--RHLGAILDITF 350 (503)
T ss_pred ecceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEecc--chHHHHHHH--hhhhheeeeEE
Confidence 999999999999999998887665 899999999998888999999999999999 888888776 67779999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC---ceeeeeecc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS---RVIRTYKGH 273 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~ 273 (366)
-++| ..+++.+.|+++++|+.+.+.........+.....++..+ ++.+++.-+.|+.|.++.+... ...+.+++|
T Consensus 351 ~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 351 VDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred ccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 9998 7899999999999999998733333333344455677777 8999999999999999987654 344578889
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
...-..+.+.|||||.+|++|+.||.+.+||.++-+.+..+ .+|.+++..+.|+|..+ ..+|+++.||.|
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------kah~~~ci~v~wHP~e~--Skvat~~w~G~I 499 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------KAHDQPCIGVDWHPVEP--SKVATCGWDGLI 499 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------ccCCcceEEEEecCCCc--ceeEecccCcee
Confidence 87777888888899999999999999999999988887666 67899999999999765 589999999999
Q ss_pred EEEE
Q 017773 354 HVFV 357 (366)
Q Consensus 354 ~iw~ 357 (366)
++|+
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9996
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-40 Score=280.27 Aligned_cols=210 Identities=21% Similarity=0.297 Sum_probs=177.1
Q ss_pred ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEE
Q 017773 138 DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 138 ~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 217 (366)
.+|.. .|.++....+| .++++|+.|.++++|.++.+..+....-...+|...|.+++++..+..++++++.|+++++|
T Consensus 362 ~GH~e-~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 362 PGHTE-AVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred eCchh-heeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 34444 66666644445 45599999999999988532333333334458889999999998888999999999999999
Q ss_pred ecCCCC--C--Cee----EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCC
Q 017773 218 DVRKMV--D--PVL----VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 218 d~~~~~--~--~~~----~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (366)
++.... . ... ....|...|++++++ +.++++||+.|.+.++|++...+.+.++.+|...+.++.|+ |..
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs--~~d 517 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS--KND 517 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEec--ccc
Confidence 998621 1 111 335699999999999 88999999999999999999999999999999999999988 999
Q ss_pred CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 289 GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+.++++|.|++|+||.+.+..++.++ .||...|..+.|-. +|..|++++.||.|++|+++++.
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~--------eGH~~aVlra~F~~---~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTF--------EGHTSAVLRASFIR---NGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeee--------cCccceeEeeeeee---CCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999999999999888 68999999999999 88899999999999999998854
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=284.68 Aligned_cols=288 Identities=25% Similarity=0.419 Sum_probs=247.3
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...|.++.|+|+|+++++++.++.+++|+...... ..... +.+|...|.+++|+|+ +.++++++.|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~----------l~~h~~~v~~~~fs~d--~~~l~s~s~D 224 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRE----------LSGHTRGVSDVAFSPD--GSYLLSGSDD 224 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcc----------ccccccceeeeEECCC--CcEEEEecCC
Confidence 588999999999999999999999999999965441 11112 2455678999999999 9999999999
Q ss_pred CcEEEEeC-CCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDL-EKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
++|++||+ ..+..++++.+|.. .|++++|+|+++ ++++|+.|++|++||++ .+++...+. +|.+.|++++|++
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~-~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~--~~~~~~~l~--~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHST-YVTSVAFSPDGN-LLVSGSDDGTVRIWDVR--TGECVRKLK--GHSDGISGLAFSP 298 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCC-ceEEEEecCCCC-EEEEecCCCcEEEEecc--CCeEEEeee--ccCCceEEEEECC
Confidence 99999999 55588899999998 999999999995 55999999999999999 789999988 7778999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCC-CeeEeecccCc--EEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDGHRKT--VTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
++ .++++++.|+.|++||+.++.. +...+..+... ++.+.|+ ++.++++++.|+.+++||++.+..+..+.+|..
T Consensus 299 d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 299 DG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 98 8999999999999999999832 34555555544 9999999 999999999999999999999999999999987
Q ss_pred eeeeE-EEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCC-CceeeEEEeeccCCCceEEEEeC--CCC
Q 017773 276 NRNFV-GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE-RGFVSSVCWRRVGEDECTLVAGG--SDG 351 (366)
Q Consensus 276 ~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~~--~dg 351 (366)
.+.+. ....++.+.++++|+.|+.|++||+.++..+..+ .+| ...+..++++| ...++++++ .|+
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l--------~~h~~~~~~~~~~~~---~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL--------EGHSKAAVSDLSSHP---TENLIASSSFEGDG 446 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh--------cCCCCCceeccccCC---CcCeeeecCcCCCc
Confidence 63222 3334589999999999999999999987776655 567 88899999999 666999998 799
Q ss_pred cEEEEEec
Q 017773 352 LLHVFVGK 359 (366)
Q Consensus 352 ~i~iw~~~ 359 (366)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 99999864
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.6e-39 Score=242.65 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=234.2
Q ss_pred ccCCCceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.+|.+.+..++|+|- |..||+++.|..||||+...+... ...... -.+|...|.+++|+|. |++|++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~----~ck~vl-----d~~hkrsVRsvAwsp~--g~~La~a 79 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW----TCKTVL-----DDGHKRSVRSVAWSPH--GRYLASA 79 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE----EEEEec-----cccchheeeeeeecCC--CcEEEEe
Confidence 358999999999998 899999999999999998752221 111110 1246678999999999 9999999
Q ss_pred cCCCcEEEEeCCCC--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC-CCceeEeecCCCCCCCeEE
Q 017773 118 DYDGVVMEYDLEKK--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD-GGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 118 ~~dg~i~iw~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~~~~~i~~ 194 (366)
+.|.++.||.-..+ +++..+.+|.. .|.+++|+++|.+| |+++.|..|-+|.+... ..++...++ .|...|..
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEn-EVK~Vaws~sG~~L-ATCSRDKSVWiWe~deddEfec~aVL~--~HtqDVK~ 155 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHEN-EVKCVAWSASGNYL-ATCSRDKSVWIWEIDEDDEFECIAVLQ--EHTQDVKH 155 (312)
T ss_pred eccceEEEeecCCCceeEEeeeecccc-ceeEEEEcCCCCEE-EEeeCCCeEEEEEecCCCcEEEEeeec--cccccccE
Confidence 99999999987655 67888999998 99999999999998 99999999999998721 235556665 78889999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCC--CCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKM--VDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
+.|+|.. .+|++++.|++|++|+-... -.++.++.+|...|.+++|+ .|..|++++.|++++||...+.-+ .
T Consensus 156 V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~ 230 (312)
T KOG0645|consen 156 VIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----G 230 (312)
T ss_pred EEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----h
Confidence 9999987 79999999999999987632 24688999999999999999 799999999999999998663211 1
Q ss_pred cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC--ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG--EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
.|...++.+.|. ...|++++.|+.|++|.-... ++...+. ......|...|++++|.|.. ..+|++|+.
T Consensus 231 ~~sr~~Y~v~W~----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~---~~~~~aHe~dVNsV~w~p~~--~~~L~s~~D 301 (312)
T KOG0645|consen 231 MHSRALYDVPWD----NGVIASGGGDDAIRLFKESDSPDEPSWNLL---AKKEGAHEVDVNSVQWNPKV--SNRLASGGD 301 (312)
T ss_pred hcccceEeeeec----ccceEeccCCCEEEEEEecCCCCCchHHHH---HhhhcccccccceEEEcCCC--CCceeecCC
Confidence 255666666664 568999999999999987643 1221111 11236788999999999932 459999999
Q ss_pred CCcEEEEEec
Q 017773 350 DGLLHVFVGK 359 (366)
Q Consensus 350 dg~i~iw~~~ 359 (366)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999975
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-39 Score=262.25 Aligned_cols=291 Identities=23% Similarity=0.305 Sum_probs=235.1
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|..-|+|+.|+|||+++|+++.||++.+||-.+++... .+.. -.+|.+.|.+++|+|| +..+++++.|
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg---~l~~-------~~aHkGsIfalsWsPD--s~~~~T~SaD 256 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG---ELED-------SDAHKGSIFALSWSPD--STQFLTVSAD 256 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE---EecC-------CCCccccEEEEEECCC--CceEEEecCC
Confidence 88899999999999999999999999999998887655 2222 2357789999999999 9999999999
Q ss_pred CcEEEEeCCCCceeE-------------------------------------------eeecCCCCceeeEEeccCCCce
Q 017773 121 GVVMEYDLEKKVPIF-------------------------------------------ERDEHGGRRVWSVDYSKGDPVL 157 (366)
Q Consensus 121 g~i~iw~~~~~~~~~-------------------------------------------~~~~~~~~~v~~i~~~~~~~~l 157 (366)
.+++|||+.+++.+. .+.+|.+ .|++++.+|++.++
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTI 335 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEE
Confidence 999999997765443 3356766 99999999999887
Q ss_pred EEEecCCCcEEEeeCCCCCCc---------eeE--------------------eecCC-----C----------------
Q 017773 158 GASGSDDGTMQMWDPRCDGGK---------CVS--------------------TVQPS-----A---------------- 187 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~~---------~~~--------------------~~~~~-----~---------------- 187 (366)
++|+.||.|.-||....... .+. .+... .
T Consensus 336 -~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 336 -YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred -EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 99999999999998631100 000 00000 0
Q ss_pred ---------------------------CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEE
Q 017773 188 ---------------------------SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYI 239 (366)
Q Consensus 188 ---------------------------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~ 239 (366)
-.....+++++|++ ..+++|+.|+.|++|.+.... ........|.++|+++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 01124578899988 899999999999999998753 3344567799999999
Q ss_pred EEc-CCCEEEEEeCCCcEEEEecCCCceee-eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 240 RFL-DVDTLVTAGTDGCLKLWNVNDSRVIR-TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 240 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+++ ++.+|+++...+.+.+||+.+.+... .+.-|...|.+++|+ |+..++|+|+.|..|.||+++.......++
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs--P~n~~vATGSlDt~Viiysv~kP~~~i~ik-- 569 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS--PNNKLVATGSLDTNVIIYSVKKPAKHIIIK-- 569 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC--CCceEEEeccccceEEEEEccChhhheEec--
Confidence 999 99999999999999999999887633 334488888888887 999999999999999999998654443332
Q ss_pred cccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 318 PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.+|...|+.+.|- |...|++.|.|-.|++|++.
T Consensus 570 -----nAH~~gVn~v~wl----de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 -----NAHLGGVNSVAWL----DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----cccccCceeEEEe----cCceEEeccCcceeEEeccc
Confidence 6788889999998 66789999999999999874
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-39 Score=273.80 Aligned_cols=320 Identities=20% Similarity=0.313 Sum_probs=259.4
Q ss_pred ccceeeeeecCCCceeeecCCCCcc---------------CCCceEEEEECCCCCEEEEeecC-CeEEEEEceecccccc
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAA---------------VSDSIGVIEFDPSDSVFATGGIA-RKIRIYNIKSVLVDHP 79 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~---------------h~~~i~~~~~s~~~~~l~t~~~d-g~i~iw~~~~~~~~~~ 79 (366)
.+.....+++.+..++++...+..+ ...+|..++|+..|..||.|+.. |.+-||+..+.....
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl- 344 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL- 344 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-
Confidence 5566667777777777666655432 35778899999999999998754 789999988754332
Q ss_pred eeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEE
Q 017773 80 VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGA 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 159 (366)
.. .+|...+++++++|| |+++++|+.||+|++||..++-+..++..|+. .|+.+.|+..++.+ +
T Consensus 345 --KQ----------QgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~l-l 408 (893)
T KOG0291|consen 345 --KQ----------QGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVL-L 408 (893)
T ss_pred --ec----------cccccceeeEEECCC--CcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEE-E
Confidence 22 345568999999999 99999999999999999999999999999998 99999999988887 9
Q ss_pred EecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC-eEEEEecCCCCCCeeEeecccCcEEE
Q 017773 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 160 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
+++.||+|+.||+. ..+..+++..+ .+....|++..|.| .++.+|+.|. .|++|+++++ +.+..+.+|.+||.+
T Consensus 409 ssSLDGtVRAwDlk--RYrNfRTft~P-~p~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLK--RYRNFRTFTSP-EPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSG 483 (893)
T ss_pred EeecCCeEEeeeec--ccceeeeecCC-CceeeeEEEEcCCC-CEEEeeccceEEEEEEEeecC-eeeehhcCCCCccee
Confidence 99999999999999 88888888765 34467899999998 7888887775 5999999999 899999999999999
Q ss_pred EEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 239 IRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 239 ~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
++|+ .+..|++++.|.+|++||+-.. ..+.+++ +...+..++| .|+|+.|++++.||.|.+||...+.....++-
T Consensus 484 l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf--rPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF--RPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred eEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE--cCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 9999 9999999999999999998655 3444554 3334444554 49999999999999999999987766543321
Q ss_pred cc------------ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 317 EP------------VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 317 ~~------------~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.. ...........+.+++++ ||.++++||....|.||++.++.|
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa---DG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSA---DGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcC---CCCEEEecCCcccEEEEECchhhe
Confidence 10 011122346789999999 999999999999999999987654
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.5e-41 Score=263.33 Aligned_cols=285 Identities=17% Similarity=0.306 Sum_probs=239.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
....|+|+.+. ...+++|..|++|+|||.++..... .+.+|++.|.|+.|. .+.+++|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~-------------~L~GHtGSVLCLqyd----~rviisGSSD 256 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK-------------ILTGHTGSVLCLQYD----ERVIVSGSSD 256 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH-------------hhhcCCCcEEeeecc----ceEEEecCCC
Confidence 56789999985 4579999999999999998866554 355677899999997 5699999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
.+|++||+++++++.++..|.. .|..+.|+. .++ ++++.|.++.+||+..++....... ..+|...|+.+.|+.
T Consensus 257 sTvrvWDv~tge~l~tlihHce-aVLhlrf~n--g~m-vtcSkDrsiaVWdm~sps~it~rrV-LvGHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 257 STVRVWDVNTGEPLNTLIHHCE-AVLHLRFSN--GYM-VTCSKDRSIAVWDMASPTDITLRRV-LVGHRAAVNVVDFDD- 330 (499)
T ss_pred ceEEEEeccCCchhhHHhhhcc-eeEEEEEeC--CEE-EEecCCceeEEEeccCchHHHHHHH-Hhhhhhheeeecccc-
Confidence 9999999999999999999988 999999973 455 9999999999999984432222221 237888999999985
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
+++++++.|.+|++|++.+. ..++++.+|+..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|..-|.++
T Consensus 331 --kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 331 --KYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred --ceEEEecCCceEEEEeccce-eeehhhhcccccceehhc-cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence 69999999999999999998 799999999999998887 67899999999999999999999999999999999998
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe-cccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD-FEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.|. .+.+++|+.||+|++||+..+....... .-.......|++.|..+.| |...+++++.|.+|.|||..
T Consensus 407 RFd----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-----D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 407 RFD----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-----DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred eec----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-----cceEEEeccCCCeEEEEEcC
Confidence 885 7899999999999999998764331110 0112233568999999999 66789999999999999987
Q ss_pred ccCC
Q 017773 360 KKPL 363 (366)
Q Consensus 360 ~~~l 363 (366)
.++-
T Consensus 478 ~~~~ 481 (499)
T KOG0281|consen 478 NGPP 481 (499)
T ss_pred CCCc
Confidence 7553
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=276.79 Aligned_cols=310 Identities=21% Similarity=0.297 Sum_probs=260.6
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEEC-CCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFD-PSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s-~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
+....+...+.++.++..+.... ++-.+.|..|+|- |+.++||.++..+.+|+|+..+..+.
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~i----vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------- 359 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQI----VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------- 359 (775)
T ss_pred EEEEccceEEEEEccccEEehhh----cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-------------
Confidence 34445666667777776665433 3457889999875 56789999999999999977664432
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEecCCCc
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
.+.+|...|.++..... |.+|++|+.|.++++|.++.+ .++....+|.. .|.+++++..+..+|++++.|++
T Consensus 360 -ii~GH~e~vlSL~~~~~--g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~-svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 360 -IIPGHTEAVLSLDVWSS--GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN-SVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred -EEeCchhheeeeeeccc--CcEEEEecCCceEEEEEecCCcchhhhhhhhccccc-ccceeeecccCccEEEEecCCce
Confidence 46677788999995555 889999999999999988544 34556678887 99999999988888999999999
Q ss_pred EEEeeCCC--CCCceeEee----cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEE
Q 017773 167 MQMWDPRC--DGGKCVSTV----QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 167 v~~~d~~~--~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 240 (366)
+++|++.. ++.. ...+ ....|...|++++++|+. .++|+|+.|.+.++|++... ....++.+|...|.++.
T Consensus 436 lK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 436 LKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVS 512 (775)
T ss_pred EEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCc-eEEEEeeCCccceEEEE
Confidence 99999983 1111 1111 223688899999999997 89999999999999999966 78899999999999999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccc
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
|+ .++.++|++.|++|+||.+.+..++++|.+|...|.-..|. .++..|++++.||.|++|++.++++...+
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~--~~~~qliS~~adGliKlWnikt~eC~~tl----- 585 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI--RNGKQLISAGADGLIKLWNIKTNECEMTL----- 585 (775)
T ss_pred eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee--eCCcEEEeccCCCcEEEEeccchhhhhhh-----
Confidence 99 88899999999999999999999999999999988777777 89999999999999999999999998877
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
.+|...|++++-+| ...++++|+.||.|.+|.=
T Consensus 586 ---D~H~DrvWaL~~~~---~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 586 ---DAHNDRVWALSVSP---LLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ---hhccceeEEEeecC---ccceeEecCCCeEEEEeec
Confidence 67999999999999 7779999999999999963
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-39 Score=269.07 Aligned_cols=281 Identities=18% Similarity=0.312 Sum_probs=247.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+++.|.++.|+|....++++-..|.|.|||.++..... .+ .-...||.+..|-+. .+++++|+.|
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sf----------eV~~~PvRa~kfiaR--knWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SF----------EVSEVPVRAAKFIAR--KNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---ee----------eecccchhhheeeec--cceEEEecCC
Confidence 78899999999999999999999999999999876544 22 122357999999998 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
..|++|+.++++.+..+..|.+ -|.+++.+|..+++ +++++|-.|++||.+ ..-.+.+++. +|.-.|.+++|+|.
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~D-yIR~iavHPt~P~v-LtsSDDm~iKlW~we-~~wa~~qtfe--GH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSD-YIRSIAVHPTLPYV-LTSSDDMTIKLWDWE-NEWACEQTFE--GHEHYVMQVAFNPK 151 (794)
T ss_pred ceEEEEecccceeeEEeecccc-ceeeeeecCCCCeE-EecCCccEEEEeecc-CceeeeeEEc--CcceEEEEEEecCC
Confidence 9999999999999999999998 99999999999988 999999999999998 2345667776 56669999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc---CCCEEEEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
..+.+++++-|++|++|.+... .+..++.+|...|+++.+- +..+|++|+.|.+|++||..+..+++++.+|...|
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 9999999999999999999988 7889999999999999997 44599999999999999999999999999999998
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
..+.+. |.-.++++|++||+++||+..+-+....+.++ ...|++++-.+ ++..++.|...|.|.+
T Consensus 231 s~v~fh--p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------leRvW~I~~~k---~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 231 SFVFFH--PELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------LERVWCIAAHK---GDGKIAVGFDEGSVTV 295 (794)
T ss_pred eEEEec--CCCcEEEEecCCccEEEecCcceehhhhhhcC--------CceEEEEeecC---CCCeEEEeccCCcEEE
Confidence 888777 99999999999999999998887766655443 47899999888 6667888887776643
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=263.01 Aligned_cols=265 Identities=22% Similarity=0.385 Sum_probs=233.7
Q ss_pred ccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccce
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPV 80 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 80 (366)
-.+..+.|.+++++++++...+.. .|..+|+++.|+++|.++++|+.+|.|++|+..-.....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~-- 174 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI-- 174 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH--
Confidence 467788999999999998877643 399999999999999999999999999999976532211
Q ss_pred eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEE
Q 017773 81 VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
... .|...|++++|+|+ ...+++++.||+|+|||....+....+.+|.- .|.+++|+|.-..+ ++
T Consensus 175 --~~a---------hh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-dVksvdWHP~kgLi-as 239 (464)
T KOG0284|consen 175 --IQA---------HHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-DVKSVDWHPTKGLI-AS 239 (464)
T ss_pred --hhH---------hhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCC-CcceeccCCcccee-EE
Confidence 112 23368999999998 88999999999999999999988888888887 89999999976655 99
Q ss_pred ecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEE
Q 017773 161 GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 240 (366)
++.|..|++||.+ ++.++.++. .|+..|..+.|+|++ ++|++++.|..+++||+++. +.+..+++|+..++++.
T Consensus 240 gskDnlVKlWDpr--Sg~cl~tlh--~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 240 GSKDNLVKLWDPR--SGSCLATLH--GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLT 313 (464)
T ss_pred ccCCceeEeecCC--Ccchhhhhh--hccceEEEEEEcCCC-CeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeec
Confidence 9999999999999 899998887 778899999999999 99999999999999999976 78899999999999999
Q ss_pred Ec--CCCEEEEEeCCCcEEEEecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 241 FL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 241 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
|+ ...+|.+|+.||.|..|.+...+++..+. +|...|..+++. |-|.+|++|+.|.++++|.-
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h--PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH--PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc--ccceeEeecCCCcceeeecc
Confidence 98 78899999999999999998667766664 688888887777 99999999999999999975
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=246.16 Aligned_cols=303 Identities=15% Similarity=0.246 Sum_probs=250.7
Q ss_pred ccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeee
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYIC 95 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (366)
++-..+.|+..++..+... .+|++.|+++.|+.+|.+||||+.+|.|+||+..++.... .+...
T Consensus 84 gDD~AflW~~~~ge~~~el----tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e--------- 147 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAGEL----TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQE--------- 147 (399)
T ss_pred CCceEEEEEccCCcceeEe----cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE---Eeecc---------
Confidence 4566677777777655433 3599999999999999999999999999999999876544 22211
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
-..+.-+.|+|. +..|+.|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+++ +++..||+|++||+.
T Consensus 148 -~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~-~tgy~dgti~~Wn~k-- 220 (399)
T KOG0296|consen 148 -VEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRI-LTGYDDGTIIVWNPK-- 220 (399)
T ss_pred -cCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceE-EEEecCceEEEEecC--
Confidence 246888999998 99999999999999999999888888999887 99999999999998 999999999999999
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--------cccCcEEEE---EEc-C
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--------GHRKTVTYI---RFL-D 243 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~v~~~---~~~-~ 243 (366)
+++++..+.... .....++.++..+ ..++.|..++.+++.+..++ +.+.... .+...+.++ .++ .
T Consensus 221 tg~p~~~~~~~e-~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 221 TGQPLHKITQAE-GLELPCISLNLAG-STLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred CCceeEEecccc-cCcCCcccccccc-ceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 888888887543 3467788888887 78889999999888887665 4443333 344444444 444 5
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccC
Q 017773 244 VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
-.+.++|+.||+|.|||+...++.+... |...|..+.|- + ..+|++++.+|.|+.||.++|+....+ .
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~--~-t~~l~t~c~~g~v~~wDaRtG~l~~~y--------~ 365 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL--N-TDYLLTACANGKVRQWDARTGQLKFTY--------T 365 (399)
T ss_pred cchhhcccccceEEEEecccchhheecc-CCCceEEEEEc--C-cchheeeccCceEEeeeccccceEEEE--------e
Confidence 5678999999999999998877665555 76777777776 5 789999999999999999999999887 7
Q ss_pred CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 324 SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 324 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+|...|.+++++| +++++++++.|+..+||++.
T Consensus 366 GH~~~Il~f~ls~---~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 GHQMGILDFALSP---QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCchheeEEEEcC---CCcEEEEecCCCeEEEEecC
Confidence 8999999999999 88899999999999999875
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-38 Score=234.64 Aligned_cols=285 Identities=21% Similarity=0.304 Sum_probs=234.4
Q ss_pred EEEEECCC-CCEEEEee-------cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 46 GVIEFDPS-DSVFATGG-------IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 46 ~~~~~s~~-~~~l~t~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.++.|||- .++||.+. ..|.+.|.++...........+.- ...+..++|++. ..+.++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~-----------~D~LfdV~Wse~-~e~~~~~a 79 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT-----------EDGLFDVAWSEN-HENQVIAA 79 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec-----------ccceeEeeecCC-CcceEEEE
Confidence 67889983 23444332 357899999875444432222222 346999999998 45778888
Q ss_pred cCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 118 DYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 118 ~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
+.||++++||+... .++..++.|.. +|.++.|++..+..+++++.|++|++|+.. ..+.+.++. +|...|...+
T Consensus 80 ~GDGSLrl~d~~~~s~Pi~~~kEH~~-EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~--r~~Sv~Tf~--gh~~~Iy~a~ 154 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMPSKPIHKFKEHKR-EVYSVDWNTVRRRIFLTSSWDGTIKLWDPN--RPNSVQTFN--GHNSCIYQAA 154 (311)
T ss_pred ecCceEEEeccCCCCcchhHHHhhhh-heEEeccccccceeEEeeccCCceEeecCC--CCcceEeec--CCccEEEEEe
Confidence 88999999997543 67888999988 999999999888888999999999999998 677788877 7888999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCC-ceeeeeecc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGH 273 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~ 273 (366)
|+|..++++++++.|+.+++||++...+.+. +..|...+.++.|+ +...++||+.|+.|+.||+++. .++.++.+|
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 9999889999999999999999999865555 88999999999998 8889999999999999999986 688899999
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
.-.|+.+.++++ ...+|++++.|-+++|||...+...... ...|+.-|..+.|++.. +.++|+++.|+.+
T Consensus 234 ~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~~~ds~~e~-------~~~HtEFv~g~Dws~~~--~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 234 GLAVRKVKFSPH-HASLLASASYDMTVRIWDPERQDSAIET-------VDHHTEFVCGLDWSLFD--PGQVASTGWDELL 303 (311)
T ss_pred ceEEEEEecCcc-hhhHhhhccccceEEecccccchhhhhh-------hhccceEEecccccccc--Cceeeecccccce
Confidence 999999999842 4568999999999999999855433221 14588999999999964 4699999999999
Q ss_pred EEEEe
Q 017773 354 HVFVG 358 (366)
Q Consensus 354 ~iw~~ 358 (366)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=249.45 Aligned_cols=251 Identities=19% Similarity=0.290 Sum_probs=227.9
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
.+.+|..+|+.+-|+|+ -..+++++.|++|++||..+++....+++|.+ .|.++.|+..|+++ ++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~a~Gk~l-~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFDASGKYL-ATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccC--ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEecCccEE-EecCCccchhhee
Confidence 35567789999999998 88999999999999999999999999999999 79999999999887 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
... ..++++.+. +|.-.|.+++|-|.| .++++++.|.+|+.|++.++ ..+.++.+|...|..++.+ +|.+++++
T Consensus 179 ~~~-~~~c~ks~~--gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDT-FFRCIKSLI--GHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHH-HHHHHHHhc--CcccceeeEEEEecC-CeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCeeEEEec
Confidence 982 256666666 455599999999998 89999999999999999998 7999999999999999999 99999999
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEe---c----------CCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVW---R----------HGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+.|.++++|-+.++++...++.|..++.+++|.+- | .+.++.+++.|++|++||+.++.++.++
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--- 330 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--- 330 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---
Confidence 99999999999999999999999999999998721 0 1369999999999999999999999887
Q ss_pred cccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 318 PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+|...|.+++|+| .|+||+++.+|+++++||++.+.
T Consensus 331 -----~ghdnwVr~~af~p---~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 331 -----VGHDNWVRGVAFSP---GGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred -----ecccceeeeeEEcC---CCeEEEEEecCCcEEEEEeccce
Confidence 78999999999999 99999999999999999998743
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-38 Score=245.53 Aligned_cols=249 Identities=20% Similarity=0.326 Sum_probs=226.5
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
..+.+.+|.+-|.|+++.|. +++|++|+.|++++|||+.+++...++.+|.. .|..+++++-.+++ ++++.|+.|+
T Consensus 143 l~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYl-Fs~gedk~VK 218 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYL-FSAGEDKQVK 218 (460)
T ss_pred ehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceE-EEecCCCeeE
Confidence 34567899999999999998 99999999999999999999999999999988 99999999999998 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 247 (366)
.||++ ..+.++.+. +|-..|.|++.+|.- ..|++|+.|..+++||+|+. ..+..+.+|..+|..+.+. -+..+
T Consensus 219 CwDLe--~nkvIR~Yh--GHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 219 CWDLE--YNKVIRHYH--GHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred EEech--hhhhHHHhc--cccceeEEEeccccc-eeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCce
Confidence 99999 778887776 788899999999987 89999999999999999998 6899999999999999997 56679
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCc
Q 017773 248 VTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERG 327 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
++|+.|++|++||++.++...++..|...+.++++. |....+|+++.| .|+-|++..|..+..+ .+|+.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh--P~e~~fASas~d-nik~w~~p~g~f~~nl--------sgh~~ 361 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH--PKENLFASASPD-NIKQWKLPEGEFLQNL--------SGHNA 361 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecC--CchhhhhccCCc-cceeccCCccchhhcc--------ccccc
Confidence 999999999999999999999999998888877777 999999999887 5999999998877654 67899
Q ss_pred eeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 328 FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 328 ~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
-|++++.+. |+ ++++|+++|.+.+||-+.+.
T Consensus 362 iintl~~ns---D~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 362 IINTLSVNS---DG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred eeeeeeecc---Cc-eEEEcCCceEEEEEecCcCc
Confidence 999999986 54 88999999999999987753
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.5e-38 Score=268.04 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=192.1
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
.+.+|.++|+...|+|+ .++|++++.|+++++|.+.+...+..+++|.. ||+++.|+|.|-++ |+++.|++.++|.
T Consensus 446 ~L~GH~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-PVwdV~F~P~GyYF-atas~D~tArLWs 521 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-PVWDVQFAPRGYYF-ATASHDQTARLWS 521 (707)
T ss_pred EeecCCCceeeeeeccc--ccceeeccCCcceeeeecccceeEEEecCCCc-ceeeEEecCCceEE-EecCCCceeeeee
Confidence 46778899999999999 99999999999999999999999999999988 99999999987776 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
.. ...+.+.+. +|...|.|+.|+|+. .++++|+.|.+|++||+.++ ..++.+.+|.++|.+++|+ +|.+|++|
T Consensus 522 ~d--~~~PlRifa--ghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 522 TD--HNKPLRIFA--GHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred cc--cCCchhhhc--ccccccceEEECCcc-cccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeec
Confidence 98 677888777 788899999999997 89999999999999999998 7899999999999999999 99999999
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+.||.|.+||+.+++++.++.+|.+.+..+.|+ .+|..||+|+.|++|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS--~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS--RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEe--cCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999888888877 9999999999999999999864
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-36 Score=227.45 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=240.0
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+|+.+++.+.|+.+|.+|.+++.|.+..+|-..+++.+. + +.+|.+.|.|+....+ .+.+++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---t----------y~GHtGavW~~Did~~--s~~liTG 70 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---T----------YDGHTGAVWCCDIDWD--SKHLITG 70 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---e----------ecCCCceEEEEEecCC--cceeeec
Confidence 34599999999999999999999999999999877766554 3 4456688999999998 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec----CCCcEEEeeCCCCC-----CceeEeecCCCC
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS----DDGTMQMWDPRCDG-----GKCVSTVQPSAS 188 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----~dg~v~~~d~~~~~-----~~~~~~~~~~~~ 188 (366)
+.|.++++||+++|+++..++... +|..+.|+++|.+++++.. ..+.|.++|++..+ .++...+.. +
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~ 146 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--P 146 (327)
T ss_pred cccceeEEEEcCCCcEEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--C
Confidence 999999999999999999998776 8999999999988755432 34679999998432 334555553 4
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCcee
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
...++.+-|.|.+ ..|++|..||.|.+||++++.+.+...+.|...|+.|+++ +..+|++++.|.+-++||+++.+.+
T Consensus 147 ~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 147 DSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred ccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 4699999999998 8999999999999999999877888888899999999999 9999999999999999999999999
Q ss_pred eeeecccceeeeEEEEEecCCCeEEEecCCCeEEEE--EeecCceEEEE----ecccccccCCCCceeeEEEeeccCCCc
Q 017773 268 RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVY--DVRWGEPVWVH----DFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
+++.. ..++++.+++ |....++.|+.....-+= +.+.|+-...+ -.+......+|-++|++++|+| +|
T Consensus 226 Kty~t-e~PvN~aais--P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP---dG 299 (327)
T KOG0643|consen 226 KTYTT-ERPVNTAAIS--PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP---DG 299 (327)
T ss_pred EEeee-cccccceecc--cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC---CC
Confidence 99985 4478888888 877777766543322221 12222211110 0112234588999999999999 99
Q ss_pred eEEEEeCCCCcEEEEEecc
Q 017773 342 CTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 342 ~~l~s~~~dg~i~iw~~~~ 360 (366)
+..++|++||.|++.-.+.
T Consensus 300 ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCCCCceEEEEEecc
Confidence 9999999999999986654
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-35 Score=242.56 Aligned_cols=289 Identities=19% Similarity=0.278 Sum_probs=238.9
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|..+++-..|+|.|-|+|+|...|+|||||....+... +. .+..-.++|..++|+++ ++++++.+.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Kn------ef~v~aG~I~Di~Wd~d--s~RI~avGE 123 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KN------EFQVLAGPIKDISWDFD--SKRIAAVGE 123 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----ee------eeeecccccccceeCCC--CcEEEEEec
Confidence 399999999999999999999999999999987632211 11 12222468999999999 888877653
Q ss_pred --CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 120 --DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 120 --dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.-.+++-.+++..+.++.+|.. .|.++.|-|..++-+++|++|+.|.+|+-. ..+....+. .|...|+|+.|
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr-~ins~~~KpsRPfRi~T~sdDn~v~ffeGP--PFKFk~s~r--~HskFV~~VRy 198 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSR-RINSVDFKPSRPFRIATGSDDNTVAFFEGP--PFKFKSSFR--EHSKFVNCVRY 198 (603)
T ss_pred CccceeEEEEecCCCccceeeccce-eEeeeeccCCCceEEEeccCCCeEEEeeCC--Ceeeeeccc--ccccceeeEEE
Confidence 23334444457888899999998 999999999999999999999999999855 444444444 77889999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
+|+| .++++.+.||++++||-.++ +.+..+. +|++.|.+++|+ ++..|++++.|.+++|||+.+.+++.++...
T Consensus 199 sPDG-~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDG-SRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCC-CeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 9998 89999999999999999998 6777776 899999999999 9999999999999999999999999998754
Q ss_pred cc-eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 274 VN-NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 274 ~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
.. .-..+.+-| + ...|++.+.+|.|.+++.....++..+ .+|...|++++.+| |+.+|++|+.||.
T Consensus 277 ~~v~dqqvG~lW-q-kd~lItVSl~G~in~ln~~d~~~~~~i--------~GHnK~ITaLtv~~---d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 277 STVEDQQVGCLW-Q-KDHLITVSLSGTINYLNPSDPSVLKVI--------SGHNKSITALTVSP---DGKTIYSGSYDGH 343 (603)
T ss_pred CchhceEEEEEE-e-CCeEEEEEcCcEEEEecccCCChhhee--------cccccceeEEEEcC---CCCEEEeeccCce
Confidence 32 112233333 3 778899999999999999988866655 78999999999999 8889999999999
Q ss_pred EEEEEeccc
Q 017773 353 LHVFVGKKK 361 (366)
Q Consensus 353 i~iw~~~~~ 361 (366)
|.-|+...+
T Consensus 344 I~~W~~~~g 352 (603)
T KOG0318|consen 344 INSWDSGSG 352 (603)
T ss_pred EEEEecCCc
Confidence 999998764
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=259.21 Aligned_cols=289 Identities=18% Similarity=0.282 Sum_probs=252.0
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|...|.++++|.+...+++|+ .+.++||+..+.++.. ++.. +.+.+..|.|. ++++++|.
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciR---Ti~~------------~y~l~~~Fvpg--d~~Iv~G~ 431 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIR---TITC------------GYILASKFVPG--DRYIVLGT 431 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeE---Eecc------------ccEEEEEecCC--CceEEEec
Confidence 45999999999999998888876 5689999999887765 2222 24889999998 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC---CCceeEeecCC-----CCCC
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD---GGKCVSTVQPS-----ASRS 190 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~---~~~~~~~~~~~-----~~~~ 190 (366)
..|.+.++|+.+...+.+++.|.+ .|++++.+|++..+ ++|+.|.+|++||...- .+...+.++.. .-..
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAHDG-AIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred cCCceEEEEeehhhhhhhhhcccc-ceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999999999999999999988 99999999999998 99999999999998621 11111111111 2245
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeee
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT 269 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 269 (366)
.|.|++++|+| ++++++--|++|++|-+++. +....+.+|.-||.+|..+ +++.++||+.|..|++|-+.=|.+-+.
T Consensus 510 dvL~v~~Spdg-k~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 510 DVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred cEEEEEEcCCC-cEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 89999999999 89999999999999999998 7888899999999999999 999999999999999999999999999
Q ss_pred eecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
+.+|...|.++.|. |+...+.+++.|+.|+-||-..-+.+..+ .+|...|++++.+| +|.++++++.
T Consensus 588 ~fAHdDSvm~V~F~--P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--------~~H~~ev~cLav~~---~G~~vvs~sh 654 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFL--PKTHLFFTCGKDGKVKQWDGEKFEEIQKL--------DGHHSEVWCLAVSP---NGSFVVSSSH 654 (888)
T ss_pred hhcccCceeEEEEc--ccceeEEEecCcceEEeechhhhhhheee--------ccchheeeeeEEcC---CCCeEEeccC
Confidence 99999999888888 99999999999999999998887777666 67999999999999 8889999999
Q ss_pred CCcEEEEEecccC
Q 017773 350 DGLLHVFVGKKKP 362 (366)
Q Consensus 350 dg~i~iw~~~~~~ 362 (366)
|.+|++|......
T Consensus 655 D~sIRlwE~tde~ 667 (888)
T KOG0306|consen 655 DKSIRLWERTDEI 667 (888)
T ss_pred CceeEeeeccCcc
Confidence 9999999876543
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-36 Score=235.62 Aligned_cols=290 Identities=17% Similarity=0.284 Sum_probs=242.1
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
..|+++|.+++.+|+.+++|||+.|..-.+|++.++.... .+. +|...|+++.|+.+ |.+||+|.
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---elt----------gHKDSVt~~~Fshd--gtlLATGd 125 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELT----------GHKDSVTCCSFSHD--GTLLATGD 125 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---Eec----------CCCCceEEEEEccC--ceEEEecC
Confidence 3599999999999999999999999999999999887544 444 44568999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
-+|.|+||+..++.....+..... .+.-+.|+|.+..| +.|+.||.+-+|.+. ++...+.+. +|..++++=.|.
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~-dieWl~WHp~a~il-lAG~~DGsvWmw~ip--~~~~~kv~~--Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVE-DIEWLKWHPRAHIL-LAGSTDGSVWMWQIP--SQALCKVMS--GHNSPCTCGEFI 199 (399)
T ss_pred CCccEEEEEcccCceEEEeecccC-ceEEEEecccccEE-EeecCCCcEEEEECC--CcceeeEec--CCCCCccccccc
Confidence 999999999999988888765444 78899999977766 999999999999998 556667776 688899999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec----
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG---- 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---- 272 (366)
|+| +.++++..||+|++||+.++ +++..+.. ......++.++ .+..++.|..++.+++-+..+++.+....+
T Consensus 200 pdG-Kr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 200 PDG-KRILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred CCC-ceEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 998 89999999999999999998 66666652 34467788888 888999999999999999888887776662
Q ss_pred ----ccceeeeEEEE-EecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 273 ----HVNNRNFVGLS-VWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 273 ----~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
+...+.++.+. ++..-.+.|+|+-||+|.|||+...++..... |...|..+.|-+ .+ +|+++
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---------he~~V~~l~w~~-t~---~l~t~ 344 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---------HEDGVTKLKWLN-TD---YLLTA 344 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---------CCCceEEEEEcC-cc---hheee
Confidence 33334444333 22566788999999999999999887766543 778899999987 43 89999
Q ss_pred CCCCcEEEEEecccCCC
Q 017773 348 GSDGLLHVFVGKKKPLS 364 (366)
Q Consensus 348 ~~dg~i~iw~~~~~~l~ 364 (366)
+.||.|+.||.+++.+.
T Consensus 345 c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLK 361 (399)
T ss_pred ccCceEEeeeccccceE
Confidence 99999999999987653
No 42
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=236.31 Aligned_cols=300 Identities=18% Similarity=0.273 Sum_probs=238.4
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccc-----eeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHP-----VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|+.++.+.+|+|||.++|||+.|-.|+|.|++....... ......+....+.+..|..+|+++.|+|. ...|+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e~ILi 188 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--ETILI 188 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--hheEE
Confidence 999999999999999999999999999999983211110 00111223455677789999999999999 99999
Q ss_pred EEcCCCcEEEEeCCCCceeE---eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-CCCCCCC
Q 017773 116 SGDYDGVVMEYDLEKKVPIF---ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ-PSASRSA 191 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~ 191 (366)
+|+.|++|+++|+.+....+ .++... +|.++.|+|.|.++ +.|.+-..+++||+. +.++...-. ...|.+.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefl-lvgTdHp~~rlYdv~--T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFL-LVGTDHPTLRLYDVN--TYQCFVSANPDDQHTGA 263 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceE-EEecCCCceeEEecc--ceeEeeecCcccccccc
Confidence 99999999999998653322 233333 89999999999988 889999999999999 666655443 3478899
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-ccc-CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceee
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-GHR-KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIR 268 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~-~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 268 (366)
|+++.+++.+ ++.++|+.||.|++||--+. +++.++. .|. ..|.+..|. +++++++++.|..+++|++.+++++.
T Consensus 264 i~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 264 ITQVRYSSTG-SLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred eeEEEecCCc-cEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999999998 89999999999999998776 5666553 454 468888898 99999999999999999999999999
Q ss_pred eeeccc---ceeeeEEEEEecCCCeEEEecC-CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEE
Q 017773 269 TYKGHV---NNRNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL 344 (366)
Q Consensus 269 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 344 (366)
++.+.. .........|+....+++.-.+ .+.+.-||.+++.....+. .+|++.+..+.-+|..| -+
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-------lgHn~a~R~i~HSP~~p---~F 411 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-------LGHNGAVRWIVHSPVEP---AF 411 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-------cCCCCCceEEEeCCCCC---ce
Confidence 998641 1122222334466666665543 5789999999988776554 56899999999999555 99
Q ss_pred EEeCCCCcEEEEEec
Q 017773 345 VAGGSDGLLHVFVGK 359 (366)
Q Consensus 345 ~s~~~dg~i~iw~~~ 359 (366)
++|+.|-.+|+|--+
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 999999999999654
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-37 Score=257.44 Aligned_cols=250 Identities=20% Similarity=0.262 Sum_probs=230.5
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
..++..|.++.|+|. ...++++-.+|.|.|||.++...+..+..... ||.+..|-+.-+.+ ++|++|..|++|+..
T Consensus 10 ~~rSdRVKsVd~HPt--ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfiaRknWi-v~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPT--EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFIARKNWI-VTGSDDMQIRVFNYN 85 (794)
T ss_pred hccCCceeeeecCCC--CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheeeeccceE-EEecCCceEEEEecc
Confidence 345678999999999 99999999999999999999999999988887 99999999876666 999999999999999
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEe
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAG 251 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~ 251 (366)
+++.+..+. .|.+.|++++.+|.. .++++++.|-.|++||.++.-.+.+++.+|...|++++|+ |.+.|++++
T Consensus 86 --t~ekV~~Fe--AH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 86 --TGEKVKTFE--AHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred --cceeeEEee--ccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 889999988 788899999999997 7999999999999999999888899999999999999998 888999999
Q ss_pred CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeE
Q 017773 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSS 331 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 331 (366)
.|++|++|.+.+..+..++++|...|+++.+-.-+|..+|++|++|..|+|||..+..++.++ .+|...|..
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------eGHt~Nvs~ 232 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--------EGHTNNVSF 232 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh--------hcccccceE
Confidence 999999999999999999999999999999985556789999999999999999999888776 689999999
Q ss_pred EEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 332 VCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 332 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
+.|+|.-| .+++|++||++|||+..+-++
T Consensus 233 v~fhp~lp---iiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 233 VFFHPELP---IIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred EEecCCCc---EEEEecCCccEEEecCcceeh
Confidence 99999666 999999999999999877544
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=245.13 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=229.3
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCC------------------ccCCCceEEEEECCCCCEEEEeecCCeEEEEE
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPN------------------AAVSDSIGVIEFDPSDSVFATGGIARKIRIYN 70 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------------------~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~ 70 (366)
+.+..|++++..+.|+.++.++++++.+.. .+|..+|..+.||||.+||++++.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 677889999999999999999999888763 34999999999999999999999999999999
Q ss_pred ceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEe
Q 017773 71 IKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDY 150 (366)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~ 150 (366)
+.++........ ++.-.+.+++|.|| |..+++|+.|+.+..||++... ....++.....|.+++.
T Consensus 298 v~tgd~~~~y~~------------~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 298 VDTGDLRHLYPS------------GLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred CCcchhhhhccc------------CcCCCcceeEEccC--CceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEE
Confidence 999876552211 12346899999999 9999999999999999997543 44444544448999999
Q ss_pred ccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee
Q 017773 151 SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 151 ~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
.+||+++ ++.+.|..+++++.+ .......+. ...+|+++..+.++ +++++--.+..+++||+... +.++.+.
T Consensus 363 t~Dgk~v-l~v~~d~~i~l~~~e--~~~dr~lis---e~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~-~lv~kY~ 434 (519)
T KOG0293|consen 363 TYDGKYV-LLVTVDKKIRLYNRE--ARVDRGLIS---EEQPITSFSISKDG-KLALVNLQDQEIHLWDLEEN-KLVRKYF 434 (519)
T ss_pred cCCCcEE-EEEecccceeeechh--hhhhhcccc---ccCceeEEEEcCCC-cEEEEEcccCeeEEeecchh-hHHHHhh
Confidence 9999999 666689999999988 444443333 23499999999998 78888889999999999966 7888888
Q ss_pred cccCc--EEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 231 GHRKT--VTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 231 ~~~~~--v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+|+.. +-.-+|- +..++++|+.|+.|+||+..+++++.++.||...|+++++.+ .+..++|++++||+|+||...
T Consensus 435 Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP-~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 435 GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP-ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC-CCHHHhhccCCCCeEEEecCC
Confidence 88764 3334554 668999999999999999999999999999999999999883 366789999999999999865
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=230.67 Aligned_cols=252 Identities=22% Similarity=0.365 Sum_probs=215.9
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
+...+.+|++.|+.+.|+|+ |.+|++|+.|..|.+|+... .+....+++|.+ .|..+.|.+++..+ ++++.|.++
T Consensus 39 p~m~l~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~~d~s~i-~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGMRDGSHI-LSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCC--CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeeccCCCEE-EEecCCceE
Confidence 34456788899999999998 99999999999999999643 455667788888 99999999999998 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
+.||.+ +++..+.++ .|...++++.-..-|..++.+|+.|+++++||+|+. ..++++. .+.+++++.|. .+..
T Consensus 115 ~~wD~~--tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 115 RGWDAE--TGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQ 188 (338)
T ss_pred EEEecc--cceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccc
Confidence 999999 899998888 677799999977778789999999999999999987 5666554 46789999999 8889
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce----EEEEeccccccc
Q 017773 247 LVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP----VWVHDFEPVTAA 322 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~ 322 (366)
+++|+-|+.|++||++.......+.+|..+|+.+..+ |+|.++.+-+.|.++++||++...+ +..+. .
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls--~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g----- 260 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS--RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-G----- 260 (338)
T ss_pred eeeccccCceeeeccccCcceEEeecccCceeeEEec--cCCCccccccccceEEEEEecccCCCCceEEEee-c-----
Confidence 9999999999999999999999999999999888888 9999999999999999999985332 33331 1
Q ss_pred CCCC--ceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 323 GSER--GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 323 ~~~~--~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
..|. .....++|+| ++..+.+|+.|..+++||....
T Consensus 261 ~~hnfeknlL~cswsp---~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSP---NGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred chhhhhhhcceeeccC---CCCccccccccceEEEeecccc
Confidence 1122 2356788999 8889999999999999998763
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=221.04 Aligned_cols=285 Identities=17% Similarity=0.251 Sum_probs=243.1
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|...|.+++|+.+|..||+|+.|+++++|+++...... .....+|.+.|-.++|+|. ...++++++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-----------~~~~~gh~~svdql~w~~~-~~d~~atas 84 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-----------ELVYRGHTDSVDQLCWDPK-HPDLFATAS 84 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-----------hhcccCCCcchhhheeCCC-CCcceEEec
Confidence 3589999999999999999999999999999998763322 1124567778999999987 478999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.|.+|++||...++++.......+ . .-+.|+|+|.++ +.++.|..|.+.|.+ +.+.....+.. ..+..++|+
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~e-n-i~i~wsp~g~~~-~~~~kdD~it~id~r--~~~~~~~~~~~---~e~ne~~w~ 156 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGE-N-INITWSPDGEYI-AVGNKDDRITFIDAR--TYKIVNEEQFK---FEVNEISWN 156 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCc-c-eEEEEcCCCCEE-EEecCcccEEEEEec--ccceeehhccc---ceeeeeeec
Confidence 999999999999999888766553 3 468899999998 889999999999999 66666665533 377888998
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
-++ .+++.....|.|.|...... +++..++.|.....|+.|+ +|++|++|+.|..+.+||+...-+++.+..+.-+|
T Consensus 157 ~~n-d~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 157 NSN-DLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred CCC-CEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence 666 67666667899999999877 8999999999999999999 99999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC-------
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD------- 350 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d------- 350 (366)
+.++|+ .+|++||+|++|..|-|=++++|..+..+. +.++...++|+|..+ +||-++.|
T Consensus 235 RTlSFS--~dg~~lASaSEDh~IDIA~vetGd~~~eI~---------~~~~t~tVAWHPk~~---LLAyA~ddk~~d~~r 300 (313)
T KOG1407|consen 235 RTLSFS--HDGRMLASASEDHFIDIAEVETGDRVWEIP---------CEGPTFTVAWHPKRP---LLAYACDDKDGDSNR 300 (313)
T ss_pred EEEEec--cCcceeeccCccceEEeEecccCCeEEEee---------ccCCceeEEecCCCc---eeeEEecCCCCcccc
Confidence 888877 999999999999999999999999998875 678999999999554 88877654
Q ss_pred --CcEEEEEec
Q 017773 351 --GLLHVFVGK 359 (366)
Q Consensus 351 --g~i~iw~~~ 359 (366)
|.+++|-+.
T Consensus 301 eag~vKiFG~~ 311 (313)
T KOG1407|consen 301 EAGTVKIFGLS 311 (313)
T ss_pred ccceeEEecCC
Confidence 567777554
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-37 Score=228.97 Aligned_cols=284 Identities=15% Similarity=0.184 Sum_probs=237.2
Q ss_pred cCCCceEEEEECC---CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 40 AVSDSIGVIEFDP---SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 40 ~h~~~i~~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
+|..+|-.++||| +|-+|++++.||.-.+-+-+++.-.. ++.+| .+.|.+...+.+ ..+.++
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfegh----------kgavw~~~l~~n--a~~aas 76 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGH----------KGAVWSATLNKN--ATRAAS 76 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeecc----------CcceeeeecCch--hhhhhh
Confidence 4999999999996 78899999999987766666655444 44444 578999999988 888999
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
++.|-+-++||.-++..+..+...+ -|.+++|+.+..+| ++|+.+..+++||++.+ ..+...+. +|.+.|..+.
T Consensus 77 aaadftakvw~a~tgdelhsf~hkh--ivk~~af~~ds~~l-ltgg~ekllrvfdln~p-~App~E~~--ghtg~Ir~v~ 150 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKH--IVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRP-KAPPKEIS--GHTGGIRTVL 150 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhh--eeeeEEecccchhh-hccchHHHhhhhhccCC-CCCchhhc--CCCCcceeEE
Confidence 9999999999999999888876544 89999999999998 99999999999999833 23334444 7888999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
|.... +.++++..|++|++||.+++ ..++++. .+.+|+++.++ +|.+ ++....+.|.+||..+..+++.++...
T Consensus 151 wc~eD-~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs~k~P~- 225 (334)
T KOG0278|consen 151 WCHED-KCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKSYKMPC- 225 (334)
T ss_pred EeccC-ceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCE-EEEecCceeEEeccccccceeeccCcc-
Confidence 99876 78888899999999999998 6777765 56789999999 6655 555567789999999999998887533
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
.|...++. |+...+++|++|..++.||..+++.+..+. .+|.++|.++.|+| ||...++|++||+|++
T Consensus 226 nV~SASL~--P~k~~fVaGged~~~~kfDy~TgeEi~~~n-------kgh~gpVhcVrFSP---dGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 226 NVESASLH--PKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-------KGHFGPVHCVRFSP---DGELYASGSEDGTIRL 293 (334)
T ss_pred cccccccc--CCCceEEecCcceEEEEEeccCCceeeecc-------cCCCCceEEEEECC---CCceeeccCCCceEEE
Confidence 44555555 999999999999999999999999887642 78999999999999 8889999999999999
Q ss_pred EEeccc
Q 017773 356 FVGKKK 361 (366)
Q Consensus 356 w~~~~~ 361 (366)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 997653
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.2e-36 Score=235.87 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=229.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC-CCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG-TSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~ 119 (366)
|.+.|.++... ++.+++|++||.+++|+...... ..+.+|.++|.+++|... .....|++++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~--------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI--------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceE--------------EEEecCCcceeeeEEEecCCccceEEEecC
Confidence 88889988887 67999999999999999765321 134567789998888643 22346999999
Q ss_pred CCcEEEEeCCCCce----eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-------------------
Q 017773 120 DGVVMEYDLEKKVP----IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG------------------- 176 (366)
Q Consensus 120 dg~i~iw~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~------------------- 176 (366)
|.++++|..+.+.. +....+|.. .|.++...+++..+ ++|+.|..|++|+.....
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~-~V~sVsv~~sgtr~-~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKR-SVDSVSVDSSGTRF-CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhccccc-ceeEEEecCCCCeE-EeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 99999999987643 233447777 99999999999887 999999999999933100
Q ss_pred ----CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 177 ----GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 177 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
..++.. ..+|..+|.++.|++. ..+++++.|.+|+.||+.++ .....+. .+..++++..+ ..++|++|+
T Consensus 246 ~~~~r~P~vt--l~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg-~~~~~~~-~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 246 EGGTRTPLVT--LEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETG-GLKSTLT-TNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred cccccCceEE--ecccccceeeEEEcCC--CceEeecccceEEEEEeecc-cceeeee-cCcceeEeecccccceeeecC
Confidence 112222 3489999999999994 58999999999999999998 4555555 35678999998 888999999
Q ss_pred CCCcEEEEecCCC---ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc-eEEEEecccccccCCCCc
Q 017773 252 TDGCLKLWNVNDS---RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE-PVWVHDFEPVTAAGSERG 327 (366)
Q Consensus 252 ~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 327 (366)
.|..|++||.+++ -..++|.+|.+.|..+.+++ .+...|++|+.|+++++||+++.+ +++.+ .+|..
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~k~plydI--------~~h~D 390 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------AGHND 390 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccCCCcceee--------ccCCc
Confidence 9999999999987 45678899999999888883 255678899999999999999877 77776 67899
Q ss_pred eeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 328 FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 328 ~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.|.++.|+ ++..+++||.|.+|+|+.-.
T Consensus 391 Kvl~vdW~----~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 391 KVLSVDWN----EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEecc----CCceEEeccCcceEEEeccc
Confidence 99999998 66799999999999999754
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-36 Score=221.91 Aligned_cols=247 Identities=19% Similarity=0.303 Sum_probs=218.4
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
.+.++.++|..+.|+-+ |++.++++.|.+|++|++..+..+.++.+|.. .|..++.+.++..+ ++|+.|..+.+||
T Consensus 12 ~l~~~qgaV~avryN~d--GnY~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s~Dnskf-~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVD--GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALSSDNSKF-ASCGGDKAVQVWD 87 (307)
T ss_pred eecccccceEEEEEccC--CCEEEEcCCCceEEeecccccceeeeecCCCc-eeeecccccccccc-ccCCCCceEEEEE
Confidence 45677889999999999 99999999999999999999999999999988 99999999999888 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-CCCeeEeecccCcEEEEEEcCCCEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDGHRKTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 250 (366)
+. +++..+.+. +|.+.|+.++|+.+. ..+++|+.|.++++||.|.. .+|++.+......|.++... +..+++|
T Consensus 88 V~--TGkv~Rr~r--gH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaG 161 (307)
T KOG0316|consen 88 VN--TGKVDRRFR--GHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAG 161 (307)
T ss_pred cc--cCeeeeecc--cccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEee
Confidence 99 899999998 788899999999987 89999999999999999875 36788888888899998885 5689999
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCcee-
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFV- 329 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v- 329 (366)
+.||+++.||++.++...-+-+| +|++++++ ++++.+.+++.|++|++.|-.+|+.+..+ .+|...-
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s--~d~nc~La~~l~stlrLlDk~tGklL~sY--------kGhkn~ey 229 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFS--KDGNCSLASSLDSTLRLLDKETGKLLKSY--------KGHKNMEY 229 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEec--CCCCEEEEeeccceeeecccchhHHHHHh--------ccccccee
Confidence 99999999999999988888777 77888887 99999999999999999999999988766 5565543
Q ss_pred -eEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 330 -SSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 330 -~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
...+++. ....+++|++||.|++||+....+
T Consensus 230 kldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 230 KLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eeeeeecc---cceeEEeccCCceEEEEEecccee
Confidence 3445554 556899999999999999976543
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=235.38 Aligned_cols=290 Identities=16% Similarity=0.284 Sum_probs=244.4
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
.+..+-|..|||||+||++|+.||.|.+||..+++...... . .....+--+..+|.|+.|+.+ ...|++|+.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-Y----QAqd~fMMmd~aVlci~FSRD--sEMlAsGsqD 284 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-Y----QAQDNFMMMDDAVLCISFSRD--SEMLASGSQD 284 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-h----hhhcceeecccceEEEeeccc--HHHhhccCcC
Confidence 56778899999999999999999999999999887654111 1 111234456678999999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeee-cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERD-EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|.|++|.+.+|.+++.+. .|.. .|+++.|+.++..+ ++++.|.++++.-+. ++++++.+. +|...|+...|.+
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtk-Gvt~l~FSrD~Sqi-LS~sfD~tvRiHGlK--SGK~LKEfr--GHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTK-GVTCLSFSRDNSQI-LSASFDQTVRIHGLK--SGKCLKEFR--GHSSYVNEATFTD 358 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhcc-CeeEEEEccCcchh-hcccccceEEEeccc--cchhHHHhc--CccccccceEEcC
Confidence 999999999999999998 5555 99999999999998 999999999999999 999999998 7888999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecc-c
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH-V 274 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~ 274 (366)
+| ..+++++.||+|++|+.++. .++.+++. ...+|+.+-.- +...++.+...++|.+.++. |+.++++... .
T Consensus 359 dG-~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 359 DG-HHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred CC-CeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 99 89999999999999999987 67666654 34567777664 77889999999999999974 6777777532 2
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
..-..++...+|.|.++.+.++|+.++.|.+.+|+....+. -|...|.+++-+| ..+.||+-++||.++
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHP---HqNllAsYsEDgllK 504 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHP---HQNLLASYSEDGLLK 504 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCc---ccchhhhhcccchhh
Confidence 22234555566999999999999999999999999887763 4778889999999 666999999999999
Q ss_pred EEE
Q 017773 355 VFV 357 (366)
Q Consensus 355 iw~ 357 (366)
+|.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 995
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=256.04 Aligned_cols=283 Identities=21% Similarity=0.342 Sum_probs=245.7
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
+..|..++|+|....++++-..|.|++||..-+.... .+..|.++|..++|+|. ..++++|+.|.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-------------rFdeHdGpVRgv~FH~~--qplFVSGGDDy 73 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-------------RFDEHDGPVRGVDFHPT--QPLFVSGGDDY 73 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHh-------------hhhccCCccceeeecCC--CCeEEecCCcc
Confidence 6779999999999999999999999999998876655 24456789999999999 99999999999
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|++|+..+.+++.++.+|-+ -|..+.|++.-+.+ +++++|.+|+||+.. +.+++..+.. |.-.|.|..|+|..
T Consensus 74 kIkVWnYk~rrclftL~GHlD-YVRt~~FHheyPWI-lSASDDQTIrIWNwq--sr~~iavltG--HnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLD-YVRTVFFHHEYPWI-LSASDDQTIRIWNWQ--SRKCIAVLTG--HNHYVMCAQFHPTE 147 (1202)
T ss_pred EEEEEecccceehhhhccccc-eeEEeeccCCCceE-EEccCCCeEEEEecc--CCceEEEEec--CceEEEeeccCCcc
Confidence 999999999999999999998 99999999988887 999999999999999 8999999994 55599999999986
Q ss_pred CcEEEEEecCCeEEEEecCCCCC----------------------------CeeEeecccCcEEEEEEc-CCCEEEEEeC
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVD----------------------------PVLVFDGHRKTVTYIRFL-DVDTLVTAGT 252 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 252 (366)
.++++++-|.+|++||+....+ ....+.+|...|+-++|+ .-.++++|+.
T Consensus 148 -DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 148 -DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred -ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 7999999999999999853100 123567899999999999 6789999999
Q ss_pred CCcEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 253 DGCLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 253 d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
|..|++|.+...+ .+.+..+|.++|.++-|. |...++++.++|++|+|||+...+.+..+.. ..+.-+
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh--p~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------endRFW 296 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH--PHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------ENDRFW 296 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCcceEEec--CccceeEecCCCccEEEEecccccceeeeec--------cCCeEE
Confidence 9999999997653 456778999999888877 8899999999999999999999998888743 357889
Q ss_pred EEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 331 SVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.++-+| ..+++++| .|+-+.+|.++.
T Consensus 297 ~laahP---~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 297 ILAAHP---ELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred EEEecC---Ccceeeee-cCCceEEEEEcc
Confidence 999999 66677766 555577898875
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=256.66 Aligned_cols=255 Identities=22% Similarity=0.297 Sum_probs=207.8
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccc--------------------------------c---------
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVD--------------------------------H--------- 78 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--------------------------------~--------- 78 (366)
.|.+.|.++.||+||+|||+||.||.|+||.+...+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999999999999999998761000 0
Q ss_pred ------ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEecc
Q 017773 79 ------PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK 152 (366)
Q Consensus 79 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~ 152 (366)
....+.-..++...+.+|.+.|..+.|+. .++|++++.|.+|++|++....++..+. |.+ -|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd-fVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS-HND-FVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe-cCC-eeEEEEecc
Confidence 00111122334456789999999999998 6799999999999999999988888874 454 899999999
Q ss_pred CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-
Q 017773 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG- 231 (366)
Q Consensus 153 ~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~- 231 (366)
.+..+|++|+.||.++||++. ..+.+.-... ...|++++|.|+| +..++|+.+|.+++|+.+.. +......-
T Consensus 420 vDDryFiSGSLD~KvRiWsI~--d~~Vv~W~Dl---~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~l-k~~~~~~I~ 492 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSIS--DKKVVDWNDL---RDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGL-KLVSDFHIR 492 (712)
T ss_pred cCCCcEeecccccceEEeecC--cCeeEeehhh---hhhheeEEeccCC-ceEEEEEeccEEEEEEccCC-eEEEeeeEe
Confidence 887777999999999999998 4444444433 3599999999998 89999999999999999876 33333211
Q ss_pred -c------cCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEE
Q 017773 232 -H------RKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302 (366)
Q Consensus 232 -~------~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 302 (366)
| ...|+.+.|. +.+.+++.+.|..|||||.++..++..|++....-..+..+|+.||++|+++++|..|++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 1 2379999997 555688888999999999999999999998776666677777799999999999999999
Q ss_pred EEee
Q 017773 303 YDVR 306 (366)
Q Consensus 303 wd~~ 306 (366)
|+..
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9973
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=242.65 Aligned_cols=231 Identities=23% Similarity=0.358 Sum_probs=206.8
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..|+|+.+. ...+++|..|.+|++||.++..+...+.+|.+ .|.|+.|.. + ++++|+.|.+|++||.+ ++
T Consensus 198 kgVYClQYD----D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd~--r-viisGSSDsTvrvWDv~--tg 267 (499)
T KOG0281|consen 198 KGVYCLQYD----DEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYDE--R-VIVSGSSDSTVRVWDVN--TG 267 (499)
T ss_pred CceEEEEec----chhhhcccccCceEEeccccHHHHHhhhcCCC-cEEeeeccc--e-EEEecCCCceEEEEecc--CC
Confidence 469999997 45899999999999999999999999999999 999999963 3 66999999999999999 89
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC--CCeeEeecccCcEEEEEEcCCCEEEEEeCCCc
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--DPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGC 255 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 255 (366)
+++.++. .|...|..+.|+. .++++++.|.++.+||+.... ...+.+.+|...|+.+.|+ .+++++++.|.+
T Consensus 268 e~l~tli--hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRT 341 (499)
T KOG0281|consen 268 EPLNTLI--HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRT 341 (499)
T ss_pred chhhHHh--hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-cceEEEecCCce
Confidence 9999887 7888999999985 589999999999999998763 2345678999999999995 469999999999
Q ss_pred EEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 256 LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
|++|++.+++.+.++.+|...+.+++. .++++++|+.|.+|++||+..|.++..+ .||..-|.++.|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~G~cLRvL--------eGHEeLvRciRF- 408 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVL--------EGHEELVRCIRF- 408 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhc----cCeEEEecCCCceEEEEeccccHHHHHH--------hchHHhhhheee-
Confidence 999999999999999999998877765 4999999999999999999999998776 689999999999
Q ss_pred ccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
|.+.+++|+.||+|+|||+...
T Consensus 409 ----d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 409 ----DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ----cCceeeeccccceEEEEecccc
Confidence 5679999999999999998753
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.9e-35 Score=255.15 Aligned_cols=244 Identities=26% Similarity=0.421 Sum_probs=213.8
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC 174 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~ 174 (366)
...|.++.|+++ |+.+++++.++.+++|+....+ ....+.+|.. .|.+++|+|++.++ ++++.|++|++||+.
T Consensus 159 ~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs~d~~~l-~s~s~D~tiriwd~~- 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFSPDGSYL-LSGSDDKTLRIWDLK- 233 (456)
T ss_pred cCceEEEEEcCC--CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEECCCCcEE-EEecCCceEEEeecc-
Confidence 568999999999 9999999999999999997777 6677777777 99999999999977 999999999999994
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCC
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTD 253 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 253 (366)
..+..++.+. +|...|++++|+|++ +++++|+.|++|++||++++ ++...+.+|...|++++|+ ++.+|++++.|
T Consensus 234 ~~~~~~~~l~--gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 234 DDGRNLKTLK--GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred CCCeEEEEec--CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 2567888888 888999999999999 99999999999999999996 8999999999999999999 99999999999
Q ss_pred CcEEEEecCCCc--eeeeeecccce--eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCc--
Q 017773 254 GCLKLWNVNDSR--VIRTYKGHVNN--RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERG-- 327 (366)
Q Consensus 254 ~~i~iwd~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-- 327 (366)
+.|++||+.++. ++..+..+... +..++++ |++.++++++.|+.+++||+..+.....+. +|..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~--------~~~~~~ 379 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS--PNGKYLLSASLDRTLKLWDLRSGKSVGTYT--------GHSNLV 379 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEEC--CCCcEEEEecCCCeEEEEEccCCcceeeec--------ccCCcc
Confidence 999999999998 56777776655 5666666 999999999999999999999998887763 3443
Q ss_pred -eeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 328 -FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 328 -~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+.+...++ .+.++++|+.|+.|++|++.++.
T Consensus 380 ~~~~~~~~~~---~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 380 RCIFSPTLST---GGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred eeEecccccC---CCCeEEEEeCCceEEEEeCCccc
Confidence 344444455 88899999999999999998643
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-35 Score=237.03 Aligned_cols=281 Identities=23% Similarity=0.369 Sum_probs=234.9
Q ss_pred CCCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
..++|.+++|+|... -+|+++ .-.+.||+..+..... .+.... ..|+++.|..| |++|++|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k---~~srFk----------~~v~s~~fR~D--G~LlaaGD~ 88 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK---TFSRFK----------DVVYSVDFRSD--GRLLAAGDE 88 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh---hHHhhc----------cceeEEEeecC--CeEEEccCC
Confidence 467899999999653 244444 3479999988765544 222222 35999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
.|.|+++|..+...+..+..|+. +|..+.|+|++..++++|++|+.+++||+. +... .....+|++.|.|.+|+|
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s--~a~v--~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLS--TAYV--QAELSGHTDYVRCGDISP 163 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcC--CcEE--EEEecCCcceeEeecccc
Confidence 99999999777677788889988 999999999999999999999999999998 4443 445558999999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeeccccee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNR 277 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~ 277 (366)
..+.++++|+.||.|++||++.....+..+. |..+|..+.+- +|..+++++ ...|++||+.+| +.+..+..|...|
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE
Confidence 8878999999999999999998755555554 89999999998 778888877 467999999966 5555566699999
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
+|+.+. .++..|++|+-|+.+++||+.+-+.+..+.+ .++|.+++.+| |++.++.|..||.+.+=+
T Consensus 242 TcL~l~--s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~---dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 242 TCLRLA--SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSP---DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEEee--cCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecC---CCceEEEecccceeeeeh
Confidence 999998 8999999999999999999988888887765 57899999999 888999999999887664
Q ss_pred e
Q 017773 358 G 358 (366)
Q Consensus 358 ~ 358 (366)
.
T Consensus 308 ~ 308 (487)
T KOG0310|consen 308 R 308 (487)
T ss_pred h
Confidence 3
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=215.70 Aligned_cols=287 Identities=20% Similarity=0.241 Sum_probs=233.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC-
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY- 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~- 119 (366)
-.+.|+++.|+++|.+|++++.|..++|||..+++... ....+ .-.+..++|... ...++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~sk----------kyG~~~~~Fth~--~~~~i~sStk 77 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSK----------KYGVDLACFTHH--SNTVIHSSTK 77 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---Eeecc----------cccccEEEEecC--CceEEEccCC
Confidence 36789999999999999999999999999999887655 22222 135777888776 556666655
Q ss_pred -CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 -DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 -dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
|.+|+..++.+++.++.+.+|.. .|.+++.+|-+..+ ++++.|++|++||++ ..++...+... .-...+|+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR--~~~cqg~l~~~----~~pi~AfD 149 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTF-LSSSLDKTVRLWDLR--VKKCQGLLNLS----GRPIAAFD 149 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeE-EecccCCeEEeeEec--CCCCceEEecC----CCcceeEC
Confidence 88999999999999999999999 99999999988776 999999999999999 66777666544 33457999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCC-CCCeeEeec---ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDG---HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~---~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
|.| -++|++...+.|++||+|.. ..|...+.. .....+.|.|+ +|++++.+...+.+.+.|.-+|..+.++..+
T Consensus 150 p~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 150 PEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 998 88888888889999999976 335555543 36778999999 9999999999999999999999999999877
Q ss_pred ccee-eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 274 VNNR-NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 274 ~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
...- .-+..+++||++++++|+.||+|.+|+++++..+..+. ..+.+++.++.|+| .-.+++++ +..
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~-------~~~~~~~~~~~fnP---~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR-------GPNGGPVSCVRFNP---RYAMFVSA--SSN 296 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec-------CCCCCCccccccCC---ceeeeeec--Cce
Confidence 6442 12555677999999999999999999999999988774 22688899999999 54466655 566
Q ss_pred EEEEEecccCC
Q 017773 353 LHVFVGKKKPL 363 (366)
Q Consensus 353 i~iw~~~~~~l 363 (366)
+-+|=.....+
T Consensus 297 l~fw~p~~~~~ 307 (311)
T KOG1446|consen 297 LVFWLPDEDAL 307 (311)
T ss_pred EEEEecccccc
Confidence 88887665443
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=8.9e-35 Score=238.35 Aligned_cols=296 Identities=19% Similarity=0.276 Sum_probs=230.4
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+|+..|.++++.|.|..|++|+.|-+|++||+......... +. ....+-...|.+++|++. |..|++.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr------~l~P~E~h~i~sl~ys~T--g~~iLvv 232 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FR------QLQPCETHQINSLQYSVT--GDQILVV 232 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--hh------ccCcccccccceeeecCC--CCeEEEE
Confidence 3358999999999999999999999999999999875432210 00 011122346999999999 8888888
Q ss_pred cCCCcEEEEeCCCCceeE------------eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-
Q 017773 118 DYDGVVMEYDLEKKVPIF------------ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ- 184 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~------------~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~- 184 (366)
+.....+++|-+...... ..++|.. .++|.+|+|..+..|++++.||++++||+.. ..+....++
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~ 310 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKT 310 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCC-chhheeEEee
Confidence 888899999976543322 2345665 8999999999998889999999999999983 223333333
Q ss_pred --CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC--CCeeEeecccC--cEEEEEEc-CCCEEEEEeCCCcEE
Q 017773 185 --PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--DPVLVFDGHRK--TVTYIRFL-DVDTLVTAGTDGCLK 257 (366)
Q Consensus 185 --~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~ 257 (366)
..+..-++++++|+|+| .+||+|+.||+|.+|+.+... .....-.+|.. .|+++.|+ +|++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 23455689999999999 789999999999999986542 12334456877 89999999 999999999999999
Q ss_pred EEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecC------CCeEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 258 LWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE------TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 258 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
+||++.. +++....+-...-....++|+|+.++|++|.. .|.+.+||..+-+.++.+.+. ...|.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--------~aSvv 461 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--------TASVV 461 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------CceEE
Confidence 9999986 66666665444434444556699999999864 578999999999888887653 57799
Q ss_pred EEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 331 SVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.+.|+| .=+.|+.|+.||.+++|=
T Consensus 462 ~~~Whp---kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 462 RCLWHP---KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEeecc---hhhheeeecCCCceEEEE
Confidence 999999 666889999999999984
No 58
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.1e-33 Score=245.52 Aligned_cols=279 Identities=15% Similarity=0.135 Sum_probs=208.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEec-CCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKP-GTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~ 119 (366)
|-..|+....++++..+++++.+.....|+...+..................+.+|.+.|.+++|+| + +++|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d--~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD--PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC--CCEEEEEeC
Confidence 4455677777788777777777777888876554221100000000111234678999999999999 6 889999999
Q ss_pred CCcEEEEeCCCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 120 DGVVMEYDLEKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 120 dg~i~iw~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
|++|++||+.++ .++..+.+|.. .|.+++|+|++..++++++.|+.|++||++ +++....+. .|...|
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~--tg~~~~~l~--~h~~~V 171 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFHPSAMNVLASAGADMVVNVWDVE--RGKAVEVIK--CHSDQI 171 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeCcCCCCEEEEEeCCCEEEEEECC--CCeEEEEEc--CCCCce
Confidence 999999999764 34667788887 999999999876566999999999999999 677777765 677799
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc-EEEEEEc-CCCEEEEEe----CCCcEEEEecCCCc-
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT-VTYIRFL-DVDTLVTAG----TDGCLKLWNVNDSR- 265 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~l~~~~----~d~~i~iwd~~~~~- 265 (366)
.+++|+|+| .+|++++.|+.|++||++++ +.+..+.+|.+. ...+.|. ++..+++++ .|+.|++||+++..
T Consensus 172 ~sla~spdG-~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNLDG-SLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEECCC-CEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999999998 89999999999999999987 677788888765 3456677 666776654 47899999998764
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEEec-CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
++.....+.... .....+++++++|++++ .|+.|++||+.++++.....+ .+..++.+++|.|
T Consensus 250 p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-------~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-------SSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-------cCCCCCcceEecc
Confidence 444433333222 22233459999999887 599999999999987766542 2456788888888
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=213.99 Aligned_cols=246 Identities=22% Similarity=0.349 Sum_probs=207.2
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC---ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK---VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
.+.+|.+.+..++|+|. .|..||+++.|..|++|+...+ .+...+...+.+.|++++|+|.|++| ++++.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~L-a~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPG-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYL-ASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccC-CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEE-EEeeccceEE
Confidence 45567788999999995 2569999999999999999853 23334444444599999999999987 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC--CCCeeEeecccCcEEEEEEc-CCC
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM--VDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
||.-.....+++..++ +|...|.|++|+++| ++||+++.|++|-||.+... ......+.+|...|..+.|+ ...
T Consensus 87 Iw~k~~~efecv~~lE--GHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLE--GHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EeecCCCceeEEeeee--ccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9998755567777777 888899999999999 89999999999999999843 34677889999999999999 778
Q ss_pred EEEEEeCCCcEEEEecC---CCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccccc
Q 017773 246 TLVTAGTDGCLKLWNVN---DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
+|++++.|++|++|+-. ..+++.++.+|...+.+++|. +.|..|+++++|++++||...+.-+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~--~~G~rl~s~sdD~tv~Iw~~~~~~~------------ 229 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD--NIGSRLVSCSDDGTVSIWRLYTDLS------------ 229 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec--CCCceEEEecCCcceEeeeeccCcc------------
Confidence 99999999999999876 347899999999888877777 9999999999999999999763211
Q ss_pred CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 323 GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 323 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
.-|+..+..++|.. ..|++++.|+.|++|.-...
T Consensus 230 ~~~sr~~Y~v~W~~-----~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 230 GMHSRALYDVPWDN-----GVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred hhcccceEeeeecc-----cceEeccCCCEEEEEEecCC
Confidence 34788999999971 28999999999999987653
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.3e-34 Score=248.60 Aligned_cols=279 Identities=19% Similarity=0.310 Sum_probs=241.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+...+.+..|. +.++++++.+++|++|+..++.... . .+.+|.+.|.++++... +.+|++|+.|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~---~---------~l~GH~g~V~~l~~~~~--~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL---T---------RLVGHFGGVWGLAFPSG--GDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE---e---------eccCCCCCceeEEEecC--CCEEEEEecC
Confidence 57778888888 5589999999999999998765533 2 14456689999999986 8899999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
.++++||..++++...+.+|.. .|.++...+ .++++|+.|.+|++|++. ++..+..+. +|.++|+++..+
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~s-tv~~~~~~~---~~~~sgs~D~tVkVW~v~--n~~~l~l~~--~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTS-SVRCLTIDP---FLLVSGSRDNTVKVWDVT--NGACLNLLR--GHTGPVNCVQLD-- 340 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCc-eEEEEEccC---ceEeeccCCceEEEEecc--CcceEEEec--cccccEEEEEec--
Confidence 9999999999999999999998 888888753 344889999999999999 888888887 488899999998
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 279 (366)
+ .++++|+.|++|.+||+.+. +++..+.+|...|+++.+.....+++|+.|++|++||+++. +++.++.+|..-+..
T Consensus 341 ~-~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 341 E-PLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred C-CEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 69999999999999999987 89999999999999998753289999999999999999999 999999999887754
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+. ..+++|++++.|+.|++||..+++++..+.- .|.+.|..+++. ...+++++.||.+++||++
T Consensus 419 l~----~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-------~~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 419 LL----LRDNFLVSSSADGTIKLWDAEEGECLRTLEG-------RHVGGVSALALG-----KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred cc----cccceeEeccccccEEEeecccCceeeeecc-------CCcccEEEeecC-----cceEEEEecCCeeEEEecc
Confidence 44 4589999999999999999999999988742 156788888875 1378899999999999998
Q ss_pred ccCC
Q 017773 360 KKPL 363 (366)
Q Consensus 360 ~~~l 363 (366)
.+.+
T Consensus 483 ~~~~ 486 (537)
T KOG0274|consen 483 SGTL 486 (537)
T ss_pred cCch
Confidence 8654
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=235.29 Aligned_cols=284 Identities=19% Similarity=0.290 Sum_probs=238.4
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.-.|.+.+..+.|-++...|++|+.|..|++|++...+.. ....+.+..++|+++.|.++ +..++++
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----------~~~tLaGs~g~it~~d~d~~--~~~~iAa 237 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----------LISTLAGSLGNITSIDFDSD--NKHVIAA 237 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----------hhhhhhccCCCcceeeecCC--CceEEee
Confidence 3349999999999999889999999999999998765421 11234444578999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|+.+++|++...+...++.+|.+ .|+++.|......+ ++|+.|.+|++||+. ...+.+++.... .+..+..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtd-kVt~ak~~~~~~~v-Vsgs~DRtiK~WDl~--k~~C~kt~l~~S---~cnDI~~ 310 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTD-KVTAAKFKLSHSRV-VSGSADRTIKLWDLQ--KAYCSKTVLPGS---QCNDIVC 310 (459)
T ss_pred cCCCceeeeeccchhhhhhhccccc-ceeeehhhccccce-eeccccchhhhhhhh--hhheeccccccc---cccceEe
Confidence 9999999999999999999999998 99999998876665 999999999999999 778887776443 5666666
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccc--
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-- 274 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 274 (366)
++ ..+++|..|++|++||.+.. .+......+. .|+++..+ ++..+++++.|.++.+.|+++.+....+....
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred cc---eeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc
Confidence 63 68899999999999999998 6777777654 89999999 99999999999999999999998888776422
Q ss_pred --ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 275 --NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 275 --~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
...+.+.| ||++.|+++|+.||.|+||++.+++....+.... ....|++++|+| .|..|++++.++.
T Consensus 386 ~asDwtrvvf--Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~------s~~aI~s~~W~~---sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 386 CASDWTRVVF--SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST------SNAAITSLSWNP---SGSGLLSADKQKA 454 (459)
T ss_pred cccccceeEE--CCCCceeeeccCCCcEEEEEccCceEEEEeccCC------CCcceEEEEEcC---CCchhhcccCCcc
Confidence 12344444 4999999999999999999999999988775432 223799999999 7779999999999
Q ss_pred EEEEE
Q 017773 353 LHVFV 357 (366)
Q Consensus 353 i~iw~ 357 (366)
+.+|.
T Consensus 455 v~lW~ 459 (459)
T KOG0288|consen 455 VTLWT 459 (459)
T ss_pred eEecC
Confidence 99994
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.9e-33 Score=233.32 Aligned_cols=239 Identities=25% Similarity=0.439 Sum_probs=206.3
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...+..+.|+|+++++++++.+|.|++|++.+.+... . +..|...+.++.|+|+ +.++++++.+
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~---~----------~~~~~~~i~~~~~~~~--~~~~~~~~~~ 114 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---T----------LTGHTSYVSSVAFSPD--GRILSSSSRD 114 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE---E----------EeccCCcEEEEEEcCC--CCEEEEecCC
Confidence 78889999999999999999999999999998753322 2 2234567999999998 8899999989
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+.|.+||+.+++....+..|.. .+.+++|+|++..+ ++++.++.|++||++ ..+....+. .+...+.++.|+|+
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~~~~i~i~d~~--~~~~~~~~~--~~~~~i~~~~~~~~ 188 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFV-ASSSQDGTIKLWDLR--TGKCVATLT--GHTGEVNSVAFSPD 188 (289)
T ss_pred CeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEE-EEEcCCCcEEEEEcc--ccccceeEe--cCccccceEEECCC
Confidence 9999999998888888887776 89999999986655 777779999999998 667777766 56668999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
+ ..+++++.++.|++||++.. +.+..+..|...+.++.|+ ++.++++++.|+.|++||+.+++.+..+..|...+..
T Consensus 189 ~-~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 189 G-EKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred c-CEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE
Confidence 8 67888888999999999886 6777777888899999999 6777888877999999999999999999988888877
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEE
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
++++ |++.+|++++.||.|++|+
T Consensus 267 ~~~~--~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWS--PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEC--CCCCEEEEecCCCeEEecC
Confidence 7777 9999999999999999996
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-34 Score=214.91 Aligned_cols=246 Identities=20% Similarity=0.415 Sum_probs=211.3
Q ss_pred CCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
-.+.+..++|+++. +.+++++.||.++|||+.... .++ ..++.|..+|.++.|++. .++.+++++.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi----------~~~kEH~~EV~Svdwn~~-~r~~~ltsSW 125 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPI----------HKFKEHKREVYSVDWNTV-RRRIFLTSSW 125 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC--cch----------hHHHhhhhheEEeccccc-cceeEEeecc
Confidence 47889999999965 688888899999999954322 122 234455678999999997 4677888899
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|++|++|+...++.+.++.+|.. .|...+|+|..+.++++++.|+.+++||++.+ ++... +. .|...+.|+.|+.
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~gh~~-~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~-i~--ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFNGHNS-CIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMS-IE--AHNSEILCCDWSK 200 (311)
T ss_pred CCceEeecCCCCcceEeecCCcc-EEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeE-EE--eccceeEeecccc
Confidence 99999999999999999999988 99999999999999999999999999999943 44444 44 5667999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccce
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNN 276 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~ 276 (366)
-..+++++|+.|+.|+.||+++...++..+.+|.-.|..+.|+ ....|++++.|-+++|||...+ ..+.+...|..-
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF 280 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF 280 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE
Confidence 8889999999999999999999988999999999999999998 6678999999999999999855 566677778888
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
+..+.|+.. ++.++|+.+.|+.++||+.
T Consensus 281 v~g~Dws~~-~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 281 VCGLDWSLF-DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eeccccccc-cCceeeecccccceeeecc
Confidence 888888864 7889999999999999984
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=224.60 Aligned_cols=283 Identities=21% Similarity=0.298 Sum_probs=237.5
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|+++...|..+.++||+.|..+.++|....+... .+.+|. ..|+.+.|+|+ ...+++++.|.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~----------kki~~v~~~~~--~~~v~~aSad~ 283 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHT----------KKITSVKFHKD--LDTVITASADE 283 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcc----------eEEEEEEeccc--hhheeecCCcc
Confidence 4568889998887899999999999999998877655 555554 57999999999 99999999999
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|++|.............|.. +|+.+..+|.|.|+ ++++.|++..+.|++ ++..+.........-.+++.+|+|||
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~-~V~~ls~h~tgeYl-lsAs~d~~w~Fsd~~--~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEE-PVTGLSLHPTGEYL-LSASNDGTWAFSDIS--SGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred eEEeeccccccCccccccccc-cceeeeeccCCcEE-EEecCCceEEEEEcc--CCcEEEEEeeccccceeEEeeEcCCc
Confidence 999999988777777788887 99999999999998 899999999999999 77777766643344579999999999
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc-eeee
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-NRNF 279 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~ 279 (366)
.++.+|..|+.+++||+... ..+..|.+|.++|..++|+ +|.+|++++.|+.|++||+|..+..+++..... .+..
T Consensus 360 -Lifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 360 -LIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred -eEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 89999999999999999998 5888999999999999999 999999999999999999999988888875443 3444
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeec--CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRW--GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
+.| ++.|.+|+.++.|=.|++++-.+ ...+.. ...|.+..+++.|.. ..+++++++.|..++++.
T Consensus 438 ~~f--D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~--------~~~~sg~st~v~Fg~---~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 438 LSF--DQSGTYLGIAGSDLQVYICKKKTKSWTEIKE--------LADHSGLSTGVRFGE---HAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEE--cCCCCeEEeecceeEEEEEecccccceeeeh--------hhhcccccceeeecc---cceEEeeccchhheEEee
Confidence 554 49999999998765555554332 222222 255788899999988 778999999999999886
Q ss_pred e
Q 017773 358 G 358 (366)
Q Consensus 358 ~ 358 (366)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 5
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=226.97 Aligned_cols=281 Identities=18% Similarity=0.289 Sum_probs=230.4
Q ss_pred ccCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+.. . +.+|.+.|..|++.. ..++++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~----------f~AH~G~V~Gi~v~~----~~~~tv 125 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---T----------FKAHEGLVRGICVTQ----TSFFTV 125 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---e----------eecccCceeeEEecc----cceEEe
Confidence 3499999999999987 789999999999999998866555 3 445567899999985 478889
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|.+|+.|.++. .+..++.+.. .+..+.-+..+..+ +|++. .|.|||.. ...++..+.... ..|.++.|
T Consensus 126 gdDKtvK~wk~~~-~p~~tilg~s--~~~gIdh~~~~~~F-aTcGe--~i~IWD~~--R~~Pv~smswG~--Dti~svkf 195 (433)
T KOG0268|consen 126 GDDKTVKQWKIDG-PPLHTILGKS--VYLGIDHHRKNSVF-ATCGE--QIDIWDEQ--RDNPVSSMSWGA--DSISSVKF 195 (433)
T ss_pred cCCcceeeeeccC-Ccceeeeccc--cccccccccccccc-cccCc--eeeecccc--cCCccceeecCC--CceeEEec
Confidence 9999999999876 3666665554 67788777655555 88876 49999998 678888887544 48999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVN 275 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~ 275 (366)
+|....+|+++..|+.|.+||+++. .+++... ..-.-+.++|+ ....|+++..|..++.||++.. +++..+.+|..
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs 273 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQA-SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS 273 (433)
T ss_pred CCCcchheeeeccCCceEEEecccC-Cccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccce
Confidence 9998889999999999999999998 5665544 23455789999 7778999999999999999976 78888999998
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
.+..+.++ |.|+-+++|+.|.+|+||..+.+.....+- ..-...|.++.|+. |.+++++|++|+.|++
T Consensus 274 AV~dVdfs--ptG~EfvsgsyDksIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~---Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 274 AVMDVDFS--PTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSM---DSKYIISGSDDGNVRL 341 (433)
T ss_pred eEEEeccC--CCcchhccccccceEEEeecCCCcchhhhh-------HhhhheeeEEEEec---cccEEEecCCCcceee
Confidence 87777666 999999999999999999998776554331 11245799999999 8889999999999999
Q ss_pred EEecc
Q 017773 356 FVGKK 360 (366)
Q Consensus 356 w~~~~ 360 (366)
|...-
T Consensus 342 Wka~A 346 (433)
T KOG0268|consen 342 WKAKA 346 (433)
T ss_pred eecch
Confidence 98653
No 66
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=225.59 Aligned_cols=293 Identities=18% Similarity=0.265 Sum_probs=238.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceeccccccee-e---eecCceeceee-eecCCceeEEEEecCCCCcEE
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVV-A---VVDHSKVCDYY-ICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~---~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l 114 (366)
.|.-+|.+|+++|++++.++++.+|+|.=|++.++....-.. . +..|..+...- ..|...+.+++.+++ |++|
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gkyl 217 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GKYL 217 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--CcEE
Confidence 399999999999999999999999999999999877542111 1 12132222222 378889999999999 9999
Q ss_pred EEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 115 GSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 115 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
++|+.|..|.||+.++.+.+..+.+|.+ .|.+++|-.....+ ++++.|+.+++|++. ....+.++. +|++.|..
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~-~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~--~~s~vetly--GHqd~v~~ 291 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRG-AVSSLAFRKGTSEL-YSASADRSVKVWSID--QLSYVETLY--GHQDGVLG 291 (479)
T ss_pred EecCCCceEEEecCcccchhhccccccc-ceeeeeeecCccce-eeeecCCceEEEehh--HhHHHHHHh--CCccceee
Confidence 9999999999999999999999999998 99999999877777 999999999999998 566666655 88889999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec-c
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-H 273 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~ 273 (366)
+.....+ +.+.+|+.|.++++|++.. .....+.+|.+.+.|++|-+...|++|+.+|.|.+|++.+.+++.+.+. |
T Consensus 292 IdaL~re-R~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 292 IDALSRE-RCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred echhccc-ceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccc
Confidence 9988876 7888888999999999955 4667788899999999999889999999999999999999988877652 2
Q ss_pred c-----------ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC----ceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 274 V-----------NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG----EPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 274 ~-----------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
. ..++.++.. |...++++|+.+|.|++|.+..+ +++..+. -.+.|++++|++
T Consensus 369 gv~~~~~~~~~~~Witsla~i--~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---------~~GfVNsl~f~~-- 435 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVI--PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---------LVGFVNSLAFSN-- 435 (479)
T ss_pred cccCCccccccccceeeeEec--ccCceEEecCCCCceEEEEecCCccccceeeecc---------cccEEEEEEEcc--
Confidence 1 145566666 99999999999999999999877 3333332 368899999999
Q ss_pred CCceEE-EEeCCCCcEEEEE
Q 017773 339 EDECTL-VAGGSDGLLHVFV 357 (366)
Q Consensus 339 ~~~~~l-~s~~~dg~i~iw~ 357 (366)
+|+.+ +..+....+-=|-
T Consensus 436 -sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 -SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred -CCCEEEEecccccccceee
Confidence 77744 4445555554453
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=239.64 Aligned_cols=274 Identities=17% Similarity=0.315 Sum_probs=227.0
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
.-....+-.||..-+.++.... .|.++|+.++|+|.+.++++|+.|-.|++|+..+.++.. ++.+|
T Consensus 27 slHsG~IQlWDYRM~tli~rFd----eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---tL~GH------- 92 (1202)
T KOG0292|consen 27 SLHSGVIQLWDYRMGTLIDRFD----EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---TLLGH------- 92 (1202)
T ss_pred eecCceeeeehhhhhhHHhhhh----ccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---hhccc-------
Confidence 3345566677777666654443 399999999999999999999999999999999887766 55555
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
-..|..+.|++. -.++++++.|.+|+||+..+++++..+.+|.. -|.|..|+|....+ ++++.|.+|++||+.
T Consensus 93 ---lDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlI-VSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 93 ---LDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLI-VSASLDQTVRVWDIS 165 (1202)
T ss_pred ---cceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceE-EEecccceEEEEeec
Confidence 457999999998 89999999999999999999999999999998 99999999987766 999999999999986
Q ss_pred CC------CC-------------------ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CCee
Q 017773 174 CD------GG-------------------KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DPVL 227 (366)
Q Consensus 174 ~~------~~-------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~ 227 (366)
.- .+ ..+...-..+|...|+-++|+|.- .++++|+.|..|++|.+.... -.+.
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeeh
Confidence 20 00 122233345788899999999987 799999999999999987641 1355
Q ss_pred EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 228 VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 228 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+..+|...|.++-|+ ..+++++.+.|++|++||+.....+++++.....-++++.. |..+++++|- |+-+.+|.++
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laah--P~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH--PELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEec--CCcceeeeec-CCceEEEEEc
Confidence 678999999999999 78899999999999999999999999998777777777776 9999888875 4557788877
Q ss_pred cCceEE
Q 017773 307 WGEPVW 312 (366)
Q Consensus 307 ~~~~~~ 312 (366)
...+..
T Consensus 322 RErpa~ 327 (1202)
T KOG0292|consen 322 RERPAY 327 (1202)
T ss_pred ccCceE
Confidence 554443
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-33 Score=234.49 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=227.1
Q ss_pred EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEE
Q 017773 46 GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVME 125 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 125 (366)
+-+.|+. .+.||+|. ...|.+|+..++.... ....+ ...|+++.|+++ |.+|++|..+|.|.|
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~---l~~~~----------~~~vtSv~ws~~--G~~LavG~~~g~v~i 243 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTE---LCSFG----------EELVTSVKWSPD--GSHLAVGTSDGTVQI 243 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEE---eEecC----------CCceEEEEECCC--CCEEEEeecCCeEEE
Confidence 3466773 45777775 4589999988876322 11111 357999999999 999999999999999
Q ss_pred EeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE
Q 017773 126 YDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 205 (366)
||..+.+.+..+..++...|-+++|+ +. ++.+|+.|+.|..+|++ ..+.... ...+|...|+.++|++++ .++
T Consensus 244 wD~~~~k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR--~~~~~~~-~~~~H~qeVCgLkws~d~-~~l 316 (484)
T KOG0305|consen 244 WDVKEQKKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVR--ISQHVVS-TLQGHRQEVCGLKWSPDG-NQL 316 (484)
T ss_pred EehhhccccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEe--cchhhhh-hhhcccceeeeeEECCCC-Cee
Confidence 99999999999999344499999998 33 45999999999999999 4444444 345788999999999998 899
Q ss_pred EEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEe--CCCcEEEEecCCCceeeeeecccceeeeEE
Q 017773 206 AAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAG--TDGCLKLWNVNDSRVIRTYKGHVNNRNFVG 281 (366)
Q Consensus 206 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (366)
|+|+.|+.+.|||.... .+...+..|.+.|.+++|+ ...+||+|+ .|++|++||..+++.+..+... ..|..+.
T Consensus 317 ASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~ 394 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLI 394 (484)
T ss_pred ccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEE
Confidence 99999999999999776 7888999999999999998 778898876 7999999999999999888754 3566666
Q ss_pred EEEecCCCeEEE--ecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 282 LSVWRHGGLLGC--GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 282 ~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
|+ +..+-|++ |..++.|.||+..+.+++..+ .+|...|..++++| ||..+++|+.|.++++|++-
T Consensus 395 Ws--k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--------~gH~~RVl~la~SP---dg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 395 WS--KKYKELLSTHGYSENQITLWKYPSMKLVAEL--------LGHTSRVLYLALSP---DGETIVTGAADETLRFWNLF 461 (484)
T ss_pred Ec--CCCCEEEEecCCCCCcEEEEeccccceeeee--------cCCcceeEEEEECC---CCCEEEEecccCcEEecccc
Confidence 66 77765554 455789999999987776655 78999999999999 89999999999999999985
Q ss_pred c
Q 017773 360 K 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 462 ~ 462 (484)
T KOG0305|consen 462 D 462 (484)
T ss_pred C
Confidence 4
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.9e-32 Score=254.45 Aligned_cols=270 Identities=15% Similarity=0.191 Sum_probs=212.2
Q ss_pred ccccccceeeeeecCCCceeeecCCCCc----------------------cCCCceEEEEECCC-CCEEEEeecCCeEEE
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNA----------------------AVSDSIGVIEFDPS-DSVFATGGIARKIRI 68 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~----------------------~h~~~i~~~~~s~~-~~~l~t~~~dg~i~i 68 (366)
..+.+.+..+.|++++..++++..++.+ .+...|.+++|+|. +.+||+++.||+|++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 3456667777888887777766655322 13467889999874 789999999999999
Q ss_pred EEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeE
Q 017773 69 YNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSV 148 (366)
Q Consensus 69 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i 148 (366)
||+.+++... . +.+|...|++++|+|. ++.+|++|+.|++|++||+.++..+..+..+. .|.++
T Consensus 560 Wd~~~~~~~~---~----------~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~--~v~~v 623 (793)
T PLN00181 560 WDVARSQLVT---E----------MKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGTIKTKA--NICCV 623 (793)
T ss_pred EECCCCeEEE---E----------ecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEEEecCC--CeEEE
Confidence 9998654322 2 3355678999999973 28899999999999999999988888877553 79999
Q ss_pred EeccCCCceEEEecCCCcEEEeeCCCCCCc-eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-----
Q 017773 149 DYSKGDPVLGASGSDDGTMQMWDPRCDGGK-CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM----- 222 (366)
Q Consensus 149 ~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----- 222 (366)
.|++.+..++++|+.||.|++||++ ..+ ....+. +|...|.++.|. ++ ..+++++.|+.|++||++..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~--~~~~~~~~~~--~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLR--NPKLPLCTMI--GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECC--CCCccceEec--CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC
Confidence 9976544445999999999999998 333 344444 678899999997 44 68999999999999999753
Q ss_pred CCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee-------------cccceeeeEEEEEecCC
Q 017773 223 VDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK-------------GHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 223 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 288 (366)
..++..+.+|...+..++|+ ++.+|++|+.|+.|++|+.....++..+. .+...|..++|+ |++
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws--~~~ 775 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR--GQS 775 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc--CCC
Confidence 24677889999999999999 88999999999999999987665443321 233445666665 999
Q ss_pred CeEEEecCCCeEEEEEe
Q 017773 289 GLLGCGSETNQVFVYDV 305 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~ 305 (366)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=235.39 Aligned_cols=256 Identities=21% Similarity=0.351 Sum_probs=217.6
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
....+.+|+..|+++.|.|. .+.+|++++.|+.|+||++-. +.+++++.+|.. +|.+++|++++..+ ++++.|+.+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-~Vrd~~~s~~g~~f-LS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-PVRDASFNNCGTSF-LSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchh-hhhhhhccccCCee-eeeecceee
Confidence 34457788999999999994 289999999999999999976 789999999998 99999999999998 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
++||++ +++++..+.... .++|+.|+|++.+.+++|+.|+.|+.||+|++ +.++.+..|-+.|..+.|- ++.+
T Consensus 283 KlwDtE--TG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTE--TGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eeeccc--cceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCce
Confidence 999999 899999997543 89999999999899999999999999999998 7889999999999999998 9999
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCC
Q 017773 247 LVTAGTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 325 (366)
+++++.|+.++||+.+.+.+++.+.. +.....++... |++.++++-+.|+.|.++.+...-.+ .......+|
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~--P~~~~~~aQs~dN~i~ifs~~~~~r~-----nkkK~feGh 429 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH--PNGKWFAAQSMDNYIAIFSTVPPFRL-----NKKKRFEGH 429 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecC--CCCCeehhhccCceEEEEeccccccc-----CHhhhhcce
Confidence 99999999999999998876654432 22234466666 99999999999999999986532211 112223445
Q ss_pred C--ceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 326 R--GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 326 ~--~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
. +.-..+.||| ||.+|++|+.||.+.+||-++.++
T Consensus 430 ~vaGys~~v~fSp---DG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 430 SVAGYSCQVDFSP---DGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred eccCceeeEEEcC---CCCeEEeecCCccEEEeechhhhh
Confidence 3 4567889999 999999999999999999887544
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.4e-33 Score=218.34 Aligned_cols=266 Identities=20% Similarity=0.359 Sum_probs=219.7
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCC---EEEEeecCCeEEEEEceecccccceeeeecCce
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDS---VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
+..+.+.....|+..+....... +|.++|.+++|.-... .|++++.|.++++|.++.+......
T Consensus 119 ltgsYDg~~riWd~~Gk~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~-------- 185 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDLKGKSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA-------- 185 (423)
T ss_pred EEeecCCeeEEEecCCceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH--------
Confidence 44566778888988887664433 4999999888865443 5999999999999999876543311
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-------------------------CceeEeeecCCCC
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-------------------------KVPIFERDEHGGR 143 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~~~ 143 (366)
...-.||...|-++...++ |.++++|+.|.+|.+|+.+. +.++..+.+|..
T Consensus 186 -~~~~~GHk~~V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~- 261 (423)
T KOG0313|consen 186 -LKVCRGHKRSVDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE- 261 (423)
T ss_pred -HhHhcccccceeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc-
Confidence 1112277789999999999 99999999999999999321 134557788888
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV 223 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 223 (366)
+|.++.|++ ...+ ++++.|.+|+.||+. .+.....+... ..+.++.++|.. .+|++|+.|..+++||.|++.
T Consensus 262 ~Vs~V~w~d-~~v~-yS~SwDHTIk~WDle--tg~~~~~~~~~---ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVI-YSVSWDHTIKVWDLE--TGGLKSTLTTN---KSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ceeeEEEcC-CCce-EeecccceEEEEEee--cccceeeeecC---cceeEeeccccc-ceeeecCCCCceeecCCCCCC
Confidence 999999998 4444 999999999999999 78887777643 389999999986 899999999999999999874
Q ss_pred C--CeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCc-eeeeeecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 224 D--PVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSR-VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 224 ~--~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
. ..+.+.+|+..|.++.|+ +...|++++.|+++++||+|+.+ ++..+.+|...+.++.|. ++..+++|+.|.
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~---~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN---EGGLIVSGGADN 410 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc---CCceEEeccCcc
Confidence 3 456788999999999999 67789999999999999999987 999999999988777775 788999999999
Q ss_pred eEEEEEe
Q 017773 299 QVFVYDV 305 (366)
Q Consensus 299 ~i~iwd~ 305 (366)
+|+|+.-
T Consensus 411 ~l~i~~~ 417 (423)
T KOG0313|consen 411 KLRIFKG 417 (423)
T ss_pred eEEEecc
Confidence 9999864
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-32 Score=207.28 Aligned_cols=273 Identities=16% Similarity=0.241 Sum_probs=214.1
Q ss_pred CCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.++.|.+++||| ...++++++.||+||+|+++...... + .....|+++|.+++|+.+ |..+++|+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~------~-----ka~~~~~~PvL~v~Wsdd--gskVf~g~~ 92 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV------P-----KAQQSHDGPVLDVCWSDD--GSKVFSGGC 92 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc------c-----hhhhccCCCeEEEEEccC--CceEEeecc
Confidence 588999999999 55677799999999999998742211 0 123346789999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC-ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP-VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
|+.+++||+.++ ....+..|.. +|..+.|-+... .+|++|+.|.+|+.||++ ...++.++.+++ .+.++..-
T Consensus 93 Dk~~k~wDL~S~-Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R--~~~pv~t~~LPe---RvYa~Dv~ 165 (347)
T KOG0647|consen 93 DKQAKLWDLASG-QVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR--SSNPVATLQLPE---RVYAADVL 165 (347)
T ss_pred CCceEEEEccCC-Ceeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccC--CCCeeeeeeccc---eeeehhcc
Confidence 999999999999 4666777877 999999987544 345999999999999999 788888888665 77777665
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEee-cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC--ceeeeeeccc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS--RVIRTYKGHV 274 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~ 274 (366)
. .+++++..+..|.+|+++++........ .-+-.+++++.. +.+.++.|+-+|.+.+..+..+ +.-.+|+.|.
T Consensus 166 ~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 166 Y---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred C---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 3 5888899999999999987643333222 234467888887 7777899999999999998876 4445667775
Q ss_pred c------eeeeE-EEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 275 N------NRNFV-GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 275 ~------~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
. .|+.+ .++|+|....|++++.||+..+||-+....+... ..|..+|++.+|+. +|.++|-+
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--------~~~~qpItcc~fn~---~G~ifaYA 311 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--------ETHPQPITCCSFNR---NGSIFAYA 311 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc--------CcCCCccceeEecC---CCCEEEEE
Confidence 3 12222 3445599999999999999999998877766554 44789999999999 77787643
No 73
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=4e-31 Score=232.18 Aligned_cols=247 Identities=16% Similarity=0.192 Sum_probs=187.2
Q ss_pred eecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-------
Q 017773 60 GGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV------- 132 (366)
Q Consensus 60 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------- 132 (366)
|+.++.|++|+...... ...+.+|.++|.+++|+|+ .+.+|++|+.|++|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~-------------v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP-------------VIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred CCceeEEEeeecCCCce-------------EEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 66788999998754321 1234566789999999996 36899999999999999997542
Q ss_pred -eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC
Q 017773 133 -PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 133 -~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 211 (366)
++..+.+|.. .|.+++|+|++..++++++.|+.|++||++ +++....+. +...|.+++|+|+| .+|++++.|
T Consensus 116 ~p~~~L~gH~~-~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~--tg~~~~~i~---~~~~V~SlswspdG-~lLat~s~D 188 (568)
T PTZ00420 116 DPQCILKGHKK-KISIIDWNPMNYYIMCSSGFDSFVNIWDIE--NEKRAFQIN---MPKKLSSLKWNIKG-NLLSGTCVG 188 (568)
T ss_pred cceEEeecCCC-cEEEEEECCCCCeEEEEEeCCCeEEEEECC--CCcEEEEEe---cCCcEEEEEECCCC-CEEEEEecC
Confidence 2345677776 999999999998887899999999999999 666665554 34589999999998 789999999
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEE-----EEc-CCCEEEEEeCCC----cEEEEecCC-CceeeeeecccceeeeE
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYI-----RFL-DVDTLVTAGTDG----CLKLWNVND-SRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~-----~~~-~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~~~~~~~ 280 (366)
+.|++||++++ +.+..+.+|.+.+... .|+ ++.++++++.|+ +|+|||+++ .+++..+..+... ..+
T Consensus 189 ~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-~~L 266 (568)
T PTZ00420 189 KHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS-APL 266 (568)
T ss_pred CEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc-cce
Confidence 99999999997 6778888998765433 234 678899888774 799999995 5666665433322 222
Q ss_pred EEEE-ecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 281 GLSV-WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 281 ~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
...+ .+++.++++|+.|+.|++|++..+.....-. ..+..++.+++|.|
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-------~~s~~p~~g~~f~P 316 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-------YKSCSPFRSFGFLP 316 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc-------cccCCCccceEEcc
Confidence 2222 2468899999999999999998764322211 22567888999999
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.8e-32 Score=242.39 Aligned_cols=301 Identities=19% Similarity=0.257 Sum_probs=240.5
Q ss_pred CCCceEEEEECCCCCEEEEee--cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDSVFATGG--IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+...|.+++.+|||..+|||+ .||.++||+.+.-.......... -.+..-....|.+.|+|+.|+|+ |.+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~-l~k~l~~m~~h~~sv~CVR~S~d--G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN-LPKHLCTMDDHDGSVNCVRFSPD--GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc-cchhheeeccccCceeEEEECCC--CCeEeecc
Confidence 466799999999999999999 89999999977532111000000 11122234568899999999999 99999999
Q ss_pred CCCcEEEEeCCC------------------CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCcee
Q 017773 119 YDGVVMEYDLEK------------------KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCV 180 (366)
Q Consensus 119 ~dg~i~iw~~~~------------------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~ 180 (366)
.|+.|.+|.... -+....+.+|.. .|..++|+|++.++ ++++.|++|.+|+.+ +.+.+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~l-vS~s~DnsViiwn~~--tF~~~ 164 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLL-VSVSLDNSVIIWNAK--TFELL 164 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-ccceeccCCCccEE-EEecccceEEEEccc--cceee
Confidence 999999998872 025667788887 99999999988877 999999999999999 78888
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc------cCcEEEEEEc-CCCEEEEEe--
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH------RKTVTYIRFL-DVDTLVTAG-- 251 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~-- 251 (366)
..+. +|...|..+.|.|-| +++|+-+.|++|++|++.+. ...+.+..+ ...+..+.|+ +|++|++..
T Consensus 165 ~vl~--~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLR--GHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeee--cccccccceEECCcc-CeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 8887 788899999999999 89999999999999997764 344444432 2357789999 999998764
Q ss_pred --CCCcEEEEecCCCceeeeeecccceeeeEEEEEe----cC-------CC----eEEEecCCCeEEEEEeecCceEEEE
Q 017773 252 --TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVW----RH-------GG----LLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 252 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~----~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.-.++.|.+-.+.+.-..+-+|..++.++.|.+. +. .. .+|+|+.|++|.||.....+|+...
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 2346889998888888899999999999988721 01 11 6889999999999999877777654
Q ss_pred ecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 315 DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
. .-....|.+++|+| ||..|+.++.||+|.+...+.+.
T Consensus 321 ~-------~lf~~SI~DmsWsp---dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 321 H-------NLFNKSIVDMSWSP---DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred h-------hhhcCceeeeeEcC---CCCeEEEEecCCeEEEEEcchHH
Confidence 2 11256799999999 99999999999999999987643
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=212.11 Aligned_cols=305 Identities=21% Similarity=0.320 Sum_probs=251.0
Q ss_pred CCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEe
Q 017773 27 LRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWK 106 (366)
Q Consensus 27 ~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 106 (366)
.+...+.......+|++.|..++.......+.+++.|.+.+||.++++.++. .+.+|.+.|+++.|+
T Consensus 133 ~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-------------~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 133 DGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-------------TYTGHTGSVNSIKFH 199 (481)
T ss_pred CCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-------------eecccccceeeEEec
Confidence 3333344444456799999999999888899999999999999999988766 345667899999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeC------CC----------------------------------CceeEeeecCCCCcee
Q 017773 107 PGTSGRVLGSGDYDGVVMEYDL------EK----------------------------------KVPIFERDEHGGRRVW 146 (366)
Q Consensus 107 ~~~~~~~l~~~~~dg~i~iw~~------~~----------------------------------~~~~~~~~~~~~~~v~ 146 (366)
+. +.++++++.|++-.||.. .. ..++..+.+|.. .|.
T Consensus 200 ~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~-vV~ 276 (481)
T KOG0300|consen 200 NS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA-VVS 276 (481)
T ss_pred cc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc-ceE
Confidence 98 999999999999999972 11 013345667776 888
Q ss_pred eEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe
Q 017773 147 SVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV 226 (366)
Q Consensus 147 ~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 226 (366)
+..|...++.+ ++++.|.+..+||++ +++.+..+. +|....+-++-+|.. +++++.+.|.+.++||++..-..+
T Consensus 277 a~dWL~gg~Q~-vTaSWDRTAnlwDVE--tge~v~~Lt--GHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV 350 (481)
T KOG0300|consen 277 ACDWLAGGQQM-VTASWDRTANLWDVE--TGEVVNILT--GHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSV 350 (481)
T ss_pred ehhhhcCccee-eeeeccccceeeeec--cCceecccc--CcchhccccccCCcc-eEEEEeccCceeEeccchhhccee
Confidence 99999988887 999999999999999 899999888 677789999999986 899999999999999999876778
Q ss_pred eEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 227 LVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 227 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
..|.+|...|+++.|..+..+++|+.|.+|++||+++. .++.++.. ..+++.++++ ..+..++.--++..|++||+
T Consensus 351 ~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs--~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVS--KGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEee--cCCceEEeccCCceEEEEec
Confidence 89999999999999996678999999999999999986 57777775 3467778777 66778888888999999999
Q ss_pred ecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 306 RWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+... +..+ |.....+|...|.+++|....|- .-|+++|.|..+.=|++..-
T Consensus 428 nG~R-laRl---PrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNR-LARL---PRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCc-cccC---CcccccccceeeeeeeccccCcc-cccccccccceeeeeEeccc
Confidence 7443 3322 22344789999999999875543 45889999999999998753
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9e-31 Score=193.69 Aligned_cols=300 Identities=16% Similarity=0.267 Sum_probs=230.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccce--eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPV--VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
-...|.+++|+|.|.+.|+|+...++||............ .......-.+.....|.+.|+|.+|+|+ |+++++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecC
Confidence 4678999999999999999999999999876543222100 0001111122334568899999999999 99999999
Q ss_pred CCCcEEEEeCCCCc-----eeEeeecCCCCceeeEEeccC---CCceEEEec-CCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 119 YDGVVMEYDLEKKV-----PIFERDEHGGRRVWSVDYSKG---DPVLGASGS-DDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 119 ~dg~i~iw~~~~~~-----~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
.|.+|++.-++... ...++..|.+ .|..++|..+ +..++++++ .|..|++-|.. .++..+.+. +|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~--~g~~~~a~s--ght 183 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDCG--RGQGFHALS--GHT 183 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeecC--CCCcceeec--CCc
Confidence 99999998765432 2345677777 9999999754 344546544 47778888877 788888887 777
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--c-----cCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--H-----RKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-----~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
+.|.++- +-++ .++++|+.|.+|++||++-. ..+..+.. | ...|.+++.. .|.+|++|-.|....+||+
T Consensus 184 ghilaly-swn~-~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 184 GHILALY-SWNG-AMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ccEEEEE-EecC-cEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 7887763 2234 79999999999999999976 45554432 2 3568888888 8999999999999999999
Q ss_pred CCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCc
Q 017773 262 NDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
+.+++++.+..|...|.++.|+ |...++++++.|..|++-|+.. .....+ +......|...+..+.|+| ..
T Consensus 261 rg~r~iq~f~phsadir~vrfs--p~a~yllt~syd~~ikltdlqg-dla~el---~~~vv~ehkdk~i~~rwh~---~d 331 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFS--PGAHYLLTCSYDMKIKLTDLQG-DLAHEL---PIMVVAEHKDKAIQCRWHP---QD 331 (350)
T ss_pred eCCceeeeeCCCccceeEEEeC--CCceEEEEecccceEEEeeccc-chhhcC---ceEEEEeccCceEEEEecC---cc
Confidence 9999999999999999999988 9999999999999999999862 222111 1122256889999999999 66
Q ss_pred eEEEEeCCCCcEEEEEec
Q 017773 342 CTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 342 ~~l~s~~~dg~i~iw~~~ 359 (366)
-.+++.+.|.++.+|-+.
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 689999999999999765
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-32 Score=227.06 Aligned_cols=271 Identities=18% Similarity=0.310 Sum_probs=225.7
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCce
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
.+..+.+....++.|+...+.+..-... +.+.|+++.|+++|.+||+|..+|.|.|||....+... .+..+
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~----~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~---~~~~~-- 258 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSF----GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR---TLRGS-- 258 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEec----CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc---cccCC--
Confidence 4456677778899999988875443332 38899999999999999999999999999998766544 22221
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEe-eecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFE-RDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
|...|-+++|. +..+.+|+.|+.|..+|+...+.... +.+|.. .|..++|++++.++ ++|+.|+.+
T Consensus 259 -------h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-eVCgLkws~d~~~l-ASGgnDN~~ 325 (484)
T KOG0305|consen 259 -------HASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-EVCGLKWSPDGNQL-ASGGNDNVV 325 (484)
T ss_pred -------cCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccc-eeeeeEECCCCCee-ccCCCccce
Confidence 56789999999 45899999999999999998765555 667776 99999999999998 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CC
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~ 244 (366)
.|||.. ..++...+. .|...|..++|+|....+||+|+ .|+.|++||..++ ..+.... -...|..|.|+ ..
T Consensus 326 ~Iwd~~--~~~p~~~~~--~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGL--SPEPKFTFT--EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKY 399 (484)
T ss_pred EeccCC--CccccEEEe--ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCC
Confidence 999996 566666666 78889999999999888999965 7999999999987 5555554 45789999999 65
Q ss_pred CEEEEE--eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 245 DTLVTA--GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 245 ~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
+.|+++ ..++.|.||+..+.+.+..+.+|...|..++++ |||..+++|+.|.++++|++-...
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S--Pdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS--PDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC--CCCCEEEEecccCcEEeccccCCC
Confidence 555553 356789999999999999999999987777776 999999999999999999997643
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=227.30 Aligned_cols=281 Identities=21% Similarity=0.318 Sum_probs=232.8
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeE-EEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSS-LKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~ 117 (366)
.+|...|..+++.+.. .++++++||++++|+-...+... ...+.+ |.+-|.. +++.+. ++.++++|
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~----------~~g~i~~~i~y~e~-~~~~l~~g 77 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEG----------PKGFIANSICYAES-DKGRLVVG 77 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceeccc----------Ccceeeccceeccc-cCcceEee
Confidence 3599999999987655 79999999999999976544322 112222 2344555 777763 36779999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|.+|.+|.+....+...+.+|.. .|.++....++. + ++|+.|.++++|... ++...+ .+|+..|.+++.
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~s-nVC~ls~~~~~~-~-iSgSWD~TakvW~~~----~l~~~l--~gH~asVWAv~~ 148 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKS-NVCSLSIGEDGT-L-ISGSWDSTAKVWRIG----ELVYSL--QGHTASVWAVAS 148 (745)
T ss_pred cccceEEEEecCCCCchhhhhcccc-ceeeeecCCcCc-e-EecccccceEEecch----hhhccc--CCcchheeeeee
Confidence 9999999999999999999999998 999999877666 5 999999999999865 444444 489999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
-|.+ .+++|+.|.+|++|.-. +.++++.+|...|+.+++-++..|++++.||.|++|++ +++.+.++.+|..-+
T Consensus 149 l~e~--~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v 222 (745)
T KOG0301|consen 149 LPEN--TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV 222 (745)
T ss_pred cCCC--cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEE
Confidence 9975 88999999999999752 68899999999999999998888999999999999998 889999999999999
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
++++.. .++..++++++|++++||+.. ++...+.++ ...|+++.+-+++. +++|+.||.||||.
T Consensus 223 Ysis~~--~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiWsa~~L~NgD----Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 223 YSISMA--LSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIWSAKVLLNGD----IVVGGSDGRVRVFT 286 (745)
T ss_pred EEEEec--CCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceEEEEEeeCCC----EEEeccCceEEEEE
Confidence 998866 888999999999999999976 666666543 34799999988443 78899999999999
Q ss_pred ecccCC
Q 017773 358 GKKKPL 363 (366)
Q Consensus 358 ~~~~~l 363 (366)
.+....
T Consensus 287 ~~k~R~ 292 (745)
T KOG0301|consen 287 VDKDRK 292 (745)
T ss_pred eccccc
Confidence 876443
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-32 Score=219.82 Aligned_cols=258 Identities=21% Similarity=0.339 Sum_probs=209.0
Q ss_pred cCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.|.+.|+.+.+-|.. .++|+++..+.|.|||.......... .+...+-..+.+|...-++++|++.. .-.|++++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---~~~~~Pdl~L~gH~~eg~glsWn~~~-~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---SGECRPDLRLKGHEKEGYGLSWNRQQ-EGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---cccCCCceEEEeeccccccccccccc-ceeEeecc
Confidence 399999999999976 57788888999999998764433211 11222233566777778899999973 55788999
Q ss_pred CCCcEEEEeCCCCc-------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC
Q 017773 119 YDGVVMEYDLEKKV-------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA 191 (366)
Q Consensus 119 ~dg~i~iw~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~ 191 (366)
.|++|++||+.... +...+.+|.. .|..++|++....+|++++.|+.+.|||++..+.++..... +|.+.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--ah~~~ 274 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--AHSAE 274 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCc-ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--ccCCc
Confidence 99999999997532 3456778887 99999999999999999999999999999943333333333 78889
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCC-----
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDS----- 264 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~----- 264 (366)
+.|++|+|.+..+||+|+.|++|++||+|+..+++..+.+|...|.++.|+ ....|++++.|+.+.+||+..-
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 999999999989999999999999999999989999999999999999998 6778999999999999999642
Q ss_pred ---------ceeeeeecccceeeeEEEEEecCCC-eEEEecCCCeEEEEEee
Q 017773 265 ---------RVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVR 306 (366)
Q Consensus 265 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 306 (366)
+++..-.||...|..+.|. |+.. .+++.++|+.+.||++.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWn--p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWN--PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCC--CCCCeEEEEecCCceEEEeecc
Confidence 3456667888877666555 7654 56788999999999986
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=218.95 Aligned_cols=242 Identities=22% Similarity=0.300 Sum_probs=206.5
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-.+.++++.|-.||++||+|+..|.|+|||..+.... +.+.+|+.+|..+.|+|. ++..|++|+.|
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL-------------R~~~ah~apv~~~~f~~~-d~t~l~s~sDd 132 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL-------------RQLYAHQAPVHVTKFSPQ-DNTMLVSGSDD 132 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH-------------HHHhhccCceeEEEeccc-CCeEEEecCCC
Confidence 5788999999999999999999999999996552222 234566789999999997 57889999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+.+++||+.+......+.+|++ .|.+.+|+|..++++++|+.||.|++||++..+ ..+..+ .|..+|..+.+-|.
T Consensus 133 ~v~k~~d~s~a~v~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el---nhg~pVe~vl~lps 207 (487)
T KOG0310|consen 133 KVVKYWDLSTAYVQAELSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL---NHGCPVESVLALPS 207 (487)
T ss_pred ceEEEEEcCCcEEEEEecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe---cCCCceeeEEEcCC
Confidence 9999999999887778999998 999999999999999999999999999999332 555555 36669999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
| .++++++ ...|++||+-++.+.+..+..|...|+|+++. ++..|++++.|+.+++||+.+.+.+..+.- .++|-.
T Consensus 208 g-s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLs 284 (487)
T KOG0310|consen 208 G-SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLS 284 (487)
T ss_pred C-CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceee
Confidence 8 6777764 46899999998877777777799999999998 889999999999999999999899888874 456666
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
++++ |+++.++.|..||.+.+=+..
T Consensus 285 iavs--~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 285 IAVS--PDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EEec--CCCceEEEecccceeeeehhh
Confidence 6666 999999999999988876443
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.1e-32 Score=219.55 Aligned_cols=264 Identities=19% Similarity=0.295 Sum_probs=213.5
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----------ceeEeeecCCCCceeeEEeccCCCceEEEe
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----------VPIFERDEHGGRRVWSVDYSKGDPVLGASG 161 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 161 (366)
....|++.|+.+.+-|. +..++++.+..+.|.|||..+. .+-..+.+|.+ .-.+++|++.....++++
T Consensus 119 ~~i~h~gEVnRaRymPQ-np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQ-NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EeccCCccchhhhhCCC-CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeec
Confidence 34578999999999997 4678888899999999998643 22336788887 678899999887777999
Q ss_pred cCCCcEEEeeCCCCCCc---eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC-CCCCeeEeecccCcEE
Q 017773 162 SDDGTMQMWDPRCDGGK---CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK-MVDPVLVFDGHRKTVT 237 (366)
Q Consensus 162 ~~dg~v~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~ 237 (366)
+.|+.|++||+...... ........+|...|..++|+|....++++++.|+.+.|||+|+ ..++.....+|.++++
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999999843221 1222233488899999999999889999999999999999995 3367788889999999
Q ss_pred EEEEc--CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEE-
Q 017773 238 YIRFL--DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV- 313 (366)
Q Consensus 238 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 313 (366)
+++|+ ++..||+|+.|++|++||+|+. +++.++.+|...|..+.|++ .....|++++.|+.+.+||+..-.....
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP-h~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP-HNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC-CCCceeEecccCCcEEEEeccccccccCh
Confidence 99998 8889999999999999999986 68899999999999888884 2457889999999999999964221110
Q ss_pred ---E--ecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 314 ---H--DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 314 ---~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
- ..+......||...|..+.|+|..| ..+++.++|+.+.||+...
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCCceEEEeeccc
Confidence 0 0111233489999999999999766 6899999999999999763
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.7e-32 Score=203.42 Aligned_cols=246 Identities=21% Similarity=0.285 Sum_probs=207.0
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEe--eecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFE--RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
.+.+|..+|.+++|+.+ |..|++|+.|+++.+|+++..+.... ..+|.+ .|-.++|+|..+.++++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEccc--CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCCCcceEEecCCceEEE
Confidence 34567788999999999 99999999999999999988754443 456776 89999999988888899999999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
||++ .+++...+...+ .-.-+.|+|+| .+++++..|..|.+.|.++. +.....+ ....++.++|+ ++++|+
T Consensus 92 wd~r--~~k~~~~i~~~~---eni~i~wsp~g-~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 92 WDIR--SGKCTARIETKG---ENINITWSPDG-EYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSNDLFF 163 (313)
T ss_pred EEec--cCcEEEEeeccC---cceEEEEcCCC-CEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCCCEEE
Confidence 9999 889998887544 34457899998 89999999999999999986 4444433 55678889998 788887
Q ss_pred EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 249 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
.....|+|.|......+++..++.|... |+++.|+|+|+++|+|+.|..+.+||++.--+.+.+ ..+.-+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~sn--CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i--------sRldwp 233 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSN--CICIEFDPDGRYFATGSADALVSLWDVDELICERCI--------SRLDWP 233 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcc--eEEEEECCCCceEeeccccceeeccChhHhhhheee--------ccccCc
Confidence 7777899999999999999999999755 556666699999999999999999999876666555 446789
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
|+.+.|+. ||++||++++|..|-|=+++++
T Consensus 234 VRTlSFS~---dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 234 VRTLSFSH---DGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred eEEEEecc---CcceeeccCccceEEeEecccC
Confidence 99999999 9999999999999877666554
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=214.11 Aligned_cols=274 Identities=18% Similarity=0.213 Sum_probs=239.0
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCcc-----------------------CCCceEEEEECCCCCEEEEeecCCe
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNAA-----------------------VSDSIGVIEFDPSDSVFATGGIARK 65 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-----------------------h~~~i~~~~~s~~~~~l~t~~~dg~ 65 (366)
.+.+....-..+-.|+|++++++.++.++.+. +.++|.|+.||.|..+||+|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 34455556667778888888888888777543 8999999999999999999999999
Q ss_pred EEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCce
Q 017773 66 IRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRV 145 (366)
Q Consensus 66 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v 145 (366)
|++|.+.++.+.. .+ -.+|...|+|+.|+.+ +..+++++.|.++++--+.+|+.+.++.+|.. -|
T Consensus 287 IKvWri~tG~ClR---rF---------drAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yv 351 (508)
T KOG0275|consen 287 IKVWRIETGQCLR---RF---------DRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YV 351 (508)
T ss_pred EEEEEEecchHHH---Hh---------hhhhccCeeEEEEccC--cchhhcccccceEEEeccccchhHHHhcCccc-cc
Confidence 9999999998876 22 1245678999999999 99999999999999999999999999999998 99
Q ss_pred eeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC
Q 017773 146 WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP 225 (366)
Q Consensus 146 ~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 225 (366)
+...|.++|.++ ++++.||+|++|+.. +.+++.+++..+...+|.++..-|..+..++++...+++++.++.. +.
T Consensus 352 n~a~ft~dG~~i-isaSsDgtvkvW~~K--tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--Qv 426 (508)
T KOG0275|consen 352 NEATFTDDGHHI-ISASSDGTVKVWHGK--TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QV 426 (508)
T ss_pred cceEEcCCCCeE-EEecCCccEEEecCc--chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eE
Confidence 999999999998 999999999999999 8999999998888889999999998888999999999999999876 46
Q ss_pred eeEeecc---cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEE
Q 017773 226 VLVFDGH---RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVF 301 (366)
Q Consensus 226 ~~~~~~~---~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 301 (366)
++.+... .+...+.+.+ .|.++.+.+.|+.++.|...+|++..++..|...+-.++-. |..+.+++-++||.++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH--PHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH--PHQNLLASYSEDGLLK 504 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC--cccchhhhhcccchhh
Confidence 6766532 2345555667 89999999999999999999999999999998876666655 8899999999999999
Q ss_pred EEE
Q 017773 302 VYD 304 (366)
Q Consensus 302 iwd 304 (366)
+|.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 995
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=233.47 Aligned_cols=267 Identities=23% Similarity=0.411 Sum_probs=228.4
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceecee
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
....+..+..|+...+..+... ..+|.+.|.+++|..-+.+|++|+.|.++++||..++.+.. .+
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~---l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l--------- 287 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTR---LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SL--------- 287 (537)
T ss_pred ecCCCceeEEeecccceEEEee---ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---Ee---------
Confidence 3445666678998888877653 33599999999999878899999999999999999988766 33
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
.+|.+.|.++...+ .++++|+.|.+|++|+++++..+..+.+|.. +|.++..+ +..+ ++|+.|++|++||+
T Consensus 288 -~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~l-vsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 288 -QGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLL-VSGSYDGTVKVWDP 358 (537)
T ss_pred -cCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEE-EEEecCceEEEEEh
Confidence 34556788888775 4888999999999999999999999998887 99999998 5555 99999999999999
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeC
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
. +++++..+. +|...|.++.+.+. ..+++|+.|++|++||+++..+++..+.+|...+..+.+ .+++|++++.
T Consensus 359 ~--~~~cl~sl~--gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~a 431 (537)
T KOG0274|consen 359 R--TGKCLKSLS--GHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSSA 431 (537)
T ss_pred h--hceeeeeec--CCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEeccc
Confidence 9 899999999 68889999988875 689999999999999999875688999999998876665 5789999999
Q ss_pred CCcEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 253 DGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
|++|++||..++++++++.+ |...+..+++. ...+++++.||.+++||++++++...+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC----cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999998 56666655543 467888899999999999999888655
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=227.49 Aligned_cols=335 Identities=19% Similarity=0.208 Sum_probs=252.5
Q ss_pred CCCCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCC-----------CCEEEEeecCCeEEEEEceecc
Q 017773 7 HQQPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPS-----------DSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 7 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----------~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
....+...-++...++||...-.-+... ...+-|...|+.+.--|. ...+.|++.|++||+|++....
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct 413 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT 413 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence 3445555667888888888664443222 123448888988887662 1368999999999999998632
Q ss_pred ccccee------------------------eeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 76 VDHPVV------------------------AVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 76 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
....+. ......+.........-.+.+++.+|+ |++||+|..-|++++|++..-
T Consensus 414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEEEehhh
Confidence 221100 000011111122233457999999999 999999999999999999999
Q ss_pred ceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC-CcEEEEE
Q 017773 132 VPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG-SSLVAAG 208 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~ 208 (366)
+....+..|.. .|.|+.|+.. +..|+++++.|+-|.+||.. ....++.++. +|...|+++.|.-.| ...++++
T Consensus 492 ~~~~~~eAHes-EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-rny~l~qtld--~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 492 EYTCFMEAHES-EILCLEYSFPVLTNKLLASASRDRLIHVYDVK-RNYDLVQTLD--GHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred hhhhheecccc-eeEEEeecCchhhhHhhhhccCCceEEEEecc-cccchhhhhc--ccccceeEEEEeecCCceEEEec
Confidence 88888999988 9999999853 45566999999999999998 2345555555 788899999998765 3567788
Q ss_pred ecCCeEEEEecCCCCCCeeEeec-----ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccce-eeeEE
Q 017773 209 CADKKAYAYDVRKMVDPVLVFDG-----HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN-RNFVG 281 (366)
Q Consensus 209 ~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~ 281 (366)
+.|..|.+--.+.. .....+.. .+..++.|+.. ..+++++++.|..|+|||+.+++..+.|++..+. -..+.
T Consensus 568 GADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred cCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 88888765433322 11222221 23568888887 8889999999999999999999999999873322 34566
Q ss_pred EEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 282 LSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 282 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+...|.|.||++...|.++.++|+.+|+++... .+|...|+++.|.+ |.+.|++.+.||.|.||.+..
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------~GHsE~VTG~kF~n---DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------TGHSEAVTGVKFLN---DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhh--------cCcchheeeeeecc---cchhheeecCCceEEEEECch
Confidence 666699999999999999999999999998665 78999999999999 888999999999999999864
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=229.44 Aligned_cols=295 Identities=17% Similarity=0.258 Sum_probs=233.0
Q ss_pred CCCceE---EEEEC-CCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 41 VSDSIG---VIEFD-PSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 41 h~~~i~---~~~~s-~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
|...|. ++..+ |.++||+|||+||.|++|++....... .......+..|..-|+.+....+ ++.|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------s~~~~asme~HsDWVNDiiL~~~--~~tlIS 90 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------STPYIASMEHHSDWVNDIILCGN--GKTLIS 90 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc-------ccchhhhhhhhHhHHhhHHhhcC--CCceEE
Confidence 444454 45555 456789999999999999987643321 00112234566778999999988 999999
Q ss_pred EcCCCcEEEEeCCCC--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee------cCC-C
Q 017773 117 GDYDGVVMEYDLEKK--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV------QPS-A 187 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~------~~~-~ 187 (366)
++.|-+|++|+...+ -++.++..|.+ .|.|+++-.....++++|+.|+.|.+||+.....+.+..+ ... +
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 999999999999887 57778888988 9999999544556669999999999999993222222221 222 6
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV 266 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 266 (366)
+..+|++++.++.| .++++|+.++.+++||.++. +.+..+.+|...|..+..+ +|..+++++.||+|++||+...++
T Consensus 170 ~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred CccceeeeecCCcc-eEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence 77899999999998 89999999999999999998 6777888999999999999 999999999999999999999999
Q ss_pred eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 267 IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
+.++..|...++.+..+ |+-..+++|+.||.|..=|+++......+ +. ...+|..+..+. ..+-+-+
T Consensus 248 l~T~~vH~e~VWaL~~~--~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck-------~daPv~~l~~~~---~~~~~Wv 314 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSS--PSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CK-------EDAPVLKLHLHE---HDNSVWV 314 (735)
T ss_pred eeeEEeccCceEEEeeC--CCcceEEecCCCCcEEecccCCchhheEe-ec-------CCCchhhhhhcc---ccCCcee
Confidence 99999999998888887 89999999999999999999874322221 11 245677777664 3334466
Q ss_pred eCCCCcEEEEEecc
Q 017773 347 GGSDGLLHVFVGKK 360 (366)
Q Consensus 347 ~~~dg~i~iw~~~~ 360 (366)
++.|+.|+-|..+.
T Consensus 315 tTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEP 328 (735)
T ss_pred eeccccceecCCcc
Confidence 77888899887654
No 87
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3e-30 Score=226.73 Aligned_cols=232 Identities=10% Similarity=0.190 Sum_probs=180.2
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC------ceeEeecCCCCCC
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG------KCVSTVQPSASRS 190 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~------~~~~~~~~~~~~~ 190 (366)
|+.++.|++|+......+..+.+|.. +|.+++|+|+...++++|+.|+.|++||+..... .++..+ .+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCC
Confidence 56688999999988888888899987 9999999998555559999999999999973211 122233 36788
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeee
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT 269 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 269 (366)
.|.+++|+|++..++++++.|+.|++||++++ +....+. |...|.+++|+ ++.+|++++.|+.|++||+++++.+.+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999999998667789999999999999987 4555554 56789999999 999999999999999999999999999
Q ss_pred eecccceeeeEEE---EEecCCCeEEEecCCC----eEEEEEeec-CceEEEEecccccccCCCCceeeEEEeeccCCCc
Q 017773 270 YKGHVNNRNFVGL---SVWRHGGLLGCGSETN----QVFVYDVRW-GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 270 ~~~~~~~~~~~~~---~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
+.+|.+.+....+ .+++++.+|++++.|+ .|+|||+++ ++++...... .+.+.+......+ ++
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld------~~~~~L~p~~D~~---tg 275 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID------NASAPLIPHYDES---TG 275 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec------CCccceEEeeeCC---CC
Confidence 9999876543332 2347888999877664 799999995 5566554321 1233333333333 68
Q ss_pred eEEEEeCCCCcEEEEEecccC
Q 017773 342 CTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 342 ~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.++++|+.|+.|++|++..+.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CEEEEEECCCeEEEEEccCCc
Confidence 899999999999999987543
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-31 Score=202.72 Aligned_cols=244 Identities=17% Similarity=0.246 Sum_probs=202.6
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
..|.++|++++.+ +.++|+|+.|-+|+|||+....+.. .+..|.+.|+++.|.++.....|++|+
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-------------~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-------------ILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-------------ceeccccceEEEEecCCcchhheeeec
Confidence 3499999999986 8899999999999999998866554 244456789999999984345899999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.||.|.+|+...-..+..++.|.+ .|+.++.+|.++.- ++.+.|+.+++||+- .++.-....... ..+.+.|+
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLA-LsVg~D~~lr~WNLV--~Gr~a~v~~L~~---~at~v~w~ 177 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLA-LSVGGDQVLRTWNLV--RGRVAFVLNLKN---KATLVSWS 177 (362)
T ss_pred CCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceE-EEEcCCceeeeehhh--cCccceeeccCC---cceeeEEc
Confidence 999999999999999999999999 69999999988865 788889999999998 566555554432 44559999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
|.| ..++.+.. ..|-+|.+.+. .....+. ....+.++.|.++..|++|+.|+.|++||..+..+...+.+|...|-
T Consensus 178 ~~G-d~F~v~~~-~~i~i~q~d~A-~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 178 PQG-DHFVVSGR-NKIDIYQLDNA-SVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred CCC-CEEEEEec-cEEEEEecccH-hHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 999 55555544 56889988775 3333332 33567788888889999999999999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
.+.+--.|++.+|++++.||.|+|||++..
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 998776789999999999999999999866
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-30 Score=200.61 Aligned_cols=277 Identities=17% Similarity=0.247 Sum_probs=214.2
Q ss_pred EEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEe
Q 017773 57 FATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFE 136 (366)
Q Consensus 57 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 136 (366)
|++|++...|.=+++....... ......+-.+.-.+..|.++|++++.+ +.++|+|+.|.+|+|||+.+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~-~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGC-TDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccc-ccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcc
Confidence 6777777777666665433100 001111111122356788999999998 78999999999999999999999999
Q ss_pred eecCCCCceeeEEeccCCC--ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 137 RDEHGGRRVWSVDYSKGDP--VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 137 ~~~~~~~~v~~i~~~~~~~--~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
+..|.+ .|+++.|.+.-. .| ++|+.||.|.+|+.. +..++..++ +|...|+.++.+|.+ ++.++.+.|+.+
T Consensus 79 ll~Hag-sitaL~F~~~~S~shL-lS~sdDG~i~iw~~~--~W~~~~slK--~H~~~Vt~lsiHPS~-KLALsVg~D~~l 151 (362)
T KOG0294|consen 79 LLSHAG-SITALKFYPPLSKSHL-LSGSDDGHIIIWRVG--SWELLKSLK--AHKGQVTDLSIHPSG-KLALSVGGDQVL 151 (362)
T ss_pred eecccc-ceEEEEecCCcchhhe-eeecCCCcEEEEEcC--CeEEeeeec--ccccccceeEecCCC-ceEEEEcCCcee
Confidence 999987 999999998754 67 899999999999998 788888888 666689999999998 888888999999
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEE
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
++||+-.+ +.-....- ....+.+.|+ .|.+|+.++.+ .|-+|.+.+......+.... .+.++.| -++..|++
T Consensus 152 r~WNLV~G-r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~-r~l~~~~---l~~~~L~v 224 (362)
T KOG0294|consen 152 RTWNLVRG-RVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK-RILCATF---LDGSELLV 224 (362)
T ss_pred eeehhhcC-ccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc-cceeeee---cCCceEEE
Confidence 99999877 33232221 1223448999 88888888865 48899998887776665432 2233333 47889999
Q ss_pred ecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 294 GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 294 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
|++|+.|.+||.++..+...+ .+|...|.++.+-.+ |++.+|++++.||.|+|||++..
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~--------~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEF--------LAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEeccCCCccceee--------ecchhheeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence 999999999999987777665 679999999986532 37789999999999999999764
No 90
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.7e-30 Score=226.02 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=184.1
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-------------EeeecCCCCceeeEEecc-CCCceEEEecCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-------------FERDEHGGRRVWSVDYSK-GDPVLGASGSDDG 165 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~dg 165 (366)
|.....+++ +..+++++.+.....|+...+..+ ..+.+|.+ .|.+++|+| ++..| ++|+.|+
T Consensus 23 i~~~~~~~d--~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~d~~~L-aSgS~Dg 98 (493)
T PTZ00421 23 VTPSTALWD--CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPFDPQKL-FTASEDG 98 (493)
T ss_pred cccccccCC--CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCCCCCEE-EEEeCCC
Confidence 444455555 555666666666666665433221 23567776 999999999 55555 9999999
Q ss_pred cEEEeeCCCCC-----CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEE
Q 017773 166 TMQMWDPRCDG-----GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 166 ~v~~~d~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 240 (366)
+|++||+.... ..++..+. +|...|.+++|+|++.++|++|+.|+.|++||++++ +....+..|...|.+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEE
Confidence 99999997321 12344444 788899999999987679999999999999999987 67788889999999999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee-eEEEEEecCCCeEEEec----CCCeEEEEEeecCc-eEEE
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN-FVGLSVWRHGGLLGCGS----ETNQVFVYDVRWGE-PVWV 313 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~ 313 (366)
|+ ++.+|++++.|+.|++||+++++.+.++.+|..... .+. |.+++..+++++ .|+.|++||+++.. +...
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~--w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL--WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE--EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99 999999999999999999999999999998876432 233 347777776653 47999999998654 3322
Q ss_pred EecccccccCCCCceeeEEEeeccCCCceEEEEeC-CCCcEEEEEecccC
Q 017773 314 HDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG-SDGLLHVFVGKKKP 362 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~ 362 (366)
.. ..+...+....|+| ++++|++++ .|+.|++|++.++.
T Consensus 254 ~~-------~d~~~~~~~~~~d~---d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 254 VD-------LDQSSALFIPFFDE---DTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ec-------cCCCCceEEEEEcC---CCCEEEEEEeCCCeEEEEEeeCCc
Confidence 21 12234566677888 888888887 59999999998754
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-31 Score=225.03 Aligned_cols=268 Identities=17% Similarity=0.232 Sum_probs=229.3
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCce
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
..........++..|+.++.+.+.... .+.+.+..|-|.++++++|...|.+.+||+.+.....
T Consensus 385 ~~~~~Sga~~SikiWn~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E---------- 448 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE---------- 448 (888)
T ss_pred ceeeeecCCCcEEEEEccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh----------
Confidence 344556667788889998877776664 4479999999999999999999999999998865543
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-----Ccee--------EeeecCCCCceeeEEeccCCC
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-----KVPI--------FERDEHGGRRVWSVDYSKGDP 155 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~--------~~~~~~~~~~v~~i~~~~~~~ 155 (366)
...+|.+.|.+++.+|+ +..+++|+.|.+|++||..- +... .++... . .|.|+.++|+++
T Consensus 449 ---ti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~-d-dvL~v~~Spdgk 521 (888)
T KOG0306|consen 449 ---TIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE-D-DVLCVSVSPDGK 521 (888)
T ss_pred ---hhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc-c-cEEEEEEcCCCc
Confidence 23456789999999999 99999999999999999742 2111 122222 2 799999999999
Q ss_pred ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc
Q 017773 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
+| +.+--|.++++|-+. +.+....+- +|.-||.|+..+|++ +++++|+.|.+|++|-++-+ .+.+.+.+|...
T Consensus 522 ~L-aVsLLdnTVkVyflD--tlKFflsLY--GHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFG-DCHKS~fAHdDS 594 (888)
T KOG0306|consen 522 LL-AVSLLDNTVKVYFLD--TLKFFLSLY--GHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDS 594 (888)
T ss_pred EE-EEEeccCeEEEEEec--ceeeeeeec--ccccceeEEeccCCc-CeEEeccCCCceEEeccccc-hhhhhhhcccCc
Confidence 88 899999999999998 555555544 899999999999998 89999999999999999887 788899999999
Q ss_pred EEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 236 VTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 236 v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
|+++.|. ....|++++.|+.|+-||-.+.+.+..+.+|...+++++++ |+|.++++++.|.+|++|.....
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~--~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS--PNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc--CCCCeEEeccCCceeEeeeccCc
Confidence 9999998 77789999999999999999999999999999999999998 99999999999999999986543
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=229.11 Aligned_cols=244 Identities=17% Similarity=0.282 Sum_probs=196.1
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-------------------------------------------
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK------------------------------------------- 131 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------------------------------------- 131 (366)
+|.+.|.++.|+++ |+|||+|+.|+.|+||.+...
T Consensus 265 ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 78999999999999 999999999999999987540
Q ss_pred -----------------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 132 -----------------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 132 -----------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
+++..+.+|.+ .|.++.|+.+ .+ |++++.|.+|+||++. ...++..+. |...|+|
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn-~f-LLSSSMDKTVRLWh~~--~~~CL~~F~---HndfVTc 414 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKN-NF-LLSSSMDKTVRLWHPG--RKECLKVFS---HNDFVTC 414 (712)
T ss_pred cCCccccCCCccccccccchhhhhccch-hheecccccC-Ce-eEeccccccEEeecCC--CcceeeEEe---cCCeeEE
Confidence 12224567777 8999999974 34 4899999999999999 889999985 8889999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
++|+|.+.+++++|+-||.|+||++... .+.....-..-|++++|. +|+..+.|+.+|.+++|+....+....+..+
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999988899999999999999999875 344444445889999999 9999999999999999999887766554421
Q ss_pred --------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEE
Q 017773 274 --------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLV 345 (366)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 345 (366)
...|+.+++.+. +...+++.+.|.+|+|+|.++.+++..++-.. ....-....|+. ||++|+
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------n~~SQ~~Asfs~---Dgk~IV 562 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------NTSSQISASFSS---DGKHIV 562 (712)
T ss_pred eccCccccCceeeeeEecCC-CCCeEEEecCCCceEEEeccchhhhhhhcccc------cCCcceeeeEcc---CCCEEE
Confidence 126777877732 33356666789999999998777776653110 122235677888 999999
Q ss_pred EeCCCCcEEEEEecc
Q 017773 346 AGGSDGLLHVFVGKK 360 (366)
Q Consensus 346 s~~~dg~i~iw~~~~ 360 (366)
++++|..|+||+.+.
T Consensus 563 s~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDS 577 (712)
T ss_pred EeecCceEEEEeCCC
Confidence 999999999999854
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.3e-30 Score=195.87 Aligned_cols=300 Identities=18% Similarity=0.239 Sum_probs=227.7
Q ss_pred cCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCce--eceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 40 AVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK--VCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 40 ~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
.|.+.|+++...+ .|+|+++|+.||.|.+||++....-........|.- ...--.+|.-.|.++.|-|- +.-++.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCceeec
Confidence 4999999999998 579999999999999999987542111001111111 01112356678999999997 3568889
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCC--CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGD--PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
++.|.++++||.++.+....++... .|.+-+++|-. ..|+++|..+-.|++.|+. ++...+.+. +|.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~--SGs~sH~Ls--GHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA--SGSFSHTLS--GHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEecc--CCcceeeec--cccCceEE
Confidence 9999999999999988888777665 78888888853 4677999999999999999 899999988 89999999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCee--------------EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEE
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL--------------VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iw 259 (366)
+.|+|.....|++|+.||.|++||+|....+.. .-..|.+.++.++|. ++.++++++.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 999999888999999999999999986422222 234577899999998 99999999999999999
Q ss_pred ecCCCceee-eee--ccccee-eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 260 NVNDSRVIR-TYK--GHVNNR-NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 260 d~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
+..+|+.-. .+- .|.... ..+... +.+...++---.++.+.++++-.+..+..+ ..|-..|.+.++-
T Consensus 274 n~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l--------~~h~k~i~c~~~~ 344 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL--------STHLKRINCAAYR 344 (397)
T ss_pred ecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee--------ecccceeeEEeec
Confidence 998874221 110 111110 011111 123344444445688999999888888776 4577889999999
Q ss_pred ccCCCceEEEEeCCCCcEEEEEe
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
| +-+...+|..|+.|..|..
T Consensus 345 ~---~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 P---DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred C---chhhhhccccCCccccccc
Confidence 8 7778999999999999976
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1e-29 Score=197.11 Aligned_cols=309 Identities=17% Similarity=0.237 Sum_probs=216.9
Q ss_pred eeeeecCCCceeeecC-CCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCC
Q 017773 20 RCEWDFNLRTTVSSSS-SPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPA 98 (366)
Q Consensus 20 ~~~w~~~~~~~~~~~~-~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
.-.|.+.......... ..+-+|.+.|++++|+.||++|||++.|+.|+||++++-.... |.-....+. -+
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------Hr~~R~nve--~d 133 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------HRCIRQNVE--YD 133 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------hhHhhcccc--CC
Confidence 3456666555443322 1233599999999999999999999999999999998743221 111000000 01
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc---eeE--------eeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV---PIF--------ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~--------~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
--+.+.|.|| ....+++.-...++++|.+...+ ... .+...+.-.+..+-.-.++.++ ++++.|..|
T Consensus 134 hpT~V~FapD-c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~i-msas~dt~i 211 (420)
T KOG2096|consen 134 HPTRVVFAPD-CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYI-MSASLDTKI 211 (420)
T ss_pred CceEEEECCC-cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEE-EEecCCCcE
Confidence 3578999999 23455555566789999875432 111 1111122245556665555655 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-------CCCeeEeecccCcEEEEE
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-------VDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~ 240 (366)
.+|+++ ++.+..+... ...-+..+.+|+| +++++++..--|++|.+--. -..+..+.+|+..|..++
T Consensus 212 ~lw~lk---Gq~L~~idtn--q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 212 CLWDLK---GQLLQSIDTN--QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred EEEecC---Cceeeeeccc--cccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 999998 7888877643 3366778999999 78999888889999987321 124567889999999999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCC-------Cceeeeee--cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVND-------SRVIRTYK--GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
|+ +...+++.+.||++++||..- .+.+++.. .|...-.-+.++.+|+|+.|+.+.. ..|+++..++|+.
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~ 364 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKD 364 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCcc
Confidence 99 888999999999999999852 22333321 1222222234455599999987754 5799999999887
Q ss_pred EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 311 VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
...++ ..|...|.+++|+| +|++++++| |..+++..
T Consensus 365 ~~~~e-------~~h~~~Is~is~~~---~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 365 YPELE-------DIHSTTISSISYSS---DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred chhHH-------HhhcCceeeEEecC---CCcEEeeec-ceeeeeec
Confidence 76554 56899999999999 999999997 66788775
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.98 E-value=3.4e-29 Score=193.32 Aligned_cols=268 Identities=21% Similarity=0.316 Sum_probs=209.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
.++.|.+|.|+|.++.|++++.||.+++|++....... ...|..++.+++|.+ ...+++|+.|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------------~~~~~~plL~c~F~d---~~~~~~G~~d 74 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------------KFKHGAPLLDCAFAD---ESTIVTGGLD 74 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------------heecCCceeeeeccC---CceEEEeccC
Confidence 57889999999999999999999999999998764322 223456899999998 4678899999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
|.|+.+|++++... .+..|.. +|.+|.+.+....+ ++|+.|++|++||.+ .......+. ....|.++....
T Consensus 75 g~vr~~Dln~~~~~-~igth~~-~i~ci~~~~~~~~v-IsgsWD~~ik~wD~R--~~~~~~~~d---~~kkVy~~~v~g- 145 (323)
T KOG1036|consen 75 GQVRRYDLNTGNED-QIGTHDE-GIRCIEYSYEVGCV-ISGSWDKTIKFWDPR--NKVVVGTFD---QGKKVYCMDVSG- 145 (323)
T ss_pred ceEEEEEecCCcce-eeccCCC-ceEEEEeeccCCeE-EEcccCccEEEEecc--ccccccccc---cCceEEEEeccC-
Confidence 99999999987644 3445655 99999999876666 999999999999998 433444443 223888888763
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEe-ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC----ceeeeeeccc
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVF-DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS----RVIRTYKGHV 274 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~ 274 (366)
+.|++|+.+..+.+||+|+...+.+.. ..-+..+.++++. ++.=++.++-||+|.+=.+... +.-..|+.|.
T Consensus 146 --~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 146 --NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred --CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 688899999999999999985554332 2345678899887 6777899999999887666554 3344566554
Q ss_pred c---------eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEE
Q 017773 275 N---------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLV 345 (366)
Q Consensus 275 ~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 345 (366)
. +|+.++|+ |-...|+||+.||.|.+||+.+.+.+..+. .-...|.+++|+. +|..||
T Consensus 224 ~~~~~~~~~yPVNai~Fh--p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--------~~~~SI~slsfs~---dG~~LA 290 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFH--PIHGTFATGGSDGIVNIWDLFNRKRLKQLA--------KYETSISSLSFSM---DGSLLA 290 (323)
T ss_pred cccCCceEEEEeceeEec--cccceEEecCCCceEEEccCcchhhhhhcc--------CCCCceEEEEecc---CCCeEE
Confidence 2 45666655 889999999999999999999988887662 2356799999999 888999
Q ss_pred EeCC
Q 017773 346 AGGS 349 (366)
Q Consensus 346 s~~~ 349 (366)
.++.
T Consensus 291 ia~s 294 (323)
T KOG1036|consen 291 IASS 294 (323)
T ss_pred EEec
Confidence 8864
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=3.4e-31 Score=198.54 Aligned_cols=243 Identities=18% Similarity=0.284 Sum_probs=208.9
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|++.|.....+.+....|+++.|=+-++||.-++..+. .+ . |..-|.+++|+.+ .++|++|+.
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh---sf-~----------hkhivk~~af~~d--s~~lltgg~ 120 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH---SF-E----------HKHIVKAVAFSQD--SNYLLTGGQ 120 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh---hh-h----------hhheeeeEEeccc--chhhhccch
Confidence 399999999999999899999999999999998887765 22 2 2235899999999 999999999
Q ss_pred CCcEEEEeCCCCc-eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKV-PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
+..++++|++..+ +..++.+|.+ .|..+.|...++.+ ++++.|++|++||.+ ++..++.+.... +|+++.++
T Consensus 121 ekllrvfdln~p~App~E~~ghtg-~Ir~v~wc~eD~~i-LSSadd~tVRLWD~r--Tgt~v~sL~~~s---~VtSlEvs 193 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTG-GIRTVLWCHEDKCI-LSSADDKTVRLWDHR--TGTEVQSLEFNS---PVTSLEVS 193 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCC-cceeEEEeccCceE-EeeccCCceEEEEec--cCcEEEEEecCC---CCcceeec
Confidence 9999999998764 5677888888 99999999887777 777999999999999 899999987654 89999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee-ecccce
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY-KGHVNN 276 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 276 (366)
++| .++.++ ..+.|.+||..+. .+++.++. ...|.+...+ +...+++|+.|..++.||..+++.+..+ ++|.++
T Consensus 194 ~dG-~ilTia-~gssV~Fwdaksf-~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp 269 (334)
T KOG0278|consen 194 QDG-RILTIA-YGSSVKFWDAKSF-GLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP 269 (334)
T ss_pred cCC-CEEEEe-cCceeEEeccccc-cceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence 998 555554 7788999999987 56666653 4567788887 6788999999999999999999998886 899999
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
|.++.|+ |+|...++|++||+|++|.+..++..
T Consensus 270 VhcVrFS--PdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 270 VHCVRFS--PDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEEEEC--CCCceeeccCCCceEEEEEecCCCch
Confidence 9988888 99999999999999999998876654
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=195.46 Aligned_cols=286 Identities=15% Similarity=0.232 Sum_probs=214.9
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
-.|+.|++.|.+||+|+.||.|.|||+.+..... .+.+|..+|++++|+++ |+.|++++.|..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar-------------~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~ 90 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR-------------MLSAHVRPITSLCWSRD--GRKLLTSSRDWSIK 90 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh-------------hhhccccceeEEEecCC--CCEeeeecCCceeE
Confidence 7899999999999999999999999998854332 45566679999999999 99999999999999
Q ss_pred EEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcE
Q 017773 125 EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSL 204 (366)
Q Consensus 125 iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (366)
+||+..|.+.+.+.... +|+...|+|.....+++.-.+..-.+-++..+....+..-..........+..|.+.| ++
T Consensus 91 lwDl~~gs~l~rirf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~y 167 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIRFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KY 167 (405)
T ss_pred EEeccCCCceeEEEccC--ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CE
Confidence 99999999998887766 9999999998777755555555566666652111111111111111122334688888 89
Q ss_pred EEEEecCCeEEEEecCCCCCCeeEeeccc-CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC---------ceeeeeecc
Q 017773 205 VAAGCADKKAYAYDVRKMVDPVLVFDGHR-KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS---------RVIRTYKGH 273 (366)
Q Consensus 205 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~ 273 (366)
+++|...|.+.++|..+. +.+..++... ..|..+.++ .+..|+.-+.|..||.|+++.- ++.+.++.-
T Consensus 168 IitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 999999999999999988 6777776555 678899999 9999999999999999998731 222333221
Q ss_pred cceeeeEEEEEecCCCeEEEecC-CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
-+....-.++|+.+|.|+++++. ...++||....|..++.+. +........+.|+|..| .+++- ..|.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~l~DV~whp~rp---~i~si-~sg~ 315 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEELLDVNWHPVRP---IIASI-ASGV 315 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhheeeccccccee---eeeec-cCCc
Confidence 11112223345589999988874 4579999999999988773 22235678999999777 77777 7899
Q ss_pred EEEEEecc
Q 017773 353 LHVFVGKK 360 (366)
Q Consensus 353 i~iw~~~~ 360 (366)
++||....
T Consensus 316 v~iw~~~~ 323 (405)
T KOG1273|consen 316 VYIWAVVQ 323 (405)
T ss_pred eEEEEeec
Confidence 99998754
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=180.88 Aligned_cols=248 Identities=22% Similarity=0.324 Sum_probs=198.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC--CCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT--SGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~ 118 (366)
|.+.|+|.+|+|+|+++|||+.|.+|++.-++...... .+|.. .+.-|.+.|..++|..++ .+.+|++++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~-----~g~dl---e~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA-----TGHDL---EFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccc-----cCcce---eeeecCCceeeeEEecCCCcCceEEEecC
Confidence 89999999999999999999999999998766544322 23322 345677899999997542 356777765
Q ss_pred -CCCcEEEEeCCCCceeEeeecCCCCceeeE-EeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC-----CCC
Q 017773 119 -YDGVVMEYDLEKKVPIFERDEHGGRRVWSV-DYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS-----RSA 191 (366)
Q Consensus 119 -~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~-----~~~ 191 (366)
.|..|++-|...++....+.+|.+ -|.++ .|+ +- ++++|+.|.+|++||++ -..++..+....| ...
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtg-hilalyswn--~~-m~~sgsqdktirfwdlr--v~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTG-HILALYSWN--GA-MFASGSQDKTIRFWDLR--VNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcc-cEEEEEEec--Cc-EEEccCCCceEEEEeee--ccceeeeccCcccCCCcccce
Confidence 467788889999999999999998 66665 343 44 55999999999999999 6677777654433 246
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC----ce
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS----RV 266 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~----~~ 266 (366)
|.+++..|.| +++++|..|....+||++.+ .+++.+.+|...|.++.|+ ...++++++.|..|++-|+... -+
T Consensus 234 vaav~vdpsg-rll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 234 VAAVAVDPSG-RLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELP 311 (350)
T ss_pred eEEEEECCCc-ceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCc
Confidence 8999999999 89999999999999999998 8999999999999999999 7778999999999999998642 23
Q ss_pred eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 267 IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.....|...+ +.+.|+|..--+++.+.|.++.+|-+.
T Consensus 312 ~~vv~ehkdk~--i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVAEHKDKA--IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEeccCce--EEEEecCccceeeeccCcceEEEeccC
Confidence 34445576654 444555998889999999999999763
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.7e-29 Score=209.32 Aligned_cols=288 Identities=19% Similarity=0.327 Sum_probs=234.2
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
+.+|.++||+.+.+.||.+-.+|.|.||++...-.... .+.++. ...|.+++|.+ +.+|++.+.+|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~---------drsIE~L~W~e---~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPE---------DRSIESLAWAE---GGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCC---------CCceeeEEEcc---CCeEEeecCCc
Confidence 67899999999999999999999999999987443332 233333 35799999996 67888888999
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|.-||+.+.++...+....+ .|++++.+|.+..+ +.|+.||.+..++.. .++..........++.+.+++|+|++
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg-~IWsiai~p~~~~l-~IgcddGvl~~~s~~--p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGG-AIWSIAINPENTIL-AIGCDDGVLYDFSIG--PDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred eEEEEecccCceeEEecCCCc-ceeEEEeCCccceE-EeecCCceEEEEecC--CceEEEEeecccccceEEEEEecCCc
Confidence 999999999999999988777 99999999988877 999999988888877 56655555554556799999999998
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEee----c----ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFD----G----HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
..+++|+.||.|++||...+. .+...+ . ...-|.++.+-....+++|..-|+|++||...+.+++.+..|
T Consensus 167 -~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h 244 (691)
T KOG2048|consen 167 -TKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCH 244 (691)
T ss_pred -cEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhh
Confidence 789999999999999999873 333111 1 223356666666678999999999999999999999999999
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
...|.+++.+ +++.++++++.|+.|.-|...+++..+... .....|...|.+++..+ + .|++||.|..+
T Consensus 245 ~adVl~Lav~--~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvrs~av~~---~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 245 DADVLALAVA--DNEDRVFSAGVDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVRSMAVIE---N--ALISGGRDFTL 313 (691)
T ss_pred hcceeEEEEc--CCCCeEEEccCCCceEEEEecCCccceeee----ccccCCcccceeeeeec---c--eEEecceeeEE
Confidence 9999888888 899999999999999999988765533332 22366888899999987 4 89999999988
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
.+=..+.
T Consensus 314 ~i~~s~~ 320 (691)
T KOG2048|consen 314 AICSSRE 320 (691)
T ss_pred EEccccc
Confidence 7765543
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-29 Score=187.79 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=204.3
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
+.+|..+++.+.|+.+ |++|++++.|.+..+|-...|+.+.++.+|.+ .|+++....+.+++ ++|+.|.++++||+
T Consensus 6 l~GHERplTqiKyN~e--GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~l-iTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNRE--GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHL-ITGSADQTAKLWDV 81 (327)
T ss_pred cccCccccceEEecCC--CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCccee-eeccccceeEEEEc
Confidence 4567789999999999 99999999999999999999999999999999 99999999998888 99999999999999
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-----CCeEEEEecCCC------CCCeeEeecccCcEEEEEE
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-----DKKAYAYDVRKM------VDPVLVFDGHRKTVTYIRF 241 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~ 241 (366)
+ +++++..++... +|..+.|++.| ++++.... .+.|.++|++.. ..+...+..+...++.+-|
T Consensus 82 ~--tGk~la~~k~~~---~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 82 E--TGKQLATWKTNS---PVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred C--CCcEEEEeecCC---eeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 9 899999998554 99999999998 56655543 467999999842 2567788888899999999
Q ss_pred c-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccc
Q 017773 242 L-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 242 ~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
. -+++|++|..||.|.+||++++ +.+...+.|...|+.++++ ++..++++++.|.+-++||+.+-+.++.+..
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s--~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--- 230 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS--RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT--- 230 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc--CCcceEEecccCccceeeeccceeeEEEeee---
Confidence 9 8899999999999999999997 5666668898899888888 9999999999999999999999999888763
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
..+|++.+++|.. ..++.||.
T Consensus 231 ------e~PvN~aaisP~~---d~VilgGG 251 (327)
T KOG0643|consen 231 ------ERPVNTAAISPLL---DHVILGGG 251 (327)
T ss_pred ------cccccceeccccc---ceEEecCC
Confidence 4689999999944 36666654
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=204.17 Aligned_cols=254 Identities=17% Similarity=0.250 Sum_probs=212.7
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE-ee-----------------ecCCCCceeeEEecc
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF-ER-----------------DEHGGRRVWSVDYSK 152 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~-----------------~~~~~~~v~~i~~~~ 152 (366)
..+..|.-++.+++++|+ ..+.++++.+++|.-|++.+++... .+ +.|.+ .+.+++.++
T Consensus 136 ~~~~~H~~s~~~vals~d--~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPD--DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSS 212 (479)
T ss_pred eeeccccCcceEEEeecc--ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcC
Confidence 445667789999999999 9999999999999999998876331 00 14444 799999999
Q ss_pred CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc
Q 017773 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232 (366)
Q Consensus 153 ~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 232 (366)
+++++ ++|+.|..|.||+.+ +.+.++.+. +|.+.|.+++|-... ..+++++.|.+|++|++... ..+.++.+|
T Consensus 213 Dgkyl-atgg~d~~v~Iw~~~--t~ehv~~~~--ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~-s~vetlyGH 285 (479)
T KOG0299|consen 213 DGKYL-ATGGRDRHVQIWDCD--TLEHVKVFK--GHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQL-SYVETLYGH 285 (479)
T ss_pred CCcEE-EecCCCceEEEecCc--ccchhhccc--ccccceeeeeeecCc-cceeeeecCCceEEEehhHh-HHHHHHhCC
Confidence 99998 999999999999999 888888876 888999999998754 78899999999999999987 688889999
Q ss_pred cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 233 RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 233 ~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
+..|..+... .+..+-+|+.|+++++|++... ....+.++.+.+.+++|- +...+++|+.+|.|.+|++...+++
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I---n~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI---NDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe---cccceeeccCCceEEEeeecccCce
Confidence 9999999887 6666666779999999999543 344677888888888886 6788999999999999999999999
Q ss_pred EEEeccccccc----CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 312 WVHDFEPVTAA----GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 312 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+.....+-... ..+..+|++++..| ...++|+|+.+|.|++|.++.+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~---~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIP---GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecc---cCceEEecCCCCceEEEEecCC
Confidence 88876542211 12335899999999 5559999999999999999875
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=220.38 Aligned_cols=290 Identities=21% Similarity=0.279 Sum_probs=225.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-+....+|+.+++-..++.++. ..++||.+.............+ .+... .-.+..+.|... +.++||+++..
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-~kqn~-----~~S~~DVkW~~~-~~NlIAT~s~n 109 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-TKQNK-----FYSAADVKWGQL-YSNLIATCSTN 109 (839)
T ss_pred cccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecc-cccce-----eeehhhcccccc-hhhhheeecCC
Confidence 4667888999999988998886 4788888776433221111111 11100 123667888844 57899999999
Q ss_pred CcEEEEeCCC---CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 121 GVVMEYDLEK---KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
|.|.+||+.. .+.+..+..|.. .+.++.|++..++++++|+.||.|++||++ ..+...++. +....|..++|
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~vK~~DlR--~~~S~~t~~--~nSESiRDV~f 184 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTVKCWDLR--SKKSKSTFR--SNSESIRDVKF 184 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceEEEEeee--ccccccccc--ccchhhhceee
Confidence 9999999987 566677888887 999999999999999999999999999999 666666666 35569999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc--eeeeeeccc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR--VIRTYKGHV 274 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~ 274 (366)
+|..++.++++...|.+++||+|...++...+.+|.++|.++.|+ ++.+|||||.|+.|+|||+.+.+ ++.++. ..
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Ti 263 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TI 263 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ec
Confidence 998889999999999999999999988899999999999999999 89999999999999999998764 344443 23
Q ss_pred ceeeeEEEEEecCC-CeEEEec--CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 275 NNRNFVGLSVWRHG-GLLGCGS--ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 275 ~~~~~~~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
.++..+.|. |.. ..|++++ .|-.|+|||++..-. |...+..|...++.++|-. .|-..|.+++.||
T Consensus 264 apv~rVkWR--P~~~~hLAtcsmv~dtsV~VWDvrRPYI-------P~~t~~eH~~~vt~i~W~~--~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 264 APVGRVKWR--PARSYHLATCSMVVDTSVHVWDVRRPYI-------PYATFLEHTDSVTGIAWDS--GDRINLWSCSKDG 332 (839)
T ss_pred ceeeeeeec--cCccchhhhhhccccceEEEEeeccccc-------cceeeeccCccccceeccC--CCceeeEeecCcc
Confidence 477888888 654 4566654 478899999974321 1222356899999999965 2456899999999
Q ss_pred cEEE
Q 017773 352 LLHV 355 (366)
Q Consensus 352 ~i~i 355 (366)
+|..
T Consensus 333 tv~q 336 (839)
T KOG0269|consen 333 TVLQ 336 (839)
T ss_pred HHHH
Confidence 8753
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.1e-29 Score=202.61 Aligned_cols=287 Identities=14% Similarity=0.229 Sum_probs=228.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc-EEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR-VLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~ 119 (366)
-.+.|++|.|+|...+|++|+.||+++||.++......... +. --..+|.+.+|.|+ |. .+++++.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-~~----------l~~fPi~~a~f~p~--G~~~i~~s~r 278 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-IH----------LEKFPIQKAEFAPN--GHSVIFTSGR 278 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-ee----------eccCccceeeecCC--CceEEEeccc
Confidence 35789999999999999999999999999998755433111 11 11247999999999 87 9999999
Q ss_pred CCcEEEEeCCCCceeE--eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 120 DGVVMEYDLEKKVPIF--ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
...++.||+.+.+... ...++....+.....+++++++ +..+..|.|.+.... +++.+..++..+ .|..++|
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fi-a~~G~~G~I~lLhak--T~eli~s~KieG---~v~~~~f 352 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFI-AIAGNNGHIHLLHAK--TKELITSFKIEG---VVSDFTF 352 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeE-EEcccCceEEeehhh--hhhhhheeeecc---EEeeEEE
Confidence 9999999999876433 3344444467888899999977 888899999999988 888898888665 8999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc--EEEEEEc-CCCEEEEEeCCCcEEEEecCC------Cceee
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT--VTYIRFL-DVDTLVTAGTDGCLKLWNVND------SRVIR 268 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~ 268 (366)
+.++ +.|++++.+|.|++||++.. ..+.++.. .+. -+.++.+ ++.+|++|+..|.|.|||..+ .+++.
T Consensus 353 sSds-k~l~~~~~~GeV~v~nl~~~-~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 353 SSDS-KELLASGGTGEVYVWNLRQN-SCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred ecCC-cEEEEEcCCceEEEEecCCc-ceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 9998 67777778999999999998 66766653 233 3556667 899999999999999999654 47777
Q ss_pred eeecccceeeeEEEEEecCCCeEEEecC--CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 269 TYKGHVNNRNFVGLSVWRHGGLLGCGSE--TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
.+..-...|+.++|. ++.++||.++. +..+++-.+.+......+. .. ...-+.|++|+|+| .+.+||.
T Consensus 430 ~~dNLtt~Itsl~Fn--~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP--~~---n~~vg~vtc~aFSP---~sG~lAv 499 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFN--HDAQILAIASRVKKNALRLVHVPSCTVFSNFP--TS---NTKVGHVTCMAFSP---NSGYLAV 499 (514)
T ss_pred hhhhhheeeeeeeeC--cchhhhhhhhhccccceEEEeccceeeeccCC--CC---CCcccceEEEEecC---CCceEEe
Confidence 777666777777777 99999987764 6789998887765554432 11 23346799999999 6679999
Q ss_pred eCCCCcEEEEEec
Q 017773 347 GGSDGLLHVFVGK 359 (366)
Q Consensus 347 ~~~dg~i~iw~~~ 359 (366)
|..+|.+.+|.+.
T Consensus 500 GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 500 GNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceeeEeec
Confidence 9999999999874
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-28 Score=187.16 Aligned_cols=246 Identities=15% Similarity=0.161 Sum_probs=198.3
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC--CCcEEEeeCCC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD--DGTMQMWDPRC 174 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--dg~v~~~d~~~ 174 (366)
...|+++.|+++ |.+|++++.|.++++||..++++..++..++- .+..++|......+ +.++. |.+|+..++.
T Consensus 14 ~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Fth~~~~~-i~sStk~d~tIryLsl~- 88 (311)
T KOG1446|consen 14 NGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFTHHSNTV-IHSSTKEDDTIRYLSLH- 88 (311)
T ss_pred CCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEecCCceE-EEccCCCCCceEEEEee-
Confidence 467999999999 99999999999999999999999999887766 78888998877777 44554 8899999999
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCC
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTD 253 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 253 (366)
+.+.++.+. +|...|.+++.+|-+ ..+++++.|++|++||+|.. ++...+..... ..++|. .|-++|++...
T Consensus 89 -dNkylRYF~--GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 -DNKYLRYFP--GHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDPEGLIFALANGS 161 (311)
T ss_pred -cCceEEEcC--CCCceEEEEEecCCC-CeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECCCCcEEEEecCC
Confidence 889999988 888999999999988 89999999999999999976 45555543333 346787 77788888877
Q ss_pred CcEEEEecCCC--ceeeeeecc-cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 254 GCLKLWNVNDS--RVIRTYKGH-VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 254 ~~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
+.|++||++.. .+..++... ......-.+.|+|||++|+.+...+.+++.|.-+|.....+...+ .+ ..--.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~----~~-~~~~~ 236 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP----NA-GNLPL 236 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc----CC-CCcce
Confidence 79999999975 455555433 222233344444999999999999999999999999887776543 11 11226
Q ss_pred EEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 331 SVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+.+|+| |++++++|+.||+|++|+++++.
T Consensus 237 ~a~ftP---ds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 237 SATFTP---DSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred eEEECC---CCcEEEEecCCCcEEEEEcCCCc
Confidence 788999 89999999999999999998754
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.1e-28 Score=207.92 Aligned_cols=309 Identities=21% Similarity=0.265 Sum_probs=242.5
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
..+.....|+..++++++.... +.+.|+++.-+|--..+|.|..+|+|.|++++.++... .+...
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~----~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~---sFk~d-------- 243 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQE----FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM---SFKQD-------- 243 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecc----cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE---EEEcc--------
Confidence 4566778899999999887753 68999999999999999999999999999999876654 33222
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee-cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD-EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
.++|++++|.-| ....+++|+..|.+.+||++..+.+.... .|.+ .|....|.|..+.+ ++++.|+.+++|=..
T Consensus 244 --~g~VtslSFrtD-G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl-~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 --WGRVTSLSFRTD-GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVL-VTAGADNSLKVWVFD 318 (910)
T ss_pred --ccceeEEEeccC-CCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceE-eeccCCCceeEEEee
Confidence 257999999988 23567788888999999999988777766 4544 88999999865555 888888888776443
Q ss_pred CCCCce-------------------------------------------------------------------------e
Q 017773 174 CDGGKC-------------------------------------------------------------------------V 180 (366)
Q Consensus 174 ~~~~~~-------------------------------------------------------------------------~ 180 (366)
+..+.+ +
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 111100 0
Q ss_pred EeecCC-----------------------------------------CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEec
Q 017773 181 STVQPS-----------------------------------------ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 181 ~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 219 (366)
..+... .....+++++.++.| ++.+.|...|.|-+|++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNM 477 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEc
Confidence 000000 001346788888888 88999999999999999
Q ss_pred CCCCCCeeEe---ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce-----------------------------
Q 017773 220 RKMVDPVLVF---DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV----------------------------- 266 (366)
Q Consensus 220 ~~~~~~~~~~---~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~----------------------------- 266 (366)
+++ -....+ ..|.++|+.++.. -++.+++++.+|.+.+||..+..+
T Consensus 478 QSG-i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 478 QSG-IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred ccC-eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 987 455555 5799999999998 778999999999999999875432
Q ss_pred ------------eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEe
Q 017773 267 ------------IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCW 334 (366)
Q Consensus 267 ------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 334 (366)
++.|.+|.+.++.++|+ |||++|++++.|++|++||+.++..+..+.+ ..+..++.|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS--~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d~~~~sls~ 625 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFS--PDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSPCTSLSF 625 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeC--CCCcEEEEeecCCcEEEEeccCcceeeeEec---------CCcceeeEE
Confidence 24455788888877777 9999999999999999999999999987754 467899999
Q ss_pred eccCCCceEEEEeCCC-CcEEEEEec
Q 017773 335 RRVGEDECTLVAGGSD-GLLHVFVGK 359 (366)
Q Consensus 335 ~~~~~~~~~l~s~~~d-g~i~iw~~~ 359 (366)
+| +|.+||+...| .-|++|.-+
T Consensus 626 SP---ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 626 SP---NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CC---CCCEEEEEEecCceEEEEEch
Confidence 99 88899999988 569999754
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=195.57 Aligned_cols=256 Identities=19% Similarity=0.295 Sum_probs=195.7
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC------------------ceeEeeecCCCCceeeEEec
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK------------------VPIFERDEHGGRRVWSVDYS 151 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~~~~~~v~~i~~~ 151 (366)
..++..|.+++.+.+|+|+ |.++++|+.|..|+|.|++.. -.++++..|.+ +|+++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec
Confidence 3467788899999999999 999999999999999998621 23566777877 99999999
Q ss_pred cCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE---
Q 017773 152 KGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV--- 228 (366)
Q Consensus 152 ~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--- 228 (366)
|....| ++|+.|++|++||+... ...+.++......+|.++.|+|.| .++++|..-..+++||+++. ++...
T Consensus 182 Pre~IL-iS~srD~tvKlFDfsK~--saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~-QcfvsanP 256 (430)
T KOG0640|consen 182 PRETIL-ISGSRDNTVKLFDFSKT--SAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTY-QCFVSANP 256 (430)
T ss_pred chhheE-EeccCCCeEEEEecccH--HHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccce-eEeeecCc
Confidence 987766 99999999999999833 222333332344599999999998 89999999999999999986 33322
Q ss_pred eecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 229 FDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 229 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
-..|.+.|+++.++ .+++.++++.||.|++||--+++++.++.. |.+. ...+.-|..+++++++.+.|..+++|.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 24588999999999 999999999999999999999999999864 4433 33444455999999999999999999999
Q ss_pred cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC-CCcEEEEEecc
Q 017773 307 WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS-DGLLHVFVGKK 360 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~ 360 (366)
++.++..+.-... .+....-+...|+. ...+++.-.+ .+.+.-||.++
T Consensus 336 t~R~l~~YtGAg~---tgrq~~rtqAvFNh---tEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 336 TGRMLKEYTGAGT---TGRQKHRTQAVFNH---TEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred CCceEEEEecCCc---ccchhhhhhhhhcC---ccceEEccccccCceeeccccc
Confidence 9999987742211 11112233445555 3335554433 35567777655
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=202.29 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=196.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
..++|+++.|.++++.+++++.|+.+++|++...+... ++ .+|...|+++.|... ...+++|+.|
T Consensus 218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TL----------sGHtdkVt~ak~~~~--~~~vVsgs~D 282 (459)
T KOG0288|consen 218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TL----------SGHTDKVTAAKFKLS--HSRVVSGSAD 282 (459)
T ss_pred cCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---hh----------cccccceeeehhhcc--ccceeecccc
Confidence 56789999999999999999999999999999876655 33 445678999999987 6669999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
.+|++||+....+..++.... .+.+|..+ ...+++|..|++|++||.+ ...+...+...+ .|+++..+++
T Consensus 283 RtiK~WDl~k~~C~kt~l~~S--~cnDI~~~---~~~~~SgH~DkkvRfwD~R--s~~~~~sv~~gg---~vtSl~ls~~ 352 (459)
T KOG0288|consen 283 RTIKLWDLQKAYCSKTVLPGS--QCNDIVCS---ISDVISGHFDKKVRFWDIR--SADKTRSVPLGG---RVTSLDLSMD 352 (459)
T ss_pred chhhhhhhhhhheeccccccc--cccceEec---ceeeeecccccceEEEecc--CCceeeEeecCc---ceeeEeeccC
Confidence 999999999988877765554 56777775 3345999999999999999 788888887544 9999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecc----cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH----RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
+ ..+++++.|.++.+.|+++. .....+... ....+.+.|+ ++.|+++|+.||.|+||++.++++...+.....
T Consensus 353 g-~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s 430 (459)
T KOG0288|consen 353 G-LELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS 430 (459)
T ss_pred C-eEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC
Confidence 8 67777799999999999997 566665432 1347889999 999999999999999999999999998887655
Q ss_pred e--eeeEEEEEecCCCeEEEecCCCeEEEE
Q 017773 276 N--RNFVGLSVWRHGGLLGCGSETNQVFVY 303 (366)
Q Consensus 276 ~--~~~~~~~~~~~~~~l~~~~~dg~i~iw 303 (366)
+ |.+++|. |.|..|++++.++.+.+|
T Consensus 431 ~~aI~s~~W~--~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 NAAITSLSWN--PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CcceEEEEEc--CCCchhhcccCCcceEec
Confidence 5 5555555 999999999999999998
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.8e-29 Score=220.99 Aligned_cols=259 Identities=19% Similarity=0.204 Sum_probs=207.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccc-----eeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHP-----VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|.+.|+|+.|+|||++||+|+.|+.|.||+......... -.....+-+.+..+.+|+..|..++|+|+ +.+|+
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lv 145 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLV 145 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEE
Confidence 999999999999999999999999999999874100000 01122334456678899999999999999 99999
Q ss_pred EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC----CCCCC
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS----ASRSA 191 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~----~~~~~ 191 (366)
+++.|++|.+||..+.+.+..+.+|.. .|..+.|.|-|+++ ++-+.|++|++|++. +....+.+..+ .....
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~-ASqsdDrtikvwrt~--dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYF-ASQSDDRTLKVWRTS--DWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred EecccceEEEEccccceeeeeeecccc-cccceEECCccCee-eeecCCceEEEEEcc--cceeeEeeccchhhCCCcce
Confidence 999999999999999999999999998 99999999999998 999999999999977 55555555432 22346
Q ss_pred eEEEEEcCCCCcEEEEEec----CCeEEEEecCCCCCCeeEeecccCcEEEEEEc------CCC------------EEEE
Q 017773 192 VCCVEFHPFGSSLVAAGCA----DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL------DVD------------TLVT 249 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------~~~------------~l~~ 249 (366)
...+.|+||| .+|++... -.++.|.+-.+. +.-..+-+|.+++.++.|+ +.+ .+++
T Consensus 222 f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 222 FLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred eeecccCCCc-CeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 7889999999 78887532 346778877655 5667788999999999995 122 6789
Q ss_pred EeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 250 AGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 250 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
|+.|++|.||.....+++..+..-. .-..+.++|+|||..|++++.||+|.++.++..
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999999998888876654211 123455556699999999999999999998754
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3e-28 Score=196.20 Aligned_cols=259 Identities=17% Similarity=0.217 Sum_probs=211.4
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCC
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPA 98 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
..+.++...+.++... .+|...|+.+.|+|+...+++++.|-.|+||......... ....|.+
T Consensus 242 ~av~~d~~s~q~l~~~----~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-------------~~~~h~~ 304 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATL----KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-------------SSRPHEE 304 (506)
T ss_pred ceEEEecchhhhhhhc----cCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-------------ccccccc
Confidence 5555665555554333 3599999999999999999999999999999987654332 3456778
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecC-CCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEH-GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
+|+.+..+|. |+||++++.|++..+.|+.++..+...... .+-.+++.+|+|||-.+ .+|..||.|++||+. ++
T Consensus 305 ~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif-gtgt~d~~vkiwdlk--s~ 379 (506)
T KOG0289|consen 305 PVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF-GTGTPDGVVKIWDLK--SQ 379 (506)
T ss_pred cceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE-eccCCCceEEEEEcC--Cc
Confidence 9999999999 999999999999999999999877665543 22368999999998766 999999999999999 66
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
..+..+. +|.++|..++|+.+| .++++++.|+.|++||+|.. +...++.. ...++.++.|. .|.+|+.++.|=+
T Consensus 380 ~~~a~Fp--ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 380 TNVAKFP--GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred cccccCC--CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 6666665 799999999999999 99999999999999999987 45555443 33479999998 8999999988777
Q ss_pred EEEEecC--CCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 256 LKLWNVN--DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 256 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
|++++-. +...+..+..|.+..+.+.|. ...+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg--~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFG--EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeec--ccceEEeeccchhheEEeec
Confidence 7777643 457788888888777778777 88899999999998888754
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=6.1e-29 Score=203.82 Aligned_cols=284 Identities=17% Similarity=0.219 Sum_probs=229.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|.+-|.++.+|...+.+.||+. |.|+|||+...........+.-.. ....|.++...|+ |+.|++|+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--------rdnyiRSckL~pd--grtLivGGe 485 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--------RDNYIRSCKLLPD--GRTLIVGGE 485 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--------cccceeeeEecCC--CceEEeccc
Confidence 39999999999999999999985 789999998653333222221111 1346899999999 999999999
Q ss_pred CCcEEEEeCCCCceeE--eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 120 DGVVMEYDLEKKVPIF--ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
-.++.|||+....+.. ++..... ...+++.+||.+.. +++..||.|.|||+. ....++.++ +|.+.+.|+..
T Consensus 486 astlsiWDLAapTprikaeltssap-aCyALa~spDakvc-FsccsdGnI~vwDLh--nq~~Vrqfq--GhtDGascIdi 559 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDAKVC-FSCCSDGNIAVWDLH--NQTLVRQFQ--GHTDGASCIDI 559 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcch-hhhhhhcCCcccee-eeeccCCcEEEEEcc--cceeeeccc--CCCCCceeEEe
Confidence 9999999998765433 2332222 67789999998877 788889999999999 777788777 88999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccce
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN 276 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (366)
+++| ..|-+|+-|++|+.||++++.++ ... .....|.++..+ .+++++.|-.++.+.+......+ ...+..|..-
T Consensus 560 s~dG-tklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheSc 635 (705)
T KOG0639|consen 560 SKDG-TKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESC 635 (705)
T ss_pred cCCC-ceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccE
Confidence 9999 89999999999999999998433 222 245788899888 89999999999999888765443 3456667777
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
|..+.|+ +.|+++++.+.|+.+..|...-|..++..+ ....|.++..+. |.+++++|+.|..-.||
T Consensus 636 VLSlKFa--~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~---ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 636 VLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISF---DDKYIVTGSGDKKATVY 701 (705)
T ss_pred EEEEEec--ccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeecc---CceEEEecCCCcceEEE
Confidence 7667766 999999999999999999999888876653 467899999998 88899999999988888
Q ss_pred Ee
Q 017773 357 VG 358 (366)
Q Consensus 357 ~~ 358 (366)
.+
T Consensus 702 eV 703 (705)
T KOG0639|consen 702 EV 703 (705)
T ss_pred EE
Confidence 76
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-29 Score=187.08 Aligned_cols=251 Identities=20% Similarity=0.305 Sum_probs=199.4
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC---ceeEeeecCCCCceeeEEecc--CCCceEEEecCCCcEEE
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK---VPIFERDEHGGRRVWSVDYSK--GDPVLGASGSDDGTMQM 169 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~dg~v~~ 169 (366)
.|...|..+...-- |.+|++++.|++|+|+....+ +.+.++.+|.+ ||+.++|.. .|..| ++++.||.|.|
T Consensus 9 ~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-PVwqv~wahPk~G~iL-AScsYDgkVIi 84 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-PVWKVAWAHPKFGTIL-ASCSYDGKVII 84 (299)
T ss_pred hhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-CeeEEeecccccCcEe-eEeecCceEEE
Confidence 34556777666655 999999999999999998765 46788999998 999999965 46655 99999999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC-cEEEEEecCCeEEEEecCCC--CCCeeEeecccCcEEEEEEc----
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS-SLVAAGCADKKAYAYDVRKM--VDPVLVFDGHRKTVTYIRFL---- 242 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~---- 242 (366)
|.-. .++-.+......|...|++++|.|.+. .+|++++.||.|.+++.+.. .........|.-.|++++|.
T Consensus 85 Wke~--~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 85 WKEE--NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EecC--CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9988 565555555568889999999999752 67899999999999998865 12344567899999999996
Q ss_pred CC-----------CEEEEEeCCCcEEEEecCCC--ceeeeeecccceeeeEEEEEec--CCCeEEEecCCCeEEEEEeec
Q 017773 243 DV-----------DTLVTAGTDGCLKLWNVNDS--RVIRTYKGHVNNRNFVGLSVWR--HGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 243 ~~-----------~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+| +.|++|+.|..|+||+..++ +...++.+|...++.++++++- --.+|++++.||++.||..+.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 23 56999999999999999875 4556689999999999999322 235899999999999998873
Q ss_pred CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 308 GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
....+...+ +......+..+.|++ .|+.|+.++.|+.|.+|.-.
T Consensus 243 e~e~wk~tl-----l~~f~~~~w~vSWS~---sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 243 EYEPWKKTL-----LEEFPDVVWRVSWSL---SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCcccccc-----cccCCcceEEEEEec---cccEEEEecCCcEEEEEEeC
Confidence 322222211 122457899999999 88899999999999999754
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=198.95 Aligned_cols=267 Identities=16% Similarity=0.250 Sum_probs=219.7
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceece
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
+..+.++.+..|+...+....... .|.+.|..+++.. ..+++++.|.+|+.|.++.. ...+..+.
T Consensus 83 aSGs~DG~VkiWnlsqR~~~~~f~----AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~----p~~tilg~----- 147 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQRECIRTFK----AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP----PLHTILGK----- 147 (433)
T ss_pred hccccCceEEEEehhhhhhhheee----cccCceeeEEecc--cceEEecCCcceeeeeccCC----cceeeecc-----
Confidence 445678899999999887765543 4999999999988 56888899999999998763 11122222
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
+.+..+.-+.. +..++|++. .|.|||.+...++..+.-..+ .|.++.|+|....+|++|..|+.|.|||
T Consensus 148 ------s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 148 ------SVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred ------ccccccccccc--cccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCCceEEEe
Confidence 34667777666 778888875 599999999999999988887 8999999999999989999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
++ ...+++.+...- ..+.++|+|.+ ..+++|.+|..++.||++....++....+|...|.+++|+ .|+.|++|
T Consensus 217 ~R--~~~Pl~KVi~~m---RTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 217 LR--QASPLKKVILTM---RTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred cc--cCCccceeeeec---cccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 99 777777776443 67789999976 8899999999999999999989999999999999999999 99999999
Q ss_pred eCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
+.|.+|+||..+.+..-..+.. .-..|.++.|+ .|.+++++|++|+.|++|.....+.+.
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S--~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS--MDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEe--ccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999988765544432 12345566666 999999999999999999987554443
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=6.5e-27 Score=197.45 Aligned_cols=272 Identities=14% Similarity=0.107 Sum_probs=198.4
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCc
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~ 132 (366)
++++++++.|+.|++||+.+++... .+..+ ..+.+++|+|+ +..+ ++++.++.|++||..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~-----------~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVG-----------QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECC-----------CCCCceEECCC--CCEEEEEECCCCeEEEEECCCCc
Confidence 3578899999999999998765332 22222 23678999998 8766 567788999999999988
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
....+..+. .+..++|+|+++.+++++..++.+++||++ +.+.+..+... ..+.+++|+|++ .+++++..++
T Consensus 65 ~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~--~~~~~~~~~~~---~~~~~~~~~~dg-~~l~~~~~~~ 136 (300)
T TIGR03866 65 VIGTLPSGP--DPELFALHPNGKILYIANEDDNLVTVIDIE--TRKVLAEIPVG---VEPEGMAVSPDG-KIVVNTSETT 136 (300)
T ss_pred EEEeccCCC--CccEEEECCCCCEEEEEcCCCCeEEEEECC--CCeEEeEeeCC---CCcceEEECCCC-CEEEEEecCC
Confidence 777666544 456889999999886677778999999998 66666665422 256889999998 6777776664
Q ss_pred -eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE-EeCCCcEEEEecCCCceeeeeeccc-----ceeeeEEEEE
Q 017773 213 -KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT-AGTDGCLKLWNVNDSRVIRTYKGHV-----NNRNFVGLSV 284 (366)
Q Consensus 213 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~ 284 (366)
.+..||.++. +...... .......++|+ ++++|++ +..++.|++||+++++.+..+..+. .......+.+
T Consensus 137 ~~~~~~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 137 NMAHFIDTKTY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred CeEEEEeCCCC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 5777898775 3333332 23345778898 8887754 4569999999999998777665321 1222334555
Q ss_pred ecCCCeEEE-ecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe-CCCCcEEEEEecccC
Q 017773 285 WRHGGLLGC-GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG-GSDGLLHVFVGKKKP 362 (366)
Q Consensus 285 ~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~ 362 (366)
+|++++++. .+.++.+.+||+++++...... +...+.+++|+| +|++|+++ +.+|.|++||+++..
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---------VGQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---------eCCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCc
Confidence 699998554 4556789999999887765432 234688999999 88888876 569999999998865
Q ss_pred C
Q 017773 363 L 363 (366)
Q Consensus 363 l 363 (366)
+
T Consensus 283 ~ 283 (300)
T TIGR03866 283 V 283 (300)
T ss_pred E
Confidence 3
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=211.22 Aligned_cols=240 Identities=21% Similarity=0.327 Sum_probs=201.9
Q ss_pred EEEEecCCCCcEEEEEcCCCcEEEEeCCCCc------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 102 SLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
.+..+.. .+++|++|+.||.|++|+..... ....++.|.+ .|..+....+++.+ ++++.|-+|++|+....
T Consensus 29 ~Lq~da~-~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~~~~~tl-IS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAP-NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILCGNGKTL-ISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCC-CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhhcCCCce-EEecCCceEEEeecccC
Confidence 3444433 37789999999999999986532 2556777777 99999999888887 99999999999999832
Q ss_pred CCceeEeecCCCCCCCeEEEEE-cCCCCcEEEEEecCCeEEEEecCCCCC---------CeeEee-cccCcEEEEEEc-C
Q 017773 176 GGKCVSTVQPSASRSAVCCVEF-HPFGSSLVAAGCADKKAYAYDVRKMVD---------PVLVFD-GHRKTVTYIRFL-D 243 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~-~~~~~v~~~~~~-~ 243 (366)
..-+..++. .|.+.|.|+++ .++. .++|+|+-|+.|.+||++++.. ....+. ++..+|++++.+ .
T Consensus 106 ~~~c~stir--~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 106 NTFCMSTIR--THKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred cchhHhhhh--cccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 224555555 78889999999 6654 8999999999999999996622 122233 788899999998 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccC
Q 017773 244 VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
+..+++|+..+.+++||.++.+.+..+++|...|.++-+. +||..+++++.||+|++||+...+++..+ .
T Consensus 183 ~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~--dDGt~~ls~sSDgtIrlWdLgqQrCl~T~--------~ 252 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN--DDGTRLLSASSDGTIRLWDLGQQRCLATY--------I 252 (735)
T ss_pred ceEEEecCcccceEEeccccccceeeeeccccceEEEEEc--CCCCeEeecCCCceEEeeeccccceeeeE--------E
Confidence 8899999999999999999999999999999999999888 99999999999999999999988888876 4
Q ss_pred CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 324 SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 324 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.|...|+++..+| +-..+++|+.||.|..=++++
T Consensus 253 vH~e~VWaL~~~~---sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 253 VHKEGVWALQSSP---SFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eccCceEEEeeCC---CcceEEecCCCCcEEecccCC
Confidence 5788899999998 667999999999998888776
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.2e-29 Score=184.86 Aligned_cols=253 Identities=18% Similarity=0.261 Sum_probs=196.0
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|++.|..+...--|+.|||++.|++|+|+.+.+..... ....+.+|.+||..++|.....|.+||+++.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------LLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------eeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 389999999999999999999999999999988754433 2334566778999999976446999999999
Q ss_pred CCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCC-CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 120 DGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGD-PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 120 dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
||.|.||.-+.++ ...+...|.. .|++++|-|.+ ..+|++++.||.|.+.+.+.. +..........|...|++++
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceee
Confidence 9999999998874 3445566776 99999999974 344589999999999999844 23333333347888999999
Q ss_pred EcCC---C----------CcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEc-----CCCEEEEEeCCCcEE
Q 017773 197 FHPF---G----------SSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFL-----DVDTLVTAGTDGCLK 257 (366)
Q Consensus 197 ~~~~---~----------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~d~~i~ 257 (366)
|.|. | .+.|++|+.|..|+||+..... ..-..+.+|.+.|+.++|. ...++++++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9986 2 1469999999999999998752 2334588999999999996 345899999999999
Q ss_pred EEecCCC-c--eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 258 LWNVNDS-R--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 258 iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
||..+.. + ....++.....+..++|+ ..|+.|+.++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS--~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWS--LSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEe--ccccEEEEecCCcEEEEEEeC
Confidence 9987632 1 111122233345555555 899999999999999999865
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.4e-26 Score=187.79 Aligned_cols=320 Identities=17% Similarity=0.263 Sum_probs=237.1
Q ss_pred ccCCCCCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeee
Q 017773 4 FHDHQQPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAV 83 (366)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 83 (366)
|+....++....++.....|++.++.+.....-..-..+..|.|++|.++|. ++||..+|.|.||+..+.+..+
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k----- 281 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK----- 281 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe-----
Confidence 4555577888899999999999988876554333223457899999999995 8899999999999985533222
Q ss_pred ecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-----------eeE-----------------
Q 017773 84 VDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-----------PIF----------------- 135 (366)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~----------------- 135 (366)
....|++.|.+++...+ |.+|- |+.|..|..||-+-.+ .++
T Consensus 282 --------~~~aH~ggv~~L~~lr~--GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 282 --------QVHAHDGGVFSLCMLRD--GTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred --------EeeecCCceEEEEEecC--ccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 12267889999999997 76655 9999999999832110 000
Q ss_pred ------------eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 136 ------------ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 136 ------------~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
...+|.+ ..+.++.+|+.+.+ ++++.|+.+++|+ . .++....... .++.|+.|+|.|
T Consensus 351 iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~-~T~gqdk~v~lW~-~---~k~~wt~~~~---d~~~~~~fhpsg-- 419 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQL-LTCGQDKHVRLWN-D---HKLEWTKIIE---DPAECADFHPSG-- 419 (626)
T ss_pred EEEeeecCCceEEEEeccc-ceeeEEcCCChhhe-eeccCcceEEEcc-C---CceeEEEEec---CceeEeeccCcc--
Confidence 2234555 78889999988877 9999999999999 3 4455444432 389999999987
Q ss_pred EEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecc-cceeeeE
Q 017773 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGH-VNNRNFV 280 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~~~~~~ 280 (366)
.++.|+..|...+.|.++. ..+..-.. +.++++++|+ +|.+|+.|+.|+.|++|.+... ........+ ..+++.+
T Consensus 420 ~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL 497 (626)
T ss_pred eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe
Confidence 8999999999999999985 44444444 8999999999 9999999999999999998764 333333322 2455555
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEeecCceE-------------------------------------------------
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDVRWGEPV------------------------------------------------- 311 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------------------- 311 (366)
.|+ +|+++|.+-+.|-.|..|.....+.+
T Consensus 498 DwS--~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 498 DWS--SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred eec--CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 554 99999999999999999943211110
Q ss_pred EEEecc------cccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 312 WVHDFE------PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 312 ~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
..+.++ +.....+|.+.|++++|.- +.+.|++.+.|.+|..|++
T Consensus 576 ~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~---~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 576 HLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC---KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEccccCCCcccceeeccccceeEEEEEee---CCceEEecCCCceEEEEEe
Confidence 011111 1234578999999999998 6668888889999999986
No 117
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9e-27 Score=201.82 Aligned_cols=325 Identities=14% Similarity=0.175 Sum_probs=242.9
Q ss_pred cccccccceeeeeecCCC-ceeeecCCCCc--cCCCceEEEEECCCC--CEEEEeecCCeEEEEEceecccccceeeeec
Q 017773 11 QAETTNERARCEWDFNLR-TTVSSSSSPNA--AVSDSIGVIEFDPSD--SVFATGGIARKIRIYNIKSVLVDHPVVAVVD 85 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~--~h~~~i~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 85 (366)
+.+...+.....|...+. ... ....... .+.. |+++. +|.- +.++.|+.+|.+.||++.+++... ++.+
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~-~l~~~~~~~~~~~-Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~---~f~~ 200 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEEL-YLQSTFLKVEGDF-ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVY---TFQE 200 (910)
T ss_pred EEEEEccCcEEEEEeccccccc-cccceeeeccCCc-eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEE---Eecc
Confidence 334445666777877663 111 0001111 1233 77764 5643 678999999999999999988766 4444
Q ss_pred CceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 86 HSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
+ ...|+++.=+|- -+.++.|..+|+|.++|+..++.+.+++...+ +|++++|..||+.++++|+..|
T Consensus 201 ~----------~s~IT~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g-~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 201 F----------FSRITAIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWG-RVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred c----------ccceeEeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEcccc-ceeEEEeccCCCeeEEeccCCc
Confidence 3 357999999998 89999999999999999999999999988755 9999999999999999999999
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC----------------------
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV---------------------- 223 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------- 223 (366)
.+.+||++ ..+....+ ...|.+.+....|.|.. .++++.+.|+.+++|=.+++.
T Consensus 268 ~m~~wDLe--~kkl~~v~-~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 268 DMAFWDLE--KKKLINVT-RNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred eEEEEEcC--CCeeeeee-eccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 99999998 44443333 33566677777777754 677777777776655322100
Q ss_pred -------------------------------C---------------------CeeE--------------e--------
Q 017773 224 -------------------------------D---------------------PVLV--------------F-------- 229 (366)
Q Consensus 224 -------------------------------~---------------------~~~~--------------~-------- 229 (366)
+ ++.. +
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 0 0000 0
Q ss_pred ---------------eccc------CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee---ecccceeeeEEEEE
Q 017773 230 ---------------DGHR------KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY---KGHVNNRNFVGLSV 284 (366)
Q Consensus 230 ---------------~~~~------~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 284 (366)
-.+. ..+++++.+ .|++.+.|...|.|-+|++.+|-...++ ..|..+|+.+++.
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D- 502 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD- 502 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec-
Confidence 0011 456777777 7889999999999999999999888888 5799999888887
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceEEEEeccc---------------------------------ccccCCCCceeeE
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP---------------------------------VTAAGSERGFVSS 331 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~v~~ 331 (366)
.-++.+++++.+|.+.+||..+..++..+.+.. ...+.+|.+.|++
T Consensus 503 -~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 503 -GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred -CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 778899999999999999998776444332211 2345789999999
Q ss_pred EEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 332 VCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 332 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
++||| ||+.|++++.|++|++||+.++.+
T Consensus 582 ~~FS~---DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 582 MTFSP---DGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eEeCC---CCcEEEEeecCCcEEEEeccCcce
Confidence 99999 999999999999999999987543
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=4.3e-28 Score=204.13 Aligned_cols=294 Identities=19% Similarity=0.263 Sum_probs=216.1
Q ss_pred EEEEECCC---CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 46 GVIEFDPS---DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 46 ~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
.+..|++. ...||.+..||.|.++|........ .........+|...|..+.|-|. ...|++++.|.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-------ee~~lk~~~aH~nAifDl~wapg--e~~lVsasGDsT 123 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-------EERQLKKPLAHKNAIFDLKWAPG--ESLLVSASGDST 123 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcch-------hhhhhcccccccceeEeeccCCC--ceeEEEccCCce
Confidence 45677763 3689999999999999987643321 11112234577889999999997 889999999999
Q ss_pred EEEEeCCCCceeEe--eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc------------------eeEe
Q 017773 123 VMEYDLEKKVPIFE--RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK------------------CVST 182 (366)
Q Consensus 123 i~iw~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~------------------~~~~ 182 (366)
+++||+++++.+.. +.+|.. .|.+++|.|.++.+|++|+.||.+.|||++..... +...
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 99999999988776 888988 99999999999999999999999999999832200 0000
Q ss_pred ec-----CCCCCCC----eEEEEEcCCCCcEEEEEec-CCeEEEEecCCCCCC-------eeEeecc---cCcEEEEEEc
Q 017773 183 VQ-----PSASRSA----VCCVEFHPFGSSLVAAGCA-DKKAYAYDVRKMVDP-------VLVFDGH---RKTVTYIRFL 242 (366)
Q Consensus 183 ~~-----~~~~~~~----i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~-------~~~~~~~---~~~v~~~~~~ 242 (366)
.. ...+... |+.+.| .|. ..||+++. |+.|++||+++.... ...+..| ...+.++...
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~f-kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLF-KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred hhccccccccccCceeeeeEEEEE-ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 00 0012223 444444 444 57777666 999999999976221 1122223 2346666665
Q ss_pred -CCCEEEEEeCCCcEEEEecCCC--ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccc
Q 017773 243 -DVDTLVTAGTDGCLKLWNVNDS--RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 243 -~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
.|.+|++.+.|+.|++|++.+. .++..+.++...-..+.-..+|++.++++|+.|...++|.+.+.+.- .
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-------~ 353 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP-------P 353 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC-------h
Confidence 7788888888999999999875 56666776655545555556799999999999999999999876543 2
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..+.+|...|++++|.|.. .. -++++++|-.++||++..
T Consensus 354 ~~l~Ght~eVt~V~w~pS~-~t-~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSA-TT-PVATCSDDFRVKIWRLSN 392 (720)
T ss_pred hhhhCcceEEEEEeecccc-CC-CceeeccCcceEEEeccC
Confidence 3347899999999999854 22 467779999999999865
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-28 Score=188.50 Aligned_cols=280 Identities=15% Similarity=0.202 Sum_probs=223.6
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEcee----cc--ccc----------
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKS----VL--VDH---------- 78 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~----~~--~~~---------- 78 (366)
..+.+.+.|+.+++..+.... +|.+.|++++|++.+.+++|++.|++-.||...- ++ ...
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~----GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYT----GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred ccccceeEEeeccccceeeec----ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 457888999999998876553 5999999999999999999999999999998321 11 000
Q ss_pred -----c----eeeeecCc--eeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceee
Q 017773 79 -----P----VVAVVDHS--KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS 147 (366)
Q Consensus 79 -----~----~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 147 (366)
+ .....+|. -+...+.+|.+.|.+..|... |+.+++++.|.+..+||+++++.+..+.+|.. ..+.
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtH 319 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTH 319 (481)
T ss_pred ccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--cceeeeeeccccceeeeeccCceeccccCcch-hccc
Confidence 0 00011111 122356789999999999998 99999999999999999999999999999998 8999
Q ss_pred EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee
Q 017773 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 148 i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 227 (366)
++-+|..+. +++++.|.+.++||++ +.-..+..++ +|...|+++.|..+. .+++|+.|.+|++||++++..++.
T Consensus 320 cstHptQrL-VvTsSrDtTFRLWDFR-eaI~sV~VFQ--GHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 320 CSTHPTQRL-VVTSSRDTTFRLWDFR-EAIQSVAVFQ--GHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred cccCCcceE-EEEeccCceeEeccch-hhcceeeeec--ccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcce
Confidence 999996555 4999999999999999 3445555665 899999999999864 789999999999999999988888
Q ss_pred EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCcee----eeeecccceeeeEEEEEecCCCeEEEecCCCeEEE
Q 017773 228 VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVI----RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302 (366)
Q Consensus 228 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 302 (366)
++. ...+++.++.+ .+..++.--.+..|++||+...++. ..-++|..-+.+++|.-.+--.-|++++.|..+.-
T Consensus 394 TIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 394 TIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred eee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence 887 46789999999 6668888888889999999654322 23457888888888873333456788999999999
Q ss_pred EEeecC
Q 017773 303 YDVRWG 308 (366)
Q Consensus 303 wd~~~~ 308 (366)
|++...
T Consensus 473 W~in~p 478 (481)
T KOG0300|consen 473 WKINTP 478 (481)
T ss_pred eEeccc
Confidence 998643
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=197.53 Aligned_cols=259 Identities=23% Similarity=0.291 Sum_probs=200.1
Q ss_pred ceEEEEECC-------CCCEEEEeecCCeEEEEEceecccccceeeeecCc--------eeceeeeecCCceeEEEEecC
Q 017773 44 SIGVIEFDP-------SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHS--------KVCDYYICTPAKLSSLKWKPG 108 (366)
Q Consensus 44 ~i~~~~~s~-------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~ 108 (366)
...|++|.. .|+|+|.|+.|..|.|||+.-.....+...+.... +......+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666653 25799999999999999987654443333332111 011123468889999999986
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC
Q 017773 109 TSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS 188 (366)
Q Consensus 109 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~ 188 (366)
-...||+|+.|.+|++||+.++++...+..|.+ +|.++.|+|....++++|+.|++|.+.|.+. ....-..++..
T Consensus 255 -~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~-~~~s~~~wk~~-- 329 (463)
T KOG0270|consen 255 -FRNVLASGSADKTVKLWDVDTGKPKSSITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRD-PSNSGKEWKFD-- 329 (463)
T ss_pred -cceeEEecCCCceEEEEEcCCCCcceehhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccC-ccccCceEEec--
Confidence 367999999999999999999999999987777 9999999999998889999999999999993 23333344433
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCce
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRV 266 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~ 266 (366)
+.|-.++|.|.....++++..||+|+-+|+|...+++.++..|.++|.+++++ ...++++++.|+.|++|++....+
T Consensus 330 -g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 330 -GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred -cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 38999999999888999999999999999999989999999999999999998 667899999999999999875543
Q ss_pred eeeeeccc---ceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceE
Q 017773 267 IRTYKGHV---NNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 267 ~~~~~~~~---~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
-... .|. +...+.++. |+- -.++.|+..+.++|||+.+..++
T Consensus 409 ~~v~-~~~~~~~rl~c~~~~--~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KSVK-EHSFKLGRLHCFALD--PDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccc-cccccccceeecccC--CCcceEEEecCccceEEEeecccChhH
Confidence 2111 121 122233333 543 46778888889999999877654
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=200.64 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=192.9
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc----eeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV----PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
.+.+|...|.++++.|. |-+|++|+.|.+|++||+.... ..+.+.......|.++.|++.+..+ ++.+.....
T Consensus 162 ~l~hgtk~Vsal~~Dp~--GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~i-Lvvsg~aqa 238 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPS--GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQI-LVVSGSAQA 238 (641)
T ss_pred eccCCceEEEEeeecCC--CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeE-EEEecCcce
Confidence 35567778999999999 9999999999999999997542 2333443334489999999999988 555567789
Q ss_pred EEeeCCCCCCceeEeec----------CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-----cc
Q 017773 168 QMWDPRCDGGKCVSTVQ----------PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-----GH 232 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~ 232 (366)
+|+|-. ..+.....+ ..+|...++|.+|+|.....+++++.||++++||+....+....+. +.
T Consensus 239 kl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 239 KLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999976 333333332 2378889999999999989999999999999999988755555554 23
Q ss_pred cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC--cee-eeeecccc--eeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 233 RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS--RVI-RTYKGHVN--NRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 233 ~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~--~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.-+++.++|+ +++.|++|+.||.|.+|+..+. ++. ..-..|.. .++++.|+ ++|++|++-+.|+++++||++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS--~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS--YDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec--cccchhhhccCCCceeeeecc
Confidence 4578999999 9999999999999999998654 222 23345766 67777766 999999999999999999998
Q ss_pred cCce-EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC------CCcEEEEEecc
Q 017773 307 WGEP-VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS------DGLLHVFVGKK 360 (366)
Q Consensus 307 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~ 360 (366)
+.+. +.... . -....+-+.++|+| +.++|++|.. .|.+.+||..+
T Consensus 395 q~kkpL~~~t-g-----L~t~~~~tdc~FSP---d~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 395 QFKKPLNVRT-G-----LPTPFPGTDCCFSP---DDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccccchhhhc-C-----CCccCCCCccccCC---CceEEEecccccCCCCCceEEEEeccc
Confidence 7543 33221 1 01223457899999 8889999864 46788888655
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.6e-28 Score=195.92 Aligned_cols=270 Identities=17% Similarity=0.224 Sum_probs=207.0
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCceeEeeecCCC
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEKKVPIFERDEHGG 142 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 142 (366)
.++.+||+.++.... .+.+... ..-.++..-. +.+++++. ....+.+|.+...........-.+
T Consensus 18 ~~~~~~dl~TGt~~~---~ykg~~~---------a~~~sl~~l~---~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg 82 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLL---QYKGSYL---------AQAASLTALN---NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG 82 (476)
T ss_pred cceeEEecCCCceeE---EecCccc---------ccchhhhhhc---hhheeeecccCccccccccCchhhhhhhccccc
Confidence 459999999876544 2222210 0011111111 34555554 456899999987655553333344
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC-
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK- 221 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 221 (366)
+|.+++-+|.|.++ +.|+..|.+++|.+. ++..+..+. .|-..|+|+.|+-|| .++++|+.||.|.+|++-.
T Consensus 83 -~v~al~s~n~G~~l-~ag~i~g~lYlWels--sG~LL~v~~--aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 83 -PVHALASSNLGYFL-LAGTISGNLYLWELS--SGILLNVLS--AHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred -ceeeeecCCCceEE-EeecccCcEEEEEec--cccHHHHHH--hhccceeEEEEeCCC-cEEEecCCCccEEEEEEEee
Confidence 89999999998877 777799999999999 899888885 788899999999998 8999999999999998732
Q ss_pred -------CCCCeeEeecccCcEEEEEEc---CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE
Q 017773 222 -------MVDPVLVFDGHRKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 222 -------~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
..++...+..|.-+|+.+... ...+++|++.|.++++||+..+.++.++... ..+.++++. |-++.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lD--pae~~~ 232 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALD--PAERVV 232 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEc--ccccEE
Confidence 236788899999999999986 3468999999999999999999999888753 355666666 999999
Q ss_pred EEecCCCeEEEEEeecCceE--------EEEecccccccCCCCc--eeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 292 GCGSETNQVFVYDVRWGEPV--------WVHDFEPVTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 292 ~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+.|+.+|.|.+.++...... ..........+.+|.+ .|++++.+. ||..|++|+.||.|+|||+..+
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEEeeCCCCCEEEEecchH
Confidence 99999999999988654311 1122223345578888 999999999 9999999999999999999764
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.3e-27 Score=205.33 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=214.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|....+.++|.|+|++|++++.||.|++|+......... ... .+...|.+++-. +.+|++|+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--ti~----------~~g~~v~~ia~~----s~~f~~~s~ 74 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--TID----------ISGELVSSIACY----SNHFLTGSE 74 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc--hhh----------ccCceeEEEeec----ccceEEeec
Confidence 4888999999999999999999999999999877532221 111 123457777655 569999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+++|.+|.+.+++.-..+....- ++.+++|+.+|..+ +.|+.|-.|++-++. +......+. +|.++|.++.|+|
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~i-aagsdD~~vK~~~~~--D~s~~~~lr--gh~apVl~l~~~p 148 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTL-PIRDLAVSGSGKMI-AAGSDDTAVKLLNLD--DSSQEKVLR--GHDAPVLQLSYDP 148 (933)
T ss_pred cceEEEeeCCCCCccceeeeeec-cceEEEEecCCcEE-EeecCceeEEEEecc--ccchheeec--ccCCceeeeeEcC
Confidence 99999999998876555544454 89999999999888 999999999999998 666666666 7888999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeec--------ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--------HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
++ ++||+.+.||.|++||+.++ .....+.+ ....+..++|+ ++..|+..+.|+.|++|+...++....+
T Consensus 149 ~~-~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KG-NFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CC-CEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 98 89999999999999999876 33333321 14567889999 8788899999999999999999988888
Q ss_pred eccc--ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 271 KGHV--NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 271 ~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
.... ..+.+++|+ |+|+|||+++.||.|.|||.++-+. .+ ....|.+++|.|+ +..+-.-.
T Consensus 227 r~~~~ss~~~~~~ws--PnG~YiAAs~~~g~I~vWnv~t~~~---~~---------~~~~Vc~~aw~p~---~n~it~~~ 289 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWS--PNGKYIAASTLDGQILVWNVDTHER---HE---------FKRAVCCEAWKPN---ANAITLIT 289 (933)
T ss_pred cccccccceEEEEEc--CCCcEEeeeccCCcEEEEecccchh---cc---------ccceeEEEecCCC---CCeeEEEe
Confidence 7532 334455555 9999999999999999999987322 11 2467999999994 43444444
Q ss_pred CCCcEEEE
Q 017773 349 SDGLLHVF 356 (366)
Q Consensus 349 ~dg~i~iw 356 (366)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 44444333
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=192.47 Aligned_cols=220 Identities=18% Similarity=0.329 Sum_probs=188.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-+++|.|++-+|+|.+|+.|+..|.|++|.+.++..+. .+.. |-.+|+|+.|+.| +.+|++|+.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~a----------HYQ~ITcL~fs~d--gs~iiTgskD 144 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSA----------HYQSITCLKFSDD--GSHIITGSKD 144 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHh----------hccceeEEEEeCC--CcEEEecCCC
Confidence 57889999999999999999899999999999998776 3333 4457999999999 9999999999
Q ss_pred CcEEEEeCC---------CCceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 121 GVVMEYDLE---------KKVPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 121 g~i~iw~~~---------~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
|.|.+|.+. +.++...+..|.- +|+++...+. ..++ ++++.|.++++||+. .+..+..+..+.
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl-~TaS~D~t~k~wdlS--~g~LLlti~fp~-- 218 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARL-YTASEDRTIKLWDLS--LGVLLLTITFPS-- 218 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceE-EEecCCceEEEEEec--cceeeEEEecCC--
Confidence 999999863 2357778888887 9999988765 3455 999999999999999 788888887554
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC---------------CCeeEeecccC--cEEEEEEc-CCCEEEEEe
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV---------------DPVLVFDGHRK--TVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~ 251 (366)
.+.+++.+|.+ ..+++|+.+|.|.+.++.+.. ..+..+.+|.+ .|+|++.+ |+..|++|+
T Consensus 219 -si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 219 -SIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred -cceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 89999999987 899999999999998875432 23445678888 99999999 999999999
Q ss_pred CCCcEEEEecCCCceeeeeecccceeeeEEEE
Q 017773 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
.||.++|||+.+.++++++....++|+.+.+.
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred CCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 99999999999999999998777888888875
No 125
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.96 E-value=3.3e-27 Score=183.55 Aligned_cols=291 Identities=16% Similarity=0.252 Sum_probs=217.0
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccc---eeeeecCceeceeeeecCCceeEEEEecC-----CCCcE
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHP---VVAVVDHSKVCDYYICTPAKLSSLKWKPG-----TSGRV 113 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~ 113 (366)
..-...+.|+|||..|++-+.|..+++|++........ ...+..+. .+-......|...+|-+. ++..+
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~---~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL---SYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce---eEEeccCCEEEEEEeeeccccCCCccce
Confidence 44567889999999999999999999999875322111 00111111 111122456788888521 23788
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeeecC--CC--CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC----
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERDEH--GG--RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP---- 185 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~--~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~---- 185 (366)
+++.+.+.-|++||.-+|+....+..- .+ ....+++|+|+|.+| ++| ..+.|++||+.. .+..-..+..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-faG-ykrcirvFdt~R-pGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-FAG-YKRCIRVFDTSR-PGRDCPVYTTVTKG 202 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-eec-ccceEEEeeccC-CCCCCcchhhhhcc
Confidence 999999999999999999877665432 21 145689999999998 544 578999999942 3332222211
Q ss_pred -CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CCcEEEEecC
Q 017773 186 -SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DGCLKLWNVN 262 (366)
Q Consensus 186 -~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~iwd~~ 262 (366)
.+..+-+.+++|+|.....+++|+....+-||.-... .++..+.+|.+.|+.++|. +|+.|++|+. |..|..||++
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 1335688999999998779999999999988887776 7889999999999999999 9999988875 6789999998
Q ss_pred CC-ceeeeeecccc-eeeeEEEEEecCCCeEEEecCCCeEEEEEeec-CceEEEEecccccccCCCCceeeEEEeeccCC
Q 017773 263 DS-RVIRTYKGHVN-NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 263 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
.. .++..+..|.. .-..+.|...|++++|++|+.||.|++||++. +.....+ ..+...++.++++|.-|
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~--------~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT--------GNYSDTVNGVSLNPIMP 353 (406)
T ss_pred hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc--------ccccccccceecCcccc
Confidence 64 67778877766 33456677779999999999999999999987 5544333 55788999999999655
Q ss_pred CceEEEEeCCC
Q 017773 340 DECTLVAGGSD 350 (366)
Q Consensus 340 ~~~~l~s~~~d 350 (366)
++|+++..
T Consensus 354 ---ilatssGq 361 (406)
T KOG2919|consen 354 ---ILATSSGQ 361 (406)
T ss_pred ---eeeeccCc
Confidence 77777644
No 126
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=2.7e-27 Score=184.33 Aligned_cols=298 Identities=19% Similarity=0.303 Sum_probs=232.2
Q ss_pred CCCceEEEEECC-----CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC--CCcE
Q 017773 41 VSDSIGVIEFDP-----SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT--SGRV 113 (366)
Q Consensus 41 h~~~i~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~ 113 (366)
|..+|..++|++ +...+||++. ..+.+|+................ .|++....++|+-+- ...+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~--------d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE--------DHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC--------CCCcceEEEEEEecCCCCCee
Confidence 889999999995 2357777774 57999987764422211121111 245678888887652 2568
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CCCCCCe
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SASRSAV 192 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~i 192 (366)
+|+|+.-|.|+|.|+.+++....+.+|.. .|..+.+.|+...|+++++.|..|++|+++ +..++..+-. .+|.+.|
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~ghG~-sINeik~~p~~~qlvls~SkD~svRlwnI~--~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGG-SINEIKFHPDRPQLVLSASKDHSVRLWNIQ--TDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred EEeecceeEEEEEecchhhhccceeccCc-cchhhhcCCCCCcEEEEecCCceEEEEecc--CCeEEEEecccccccCcE
Confidence 89999999999999999999999999988 999999999999999999999999999999 8888888764 4789999
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCC--C---------------C-------e---eEeecccCcEEEEEEcCCC
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--D---------------P-------V---LVFDGHRKTVTYIRFLDVD 245 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~---------------~-------~---~~~~~~~~~v~~~~~~~~~ 245 (366)
.++.|+++| ..+++++.|.++.+|++.... . + . .+-..|...|.|+.|- |+
T Consensus 185 LSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd 262 (385)
T KOG1034|consen 185 LSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GD 262 (385)
T ss_pred EEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-hh
Confidence 999999999 699999999999999997320 0 0 0 0123466677777774 57
Q ss_pred EEEEEeCCCcEEEEecC-CC-------------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 246 TLVTAGTDGCLKLWNVN-DS-------------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
++++-+-++.|..|... -. ..+.++.-....++.+.|+++|-++.||.|...|.|.+||+++.++.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 89999999999999872 11 23344555666788999999999999999999999999999988774
Q ss_pred EEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 312 WVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
..-.+.+ ......|...+|+. ||..|+..++|++|.-||..
T Consensus 343 ~~ttl~~----s~~~~tVRQ~sfS~---dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTH----SKSGSTVRQTSFSR---DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEe----ccccceeeeeeecc---cCcEEEEEeCCCcEEEEEee
Confidence 2222111 22356799999999 99999999999999999864
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=190.89 Aligned_cols=295 Identities=21% Similarity=0.290 Sum_probs=217.2
Q ss_pred CCCceEEEEECCCC--CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSD--SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+.++|++++|+|.. +++|+|+.-|+|-+||+.+.+... .....+..|..+|.+|.|+|. +-..+++.+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssS 254 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------DGVYLFTPHSGPVSGLKFSPA-NTSQIYSSS 254 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------CceEEeccCCccccceEecCC-Chhheeeec
Confidence 79999999999975 589999999999999996432211 122234456789999999998 457788899
Q ss_pred CCCcEEEEeCCCCce--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 119 YDGVVMEYDLEKKVP--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
.||+|++-|++.... +........ ...++.|+.+.+.+ +.+..=|.+.+||++++ +.....+. -|...|++++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~v-l~~~~~G~f~~iD~R~~-~s~~~~~~--lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSV-LFGDNVGNFNVIDLRTD-GSEYENLR--LHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccE-EEeecccceEEEEeecC-Cccchhhh--hhhcccceee
Confidence 999999999988743 333322222 67788888888877 66666669999999943 23344444 4555999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCC---CeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecC----CCceee
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVN----DSRVIR 268 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~----~~~~~~ 268 (366)
++|..+.++++++.|++.+|||+|.... +......|...|.+..|+ .+..|++.+.|..|+|||.. .-.+..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 9999999999999999999999987522 234455799999999999 66669999999999999984 334444
Q ss_pred eeec---ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeE-EEeeccCCCceEE
Q 017773 269 TYKG---HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSS-VCWRRVGEDECTL 344 (366)
Q Consensus 269 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l 344 (366)
++.. +....+.+...|.|+..++++|-.-..|-|+|-..++.+..+-.+ ....|.+ ..|+| -+..+
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~~vn~~HP---~~~~~ 479 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIPSVNEFHP---MRDTL 479 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------cccccccceeecc---cccce
Confidence 4441 123344555567799999999999999999998888866664222 1223433 47888 54445
Q ss_pred EEe-CCCCcEEEEEecc
Q 017773 345 VAG-GSDGLLHVFVGKK 360 (366)
Q Consensus 345 ~s~-~~dg~i~iw~~~~ 360 (366)
++| +..|.|+||.-++
T Consensus 480 ~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 480 AAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eccCCccceEEEEecCC
Confidence 554 5578899997654
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.9e-26 Score=176.49 Aligned_cols=255 Identities=18% Similarity=0.247 Sum_probs=197.5
Q ss_pred cccceeeeeecCCCceeeecCCCCc--------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccce
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNA--------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPV 80 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~--------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 80 (366)
.+.++.+.|++.+..++.++-++.+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee--
Confidence 4556666677666666666665543 39999999999985 478999999999999999876533
Q ss_pred eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEE
Q 017773 81 VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
+..|..+|.||.+.+. ...+++|+.|++|++||.........+.... .|.++... +..| ++
T Consensus 90 ------------igth~~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k--kVy~~~v~--g~~L-vV 150 (323)
T KOG1036|consen 90 ------------IGTHDEGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNKVVVGTFDQGK--KVYCMDVS--GNRL-VV 150 (323)
T ss_pred ------------eccCCCceEEEEeecc--CCeEEEcccCccEEEEeccccccccccccCc--eEEEEecc--CCEE-EE
Confidence 3345678999999987 8899999999999999998765555555444 79998876 5556 88
Q ss_pred ecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC---CCCeeEeeccc----
Q 017773 161 GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM---VDPVLVFDGHR---- 233 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~---- 233 (366)
|+.+..+.+||++ ............-+..+.|+++-|++ .=+++++-||.|.+=.++.. ......++.|.
T Consensus 151 g~~~r~v~iyDLR--n~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~ 227 (323)
T KOG1036|consen 151 GTSDRKVLIYDLR--NLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK 227 (323)
T ss_pred eecCceEEEEEcc--cccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence 8999999999999 43333333333455689999999976 66788889999988666543 12344556664
Q ss_pred -----CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 234 -----KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 234 -----~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
.+|++|+|+ -.+.|+||+.||.|.+||+.+.+.+.++......|..++|+ .+|..||+++.
T Consensus 228 ~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs--~dG~~LAia~s 294 (323)
T KOG1036|consen 228 DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS--MDGSLLAIASS 294 (323)
T ss_pred CceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec--cCCCeEEEEec
Confidence 479999999 66789999999999999999999999987776666666666 99999999864
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=210.52 Aligned_cols=256 Identities=23% Similarity=0.396 Sum_probs=219.0
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+.+++.+..+-.+++|+.+. +.+|...+.++..-.. ++.+++|+.|..+-+|.+.....
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-------------------~~~hsaav~~lk~~~s--~r~~~~Gg~~~k~~L~~i~kp~~ 62 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-------------------FVAHSAAVGCLKIRKS--SRSLVTGGEDEKVNLWAIGKPNA 62 (825)
T ss_pred ccccceeeeeeccccccchh-------------------hhhhhhhhceeeeecc--ceeeccCCCceeeccccccCCch
Confidence 34445555566677887653 2234556788877555 89999999999999999988888
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK 213 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 213 (366)
+..+.+|.. +|.++.|++....+ ++|+.+|+|++||+. ..+.++.+. +|...+.++.|+|-+ .+.+.|+.|+.
T Consensus 63 i~S~~~hes-pIeSl~f~~~E~Ll-aagsasgtiK~wDle--eAk~vrtLt--gh~~~~~sv~f~P~~-~~~a~gStdtd 135 (825)
T KOG0267|consen 63 ITSLTGHES-PIESLTFDTSERLL-AAGSASGTIKVWDLE--EAKIVRTLT--GHLLNITSVDFHPYG-EFFASGSTDTD 135 (825)
T ss_pred hheeeccCC-cceeeecCcchhhh-cccccCCceeeeehh--hhhhhhhhh--ccccCcceeeeccce-EEecccccccc
Confidence 888999998 99999999977665 999999999999999 788888776 788899999999998 78899999999
Q ss_pred EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE
Q 017773 214 AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
+.+||++.. .+...+.+|...+..+.|+ +|.+++.++.|..++|||...|+.+..|..|.+.+..+.+. |..-+++
T Consensus 136 ~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h--p~e~Lla 212 (825)
T KOG0267|consen 136 LKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH--PLEVLLA 212 (825)
T ss_pred ceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC--chhhhhc
Confidence 999999976 5889999999999999999 89999999999999999999999999999999988887755 9999999
Q ss_pred EecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 293 CGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
+|+.|+++++||+++.+.+...+ .....|.+.+|+| +++.+++|..+.
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~~--------~~~~~v~~~~fn~---~~~~~~~G~q~s 260 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSGK--------PETDGVRSLAFNP---DGKIVLSGEQIS 260 (825)
T ss_pred cCCCCceeeeeccceeEEeeccC--------CccCCceeeeecC---CceeeecCchhh
Confidence 99999999999999877775542 2367899999999 888888886654
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=5e-25 Score=185.97 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=197.7
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceecee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
...+..+..|+++++....... +...+.+++|+|+++.+ ++++.++.|++||..+++... .+..+
T Consensus 7 ~~~d~~v~~~d~~t~~~~~~~~-----~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~------ 72 (300)
T TIGR03866 7 NEKDNTISVIDTATLEVTRTFP-----VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG---TLPSG------ 72 (300)
T ss_pred ecCCCEEEEEECCCCceEEEEE-----CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE---eccCC------
Confidence 3557788999998877655443 23346789999999876 567788999999988754322 11111
Q ss_pred eeecCCceeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-cEEEe
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGS-GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-TMQMW 170 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-~v~~~ 170 (366)
..+..++|+|+ ++.+++ +..++.+++||+.+.+.+..+.... .+.+++|+|++..+ +++..++ .+.+|
T Consensus 73 -----~~~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l-~~~~~~~~~~~~~ 142 (300)
T TIGR03866 73 -----PDPELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIV-VNTSETTNMAHFI 142 (300)
T ss_pred -----CCccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEE-EEEecCCCeEEEE
Confidence 12567899998 876655 4568999999999887777665433 56889999999987 5555554 57788
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----C--cEEEEEEc-
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----K--TVTYIRFL- 242 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~--~v~~~~~~- 242 (366)
|.. +.+........ ..+..++|+|++..+++++..++.|++||+++. +.+..+..+. . ....++|+
T Consensus 143 d~~--~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 143 DTK--TYEIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred eCC--CCeEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECC
Confidence 987 56555544322 256789999998444455557999999999987 4444443221 1 23467788
Q ss_pred CCCEEEE-EeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe-cCCCeEEEEEeecCceEEEEeccccc
Q 017773 243 DVDTLVT-AGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG-SETNQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 243 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
++++++. .+.++.+.+||+++++.+..+. +...+..++|+ |+|++|+++ +.+|.|.+||+++++.+..+..
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~--~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---- 289 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT--PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---- 289 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC--CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc----
Confidence 7777544 4557789999999888776554 23345556555 999999876 5689999999999998887753
Q ss_pred ccCCCCceeeEEEeec
Q 017773 321 AAGSERGFVSSVCWRR 336 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~ 336 (366)
....++++++|
T Consensus 290 -----~~~~~~~~~~~ 300 (300)
T TIGR03866 290 -----GRLPWGVVVRP 300 (300)
T ss_pred -----ccccceeEeCC
Confidence 24457777765
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.4e-26 Score=175.66 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=197.5
Q ss_pred CCcc-cccccceeeeeecCCC-ceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecC
Q 017773 9 QPQA-ETTNERARCEWDFNLR-TTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDH 86 (366)
Q Consensus 9 ~~~~-~~~~~~~~~~w~~~~~-~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 86 (366)
.+++ +..=+..+..|+.... .++.. ....|.++|.+++|+.||..+++|+.|+.+++||+.+++...
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~k---a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-------- 108 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVPK---AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-------- 108 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccch---hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee--------
Confidence 3344 3344666666766542 22221 122399999999999999999999999999999999875432
Q ss_pred ceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc
Q 017773 87 SKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
+..|.++|.++.|-+...-..|++|+.|.+|+.||.....++.++.... ++.++.... + +++.+..++.
T Consensus 109 ------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv~~--p-m~vVata~r~ 177 (347)
T KOG0647|consen 109 ------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADVLY--P-MAVVATAERH 177 (347)
T ss_pred ------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhccC--c-eeEEEecCCc
Confidence 4456789999999987334589999999999999999999998888776 687776642 3 4488888999
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-CCCeeEeeccc---------CcE
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDGHR---------KTV 236 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~---------~~v 236 (366)
|.+|+++.+..+...... ..+-.++|++..++. ...+.|+-+|.+.+..+..+ .+.-..++.|. ..|
T Consensus 178 i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIES--PLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEEEEcCCCcchhhhhcC--cccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999999833222222212 233478999999887 56699999999999988774 23344566665 257
Q ss_pred EEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 237 TYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 237 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
++++|+ .-..|+|++.||+..+||-.....+++.+.|..+|++.+|. .+|.+++-+
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn--~~G~ifaYA 311 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN--RNGSIFAYA 311 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec--CCCCEEEEE
Confidence 889999 77789999999999999998888899999999999888877 888887754
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-28 Score=206.73 Aligned_cols=245 Identities=19% Similarity=0.270 Sum_probs=194.3
Q ss_pred eEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 45 IGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 45 i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
+..|.|+. +.++|||++..|.|.+||+...........+. .|...++++.|++. ...+|++|+.||+|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~----------EH~Rs~~~ldfh~t-ep~iliSGSQDg~v 158 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN----------EHERSANKLDFHST-EPNILISGSQDGTV 158 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh----------hhccceeeeeeccC-CccEEEecCCCceE
Confidence 44566764 35799999999999999998732222222333 44568999999987 47899999999999
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
++||+...+...++.+... .|.+++|+|.....|+++.+.|.+++||++. ..++...+ ..|.++|.|+.|+|++ .
T Consensus 159 K~~DlR~~~S~~t~~~nSE-SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq-p~r~~~k~--~AH~GpV~c~nwhPnr-~ 233 (839)
T KOG0269|consen 159 KCWDLRSKKSKSTFRSNSE-SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ-PDRCEKKL--TAHNGPVLCLNWHPNR-E 233 (839)
T ss_pred EEEeeecccccccccccch-hhhceeeccCCCceEEEecCCceEEEeeccC-chhHHHHh--hcccCceEEEeecCCC-c
Confidence 9999999988888888766 9999999998888889999999999999993 33444444 4899999999999976 8
Q ss_pred EEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEc--CCCEEEEEe--CCCcEEEEecCCC-ceeeeeeccccee
Q 017773 204 LVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFL--DVDTLVTAG--TDGCLKLWNVNDS-RVIRTYKGHVNNR 277 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~ 277 (366)
+||+|+.|+.|+|||..+.. ++..++. ...+|.++.|- ....|++++ .|-.|+|||++.. -+..++..|...+
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV 312 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence 99999999999999998652 2333333 45789999997 456677776 4778999999876 6777888999998
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+.++|. +.|...+.+++.||.|..-.+++
T Consensus 313 t~i~W~-~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 313 TGIAWD-SGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceecc-CCCceeeEeecCccHHHHhhhhc
Confidence 888885 23567888999999877655544
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=183.54 Aligned_cols=258 Identities=20% Similarity=0.291 Sum_probs=196.4
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC----------------CceeEeeecCCCCceeeEEeccCCCc
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK----------------KVPIFERDEHGGRRVWSVDYSKGDPV 156 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~~v~~i~~~~~~~~ 156 (366)
...|.+.++.+.-.+-.+..+.++-+..|.|.||++.. .+++.++.+|.. .=+.++|+|-..-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeeccccccc
Confidence 34666778888777763356677778899999999842 256778888886 7889999995433
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-CCCeeEeecccCc
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDGHRKT 235 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~ 235 (366)
.+++|..-+.|++|...+ ..-.+-.....+|...|..++|+|....+|++|+.||+|+|||+|.+ .+.....+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 338888889999999983 22233344445799999999999998899999999999999999987 3344555889999
Q ss_pred EEEEEEc-CCCEEEEEeCCCcEEEEecCC---CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce-
Q 017773 236 VTYIRFL-DVDTLVTAGTDGCLKLWNVND---SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP- 310 (366)
Q Consensus 236 v~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 310 (366)
|+.|.|+ .-.+|++|+.||+++|||+++ ++++.+|+-|..+|+++.|.++ +...|++++.|.+|.+||+.-..-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~-e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH-EDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc-cCceEEeccCCCcEEEEEeeccCCh
Confidence 9999999 666899999999999999986 4788999999999999999852 456778888999999999963221
Q ss_pred -------EEE-EecccccccCCC--CceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 311 -------VWV-HDFEPVTAAGSE--RGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 311 -------~~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
... .++++ ..+.-| +..+..+.|++.-|+ +|++.+.|| +.||.
T Consensus 384 ee~~~~a~~~L~dlPp-QLLFVHqGQke~KevhWH~QiPG--~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPP-QLLFVHQGQKEVKEVHWHRQIPG--LLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhccccccchhcCCc-eeEEEecchhHhhhheeccCCCC--eEEEecccc-eeEEE
Confidence 000 01111 112223 456899999997663 889999999 55664
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=195.61 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=224.4
Q ss_pred EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC---------CCcEEEE
Q 017773 46 GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT---------SGRVLGS 116 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~l~~ 116 (366)
.++.|+|....|.+...|..++|||+.+.........+..| ...|..+.--|.. ....+.+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH----------S~ciW~Ve~~p~nv~~~~~aclp~~cF~T 397 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH----------SACIWDVENLPCNVHSPTAACLPRGCFTT 397 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec----------cceeeeeccccccccCcccccCCccceeE
Confidence 46789998889999999999999999987665544444444 3456665554410 1345899
Q ss_pred EcCCCcEEEEeCCCCce--e-E---------ee------------------------ecCCCCceeeEEeccCCCceEEE
Q 017773 117 GDYDGVVMEYDLEKKVP--I-F---------ER------------------------DEHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~--~-~---------~~------------------------~~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
++.|++|++|+++.+.. + + .+ .....-.+.+++.+|++++| ++
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL-As 476 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL-AS 476 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee-cc
Confidence 99999999999976210 1 0 00 00011268999999999999 99
Q ss_pred ecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE
Q 017773 161 GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
|..-|.+++|++. ..+....+. .|...|.|+.|+.- +.++||+++.|..|.+||......+++++.+|...|++
T Consensus 477 GDr~GnlrVy~Lq--~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQ--ELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred cCccCceEEEEeh--hhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 9999999999998 555555555 78889999999752 34789999999999999998877889999999999999
Q ss_pred EEEc-CC--CEEEEEeCCCcEEEEecCCCceeeeeeccc-----ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 239 IRFL-DV--DTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-----NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 239 ~~~~-~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
+.|. .+ ..+++++.|..|.+--.+.......+..|. ..++.+++. |..+++++++.|..|+||++.+++.
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd--p~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD--PTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC--CCcceEEEEecccceEEEeccccce
Confidence 9997 44 678999999987543333222222222222 234444544 9999999999999999999999999
Q ss_pred EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCCCC
Q 017773 311 VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPLSA 365 (366)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l~~ 365 (366)
.+.++-. .+|.+....+...| .|.|||+.+.|.++.++|.-.++..|
T Consensus 631 ~k~FKgs-----~~~eG~lIKv~lDP---SgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 631 VKSFKGS-----RDHEGDLIKVILDP---SGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eeeeccc-----ccCCCceEEEEECC---CccEEEEeecCCceEEEEeccchhhh
Confidence 9887533 56778888999999 88899999999999999998877655
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=173.42 Aligned_cols=258 Identities=17% Similarity=0.226 Sum_probs=192.7
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----ceeEeeecCCCCceeeEEecc-CCCceEEEecCCCcEEE
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSK-GDPVLGASGSDDGTMQM 169 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~dg~v~~ 169 (366)
+|..-|.++.|.+. |+++|+++.|++|+|||..+. .+....+.|.+ .|..+.|.+ .-..++++++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCccccceEEEEecCCceee
Confidence 45567999999998 999999999999999997544 35566778887 899999864 33344599999999999
Q ss_pred eeCCCCC-----CceeEeecCCCCCCCeEEEEEcCCC-CcEEEEEecCCeEEEEecCCCCCC-----eeEe-------ec
Q 017773 170 WDPRCDG-----GKCVSTVQPSASRSAVCCVEFHPFG-SSLVAAGCADKKAYAYDVRKMVDP-----VLVF-------DG 231 (366)
Q Consensus 170 ~d~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~-------~~ 231 (366)
|.-...+ .+-++.-........|+++.|.|.. +-.+|+++.||.++||+....... ...+ ..
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9863111 1223333333567799999999953 267899999999999998654221 1111 13
Q ss_pred ccCcEEEEEEc----CCCEEEEEeCC-----CcEEEEecCCC----ceeeeeecccceeeeEEEEEec--CCCeEEEecC
Q 017773 232 HRKTVTYIRFL----DVDTLVTAGTD-----GCLKLWNVNDS----RVIRTYKGHVNNRNFVGLSVWR--HGGLLGCGSE 296 (366)
Q Consensus 232 ~~~~v~~~~~~----~~~~l~~~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 296 (366)
+..+..|+.|+ ...+|+.|+.+ +.++||..... ..+.++.+|..+|+.++|+++- .-.+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 55678889996 34567777765 47889987554 4566788999999999999421 2357999999
Q ss_pred CCeEEEEEeec------------CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 297 TNQVFVYDVRW------------GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 297 dg~i~iwd~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
|| |+||++.. ...+..+++.....+.+|++.|+.+.|+- .|..|++.|.||.||+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm---tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM---TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee---eeeEEeecCCCceeeehhhh
Confidence 99 99999973 12223344444566789999999999999 88899999999999999753
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.1e-26 Score=192.71 Aligned_cols=289 Identities=18% Similarity=0.226 Sum_probs=215.3
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|++.|.+++..|.|.+||+|+.||+|+||.+.++.+.. ...-. +.|.|++|+|..+...||++-
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr---~~~~d-----------~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR---TVQFD-----------SEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE---EEeec-----------ceeEEEEecCCCCceeEEEEe
Confidence 3499999999999999999999999999999999998866 22222 359999999985445565554
Q ss_pred CCCcEEEEeCCCCc-------------------------------------eeEeeecCCCCceeeEEeccCCCceEEEe
Q 017773 119 YDGVVMEYDLEKKV-------------------------------------PIFERDEHGGRRVWSVDYSKGDPVLGASG 161 (366)
Q Consensus 119 ~dg~i~iw~~~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 161 (366)
.+. +.+.+..-|. -+...-.|.. +|..+.|+..|.+| ++.
T Consensus 463 ~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYl-atV 539 (733)
T KOG0650|consen 463 GEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYL-ATV 539 (733)
T ss_pred cCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceE-EEe
Confidence 333 4444432110 0112223334 89999999999998 555
Q ss_pred cC---CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE
Q 017773 162 SD---DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 162 ~~---dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
.. ...|.|+++. .......++ ...+.|.++.|+|.. .+++++ ....|++||+... ..+..+......|..
T Consensus 540 ~~~~~~~~VliHQLS--K~~sQ~PF~--kskG~vq~v~FHPs~-p~lfVa-Tq~~vRiYdL~kq-elvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLS--KRKSQSPFR--KSKGLVQRVKFHPSK-PYLFVA-TQRSVRIYDLSKQ-ELVKKLLTGSKWISS 612 (733)
T ss_pred ccCCCcceEEEEecc--cccccCchh--hcCCceeEEEecCCC-ceEEEE-eccceEEEehhHH-HHHHHHhcCCeeeee
Confidence 43 3468899988 444444443 344589999999987 566665 4578999999875 566777767788999
Q ss_pred EEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec-CceEEEEe
Q 017773 239 IRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GEPVWVHD 315 (366)
Q Consensus 239 ~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 315 (366)
++.+ .|+-|+.++.|+.+..+|+.-. ++.+++..|...++.+++. +.-.++++|+.||++.|+.-.- ...+..-.
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H--~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH--KRYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc--cccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 9999 8999999999999999999755 7888899999998888877 8889999999999999985321 11111111
Q ss_pred cccccccCCCCce----eeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 316 FEPVTAAGSERGF----VSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 316 ~~~~~~~~~~~~~----v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
+-++..+.+|... |..+.|+|..| .|+++|.||+|++|
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qp---WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQP---WLFSAGADGTIRLF 732 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCc---eEEecCCCceEEee
Confidence 2233444667655 99999999666 99999999999998
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.2e-24 Score=178.87 Aligned_cols=283 Identities=14% Similarity=0.208 Sum_probs=218.2
Q ss_pred CCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
..+.|..+.|+|.+ +++++.+ .|.+..|+...+....+...+..+.+ ..|.|++|.++ |+ +++|..
T Consensus 199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ek---------k~Vl~v~F~en--gd-viTgDS 265 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREK---------KFVLCVTFLEN--GD-VITGDS 265 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccc---------eEEEEEEEcCC--CC-EEeecC
Confidence 46778899999966 5666665 68899999988777665555655554 35999999997 54 678999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec---------------
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ--------------- 184 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~--------------- 184 (366)
+|.|.||+..+.+..+....|.+ .|.+++...+|.. ++|+.|+.|..||-. .+.++..+
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~Gtl--lSGgKDRki~~Wd~~---y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTL--LSGGKDRKIILWDDN---YRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred CceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccE--eecCccceEEecccc---ccccccccCchhcCCeeEEecCC
Confidence 99999999988888887778887 9999999988764 569999999999943 11111111
Q ss_pred ------------------------CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEE
Q 017773 185 ------------------------PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 185 ------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 240 (366)
..+|......++.+|+. ..+++++.|+.+++|+ .. ++.-.. .-..++.++.
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~-k~~wt~-~~~d~~~~~~ 414 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH-KLEWTK-IIEDPAECAD 414 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CC-ceeEEE-EecCceeEee
Confidence 11345567788999987 7899999999999999 22 333332 3467889999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccc
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
|+ .+ .++.|...|...+.|.++...+..-. ...++++++++ |+|.+||.|+.|+.|++|.+..+.......-
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ys--p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~--- 487 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYS--PDGAFLAVGSHDNHIYIYRVSANGRKYSRVG--- 487 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEc--CCCCEEEEecCCCeEEEEEECCCCcEEEEee---
Confidence 99 55 99999999999999999866554444 47777777777 9999999999999999999975443332211
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..+..+|+.+.|++ |+++|.+-+-|-.|..|....
T Consensus 488 ---k~~gs~ithLDwS~---Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 488 ---KCSGSPITHLDWSS---DSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred ---eecCceeEEeeecC---CCceEEeccCceEEEEEcccc
Confidence 22348999999999 888999999999999995443
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-27 Score=214.30 Aligned_cols=290 Identities=19% Similarity=0.352 Sum_probs=218.8
Q ss_pred EEEEECCCCC-EEEEe----------ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc--
Q 017773 46 GVIEFDPSDS-VFATG----------GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR-- 112 (366)
Q Consensus 46 ~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 112 (366)
-.++|+|++. ++|+| +.+.++.||.+..............+ ......+.++|.+. +.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--------~s~~rF~kL~W~~~--g~~~ 79 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--------QSSNRFNKLAWGSY--GSHS 79 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--------cccccceeeeeccc--CCCc
Confidence 4567888775 55555 23456677766543322100011111 11235789999987 44
Q ss_pred --EEEEEcCCCcEEEEeCCCC------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec
Q 017773 113 --VLGSGDYDGVVMEYDLEKK------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 113 --~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
+|+.|..||.|.+||...- ..+.+...|++ .|..+.|++....++++|+.||.|.|||+. ..+.-....
T Consensus 80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN~~q~nlLASGa~~geI~iWDln--n~~tP~~~~ 156 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFNPFQGNLLASGADDGEILIWDLN--KPETPFTPG 156 (1049)
T ss_pred cceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeeccccCCceeeccCCCCcEEEeccC--CcCCCCCCC
Confidence 4899999999999998752 34556777888 999999999998788999999999999998 322222222
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC--cEEEEEEc--CCCEEEEEeCCC---cEE
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFL--DVDTLVTAGTDG---CLK 257 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~l~~~~~d~---~i~ 257 (366)
.......|.+++|+..-..+|++++.+|.+.|||+|.. +++..+..+.. .+..++|+ ....+++++.|. .|.
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 22345689999999987789999999999999999998 66666655544 47789998 445666666554 599
Q ss_pred EEecCCC-ceeeeeecccceeeeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 258 LWNVNDS-RVIRTYKGHVNNRNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 258 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
+||+|.. .+++++++|...+..+.|+ + |..+|++++.|++|.+|+.++++.+..+. ....++..+.|+
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------AQGNWCFDVQWC 305 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecC--------CCCcceeeeeec
Confidence 9999875 6888899999998888887 6 44899999999999999999999988773 346889999999
Q ss_pred ccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
|..| ..+++++.||.|.||.+.+.
T Consensus 306 pr~P--~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 306 PRNP--SVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCc--chhhhheeccceeeeeeecC
Confidence 9665 48899999999999998764
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-25 Score=171.96 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=191.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+-|.++.|.+.|+.+||++.|++|+|||.++..... ........|.+.|..+.|.+..-|+.+|+++.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce---------EEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 489999999999999999999999999999986544322 12224567889999999988778999999999
Q ss_pred CCcEEEEeCCCC---------ceeEeeecCCCCceeeEEeccCC-CceEEEecCCCcEEEeeCCCCCC----ceeEeec-
Q 017773 120 DGVVMEYDLEKK---------VPIFERDEHGGRRVWSVDYSKGD-PVLGASGSDDGTMQMWDPRCDGG----KCVSTVQ- 184 (366)
Q Consensus 120 dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~dg~v~~~d~~~~~~----~~~~~~~- 184 (366)
|+++.||.-... ....++..... .|++++|.|.. ...+++++.||.++||+.-.... .....++
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999976321 12233434444 89999999963 23359999999999998762211 1111111
Q ss_pred ----CCCCCCCeEEEEEcCCC--CcEEEEEecC-----CeEEEEecCCCC---CCeeEeecccCcEEEEEEc-----CCC
Q 017773 185 ----PSASRSAVCCVEFHPFG--SSLVAAGCAD-----KKAYAYDVRKMV---DPVLVFDGHRKTVTYIRFL-----DVD 245 (366)
Q Consensus 185 ----~~~~~~~i~~~~~~~~~--~~~l~~~~~d-----~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~-----~~~ 245 (366)
+..+..+..|+.|+|.- ..+||+|+.+ +.++||...... ..+..+.+|..+|+.++|. .-.
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 22355688899999742 3678888766 578898876553 2345567899999999996 234
Q ss_pred EEEEEeCCCcEEEEecCCC--------------------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 246 TLVTAGTDGCLKLWNVNDS--------------------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
.|++++.|| |+||.++.. +.+..+..|.+.+..+.|. -.|..|++.+.||.|++|..
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN--mtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN--MTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe--eeeeEEeecCCCceeeehhh
Confidence 789999999 999998731 3455677899998888877 78999999999999999986
Q ss_pred e
Q 017773 306 R 306 (366)
Q Consensus 306 ~ 306 (366)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 4
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.5e-25 Score=190.66 Aligned_cols=304 Identities=15% Similarity=0.166 Sum_probs=233.3
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+|++-|+++.|+|.+..|++++.|.++.+|...+..-......-.+.. .+.........|+|+ ++.+++-
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~------gg~a~GF~g~lw~~n--~~~ii~~ 334 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV------GGSAGGFWGGLWSPN--SNVIIAH 334 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc------cccccceeeEEEcCC--CCEEEEe
Confidence 34799999999999999999999999999999877653322111111111 123456889999999 8999999
Q ss_pred cCCCcEEEEeCCCC---ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 118 DYDGVVMEYDLEKK---VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 118 ~~dg~i~iw~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
+..|..++|..... .+...+.+|.+ .|.+++|.|.|.+| ++.+.|.+-++|-.-....+-...-+++-|...++|
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~dv~W~psGefl-Lsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVD-GVKDVDWDPSGEFL-LSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTC 412 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccc-cceeeeecCCCCEE-EEeccccceeeecccccccceeeeccccccccccee
Confidence 99999999983322 23445678887 99999999999988 889999999998765212222222334456669999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCC-------------------------------------------CCC-------
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRK-------------------------------------------MVD------- 224 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------------------------~~~------- 224 (366)
+++-+.. ..+++|..+..+++|+... +..
T Consensus 413 ~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 413 LSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 9999853 6888988889999997621 000
Q ss_pred -------------------------CeeEeecccCcEEEEEEc-CCCEEEEEeCCC-----cEEEEecCCCceeeeeecc
Q 017773 225 -------------------------PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG-----CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 225 -------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~ 273 (366)
.++.+.+|...|++++.+ +++++++++... .|++|+..+...+..+.+|
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 011245788899999999 899999988554 5999999999999999999
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
.-.|+.++|+ |||++|++.+.|.++.+|........ .+.+ .....|+.-|+++.|+| ++.+++|++.|.+|
T Consensus 572 sLTVT~l~FS--pdg~~LLsvsRDRt~sl~~~~~~~~~-e~~f---a~~k~HtRIIWdcsW~p---de~~FaTaSRDK~V 642 (764)
T KOG1063|consen 572 SLTVTRLAFS--PDGRYLLSVSRDRTVSLYEVQEDIKD-EFRF---ACLKAHTRIIWDCSWSP---DEKYFATASRDKKV 642 (764)
T ss_pred ceEEEEEEEC--CCCcEEEEeecCceEEeeeeecccch-hhhh---ccccccceEEEEcccCc---ccceeEEecCCceE
Confidence 9888888877 99999999999999999998543221 1111 12478999999999999 88899999999999
Q ss_pred EEEEeccc
Q 017773 354 HVFVGKKK 361 (366)
Q Consensus 354 ~iw~~~~~ 361 (366)
++|.....
T Consensus 643 kVW~~~~~ 650 (764)
T KOG1063|consen 643 KVWEEPDL 650 (764)
T ss_pred EEEeccCc
Confidence 99988664
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.9e-26 Score=194.91 Aligned_cols=238 Identities=20% Similarity=0.277 Sum_probs=198.6
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE--eeecCCCCceee-EEeccCCCceEEEecCCCcEE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF--ERDEHGGRRVWS-VDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~v~~-i~~~~~~~~l~~~~~~dg~v~ 168 (366)
.+.+|...|..++..+ +..++++++||++++|+-..++.+. .+.++.+ -|.. ++|-+..+..+++|+.|.++.
T Consensus 9 ~l~gH~~DVr~v~~~~---~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g-~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD---GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKG-FIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EeccCccchheeEecC---CeEEeecCCCCceeeeeccCcccccceecccCcc-eeeccceeccccCcceEeecccceEE
Confidence 3557778899988877 5689999999999999986665443 3555655 5555 888764444449999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV 248 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 248 (366)
+|.+. ...+...+. +|+..|++++...++ .+++|+.|.++++|-... ....+.+|+..|.++..-+.+.++
T Consensus 85 v~~~~--~~~P~~~Lk--gH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 85 VFKLS--QAEPLYTLK--GHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred EEecC--CCCchhhhh--ccccceeeeecCCcC--ceEecccccceEEecchh---hhcccCCcchheeeeeecCCCcEE
Confidence 99998 788888887 888899999988876 389999999999997654 556689999999999887555999
Q ss_pred EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 249 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
||+.|.+|++|.- ++.+++|.+|...|+.+++- + +..+++++.||.|+.|++ +|+.+..+ .+|+..
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl--~-~~~flScsNDg~Ir~w~~-~ge~l~~~--------~ghtn~ 221 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL--D-DSHFLSCSNDGSIRLWDL-DGEVLLEM--------HGHTNF 221 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEe--c-CCCeEeecCCceEEEEec-cCceeeee--------eccceE
Confidence 9999999999974 78899999999999999887 4 456788899999999999 67777665 679999
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
|.+++..+ ++..++++|+|++++||+..
T Consensus 222 vYsis~~~---~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMAL---SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecC---CCCeEEEecCCceEEEeecC
Confidence 99999777 66799999999999999876
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-27 Score=211.13 Aligned_cols=257 Identities=19% Similarity=0.322 Sum_probs=209.7
Q ss_pred CCCceEEEEECCCCCE----EEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 41 VSDSIGVIEFDPSDSV----FATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
.....+.++|.+.|.. ||.|..||.|.+||........ ..........|.+.|..+.|++. .+++||+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~-------~~~~la~~~~h~G~V~gLDfN~~-q~nlLAS 134 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA-------SEEVLATKSKHTGPVLGLDFNPF-QGNLLAS 134 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc-------chHHHhhhcccCCceeeeecccc-CCceeec
Confidence 4667899999997764 9999999999999987631111 11112233457789999999998 3569999
Q ss_pred EcCCCcEEEEeCCCCceeEee-ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFER-DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
|+.||.|.|||++..+.-... .......|.+++|+..-.++|++++.+|.+.|||++ ..+++..+........+..+
T Consensus 135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr--~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR--KKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc--CCCcccccccCCCccceeee
Confidence 999999999999876544444 221223899999999988898999999999999999 66777777655555568899
Q ss_pred EEcCCCCcEEEEEecCC---eEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 196 EFHPFGSSLVAAGCADK---KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
+|+|++...+++++.|. .|.+||+|....+++.+++|+..|.++.|+ |..++++++.|+.|.+|+..+++.+.++
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 99999888888877664 599999999888999999999999999998 6689999999999999999999999999
Q ss_pred ecccceeeeEEEEEecC-CCeEEEecCCCeEEEEEeecCc
Q 017773 271 KGHVNNRNFVGLSVWRH-GGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
......+.-+.|+ |. ...+++++.||.|.||.+....
T Consensus 293 p~~~nW~fdv~w~--pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWC--PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcceeeeeec--CCCcchhhhheeccceeeeeeecCC
Confidence 9877777777777 64 4588899999999999997654
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.7e-28 Score=205.33 Aligned_cols=234 Identities=22% Similarity=0.350 Sum_probs=209.0
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|...+.++..-..++.+++|+.|..+-+|.+....... .+.+|..+|.++.|++. ..+|++|+.
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------------S~~~hespIeSl~f~~~--E~Llaagsa 90 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------------SLTGHESPIESLTFDTS--ERLLAAGSA 90 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------------eeeccCCcceeeecCcc--hhhhccccc
Confidence 488889999987778999999999999999987644332 36677889999999998 899999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+|+|++||++..+.++++.+|.. .+.++.|+|-+.+. +.|+.|+.+++||++ ...+...+. +|...+..++|+|
T Consensus 91 sgtiK~wDleeAk~vrtLtgh~~-~~~sv~f~P~~~~~-a~gStdtd~~iwD~R--k~Gc~~~~~--s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVRTLTGHLL-NITSVDFHPYGEFF-ASGSTDTDLKIWDIR--KKGCSHTYK--SHTRVVDVLRLSP 164 (825)
T ss_pred CCceeeeehhhhhhhhhhhcccc-CcceeeeccceEEe-ccccccccceehhhh--ccCceeeec--CCcceeEEEeecC
Confidence 99999999999999999999998 99999999999988 999999999999999 778888887 5888999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
+| .+++.|+.|..++|||...+ +....|..|.+.+..+.|+ ..-++++|+.|+++++||+++.+.+.........+.
T Consensus 165 ~G-r~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 165 DG-RWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVR 242 (825)
T ss_pred CC-ceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCce
Confidence 99 89999999999999999988 7889999999999999999 556778999999999999999999888887777777
Q ss_pred eEEEEEecCCCeEEEecCCC
Q 017773 279 FVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg 298 (366)
+.+|. |++..+++|....
T Consensus 243 ~~~fn--~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 243 SLAFN--PDGKIVLSGEQIS 260 (825)
T ss_pred eeeec--CCceeeecCchhh
Confidence 77777 9999999987653
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.6e-26 Score=188.55 Aligned_cols=265 Identities=20% Similarity=0.250 Sum_probs=213.6
Q ss_pred ccccceeeeeecCCC--ceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceece
Q 017773 14 TTNERARCEWDFNLR--TTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
+.+...+-+|+.... +...... ..+.....|+++.+.|||+.|++|+.-.++.|||+....... ..
T Consensus 436 TgGkgcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri-----ka------ 503 (705)
T KOG0639|consen 436 TGGKGCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI-----KA------ 503 (705)
T ss_pred ecCCCeEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch-----hh------
Confidence 456667778887643 1111111 122256779999999999999999999999999998754322 00
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
.+......+++++.+|| .+..+++..||.|.|||+.....++.+++|.+ .+.||..+++|..| -+|+-|++|+.||
T Consensus 504 eltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtkl-WTGGlDntvRcWD 579 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKL-WTGGLDNTVRCWD 579 (705)
T ss_pred hcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCcee-ecCCCccceeehh
Confidence 01111235788999999 99999999999999999999999999999999 89999999999998 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
++ .++.+.... ....|.++.++|++ .++++|..++.+.+...... ....+..|...|.++.|. -|+++++.
T Consensus 580 lr--egrqlqqhd---F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 580 LR--EGRQLQQHD---FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred hh--hhhhhhhhh---hhhhheecccCCCc-cceeeecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeec
Confidence 99 666555544 33489999999998 89999999999999887764 456677799999999999 99999999
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
+.|+.+..|...-|..+.+.+. ...|.++.++ .|.+++++|+.|....+|.+
T Consensus 652 GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS--~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDIS--FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeeccc-cCcceeeeec--cCceEEEecCCCcceEEEEE
Confidence 9999999999988888777764 3455555555 89999999999998888875
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-25 Score=184.25 Aligned_cols=294 Identities=18% Similarity=0.192 Sum_probs=218.3
Q ss_pred cccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEe--ecCCeEEEEEceecccccceeeeecCce
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATG--GIARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
+......-.+..||.............. .+..+.++.|+.... |+++ +.|..+++|.-.......+.....+.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t--~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-- 79 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT--AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-- 79 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC--CCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc--
Confidence 3444445556667765544432222111 123389999998764 4444 45778999975543211111111111
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
..-.|++.... ..++++|+..+.|+|||+....+.+.++.|.. .|+++.++..+.++ ++++..|.|.
T Consensus 80 ---------d~~~Cv~~~s~--S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s-tvt~v~YN~~Deyi-Asvs~gGdii 146 (673)
T KOG4378|consen 80 ---------DNAFCVACASQ--SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS-TVTYVDYNNTDEYI-ASVSDGGDII 146 (673)
T ss_pred ---------chHHHHhhhhc--ceeeeccCcCceeeehhhHHHHHhhhccCCcc-eeEEEEecCCccee-EEeccCCcEE
Confidence 12344444444 67999999999999999998777888888987 99999999988888 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDT 246 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 246 (366)
+..+. ++.....+... ....+.-+.|+|..+.+|.+++.+|.|.+||+............|..+...++|+ +..+
T Consensus 147 ih~~~--t~~~tt~f~~~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 147 IHGTK--TKQKTTTFTID-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEecc--cCccccceecC-CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 99998 55555555432 3447789999999878889999999999999998855555567899999999998 7778
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC-ceEEEEecccccccCCC
Q 017773 247 LVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG-EPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 325 (366)
|++.+.|..|.+||.+..+....+.. ..+...++|. ++|.+|++|...|.|..||++.. .++..+ ..|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~--~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------sah 292 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFS--ECGTYLCAGNSKGELIAYDMRSTKAPVAVR--------SAH 292 (673)
T ss_pred EEEecccceEEEeecccccccceeee-cCCcceeeec--CCceEEEeecCCceEEEEecccCCCCceEe--------eec
Confidence 99999999999999998877777764 2355566666 99999999999999999999854 344443 668
Q ss_pred CceeeEEEeec
Q 017773 326 RGFVSSVCWRR 336 (366)
Q Consensus 326 ~~~v~~~~~~~ 336 (366)
...|++++|-|
T Consensus 293 ~~sVt~vafq~ 303 (673)
T KOG4378|consen 293 DASVTRVAFQP 303 (673)
T ss_pred ccceeEEEeee
Confidence 89999999987
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=180.19 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=212.7
Q ss_pred eEEEEECCCCCEEEEeecCC---eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC-----CCCcEEEE
Q 017773 45 IGVIEFDPSDSVFATGGIAR---KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG-----TSGRVLGS 116 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~ 116 (366)
.-.+..-|+.++++++-.+. .+.+|=.+..... .+..|.-.. +..-.|++|... ..|+++|.
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~il------pafPLC~ewld~~~~~~~~gNyvAi 197 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFIL------PAFPLCIEWLDHGSKSGGAGNYVAI 197 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceec------cCcchhhhhhhcCCCCCCCcceEEE
Confidence 34556678777777775432 3444433332210 111121110 123456676432 24789999
Q ss_pred EcCCCcEEEEeCCCCc---eeEe------------------eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 117 GDYDGVVMEYDLEKKV---PIFE------------------RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~---~~~~------------------~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
|+.|..|.|||+.-.. +... ..+|+. .|.+++|+..-+.+|++|+.|.+|++||+.
T Consensus 198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-- 274 (463)
T KOG0270|consen 198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNFRNVLASGSADKTVKLWDVD-- 274 (463)
T ss_pred eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhccccceeEEecCCCceEEEEEcC--
Confidence 9999999999986321 1111 124555 788999999989999999999999999999
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCC
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTD 253 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d 253 (366)
++++...+. .|...|.++.|+|..+.++++|+.|++|.+.|.|.....-..++ -.+.|-.++|. ....++++..|
T Consensus 275 ~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 275 TGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred CCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCC
Confidence 899999988 56779999999999989999999999999999996433323332 45789999997 66788999999
Q ss_pred CcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEE
Q 017773 254 GCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSV 332 (366)
Q Consensus 254 ~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 332 (366)
|+|+-+|+|+. +++.+++.|..+|..+++.. ....++++++.|+.|++|++....+....... -.-+...|.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~------~~~~rl~c~ 424 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS------FKLGRLHCF 424 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCCCCccccccc------ccccceeec
Confidence 99999999986 99999999999999998873 34568899999999999999755443221100 012346677
Q ss_pred EeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 333 CWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
++.|.-+ -.|+.||..+.++|||+.+.
T Consensus 425 ~~~~~~a--~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 425 ALDPDVA--FTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccCCCcc--eEEEecCccceEEEeecccC
Confidence 7777433 57889999999999998764
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-25 Score=192.08 Aligned_cols=245 Identities=18% Similarity=0.235 Sum_probs=197.9
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
+|....+.++|.|+ |..|++++.||.|++|+.... +.-..+..+.. .|.+++... .++ ++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~-~v~~ia~~s--~~f-~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEEEPETIDISGE-LVSSIACYS--NHF-LTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcCC--CCEEEEecCCCceEEeecCCcccCCchhhccCc-eeEEEeecc--cce-EEeeccceEEEeeCC
Confidence 56778999999999 999999999999999988765 32233332443 788887654 455 999999999999998
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT 252 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 252 (366)
+++.-..+. ...-++++++++-+| .++|.|+.|-.|++.++... .....+++|.++|.++.++ .+++|++.+-
T Consensus 85 --s~~~~~iL~--Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 85 --SGEEDTILA--RFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred --CCCccceee--eeeccceEEEEecCC-cEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEEEec
Confidence 444332222 122389999999998 89999999999999999887 5788899999999999999 9999999999
Q ss_pred CCcEEEEecCCCceeeeeeccc------ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCC
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHV------NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSER 326 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
||.|++||+.++.+..++.+-. ..-.+...+|+|++..++....|+.|.+|+..+.+..+.+... .+.
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------~~s 232 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------LSS 232 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------ccc
Confidence 9999999999998777765411 0112445556699888888889999999999999988877533 244
Q ss_pred ceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 327 GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 327 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..+..+.|+| .|+|||+++.||.|.|||.++
T Consensus 233 s~~~~~~wsP---nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 233 SKFSDLQWSP---NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cceEEEEEcC---CCcEEeeeccCCcEEEEeccc
Confidence 5599999999 889999999999999999984
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=174.42 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=171.5
Q ss_pred CccCCCceEEEEECCCCC--EEEEeecCCeEEEEEceecccccceeeee---cCceeceeeeecCCceeEEEEecCCCCc
Q 017773 38 NAAVSDSIGVIEFDPSDS--VFATGGIARKIRIYNIKSVLVDHPVVAVV---DHSKVCDYYICTPAKLSSLKWKPGTSGR 112 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (366)
.+.|.+.++.+.-++-++ +.|+=+..|.|+||++...........+. ....+.-.+.+|...=+.++|+|.. -.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~-~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK-TG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc-cc
Confidence 345889999998888664 55666778999999987532211000111 1122233455777889999999963 34
Q ss_pred EEEEEcCCCcEEEEeCCCCcee---EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPI---FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
.|++|..-+.|++|...++.-. ..+.+|.. .|..++|+|....+|++|+.||+|+|||++ .+.....+....|.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-SVEDLqWSptE~~vfaScS~DgsIrIWDiR--s~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-SVEDLQWSPTEDGVFASCSCDGSIRIWDIR--SGPKKAAVSTKAHN 302 (440)
T ss_pred ccccCccccceEeeeeccCceeecCcccccccc-chhhhccCCccCceEEeeecCceEEEEEec--CCCccceeEeeccC
Confidence 5788888899999999887432 23556776 999999999999999999999999999999 45333333335788
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC--CCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCC
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM--VDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 263 (366)
..|+.+.|+..- .+||+|+.||+++|||+|.. .+++..++-|+.+|+++.|+ +...|++++.|.+|.+||+..
T Consensus 303 sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 899999999987 59999999999999999964 36788999999999999998 678899999999999999963
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=183.52 Aligned_cols=284 Identities=18% Similarity=0.260 Sum_probs=198.3
Q ss_pred CCcccccccceeeeeecCCCcee--eecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecC
Q 017773 9 QPQAETTNERARCEWDFNLRTTV--SSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDH 86 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 86 (366)
+.+....++..+..++....... .......+.|...|..+.|-|....|++++.|.+++.||++.......
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------- 137 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------- 137 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-------
Confidence 55556666677777665544332 111134566999999999999777999999999999999988655431
Q ss_pred ceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce---------------------------eEeeec
Q 017773 87 SKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP---------------------------IFERDE 139 (366)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------~~~~~~ 139 (366)
..+.+|...|.+++|.|. +...|++|+.||.|.|||+.-... +.....
T Consensus 138 ----~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 138 ----RLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ----eeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 135677789999999998 468899999999999999853210 001111
Q ss_pred CCCCceee---EEeccCCCceEEEecC-CCcEEEeeCCCCC----CceeEeecCCCC---CCCeEEEEEcCCCCcEEEEE
Q 017773 140 HGGRRVWS---VDYSKGDPVLGASGSD-DGTMQMWDPRCDG----GKCVSTVQPSAS---RSAVCCVEFHPFGSSLVAAG 208 (366)
Q Consensus 140 ~~~~~v~~---i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~----~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~ 208 (366)
+.. .|.+ +.+..|...| ++++. |+.|++||++.+. +++........+ .-.+.++.....| .++++.
T Consensus 213 ~s~-ti~ssvTvv~fkDe~tl-aSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~As 289 (720)
T KOG0321|consen 213 ASN-TIFSSVTVVLFKDESTL-ASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFAS 289 (720)
T ss_pred ccC-ceeeeeEEEEEecccee-eeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEE
Confidence 222 3333 4444566666 77666 9999999999321 112222222222 3367888888888 555555
Q ss_pred ecCCeEEEEecCCCC-CCeeEeecccCcEEEE--EEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEE
Q 017773 209 CADKKAYAYDVRKMV-DPVLVFDGHRKTVTYI--RFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 209 ~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~--~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 283 (366)
+.|+.|++|+++... .++..+.++...-..+ ..+ ++.++++|+.|....+|.+.+. .....+.+|...|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 579999999998752 2344444433221111 224 8899999999999999999886 4566778999999999999
Q ss_pred EecCCCeEEEecCCCeEEEEEeecC
Q 017773 284 VWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 284 ~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
+++....+.+ ++|..+++|++.++
T Consensus 370 pS~~t~v~Tc-SdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 370 PSATTPVATC-SDDFRVKIWRLSNG 393 (720)
T ss_pred cccCCCceee-ccCcceEEEeccCc
Confidence 8777776655 99999999999654
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9e-24 Score=179.46 Aligned_cols=243 Identities=15% Similarity=0.248 Sum_probs=196.4
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
-.+++|.+++|+.. .+.||.+-.+|.|.+|++..+ -....+.++.++.|.+++|.+ +..| ++.+.+|.|.-||+.
T Consensus 23 ~~Ps~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RL-FS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRL-FSSGLSGSITEWDLH 98 (691)
T ss_pred eeccceEEEEEecc--CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeE-EeecCCceEEEEecc
Confidence 34678999999998 888999999999999999876 345567778888999999996 4556 788899999999999
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe--eEeecccCcEEEEEEc-CCCEEEEE
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV--LVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
+.++...+...+ +.|.+++.+|.+ ..++.|+.||.++.++.... +.. ..+.-.++.+.++.|+ ++..+++|
T Consensus 99 --~lk~~~~~d~~g--g~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 99 --TLKQKYNIDSNG--GAIWSIAINPEN-TILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred --cCceeEEecCCC--cceeEEEeCCcc-ceEEeecCCceEEEEecCCc-eEEEEeecccccceEEEEEecCCccEEEec
Confidence 888888888544 499999999998 89999999997777777654 221 2233456899999999 88889999
Q ss_pred eCCCcEEEEecCCCceeeeeec-----cc---ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccccc
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKG-----HV---NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
+.||.|++||..++..+..... .. .-++.+.+- ....|++|...|+|.+||...+..+..+
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gTLiqS~-------- 241 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGTLIQSH-------- 241 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcchhhhh--------
Confidence 9999999999999977762221 11 123333332 4567899999999999999999888665
Q ss_pred CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 323 GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 323 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
..|.+.|.+++..+ ++.+++++|.|+.|.-|...+.
T Consensus 242 ~~h~adVl~Lav~~---~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 242 SCHDADVLALAVAD---NEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred hhhhcceeEEEEcC---CCCeEEEccCCCceEEEEecCC
Confidence 45889999999998 7779999999999998887664
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9.7e-24 Score=179.68 Aligned_cols=316 Identities=12% Similarity=0.161 Sum_probs=218.7
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCC---EEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDS---VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
+......+..|+|....+.+ ..+ +|..+|+|+.|-|+.+ ++++|+.||.|.+|.++.... .....+.+|.
T Consensus 29 afGa~~~Iav~dp~k~~i~t-~l~---GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~-~~i~~~~g~~-- 101 (764)
T KOG1063|consen 29 AFGAGPAIAVADPEKILIVT-TLD---GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL-IKIYTIQGHC-- 101 (764)
T ss_pred EecCCceEEEeCcccceeEE-ecc---CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe-EEEEeecCcc--
Confidence 33445667778877763332 223 4999999999999887 899999999999999983322 2222333332
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCC-CceeeEEecc-CCCceEEEecCCC
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGG-RRVWSVDYSK-GDPVLGASGSDDG 165 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~-~~v~~i~~~~-~~~~l~~~~~~dg 165 (366)
+.++++... .........|+.+.+||.+..+ ....+....+ .-..|+++.+ ++..+++.|+.+.
T Consensus 102 ----------~~~~cv~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~ 169 (764)
T KOG1063|consen 102 ----------KECVCVVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF 169 (764)
T ss_pred ----------eeEEEEEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce
Confidence 444555443 2233333679999999995554 2222222222 1234566666 5667778888888
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCCC----------------CC--
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKMV----------------DP-- 225 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~----------------~~-- 225 (366)
.|.++.-. ..+........+|.+.|.+++|...+. .++++++.|..|+||.+.-.. .+
T Consensus 170 ~v~~~s~~--~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 170 VVDLYSSS--ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF 247 (764)
T ss_pred EEEEeccC--CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence 89998877 445555555669999999999987553 688999999999999875321 00
Q ss_pred --e----------eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc--eee-----eeecccceeeeEEEEEe
Q 017773 226 --V----------LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR--VIR-----TYKGHVNNRNFVGLSVW 285 (366)
Q Consensus 226 --~----------~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~~ 285 (366)
. ..+.+|...|+++.|+ .+..|++++.|.++.+|...+.. -+. ..-+.... .....|+
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G--F~g~lw~ 325 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG--FWGGLWS 325 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccc--eeeEEEc
Confidence 1 1124899999999999 77789999999999999876541 111 12222222 3344456
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
|+++.+++-+..|..++|.... +..+.. .....||.+.|++++|+| .|.+|++.|.|.+-|+|-.-
T Consensus 326 ~n~~~ii~~g~~Gg~hlWkt~d-~~~w~~----~~~iSGH~~~V~dv~W~p---sGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 326 PNSNVIIAHGRTGGFHLWKTKD-KTFWTQ----EPVISGHVDGVKDVDWDP---SGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred CCCCEEEEecccCcEEEEeccC-ccceee----ccccccccccceeeeecC---CCCEEEEeccccceeeeccc
Confidence 9999999999999999999322 122222 234489999999999999 77799999999999998654
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.6e-25 Score=170.21 Aligned_cols=217 Identities=17% Similarity=0.214 Sum_probs=164.7
Q ss_pred EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 135 FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 135 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
..+++|.+ .|++++|+.+|++| ++++.|+.|++|+++.-..+..+.+...-..+..+.+.|.||...++++.-...++
T Consensus 80 ~~LKgH~~-~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKK-EVTDVAFSSDGKKL-ATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCC-ceeeeEEcCCCcee-EEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 35678888 99999999999998 99999999999999832222222233222233678899999987777777777889
Q ss_pred EEEecCCCCC---Ce--------eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE
Q 017773 215 YAYDVRKMVD---PV--------LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 215 ~i~d~~~~~~---~~--------~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
++|-+..... +. ..-+.|+..+..+-.. ++.++++++.|..|.+|+++ |+.+..+......-...++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9998754211 11 1123356667676666 78899999999999999998 8999888876655555666
Q ss_pred EEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 283 SVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 283 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+ |+|+++++++..-.|++|.+--++.-...+......+.+|+..|..++|+| +...+++.+.||+++|||.+
T Consensus 237 S--P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 237 S--PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred C--CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC---CcceeEEEecCCcEEEeecc
Confidence 6 999999999999999999975332211112333456689999999999999 77799999999999999975
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=174.49 Aligned_cols=260 Identities=20% Similarity=0.225 Sum_probs=199.7
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEecCCCc
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
..+..+.++|++++|+|.....++++|..-|+|-+||+.+. .-+..+..|.. +|.++.|+|.+...+++.+.||+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-cccceEecCCChhheeeeccCce
Confidence 34556788999999999855578999999999999999532 23455666766 99999999988777799999999
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CC
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DV 244 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~ 244 (366)
|++-|++ .......+........+.++.|+.+. ..++.+..=|...+||+|+.......+..|...|..++++ ..
T Consensus 259 iR~~D~~--~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 259 IRLQDFE--GNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeeeec--chhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 9999999 33333333332344578888998887 5666666667999999999877677888899999999998 77
Q ss_pred CEEEEEeCCCcEEEEecCCCc----eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee----cCceEEEEec
Q 017773 245 DTLVTAGTDGCLKLWNVNDSR----VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR----WGEPVWVHDF 316 (366)
Q Consensus 245 ~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~ 316 (366)
.+|+|++.|++.+|||++... ++-....|...|....|+ |.+..|++.+.|..|+|||.. .-.+...+.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS--Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~- 412 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS--PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP- 412 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc--CCCCceEeeccCCceEEeecccccccCCccceee-
Confidence 899999999999999998753 223344588888888777 888889999999999999983 333333332
Q ss_pred ccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 317 EPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+......|. .....+|.| +..+++.|-.-..|-|++-+.++
T Consensus 413 -Hn~~t~Rwl-T~fKA~W~P---~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 413 -HNNRTGRWL-TPFKAAWDP---DYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred -ccCcccccc-cchhheeCC---CccEEEEeccCcceeEEcCCCCE
Confidence 211122232 244678999 77899999998899999988876
No 154
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.2e-23 Score=161.84 Aligned_cols=250 Identities=17% Similarity=0.260 Sum_probs=195.6
Q ss_pred CccCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCC-CcEEE
Q 017773 38 NAAVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTS-GRVLG 115 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~ 115 (366)
..+|+-.|.++.|-| |.-++.+++.|.++++||.++.+... .+... +.|++-+|+|-.. ..++|
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~---~F~me-----------~~VYshamSp~a~sHcLiA 162 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV---DFKME-----------GKVYSHAMSPMAMSHCLIA 162 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---EeecC-----------ceeehhhcChhhhcceEEE
Confidence 334899999999999 44588899999999999999866543 33322 4588888888522 45788
Q ss_pred EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-----------
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ----------- 184 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~----------- 184 (366)
+|..+-.|++-|+.+|.....+.+|.+ .|.++.|+|...+++++|+.||.|++||++..+ .+...+.
T Consensus 163 ~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILK 240 (397)
T ss_pred EecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCcccc
Confidence 889999999999999999999999998 999999999999999999999999999998321 2332221
Q ss_pred -CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccC---cEEEEEEcCCCEEEEEeCCCcEEE
Q 017773 185 -PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRK---TVTYIRFLDVDTLVTAGTDGCLKL 258 (366)
Q Consensus 185 -~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~l~~~~~d~~i~i 258 (366)
...|.+.+..++|..++ .++++++.|..+++|+..++...+..+-. |+. .-..+...+...++---.++.+.+
T Consensus 241 ~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lal 319 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLAL 319 (397)
T ss_pred ccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEE
Confidence 23577889999999999 78899999999999999887544333211 211 111122114555665566799999
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.+-++..+..+.+|...+.+..+. |+-+...+|..|+.|..|-..
T Consensus 320 l~~~sgs~ir~l~~h~k~i~c~~~~--~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 320 LNLLEGSFVRRLSTHLKRINCAAYR--PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEccCceEEEeeecccceeeEEeec--CchhhhhccccCCcccccccc
Confidence 9999999999999997777777776 888899999999999999863
No 155
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=168.51 Aligned_cols=304 Identities=18% Similarity=0.274 Sum_probs=223.2
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceeccccc--ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDH--PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
..+|.+.|+++.|+.++++||+|+.|..+++|+++..-... ..+.+.+| .|.+.|.|++|... +..++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~--------~H~SNIF~L~F~~~--N~~~~ 121 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH--------PHRSNIFSLEFDLE--NRFLY 121 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC--------ccccceEEEEEccC--CeeEe
Confidence 34599999999999999999999999999999987532221 12222332 24578999999998 89999
Q ss_pred EEcCCCcEEEEeCCCCceeEeeecCC-CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERDEHG-GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
+|..+++|..-|+++.+.+..+.... .+.|..+..+|..+.+ ++.+.++.|.+||.+.. ......+-.........+
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~-~~~t~~~~V~~~D~Rd~-~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTL-IVVTRAKLVSFIDNRDR-QNPISLVLPANSGKNFYT 199 (609)
T ss_pred cCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceE-EEEecCceEEEEeccCC-CCCCceeeecCCCcccee
Confidence 99999999999999988777664433 2379999999997766 89999999999999932 223333333344557889
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc------CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce-
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR------KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV- 266 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~- 266 (366)
+.|+|..+.+|++.+..+-+-+||.+....++....+.. ..-..+.|+ +|..|.+--....-.+||+.+.++
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 999999989999999999999999998765554433221 122567788 888888877777777899887543
Q ss_pred eeeeecccc-------eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE---------------EEecccccccCC
Q 017773 267 IRTYKGHVN-------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW---------------VHDFEPVTAAGS 324 (366)
Q Consensus 267 ~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~~~~~ 324 (366)
+.++. |.. .+..++|. +...+++|+.+-.|++|.+....... .+--.....+++
T Consensus 280 V~k~D-~N~~GY~N~~T~KS~~F~---~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 280 VLKSD-HNPNGYCNIKTIKSMTFI---DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred eEecc-CCCCcceeeeeeeeeeee---cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 33333 211 12333443 55569999999999999985321110 011223456689
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
|...++.+.|+| ...+|++.|....++||.--.
T Consensus 356 HRSv~NQVRF~~---H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 356 HRSVPNQVRFSQ---HNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ccccccceeecC---CcceEeccchhhheecccccc
Confidence 999999999999 556999999999999997543
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.7e-24 Score=164.39 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=186.8
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
..|+.|++. |.+||+|..||.|.|||+.+...-..+..|.. +|.+++|+++|+.| ++++.|..+.+||+. .+.+
T Consensus 26 a~~~~Fs~~--G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS~dgr~L-ltsS~D~si~lwDl~--~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRW--GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWSRDGRKL-LTSSRDWSIKLWDLL--KGSP 99 (405)
T ss_pred cceEEeccC--cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEecCCCCEe-eeecCCceeEEEecc--CCCc
Confidence 789999999 99999999999999999999988888889988 99999999999998 999999999999999 7889
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc---cCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH---RKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
++.+.... +|....|+|...+..++.-.+..-.+-++..+...+...... +....+..|. .|+++++|...|.
T Consensus 100 l~rirf~s---pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 100 LKRIRFDS---PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred eeEEEccC---ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 99888654 999999999876666666566666666665431111111110 1111223466 8999999999999
Q ss_pred EEEEecCCCceeeeeeccc-ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE---EEEecccccccCCCCceeeE
Q 017773 256 LKLWNVNDSRVIRTYKGHV-NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV---WVHDFEPVTAAGSERGFVSS 331 (366)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~ 331 (366)
+.++|..+.+++..++... ..|..+-++ ..|++|+.-+.|..|+.|+++.-... ...+..+...-.-....-.+
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s--~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVS--RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEe--ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999999998887655 566666666 89999999999999999998621100 00000000000112234557
Q ss_pred EEeeccCCCceEEEEeCC-CCcEEEEEecccCC
Q 017773 332 VCWRRVGEDECTLVAGGS-DGLLHVFVGKKKPL 363 (366)
Q Consensus 332 ~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~l 363 (366)
++|+. +|.++++++. ...++||.-..+.|
T Consensus 255 ccfs~---dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 255 CCFSG---DGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred eeecC---CccEEEeccccceeEEEEecCCcce
Confidence 78887 8889887764 46799999776655
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.7e-24 Score=175.71 Aligned_cols=221 Identities=15% Similarity=0.219 Sum_probs=186.9
Q ss_pred EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEE
Q 017773 46 GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVME 125 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 125 (366)
.|++......|+++|+..+.|+|||++.....+ .+.+|...|+++.++.. ..+||+++..|.|.|
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr-------------~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHR-------------FLKDHQSTVTYVDYNNT--DEYIASVSDGGDIII 147 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhh-------------hccCCcceeEEEEecCC--cceeEEeccCCcEEE
Confidence 444444445899999999999999998543332 34556678999999998 899999999999999
Q ss_pred EeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE
Q 017773 126 YDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 205 (366)
..+.++....++....+..|.-+.|++..+.++.+++.+|.|.+||+. ...+...+. ..|..+...++|+|..+.+|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~--g~sp~~~~~-~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ--GMSPIFHAS-EAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc--CCCcccchh-hhccCCcCcceecCCccceE
Confidence 999999888888777666788999999999999999999999999998 555555544 36888999999999988999
Q ss_pred EEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEE
Q 017773 206 AAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 206 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 283 (366)
++.+.|..|++||++.. +....+. ...+...++|. +|.+|++|...|.|..||++.. .++..+..|...|++++|.
T Consensus 225 vsVG~Dkki~~yD~~s~-~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQ-ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred EEecccceEEEeecccc-cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 99999999999999975 3444443 45689999999 9999999999999999999975 7889999999999999999
Q ss_pred Eec
Q 017773 284 VWR 286 (366)
Q Consensus 284 ~~~ 286 (366)
++|
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 665
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=169.97 Aligned_cols=271 Identities=16% Similarity=0.241 Sum_probs=213.4
Q ss_pred cccceeeeeecCCCceeeecCCCCcc-----------------CCCceEEEEECCCCC-EEEEeecCCeEEEEEceeccc
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAA-----------------VSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLV 76 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~-----------------h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~ 76 (366)
...++++.|++....++++..++.+. -..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 45667777777777776666665443 478899999999998 899999999999999988665
Q ss_pred ccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCc
Q 017773 77 DHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 156 (366)
... ....++. ...+.....+|+ +++|+..+..|.|.+....+++.+..++... .|..++|+.+++.
T Consensus 293 ~k~-~~~~g~e---------~~~~e~FeVShd--~~fia~~G~~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 293 TKL-KPPYGVE---------EKSMERFEVSHD--SNFIAIAGNNGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKE 358 (514)
T ss_pred ccc-cCCCCcc---------cchhheeEecCC--CCeEEEcccCceEEeehhhhhhhhheeeecc--EEeeEEEecCCcE
Confidence 431 1122222 134777888999 9999999999999999999999888887765 8999999999988
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC-----CCCCeeEeec
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK-----MVDPVLVFDG 231 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~ 231 (366)
+ ++++.+|.|.+||++ ...+++.+.-.+. -.-++++.++++ .++|+|+..|.|.|||.++ ..+|+..+..
T Consensus 359 l-~~~~~~GeV~v~nl~--~~~~~~rf~D~G~-v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 359 L-LASGGTGEVYVWNLR--QNSCLHRFVDDGS-VHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred E-EEEcCCceEEEEecC--CcceEEEEeecCc-cceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence 8 666678999999999 6788888865432 234667778988 7999999999999999653 2367777777
Q ss_pred ccCcEEEEEEc-CCCEEEEEe--CCCcEEEEecCCCceeeeeeccc---ceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 232 HRKTVTYIRFL-DVDTLVTAG--TDGCLKLWNVNDSRVIRTYKGHV---NNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 232 ~~~~v~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
-...|+++.|+ +.++|+.++ .+..+++--+.+......+.... +.+++++|+ |.+.+||.|..+|++.+|.+
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS--P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS--PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec--CCCceEEeecCCCceeeEee
Confidence 77889999999 888887776 46679998888776666665433 345677766 99999999999999999987
Q ss_pred e
Q 017773 306 R 306 (366)
Q Consensus 306 ~ 306 (366)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.4e-23 Score=176.03 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=98.5
Q ss_pred cEEEEEEc--CCCEEEEEeCCCcEEEEecCCC-------ceeeeeecccceeeeEEEEEec-CCCeEEEecCCCeEEEEE
Q 017773 235 TVTYIRFL--DVDTLVTAGTDGCLKLWNVNDS-------RVIRTYKGHVNNRNFVGLSVWR-HGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 235 ~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd 304 (366)
.|+.+.|. +...|+.++.||.|++|.+..+ .+...+..|...|+.+.|. | -...|++++.|-+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfH--PLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFH--PLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEec--chhhhHhhhhhccceeeeee
Confidence 35667776 7788999999999999998754 4567788899999988887 5 457899999999999999
Q ss_pred eecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 305 VRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+.+++....+ .+|.+.|.+++|+| ||+.+|+.+.||+|++|+.+..
T Consensus 707 l~~~~~~~~l--------~gHtdqIf~~AWSp---dGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 707 LANAKLYSRL--------VGHTDQIFGIAWSP---DGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhhhhee--------ccCcCceeEEEECC---CCcceeeeecCceEEEeCCCCC
Confidence 9998876655 78999999999999 9999999999999999997664
No 160
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=2.1e-23 Score=160.24 Aligned_cols=266 Identities=17% Similarity=0.231 Sum_probs=198.9
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCC-----CEEEEeecCCeEEEEEceecccccc-eeeeecCce
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSD-----SVFATGGIARKIRIYNIKSVLVDHP-VVAVVDHSK 88 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-----~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~ 88 (366)
.+.+.++..+.+++.++.... ..|.-+++.+.|.|+. .+|||.+ ..+|+|.+...+.... ...+..+.
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a~---fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~k- 145 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDAN---FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNK- 145 (364)
T ss_pred CCeeEEEEEccCCCceeccCC---CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCc-
Confidence 356667777766666654432 4599999999999986 4677765 3799999875332221 11122221
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce---eEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP---IFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
...+.+++++..|+.- +-+++.+.+-|-+..|||++++.. ...+-.|.+ +|..++|...+..+|++.+.||
T Consensus 146 ----ns~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK-EV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 146 ----NSEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK-EVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred ----ccccCCcccccccccC-CcceeEeecccCeEEEEEEeeccccceeeEEEecCc-ceeEEEeccCccceEEEecCCC
Confidence 2345678999999976 468999999999999999998743 455667777 9999999999899999999999
Q ss_pred cEEEeeCCCCCCcee-EeecCCCCCCCeEEEEEcCCCCcEEEEEec-CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-
Q 017773 166 TMQMWDPRCDGGKCV-STVQPSASRSAVCCVEFHPFGSSLVAAGCA-DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL- 242 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~- 242 (366)
.+++||++ ..+-. ..++.+....+...++|+++..+++|+-.. ...|.|.|+|....++..+.+|.+.|+.++|.
T Consensus 220 SvRmFDLR--~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 220 SVRMFDLR--SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred cEEEEEec--ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 99999999 33322 223333335688999999998888887554 46799999999989999999999999999997
Q ss_pred -CCCEEEEEeCCCcEEEEecCCC------ceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 243 -DVDTLVTAGTDGCLKLWNVNDS------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 243 -~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
....+++++.|..+.+||+.+. .++..+. ..+.|+.++|+. ..+..++.+..
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~-~~~Dwiai~~~ 356 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS-SQPDWIAICFG 356 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc-cCCCEEEEEec
Confidence 7789999999999999999764 2333333 345778888873 35567776654
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=163.63 Aligned_cols=284 Identities=16% Similarity=0.255 Sum_probs=195.5
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI 134 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 134 (366)
..+|++...|.|++||..+++... . +.+++..++.+.|..+.....+.+++.||+|++||+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~----------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---E----------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---e----------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 568889899999999999866555 3 334455688899987544789999999999999999876544
Q ss_pred Ee--eecCCCCceeeEEeccCCCceEEEecC----CCcEEEeeCCCCCCce-eEeecCCCCCCCeEEEEEcCCCCcEEEE
Q 017773 135 FE--RDEHGGRRVWSVDYSKGDPVLGASGSD----DGTMQMWDPRCDGGKC-VSTVQPSASRSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 135 ~~--~~~~~~~~v~~i~~~~~~~~l~~~~~~----dg~v~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 207 (366)
.. ...+.+.+..+++.+-.++.+ ++|.. +-.|.+||++ ..+. +..+. ..|.+.|++++|+|..+++|++
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii-~~GtE~~~s~A~v~lwDvR--~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNII-ACGTELTRSDASVVLWDVR--SEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeE-EeccccccCceEEEEEEec--cccchhhhhh-hhccCcceeEEecCCCCCeEEe
Confidence 43 344443366777776555544 77653 6679999999 4433 44443 3688999999999999999999
Q ss_pred EecCCeEEEEecCCCCC--CeeEeecccCcEEEEEEc-CC-CEEEEEeCCCcEEEEecCCCceeeeeecccc--------
Q 017773 208 GCADKKAYAYDVRKMVD--PVLVFDGHRKTVTYIRFL-DV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-------- 275 (366)
Q Consensus 208 ~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------- 275 (366)
|+.||.|.+||+..... .+...-.|...|.++.|. ++ +.+.+-+..++..+|+++.+.+...+....-
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 99999999999976521 222333477789999998 43 3688888899999999998875544432210
Q ss_pred -e-eeeEEEEEecCCCeEEEecC-CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 276 -N-RNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 276 -~-~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
. -+.+......+...++.++. -|...++-+..-+..... .++.....+|..-|+++.|.. .+.++.|||+||.
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~-~~~a~l~g~~~eiVR~i~~~~---~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL-TEPAILQGGHEEIVRDILFDV---KNDVLYTGGEDGL 339 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeeccccccc-CccccccCCcHHHHHHHhhhc---ccceeeccCCCce
Confidence 0 01121111123444444443 566666655421111111 111222256888899999987 6679999999999
Q ss_pred EEEEEec
Q 017773 353 LHVFVGK 359 (366)
Q Consensus 353 i~iw~~~ 359 (366)
+.+|..+
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999853
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=1.3e-22 Score=162.65 Aligned_cols=297 Identities=20% Similarity=0.309 Sum_probs=211.4
Q ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
..+|.++.|.++.. .+|||+.|..|+||.+........... ......+..|...|+++.|+|+ |++|++|+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~----V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~ 86 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK----VEYLSSLSRHTRAVNVVRFSPD--GELLASGGDG 86 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee----EEEeecccCCcceeEEEEEcCC--cCeeeecCCC
Confidence 67899999999876 999999999999999987654431111 1122346678889999999999 9999999999
Q ss_pred CcEEEEeCC--------C-----C---ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec
Q 017773 121 GVVMEYDLE--------K-----K---VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 121 g~i~iw~~~--------~-----~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
|.|.+|... + . .....+.+|.. .|..++|+|++..+ ++++.|..+++||+. .++....+.
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l-~s~s~dns~~l~Dv~--~G~l~~~~~ 162 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFL-VSGSVDNSVRLWDVH--AGQLLAILD 162 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCcee-eeeeccceEEEEEec--cceeEeecc
Confidence 999999876 2 1 12334556666 89999999999988 999999999999999 888888877
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee----------c---------cc----CcEEEEEE
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD----------G---------HR----KTVTYIRF 241 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------~---------~~----~~v~~~~~ 241 (366)
.|...+..++|.|.+ +++++-+.|...+.+.+... +.+.... . |. .-...++|
T Consensus 163 --dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 163 --DHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred --ccccccceeecchhh-hhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 566699999999987 88888888887777766432 1111100 0 11 12344566
Q ss_pred c-CCCEEEEEe----CCC-----cEEEEecCC-CceeeeeecccceeeeEEEEE----------------ecCCCeEEEe
Q 017773 242 L-DVDTLVTAG----TDG-----CLKLWNVND-SRVIRTYKGHVNNRNFVGLSV----------------WRHGGLLGCG 294 (366)
Q Consensus 242 ~-~~~~l~~~~----~d~-----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~ 294 (366)
+ +|.++++.+ .++ ..++|+-+. .++...+.....+...+.+++ -|-...++.+
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 7 777777654 112 234444332 244455554444333333331 0223345555
Q ss_pred cCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 295 SETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
+. +.|++||.++-.++.... .-|-..|+.++|++ ||..|+..+.||...+-..++.+|
T Consensus 319 t~-~svyvydtq~~~P~~~v~-------nihy~~iTDiaws~---dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 319 TK-NSVYVYDTQTLEPLAVVD-------NIHYSAITDIAWSD---DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ec-ceEEEeccccccceEEEe-------eeeeeeecceeecC---CCcEEEEeccCCceEEEEEcchhc
Confidence 54 579999999988887764 34678899999999 999999999999988887776554
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=8.5e-23 Score=156.78 Aligned_cols=275 Identities=20% Similarity=0.203 Sum_probs=204.8
Q ss_pred ccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCC-CEEEEeecC-------CeEEEEEceecccccceeeeecCc
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSD-SVFATGGIA-------RKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
+.+..+.++.++..+.. .....|.+.|..++-+|-. ++|+|+..+ ..+.||.+..........++..-
T Consensus 40 NqVhll~~d~e~s~l~s---kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v- 115 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLS---KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV- 115 (370)
T ss_pred ceeEEEEecCccchhhh---hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh-
Confidence 66777788887777653 3455689999999999955 566666442 24789998765443221111110
Q ss_pred eeceeee-ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce-eEeeec-----CCCCceeeEEeccC-CCceEE
Q 017773 88 KVCDYYI-CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP-IFERDE-----HGGRRVWSVDYSKG-DPVLGA 159 (366)
Q Consensus 88 ~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-----~~~~~v~~i~~~~~-~~~l~~ 159 (366)
..+. .+-+.|.|+.|.|+ +..+++-. |..|.+|+++.+.. +..+.. +.. ..++-+|+|. .... +
T Consensus 116 ---~~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~-~ftsg~WspHHdgnq-v 187 (370)
T KOG1007|consen 116 ---ASLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH-SFTSGAWSPHHDGNQ-V 187 (370)
T ss_pred ---hcCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccc-eecccccCCCCccce-E
Confidence 1111 23357999999998 88888776 88899999988755 333322 222 6778899983 3333 3
Q ss_pred EecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEE
Q 017773 160 SGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYI 239 (366)
Q Consensus 160 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 239 (366)
....|+++..||++ +.++...+.. .|...+..+.|+|+-..+|++|+.||.|++||.|+...++..+.+|...|.++
T Consensus 188 ~tt~d~tl~~~D~R--T~~~~~sI~d-AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLR--TMKKNNSIED-AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred EEeCCCcEEEEEcc--chhhhcchhh-hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 44468999999999 6666666653 56679999999999888999999999999999999988999999999999999
Q ss_pred EEc--CCCEEEEEeCCCcEEEEecCCC-----------------------------ceeeeeecccceeeeEEEEEecCC
Q 017773 240 RFL--DVDTLVTAGTDGCLKLWNVNDS-----------------------------RVIRTYKGHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 240 ~~~--~~~~l~~~~~d~~i~iwd~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 288 (366)
.|+ ..+++++++.|..|.+|...+- ..+.++..|...|++++|+ +.|.
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS-sadP 343 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS-SADP 343 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec-cCCC
Confidence 998 6789999999999999976321 1334677789999999997 3577
Q ss_pred CeEEEecCCCeEEEEEee
Q 017773 289 GLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~ 306 (366)
-.+|+-+.||++.|=.+.
T Consensus 344 WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccCceEEeecCC
Confidence 788899999999885543
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-22 Score=178.92 Aligned_cols=298 Identities=19% Similarity=0.291 Sum_probs=215.2
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
.+-..+.|+|-...+++++..-.|++||.+.++... .+..+. .....|+.+.+-.+.+..++++|+.||.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~---~F~n~~-------~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLN---GFDNGA-------FPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceec---cccCCC-------CCCCccceeeeecccchhheeeeccCce
Confidence 356788899988899999877789999998876544 222222 1235699999988767889999999999
Q ss_pred EEEEeCCCC-----ceeEeee-------cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 123 VMEYDLEKK-----VPIFERD-------EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 123 i~iw~~~~~-----~~~~~~~-------~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
|+||+--.. +.+.... +..+.. .-+.|.....+| ++++.-..|+|||.. .......+... ...
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~L-l~tGd~r~IRIWDa~--~E~~~~diP~~-s~t 1209 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHL-LVTGDVRSIRIWDAH--KEQVVADIPYG-SST 1209 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeE-EecCCeeEEEEEecc--cceeEeecccC-CCc
Confidence 999964322 2222211 111112 346788888888 555557899999998 66666666543 455
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC--CeeEeecccCc--EEEEEEc-CCC-EEEEEeCCCcEEEEecCCC
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD--PVLVFDGHRKT--VTYIRFL-DVD-TLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~ 264 (366)
.++++.-+-.+++++++|..||.|++||.|.... .+...+.|+.. |..+.+. .|- .|++|+.||.|++||++..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 7777776655558999999999999999997633 67778889887 9999887 343 5999999999999999985
Q ss_pred cee--eeeeccc--c-eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCC
Q 017773 265 RVI--RTYKGHV--N-NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 265 ~~~--~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
... .++..|. + ..+++.+. ++...+|+|+. +.|+||++. |+.+..+...+ .+.....+.+.+++|+|..
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH--~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~-~F~~q~~gs~scL~FHP~~- 1363 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVH--EHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP-GFMGQRIGSVSCLAFHPHR- 1363 (1387)
T ss_pred cccccceeeeccccCccceeeeec--cCCCeeeecCc-ceEEEEecC-hhhhcccccCc-ccccCcCCCcceeeecchh-
Confidence 222 2222232 2 24555554 99999999998 999999986 45554444322 3334455678999999944
Q ss_pred CceEEEEeCCCCcEEEEEecccCC
Q 017773 340 DECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 340 ~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
-+||+|..|..|.||..++..+
T Consensus 1364 --~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1364 --LLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred --HhhhhccCCceEEEeecCCcCC
Confidence 4999999999999999887654
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=170.84 Aligned_cols=274 Identities=16% Similarity=0.204 Sum_probs=203.3
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
.|..++|-|||..|+.+. +..+.+||...+.... ++.+|. ..|+|++|+.+ |+++++|+.|..|
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHK----------DtVycVAys~d--GkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHK----------DTVYCVAYAKD--GKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---cccccc----------ceEEEEEEccC--CceeccCCCceeE
Confidence 799999999998777765 4579999999887766 555554 57999999999 9999999999999
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
.+|+..- ...++..++..|.|+.|+|-...+ ++++.+ ..-+|... .+.+...+ ....+.+.+|..+| .
T Consensus 78 I~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~L-asCsLs-dFglWS~~---qK~V~K~k---ss~R~~~CsWtnDG-q 145 (1081)
T KOG1538|consen 78 IIWTSKL---EGILKYSHNDAIQCMSFNPITHQL-ASCSLS-DFGLWSPE---QKSVSKHK---SSSRIICCSWTNDG-Q 145 (1081)
T ss_pred EEecccc---cceeeeccCCeeeEeecCchHHHh-hhcchh-hccccChh---hhhHHhhh---hheeEEEeeecCCC-c
Confidence 9997643 233333333399999999998887 887754 47788876 33333333 23489999999999 8
Q ss_pred EEEEEecCCeEEEEecCCCCC-CeeEeecccCcEEEEEEc-C-----CCEEEEEeCCCcEEEEecCCCceeeeeecccce
Q 017773 204 LVAAGCADKKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFL-D-----VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN 276 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~-~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (366)
+++.|-.+|+|.+-+-....+ .+.+..+.+.+|.+++|+ . .+.++...-..++.+|.+. |+.+..-+.-.-.
T Consensus 146 ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~Fd 224 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFD 224 (1081)
T ss_pred EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCC
Confidence 999999999999987554321 122233577899999997 2 2467777777777777764 3333322211112
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
..+++.. ++|.++..|+.|+.+++|-. .|-.+.++ .....+|+.++..| ++++++.|+.||+|-.|
T Consensus 225 P~CisYf--~NGEy~LiGGsdk~L~~fTR-~GvrLGTv--------g~~D~WIWtV~~~P---NsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 225 PCCISYF--TNGEYILLGGSDKQLSLFTR-DGVRLGTV--------GEQDSWIWTVQAKP---NSQYVVVGCQDGTIACY 290 (1081)
T ss_pred chhheec--cCCcEEEEccCCCceEEEee-cCeEEeec--------cccceeEEEEEEcc---CCceEEEEEccCeeehh
Confidence 2345554 99999999999999999864 45555444 33567999999999 88899999999999999
Q ss_pred Eecc
Q 017773 357 VGKK 360 (366)
Q Consensus 357 ~~~~ 360 (366)
++-.
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8753
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=146.89 Aligned_cols=255 Identities=16% Similarity=0.236 Sum_probs=179.6
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
.|.+-+++|.+++|++|..+|.|-+..+++..... .........-...+|.++|+.++|.. .+|++|+ ||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a~~~gk~~iv~eqahdgpiy~~~f~d----~~Lls~g-dG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---AEPPGKLKIVPEQAHDGPIYYLAFHD----DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---cCCCCCcceeeccccCCCeeeeeeeh----hheeecc-CceE
Confidence 46677899999999999999999999987643322 11111222223357778888888874 3666666 5888
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
+-|..+..... .+.=.+|.+..+ ......+. ..|+++...|..+.
T Consensus 84 ~gw~W~E~~es-----------------------------~~~K~lwe~~~P--~~~~~~ev----PeINam~ldP~enS 128 (325)
T KOG0649|consen 84 YGWEWNEEEES-----------------------------LATKRLWEVKIP--MQVDAVEV----PEINAMWLDPSENS 128 (325)
T ss_pred EEeeehhhhhh-----------------------------ccchhhhhhcCc--cccCcccC----CccceeEeccCCCc
Confidence 77766432211 112234444411 11111111 27899999998744
Q ss_pred EEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccce------
Q 017773 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN------ 276 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------ 276 (366)
++.+ +.|+.++.||++++ +..+.+++|...+.++.-- ....+++|+.||++|+||.++++.+..+.....+
T Consensus 129 i~~A-gGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 129 ILFA-GGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred EEEe-cCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence 5444 48999999999998 7899999999999999884 6678999999999999999999988887643221
Q ss_pred --eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 277 --RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 277 --~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
-...+++ -+..+|++|+. ..+.+|++++.++...+.++ +++..+.|.. ..++++|..+.|.
T Consensus 207 ~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfpip---------a~v~~v~F~~-----d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 207 WGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP---------ARVHLVDFVD-----DCVLIGGEGNHVQ 269 (325)
T ss_pred cCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEecc---------cceeEeeeec-----ceEEEecccccee
Confidence 2334555 56788888865 57999999999998887653 5688888853 3777788777788
Q ss_pred EEEecc
Q 017773 355 VFVGKK 360 (366)
Q Consensus 355 iw~~~~ 360 (366)
-|.+.+
T Consensus 270 ~~~l~G 275 (325)
T KOG0649|consen 270 SYTLNG 275 (325)
T ss_pred eeeecc
Confidence 887654
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.2e-22 Score=167.22 Aligned_cols=247 Identities=16% Similarity=0.197 Sum_probs=190.6
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
..+.+|.+.|.++...|. |.+|++|+.||+|++|.+.++.++.++.... .|.|++|+|.+..-+++....+.+.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCceEEe
Confidence 467899999999999998 9999999999999999999999999987765 899999999876554444445555555
Q ss_pred eCCCC-------CCceeE-------------eec-------------CCCCCCCeEEEEEcCCCCcEEEEEecC---CeE
Q 017773 171 DPRCD-------GGKCVS-------------TVQ-------------PSASRSAVCCVEFHPFGSSLVAAGCAD---KKA 214 (366)
Q Consensus 171 d~~~~-------~~~~~~-------------~~~-------------~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i 214 (366)
+..-. +...+. ... ...|...|..+.|+..| .+|++...+ ..|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceE
Confidence 54310 000000 000 01355689999999999 788876553 578
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEE
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
.|+++... .....|....+.+.++.|+ ...+|+.++ ...|++||+...++++.+......+..++++ |.|..|+.
T Consensus 549 liHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msih--p~GDnli~ 624 (733)
T KOG0650|consen 549 LIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIH--PNGDNLIL 624 (733)
T ss_pred EEEecccc-cccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeec--CCCCeEEE
Confidence 99998776 3445555567889999999 556666665 4679999999998888888777777777666 99999999
Q ss_pred ecCCCeEEEEEeecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 294 GSETNQVFVYDVRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 294 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
|+.|+.+..+|+.-+ ++...+ ..|...+++++|++.-| ++++|+.||.+.|+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~l--------r~H~~avr~Va~H~ryP---Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTL--------RLHEKAVRSVAFHKRYP---LFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHh--------hhhhhhhhhhhhccccc---eeeeecCCCcEEEEe
Confidence 999999999999754 333333 56899999999999555 999999999999985
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-20 Score=165.56 Aligned_cols=315 Identities=15% Similarity=0.148 Sum_probs=219.2
Q ss_pred eeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCc
Q 017773 20 RCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAK 99 (366)
Q Consensus 20 ~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
...|......-.....+....|...+++.++||+++++|+|..||.|.+|.--.. ......+..+..|..+
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc---------ccccccceEEEecccc
Confidence 3455555544445555666779999999999999999999999999999974331 1112233456667789
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
|.+++|+++ |.+|++|+..+.+.+|.+++++ +.+-..-+++|..+.++|++... +....|+.|.+.... +...
T Consensus 254 V~~L~fS~~--G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~-sl~~~DNqI~li~~~--dl~~ 326 (792)
T KOG1963|consen 254 VNSLSFSSD--GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLY-SLVLEDNQIHLIKAS--DLEI 326 (792)
T ss_pred cceeEEecC--CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeE-EEEecCceEEEEecc--chhh
Confidence 999999999 9999999999999999999988 33333333499999999999988 777789999998875 3333
Q ss_pred eEeecC---C------CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-----------cccCcEEEE
Q 017773 180 VSTVQP---S------ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-----------GHRKTVTYI 239 (366)
Q Consensus 180 ~~~~~~---~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~~v~~~ 239 (366)
...+.. . ...+-.+.++++|.- +.++-.+..|.|.+||+.+. ..+..+. .+...++.+
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAV 404 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeee
Confidence 222221 1 123467788999954 56777779999999999876 3333332 123356677
Q ss_pred EEc-CCCEEEEEe--------CCC--cEEEEecCCCc----eeeee-ecccceeeeEEEEEecCCCeEEEecCCCeEEEE
Q 017773 240 RFL-DVDTLVTAG--------TDG--CLKLWNVNDSR----VIRTY-KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVY 303 (366)
Q Consensus 240 ~~~-~~~~l~~~~--------~d~--~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 303 (366)
+.+ .+.+++|.- .|| .+++|-..... +...+ ..|.......++...+.....++++.||.+++|
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 776 788888864 333 57888765432 22222 346665555555533344488999999999999
Q ss_pred EeecC------ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 304 DVRWG------EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 304 d~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
-+... ...+....- -..|..++++++|+. ||.. ++.+.|++|.+||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i----~sy~k~~i~a~~fs~---dGsl-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAI----GSYHKTPITALCFSQ---DGSL-LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeee----eccccCcccchhhcC---CCcE-EEEecCCEEEEecCCC
Confidence 98432 222222111 123788999999998 8855 5566788999999887
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=1.8e-21 Score=169.83 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=200.1
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecC
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTP 97 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (366)
..+.|+........... .-...|+|+.|+|. ..++|.|..+|.|.+||+....... ..........|.
T Consensus 223 ~~~vW~~~~p~~Pe~~~----~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVL----ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHS 291 (555)
T ss_pred eEEEEecCCCCCceEEE----ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------CcccccccccCC
Confidence 67888877652211111 14788999999995 5788888999999999998765531 011112234578
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce-e----Eeeec------CCCCceeeEEeccCCCceEEEecCCCc
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP-I----FERDE------HGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~----~~~~~------~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
.+++.+.|..+..+.-+++++.||.|..|+++.-.. . ..... .....+++++|.+.....|+.|+.+|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 899999999875456699999999999998764321 1 11111 122378999999999888899999999
Q ss_pred EEEeeCCCCCCceeE----eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc
Q 017773 167 MQMWDPRCDGGKCVS----TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL 242 (366)
Q Consensus 167 v~~~d~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 242 (366)
|.--+....+..... ......|.++|.++.++|-+..++++++ |.+++||.......++..+..+...+++++||
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 987433311111101 1122257789999999999977777776 99999999884447888888888889999999
Q ss_pred --CCCEEEEEeCCCcEEEEecCCC--ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 243 --DVDTLVTAGTDGCLKLWNVNDS--RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 243 --~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
....|+++..||.|.+||+... .++.+...+....+.+.++ ++|+.|++|...|.+.+|++..
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s--~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS--PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecC--CCCcEEEEecCCCcEEEEEcCc
Confidence 6678999999999999999754 5666655554444555555 8899999999999999999953
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=2.1e-21 Score=149.34 Aligned_cols=293 Identities=15% Similarity=0.231 Sum_probs=205.7
Q ss_pred CCceEEEEECC--C-CCEEEEeec----CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCC---
Q 017773 42 SDSIGVIEFDP--S-DSVFATGGI----ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSG--- 111 (366)
Q Consensus 42 ~~~i~~~~~s~--~-~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 111 (366)
.-++.++.|+. + ..+||.|+. .+.|.|-.+....... . ......|+-+++.+.|.|+..|
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~-----~-----~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL-----V-----EDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce-----e-----ccCCCCCCCCccceEecCCccccCc
Confidence 45688899983 2 347888873 4567776665322111 0 0111346678999999998422
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeE----ee----ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC-CCceeEe
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPIF----ER----DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD-GGKCVST 182 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~~----~~----~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~-~~~~~~~ 182 (366)
++||+.+ ..+++|.+...+... .+ ..+...++++..|+.-...++.+++-|-+..+||++.. .+.....
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 4566654 469999987421111 11 12233489999999999888899999999999999932 1112222
Q ss_pred ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc--cCcEEEEEEc--CCCEEEEEeCCC-cEE
Q 017773 183 VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH--RKTVTYIRFL--DVDTLVTAGTDG-CLK 257 (366)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~--~~~~l~~~~~d~-~i~ 257 (366)
+ -.|...|..++|...+..++|+.+.||++++||+|........++.. ..+...++|+ +.+++++-..|. .|.
T Consensus 192 L--IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 192 L--IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred E--EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 2 26888999999999888899999999999999999874444444432 4678899998 778888877665 699
Q ss_pred EEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 258 LWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 258 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
+.|++.. .++.++++|...|+.++|++ .....|+++++|..+.+||+...-.- . ...+..... ..+.|+.+.|+|
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaP-hS~~hictaGDD~qaliWDl~q~~~~-~-~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAP-HSSSHICTAGDDCQALIWDLQQMPRE-N-GEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecC-CCCceeeecCCcceEEEEeccccccc-C-CCCchhhhh-ccceeeeeeecc
Confidence 9999986 78899999999999999994 25678999999999999999753220 0 011222222 467899999998
Q ss_pred cCCCceEEEEeCCCCcEEE
Q 017773 337 VGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 337 ~~~~~~~l~s~~~dg~i~i 355 (366)
..+| .++.+. +..+.|
T Consensus 346 ~~~D--wiai~~-~kklei 361 (364)
T KOG0290|consen 346 SQPD--WIAICF-GKKLEI 361 (364)
T ss_pred cCCC--EEEEEe-cCeeeE
Confidence 7665 566554 333443
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=7e-22 Score=154.11 Aligned_cols=261 Identities=18% Similarity=0.256 Sum_probs=196.9
Q ss_pred eeeeeecCCCceeeecCCCCcc----------------------------CCCceEEEEEC-------CCCCEEEEeecC
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAA----------------------------VSDSIGVIEFD-------PSDSVFATGGIA 63 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~----------------------------h~~~i~~~~~s-------~~~~~l~t~~~d 63 (366)
.-+.|+|++.-++...++..+. ..+.|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3467999988887766654322 34556676665 567899999999
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC-CCce--eEeee--
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE-KKVP--IFERD-- 138 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~--~~~~~-- 138 (366)
.-|++||.-+++............. -....+++|+|| |.+|++|. ...|+++|+. .|+. +....
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de--------~taAhsL~Fs~D--GeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDE--------YTAAHSLQFSPD--GEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred CceeeeeccccccccchhhhhhHHh--------hhhheeEEecCC--CCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999877553222211111 023578999999 99999876 6789999994 3321 11111
Q ss_pred --cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCeEE
Q 017773 139 --EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAY 215 (366)
Q Consensus 139 --~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~ 215 (366)
....+-+.+++|+|....+++.|+....+-|+.-. ...++..+- +|.+.|+-+.|.++| +.|++|. .+-.|.
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~--~~~pl~llg--gh~gGvThL~~~edG-n~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD--GRRPLQLLG--GHGGGVTHLQWCEDG-NKLFSGARKDDKIL 276 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecC--CCCceeeec--ccCCCeeeEEeccCc-CeecccccCCCeEE
Confidence 11223789999999988677999998888888877 677777776 788899999999999 5666665 578999
Q ss_pred EEecCCCCCCeeEeecccC-cEEEEEEc---CCCEEEEEeCCCcEEEEecCC-CceeeeeecccceeeeEEEEEecCCCe
Q 017773 216 AYDVRKMVDPVLVFDGHRK-TVTYIRFL---DVDTLVTAGTDGCLKLWNVND-SRVIRTYKGHVNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~-~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (366)
.||+|....++..+..|.. .-..|.|. .+++|++|+.||.|++||+++ +..+..+..+...++.+++. |--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln--P~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN--PIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecC--cccce
Confidence 9999998788888887776 44566664 788999999999999999998 67788888888888877777 88888
Q ss_pred EEEecCC
Q 017773 291 LGCGSET 297 (366)
Q Consensus 291 l~~~~~d 297 (366)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.90 E-value=5.7e-20 Score=146.01 Aligned_cols=238 Identities=14% Similarity=0.250 Sum_probs=188.0
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC-
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD- 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d- 120 (366)
...+..+.|+.+...|..|+.|| .++|+......-. +.. .....|..+-|+.. ++|..+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-------~~~------~~~~~IvEmLFSSS----LvaiV~~~q 66 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-------SKD------TEGVSIVEMLFSSS----LVAIVSIKQ 66 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------ccc------CCCeEEEEeecccc----eeEEEecCC
Confidence 45678888999999999999998 7888876543311 110 01124677778754 55544433
Q ss_pred -CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC-CCCCCeEEEEEc
Q 017773 121 -GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS-ASRSAVCCVEFH 198 (366)
Q Consensus 121 -g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 198 (366)
..+++.+...+..+..+...+ +|.++.++. ++| +++- ...|+|||++ +.+.+.++... .+...+.+++++
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~fpt--~IL~VrmNr--~RL-vV~L-ee~IyIydI~--~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFFPT--SILAVRMNR--KRL-VVCL-EESIYIYDIK--DMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred CceEEEEEcccCceEEEEecCC--ceEEEEEcc--ceE-EEEE-cccEEEEecc--cceeehhhhccCCCccceEeeccC
Confidence 469999999998888887776 899999985 345 3433 3459999999 88999888765 555667777777
Q ss_pred CCCCcEEEEE--ecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCc-EEEEecCCCceeeeeeccc
Q 017773 199 PFGSSLVAAG--CADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGC-LKLWNVNDSRVIRTYKGHV 274 (366)
Q Consensus 199 ~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~ 274 (366)
+.+ .+++.- ...|.|.+||..+. +++..+..|++++.+++|+ +|.+|+|++..|+ ||++.+.+++.+.+|+...
T Consensus 139 ~~n-~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 139 NAN-CYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred CCC-ceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 765 466542 24689999999998 7899999999999999999 9999999999997 7899999999999998777
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
..++..+++|+|++++|++.+..++|++|.++.
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 788888888889999999999999999999864
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=2e-22 Score=152.83 Aligned_cols=248 Identities=16% Similarity=0.182 Sum_probs=182.8
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
+.+|.+.|+++.|..+ .+|.+|..-|.|.+|++.+.+....+..+....|+.+.-.|+ ..+ .+-+.|+.+.+|++
T Consensus 10 LRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l-~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSL-DTQGRDPLLILWTI 84 (323)
T ss_pred eccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cch-hhcCCCceEEEEEc
Confidence 4466788999999874 569999999999999999999888888665559999999987 445 78889999999998
Q ss_pred CCCCCceeEee-----------------------cC--------------------------CCCCCCeEEEEEcCC-C-
Q 017773 173 RCDGGKCVSTV-----------------------QP--------------------------SASRSAVCCVEFHPF-G- 201 (366)
Q Consensus 173 ~~~~~~~~~~~-----------------------~~--------------------------~~~~~~i~~~~~~~~-~- 201 (366)
.....-.+..+ .. .+..+.+.|..+.-. +
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 72100000000 00 011234455553222 2
Q ss_pred CcEEEEEecCCeEEEEecCCCCC---------CeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC----cee
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVD---------PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS----RVI 267 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~----~~~ 267 (366)
..++++|-++|.+.+||+.++.+ .......|..+|.++.+. .-+.=++++.+..+..|.+... +..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 24677888999999999988622 222345689999999996 3344467788888889987643 122
Q ss_pred eeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 268 RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
.++......+..+.+. ||++.+|+++.|++|+||+.++.+++..+ ..|.+.|++++|+| +...+|++
T Consensus 245 ~e~~lknpGv~gvrIR--pD~KIlATAGWD~RiRVyswrtl~pLAVL--------kyHsagvn~vAfsp---d~~lmAaa 311 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIR--PDGKILATAGWDHRIRVYSWRTLNPLAVL--------KYHSAGVNAVAFSP---DCELMAAA 311 (323)
T ss_pred ceEEecCCCccceEEc--cCCcEEeecccCCcEEEEEeccCCchhhh--------hhhhcceeEEEeCC---CCchhhhc
Confidence 2223233356677777 99999999999999999999999998877 45899999999999 66699999
Q ss_pred CCCCcEEEEEe
Q 017773 348 GSDGLLHVFVG 358 (366)
Q Consensus 348 ~~dg~i~iw~~ 358 (366)
+.|+.|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999986
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.7e-21 Score=152.23 Aligned_cols=248 Identities=18% Similarity=0.273 Sum_probs=184.6
Q ss_pred cCCCceEEEEECCC----CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 40 AVSDSIGVIEFDPS----DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 40 ~h~~~i~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
.|.+....++|+-+ ..++|.|+.-|.|+|.|+.+.+... .+.+|...|+.+.+.|+ ..++++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------~~~ghG~sINeik~~p~-~~qlvl 152 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------NYRGHGGSINEIKFHPD-RPQLVL 152 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------ceeccCccchhhhcCCC-CCcEEE
Confidence 37888999999864 3589999999999999998866544 46677789999999998 468999
Q ss_pred EEcCCCcEEEEeCCCCceeEeee---cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC----cee--------
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERD---EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG----KCV-------- 180 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~----~~~-------- 180 (366)
+++.|..|++|++++..++..+. +|.+ .|.++.|++++.++ ++++.|.++++|++..+.. +..
T Consensus 153 s~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i-~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 153 SASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRI-ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred EecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCee-eccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999999999999999888764 5666 99999999999987 9999999999999982110 000
Q ss_pred -----------Eee-cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-------------CeeEeecccCc
Q 017773 181 -----------STV-QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-------------PVLVFDGHRKT 235 (366)
Q Consensus 181 -----------~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~~~ 235 (366)
..+ ...-|...|.|+.|- | .++++-+.++.|..|..-...+ .+..+.-....
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 000 111355566677776 3 6888888899999998722111 12233334456
Q ss_pred EEEEEEc---CCCEEEEEeCCCcEEEEecCCCcee--eeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 236 VTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVI--RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 236 v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.-+.|. -++.|+.|...|.|.+||++..++. .++..+...-+.-+.+++.|+.+|+...+|+.|.-||..
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 6677775 4678999999999999999987653 233323222233344455999999999999999999864
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=7.9e-22 Score=151.52 Aligned_cols=210 Identities=18% Similarity=0.280 Sum_probs=167.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+-+.|.|+.|.|++..+++-. |..|.+|+++.............. ..+....++-+|+|..+++.+++.+ |
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEEeC-C
Confidence 456899999999999888876 789999999876653211111111 1134568889999966688888876 8
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+++..||+.+......+...++..|..+.|+|+-++++++|+.||.|++||.+. +..++..+. +|.-.|.++.|+|.
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~-tk~pv~el~--~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK-TKFPVQELP--GHSHWVWAVRFNPE 269 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC-CCccccccC--CCceEEEEEEecCc
Confidence 999999999988887777666669999999999999999999999999999993 456677776 45559999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCC----------------------------CCCeeEeecccCcEEEEEEc--CCCEEEEE
Q 017773 201 GSSLVAAGCADKKAYAYDVRKM----------------------------VDPVLVFDGHRKTVTYIRFL--DVDTLVTA 250 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~~l~~~ 250 (366)
..+++++|+.|..|.+|....- ...+.++..|...|++++|+ +.-.|++-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 8899999999999999965321 01234677899999999998 77788999
Q ss_pred eCCCcEEEEecC
Q 017773 251 GTDGCLKLWNVN 262 (366)
Q Consensus 251 ~~d~~i~iwd~~ 262 (366)
+.||++.|=.+.
T Consensus 350 SYDGRviIs~V~ 361 (370)
T KOG1007|consen 350 SYDGRVIISSVP 361 (370)
T ss_pred ccCceEEeecCC
Confidence 999999886654
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=2.2e-19 Score=159.10 Aligned_cols=291 Identities=28% Similarity=0.457 Sum_probs=221.9
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecc-cccceeeeecCceeceeeeecCCceeEEEE-ecCCCCc-EEE
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL-VDHPVVAVVDHSKVCDYYICTPAKLSSLKW-KPGTSGR-VLG 115 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~ 115 (366)
..|...+.++.+.+.+..++.++.|+.+.+|+..... ... .+.... ...+..+.+ .++ +. .++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~--~~~~~~ 127 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLH---------DSSVSKLALSSPD--GNSILL 127 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccC---------CCceeeEEEECCC--cceEEe
Confidence 4589999999999999999999999999999988765 211 222211 124677777 666 65 555
Q ss_pred EEcC-CCcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 116 SGDY-DGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 116 ~~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
..+. |+.+.+|+... ......+..|.. .|..++|+|++..+ ++++. |+.+++|++. ....+..+. .|...+
T Consensus 128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~v 201 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSE-SVTSLAFSPDGKLL-ASGSSLDGTIKLWDLR--TGKPLSTLA--GHTDPV 201 (466)
T ss_pred ccCCCCccEEEEEecCCCeEEEEEecCcc-cEEEEEECCCCCEE-EecCCCCCceEEEEcC--CCceEEeec--cCCCce
Confidence 5444 99999999998 777788888887 89999999999866 66675 9999999998 566677666 477799
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce-eee
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV-IRT 269 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~ 269 (366)
.+++|+|++..++++++.|+.|++||.+.. .... .+..|.... ...|+ ++..+++++.|+.+++|+.+.... +..
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 999999998435555589999999998855 4555 577787775 33777 667889999999999999987764 445
Q ss_pred eecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe-C
Q 017773 270 YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG-G 348 (366)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-~ 348 (366)
+..|...+..+.+. |++..+++++.|+.+.+|+..+........ ...|...+..+.| + . ++..++.+ .
T Consensus 280 ~~~~~~~v~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~-~-~~~~~~~~~~ 348 (466)
T COG2319 280 LSGHSSSVLSVAFS--PDGKLLASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSF-S-P-DGSLLVSGGS 348 (466)
T ss_pred EecCCccEEEEEEC--CCCCEEEEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEE-C-C-CCCEEEEeec
Confidence 56677777777665 888888889889999999888777665543 1346668999999 5 1 33355555 7
Q ss_pred CCCcEEEEEecccC
Q 017773 349 SDGLLHVFVGKKKP 362 (366)
Q Consensus 349 ~dg~i~iw~~~~~~ 362 (366)
.|+.+++|+.....
T Consensus 349 ~d~~~~~~~~~~~~ 362 (466)
T COG2319 349 DDGTIRLWDLRTGK 362 (466)
T ss_pred CCCcEEeeecCCCc
Confidence 88999999987643
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3e-22 Score=167.01 Aligned_cols=259 Identities=17% Similarity=0.240 Sum_probs=192.2
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
-|.+.|++++|.|....|++++.||.+.+|+++.... .-.....+.-.+.+|.++|.|++..++ +..+++|+.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----s~~~~~epi~tfraH~gPVl~v~v~~n--~~~~ysgg~ 364 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----SAEKDVEPILTFRAHEGPVLCVVVPSN--GEHCYSGGI 364 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----ccccceeeeEEEecccCceEEEEecCC--ceEEEeecc
Confidence 3889999999999999999999999999999944111 111222334456788899999999999 999999999
Q ss_pred CCcEEEEeCCCC----------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 120 DGVVMEYDLEKK----------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 120 dg~i~iw~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
||+|+.|++... .....+.+|.+ .|+.+++++....| ++++.||++++|+.. ...+ ..+......
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~L-lscs~DgTvr~w~~~--~~~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRL-LSCSSDGTVRLWEPT--EESP-CTFGEPKEH 439 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccce-eeecCCceEEeeccC--CcCc-cccCCcccc
Confidence 999999976421 23346778888 99999999988777 999999999999987 3333 334333333
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-------ccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-------HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
+...++.+-.....+.++...-+.-.++++... ..+..+.. -...+..+.++ ...+.+++..|+.|+++|.
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 456667665543223333333333334444433 22222221 11345666676 7789999999999999999
Q ss_pred CCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEE
Q 017773 262 NDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 313 (366)
.+++++.....|...++++++. |+|.+|++++.|+.+++|.+....+...
T Consensus 519 ~~~~~l~s~~a~~~svtslai~--~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 519 KTGKILHSMVAHKDSVTSLAID--PNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cccccchheeeccceecceeec--CCCceEEeecCCceeehhhccchheeec
Confidence 9999999999999999999888 9999999999999999999876655543
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-20 Score=170.69 Aligned_cols=317 Identities=13% Similarity=0.162 Sum_probs=214.3
Q ss_pred eeecCCCceeeecCCCCccCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCce
Q 017773 22 EWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKL 100 (366)
Q Consensus 22 ~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (366)
-|++.+..++.-.+ |+..|..++.+++. .+++||+.||+|++|+......... ... ....+......+
T Consensus 1033 gW~p~G~lVAhL~E-----hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--s~r----S~ltys~~~sr~ 1101 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHE-----HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--SAR----SELTYSPEGSRV 1101 (1431)
T ss_pred CCCccceEeehhhh-----ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--eee----eeEEEeccCCce
Confidence 37777766654333 88889899988765 9999999999999999876433210 000 000111134578
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCCCC--c-----eeEeeecCCCCcee-eEEeccCCCc-eEEEecCCCcEEEee
Q 017773 101 SSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK--V-----PIFERDEHGGRRVW-SVDYSKGDPV-LGASGSDDGTMQMWD 171 (366)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~-----~~~~~~~~~~~~v~-~i~~~~~~~~-l~~~~~~dg~v~~~d 171 (366)
.++...+. ++.+|.++.||.|.+.+++.. + +......+..+.+. .-+|....+. +++.+..-+.|..||
T Consensus 1102 ~~vt~~~~--~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1102 EKVTMCGN--GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred EEEEeccC--CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence 99999998 999999999999999998762 1 12222223222333 3344444333 668888999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe-ecccCcEEEEEEc--CC--CE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF-DGHRKTVTYIRFL--DV--DT 246 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~--~~--~~ 246 (366)
++ .......++.....+.|++++.+|.+ +.++.|+..|.+.+||+|-. .++... .++..+++.+..+ .+ ..
T Consensus 1180 ~r--~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1180 TR--MRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ch--hhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCce
Confidence 99 66666666666666799999999998 79999999999999999987 444443 3456788888776 33 45
Q ss_pred EEEEe--CCCcEEEEecCCCceeeeeecc-----------------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 247 LVTAG--TDGCLKLWNVNDSRVIRTYKGH-----------------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 247 l~~~~--~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
.++++ ..+.|.+|++.++.....+... ...+......+...+.++.+|+.|..|+.||...
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 55544 4678999999998665555432 1111112222224567889999999999999754
Q ss_pred CceE-----------------------------EE-------------------EecccccccCCCCceeeEEEeeccCC
Q 017773 308 GEPV-----------------------------WV-------------------HDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 308 ~~~~-----------------------------~~-------------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
.+.. .. ....+......|..+|+++++....
T Consensus 1336 p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~- 1414 (1431)
T KOG1240|consen 1336 PEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE- 1414 (1431)
T ss_pred cccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC-
Confidence 3222 00 0000111224577889999887532
Q ss_pred CceEEEEeCCCCcEEEEE
Q 017773 340 DECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 340 ~~~~l~s~~~dg~i~iw~ 357 (366)
-.+|++++.||.|+||.
T Consensus 1415 -q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1415 -QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred -ccEEEEecCCCeeeecC
Confidence 34899999999999994
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.4e-22 Score=163.21 Aligned_cols=296 Identities=18% Similarity=0.219 Sum_probs=226.3
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
+..|.+.|..|.|+..|..|++|+.|..|.+||........ ....+|...|....|-|..+..-++++
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l------------~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL------------SFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccc------------ccccccccchhhhhccCCCCCcCceec
Confidence 33499999999999999999999999999999998765432 123356667888889887556889999
Q ss_pred cCCCcEEEEeCCCCc-e--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC-CCCC---
Q 017773 118 DYDGVVMEYDLEKKV-P--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS-ASRS--- 190 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~-~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~~~~--- 190 (366)
+.||.|++=.+.... . ...+..|.+ +|.-++.-|+.++-|.+++.|+.+.-+|++ ...+...+... .+..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr--~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLR--QDVPAEKFVCREADEKERV 282 (559)
T ss_pred cccCceeeeeeccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeec--cCCccceeeeeccCCccce
Confidence 999999998765432 2 334556666 999999999999988999999999999999 44433333222 2222
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC-----eeEee------cccCcEEEEEEc-CCCEEEEEeCCCcEEE
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP-----VLVFD------GHRKTVTYIRFL-DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i 258 (366)
...+++..|...+.+++|+.|..+++||.+...+. +..+- .....|++++++ ++.-|+++..|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 57889999988789999999999999999864221 22222 223569999999 8888888888999999
Q ss_pred EecCC--C----------ceeee-eecccceee--eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccC
Q 017773 259 WNVND--S----------RVIRT-YKGHVNNRN--FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 259 wd~~~--~----------~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
+.-.- + ..++. +++|...-+ .+-| |-|...++++|++=|.|.||+-.+++.+..++
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF-fGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-------- 433 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF-FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-------- 433 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeee-ccCccceEEecCccceEEEEecchhHHHHHhh--------
Confidence 95432 2 22233 788876533 3333 45888999999999999999999998876653
Q ss_pred CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 324 SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 324 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+....|+||.=+|.-| .||++|-|.-|+||...+
T Consensus 434 gDr~VVNCLEpHP~~P---vLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 434 GDRHVVNCLEPHPHLP---VLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cccceEeccCCCCCCc---hhhccCCccceeeecCCc
Confidence 3344899999999777 999999999999998743
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=1.5e-19 Score=154.04 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=174.7
Q ss_pred EEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE-cCCCcEEEEeCCC-Cce-
Q 017773 57 FATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG-DYDGVVMEYDLEK-KVP- 133 (366)
Q Consensus 57 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~- 133 (366)
+++...++.|++|++.+.........+. +.+....++++|+ +++|+++ ..++.|.+|+++. ++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----------~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~ 71 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----------VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALT 71 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----------cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceE
Confidence 3344668999999996422211111111 1234678899999 8888665 4578899999973 332
Q ss_pred -eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 134 -IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 134 -~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
..... ... ....++++|+++.++++...++.|.+|++.. .+..........+...+..++++|+++.++++...++
T Consensus 72 ~~~~~~-~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 72 FAAESP-LPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDK-DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred Eeeeec-CCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECC-CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCC
Confidence 22222 222 5678999999999866666689999999972 2221111111112235678899999955556666789
Q ss_pred eEEEEecCCCCCCe------eEeecccCcEEEEEEc-CCCEEEEEeC-CCcEEEEecCC--C--ceeeeeeccc----ce
Q 017773 213 KAYAYDVRKMVDPV------LVFDGHRKTVTYIRFL-DVDTLVTAGT-DGCLKLWNVND--S--RVIRTYKGHV----NN 276 (366)
Q Consensus 213 ~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~iwd~~~--~--~~~~~~~~~~----~~ 276 (366)
.|.+||+++..... ..... ......+.|+ ++++++++.. ++.|.+|++.. + +.+..+.... ..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 99999998642221 11111 2345678998 8888877765 89999999973 2 2333333211 11
Q ss_pred eeeEEEEEecCCCeEEEecC-CCeEEEEEeecCc-eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC-CCcE
Q 017773 277 RNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWGE-PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS-DGLL 353 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-dg~i 353 (366)
.....+.++|++++++++.. ++.|.+|++.... ......... . ......++++| ||++|+++.. ++.|
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~----~--~~~p~~~~~~~---dg~~l~va~~~~~~v 298 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP----T--ETQPRGFNIDH---SGKYLIAAGQKSHHI 298 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe----c--cccCCceEECC---CCCEEEEEEccCCcE
Confidence 12223455699999998854 7899999997543 221111100 1 12455789999 8888887765 8999
Q ss_pred EEEEec
Q 017773 354 HVFVGK 359 (366)
Q Consensus 354 ~iw~~~ 359 (366)
.+|+++
T Consensus 299 ~v~~~~ 304 (330)
T PRK11028 299 SVYEID 304 (330)
T ss_pred EEEEEc
Confidence 999875
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=9.5e-21 Score=165.29 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=195.1
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce--eE---ee-
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP--IF---ER- 137 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~---~~- 137 (366)
+.+.+|++....... ..+. .+.+|.++.|+|. +..+++.|..+|.|.+||+..+.. .. ..
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-----------~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~ 287 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-----------SPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE 287 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-----------cCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCccccccc
Confidence 478999998763222 2222 2357999999998 578999999999999999987654 21 22
Q ss_pred ecCCCCceeeEEeccCCCc--eEEEecCCCcEEEeeCCCCCCceeEeecC--C-------CCCCCeEEEEEcCCCCcEEE
Q 017773 138 DEHGGRRVWSVDYSKGDPV--LGASGSDDGTMQMWDPRCDGGKCVSTVQP--S-------ASRSAVCCVEFHPFGSSLVA 206 (366)
Q Consensus 138 ~~~~~~~v~~i~~~~~~~~--l~~~~~~dg~v~~~d~~~~~~~~~~~~~~--~-------~~~~~i~~~~~~~~~~~~l~ 206 (366)
..|.. +++.+.|..+-.. + ++++.||.|+.|+++.-.. +...... . .....+++++|.|.....++
T Consensus 288 ~sh~~-~v~~vvW~~~~~~~~f-~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 288 VSHSE-PVTAVVWLQNEHNTEF-FSLSSDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred ccCCc-CeEEEEEeccCCCCce-EEEecCCcEeeeecccccc-chhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 23444 8999999775443 6 8888999999999873111 1111110 0 12347899999998889999
Q ss_pred EEecCCeEEEEec---CCCC----CCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecC-CCceeeeeecccce
Q 017773 207 AGCADKKAYAYDV---RKMV----DPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVN-DSRVIRTYKGHVNN 276 (366)
Q Consensus 207 ~~~~d~~i~i~d~---~~~~----~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~ 276 (366)
+|+.+|.|+--+- +... +....+..|.++|+++.++ ..+.|++++ |.+++||... ...++..+..+...
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 9999999987333 2222 2244566788999999998 556666666 9999999988 77888888888877
Q ss_pred eeeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 277 RNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 277 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
+..++|+ | ....++++..||.|.+||+........... ..+....+.+.|++ .|+.|+.|...|.+++
T Consensus 444 v~~vaWS--ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~------~~~~~~l~~~~~s~---~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 444 VTDVAWS--PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ------KVCSPALTRVRWSP---NGKLLAVGDANGTTHI 512 (555)
T ss_pred eeeeEEc--CcCceEEEEEcCCCceehhhhhccccCCcccc------cccccccceeecCC---CCcEEEEecCCCcEEE
Confidence 8888888 5 346788889999999999975433222211 22356677888888 7889999999999999
Q ss_pred EEecc
Q 017773 356 FVGKK 360 (366)
Q Consensus 356 w~~~~ 360 (366)
|++..
T Consensus 513 ~~l~~ 517 (555)
T KOG1587|consen 513 LKLSE 517 (555)
T ss_pred EEcCc
Confidence 99964
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=6e-21 Score=152.68 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=163.3
Q ss_pred eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-----CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec
Q 017773 136 ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG-----GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 136 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 210 (366)
.+.+|.. +|..++|+|.+...+|+|+.|.+|.+|++..+. .+++..+. +|...|.-++|+|...+.|++++.
T Consensus 76 ~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~--gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY--GHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccc-cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe--ecceeEEEEeecccchhhHhhccC
Confidence 4567777 999999999999999999999999999987211 13344444 788899999999998899999999
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG 289 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
|..|.+||+.++ ..+..+. |...|+++.|+ +|.+|++.+.|..|||||.++++.+.+-.+|.+.-..-++ |-.+|.
T Consensus 153 Dn~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai-fl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI-FLASGK 229 (472)
T ss_pred CceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE-EeccCc
Confidence 999999999998 5555566 99999999999 9999999999999999999999999988888764332222 336888
Q ss_pred eEEEec---CCCeEEEEEeecCc-eEEEEecccccccCCCCceeeEEEeeccCCCceEEEE-eCCCCcEEEEEecccC
Q 017773 290 LLGCGS---ETNQVFVYDVRWGE-PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA-GGSDGLLHVFVGKKKP 362 (366)
Q Consensus 290 ~l~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~ 362 (366)
++.+|- .+.++-+||..+-+ ++...++. .+..|.---|.| |.+++.. |-.|+.||-|.+...+
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------tSnGvl~PFyD~---dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-------TSNGVLLPFYDP---DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-------cCCceEEeeecC---CCCEEEEEecCCcceEEEEecCCC
Confidence 666663 47789999987643 33333322 234455555666 5556654 4569999999987654
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=176.05 Aligned_cols=276 Identities=17% Similarity=0.264 Sum_probs=219.5
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
++|..+|+|+.|...|.+++||+.|..++||..++..+.. . ..||.+.|+.++.+.+ +.++++++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s----------~rGhs~ditdlavs~~--n~~iaaaS 251 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---S----------CRGHSGDITDLAVSSN--NTMIAAAS 251 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---c----------CCCCccccchhccchh--hhhhhhcc
Confidence 4599999999999999999999999999999988876655 3 4456678999999998 89999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec---CCCCCCCeEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ---PSASRSAVCCV 195 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~---~~~~~~~i~~~ 195 (366)
.|..|++|.+..+.++..+.+|++ .|++++|+|- .+.+.||++++||.+ ..+..... .......+.++
T Consensus 252 ~D~vIrvWrl~~~~pvsvLrghtg-avtaiafsP~-----~sss~dgt~~~wd~r---~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDGAPVSVLRGHTG-AVTAIAFSPR-----ASSSDDGTCRIWDAR---LEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred cCceEEEEecCCCchHHHHhcccc-ceeeeccCcc-----ccCCCCCceEecccc---ccccccCCCCCCcccccceeee
Confidence 999999999999999999999999 9999999994 578899999999987 22222111 01223467778
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
.|...+ .-+++|+.|+.-..|.+... ..+...+.-+..+ ...+.+++-.+-.+.+|++.++..++.+.+|
T Consensus 323 ~~~~~~-~~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh 394 (1113)
T KOG0644|consen 323 LFENNG-DRFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH 394 (1113)
T ss_pred eccccc-cccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc
Confidence 888877 78899999998888766532 1122222222222 2356677778889999999999999999999
Q ss_pred cceeeeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 274 VNNRNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 274 ~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
...+..+.+. | +.....+++.||...|||+-.|.++..+.. +| +.+..-.|++ ||..++....-|.
T Consensus 395 sd~~yvLd~H--pfn~ri~msag~dgst~iwdi~eg~pik~y~~-------gh-~kl~d~kFSq---dgts~~lsd~hgq 461 (1113)
T KOG0644|consen 395 SDEVYVLDVH--PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-------GH-GKLVDGKFSQ---DGTSIALSDDHGQ 461 (1113)
T ss_pred ccceeeeeec--CCCcHhhhhccCCCceEeeecccCCcceeeec-------cc-ceeeccccCC---CCceEecCCCCCc
Confidence 9998888887 6 555667899999999999999999887752 23 5677889999 9989998888899
Q ss_pred EEEEEec
Q 017773 353 LHVFVGK 359 (366)
Q Consensus 353 i~iw~~~ 359 (366)
++|....
T Consensus 462 l~i~g~g 468 (1113)
T KOG0644|consen 462 LYILGTG 468 (1113)
T ss_pred eEEeccC
Confidence 9888653
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2.2e-18 Score=152.63 Aligned_cols=309 Identities=23% Similarity=0.440 Sum_probs=226.2
Q ss_pred cccceeeeeecCCCc-eeeecCCCCccCCCceEEEEE-CCCCC-EEEEeec-CCeEEEEEcee-cccccceeeeecCcee
Q 017773 15 TNERARCEWDFNLRT-TVSSSSSPNAAVSDSIGVIEF-DPSDS-VFATGGI-ARKIRIYNIKS-VLVDHPVVAVVDHSKV 89 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~-~~~~~~~~~~~h~~~i~~~~~-s~~~~-~l~t~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~ 89 (366)
..+..+..|+..... ........ +...+..+.+ ++++. +++..+. |+.+.+|+... ...
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------------- 147 (466)
T COG2319 84 SSDGTIKLWDLDNGEKLIKSLEGL---HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL------------- 147 (466)
T ss_pred cCCCcEEEEEcCCCceeEEEEecc---CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-------------
Confidence 356777788877764 22222211 1246777777 88887 5555444 89999999876 211
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDY-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
...+..|...|..++|+|+ +..+++++. |+.+++|+...+..+..+..|.. .|.+++|+|+++.++++++.|+.++
T Consensus 148 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceEEEEecCCCcEE
Confidence 1134455668999999999 888888885 99999999998888888888777 9999999998885546669999999
Q ss_pred EeeCCCCCCceeE-eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 169 MWDPRCDGGKCVS-TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 169 ~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
+||.. .+.... .+. .|.... ...|+|++ ..+++++.|+.+++|+.+........+..|...+.++.|. ++..
T Consensus 225 ~wd~~--~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 225 LWDLS--TGKLLRSTLS--GHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred EEECC--CCcEEeeecC--CCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence 99887 566666 344 444443 33899998 7888999999999999997744244446788999999998 6888
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee--cccceeeeEEEEEecCCCeEEEe-cCCCeEEEEEeecCceEEEEecccccccC
Q 017773 247 LVTAGTDGCLKLWNVNDSRVIRTYK--GHVNNRNFVGLSVWRHGGLLGCG-SETNQVFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
+++++.|+.+.+||..+........ .|...+..+.+ . +++..++.+ ..|+.+.+|++..........
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 368 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-------- 368 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEEec--------
Confidence 8889999899999998887776665 77766666766 4 664555555 678999999998776222221
Q ss_pred CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 324 SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 324 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
....+..+.+.+ . ......+..++.+.+|+.....
T Consensus 369 -~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 369 -GHSNVLSVSFSP-D--GRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred -CCceEEEEEECC-C--CCEEEEecCCCceEEEecccCe
Confidence 112288888887 3 2233348899999999987643
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=9.1e-21 Score=151.67 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=162.8
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCC
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
...+|.++|..++|+|. +...+|+|+.|.+|.||++..+ +++..+.+|.. .|--++|+|....++++++.|
T Consensus 76 ~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-rVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-RVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-eEEEEeecccchhhHhhccCC
Confidence 45678899999999997 4678999999999999998754 46778889988 999999999998888999999
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc-EEEEEEc-
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT-VTYIRFL- 242 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~- 242 (366)
.+|.+|++. +++.+..+. |.+.|.++.|+.+| .++++.+.|..|++||.+++ +.+..-.+|.+. -..+.|-
T Consensus 154 n~v~iWnv~--tgeali~l~---hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 154 NTVSIWNVG--TGEALITLD---HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred ceEEEEecc--CCceeeecC---CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec
Confidence 999999999 788777775 88899999999999 89999999999999999998 677766777753 2334455
Q ss_pred CCCEEEEEe---CCCcEEEEecCCCce---eeeeecccceeeeEEEEEecCCCeEE-EecCCCeEEEEEeecCceE
Q 017773 243 DVDTLVTAG---TDGCLKLWNVNDSRV---IRTYKGHVNNRNFVGLSVWRHGGLLG-CGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 243 ~~~~l~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 311 (366)
++..+-||- .+..+.+||..+.+. +.++.... .| .+-| ++++.++++ +|-.|+.|+.|.+.+..+.
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gv-l~PF-yD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GV-LLPF-YDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccCC-ce-EEee-ecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 777444443 467899999876532 23333222 22 2222 457877776 5556999999999877654
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.3e-21 Score=163.16 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=203.3
Q ss_pred EEECCCC--CEEEEeecCCeEEEE--Eceeccccccee-------eeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 48 IEFDPSD--SVFATGGIARKIRIY--NIKSVLVDHPVV-------AVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 48 ~~~s~~~--~~l~t~~~dg~i~iw--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
+++.|.+ +..++...+...++| ++.......... .+..+....-.+..|...|..++|.|. ...|++
T Consensus 234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~s--ep~lit 311 (577)
T KOG0642|consen 234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPS--EPVLIT 311 (577)
T ss_pred ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCC--CCeEEE
Confidence 4454543 466666677777888 443321111000 011111112245677788999999998 889999
Q ss_pred EcCCCcEEEEeCCC--------CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCcee-------E
Q 017773 117 GDYDGVVMEYDLEK--------KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCV-------S 181 (366)
Q Consensus 117 ~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~-------~ 181 (366)
++.||++.+|+++. -+++.++.+|.+ +|.|+++.+++.++ ++|+.||+|+.|++. ....+- .
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~~n~~~~-ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl 388 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVPSNGEHC-YSGGIDGTIRCWNLP-PNQDPDDSYDPSVL 388 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEecCCceEE-EeeccCceeeeeccC-CCCCcccccCcchh
Confidence 99999999999932 257889999998 99999999999998 999999999999765 111111 1
Q ss_pred eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEc--CCCEEEEEeCCCcEE
Q 017773 182 TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFL--DVDTLVTAGTDGCLK 257 (366)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~--~~~~l~~~~~d~~i~ 257 (366)
.-...+|.+.+..+++++.. ..|++++.||++++|+..... + .++.. ..+.-..+.+- .-.+.++...-+.-.
T Consensus 389 ~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~ 465 (577)
T KOG0642|consen 389 SGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTS 465 (577)
T ss_pred ccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcC-c-cccCCccccCCcceEeeccchhHhhhhhccccccc
Confidence 11223888999999999986 789999999999999988763 3 22222 22333556654 223344444444444
Q ss_pred EEecCCCceeeeeeccc-------ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 258 LWNVNDSRVIRTYKGHV-------NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 258 iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
++++.....+..+.... ..+..+. .+|.+.+.+++..|+.|+++|..+++++... .+|...++
T Consensus 466 ~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV--s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--------~a~~~svt 535 (577)
T KOG0642|consen 466 IDDMEVVSDLLIFESSASPGPRRYPQINKVV--SHPTADITFTAHEDRSIRFFDNKTGKILHSM--------VAHKDSVT 535 (577)
T ss_pred chhhhhhhheeeccccCCCcccccCccceEE--ecCCCCeeEecccCCceecccccccccchhe--------eeccceec
Confidence 55555554444443211 1223333 3488999999999999999999999988765 56889999
Q ss_pred EEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 331 SVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
++++.| +|-+|++++.||.+++|.++.+
T Consensus 536 slai~~---ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 536 SLAIDP---NGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceeecC---CCceEEeecCCceeehhhccch
Confidence 999999 5559999999999999998653
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.5e-19 Score=133.86 Aligned_cols=247 Identities=16% Similarity=0.217 Sum_probs=170.3
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|.++|+.++|. ..+|++|+ ||.|+=|......+..-...+..-..+...-...-..|++|...|. .+-++.++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~--enSi~~Ag 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS--ENSILFAG 133 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC--CCcEEEec
Confidence 3499999999998 44777776 6999999877644311011111111100000111236999999998 55555566
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC--------C
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR--------S 190 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~--------~ 190 (366)
.|+.++-||+++|+...++++|++ .|.++.-......+ ++|+.||++++||++ +++.+..+....++ .
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qi-lsG~EDGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQI-LSGAEDGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCcce-eecCCCccEEEEecc--ccceeEEeccccChhhcCcccCc
Confidence 799999999999999999999999 99999986556666 899999999999999 88888887655432 3
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
.|.+++.+. ..+++| ....+.+|.++.. ++...+. -..++..+.|. .+.+++++..+.|.-|.+. |..-...
T Consensus 210 wigala~~e---dWlvCG-gGp~lslwhLrss-e~t~vfp-ipa~v~~v~F~-~d~vl~~G~g~~v~~~~l~-Gvl~a~i 281 (325)
T KOG0649|consen 210 WIGALAVNE---DWLVCG-GGPKLSLWHLRSS-ESTCVFP-IPARVHLVDFV-DDCVLIGGEGNHVQSYTLN-GVLQANI 281 (325)
T ss_pred eeEEEeccC---ceEEec-CCCceeEEeccCC-CceEEEe-cccceeEeeee-cceEEEeccccceeeeeec-cEEEEec
Confidence 456666654 466665 4567999999987 5666665 45677788885 4577888888889999864 4444444
Q ss_pred ecccceeeeEEEEEecCCCeEEEecCCCeEEEE
Q 017773 271 KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVY 303 (366)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 303 (366)
+..........+..+| -+++..++....+.|+
T Consensus 282 p~~s~~c~s~s~~~~p-~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 282 PVESTACYSASWQTSP-IKFISIAGFSNKLHIL 313 (325)
T ss_pred cCCccceeeecccCCc-eEEEEecccceeeeee
Confidence 4444344455555444 4566666666777765
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=159.56 Aligned_cols=261 Identities=15% Similarity=0.189 Sum_probs=196.2
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceecee
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
..+.+...+.|+++.+.++. +.-+|++.|+|++|+.||+.+|+|+.|..|.+|+-+-.-. .
T Consensus 28 ~lAAg~rlliyD~ndG~llq----tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---------------L 88 (1081)
T KOG1538|consen 28 ILAAGSRLLVYDTSDGTLLQ----PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---------------L 88 (1081)
T ss_pred EEecCCEEEEEeCCCccccc----ccccccceEEEEEEccCCceeccCCCceeEEEecccccce---------------e
Confidence 33445556667776666543 3445999999999999999999999999999998543211 1
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
...|...|.||.|+|- ...|++++-. ..-+|..+.... ...+. ..++.+.+|..||+++ +.|-.+|+|.+-+-
T Consensus 89 kYSH~D~IQCMsFNP~--~h~LasCsLs-dFglWS~~qK~V-~K~ks--s~R~~~CsWtnDGqyl-alG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPI--THQLASCSLS-DFGLWSPEQKSV-SKHKS--SSRIICCSWTNDGQYL-ALGMFNGTISIRNK 161 (1081)
T ss_pred eeccCCeeeEeecCch--HHHhhhcchh-hccccChhhhhH-Hhhhh--heeEEEeeecCCCcEE-EEeccCceEEeecC
Confidence 2346678999999998 8899998753 467888765432 22222 2278999999999998 99999999999865
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCC----cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGS----SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 247 (366)
. ..+....-.+.+...+|.+++|+|... ..+++.....++.+|.+... .+..-+.-.-...|+.+. +|.++
T Consensus 162 ~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 162 N--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred C--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCchhheeccCCcEE
Confidence 5 334444444556778999999999642 47788888888888887653 333222233344677777 99999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 248 VTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.|+.|+.+.+|- +.|-.+.++-.....++.++.. |++++++.|..||+|..|++-
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~--PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK--PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc--cCCceEEEEEccCeeehhhhH
Confidence 9999999999996 6677777777677788888887 999999999999999999863
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=4.5e-19 Score=140.96 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=178.2
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDG 176 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~ 176 (366)
.+..+.|+.+ ...|..|+.|| .++++.+.......... .+..|..+-|+. ..+ +..+.+ +.+++++++ .
T Consensus 7 ti~~~~~Nqd--~~~lsvGs~~G-yk~~~~~~~~k~~~~~~-~~~~IvEmLFSS--SLv-aiV~~~qpr~Lkv~~~K--k 77 (391)
T KOG2110|consen 7 TINFIGFNQD--STLLSVGSKDG-YKIFSCSPFEKCFSKDT-EGVSIVEMLFSS--SLV-AIVSIKQPRKLKVVHFK--K 77 (391)
T ss_pred ceeeeeeccc--eeEEEccCCCc-eeEEecCchHHhhcccC-CCeEEEEeeccc--cee-EEEecCCCceEEEEEcc--c
Confidence 4777789988 89999999998 57888765443222222 222566666764 333 433333 459999998 5
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEc-CCCEEEEEe-
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFL-DVDTLVTAG- 251 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~l~~~~- 251 (366)
...+-.+..+. .|.++.++.+ .|+++ -...|+|||++++ +++.++. .+...+.++..+ .+.+++.-+
T Consensus 78 ~~~ICe~~fpt---~IL~VrmNr~---RLvV~-Lee~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 78 KTTICEIFFPT---SILAVRMNRK---RLVVC-LEESIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred CceEEEEecCC---ceEEEEEccc---eEEEE-EcccEEEEecccc-eeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 66666665433 8999999863 45554 3445999999998 6766654 344557777776 666777543
Q ss_pred -CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCe-EEEEEeecCceEEEEecccccccCCCCcee
Q 017773 252 -TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ-VFVYDVRWGEPVWVHDFEPVTAAGSERGFV 329 (366)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 329 (366)
..|.|.+||..+.+++..+..|.+++.+++|+ ++|.+||++++.|+ |||+.+.+|+.++++..+. -...|
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs--~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~------~~~~I 221 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFS--PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT------YPVSI 221 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEEC--CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc------eeeEE
Confidence 56899999999999999999999999888887 99999999999986 7999999999999886432 24569
Q ss_pred eEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 330 SSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+++|+| ++++|++.++.++|+||.++...
T Consensus 222 ySL~Fs~---ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP---DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC---CCCeEEEecCCCeEEEEEecccc
Confidence 9999999 88899999999999999998744
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=1.4e-19 Score=145.33 Aligned_cols=289 Identities=16% Similarity=0.199 Sum_probs=200.0
Q ss_pred cccccceeeeeecCCCc-----eeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceeccccc---ceeeee
Q 017773 13 ETTNERARCEWDFNLRT-----TVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDH---PVVAVV 84 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~ 84 (366)
....+..+..|-.+... ........+.+|..+|+++.|+|+|++||+|+.+|.|.+|......... ......
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 34457778888653211 1222223345699999999999999999999999999999876311100 000111
Q ss_pred cCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC
Q 017773 85 DHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
..-.....+.+|...|+.++|+|+ +.++++++-|..+++||+..|.....+..|.. .|..++|.|.++++ ++-+.|
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv-~s~s~d 186 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYV-ASKSSD 186 (434)
T ss_pred cceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhhhhh-hhhccC
Confidence 112233456678899999999999 99999999999999999999999999999988 99999999999988 888888
Q ss_pred CcEEEeeCCCCCCceeEeec---------------------CCCCCCCeEEEEEcCCCCcEEEEEec---------CCeE
Q 017773 165 GTMQMWDPRCDGGKCVSTVQ---------------------PSASRSAVCCVEFHPFGSSLVAAGCA---------DKKA 214 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~l~~~~~---------d~~i 214 (366)
...+.+.+. ..+.+.... -..-......++|+|+| .++++... -+..
T Consensus 187 r~~~~~~~~--~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~t 263 (434)
T KOG1009|consen 187 RHPEGFSAK--LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTS 263 (434)
T ss_pred cccceeeee--eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeecee
Confidence 877777665 222111111 01112234567899998 67776431 2344
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEc------------------CCC-EEEEEeCCCcEEEEecCCCceeeeee-ccc
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFL------------------DVD-TLVTAGTDGCLKLWNVNDSRVIRTYK-GHV 274 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~------------------~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~ 274 (366)
++|+-....++...+.....+...+.++ .-. .++.++ ...|.+||.++..++.... .|-
T Consensus 264 Yvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy 342 (434)
T KOG1009|consen 264 YVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHY 342 (434)
T ss_pred EeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeee
Confidence 6666555545666665555544444432 112 344444 5679999999988877664 477
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
..++.++|+ ++|..|+..+.||...+..++..+.-
T Consensus 343 ~~iTDiaws--~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 343 SAITDIAWS--DDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eeecceeec--CCCcEEEEeccCCceEEEEEcchhcc
Confidence 777777777 99999999999999888887765543
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.8e-19 Score=160.94 Aligned_cols=290 Identities=15% Similarity=0.172 Sum_probs=197.8
Q ss_pred Cccccc-ccceeeeeecCCCceeeecCCCCccCCCceEEEEECC--CCCEEEEeecCCeEEEEEceecc--cccceeeee
Q 017773 10 PQAETT-NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDP--SDSVFATGGIARKIRIYNIKSVL--VDHPVVAVV 84 (366)
Q Consensus 10 ~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~ 84 (366)
+..+.+ +...+++|+.+.++.+.+...+. .....|+.+.+-. |..++++|+.||.||||+-.... .........
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGA-FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred ceeEEcCCcceEEEEecccCceeccccCCC-CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 334444 47888999999998887775443 4567799999876 34689999999999999754332 111111111
Q ss_pred cCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC
Q 017773 85 DHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
+-. ....+..+.=.-+.|... ..+|++++.-..|+|||.........+.......|+++.-+..+..++++|..|
T Consensus 1156 ~Ls---~~~~~~r~~~~v~dWqQ~--~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1156 SLS---DQLPGARGTGLVVDWQQQ--SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred ccc---ccCccCCCCCeeeehhhh--CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC
Confidence 111 111111111234567766 445555555789999999998888888777776888887766665566999999
Q ss_pred CcEEEeeCCCCCCc-eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC-CCCeeEeeccc--C-cEEEE
Q 017773 165 GTMQMWDPRCDGGK-CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM-VDPVLVFDGHR--K-TVTYI 239 (366)
Q Consensus 165 g~v~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~--~-~v~~~ 239 (366)
|.|++||.+....+ .+...+.+....+|..+.+.+.|-..+++|+.+|.|++||+|.. .........|- + ..+++
T Consensus 1231 GsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1231 GSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred CceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceee
Confidence 99999999854332 33444432233349999999988556999999999999999984 22222233332 3 48999
Q ss_pred EEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc-------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 240 RFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH-------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 240 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
..+ ....+++|+. +.|+||++. |+.+..++.+ .+.+.+++ |+|.--++|+|+.|..|.||....++
T Consensus 1311 ~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~--FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLA--FHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceee--ecchhHhhhhccCCceEEEeecCCcC
Confidence 999 7788888888 999999975 4444444322 22334444 55988999999999999999876543
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=3e-20 Score=141.09 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=177.7
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|+++.|..+++ |.+|..-|.|.+|++.+..... .+..+ +...|+.+.-.| +..|.+-+.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~---------g~~~it~lq~~p---~d~l~tqgR 75 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLF---------GRLFITNLQSIP---NDSLDTQGR 75 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhh---------ccceeeceeecC---CcchhhcCC
Confidence 4899999999988775 8899999999999999865443 22212 224578888777 467888888
Q ss_pred CCcEEEEeCCCCceeE--------------ee-----------ec---------------------------CCCCceee
Q 017773 120 DGVVMEYDLEKKVPIF--------------ER-----------DE---------------------------HGGRRVWS 147 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~--------------~~-----------~~---------------------------~~~~~v~~ 147 (366)
|+.+.+|++..+..+. .+ .. ...+.+.+
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9999999876522111 00 00 00013444
Q ss_pred EEecc--CCCceEEEecCCCcEEEeeCCCCCCceeEee--------cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEE
Q 017773 148 VDYSK--GDPVLGASGSDDGTMQMWDPRCDGGKCVSTV--------QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 148 i~~~~--~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 217 (366)
..+.. ....++++|.++|.+.+||+. .+..+..+ ....|..++.++.+.+.- ..=++|+.+..+..|
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S--~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLS--TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMY 232 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEcc--CCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceee
Confidence 44322 234456888899999999999 44222222 122578899999998865 455778888889999
Q ss_pred ecCCCCC--Ce-eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEE
Q 017773 218 DVRKMVD--PV-LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 218 d~~~~~~--~~-~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
+++.... ++ ......+-.+..+..- |++.+++++-|++||+|..++.+++..++-|...+++++|+ |+..++|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs--pd~~lmAa 310 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS--PDCELMAA 310 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC--CCCchhhh
Confidence 8864311 11 1222233457778887 99999999999999999999999999999999998888887 99999999
Q ss_pred ecCCCeEEEEEe
Q 017773 294 GSETNQVFVYDV 305 (366)
Q Consensus 294 ~~~dg~i~iwd~ 305 (366)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=6.5e-18 Score=131.93 Aligned_cols=242 Identities=14% Similarity=0.206 Sum_probs=171.6
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC--
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-- 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-- 120 (366)
....+++|+.|...+++|..+| .+||+.+.-++........+ .-.+..|-|-. +-+.++|+.+
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-----------G~~~veMLfR~---N~laLVGGg~~p 70 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-----------GFKIVEMLFRS---NYLALVGGGSRP 70 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-----------chhhhhHhhhh---ceEEEecCCCCC
Confidence 3456699999999999998766 99999886333221110000 01244444443 2223334332
Q ss_pred ----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 121 ----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 121 ----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
..|.|||=...+++.++.... +|.++.+.++ .+ ++. ..+.|++|.... ..+.++.+.....+..+.+++
T Consensus 71 ky~pNkviIWDD~k~~~i~el~f~~--~I~~V~l~r~--ri-Vvv-l~~~I~VytF~~-n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELSFNS--EIKAVKLRRD--RI-VVV-LENKIYVYTFPD-NPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred CCCCceEEEEecccCcEEEEEEecc--ceeeEEEcCC--eE-EEE-ecCeEEEEEcCC-ChhheeeeecccCCCceEeec
Confidence 579999977777888877665 8999999864 23 333 467899999873 345566665555455666655
Q ss_pred EcCCCCcEEEE-EecCCeEEEEecCCCCC-CeeEeecccCcEEEEEEc-CCCEEEEEeCCCc-EEEEecCCCceeeeeec
Q 017773 197 FHPFGSSLVAA-GCADKKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGC-LKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 197 ~~~~~~~~l~~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~ 272 (366)
-..+. .+||. |..-|.|+|-|+..... +...+.+|...|.+++.+ +|..+||++..|+ |||||..+++++.+++.
T Consensus 144 ~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 144 PTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 55443 34444 55679999999987632 357788999999999999 9999999999997 79999999999999986
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
........+++|+|+..+|+++|+.|+|+|+.++.
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 44443444444559999999999999999999875
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=8.2e-19 Score=136.96 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=163.4
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.++|+|.+|++|+..+|++.....|.||.....+.-....++.. |...|+.+.|+|. .+.|++++.|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~----------Hd~~vtgvdWap~--snrIvtcs~dr 77 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE----------HDKIVTGVDWAPK--SNRIVTCSHDR 77 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh----------hCcceeEEeecCC--CCceeEccCCC
Confidence 67899999999999999999999999999877654443334444 4568999999999 99999999999
Q ss_pred cEEEEeCC-CC--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 122 VVMEYDLE-KK--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 122 ~i~iw~~~-~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.-++|... .+ ++...+..++. .++++.|+|.++.+ ++|+....|.+|-++.+..--+...........|.++.|+
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNr-AAt~V~WsP~enkF-AVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINR-AATCVKWSPKENKF-AVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred CccccccCCCCeeccceeEEEecc-ceeeEeecCcCceE-EeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 99999984 33 45666666776 89999999988877 9999999999998873322222222222455689999999
Q ss_pred CCCCcEEEEEecCCeEEEEecC-----CC------------CCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEe
Q 017773 199 PFGSSLVAAGCADKKAYAYDVR-----KM------------VDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~-----~~------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd 260 (366)
|++ -++++|+.|+.+++|..- .. ++.+..+....+.+..+.|+ +|..|+-.+.|..+.+-|
T Consensus 156 pnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 997 899999999999998642 11 01122333456789999999 999999999999999999
Q ss_pred cCCCc
Q 017773 261 VNDSR 265 (366)
Q Consensus 261 ~~~~~ 265 (366)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 87664
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=141.69 Aligned_cols=274 Identities=14% Similarity=0.143 Sum_probs=185.7
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECC--CCCEEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDP--SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
.....+..+..|++.++..+.... +|+..++.+.|.. ....+.+|+.||+|++||++......... ...+.
T Consensus 44 av~lSngsv~lyd~~tg~~l~~fk----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-~~~~~-- 116 (376)
T KOG1188|consen 44 AVSLSNGSVRLYDKGTGQLLEEFK----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-WTQQS-- 116 (376)
T ss_pred EEEecCCeEEEEeccchhhhheec----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-ccCCC--
Confidence 344456666777777766554443 3688888888877 45789999999999999998865543221 12221
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEc----CCCcEEEEeCCCCce-eEeee-cCCCCceeeEEeccCCCceEEEecC
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGD----YDGVVMEYDLEKKVP-IFERD-EHGGRRVWSVDYSKGDPVLGASGSD 163 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~-~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~~ 163 (366)
+.+..+++-+-. ++.+++|. .+-.|.+||+...+. +..+. .|.+ .|+++.|+|..+.++++|+.
T Consensus 117 -------~~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 117 -------GTPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred -------CCcceEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecc
Confidence 245677777666 77888875 367899999988765 55554 4555 99999999999999999999
Q ss_pred CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc-----------
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH----------- 232 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------- 232 (366)
||-|.+||++.+ .+.-..+....+...|.++.|..++-+.|.+-+..+...+|+++.+. ....+...
T Consensus 187 DGLvnlfD~~~d-~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~ 264 (376)
T KOG1188|consen 187 DGLVNLFDTKKD-NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKED 264 (376)
T ss_pred cceEEeeecCCC-cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhh
Confidence 999999999843 11111122224556899999998876678888899999999998763 32222211
Q ss_pred -cC-cEEEEEEcCCCEEEEEeC-CCcEEEEecC---C---Cceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEE
Q 017773 233 -RK-TVTYIRFLDVDTLVTAGT-DGCLKLWNVN---D---SRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFV 302 (366)
Q Consensus 233 -~~-~v~~~~~~~~~~l~~~~~-d~~i~iwd~~---~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 302 (366)
.. -|.+..-.+...++.++. -+...++-+. + .+.+..+.+ |..-|+.+.|. ..+.++.+|++||.+.+
T Consensus 265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~--~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD--VKNDVLYTGGEDGLLQA 342 (376)
T ss_pred hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh--cccceeeccCCCceEEE
Confidence 01 122211114555655554 5555555443 2 245556666 55555555555 78899999999999999
Q ss_pred EEee
Q 017773 303 YDVR 306 (366)
Q Consensus 303 wd~~ 306 (366)
|..+
T Consensus 343 Wk~~ 346 (376)
T KOG1188|consen 343 WKVE 346 (376)
T ss_pred EecC
Confidence 9853
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=149.23 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=191.6
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEE-EceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIY-NIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.|...+.|+.|+.+...+.+++ |..+.+| ++.+..... ......... ...| +....-......+.|+.++
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~-~~~p~df~p----t~~h---~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEV-AKLPDDFVP----TDMH---LGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhh-hhCCcccCC----cccc---ccccccCCCCCcceEEEEc
Confidence 4788899999999887777765 5555555 544322211 000000000 0001 0001111111246788888
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.||.+.+.+- .++....+..|.+ .+.+-.|+|+|.-| ++++.||.|++|.-. +....++.. ...+|.|++|.
T Consensus 83 ~DGkf~il~k-~~rVE~sv~AH~~-A~~~gRW~~dGtgL-lt~GEDG~iKiWSrs---GMLRStl~Q--~~~~v~c~~W~ 154 (737)
T KOG1524|consen 83 NDGRFVILNK-SARVERSISAHAA-AISSGRWSPDGAGL-LTAGEDGVIKIWSRS---GMLRSTVVQ--NEESIRCARWA 154 (737)
T ss_pred CCceEEEecc-cchhhhhhhhhhh-hhhhcccCCCCcee-eeecCCceEEEEecc---chHHHHHhh--cCceeEEEEEC
Confidence 9999998874 4666777888887 99999999999998 999999999999865 555555442 34499999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
|+.++.+++. .+.+.|=.+... ..+...+.|.+-|.++.|+ ..+.+++|+.|-..++||. .|..+..-..|..++
T Consensus 155 p~S~~vl~c~--g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 155 PNSNSIVFCQ--GGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred CCCCceEEec--CCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence 9986666664 466777666655 4566778999999999999 8899999999999999995 567777778898899
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
+.++|. |+ ..++.++. +++++ + ....+.|..++|+| ||..++.|+..|.+.+
T Consensus 231 TSva~n--pd-~~~~v~S~-nt~R~------------~-------~p~~GSifnlsWS~---DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFN--PE-KDYLLWSY-NTARF------------S-------SPRVGSIFNLSWSA---DGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeec--cc-cceeeeee-eeeee------------c-------CCCccceEEEEEcC---CCceeeccccCceEEE
Confidence 988888 88 66666654 34441 1 22467899999999 9999999999998754
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.5e-19 Score=142.15 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=191.9
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC------CceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK------KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
-+.+|.+.|+++.|+.+ +++|++|+.|..+++|+++. .+++.....|+...|.|++|...+..+ ++|..++
T Consensus 51 D~~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~-~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL-YSGERWG 127 (609)
T ss_pred hhhhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE-ecCCCcc
Confidence 36688999999999999 99999999999999999863 466666666665699999999877766 9999999
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--cccCcEEEEEEc-
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--GHRKTVTYIRFL- 242 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~- 242 (366)
+|.+.|++ +.+.+..+......+.|..+..+|.. +.+++.+.++.|.+||.+....+...+- ........+.|+
T Consensus 128 ~VI~HDiE--t~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 128 TVIKHDIE--TKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eeEeeecc--cceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999 77777777655666799999999996 8999999999999999998744443332 233456777887
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCc-eeeeeecc----cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 243 -DVDTLVTAGTDGCLKLWNVNDSR-VIRTYKGH----VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 243 -~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
...+|++.+..+-+.+||.+... ++....+. ......+...|+|+|..+.+--....-.+||+.+..+ ..+++
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~-~V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC-FVLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc-eeEec
Confidence 67789999999999999998753 33222211 1122234455669999988876666667788876433 23333
Q ss_pred ccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 317 EPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.+...-.-....+.+++|.- ...+++|+.+-.|++|.+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~----D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFID----DYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cCCCCcceeeeeeeeeeeec----ceeeeccCcccceEEEecCC
Confidence 32111111234678888874 45699999999999999865
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=5.8e-18 Score=132.18 Aligned_cols=238 Identities=14% Similarity=0.224 Sum_probs=174.6
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCC-CceeeEEeccCCCceEEEecCC------CcEEEee
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGG-RRVWSVDYSKGDPVLGASGSDD------GTMQMWD 171 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~~d------g~v~~~d 171 (366)
...+++|+.| ...++.|..+| .++|+.+--+.....+.+.+ -.+..+-| ..+++.++|+.+ ..|.|||
T Consensus 7 ~~lsvs~NQD--~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQD--HSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccC--CceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 3566999998 88888888776 89999875333222222222 12333333 245565666554 4799999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc--CcEEEEEEc-CCCEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFL-DVDTLV 248 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~ 248 (366)
=. ..+++.++.... +|.++.+.++ .++++ .++.|++|......+.+..+.... ..+.+++-. +..+|+
T Consensus 82 D~--k~~~i~el~f~~---~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 82 DL--KERCIIELSFNS---EIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred cc--cCcEEEEEEecc---ceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 55 677888887544 9999999985 34444 678999999986546666654332 334444444 445555
Q ss_pred E-EeCCCcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCCCe-EEEEEeecCceEEEEecccccccCC
Q 017773 249 T-AGTDGCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ-VFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 249 ~-~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
. |-.-|.|+|-|+...+. ...+.+|...|.++++. .+|.++|++|..|+ |+|||..+|+++.++..+.
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln--~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------ 224 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN--LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------ 224 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc--CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------
Confidence 4 34568999999987655 57889999999999988 99999999999986 8999999999999886432
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
....|.+|+|+| ++.+||++++.|+|+||.++..
T Consensus 225 d~A~iy~iaFSp---~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 225 DRADIYCIAFSP---NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred chheEEEEEeCC---CccEEEEEcCCCeEEEEEeecC
Confidence 457899999999 8889999999999999998763
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=6.9e-17 Score=137.75 Aligned_cols=269 Identities=14% Similarity=0.182 Sum_probs=167.6
Q ss_pred cccceeeeeecCC-CceeeecCCCCccCCCceEEEEECCCCCEEEEee-cCCeEEEEEceecccccceeeeecCceecee
Q 017773 15 TNERARCEWDFNL-RTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG-IARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 15 ~~~~~~~~w~~~~-~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
..+..+..|+.+. +.+.... ...+.+....++++|++++|++++ .++.|.+|+++...... ......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~---~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~---~~~~~~----- 77 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQ---VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT---FAAESP----- 77 (330)
T ss_pred CCCCCEEEEEECCCCceeeee---EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE---Eeeeec-----
Confidence 4456677888753 3321111 111345677899999999887664 47889999986311111 000000
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCc----eeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEKKV----PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
..+....++|+|+ +++|++++ .++.|.+|++++.. .+..+... . ...+++++|++++++++...++.|
T Consensus 78 ---~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 78 ---LPGSPTHISTDHQ--GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-E-GCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred ---CCCCceEEEECCC--CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-C-cccEeEeCCCCCEEEEeeCCCCEE
Confidence 1123568999999 88888776 47899999997432 22222222 2 567889999999997777788999
Q ss_pred EEeeCCCCCCceeE----eecCCCCCCCeEEEEEcCCCCcEEEEEec-CCeEEEEecCCCC-C--CeeEeecc------c
Q 017773 168 QMWDPRCDGGKCVS----TVQPSASRSAVCCVEFHPFGSSLVAAGCA-DKKAYAYDVRKMV-D--PVLVFDGH------R 233 (366)
Q Consensus 168 ~~~d~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~--~~~~~~~~------~ 233 (366)
.+||+.. .+.... ..... .......++|+|+| ++++++.. ++.|.+||++... + .+..+..+ .
T Consensus 151 ~v~d~~~-~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 151 RLFTLSD-DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEECC-CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 9999982 222211 11111 12356789999998 56655554 8999999997421 1 12222211 1
Q ss_pred CcEEEEEEc-CCCEEEEEe-CCCcEEEEecCCCceeeeeeccc---ceeeeEEEEEecCCCeEEEecC-CCeEEEEEee
Q 017773 234 KTVTYIRFL-DVDTLVTAG-TDGCLKLWNVNDSRVIRTYKGHV---NNRNFVGLSVWRHGGLLGCGSE-TNQVFVYDVR 306 (366)
Q Consensus 234 ~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 306 (366)
.....+.++ ++++++++. .++.|.+|++.......++..+. .....+ .++|+|++|+++.. ++.|.+|+++
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~--~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF--NIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce--EECCCCCEEEEEEccCCcEEEEEEc
Confidence 123357788 888888875 47899999986543222222221 122334 45599999997765 8899999885
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5.3e-19 Score=150.02 Aligned_cols=260 Identities=19% Similarity=0.256 Sum_probs=181.9
Q ss_pred CCCEEEE--eecCCeEEEEEceeccccc--ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 017773 53 SDSVFAT--GGIARKIRIYNIKSVLVDH--PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDL 128 (366)
Q Consensus 53 ~~~~l~t--~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 128 (366)
+...+|+ ++..|.|-||++...-.+. ....+.. ...|+.+.|.|- +...|++++.||.|++|.+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N-----------gt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN-----------GTLVTDLHWDPF-DDERLAVATDDGQINLWRL 657 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCccccccccc-----------CceeeecccCCC-ChHHeeecccCceEEEEEe
Confidence 3344443 3557899999997643322 0111111 245999999997 4789999999999999998
Q ss_pred CCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 129 EKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 129 ~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
..+ .+...+..|.. .|+++.|+|-...++++++.|-+|++||+. ..+....+. +|.+.|..++|+|+|
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~e-KI~slRfHPLAadvLa~asyd~Ti~lWDl~--~~~~~~~l~--gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGE-KITSLRFHPLAADVLAVASYDSTIELWDLA--NAKLYSRLV--GHTDQIFGIAWSPDG 732 (1012)
T ss_pred ccCCCCcccCCcceeeecccc-eEEEEEecchhhhHhhhhhccceeeeeehh--hhhhhheec--cCcCceeEEEECCCC
Confidence 754 45566778887 999999999877777999999999999999 666666665 899999999999999
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeeccc-CcEEEEEEc-CCCEEEEEeCCC----cEEEEecCCC--ceeeeeecc
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-KTVTYIRFL-DVDTLVTAGTDG----CLKLWNVNDS--RVIRTYKGH 273 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~--~~~~~~~~~ 273 (366)
+.+++.+.||+|++|+.++..++++.-.+.. ..-..+.|. ++.+++..+.|. .|.+||..+- .++.+..-.
T Consensus 733 -r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 733 -RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred -cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 8999999999999999999877766544432 223456676 999988887665 5888887653 344433222
Q ss_pred cceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 274 VNNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
..+-..+ -.+.+|. -++++|-.|..|.+|.+-...+.. +.+.+.....+|. .++|.+
T Consensus 812 vaps~Lv-P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~-lpl~~f~sp~~hq----Gl~fl~ 869 (1012)
T KOG1445|consen 812 VAPSPLV-PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL-LPLAPFMSPVGHQ----GLAFLQ 869 (1012)
T ss_pred ccCcccc-ccccCCCceEEEecCCCceEEEEEecCCCcee-eecccccCCCccc----ceeeec
Confidence 2221111 1233454 456788889999999987665542 3334333334443 355555
No 201
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=9.5e-17 Score=136.58 Aligned_cols=312 Identities=14% Similarity=0.092 Sum_probs=195.9
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
..+...+...+..+.+++.....+ .+.-..+.|+|||+++++++.||.|.++|+.+.+... .....
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---~i~~G------- 77 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---TIKVG------- 77 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---EEE-S-------
T ss_pred ecCCCEEEEEECCCCeEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---EEecC-------
Confidence 345666677788877776655432 2334557899999999999999999999999877544 22222
Q ss_pred eecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCceeEeeecC------CCCceeeEEeccCCCceEEEecCCCc
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEKKVPIFERDEH------GGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
....+++++++ |++++++. .++.+.++|.++.+++..+... ...++..+..+|..+.++++--+.+.
T Consensus 78 ----~~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 78 ----GNPRGIAVSPD--GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp ----SEEEEEEE--T--TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred ----CCcceEEEcCC--CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 23678999999 99888775 5899999999999988877543 12367788888888877566666688
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee----cccCcEEEEE--
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD----GHRKTVTYIR-- 240 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~-- 240 (366)
|.+.|...........+.. ........|+|+++.++++...++.|.++|.++. +.+..+. .|..+...+-
T Consensus 152 I~vVdy~d~~~~~~~~i~~---g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKV---GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp EEEEETTTSSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEET
T ss_pred EEEEEeccccccceeeecc---cccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCC
Confidence 8888987322222233332 2378889999999555666677889999998876 3443332 2444444332
Q ss_pred -----Ec---CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe----cCCCeEEEEEeecC
Q 017773 241 -----FL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG----SETNQVFVYDVRWG 308 (366)
Q Consensus 241 -----~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~ 308 (366)
|. .+...++.-....+.+||..+.+.++++.....+ ..+..+ |+++++.+. ...+.|.++|.++.
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th--P~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH--PDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE----TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC--CCCccEEeeccCCCCCceEEEEECcCc
Confidence 32 2233323333345668999999999999976665 455555 999999987 45689999999998
Q ss_pred ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC--CCCcEEEEEecccC
Q 017773 309 EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG--SDGLLHVFVGKKKP 362 (366)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~ 362 (366)
+....+...+ ...+..+.|++ ||+.+..+. .++.|.+||.++.+
T Consensus 305 ~~~~~i~~~~-------~~~~~h~ef~~---dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 305 KVVKTITPGP-------GKRVVHMEFNP---DGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEE-HHHHH-------T--EEEEEE-T---TSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceeEEEeccC-------CCcEeccEECC---CCCEEEEEEecCCCEEEEEECCCcE
Confidence 7766553221 23489999999 776655443 34479999988754
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=147.93 Aligned_cols=271 Identities=15% Similarity=0.215 Sum_probs=202.9
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.-.-+.+.++.+|++|+.|+..|.|-.+|..+......+ .- ...|.++.|..+ .+++|++- ..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~v-----------~Etv~Dv~~LHn--eq~~AVAQ-K~ 191 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---NV-----------METVRDVTFLHN--EQFFAVAQ-KK 191 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---eh-----------hhhhhhhhhhcc--hHHHHhhh-hc
Confidence 444678999999999999999999999999887654311 11 135899999987 77777765 56
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.+.|||- .|..+..++.+. +|..+.|.|. .+|+++++..|.++.-|+. .++.+..+... .+.+..++-+|-.
T Consensus 192 y~yvYD~-~GtElHClk~~~--~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS--~GklVa~~~t~--~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 192 YVYVYDN-NGTELHCLKRHI--RVARLEFLPY-HFLLVAASEAGFLKYQDVS--TGKLVASIRTG--AGRTDVMKQNPYN 263 (545)
T ss_pred eEEEecC-CCcEEeehhhcC--chhhhcccch-hheeeecccCCceEEEeec--hhhhhHHHHcc--CCccchhhcCCcc
Confidence 7999995 466677777776 7999999995 5566999999999999999 88888888743 4488889999987
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
.++-.|...|+|.+|..... .++..+..|.++|.++++. +|.+++|++.|..++|||++....+.++.. ..+...+
T Consensus 264 -aVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 264 -AVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred -ceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc
Confidence 78999999999999999887 6888888899999999999 999999999999999999999887777665 2244455
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEe-ecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDV-RWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
+++ . -.+||.+ ....|.||.= -.+.......+ ......++|..+.|.|.. ..|-.|-.-|
T Consensus 341 s~S--q-kglLA~~-~G~~v~iw~d~~~~s~~~~~pY----m~H~~~~~V~~l~FcP~E---DvLGIGH~~G 401 (545)
T KOG1272|consen 341 SLS--Q-KGLLALS-YGDHVQIWKDALKGSGHGETPY----MNHRCGGPVEDLRFCPYE---DVLGIGHAGG 401 (545)
T ss_pred ccc--c-ccceeee-cCCeeeeehhhhcCCCCCCcch----hhhccCcccccceeccHH---HeeeccccCC
Confidence 665 3 3344444 4457999952 22221110000 001124589999999943 3555444444
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=7.5e-18 Score=148.00 Aligned_cols=237 Identities=16% Similarity=0.150 Sum_probs=156.8
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCceeEeeec
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD---GVVMEYDLEKKVPIFERDE 139 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~ 139 (366)
+..|.+||.+.... . .+ ..|...+.+..|+|+ |+.|+..+.+ ..|.+||+.+++..... .
T Consensus 183 ~~~i~i~d~dg~~~-~---~l----------t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~ 245 (429)
T PRK01742 183 PYEVRVADYDGFNQ-F---IV----------NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARKVVA-S 245 (429)
T ss_pred eEEEEEECCCCCCc-e---Ee----------ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceEEEe-c
Confidence 46899998765432 1 12 223356899999999 9988887643 46999999887543221 1
Q ss_pred CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEec
Q 017773 140 HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 140 ~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 219 (366)
..+ ....++|+|+|+.++++.+.+|.+.||.+....+. ...+. .+...+....|+|+|..+++++..++...+|++
T Consensus 246 ~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 246 FRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 112 34478999999998566667887666543321443 33343 344467889999999555556667788888887
Q ss_pred CCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 220 RKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 220 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
+........+ .+.. ....|+ +++.++..+.++ +.+||+.+++........ ...... |+|+|++|+.++.++
T Consensus 322 ~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~--~sPdG~~i~~~s~~g 393 (429)
T PRK01742 322 SASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPS--ISPNGIMIIYSSTQG 393 (429)
T ss_pred ECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCce--ECCCCCEEEEEEcCC
Confidence 6542333333 3333 457788 889988887765 566999888654322222 122334 459999999999999
Q ss_pred eEEEEEee--cCceEEEEecccccccCCCCceeeEEEeec
Q 017773 299 QVFVYDVR--WGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 299 ~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
.+.+|++. +|+....+ ..|.+.+...+|+|
T Consensus 394 ~~~~l~~~~~~G~~~~~l--------~~~~g~~~~p~wsp 425 (429)
T PRK01742 394 LGKVLQLVSADGRFKARL--------PGSDGQVKFPAWSP 425 (429)
T ss_pred CceEEEEEECCCCceEEc--------cCCCCCCCCcccCC
Confidence 89888874 46655544 44677889999998
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-16 Score=138.90 Aligned_cols=249 Identities=14% Similarity=0.187 Sum_probs=176.0
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC--C--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK--K--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
|.-.+++.+++|+ ++++|+|..||.|.+|.--. + .....+.-|.. +|.+++|+++|.+| ++|+..|.+.+|.
T Consensus 204 Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~L-lSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 204 HTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYL-LSGGREGVLVLWQ 279 (792)
T ss_pred hcccceeEEeccc--cceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceE-eecccceEEEEEe
Confidence 5566889999999 99999999999999996433 2 33456677887 99999999999998 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-----------ccCcEEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-----------HRKTVTYIR 240 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~ 240 (366)
+. +++ .+-+. .-.++|..+.++|++ .+.+....|+.|.+....+. .....+.+ ..+-.+.++
T Consensus 280 ~~--T~~-kqfLP--RLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 280 LE--TGK-KQFLP--RLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred ec--CCC-ccccc--ccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccch-hhhhhccCccCCCccccccccccceeEE
Confidence 99 444 22222 223499999999998 67778889999999887544 22222211 233456666
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCCceeeeeec-----cc----ceeeeEEEEEecCCCeEEEec--------CC--CeE
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-----HV----NNRNFVGLSVWRHGGLLGCGS--------ET--NQV 300 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~l~~~~--------~d--g~i 300 (366)
++ ..+.++-.+..|.|.+||+.+.+.+..+.. +. ..+...+...+..|.+++|.- .| -.+
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 76 467788889999999999998877666542 11 123333444446799998873 22 368
Q ss_pred EEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 301 FVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++|-......-+.+.. .....|...+...++.+.. .....++++.||.++||-+.
T Consensus 433 KFW~~n~~~kt~~L~T---~I~~PH~~~~vat~~~~~~-rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNT---KINNPHGNAFVATIFLNPT-RSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred EEEEEcCCcceeEEEE---EEecCCCceeEEEEEecCc-ccceeEEeccCCeEEEEEEe
Confidence 8998876554443321 1124477766666666533 22288999999999999884
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=2.4e-17 Score=137.40 Aligned_cols=238 Identities=21% Similarity=0.255 Sum_probs=166.9
Q ss_pred CcEEEEEcCCCcEEEEeCCCCc----eeEeeecCCCCceeeEEe-----ccCCCceEEEecCCCcEEEeeCCCCCCceeE
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKV----PIFERDEHGGRRVWSVDY-----SKGDPVLGASGSDDGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~-----~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~ 181 (366)
|++|+-.- ...+.+|+...+. ++........ ...|-+| .+.+-.+ +.|-.-|.+++.|.. ..+..+
T Consensus 135 gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dl-lIGf~tGqvq~idp~--~~~~sk 209 (636)
T KOG2394|consen 135 GDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDL-LIGFTTGQVQLIDPI--NFEVSK 209 (636)
T ss_pred CCEEEEec-CCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcce-EEeeccCceEEecch--hhHHHH
Confidence 66666544 3457888876432 1111111111 2233334 2334455 778888999999987 322222
Q ss_pred eecC--CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC---------------------------CCCeeEeecc
Q 017773 182 TVQP--SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM---------------------------VDPVLVFDGH 232 (366)
Q Consensus 182 ~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------------------~~~~~~~~~~ 232 (366)
.+.. .-.+..++|+.|-|.+...++++..+|.+++||.... ..++..+.--
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~ 289 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG 289 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec
Confidence 2211 1234689999999988889999999999999976421 0122222233
Q ss_pred cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 233 RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 233 ~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
++.|+..+|+ ++++|++.+.||.+||||..+.+++..++..-+...+++|+ |||+++++|++|..|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS--PDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS--PDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc--CCccEEEecCCcceEEEEEeccceEE
Confidence 4678889999 99999999999999999999998887777665665566655 99999999999999999999988777
Q ss_pred EEEecccccccCCCCceeeEEEeeccC--------------------------------C-------------CceEEEE
Q 017773 312 WVHDFEPVTAAGSERGFVSSVCWRRVG--------------------------------E-------------DECTLVA 346 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------~-------------~~~~l~s 346 (366)
..- .+|+.+|..++|.|.. - ....|.+
T Consensus 368 ARG--------qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGS 439 (636)
T KOG2394|consen 368 ARG--------QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGS 439 (636)
T ss_pred Eec--------cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeec
Confidence 554 6899999999998421 0 1135788
Q ss_pred eCCCCcEEEEEecccCC
Q 017773 347 GGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 347 ~~~dg~i~iw~~~~~~l 363 (366)
.+.|-.+.+||+....|
T Consensus 440 VGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 440 VGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccccceEEEEecchhhc
Confidence 99999999999976443
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.2e-18 Score=139.43 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=150.5
Q ss_pred EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEE
Q 017773 46 GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVME 125 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 125 (366)
.+++|+++|..|++|+.||++|||+..+..... ....|.+.|.++.|+|+ |+.|++-+.| ..+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------------~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------------EEIAHHAEVKDLDFSPD--GKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------------hhHhhcCccccceeCCC--CcEEEEecCC-ceEE
Confidence 789999999999999999999999976644332 12334568999999999 9999999999 8999
Q ss_pred EeCCCCceeEeee-cCCCCceeeEEeccCC---Cce-EEEecCCCcEEEeeCCCCCC-ceeEeecCCCCCCCeEEEEEcC
Q 017773 126 YDLEKKVPIFERD-EHGGRRVWSVDYSKGD---PVL-GASGSDDGTMQMWDPRCDGG-KCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 126 w~~~~~~~~~~~~-~~~~~~v~~i~~~~~~---~~l-~~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|+.+++..+.... ...+.....+.|+.++ ..+ ++.-..-+.|..||+..-.+ ...+..+.......|.+++.++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 9999997666554 2223356667777665 333 23334456677777653222 1111111112334899999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
+| ++++.|+.||.|.|++..+........+.|...|+.+.|+ +.+++++.+.|.+..+..+.-
T Consensus 292 dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 DG-KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CC-cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99 8999999999999999998855555667899999999999 888999999898888876643
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.7e-18 Score=142.55 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=159.0
Q ss_pred CCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE
Q 017773 35 SSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 35 ~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 114 (366)
+..+.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+... ..-.+|.+.|.++.|-|..+.+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------------sI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------------SISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------------eeecccccceeEEeeeccCCCeEE
Confidence 34566799999999999999999999999999999987543322 123467789999999998667899
Q ss_pred EEEcCCCcEEEEeCCCC----------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee-
Q 017773 115 GSGDYDGVVMEYDLEKK----------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV- 183 (366)
Q Consensus 115 ~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~- 183 (366)
++|..|..|+++|+... .....+..|.. .|..++-.|+++..+.+++.||+++-+|++.+. .+....
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~~ 188 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDED 188 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCc-cCCcccc
Confidence 99999999999999842 33445566776 899999999998888999999999999999311 111111
Q ss_pred ------cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC-----------------eeEe-eccc------
Q 017773 184 ------QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP-----------------VLVF-DGHR------ 233 (366)
Q Consensus 184 ------~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------------~~~~-~~~~------ 233 (366)
......-...|+..+|..+.+|++|+.|-..++||.|...+. +.-+ .+|-
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccc
Confidence 111122357799999999899999999999999996532111 1111 1121
Q ss_pred --C---cEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 234 --K---TVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 234 --~---~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
. .++-+.|+ +|..|+..-....|+++|+..+
T Consensus 269 ~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 269 LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 1 24556677 7777776666678999998754
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.3e-18 Score=136.12 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=155.8
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCcee
Q 017773 101 SSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCV 180 (366)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~ 180 (366)
.+++|+++ |..|++|+.||++|+|+..+...+.....|+. .|.++.|+|+++.| ++-+.| ..++|+.+ ++..+
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS~dgk~l-asig~d-~~~VW~~~--~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFSPDGKFL-ASIGAD-SARVWSVN--TGAAL 220 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeCCCCcEE-EEecCC-ceEEEEec--cCchh
Confidence 67899998 99999999999999999888888888888887 99999999999988 888878 89999999 77666
Q ss_pred EeecCCCCCCCeEEEEEcCCC---CcEEEE-EecCCeEEEEecCCCCC----CeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 181 STVQPSASRSAVCCVEFHPFG---SSLVAA-GCADKKAYAYDVRKMVD----PVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~---~~~l~~-~~~d~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
..............+.|+.++ .-++++ -..-+.|+.||+..... +......-...|.+++.+ +|++++.|+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 666655555567777887664 223333 33446677776654322 222222334579999999 999999999
Q ss_pred CCCcEEEEecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 252 TDGCLKLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
.||.|.|++..+.+.++-.+ .|...|+.+.|+ |+.+++++.+.|....+..+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~--Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS--PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEc--CCcCcccccccCCceeEEEEee
Confidence 99999999999887776654 687777777777 9999999999999999988764
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=1.4e-18 Score=142.15 Aligned_cols=228 Identities=16% Similarity=0.184 Sum_probs=190.9
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
-+.+.++.+ |+.|+.|+..|.|..+|..+++...++.... .|.++.|..+.+++ |++ ....+++||-. +..
T Consensus 132 PY~~~ytrn--GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~LHneq~~-AVA-QK~y~yvYD~~---GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRN--GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFLHNEQFF-AVA-QKKYVYVYDNN---GTE 202 (545)
T ss_pred CeeeeecCC--ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhhcchHHH-Hhh-hhceEEEecCC---CcE
Confidence 567888988 9999999999999999999999998887776 79999999877665 554 56789999976 677
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEE
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i 258 (366)
++.++... .|..+.|-|.. .+|++++..|.+.--|+.++ +.+..+....+.+..|.-+ -+..+-+|...|+|.+
T Consensus 203 lHClk~~~---~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 203 LHCLKRHI---RVARLEFLPYH-FLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred EeehhhcC---chhhhcccchh-heeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 77776433 89999999987 89999999999999999998 7888888778888888887 6678889999999999
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
|...+.+++..+..|.++|..+++. ++|+|++|.+.|..++|||+++-..+..+.. ..+...+++|.
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~--~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---------p~~a~~ls~Sq-- 344 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVD--RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---------PHPASNLSLSQ-- 344 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEEC--CCCcEEeecccccceeEeeeccccccceeec---------CCCcccccccc--
Confidence 9999999999999999999999988 9999999999999999999998776555432 23567788875
Q ss_pred CCceEEEEeCCCCcEEEEE
Q 017773 339 EDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 339 ~~~~~l~s~~~dg~i~iw~ 357 (366)
.| +||.+ ....|.||.
T Consensus 345 -kg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 345 -KG-LLALS-YGDHVQIWK 360 (545)
T ss_pred -cc-ceeee-cCCeeeeeh
Confidence 43 44444 445689995
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.9e-16 Score=123.65 Aligned_cols=287 Identities=15% Similarity=0.224 Sum_probs=185.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
.+-.+..++|++.-..+|++..|-.|++|+-.. .... .+.... ...|+|++|.|. .+..|+.|+..
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt---~Lks~s---------QrnvtclawRPl-saselavgCr~ 162 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPT---KLKSVS---------QRNVTCLAWRPL-SASELAVGCRA 162 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCc---eecchh---------hcceeEEEeccC-Ccceeeeeecc
Confidence 455678899999777889999999999999766 2222 111111 246999999998 35677887765
Q ss_pred CcEEEEeCCCC----c----------eeEeeecCCCCceeeEEeccCCCceEEEec-CCCcEEEeeCCCCCCceeEeecC
Q 017773 121 GVVMEYDLEKK----V----------PIFERDEHGGRRVWSVDYSKGDPVLGASGS-DDGTMQMWDPRCDGGKCVSTVQP 185 (366)
Q Consensus 121 g~i~iw~~~~~----~----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~dg~v~~~d~~~~~~~~~~~~~~ 185 (366)
| |.+|..... + .+...++| .+|+++.|+++|..+ ++++ .|..|.+||.. ++..+....
T Consensus 163 g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l-~tAS~gsssi~iWdpd--tg~~~pL~~- 235 (445)
T KOG2139|consen 163 G-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTIL-VTASFGSSSIMIWDPD--TGQKIPLIP- 235 (445)
T ss_pred e-eEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEE-eecccCcceEEEEcCC--CCCcccccc-
Confidence 4 999986532 1 12223344 399999999999988 5554 57889999999 444444332
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
...+.+.-+.|+|+| .+++++..|+..++|+....... .......+.|...+|+ .|.+|+.+.. |.-++|.+.-.
T Consensus 236 -~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~-erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~ 311 (445)
T KOG2139|consen 236 -KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK-ERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFD 311 (445)
T ss_pred -cCCCceeeEEEcCCC-CEEEEecccceeeeehhccccee-cceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeec
Confidence 233488899999999 78888889999999966544222 2223345589999999 7776554442 33345544211
Q ss_pred ----c-----------eeeeee-----cc----cceeeeEEEEEecCCCeEEEecCCC--------eEEEEEeecCceEE
Q 017773 265 ----R-----------VIRTYK-----GH----VNNRNFVGLSVWRHGGLLGCGSETN--------QVFVYDVRWGEPVW 312 (366)
Q Consensus 265 ----~-----------~~~~~~-----~~----~~~~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~ 312 (366)
. ++..+. .. .++..+++|. |.|.+|++.-..+ .|.+||.+..-+..
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD--psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD--PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC--CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 0 111111 11 2345567766 9999999875543 46778877554443
Q ss_pred EEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 313 VHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
....+ ...+ .....++|+|...++.+|..+=.-|.+.-|.+.
T Consensus 390 ls~cg---~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 390 LSYCG---MIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEecc---cccC--CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 32111 1111 125677888877677777777777888777654
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.8e-17 Score=130.02 Aligned_cols=270 Identities=13% Similarity=0.150 Sum_probs=199.5
Q ss_pred CCCceEEEEECCCCC--EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDS--VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
-...|..++|.-+++ .+...+.+..+..+.+......... ..........++|..++... ..|++|-
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~~l~~~~I~gl~~~d----g~Litc~ 122 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTVSLGTKSIKGLKLAD----GTLITCV 122 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------ccccccccccccccchhhcC----CEEEEEe
Confidence 467788888886663 4555445666777766654433311 00011122235677777663 4777888
Q ss_pred CCCcEEEEeCCCCc----eeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEeecCCC-----
Q 017773 119 YDGVVMEYDLEKKV----PIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTVQPSA----- 187 (366)
Q Consensus 119 ~dg~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~~~~~----- 187 (366)
.+|.+.+|..+.+. +...+..+. .+..+.-++..++++++|+.. ..+.+||+. ..+.+..-+...
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle--~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLE--QSKQIWSAKNVPNDRLG 198 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecc--cceeeeeccCCCCcccc
Confidence 89999999988442 333444443 788888889899998889998 889999998 444444332211
Q ss_pred --CCCCeEEEEEcCCC-CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 188 --SRSAVCCVEFHPFG-SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 188 --~~~~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
-+-.++++.|-|.. .+.+++++.-+.+++||.+.+.+|+..+.--..+++++... +++.+++|..-|.+..||++.
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 12356788887751 37899999999999999999888999998888999999988 899999999999999999999
Q ss_pred Cceeee-eecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 264 SRVIRT-YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
++.+.. +.+-.+.++.+.+. |.++++++++-|..|+|+|+.+.+++...-+ ...++.+.+.+
T Consensus 279 ~kl~g~~~kg~tGsirsih~h--p~~~~las~GLDRyvRIhD~ktrkll~kvYv---------Ks~lt~il~~~ 341 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCH--PTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---------KSRLTFILLRD 341 (412)
T ss_pred ceeeccccCCccCCcceEEEc--CCCceEEeeccceeEEEeecccchhhhhhhh---------hccccEEEecC
Confidence 988877 88888888888877 9999999999999999999999776644321 34566666654
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.4e-17 Score=129.77 Aligned_cols=245 Identities=16% Similarity=0.180 Sum_probs=185.0
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEee------ecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFER------DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
..|+.++|..++..+.+...+.+..+....+......... ..... +|..++.. +..| ++|-.+|.+.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~-~I~gl~~~--dg~L-itc~~sG~l~~~~ 131 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTK-SIKGLKLA--DGTL-ITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccc-cccchhhc--CCEE-EEEecCCcEEEEe
Confidence 4688899987755666776667777887777765444332 22333 66666654 3445 7888899999999
Q ss_pred CCCCC--CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC--CeEEEEecCCCCCCeeEeec---------ccCcEEE
Q 017773 172 PRCDG--GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD--KKAYAYDVRKMVDPVLVFDG---------HRKTVTY 238 (366)
Q Consensus 172 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~---------~~~~v~~ 238 (366)
.+.+. ...+..+... .++..+.-+|..+.++++|+.. ..+.+||+... +.+..-+. -.-.++.
T Consensus 132 ~k~~d~hss~l~~la~g---~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG---PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred ccCCccccccceeeecC---CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeecc
Confidence 88433 2333334322 3777888888877888889999 88999999876 33332211 1134667
Q ss_pred EEEc-C--CCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 239 IRFL-D--VDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 239 ~~~~-~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
+.|- . ...|++++.-+.+++||.+.+ +++..+.-...++.++... |+++++++|..-|.+..||++.++.....
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~--p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT--PSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec--CCCcEEEEecccchhheecccCceeeccc
Confidence 7786 3 678999999999999999876 7888888778888888888 99999999999999999999998877552
Q ss_pred ecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 315 DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
- .+-.+.|+++..+| .+.+|+++|-|..|||+|+++..
T Consensus 286 ~-------kg~tGsirsih~hp---~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 286 L-------KGITGSIRSIHCHP---THPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred c-------CCccCCcceEEEcC---CCceEEeeccceeEEEeecccch
Confidence 1 56789999999999 66699999999999999999844
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=8.1e-17 Score=125.96 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=162.3
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC 174 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~ 174 (366)
++|+|.+|+++ +..+|.+.....|.||.....+ ...++..|.. .|+.++|.|..+.+ ++++.|..-++|....
T Consensus 11 ~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~snrI-vtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKSNRI-VTCSHDRNAYVWTQPS 86 (361)
T ss_pred CceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCCCce-eEccCCCCccccccCC
Confidence 57999999999 9999999999999999987654 6677888888 99999999999998 9999999999999841
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeecccCcEEEEEEc-CCCEEEEE
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
.++-..++....+....+++.|+|.+ +.+|+|+....|.+|-++....- .+.-+.+...|++++|+ ++-+|++|
T Consensus 87 -~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 -GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred -CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 44444444433566699999999998 89999999999999988764221 22334577889999999 77788999
Q ss_pred eCCCcEEEEecCC------------------CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 251 GTDGCLKLWNVND------------------SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 251 ~~d~~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
+.|+..+++..-- |+++.++....+.+..+.|+ |+|..|+-.+.|+.+.+-|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs--~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS--PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC--CCCCEeeEecCCCceEEeecCCCc
Confidence 9999999986521 13334443445566667766 999999999999999999876554
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=7.7e-19 Score=153.27 Aligned_cols=243 Identities=17% Similarity=0.212 Sum_probs=188.3
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
+....+.+|-..|+|+.|... |.++++|+.|..++||..++..+.....+|.+ .|+.++.+.++-.+ ++++.|..|
T Consensus 181 k~ikrLlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~i-aaaS~D~vI 256 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMI-AAASNDKVI 256 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc--cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccchhhhhh-hhcccCceE
Confidence 334457788899999999998 99999999999999999999999999999998 99999998866555 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE---ee-cccCcEEEEEEc-
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV---FD-GHRKTVTYIRFL- 242 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~-~~~~~v~~~~~~- 242 (366)
++|.+. .+.++..+. +|.+.|++++|+|-- +.+.||++++||.+-. ..... .. .....+.++.|.
T Consensus 257 rvWrl~--~~~pvsvLr--ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 257 RVWRLP--DGAPVSVLR--GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred EEEecC--CCchHHHHh--ccccceeeeccCccc-----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccc
Confidence 999999 888888887 888999999999953 6679999999999821 11111 11 122445666665
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccccc
Q 017773 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
.+..++|++.|+.-..|.+... ..+...+..+..+ +....+.+++-.+-.+++|++.+|......
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~s-sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-------- 391 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRS-SDLSSIVVTARNDHRLCVWNLYTGQLLHNL-------- 391 (1113)
T ss_pred cccccccccCCcccccchhhHh------hhhccceEEEecc-ccccccceeeeeeeEeeeeecccchhhhhh--------
Confidence 7888999999999888876432 1122221112111 011245666777888999999999876554
Q ss_pred CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 323 GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 323 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
.+|...+..+.++|.++ ....+++.||...|||+..+
T Consensus 392 ~ghsd~~yvLd~Hpfn~--ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNP--RIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred cccccceeeeeecCCCc--HhhhhccCCCceEeeecccC
Confidence 67899999999999766 56678999999999998653
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.5e-16 Score=123.81 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=184.5
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEE
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEY 126 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 126 (366)
-++|||+|+++|+.+.- .+.|-|.++-+..+.... -..|.-+.|..+ ....|.....++.|.+|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--------------ldki~yieW~ad-s~~ilC~~yk~~~vqvw 76 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--------------LDKIVYIEWKAD-SCHILCVAYKDPKVQVW 76 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--------------HHHhhheeeecc-ceeeeeeeeccceEEEE
Confidence 46899999999999754 788888777554331111 124778999987 23445566788999999
Q ss_pred eCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEE
Q 017773 127 DLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 206 (366)
++...+-...+..... ++.+++|+|+|+.++.+...+-.|.+|.+. +.+.. .++...+ .+..++|+|+| ++.+
T Consensus 77 sl~Qpew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~lriTVWSL~--t~~~~-~~~~pK~--~~kg~~f~~dg-~f~a 149 (447)
T KOG4497|consen 77 SLVQPEWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDLRITVWSLN--TQKGY-LLPHPKT--NVKGYAFHPDG-QFCA 149 (447)
T ss_pred EeecceeEEEeccCCC-cceeeeECCCcceEeeeecceeEEEEEEec--cceeE-Eeccccc--CceeEEECCCC-ceee
Confidence 9999888888888777 899999999999998999999999999998 33332 2332223 56788889888 5555
Q ss_pred EEec-C-----------------------------------CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 207 AGCA-D-----------------------------------KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 207 ~~~~-d-----------------------------------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
..+. | ..+.+||---. ..+..+ .-.-.+..++|+ .+++|+.
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aY-e~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAY-ERGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-heeeee-eeccceeEEEeccccceEEe
Confidence 5432 1 12333332111 011111 122467788999 6899999
Q ss_pred EeCCCcEEEEecCCCcee------------------------------------------------------------ee
Q 017773 250 AGTDGCLKLWNVNDSRVI------------------------------------------------------------RT 269 (366)
Q Consensus 250 ~~~d~~i~iwd~~~~~~~------------------------------------------------------------~~ 269 (366)
|+.|+.+|+.+--+.++. ..
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~ 307 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK 307 (447)
T ss_pred eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence 999999888553221110 01
Q ss_pred ee------cccceeeeEEEEEecCCCeEEEecC--CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCc
Q 017773 270 YK------GHVNNRNFVGLSVWRHGGLLGCGSE--TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 270 ~~------~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
++ .....+..++ |++|..++++-.+ -+.+-+||+++.+....+. ...+|....|.|..|
T Consensus 308 lkp~tD~pnPk~g~g~la--fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---------Qk~piraf~WdP~~p-- 374 (447)
T KOG4497|consen 308 LKPPTDFPNPKCGAGKLA--FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI---------QKHPIRAFEWDPGRP-- 374 (447)
T ss_pred ccCCCCCCCcccccceee--ecCCceEEeeecCCCCceEEEEechhhhhhhhhh---------hccceeEEEeCCCCc--
Confidence 11 0111223344 4499999988754 3679999999776654432 246799999999665
Q ss_pred eEEEEeCCCCcEEEEEecc
Q 017773 342 CTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 342 ~~l~s~~~dg~i~iw~~~~ 360 (366)
.|+.+.....+++|...+
T Consensus 375 -rL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 375 -RLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -eEEEEcCCceEEEEcCCC
Confidence 677666667799998765
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6e-16 Score=130.17 Aligned_cols=279 Identities=14% Similarity=0.152 Sum_probs=194.1
Q ss_pred CCCceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
++..-+.|..+|||+|+ |||..--.|++||+..... .+..|.. +.+..+....+. -..++.-..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----KFERhlD---------ae~V~feiLsDD-~SK~v~L~~ 114 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----KFERHLD---------AEVVDFEILSDD-YSKSVFLQN 114 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee-----eeeeccc---------ccceeEEEeccc-hhhheEeec
Confidence 88889999999999975 6677788999999987433 2333332 223333333221 333444445
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|.+|.+-.. .|. -..+.... .-.+++++.-..-| +.++....|+-++++ .+..+..+.... +.++++..++
T Consensus 115 DR~IefHak-~G~-hy~~RIP~--~GRDm~y~~~scDl-y~~gsg~evYRlNLE--qGrfL~P~~~~~--~~lN~v~in~ 185 (703)
T KOG2321|consen 115 DRTIEFHAK-YGR-HYRTRIPK--FGRDMKYHKPSCDL-YLVGSGSEVYRLNLE--QGRFLNPFETDS--GELNVVSINE 185 (703)
T ss_pred Cceeeehhh-cCe-eeeeecCc--CCccccccCCCccE-EEeecCcceEEEEcc--cccccccccccc--ccceeeeecC
Confidence 666655432 221 11222222 33467776555556 444455678888998 888888887543 4899999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEee------cccC-----cEEEEEEc-CCCEEEEEeCCCcEEEEecCCCcee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFD------GHRK-----TVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
.. .+|++|+.+|.|..||.+.. ..+..+. .|.+ .|+++.|+ +|-.+++|..+|.+.|||+++.+++
T Consensus 186 ~h-gLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 186 EH-GLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred cc-ceEEecccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 87 79999999999999999986 3333332 2333 49999999 6889999999999999999999887
Q ss_pred eeeecccceeeeEEEEEecC--CCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEE
Q 017773 268 RTYKGHVNNRNFVGLSVWRH--GGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLV 345 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 345 (366)
.. ..|........+.|.+. +..+++. +...++|||-.+|++...++. ...++.+++-| ++-+++
T Consensus 264 ~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------t~~lND~C~~p---~sGm~f 329 (703)
T KOG2321|consen 264 LV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------TSDLNDFCFVP---GSGMFF 329 (703)
T ss_pred ee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------cCCcCceeeec---CCceEE
Confidence 54 44666666666655443 4556665 457899999999999877652 45699999999 666999
Q ss_pred EeCCCCcEEEEEec
Q 017773 346 AGGSDGLLHVFVGK 359 (366)
Q Consensus 346 s~~~dg~i~iw~~~ 359 (366)
++-.++.+..|=+.
T Consensus 330 ~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 330 TANESSKMHTYYIP 343 (703)
T ss_pred EecCCCcceeEEcc
Confidence 99888887776543
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-16 Score=124.30 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=181.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceeccc--ccceeeeecCceeceeee--ecCCceeEEEEecCCCCcEEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLV--DHPVVAVVDHSKVCDYYI--CTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
..+-|.++.|...|.+||||..+|.|.++.-..... -.....+..|.....++. .-...|..+.|.+..+...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 356799999999999999999999999997654322 112234455555554443 2346799999999866677788
Q ss_pred EcCCCcEEEEeCCCCceeE-----------------------------------eee-cCCCCceeeEEeccCCCceEEE
Q 017773 117 GDYDGVVMEYDLEKKVPIF-----------------------------------ERD-EHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~-----------------------------------~~~-~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
.+.|.+|++|.+....... .+. .|. .-|.++.++.|...+ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt-yhiNSIS~NsD~Et~-lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT-YHINSISVNSDKETF-LS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce-eEeeeeeecCccceE-ee
Confidence 8889999999875421110 111 222 268889999888876 55
Q ss_pred ecCCCcEEEeeCCCCCCceeEeecCCCC-----CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeE----
Q 017773 161 GSDDGTMQMWDPRCDGGKCVSTVQPSAS-----RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLV---- 228 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~---- 228 (366)
+ +|=.|.+|+++.. .+....+....+ ..-|++..|+|...++++-.+..|+|++.|+|...-+ ...
T Consensus 182 A-DdLRINLWnlei~-d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 182 A-DDLRINLWNLEII-DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred c-cceeeeecccccc-CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 4 5778999999842 333333322222 2368899999998889999999999999999953111 111
Q ss_pred --------eecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec-CCCceeeeeecccce------------e-eeEEEEEe
Q 017773 229 --------FDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV-NDSRVIRTYKGHVNN------------R-NFVGLSVW 285 (366)
Q Consensus 229 --------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~------------~-~~~~~~~~ 285 (366)
+..--..|..+.|+ +|+++++-. --+|++||+ ...+++.+++.|..- | .-..++|+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 11223468889999 888887754 368999999 456888888766421 1 11234455
Q ss_pred cCCCeEEEecCCCeEEEEEeecC
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
-++.++++|+..+..++++...|
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcceEecccccceEEEecCCCC
Confidence 78889999999999999996544
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=6.8e-16 Score=140.47 Aligned_cols=263 Identities=17% Similarity=0.101 Sum_probs=175.2
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
+..|...+..++.++. .+.++++|+.||+|++||..+- +...++.. .+.++.++.+.+.+..+ |.++.||
T Consensus 1044 L~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~-Av~t~DG 1120 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQF-AVSTKDG 1120 (1431)
T ss_pred hhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeE-EEEcCCC
Confidence 4456778888888876 3599999999999999998642 22223332 33489999999999988 8889999
Q ss_pred cEEEeeCCCCCCc-----eeEeecCCCCCCCeEEEEEcCCCCc-EEEEEecCCeEEEEecCCCCCCee--EeecccCcEE
Q 017773 166 TMQMWDPRCDGGK-----CVSTVQPSASRSAVCCVEFHPFGSS-LVAAGCADKKAYAYDVRKMVDPVL--VFDGHRKTVT 237 (366)
Q Consensus 166 ~v~~~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~v~ 237 (366)
.|.+.++.....+ +............+..-++...... .++.+...+.|..||+++.. ... ......+.|+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGLVT 1199 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCcccccee
Confidence 9999999831111 1111111112223334444443334 78888899999999999862 222 2233457899
Q ss_pred EEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEec-CCCeEEE-ec-CCCeEEEEEeecCceEE
Q 017773 238 YIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWR-HGGLLGC-GS-ETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 238 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~-~~-~dg~i~iwd~~~~~~~~ 312 (366)
+++.+ .++++++|...|.+.+||++=+.++..+.. +..++.-+.+++-+ .....++ ++ ..+.|.+|++.+|....
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999 788999999999999999999988887752 33556666666332 2344444 44 57889999999987666
Q ss_pred EEecc-cccc----c------CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 313 VHDFE-PVTA----A------GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 313 ~~~~~-~~~~----~------~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+-.. .... . ..+.-......+.. .+..+.+|+.|..|+.||...-.
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~---~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCE---KNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeeccc---CCceeeecCCccceeeccCCCcc
Confidence 55332 1000 0 01222222233332 44589999999999999986543
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.7e-17 Score=135.19 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=160.7
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC-CCceEEEecCCCcEEEe
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG-DPVLGASGSDDGTMQMW 170 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~~dg~v~~~ 170 (366)
.+.+|++-|+|+.|+.+ |.+|++|+.|-.+.|||.-..+.+..+...+...|.++.|-|. +..++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCC--CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 46788899999999999 9999999999999999999888887776544459999999985 45667999999999999
Q ss_pred eCCCCC------CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe---------ecccCc
Q 017773 171 DPRCDG------GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---------DGHRKT 235 (366)
Q Consensus 171 d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~ 235 (366)
|+...+ +..........|...|..++..|++++.+.++++||+|+-||+|....+.... ...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 998311 11111222235777899999999998999999999999999999852221111 112234
Q ss_pred EEEEEEc--CCCEEEEEeCCCcEEEEecCCC------------------ceeeeee-ccc--------ceeee-EEEEEe
Q 017773 236 VTYIRFL--DVDTLVTAGTDGCLKLWNVNDS------------------RVIRTYK-GHV--------NNRNF-VGLSVW 285 (366)
Q Consensus 236 v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~------------------~~~~~~~-~~~--------~~~~~-~~~~~~ 285 (366)
..++..+ +..+|+.|+.|-..++||.+.. .++..+. +|. ..+.+ .-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 5677777 7789999999999999995321 0122221 121 11212 223455
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
|+|.-|+..-....|+++|+..++....+.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 999877766666689999999887765553
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=3.3e-16 Score=137.65 Aligned_cols=211 Identities=15% Similarity=0.086 Sum_probs=139.9
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+..|.+||.+... ...+..+.. .+.+.+|+|+|+.++++...+ ..|++||+. +++........+ ....++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~--tg~~~~l~~~~g---~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR--SGARKVVASFRG---HNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCC--CCceEEEecCCC---ccCceeE
Confidence 4689999987655 344555555 899999999999984443322 469999998 444332222223 3346899
Q ss_pred cCCCCcEEEEEecCCeEEEE--ecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecCCC-ceeeeeec
Q 017773 198 HPFGSSLVAAGCADKKAYAY--DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVNDS-RVIRTYKG 272 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~ 272 (366)
+|+|..++++...+|.+.|| |+.++ ....+..+...+....|+ +++.|+..+ .++...+|++... .....+ .
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 99994444444567765555 55554 455666677778889999 888766554 5788888887543 222222 3
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
+.. .... ++|+|+.|+..+.++ +.+||+.+++...... .+ ...++.|+| ||++|+.++.+|.
T Consensus 333 ~~~--~~~~--~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~--------~~--~~~~~~~sP---dG~~i~~~s~~g~ 394 (429)
T PRK01742 333 GRG--YSAQ--ISADGKTLVMINGDN-VVKQDLTSGSTEVLSS--------TF--LDESPSISP---NGIMIIYSSTQGL 394 (429)
T ss_pred CCC--CCcc--CCCCCCEEEEEcCCC-EEEEECCCCCeEEecC--------CC--CCCCceECC---CCCEEEEEEcCCC
Confidence 332 2334 459999998887765 6669998886542211 11 234678999 8889999999998
Q ss_pred EEEEEe
Q 017773 353 LHVFVG 358 (366)
Q Consensus 353 i~iw~~ 358 (366)
+.+|.+
T Consensus 395 ~~~l~~ 400 (429)
T PRK01742 395 GKVLQL 400 (429)
T ss_pred ceEEEE
Confidence 888875
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=3.1e-16 Score=130.87 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=157.0
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEE-----ecCCCCcEEEEEcC
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKW-----KPGTSGRVLGSGDY 119 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~l~~~~~ 119 (366)
+....++-.|.+|+-.- ...+.+|+............... +.+ ....|-+| .|. +--|+.|-.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~-------y~g--t~P~cHdfn~~~a~~~--g~dllIGf~ 193 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKRE-------YKG--TSPTCHDFNSFTATPK--GLDLLIGFT 193 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhc-------ccC--CCCceecccccccCCC--CcceEEeec
Confidence 44445555566766643 34688998875332221111000 010 11233333 233 666777877
Q ss_pred CCcEEEEeCCCCceeEee---ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC------------CceeEeec
Q 017773 120 DGVVMEYDLEKKVPIFER---DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG------------GKCVSTVQ 184 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~------------~~~~~~~~ 184 (366)
-|.|.+.|....+..+.+ ..-.+..|+++.|-|.++.+++++-.+|.+++||..... +.......
T Consensus 194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 899999987663222111 111223899999999999998999999999999764211 00111100
Q ss_pred C------------CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 185 P------------SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 185 ~------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
. .-..+.|...+|+||| ++||+.+.||.++|||..+. +.+..++..-+...|++|+ |++++++|+
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 0 0123478899999998 89999999999999999987 6666666677889999999 999999999
Q ss_pred CCCcEEEEecCCCceeeeeecccceeeeEEEE
Q 017773 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
.|..|.||.+...+.+..=++|...|..++|.
T Consensus 352 EDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 352 EDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred CcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999999999999999887
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.8e-15 Score=128.70 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=139.2
Q ss_pred CceeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGD---YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDP 172 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~ 172 (366)
..+...+|+|+ |+.|+..+ .+..|.+|++.+++..... ...+ .+....|+|+|+.++++.+.+| .|++||+
T Consensus 199 ~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 199 QPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 46899999999 98887653 2457999999887643322 2222 4557899999999866656555 4888998
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
. +++...... +...+....|+|+|..++++...++. |+++|+.++ ....+..+........|+ +++.++.
T Consensus 275 ~--tg~~~~lt~---~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 275 A--SGQIRQVTD---GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred C--CCCEEEccC---CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecCCCCccCEEECCCCCEEEE
Confidence 7 554433322 23367789999999444444444444 555566554 334444344455678898 8888877
Q ss_pred EeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCe---EEEEEeecCceEEEEecccccccC
Q 017773 250 AGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ---VFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 250 ~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
.+.+ ..|.+||+.+++.. .+.... ...... |+|||+.|+.++.++. +.++++. |+....+ .
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~~-~~~~p~--~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l--------~ 414 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ-VLTDTF-LDETPS--IAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL--------P 414 (429)
T ss_pred EEccCCCceEEEEECCCCCeE-EeCCCC-CCCCce--ECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC--------c
Confidence 6543 35888999887543 333221 122334 5599999998887764 6666664 4443333 3
Q ss_pred CCCceeeEEEeec
Q 017773 324 SERGFVSSVCWRR 336 (366)
Q Consensus 324 ~~~~~v~~~~~~~ 336 (366)
+|.+.+...+|+|
T Consensus 415 ~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 ATDGQVKFPAWSP 427 (429)
T ss_pred cCCCCcCCcccCC
Confidence 4677888999988
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=129.94 Aligned_cols=265 Identities=16% Similarity=0.223 Sum_probs=191.1
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQ 168 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~ 168 (366)
..+..|.+.|..+.|+.. |..|++|+.|..|.+||...++....+...+...|....|.|. .+.+ ++++.||.++
T Consensus 136 ~kL~~H~GcVntV~FN~~--Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti-~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQR--GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTI-VTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeeccc--CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCc-eeccccCcee
Confidence 346678899999999998 9999999999999999999998888876655558888888885 3344 8999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe---ecccC---cEEEEEEc
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---DGHRK---TVTYIRFL 242 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~---~v~~~~~~ 242 (366)
+=.+. .++.+..+.....|.++|..++..|...+-+.+++.|+.+.-+|++.. .+...+ ..+.. ....++..
T Consensus 213 ~s~i~-~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 213 VSEIL-ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeec-cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceeeeeEecC
Confidence 98776 244444455556788999999999999899999999999999999876 332222 22333 45677776
Q ss_pred --CCCEEEEEeCCCcEEEEecCCCc------eeeeeecc----cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 243 --DVDTLVTAGTDGCLKLWNVNDSR------VIRTYKGH----VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 243 --~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
+...+++++.|..+++||.+.-. .+.++..| ..++.+.++.++.++.-|.++-.|-.|+++.-.-+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 56689999999999999987542 22333322 2334444444547887777777888899995432211
Q ss_pred --EEEE---ecccccccCCCCc--eeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 311 --VWVH---DFEPVTAAGSERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 311 --~~~~---~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.... .......+++|.. .|.++-|- +|...++++|+.-|.|.||+-.++.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchhH
Confidence 0000 0001122466654 57788774 3467799999999999999987754
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.1e-15 Score=120.10 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=165.2
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG- 176 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~- 176 (366)
..+..++|++. -..++++..|-.|++|+-.. +....++....+.|++++|-|.+..-++.|+.. -|.+|......
T Consensus 99 ~dlr~~aWhqH--~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQH--IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechh--hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 45788999997 77889999999999999876 444555555555899999999887776777765 59999876211
Q ss_pred -Cc--------eeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 177 -GK--------CVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 177 -~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
.. ....++..+| .+|++++|.++| ..+++++ .|..|.|||..++. .+......-+.+.-+.|+ +++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~-~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCC-cccccccCCCceeeEEEcCCCC
Confidence 11 1222333344 699999999999 5666554 67889999999873 333223345678899999 999
Q ss_pred EEEEEeCCCcEEEEecCC-CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC-ce-E-----------
Q 017773 246 TLVTAGTDGCLKLWNVND-SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG-EP-V----------- 311 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~----------- 311 (366)
+|+++.-|+..++|.... ....+-.. ..+.+...+|+ |+|++|.-... |.=++|.+.-. +. .
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWs--pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWS--PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred EEEEecccceeeeehhcccceecceec-cCCceeeeeec--CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence 999999999999995443 33333333 33366666666 99998765433 33445554311 10 0
Q ss_pred EEEecccccccCC---CCceeeEEEeeccCCCceEEEEeCCCC--------cEEEEEeccc
Q 017773 312 WVHDFEPVTAAGS---ERGFVSSVCWRRVGEDECTLVAGGSDG--------LLHVFVGKKK 361 (366)
Q Consensus 312 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~s~~~dg--------~i~iw~~~~~ 361 (366)
...++.......+ .-+++.+++|.| .|.+||+.-..+ .|.+||.+.-
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDp---sGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDP---SGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECC---CCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 0111111111111 246789999999 777999875443 3566666543
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=119.08 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=167.3
Q ss_pred EEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeE
Q 017773 102 SLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~ 181 (366)
-.+|+|+ |+++|+++.- .+.|-|.++-+..+.+..-. .|.-+.|..+..+++.....++.|.+|++. ..+-..
T Consensus 13 ~c~fSp~--g~yiAs~~~y-rlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~--Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPC--GNYIASLSRY-RLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLV--QPEWYC 85 (447)
T ss_pred ceeECCC--CCeeeeeeee-EEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEee--cceeEE
Confidence 3679999 9999999854 78888887766555444433 688899999988887888899999999998 444444
Q ss_pred eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC--------
Q 017773 182 TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-------- 252 (366)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------- 252 (366)
.+. ....++.+++|+|+|+.++.+...+-.|.+|.+.+. ....+.-.+..+..++|+ ++++.+.++.
T Consensus 86 kId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 86 KID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred Eec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 444 556699999999999888889999999999999885 333333334456778888 7777666642
Q ss_pred ----------------------------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 253 ----------------------------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 253 ----------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
+..+.+||.--.-.+..+.. .-.+..+.++ |.+++|+.|+.|+.+++.+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-~lG~k~v~ws--P~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-GLGLKFVEWS--PCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee-ccceeEEEec--cccceEEeeccchhhhhhc
Confidence 22344444321111112211 1234445555 9999999999999998865
Q ss_pred eecCceEEEE----------------------------------------------------------ecccccccCCCC
Q 017773 305 VRWGEPVWVH----------------------------------------------------------DFEPVTAAGSER 326 (366)
Q Consensus 305 ~~~~~~~~~~----------------------------------------------------------~~~~~~~~~~~~ 326 (366)
--+.++..++ ...+..-.....
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 4332221111 000111112223
Q ss_pred ceeeEEEeeccCCCceEEEEeCC--CCcEEEEEecccCCCCC
Q 017773 327 GFVSSVCWRRVGEDECTLVAGGS--DGLLHVFVGKKKPLSAQ 366 (366)
Q Consensus 327 ~~v~~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~l~~~ 366 (366)
..+.-++|++ |..++++-.+ -+.+.+||++..++.|+
T Consensus 319 ~g~g~lafs~---Ds~y~aTrnd~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 319 CGAGKLAFSC---DSTYAATRNDKYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred cccceeeecC---CceEEeeecCCCCceEEEEechhhhhhhh
Confidence 4577899999 8878888754 36799999998877653
No 226
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=7.9e-16 Score=128.52 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=151.4
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI 134 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 134 (366)
..|+.++.||.+.|.+-... .. ....+|.+.+.+-.|+|+ |.-|++++.||.|++|.-. |-..
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE-------------~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrs-GMLR 138 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VE-------------RSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRS-GMLR 138 (737)
T ss_pred ceEEEEcCCceEEEecccch-hh-------------hhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEecc-chHH
Confidence 46777788999988764331 11 134567788999999999 9999999999999999854 3323
Q ss_pred EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 135 FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 135 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
.++..... +|.|++|.|+...++++.+ +.+.+=.+. ....+... ..|.+-|.++.|+|.. .++++|++|-..
T Consensus 139 Stl~Q~~~-~v~c~~W~p~S~~vl~c~g--~h~~IKpL~--~n~k~i~W--kAHDGiiL~~~W~~~s-~lI~sgGED~kf 210 (737)
T KOG1524|consen 139 STVVQNEE-SIRCARWAPNSNSIVFCQG--GHISIKPLA--ANSKIIRW--RAHDGLVLSLSWSTQS-NIIASGGEDFRF 210 (737)
T ss_pred HHHhhcCc-eeEEEEECCCCCceEEecC--CeEEEeecc--cccceeEE--eccCcEEEEeecCccc-cceeecCCceeE
Confidence 33333333 9999999999998856544 456666665 33333333 3788899999999997 899999999999
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
++||... .++..-..|..+|++++|++...++.++. .++|+= ....+.+..+ +|++||..++.|
T Consensus 211 KvWD~~G--~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~-----------~p~~GSifnl--sWS~DGTQ~a~g 274 (737)
T KOG1524|consen 211 KIWDAQG--ANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFS-----------SPRVGSIFNL--SWSADGTQATCG 274 (737)
T ss_pred EeecccC--cccccCChhccceeeeeeccccceeeeee-eeeeec-----------CCCccceEEE--EEcCCCceeecc
Confidence 9999766 46777778999999999994466666653 344411 1123344444 455999999999
Q ss_pred cCCCeEEEE
Q 017773 295 SETNQVFVY 303 (366)
Q Consensus 295 ~~dg~i~iw 303 (366)
...|.+.+=
T Consensus 275 t~~G~v~~A 283 (737)
T KOG1524|consen 275 TSTGQLIVA 283 (737)
T ss_pred ccCceEEEe
Confidence 999987654
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.3e-14 Score=127.41 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=137.7
Q ss_pred CCceeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYD---GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
...+.+.+|+|+ |+.|+..+.+ ..|.+||+.+++.... ....+ .+....|+|+++.++++.+.+|...+|.+.
T Consensus 195 ~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 195 PEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCC-CccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 356889999999 9888876542 4599999998865433 22223 566899999999986777888887777654
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT 252 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 252 (366)
...+. ...+. .+........|+|+|..+++++..++...+|.+.........+..+........|+ ++++++..+.
T Consensus 271 ~~~~~-~~~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSG-LRRLT--QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCC-cEECC--CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 22333 33443 23335567889999954555544456666665542212233332222334467898 8999887765
Q ss_pred CC---cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC---eEEEEEeecCceEEEEecccccccCCCC
Q 017773 253 DG---CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN---QVFVYDVRWGEPVWVHDFEPVTAAGSER 326 (366)
Q Consensus 253 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++ .|.+||+.+++.. .+... .......| +|||+.|+..+.++ .+.+.++ +++....+ ..+.
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~--spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l--------~~~~ 414 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSF--APNGRYILYATQQGGRSVLAAVSS-DGRIKQRL--------SVQG 414 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC-CCccCceE--CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe--------ecCC
Confidence 54 5999999887644 33322 12234444 49999988776543 3555555 34444333 2244
Q ss_pred ceeeEEEeec
Q 017773 327 GFVSSVCWRR 336 (366)
Q Consensus 327 ~~v~~~~~~~ 336 (366)
+.+...+|+|
T Consensus 415 g~~~~p~wsp 424 (427)
T PRK02889 415 GDVREPSWGP 424 (427)
T ss_pred CCCCCCccCC
Confidence 6677888887
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.3e-14 Score=124.81 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=148.2
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeec---CCeEEEEEceecccccceeeeecCceeceeee
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGI---ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
..+..|+.++.....-. .+...+.+.+|||||+.|+..+. +..|.+|++.+++... +...
T Consensus 179 ~~l~~~d~dg~~~~~lt-----~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----l~~~-------- 241 (429)
T PRK03629 179 YELRVSDYDGYNQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASF-------- 241 (429)
T ss_pred eeEEEEcCCCCCCEEee-----cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ccCC--------
Confidence 35666666665432211 14668999999999998886542 3578999987654221 1111
Q ss_pred ecCCceeEEEEecCCCCcEEEEE-cCCC--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe-
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSG-DYDG--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW- 170 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~-~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~- 170 (366)
.+.+....|+|+ |+.|+.. +.+| .|.+||+++++..... .+.. .+....|+|+++.++++...++...+|
T Consensus 242 --~~~~~~~~~SPD--G~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 242 --PRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred --CCCcCCeEECCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCC-CcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 123456899999 8877754 4444 5889999887654433 3333 678899999999885665555555555
Q ss_pred -eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC--CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 171 -DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD--KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 171 -d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
|+. .++. ..+.... .......|+|+|..+++++..+ ..|++||+.++ . ...+... .......|+ +++.
T Consensus 316 ~d~~--~g~~-~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG~~ 387 (429)
T PRK03629 316 VNIN--GGAP-QRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNGTM 387 (429)
T ss_pred EECC--CCCe-EEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCCCE
Confidence 554 4433 3333222 2456789999994444444333 35888998876 2 3333321 223467788 9999
Q ss_pred EEEEeCCCc---EEEEecCCCceeeeeecccceeeeEEEE
Q 017773 247 LVTAGTDGC---LKLWNVNDSRVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 247 l~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
++.++.++. +.++++ ++.....+.+|.+.+...+|+
T Consensus 388 i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred EEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccC
Confidence 998887764 667776 455666777777666666665
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=1.8e-13 Score=116.61 Aligned_cols=276 Identities=14% Similarity=0.046 Sum_probs=172.5
Q ss_pred CEE-EEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 55 SVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 55 ~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+++ ++-..+|.|.+.|..+.+... .+.... ..-..+.|+|+ |+++++++.||.|.++|+.+++.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~---~i~~~~----------~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVA---RIPTGG----------APHAGLKFSPD--GRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEE---EEE-ST----------TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEE---EEcCCC----------CceeEEEecCC--CCEEEEEcCCCeEEEEECCcccE
Confidence 344 444567999999988765544 222211 12344779999 99999999999999999999999
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC-----CCCCeEEEEEcCCCCcEEEEE
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA-----SRSAVCCVEFHPFGSSLVAAG 208 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~ 208 (366)
+.+++... ...+++++++|++++++...++.+.++|.+ +.+.++.+...+ ....+..+..+|....++++-
T Consensus 71 v~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETT--T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEEEecCC--CcceEEEcCCCCEEEEEecCCCceeEeccc--cccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 99988766 678999999999997777789999999998 788888876432 234677888888874455555
Q ss_pred ecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE-EeCCCcEEEEecCCCceeeeeec----ccceeee---
Q 017773 209 CADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT-AGTDGCLKLWNVNDSRVIRTYKG----HVNNRNF--- 279 (366)
Q Consensus 209 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~--- 279 (366)
-..+.|.+.|......+...............|. ++++++. ...+..|.++|.++++.+..+.. |..+...
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 5568999999877633333333344566788888 7887655 45677899999999877766542 2221111
Q ss_pred ----EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe----CCCC
Q 017773 280 ----VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG----GSDG 351 (366)
Q Consensus 280 ----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~----~~dg 351 (366)
.-|.....+...++.-....+.+||..+.+.+..+... .++ .-+..+| +++++... ...+
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--------G~g-lFi~thP---~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--------GGG-LFIKTHP---DSRYVWVDTFLNPDAD 294 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--------SSS---EE--T---T-SEEEEE-TT-SSHT
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--------CCc-ceeecCC---CCccEEeeccCCCCCc
Confidence 11222223333322222335667888888888877642 233 6677788 77788887 4558
Q ss_pred cEEEEEeccc
Q 017773 352 LLHVFVGKKK 361 (366)
Q Consensus 352 ~i~iw~~~~~ 361 (366)
.|.++|.++-
T Consensus 295 ~v~viD~~tl 304 (369)
T PF02239_consen 295 TVQVIDKKTL 304 (369)
T ss_dssp -EEEEECCGT
T ss_pred eEEEEECcCc
Confidence 8999998874
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=125.86 Aligned_cols=216 Identities=13% Similarity=0.088 Sum_probs=137.6
Q ss_pred CCceeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEee
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDY---DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWD 171 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d 171 (366)
...+.+.+|+|+ |+.|+..+. +..|.+||+.+++.... ....+ ...+..|+|+|+.++++.+.+| .|++||
T Consensus 203 ~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 203 AEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred CCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 346889999999 988887763 34699999988765432 22232 4557899999998866666665 599999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
+. +++.. .+. .+.......+|+|+|..++++...+|. |+++|+.++ + ...+..+.......+|+ +++.++
T Consensus 279 ~~--~g~~~-~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 279 LG--SRQLT-RLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S-AERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred CC--CCCeE-ECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEEeecCCCCccCEEECCCCCEEE
Confidence 88 55433 333 233345678999999444444444554 666777664 2 33333333344568899 888887
Q ss_pred EEeCCC---cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEeccccccc
Q 017773 249 TAGTDG---CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 249 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
..+.++ .|.+||+.+++.. .+... ....... |+|||++++..+.+ +.|.++++..+ ....+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~~~~p~--~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l-------- 418 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLTPG-SLDESPS--FAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL-------- 418 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECCCC-CCCCCce--ECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc--------
Confidence 765443 5999999887654 33322 1222334 55999988766543 45777777533 33333
Q ss_pred CCCCceeeEEEeec
Q 017773 323 GSERGFVSSVCWRR 336 (366)
Q Consensus 323 ~~~~~~v~~~~~~~ 336 (366)
..+.+.+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 12345677778876
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.5e-14 Score=112.19 Aligned_cols=154 Identities=14% Similarity=0.198 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcEEEEEec---------CCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCEEEEE--eCCCcEEEE
Q 017773 193 CCVEFHPFGSSLVAAGCA---------DKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDTLVTA--GTDGCLKLW 259 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~--~~d~~i~iw 259 (366)
..+.|+|+|..+++.... -+...+|.++....+...+.. ..++|.+++|+ +++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899998555554441 234556666544345555543 34579999999 77876544 467799999
Q ss_pred ecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC---CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 260 NVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE---TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
|++ ++.+..+.. ..+..+.|+ |+|++|++++. .|.|.+||+++.+.+...+ | ..++.++|+|
T Consensus 89 d~~-~~~i~~~~~--~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVK-GKKIFSFGT--QPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---------H-SDATDVEWSP 153 (194)
T ss_pred cCc-ccEeEeecC--CCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---------c-CcEEEEEEcC
Confidence 996 667777753 344556655 99999998864 4679999999888876542 2 3478999999
Q ss_pred cCCCceEEEEeCC------CCcEEEEEecccCCC
Q 017773 337 VGEDECTLVAGGS------DGLLHVFVGKKKPLS 364 (366)
Q Consensus 337 ~~~~~~~l~s~~~------dg~i~iw~~~~~~l~ 364 (366)
||++|+++.. |+.++||+..++.+.
T Consensus 154 ---dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 154 ---DGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred ---CCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 9999998864 788999999876553
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.6e-13 Score=121.19 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=139.2
Q ss_pred cCCceeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc--EEEe
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDY---DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT--MQMW 170 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~--v~~~ 170 (366)
|...+.+.+|+|+ |+.|+..+. +..|.+||+.+++.. .+....+ .+....|+|+|+.++++.+.++. |++|
T Consensus 200 ~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 200 GSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred CCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEE
Confidence 3457999999999 888877653 468999999887653 3333443 67789999999998677776665 6777
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 247 (366)
|+. +++. ..+. .+........|+|+|..++++...+| .|+++|+... ....+..+...+....|+ +++.+
T Consensus 276 d~~--~~~~-~~Lt--~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 276 DLR--SGTT-TRLT--DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS--NPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred ECC--CCce-EEcc--CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--CeEEeecCCCcccCeEECCCCCEE
Confidence 877 4443 3333 23345677899999944444443443 6888887764 334444445556778899 88888
Q ss_pred EEEeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC------CeEEEEEeecCceEEEEeccc
Q 017773 248 VTAGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET------NQVFVYDVRWGEPVWVHDFEP 318 (366)
Q Consensus 248 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 318 (366)
+....+ ..|.+||+..+. ...+.. ...+....|+ |||+.|+..+.+ ..|.++|+..++.. .+.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~--- 420 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP--- 420 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc---
Confidence 776643 358888875543 233332 2233344554 999988765432 35777787655442 221
Q ss_pred ccccCCCCceeeEEEeec
Q 017773 319 VTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~ 336 (366)
..+.+...+|+|
T Consensus 421 ------~~~~~~~p~Wsp 432 (435)
T PRK05137 421 ------TPGDASDPAWSP 432 (435)
T ss_pred ------CCCCccCcccCC
Confidence 123466778877
No 233
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.65 E-value=3.9e-14 Score=112.22 Aligned_cols=243 Identities=16% Similarity=0.244 Sum_probs=173.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++...-|..+-+.+.+.|.++|||--.+..+-. ....| .-+.+++++.+.++ ...|+.|-.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w---psI~~--------~mP~~~~~~~y~~e--~~~L~vg~~ 88 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW---PSIYH--------YMPSPCSAMEYVSE--SRRLYVGQD 88 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccC---chhhh--------hCCCCceEeeeecc--ceEEEEEEe
Confidence 488889999999988889999999999999654422211 11111 12467999999998 999999999
Q ss_pred CCcEEEEeCC----CCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 120 DGVVMEYDLE----KKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 120 dg~i~iw~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
+|++.-+.+. +....+....|.. +|..+-|+.....+ ++.+.|..+.---.+ .+..+..+.... ..+++
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~-~v~~~if~~~~e~V-~s~~~dk~~~~hc~e--~~~~lg~Y~~~~---~~t~~ 161 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQA-RVSAIVFSLTHEWV-LSTGKDKQFAWHCTE--SGNRLGGYNFET---PASAL 161 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhc-ceeeEEecCCceeE-EEeccccceEEEeec--cCCcccceEeec---cCCCC
Confidence 9999988664 3445566667776 89999998776666 777777666543333 333222221111 11111
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCC-CCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeec
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRK-MVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKG 272 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~ 272 (366)
.+.- .+...|...|.|.+..+.. ...++.++.+|.+.+++++|. ....|++|..|..+.+||+--. ....++.+
T Consensus 162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 1111 1445565666666554432 225788899999999999998 7788999999999999999754 34557788
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
|...+..++.. +--+.+++++.||.|.+|+.+.
T Consensus 239 h~~kV~~l~~~--~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 239 HNDKVQALSYA--QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred chhhhhhhhhh--hhheeeeeccCCCeEEEEeccc
Confidence 88888888776 7788999999999999999864
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=2e-15 Score=130.77 Aligned_cols=303 Identities=18% Similarity=0.252 Sum_probs=208.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-.+.+.++..+|.|+-+|.++.-| +.+-|+...-... ....|.. +-.|-.+.|+|.....+-++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp---r~l~h~t--------pw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP---RWLHHIT--------PWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCc---eeeeccC--------cchhcceecccCCCCceeEEecCc
Confidence 466789999999999999999877 5666776644333 2222222 234778899887545666666666
Q ss_pred CcEEEEeCCCC---ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 121 GVVMEYDLEKK---VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
..-.+|++... .....+.+|.. .|+.+.|+|+.+-++++++.|-.+..||++.+ ..++.... .-......++|
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsr-aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-~~p~ys~~--~w~s~asqVkw 166 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSR-AITDINFNPQHPDVLATCSVDTYVHAWDMRSP-HRPFYSTS--SWRSAASQVKW 166 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCcc-ceeccccCCCCCcceeeccccccceeeeccCC-Ccceeeee--cccccCceeee
Confidence 66778998643 34455667766 99999999999999999999999999999942 33444433 23336678899
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCc--eeeeeecc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSR--VIRTYKGH 273 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~ 273 (366)
+...+..+| .+..+.|++||++.+..++..+++|...++.++|. ....+.+++.|++|+.||..+.. .-++.. .
T Consensus 167 nyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t 244 (1081)
T KOG0309|consen 167 NYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-T 244 (1081)
T ss_pred cccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-c
Confidence 987755554 45778899999999989999999999999999997 55678999999999999987642 222222 2
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE--ecccccccCCCCceeeEEEeeccCC-------CceEE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH--DFEPVTAAGSERGFVSSVCWRRVGE-------DECTL 344 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~l 344 (366)
..++..-.+.+--+|.++.-.-.+..+.+++.++....+.. ...++..+.||...|....|-.... ..-.|
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 33444334442224444443333346666665543322111 1223444588999998888864221 23479
Q ss_pred EEeCCCCcEEEEEeccc
Q 017773 345 VAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 345 ~s~~~dg~i~iw~~~~~ 361 (366)
++-+.|..+++|-+...
T Consensus 325 VTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EEeecCCceEeeeccHH
Confidence 99999999999988653
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.4e-13 Score=120.97 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=132.6
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
..|.++|... .....+..+.. .+.+.+|+|+++.++++...+ ..|.+||+. +++....... .......+|+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~--~g~~~~l~~~---~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLA--TGRRRVVANF---KGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCC-CCceEeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECC--CCCEEEeecC---CCCccceEEC
Confidence 4677777743 33333444444 789999999999884444333 359999998 5554433222 2356688999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CCcEEEEec--CCCceeeeeeccc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DGCLKLWNV--NDSRVIRTYKGHV 274 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~ 274 (366)
|+|..++++.+.++...+|.++........+..+........|+ +++.|+..+. ++...+|.+ .+++. ..+....
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g 327 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTG 327 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCC
Confidence 99955555677788766665432223445555555556678899 8888776554 466666655 34432 2222222
Q ss_pred ceeeeEEEEEecCCCeEEEecCCC---eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETN---QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
...... .++|+|++|+..+.++ .|.+||+.+++..... . ........|+| ||+.|+.++.++
T Consensus 328 ~~~~~~--~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--------~--~~~~~~p~~sp---dg~~l~~~~~~~ 392 (427)
T PRK02889 328 SYNTSP--RISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT--------D--TTRDESPSFAP---NGRYILYATQQG 392 (427)
T ss_pred CCcCce--EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc--------C--CCCccCceECC---CCCEEEEEEecC
Confidence 122223 4559999998766544 6999999887654321 1 12245789999 888887776544
Q ss_pred -c--EEEEEec
Q 017773 352 -L--LHVFVGK 359 (366)
Q Consensus 352 -~--i~iw~~~ 359 (366)
. +.+.++.
T Consensus 393 g~~~l~~~~~~ 403 (427)
T PRK02889 393 GRSVLAAVSSD 403 (427)
T ss_pred CCEEEEEEECC
Confidence 2 4444443
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=5.2e-14 Score=109.10 Aligned_cols=160 Identities=19% Similarity=0.324 Sum_probs=113.1
Q ss_pred eeEEeccCCCceEEEecC---------CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEE-EecCCeEE
Q 017773 146 WSVDYSKGDPVLGASGSD---------DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA-GCADKKAY 215 (366)
Q Consensus 146 ~~i~~~~~~~~l~~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~ 215 (366)
..+.|++.|.+|++.... -+...+|.++. .......+... ..++|.+++|+|+|..++++ |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-KNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-CCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 367889999888666552 13455666642 23445555443 23479999999999544333 44678999
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
+||++. +.+..+. ...++.+.|+ +|+++++++.+ |.|.+||.++.+.+.+.... .+..++|+ |+|++|
T Consensus 87 lyd~~~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~Ws--PdGr~~ 158 (194)
T PF08662_consen 87 LYDVKG--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWS--PDGRYL 158 (194)
T ss_pred EEcCcc--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEc--CCCCEE
Confidence 999973 4556553 5678899999 99999998754 56999999998888777633 33445554 999999
Q ss_pred EEecC------CCeEEEEEeecCceEEEEec
Q 017773 292 GCGSE------TNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 292 ~~~~~------dg~i~iwd~~~~~~~~~~~~ 316 (366)
+++.. |+.++||+.. |+.+....+
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~~ 188 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQ-GRLLYKKPF 188 (194)
T ss_pred EEEEeccceeccccEEEEEec-CeEeEecch
Confidence 98864 7889999985 777665543
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.5e-14 Score=117.46 Aligned_cols=245 Identities=16% Similarity=0.215 Sum_probs=169.9
Q ss_pred ecCCceeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCceeEeeecCCCCceee-EEeccCCCceEEEecCCCcEEEeeC
Q 017773 95 CTPAKLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS-VDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
.++...+.|..+|| |+++ ++|...-.|++||+..-... +..|....+.. .-.+.|-... +--..|.+|.+..-
T Consensus 49 e~p~ast~ik~s~D--GqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~-v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPD--GQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKS-VFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCC--CcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhh-eEeecCceeeehhh
Confidence 56678899999999 8765 67778899999999765433 33444333333 3333333333 44456777776553
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
. .....+..+. .-..++++.-...++ .++....|+-+++..+ ..+..+....+.++++..+ -..+|++|+
T Consensus 124 ~----G~hy~~RIP~---~GRDm~y~~~scDly-~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 124 Y----GRHYRTRIPK---FGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred c----CeeeeeecCc---CCccccccCCCccEE-EeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecc
Confidence 2 2222222222 445677765543444 4445677999999988 6777787777899999998 677888999
Q ss_pred CCCcEEEEecCCCceeeeeecc------cc-----eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccc
Q 017773 252 TDGCLKLWNVNDSRVIRTYKGH------VN-----NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
.+|.|.+||.++...+.++... .+ .|+.+.|. .+|-.+++|..+|.+.|||+++.+++..-.
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~--d~gL~~aVGts~G~v~iyDLRa~~pl~~kd----- 267 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR--DDGLHVAVGTSTGSVLIYDLRASKPLLVKD----- 267 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec--CCceeEEeeccCCcEEEEEcccCCceeecc-----
Confidence 9999999999988776666532 22 25555554 789999999999999999999999987654
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCCC
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPLS 364 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l~ 364 (366)
.+..-+|..+.|.+.. ++..|++. ....++|||-.+++..
T Consensus 268 --h~~e~pi~~l~~~~~~-~q~~v~S~-Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 268 --HGYELPIKKLDWQDTD-QQNKVVSM-DKRILKIWDECTGKPM 307 (703)
T ss_pred --cCCccceeeecccccC-CCceEEec-chHHhhhcccccCCce
Confidence 2345689999998752 34566665 4678999998776543
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.63 E-value=2.7e-13 Score=105.31 Aligned_cols=278 Identities=11% Similarity=0.086 Sum_probs=184.1
Q ss_pred cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC-CCc-EEEEEcCCCcEEEEeCCCCceeEeeec
Q 017773 62 IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT-SGR-VLGSGDYDGVVMEYDLEKKVPIFERDE 139 (366)
Q Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~ 139 (366)
..|.+.+|++.+.+... ...+.... .+.+..|.|.-.. +|. .++-+-.+|.|.++..........+.+
T Consensus 44 R~Gkl~Lys~~d~~~~~-l~~~q~~d---------ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ 113 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP-LDTLQCTD---------TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG 113 (339)
T ss_pred eccceEEEeecccccCc-cceeeeec---------ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc
Confidence 34678899988765543 11111111 2457888887431 244 566677789999998776554444433
Q ss_pred CCCC-----ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 140 HGGR-----RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 140 ~~~~-----~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
-... ...++.|++.+..+ +++..+|.+.+-+.. ............|...+...+|+...++++.+|+.|+.+
T Consensus 114 ls~~ki~~~~~lslD~~~~~~~i-~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 114 LSSKKISVVEALSLDISTSGTKI-FVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred cchhhhhheeeeEEEeeccCceE-EEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 2211 24567888888887 888889999866655 333333223347888999999998888999999999999
Q ss_pred EEEecCCCCCCeeE-eecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCC-CceeeeeecccceeeeEEEEEecCCCe
Q 017773 215 YAYDVRKMVDPVLV-FDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVND-SRVIRTYKGHVNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 215 ~i~d~~~~~~~~~~-~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (366)
..||+|.+.+.+.. .+.|...|.++.-+ .+.++++|+.|..|++||.++ ++++..-.. .+.|+.+...+.-.+.+
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRL 269 (339)
T ss_pred EEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHH
Confidence 99999955333333 55688899999887 677999999999999999994 567655443 35777777774334555
Q ss_pred EEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC-CCCcEE-EEEecc
Q 017773 291 LGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG-SDGLLH-VFVGKK 360 (366)
Q Consensus 291 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~dg~i~-iw~~~~ 360 (366)
|+++-.+| .+|-+...+....... ......|.+-...-.|.. ....|||++ .|..++ +|-.-+
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~---~~s~~~hdSl~YG~DWd~---~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIV---LPSDKIHDSLCYGGDWDS---KDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHHHhcC-ceEEEecccccchhee---eeccccccceeecccccc---ccceeeeeeccccceeeeeeecc
Confidence 66655554 6777776543321111 122356777777777854 334788865 477755 785433
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.7e-12 Score=108.29 Aligned_cols=276 Identities=14% Similarity=0.169 Sum_probs=177.0
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE----
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG---- 117 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---- 117 (366)
..+.+..+++++|+++|.+. +..++|++........ +... ..++++.|+|. +.+|.+=
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~l---t~~~------------~~~~~L~fSP~--g~yL~T~e~~~ 95 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVL---CVEL------------KKTYDLLFSPK--GNYLLTWEPWA 95 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEE---Eecc------------ceeeeeeeccc--ccccccccccc
Confidence 44578899999999999875 6789999988765211 2111 14899999999 8888762
Q ss_pred -cC-----CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC
Q 017773 118 -DY-----DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA 191 (366)
Q Consensus 118 -~~-----dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~ 191 (366)
.. .-.+.+|+.+++.....+..... .-++..|+.+.... +=-..+.+++|++.. .......+ |...
T Consensus 96 i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q-~~W~~qfs~dEsl~--arlv~nev~f~~~~~-f~~~~~kl----~~~~ 167 (566)
T KOG2315|consen 96 IYGPKNASNPNVLVYNVETGVQRSQIQKKMQ-NGWVPQFSIDESLA--ARLVSNEVQFYDLGS-FKTIQHKL----SVSG 167 (566)
T ss_pred cccCCCCCCCceeeeeeccceehhheehhhh-cCcccccccchhhh--hhhhcceEEEEecCC-ccceeeee----eccc
Confidence 11 24578999999666555555443 33788888876543 222345688888772 11111222 2224
Q ss_pred eEEEEEcCCCC-cEEEE-----EecCCeEEEE------------------------------------------------
Q 017773 192 VCCVEFHPFGS-SLVAA-----GCADKKAYAY------------------------------------------------ 217 (366)
Q Consensus 192 i~~~~~~~~~~-~~l~~-----~~~d~~i~i~------------------------------------------------ 217 (366)
+..+.++|... ..+|+ ++.-+.|+||
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 55555555421 22222 1222334444
Q ss_pred ---------ecCCCCCCeeEeecccCcEEEEEEc-CCCEEE--EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEe
Q 017773 218 ---------DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV--TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVW 285 (366)
Q Consensus 218 ---------d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
++... .....+ ...++|.++.|+ ++..|+ .|-.-..+.|||++ +.++..+.. ++-+.+-|+
T Consensus 248 YGEq~Lyll~t~g~-s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--gpRN~~~fn-- 320 (566)
T KOG2315|consen 248 YGEQTLYLLATQGE-SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--GPRNTAFFN-- 320 (566)
T ss_pred cccceEEEEEecCc-eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--CCccceEEC--
Confidence 33311 111111 236899999999 776654 45567789999975 566666643 343455555
Q ss_pred cCCCeEEEecC---CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC------CCcEEEE
Q 017773 286 RHGGLLGCGSE---TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS------DGLLHVF 356 (366)
Q Consensus 286 ~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~------dg~i~iw 356 (366)
|.|++++.++. -|.+.|||+.+.+.+..+.. ..-+-+.|+| ||++++++.. |+.++||
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----------~~tt~~eW~P---dGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----------ANTTVFEWSP---DGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhcccccc----------CCceEEEEcC---CCcEEEEEeccccEEecCCeEEE
Confidence 99999988775 47899999999888876642 2356689999 9999998864 6889999
Q ss_pred EecccCC
Q 017773 357 VGKKKPL 363 (366)
Q Consensus 357 ~~~~~~l 363 (366)
+..+..+
T Consensus 388 hytG~~l 394 (566)
T KOG2315|consen 388 HYTGSLL 394 (566)
T ss_pred EecCcee
Confidence 9887654
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=4.9e-11 Score=101.97 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=175.0
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeec----CCeEEEEEceecc-cccceeeeecCcee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGI----ARKIRIYNIKSVL-VDHPVVAVVDHSKV 89 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~----dg~i~iw~~~~~~-~~~~~~~~~~~~~~ 89 (366)
.+.+..+.++.+++.+...... .-......++++|++++|.+... +|.|..|.+.... .+........
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~---~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTV---AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEE---EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE----
T ss_pred CCcEEEEEEcCCCCCceEeeee---cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc----
Confidence 3456666676677776543321 13455677899999999988876 4689999987642 2111111111
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCC-CceeEe---ee---------cCCCCceeeEEeccCCC
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEK-KVPIFE---RD---------EHGGRRVWSVDYSKGDP 155 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~~~~---~~---------~~~~~~v~~i~~~~~~~ 155 (366)
.......++++|+ +++|+++. .+|.|.++++.. +..... +. ........++.++|+++
T Consensus 85 ------~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 85 ------GGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp ------SSSCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred ------CCCCcEEEEEecC--CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 1224567899998 88888876 489999999987 332221 11 11223678999999999
Q ss_pred ceEEEecCCCcEEEeeCCCCCCce--eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEee
Q 017773 156 VLGASGSDDGTMQMWDPRCDGGKC--VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFD 230 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~ 230 (366)
+++++.-....|.+|++....++. ...+.. ......+.++|+|++..++++...++.|.++++...... +....
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 997766666789999998433223 223332 233478999999999666666777899999999832111 11221
Q ss_pred c------ccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecCC--C--ceeeeeecccceeeeEEEEEecCCCeEEEec-CC
Q 017773 231 G------HRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVND--S--RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS-ET 297 (366)
Q Consensus 231 ~------~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d 297 (366)
. .......++++ ++++|+++. ..+.|.+|++.. + +.+..+.......+.+.++ |+|++|+++. .+
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s--~~g~~l~Va~~~s 313 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS--PDGRYLYVANQDS 313 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE---TTSSEEEEEETTT
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe--CCCCEEEEEecCC
Confidence 1 11257788999 888876655 567899999932 3 3333443322223455555 9999998776 56
Q ss_pred CeEEEEEee--cCceEE
Q 017773 298 NQVFVYDVR--WGEPVW 312 (366)
Q Consensus 298 g~i~iwd~~--~~~~~~ 312 (366)
+.|.+|+++ +|....
T Consensus 314 ~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 314 NTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TEEEEEEEETTTTEEEE
T ss_pred CeEEEEEEeCCCCcEEE
Confidence 789999885 555443
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.2e-13 Score=120.21 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=138.3
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC--CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD--DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
..|.+||...... ..+..+.. .+.+..|+|+++.++++... +..|++||+. .++...... ......+.+|+
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~--~g~~~~l~~---~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLA--TGQRELVAS---FRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECC--CCCEEEecc---CCCCccCceEC
Confidence 4688999865443 33444444 79999999999988444332 3469999998 554433222 22245578999
Q ss_pred CCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CCc--EEEEecCCCceeeeeec
Q 017773 199 PFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DGC--LKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~ 272 (366)
|+|+.++++.+.+| .|++||+.++ ....+..+.......+|+ +++.|+..+. +|. |.++|+.+++.. .+..
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~ 333 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF 333 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec
Confidence 99965656666665 5999999876 344555555556678999 8888876663 444 666677666532 3322
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCC---eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETN---QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
+.......+ ++|+|++++..+.++ .|.+||+.+++.. .+. +........|+| ||++|+..+.
T Consensus 334 ~g~~~~~~~--~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---------~~~~~~~p~~sp---dG~~i~~~s~ 398 (433)
T PRK04922 334 QGNYNARAS--VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---------PGSLDESPSFAP---NGSMVLYATR 398 (433)
T ss_pred CCCCccCEE--ECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---------CCCCCCCceECC---CCCEEEEEEe
Confidence 222222344 459999988764332 6999999887654 221 112344678999 8888776655
Q ss_pred C---CcEEEEEeccc
Q 017773 350 D---GLLHVFVGKKK 361 (366)
Q Consensus 350 d---g~i~iw~~~~~ 361 (366)
+ +.|.+++++++
T Consensus 399 ~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 399 EGGRGVLAAVSTDGR 413 (433)
T ss_pred cCCceEEEEEECCCC
Confidence 3 45777777653
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.7e-13 Score=117.28 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=141.2
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec--CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS--DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
..|.++|.+... ...+..+.. .+.+.+|+|+|+.++++.. .+..|.+||+. +++... +. .....+...+|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~--~g~~~~-l~--~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLE--TGQREL-VG--NFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECC--CCcEEE-ee--cCCCcccCcEEC
Confidence 478888886544 344555555 8999999999998844432 24689999998 554432 22 233467788999
Q ss_pred CCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CC--cEEEEecCCCceeeeeec
Q 017773 199 PFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DG--CLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~ 272 (366)
|+|..++++.+.++. |++||+.++ ....+..+........|+ +++.++..+. +| .|.++|+..++. ..+..
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~ 331 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISF 331 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeec
Confidence 999655566666655 777788775 445566566666778999 8888876663 33 588888776544 34433
Q ss_pred ccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
+........|+ |+|+.|+....+ ..|.+||+..+.. ..+. . ...+....|+| ||+.|+..+.
T Consensus 332 ~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-------~--~~~~~~p~~sp---DG~~i~~~~~ 396 (435)
T PRK05137 332 GGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-------S--GFLVEGPTWAP---NGRVIMFFRQ 396 (435)
T ss_pred CCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-------C--CCCCCCCeECC---CCCEEEEEEc
Confidence 33333344444 999999876543 3688888765443 2221 1 12367889999 8888776544
Q ss_pred C------CcEEEEEecccC
Q 017773 350 D------GLLHVFVGKKKP 362 (366)
Q Consensus 350 d------g~i~iw~~~~~~ 362 (366)
+ ..|+++++.++.
T Consensus 397 ~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCCCCCcceEEEEECCCCc
Confidence 2 257777776543
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.9e-11 Score=103.41 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=155.8
Q ss_pred ceeEEEEecCCCCcEEEEEcC----CCcEEEEeCCCC--c--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 99 KLSSLKWKPGTSGRVLGSGDY----DGVVMEYDLEKK--V--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
....++++|+ +++|++... ++.|..|++... + .+...... +.....++++|++++++++...+|.|.++
T Consensus 38 ~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 38 NPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 4677899998 888888765 578999988764 2 23333322 22567899999999997777789999999
Q ss_pred eCCCCCCceeEe---ecC--------CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE---ee-cccCc
Q 017773 171 DPRCDGGKCVST---VQP--------SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV---FD-GHRKT 235 (366)
Q Consensus 171 d~~~~~~~~~~~---~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~-~~~~~ 235 (366)
++... +..... +.. ........++.++|+++.++++.-....|++|++......+.. +. .....
T Consensus 115 ~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 115 PLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 99832 333222 210 1123467899999999545555545678999999876322221 21 23355
Q ss_pred EEEEEEc-CCCEEEE-EeCCCcEEEEecC--CC--ceeeeeecc----cceeeeEEEEEecCCCeEEEec-CCCeEEEEE
Q 017773 236 VTYIRFL-DVDTLVT-AGTDGCLKLWNVN--DS--RVIRTYKGH----VNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYD 304 (366)
Q Consensus 236 v~~~~~~-~~~~l~~-~~~d~~i~iwd~~--~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd 304 (366)
...+.|+ ++++++. .-.++.|.++++. ++ +.+..+... ........+.++|||++|+++. ..+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 6889999 8777654 4567889999988 33 222222211 1111233444459999988765 467899999
Q ss_pred ee--cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC-CCCcEEEEEec
Q 017773 305 VR--WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG-SDGLLHVFVGK 359 (366)
Q Consensus 305 ~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 359 (366)
++ +++....-.... .....+.++++| +|++|+++. .++.|.+|+++
T Consensus 274 ~d~~~g~l~~~~~~~~------~G~~Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPT------GGKFPRHFAFSP---DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTTTEEEEEEEEE------SSSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCceEEEEEEeC------CCCCccEEEEeC---CCCEEEEEecCCCeEEEEEEe
Confidence 94 344332221111 123478999999 888888775 56789999875
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.4e-13 Score=123.79 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=182.3
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeec--CCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT--PAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
|-+++++.++-. +||++|. --.|.+||+..+........+. ....| .+.+... +.+++++.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~-------~~~~H~~e~~~~l~-------~~~~v~~~ 68 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSK-------ILEVHRGEGKVKLL-------SGKIVTCA 68 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhc-------ccccccccccceec-------cceEEEEE
Confidence 344555555544 5777664 4579999998876554222111 11112 0011111 33445544
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC--CeEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS--AVCCVE 196 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~ 196 (366)
.-+.+..=+... +....+.. .+....+...+..+ +.++.++.+.+||.. .+.....+......- ...-+.
T Consensus 69 ~~~~v~~~~~~~-~~~~~~s~----wi~g~~l~~e~k~i-~l~~~~ns~~i~d~~--~~~~~~~i~~~er~~l~~~~~~g 140 (967)
T KOG0974|consen 69 KSDEVYVKEASN-QIIERFSD----WIFGAKLFEENKKI-ALVTSRNSLLIRDSK--NSSVLSKIQSDERCTLYSSLIIG 140 (967)
T ss_pred eecceeecchhh-hhhhhccc----cccccchhhhcceE-EEEEcCceEEEEecc--cCceehhcCCCceEEEEeEEEEe
Confidence 333333222211 11111111 33334445555665 777788899999988 555554444221110 112233
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceee-eeeccc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIR-TYKGHV 274 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~ 274 (366)
.+++. -++++|+.-+.|.+|+......+. .+.+|.+.+..+.++ ++.++++.+.|.++|+|++.+.+... ..-+|.
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 45554 789999999999999998543333 688999999999999 99999999999999999999987766 677898
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCC-CceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE-RGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
..+..+.+. |+ .+++++.|-+.++|+.+ ++.+..+ .+| ...|+.++..+ +...++|++.||.+
T Consensus 219 aRvw~~~~~--~n--~i~t~gedctcrvW~~~-~~~l~~y--------~~h~g~~iw~~~~~~---~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 219 ARVWACCFL--PN--RIITVGEDCTCRVWGVN-GTQLEVY--------DEHSGKGIWKIAVPI---GVIIKVTGGNDSTL 282 (967)
T ss_pred ceeEEEEec--cc--eeEEeccceEEEEEecc-cceehhh--------hhhhhcceeEEEEcC---CceEEEeeccCcch
Confidence 888887776 66 99999999999999654 3333333 233 35699999998 66699999999999
Q ss_pred EEEEecccC
Q 017773 354 HVFVGKKKP 362 (366)
Q Consensus 354 ~iw~~~~~~ 362 (366)
++|++.+..
T Consensus 283 k~~~l~~r~ 291 (967)
T KOG0974|consen 283 KLWDLNGRG 291 (967)
T ss_pred hhhhhhccc
Confidence 999987643
No 245
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.5e-15 Score=123.24 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=195.9
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+|...|.+++--.+.+-+++++.|.+|++|.++...... +.....-.+..|..+|.++.|..+ .++++++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------~tsaCQfTY~aHkk~i~~igfL~~--lr~i~Sc 802 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------GTSACQFTYQAHKKPIHDIGFLAD--LRSIASC 802 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------ccceeeeEhhhccCcccceeeeec--cceeeec
Confidence 45699999999888888899999999999999997633221 111122235567789999999988 7777766
Q ss_pred cCCCcEEEEeCCCCceeEeee-cCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecC---CCCCCC
Q 017773 118 DYDGVVMEYDLEKKVPIFERD-EHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP---SASRSA 191 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~ 191 (366)
||.|.+||.--++++.... ....+.+..+...++ ...+++.++...+|+++|.+ ..+....++. .+....
T Consensus 803 --D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR--sce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR--SCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred --cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc--cccceeeEEeccCCCCchh
Confidence 8899999998776655322 111113444444443 34444445788999999999 5554444433 234457
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEE-EecCCCceeeee
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKL-WNVNDSRVIRTY 270 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~ 270 (366)
+.+++..|.| +.++++-.+|.|.+.|.|++ +.+...+...-....++-..++.++....|.++.+ |-..++....+.
T Consensus 879 ~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVADKG-NKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEeccCc-chhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 8999999998 89999999999999999998 56666665554444454445567888888999988 987777666666
Q ss_pred ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC
Q 017773 271 KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD 350 (366)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 350 (366)
+....+...+. .-|.-|++....+.+.+|.-. ++....-... ........+..++++--| -..-+..|.+.
T Consensus 957 kpppepahflq----svgpSLV~a~~Gn~lgVYad~-a~~ha~stit-KiR~d~f~G~lTala~LP---LN~afLaGne~ 1027 (1034)
T KOG4190|consen 957 KPPPEPAHFLQ----SVGPSLVTAQNGNILGVYADS-AELHAESTIT-KIRPDEFPGTLTALAPLP---LNCAFLAGNEH 1027 (1034)
T ss_pred CCCCcchhhhh----ccCceeEEeccCcEEEEEecc-hhhhhhhhhc-cccccccCCccceeeecc---ccchhhccCCC
Confidence 55444433332 235667777666777777421 1111000000 000012346678888888 55577888888
Q ss_pred CcEEE
Q 017773 351 GLLHV 355 (366)
Q Consensus 351 g~i~i 355 (366)
|.|.+
T Consensus 1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred Cceee
Confidence 88875
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=3.1e-12 Score=115.33 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=140.8
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceece
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
...+.......|++....++..........-....-+-++++.-++++|+.-+.|.+|+........
T Consensus 103 ~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~------------- 169 (967)
T KOG0974|consen 103 ALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI------------- 169 (967)
T ss_pred EEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-------------
Confidence 3445566677788877777766543211111222234456777799999999999999987221111
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE-eeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF-ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
.+.+|.+.|.++.|+.+ |.++++.+.|.++++|++++.+... ...+|.. +|+.++|.|+ .+ ++++.|-+.++|
T Consensus 170 ~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i-~t~gedctcrvW 243 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RI-ITVGEDCTCRVW 243 (967)
T ss_pred eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--ee-EEeccceEEEEE
Confidence 46778899999999999 9999999999999999999987766 6667777 9999999987 45 999999999999
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
+.. +..+..+..+ ....+..++..+.. ..+++++.|+.+++||+..
T Consensus 244 ~~~---~~~l~~y~~h-~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVN---GTQLEVYDEH-SGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ecc---cceehhhhhh-hhcceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence 876 4455555422 23478999999876 8999999999999999854
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=7.9e-13 Score=102.76 Aligned_cols=251 Identities=17% Similarity=0.163 Sum_probs=164.5
Q ss_pred CceEEEEECC---CCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 43 DSIGVIEFDP---SDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 43 ~~i~~~~~s~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
..+..+.|.. +|. .++-+..+|.|.++.............+..... ......++.|++. +..++++.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki-------~~~~~lslD~~~~--~~~i~vs~ 140 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI-------SVVEALSLDISTS--GTKIFVSD 140 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-------hheeeeEEEeecc--CceEEEEc
Confidence 3345555543 344 556666788888887665433321111111110 0112567889998 88899999
Q ss_pred CCCcEEEEeCCCCce--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 119 YDGVVMEYDLEKKVP--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
.+|.+.+-+...... ++..+.|.- +++-..|+...+.++++|++|+.+..||++.+ ++.+..- ...|...|.++.
T Consensus 141 s~G~~~~v~~t~~~le~vq~wk~He~-E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-~~~i~~n-~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 141 SRGSISGVYETEMVLEKVQTWKVHEF-EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-KTFIWHN-SKVHTSGVVSIY 217 (339)
T ss_pred CCCcEEEEecceeeeeecccccccce-eeeeeecccCCCceEEecCCCceEEEEEecCC-cceeeec-ceeeecceEEEe
Confidence 999999666655533 347788887 89999999988889999999999999999943 3333331 225777999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCC--c---eeee
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDS--R---VIRT 269 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~--~---~~~~ 269 (366)
-+|..+.++++|+.|..|++||.|+..+++..-. -.+.|..+.++ ....++.++.-+-.+|-++... + ....
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s 296 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPS 296 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeec
Confidence 9988778999999999999999998877776544 34789999987 2233444444444677776654 2 2333
Q ss_pred eecccceeeeEEEEEecCCCeEEEec-CCCeEE-EEEeecC
Q 017773 270 YKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVF-VYDVRWG 308 (366)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 308 (366)
.+.|.+-+..-.|. ....+|++++ .|+.++ +|-.-++
T Consensus 297 ~~~hdSl~YG~DWd--~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWD--SKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccceeeccccc--cccceeeeeeccccceeeeeeeccC
Confidence 44555443333332 3345677754 355544 6644443
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-12 Score=103.66 Aligned_cols=253 Identities=15% Similarity=0.231 Sum_probs=168.0
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-----eeEeeecCCC-----------CceeeEEeccCCC-ceEEEe
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-----PIFERDEHGG-----------RRVWSVDYSKGDP-VLGASG 161 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~-----------~~v~~i~~~~~~~-~l~~~~ 161 (366)
-|.++.|... |.+|++|..+|.|.++.-+... ....++.|.. ..|..+.|.++++ ..++..
T Consensus 27 iis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 27 IISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred ceeeEEeecc--cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4889999998 9999999999999999654332 1222333321 3688899988754 234667
Q ss_pred cCCCcEEEeeCCCCCCce------------------eEe--------------ecCCCCCCCeEEEEEcCCCCcEEEEEe
Q 017773 162 SDDGTMQMWDPRCDGGKC------------------VST--------------VQPSASRSAVCCVEFHPFGSSLVAAGC 209 (366)
Q Consensus 162 ~~dg~v~~~d~~~~~~~~------------------~~~--------------~~~~~~~~~i~~~~~~~~~~~~l~~~~ 209 (366)
+.|.+|++|.+.....+. +.. .-...|...|+++.++.++ ..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-
Confidence 789999999987322111 000 1122567789999999987 566665
Q ss_pred cCCeEEEEecCCCCCCeeE--eecc-----cCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCcee----eeee-----
Q 017773 210 ADKKAYAYDVRKMVDPVLV--FDGH-----RKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVI----RTYK----- 271 (366)
Q Consensus 210 ~d~~i~i~d~~~~~~~~~~--~~~~-----~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~----- 271 (366)
.|=.|.+|++.-..+.... ++++ ...|++..|+ ..+.|+.++..|+|++.|++...+. +.+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7889999998765333222 2333 3468888898 6778999999999999999954211 1111
Q ss_pred -------cccceeeeEEEEEecCCCeEEEecCCCeEEEEEe-ecCceEEEEeccccccc----CCCCce---eeEEEeec
Q 017773 272 -------GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV-RWGEPVWVHDFEPVTAA----GSERGF---VSSVCWRR 336 (366)
Q Consensus 272 -------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~----~~~~~~---v~~~~~~~ 336 (366)
.--..|..+.|+ ++|+++++-+. -+|++||+ ...+++..+........ ...... -..++|+-
T Consensus 263 ~~rsffseiIsSISDvKFs--~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFS--HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEc--cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 111234455555 99999998765 58999999 45666655543211000 001122 24678877
Q ss_pred cCCCceEEEEeCCCCcEEEEEeccc
Q 017773 337 VGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 337 ~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
++.+++||+....++++++..+
T Consensus 340 ---~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 ---NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ---CcceEecccccceEEEecCCCC
Confidence 7779999999999999996554
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.2e-12 Score=108.54 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=154.5
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCC--CCceeeEEec------c-------------CCCceEEEecCCCcEEE
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHG--GRRVWSVDYS------K-------------GDPVLGASGSDDGTMQM 169 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~v~~i~~~------~-------------~~~~l~~~~~~dg~v~~ 169 (366)
..++|....||.+++|+...++...++.... .+...+..|. | .+..+++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 7899999999999999999987766654321 1133333332 1 23445588889999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
|+.. .++....+....|.+.|.++.++.+- ..|.+++.|+.+..|+.... +.+......+..+.+++.+ ++..++
T Consensus 85 ys~~--~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 85 YSVA--GGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEec--CCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999 88999999888999999999999886 79999999999999999987 6788888888889999999 999999
Q ss_pred EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecC---CCeEEEe-cCCCeEEEEEeec
Q 017773 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRH---GGLLGCG-SETNQVFVYDVRW 307 (366)
Q Consensus 249 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~-~~dg~i~iwd~~~ 307 (366)
+++ +.|++||+++++.+.+|.+|.++++.++|...-+ |.++.++ ..+.-+.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 6899999999999999999999999999873312 5555544 4566788888765
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.1e-12 Score=106.19 Aligned_cols=281 Identities=16% Similarity=0.231 Sum_probs=182.3
Q ss_pred ccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeee
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYIC 95 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (366)
+......|+..+.......... .... .+..|++|..+.|- -..+.+.+|+..+.+... . .-
T Consensus 103 ~~pn~~v~~vet~~~~s~~q~k---~Q~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--~------------kl 163 (566)
T KOG2315|consen 103 SNPNVLVYNVETGVQRSQIQKK---MQNG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--H------------KL 163 (566)
T ss_pred CCCceeeeeeccceehhheehh---hhcC-cccccccchhhhhh-hhcceEEEEecCCcccee--e------------ee
Confidence 3455667777775444443322 2222 68899998864443 235689999988733221 0 11
Q ss_pred cCCceeEEEEecCCCCcEEEE-----EcCCCcEEEEeCCCCceeEe--eecCCCCceeeEEeccCCCceEEEecC--C--
Q 017773 96 TPAKLSSLKWKPGTSGRVLGS-----GDYDGVVMEYDLEKKVPIFE--RDEHGGRRVWSVDYSKGDPVLGASGSD--D-- 164 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~~--d-- 164 (366)
|...|+.+.++|.+....+|+ .+.-+.|++|.......-.. .+......=..+.|++-+.-||+.++. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 234689999999744455554 35567899998763221111 111111122367788777766544332 2
Q ss_pred -------CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEE-EecCCeEEEEecCCCCCCeeEeecccCcE
Q 017773 165 -------GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA-GCADKKAYAYDVRKMVDPVLVFDGHRKTV 236 (366)
Q Consensus 165 -------g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 236 (366)
.++++.++. ...+...+. ..++|.++.|+|++..+.++ |-.-..+.|||++. +++..+ ..++-
T Consensus 244 n~SYYGEq~Lyll~t~--g~s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpR 314 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQ--GESVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPR 314 (566)
T ss_pred CccccccceEEEEEec--CceEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCc
Confidence 357888877 455555554 34599999999998544433 55678899999987 465555 46778
Q ss_pred EEEEEc-CCCEEEEEeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC------CCeEEEEEee
Q 017773 237 TYIRFL-DVDTLVTAGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE------TNQVFVYDVR 306 (366)
Q Consensus 237 ~~~~~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 306 (366)
+++-|+ .|++++.+|.+ |.|-+||+.+.+++..+..... +...|+ |||.++++++. |+.++||+..
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~--PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWS--PDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEc--CCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999 89998888754 6899999999999888875432 344555 99999998875 6789999975
Q ss_pred cCceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 307 WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
|..+....++ .....+.|-|..
T Consensus 391 -G~~l~~~~f~---------sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 391 -GSLLHEKMFK---------SELLQVEWRPFN 412 (566)
T ss_pred -Cceeehhhhh---------HhHhheeeeecC
Confidence 6666554332 146777777643
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4.8e-12 Score=107.49 Aligned_cols=194 Identities=14% Similarity=0.211 Sum_probs=146.2
Q ss_pred CCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEe------cC------------CCCc
Q 017773 51 DPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWK------PG------------TSGR 112 (366)
Q Consensus 51 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~------------~~~~ 112 (366)
.|...|+|....||.+|||+....+..........- .+..++..|. |- .+-.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhc----------cCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 355679999999999999999887654422222111 1233444442 11 1245
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEeee-cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPIFERD-EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA 191 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~ 191 (366)
.++-|...|.|.+|+...++....+. +.+.++|.++.++.+-..+ .+++.|+.+..|+.. ....+.... ..+..
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ci-yS~~ad~~v~~~~~~--~~~~~~~~~--~~~~~ 146 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCI-YSVGADLKVVYILEK--EKVIIRIWK--EQKPL 146 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCce-EecCCceeEEEEecc--cceeeeeec--cCCCc
Confidence 78888999999999999999888776 3333499999998877776 999999999999998 677777766 44458
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-C-----CCEEEEE-eCCCcEEEEecCC
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D-----VDTLVTA-GTDGCLKLWNVND 263 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~-----~~~l~~~-~~d~~i~iwd~~~ 263 (366)
+.+++.+|+| .++++++ +.|.+||+++. +.+..+++|.++|+++.|- . |.+++++ ..+..+.+|-+..
T Consensus 147 ~~sl~is~D~-~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 147 VSSLCISPDG-KILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEcCCC-CEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999998 7888764 78999999998 7999999999999999996 4 5666554 4455677786654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=6.6e-12 Score=111.01 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=135.8
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
..|.++|...... ..+..+.. .+....|+|+++.++++...+ ..|++||+. +++...... ....+.+++|+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~--~g~~~~~~~---~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLA--TGQREKVAS---FPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECC--CCCEEEeec---CCCCccceEEC
Confidence 4688888764443 33444444 788999999999985544333 479999998 554433322 22356678999
Q ss_pred CCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CC--cEEEEecCCCceeeeeec
Q 017773 199 PFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DG--CLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~ 272 (366)
|+|..++++.+.++ .|++||+.++ ....+..+........|+ +++.|+..+. ++ .|.++|+.+++. ..+..
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~ 319 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTF 319 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeec
Confidence 99955555655554 5888898875 344444455555567888 8888776554 33 577888876654 33433
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCC---eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETN---QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
+........+ +|+|++++..+.++ .|.+||+.++....... ........|+| ||++|+..+.
T Consensus 320 ~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----------~~~~~~p~~sp---dg~~l~~~~~ 384 (417)
T TIGR02800 320 RGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----------TGLDESPSFAP---NGRMILYATT 384 (417)
T ss_pred CCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----------CCCCCCceECC---CCCEEEEEEe
Confidence 3333334444 49999998887765 78899988754432110 11234568999 8878877766
Q ss_pred CC---cEEEEEecc
Q 017773 350 DG---LLHVFVGKK 360 (366)
Q Consensus 350 dg---~i~iw~~~~ 360 (366)
++ .+++.+..+
T Consensus 385 ~~~~~~l~~~~~~g 398 (417)
T TIGR02800 385 RGGRGVLGLVSTDG 398 (417)
T ss_pred CCCcEEEEEEECCC
Confidence 54 355555544
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=130.86 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=160.1
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
+-..|.++.=+|. ..+.++|+.||.|++|....++.+..+.......|+.+.|+.+|+.+ ..+..||.+.+|...
T Consensus 2207 ~v~~v~r~~sHp~--~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~-~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS--DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKF-GIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred ccCceeeecCCCC--CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCce-eeeccCCceeecccC--
Confidence 3456777888887 88999999999999999999988888776555699999999999998 888899999999987
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe---cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC---ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
.++....+ .|......+.|-. ..+++++ .++.+.+||.......-..-..|.+.++++++. ..+.|++|+
T Consensus 2282 -pk~~~s~q--chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2282 -PKPYTSWQ--CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred -Ccceeccc--cCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 44444444 5666888888875 3555543 578999999865533333348899999999998 888999999
Q ss_pred CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 252 TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.+|.|++||++..+++++++. + ....++++|+..|.|+||++..-..+..+..+
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~-~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------L-DTREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------h-hhhheeeccCcccceEEEEccccchhhcCchh
Confidence 999999999999988887764 2 14678999999999999999887776665433
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=8.2e-13 Score=104.86 Aligned_cols=253 Identities=15% Similarity=0.101 Sum_probs=177.7
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEe-CCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYD-LEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
.+.||...++....-|. ..-+++.+.|.++++|- .+.++.-..+......+++++.+.+....| +.|-..|++.-+
T Consensus 19 ~~eG~~d~vn~~~l~~~--e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L-~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPK--EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL-YVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhheeccC--CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE-EEEEecceEEEE
Confidence 35566778888888888 77899999999999994 445554444444444489999999988877 899999999988
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEE
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 250 (366)
.+...-.+....-....|...+..+-|+-.. ..+++.+.|..+.---.+.+ +.+..+.- ..+.+++.+. -.+...|
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~-~~lg~Y~~-~~~~t~~~~d-~~~~fvG 171 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESG-NRLGGYNF-ETPASALQFD-ALYAFVG 171 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccC-CcccceEe-eccCCCCcee-eEEEEec
Confidence 8763222222222223677899999998765 78888888877654444443 22222110 1111222222 1144555
Q ss_pred eCCCcEEEEec--CCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 251 GTDGCLKLWNV--NDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 251 ~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
...|.|.+-.+ ....++.++.+|...+.+++|. |...+|.+|..|..+.+||+.-++-+.... .+|...
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd--~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~k 242 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD--PGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDK 242 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEc--CCCcEEEeccccCceEEEeccCCcceeeee-------ccchhh
Confidence 56666655444 3457888999999999888888 899999999999999999997554443221 678899
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
|..+...+ --+.|++++.||.|-+|+.+.+..
T Consensus 243 V~~l~~~~---~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 243 VQALSYAQ---HTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhh---hheeeeeccCCCeEEEEeccceee
Confidence 99998888 556999999999999999876543
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.2e-12 Score=110.22 Aligned_cols=216 Identities=16% Similarity=0.162 Sum_probs=131.0
Q ss_pred CCceeEEEEecCCCCcEEEEEcC-C--CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc--EEEee
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDY-D--GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT--MQMWD 171 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~--v~~~d 171 (366)
...+.+..|+|+ |+.|+..+. + ..|.+||+.+++..... ...+ ......|+|+++.++++.+.+|. |+++|
T Consensus 217 ~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 217 PEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVREKVT-SFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeEEec-CCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 346889999999 988876643 2 36888999887653322 2222 34578999999998677777775 77778
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
+. +++. ..+. .+.......+|+|+|..++++...++ .|+++|+.++ + ...+..........+|+ ++++++
T Consensus 293 l~--tg~~-~~lt--~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 293 IA--TKAL-TRIT--RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred CC--CCCe-EECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEEecCCCCCcCeeECCCCCEEE
Confidence 76 4443 3333 23335677899999955555554444 4666777665 2 33332222233456888 888887
Q ss_pred EEeC-CC--cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC-CC--eEEEEEeecCceEEEEeccccccc
Q 017773 249 TAGT-DG--CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE-TN--QVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 249 ~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
..+. ++ .|.++|+.+++.. .+.... ... ..+|+|+|+.|+..+. ++ .+.+++. +|.....+.
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~--~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~------- 433 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDE--SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP------- 433 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCCC-CCC--CceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc-------
Confidence 6654 34 4566787777543 333221 111 2235599998876544 33 3667776 454444332
Q ss_pred CCCCceeeEEEeec
Q 017773 323 GSERGFVSSVCWRR 336 (366)
Q Consensus 323 ~~~~~~v~~~~~~~ 336 (366)
.+.+.+...+|+|
T Consensus 434 -~~~g~~~~p~Wsp 446 (448)
T PRK04792 434 -AGQGEVKSPAWSP 446 (448)
T ss_pred -CCCCCcCCCccCC
Confidence 2345677888887
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=129.69 Aligned_cols=199 Identities=15% Similarity=0.285 Sum_probs=157.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|-..|.++.-+|...+.+||+.||.|++|....++......+.. ++.|+.+.|+.. |+.+..+..|
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g------------~s~vtr~~f~~q--Gnk~~i~d~d 2272 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG------------NSRVTRSRFNHQ--GNKFGIVDGD 2272 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC------------cchhhhhhhccc--CCceeeeccC
Confidence 56778999999999999999999999999987765544222111 246999999998 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec---CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS---DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
|.+.+|... .++....+.|.. ...++.|-. . ++++++ .++.+.+||.-.+....... ..|.+.++++++
T Consensus 2273 g~l~l~q~~-pk~~~s~qchnk-~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2273 GDLSLWQAS-PKPYTSWQCHNK-ALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAY 2344 (2439)
T ss_pred CceeecccC-CcceeccccCCc-cccceeeee--h-hhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEE
Confidence 999999986 667777788887 788888875 3 336654 47889999987443333332 367889999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 272 (366)
.|.. +++++|+.+|.|++||++.. +.++.+.. +....+|++++..|.++||++.....++++..
T Consensus 2345 ~P~~-qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2345 APKH-QLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cCcc-eEEEecCCcCcEEEeehHHH-HHHHHhhh---------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence 9997 89999999999999999986 55555543 33567899999999999999998888877764
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=1.1e-11 Score=109.71 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=128.1
Q ss_pred CceeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYD---GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDP 172 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~ 172 (366)
..+....|+|+ |++|+.+..+ ..|.+||+.+++..... .... .+.+++|+|+++.++++.+.++ .|++||+
T Consensus 190 ~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 190 EPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred CceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCC-CccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 45888899999 9988876543 47999999887654332 2333 5677999999998866666555 5888888
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
. ++.. ..+. .+........|+|+|..++++....+ .|+++|+.+. ....+..+........|+ ++++++.
T Consensus 266 ~--~~~~-~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 266 D--GKQL-TRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred C--CCCE-EECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecCCCCccCeEECCCCCEEEE
Confidence 7 4433 3332 22234456789999844444444344 5888888765 334444455566778898 8888888
Q ss_pred EeCCC---cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC---eEEEEEeecCceEE
Q 017773 250 AGTDG---CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN---QVFVYDVRWGEPVW 312 (366)
Q Consensus 250 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~ 312 (366)
++.++ .|.+||+.++.. ..+.... ...... ++|+++.|+..+.++ .+.+.+. +++...
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~--~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPS--FAPNGRMILYATTRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred EEccCCceEEEEEeCCCCCe-EEccCCC-CCCCce--ECCCCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence 88776 789999887543 2333221 122334 449999888776654 3444443 344333
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.2e-11 Score=107.54 Aligned_cols=294 Identities=13% Similarity=0.160 Sum_probs=195.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeec--CceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVD--HSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
......|++|+....|+|+|+.||.+++..+.+.........+.. .-...+.+.+|.+.|.-+.|+.. .+.|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccC
Confidence 466789999999999999999999999998876543322112111 12233457789999999999998 89999999
Q ss_pred CCCcEEEEeCCCCceeEee-ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFER-DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
.+|.|.+|=+-.+.-..+. ....++.|.+++|+.+|..+ .....||.|.+=.+. +..+.--...+. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvd---GNRIwgKeLkg~--~l~hv~w 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVD---GNRIWGKELKGQ--LLAHVLW 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeec---cceecchhcchh--eccceee
Confidence 9999999998877644333 22333479999999999998 777889998887766 333332222222 4557899
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCC------CeeE----eecccCcEEEEEEc---------CCCEEEEEeCCCcEEE
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVD------PVLV----FDGHRKTVTYIRFL---------DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~----~~~~~~~v~~~~~~---------~~~~l~~~~~d~~i~i 258 (366)
+++. ..++.+-.+|.+.+||....-. .... +......+..+.|. +...|+.+-..|.+.+
T Consensus 165 s~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred cccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9997 6777788899999999764311 1011 11122235566664 2347899999999888
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC---------eEEEEEeecCceEEEEecccccccCCCCcee
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN---------QVFVYDVRWGEPVWVHDFEPVTAAGSERGFV 329 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 329 (366)
..-.+......+... -. .+...|+++|.+|+.++.+. .|.+|.. -|+.+..++.+ ...|
T Consensus 244 MR~eND~~Pvv~dtg-m~--~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp--------g~~I 311 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG-MK--IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP--------GSCI 311 (1189)
T ss_pred hhhcCCCCCeEEecc-cE--eecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------Ccee
Confidence 755443222233221 23 34444559999999987642 4555543 25555555433 4679
Q ss_pred eEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 330 SSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++++|-. .|-.+|.+ .|+.|++=+++
T Consensus 312 t~lsWEg---~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 312 TGLSWEG---TGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred eeeEEcC---CceEEEEE-ecceEEEEeec
Confidence 9999976 55555544 46666655554
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=7.1e-10 Score=89.39 Aligned_cols=274 Identities=14% Similarity=0.164 Sum_probs=174.5
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC---CCcEEEEeCCC--CceeEee
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY---DGVVMEYDLEK--KVPIFER 137 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~ 137 (366)
+.-|++|++.+......... +....+..+-|+|+|+ ++.|.++.. +|.|..|.++. |+....-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~----------~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ----------LVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred CCceEEEEEeCcccccchhh----------hccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 35699999985433221111 1122356889999999 888888754 47787777764 4433221
Q ss_pred ec-CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC----------eEEEEEcCCCCcEEE
Q 017773 138 DE-HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA----------VCCVEFHPFGSSLVA 206 (366)
Q Consensus 138 ~~-~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~ 206 (366)
.. ..+.+-+.+++++++++++.+-...|.|.++-++.. +..........|.+. +....+.|++ ++++
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~ 160 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLV 160 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEE
Confidence 11 112245889999999999776677899999999732 433333222233333 8889999998 5665
Q ss_pred EEe-cCCeEEEEecCCCCCCee----EeecccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCCC-ceeeeeec------
Q 017773 207 AGC-ADKKAYAYDVRKMVDPVL----VFDGHRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVNDS-RVIRTYKG------ 272 (366)
Q Consensus 207 ~~~-~d~~i~i~d~~~~~~~~~----~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~-~~~~~~~~------ 272 (366)
+.. ..-.|.+|++..+ +... .+ .....-+.|.|+ ++++.... -.+++|.+|..... ..+..++.
T Consensus 161 v~DLG~Dri~~y~~~dg-~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 161 VPDLGTDRIFLYDLDDG-KLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EeecCCceEEEEEcccC-cccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 553 4457999999865 2211 12 233456889999 88876544 46899999998874 23333332
Q ss_pred -ccceeeeEEEEEecCCCeEEEecC-CCeEEEEEeecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 273 -HVNNRNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
-.+.....++..++||++|.++.. ...|.+|.+... ..+...... .-+....+...++| +|++|++++.
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-----~teg~~PR~F~i~~---~g~~Liaa~q 310 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT-----PTEGQFPRDFNINP---SGRFLIAANQ 310 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-----ccCCcCCccceeCC---CCCEEEEEcc
Confidence 223344556666699999998854 347888887632 323332221 22334478889998 8889998887
Q ss_pred C-CcEEEEEecc
Q 017773 350 D-GLLHVFVGKK 360 (366)
Q Consensus 350 d-g~i~iw~~~~ 360 (366)
| ..|.+|.++.
T Consensus 311 ~sd~i~vf~~d~ 322 (346)
T COG2706 311 KSDNITVFERDK 322 (346)
T ss_pred CCCcEEEEEEcC
Confidence 5 4699998765
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.2e-11 Score=106.78 Aligned_cols=216 Identities=15% Similarity=0.136 Sum_probs=132.7
Q ss_pred CCceeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEee
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYD---GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWD 171 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d 171 (366)
...+....|+|+ |+.|+..+.+ ..|.+||+.+++.... ....+ .+....|+|+|+.++++...+| .|+++|
T Consensus 198 ~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 198 REPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 346889999999 8888765533 4689999988765432 22222 4557899999999866666665 578889
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
+. +++.. .+. .+........|+|+|..++++...++ .|+++|+.++ + ...+...........|+ +++.++
T Consensus 274 ~~--~~~~~-~lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-~~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 274 LA--SRQLS-RVT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-AERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred CC--CCCeE-Ecc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccceEECCCCCEEE
Confidence 87 44433 333 23335567789999955555554444 5777787765 2 22222222233456788 888887
Q ss_pred EEeCC-C--cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEeccccccc
Q 017773 249 TAGTD-G--CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 249 ~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
..+.+ + .|.++|+.+++. ..+.. ....... +|+|+|+.++..+.+ ..|.++++. +.....+
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p--~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l-------- 413 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESP--SVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPL-------- 413 (430)
T ss_pred EEEccCCceEEEEEECCCCCE-EEccC-CCCCCCc--eECCCCCEEEEEEecCCceEEEEEECC-CCceEEC--------
Confidence 76643 3 588899988754 23322 1111223 455999998766543 346666664 3333222
Q ss_pred CCCCceeeEEEeec
Q 017773 323 GSERGFVSSVCWRR 336 (366)
Q Consensus 323 ~~~~~~v~~~~~~~ 336 (366)
..+.+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 12345577778887
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.7e-11 Score=105.72 Aligned_cols=214 Identities=15% Similarity=0.068 Sum_probs=132.0
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
.|.++|.+.+.. ..+..+.. .+....|+|+|+.++++...+ ..|.+||+. +++....... .......+|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~--~g~~~~l~~~---~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD--TGRREQITNF---EGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECC--CCCEEEccCC---CCCcCCeEECC
Confidence 477778875543 33444444 789999999999985555443 358889998 5544332222 22455789999
Q ss_pred CCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CC--cEEEEecCCCceeeeeecc
Q 017773 200 FGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DG--CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 200 ~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~ 273 (366)
+|..++++...+| .|+++|+.++ ....+..+........|+ +++.++..+. ++ .|.++|+.+++.. .+...
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~ 329 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV 329 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence 9955555555555 6888899875 344455555556677898 8887765553 33 5777787777643 22211
Q ss_pred cceeeeEEEEEecCCCeEEEecCC-C--eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSET-N--QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD 350 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 350 (366)
........ ++|+|+.|+..+.+ + .|.++|+.+++...... ........|+| ||+.++..+.+
T Consensus 330 ~~~~~~~~--~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~----------~~~~~~p~~sp---dg~~i~~~~~~ 394 (430)
T PRK00178 330 GNYNARPR--LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD----------TSLDESPSVAP---NGTMLIYATRQ 394 (430)
T ss_pred CCCccceE--ECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC----------CCCCCCceECC---CCCEEEEEEec
Confidence 11112234 45999998866543 3 58888988776532211 11122458999 88788766543
Q ss_pred -C--cEEEEEecc
Q 017773 351 -G--LLHVFVGKK 360 (366)
Q Consensus 351 -g--~i~iw~~~~ 360 (366)
| .|.++++++
T Consensus 395 ~g~~~l~~~~~~g 407 (430)
T PRK00178 395 QGRGVLMLVSING 407 (430)
T ss_pred CCceEEEEEECCC
Confidence 3 466666654
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=9.1e-10 Score=92.09 Aligned_cols=256 Identities=13% Similarity=0.071 Sum_probs=160.8
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC----------CCcEEEEeCCCCce
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY----------DGVVMEYDLEKKVP 133 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~ 133 (366)
++|.+.|..+.+... ...... .-..+ ++|+ ++.|+.+.. +..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~~~v~g---~i~~G~-----------~P~~~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLG---MTDGGF-----------LPNPV-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred ceEEEEECCCCEEEE---EEEccC-----------CCcee-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 789999988865544 221111 11224 8998 877776654 78999999999999
Q ss_pred eEeeecCCC------CceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEE
Q 017773 134 IFERDEHGG------RRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVA 206 (366)
Q Consensus 134 ~~~~~~~~~------~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 206 (366)
+.++....+ .....++++|+|+.++++--. +..|.+.|+. +++.+..+...+ ...-...++.. ++
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~--~~kvv~ei~vp~---~~~vy~t~e~~-~~-- 161 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE--GKAFVRMMDVPD---CYHIFPTANDT-FF-- 161 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC--CCcEEEEEeCCC---CcEEEEecCCc-cE--
Confidence 988875432 123478999999998545434 7899999999 888888887532 22222233222 22
Q ss_pred EEecCCeEEEEecCCCCCCe----eEeec-----ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-----ceeeeee
Q 017773 207 AGCADKKAYAYDVRKMVDPV----LVFDG-----HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-----RVIRTYK 271 (366)
Q Consensus 207 ~~~~d~~i~i~d~~~~~~~~----~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~ 271 (366)
+-+.||......+....+.. ..+.. ...+ .. +. ++.+++.... |.|.+.|+... +....+.
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~-~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AY-SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ce-EcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence 22245555444333322211 11111 0122 11 23 6777766665 99999996443 3333222
Q ss_pred c-------ccceeeeEEEEEecCCCeEEEec----------CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEe
Q 017773 272 G-------HVNNRNFVGLSVWRHGGLLGCGS----------ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCW 334 (366)
Q Consensus 272 ~-------~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 334 (366)
. .......++++ ++++.++... ..+.|.++|..+++.+..+.. ...+.++++
T Consensus 238 ~~~~~~~wrP~g~q~ia~~--~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~~~iav 306 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYH--RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEIDSINV 306 (352)
T ss_pred ccccccccCCCcceeEEEc--CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCceeeEEE
Confidence 1 11222335555 9999888742 225799999999999988764 246889999
Q ss_pred eccCCCce-EEEEeC-CCCcEEEEEecccC
Q 017773 335 RRVGEDEC-TLVAGG-SDGLLHVFVGKKKP 362 (366)
Q Consensus 335 ~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~ 362 (366)
+| |++ .|++.. .++.|.+.|..+.+
T Consensus 307 S~---Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 307 SQ---DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CC---CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 99 888 777655 68889999998754
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-10 Score=102.12 Aligned_cols=220 Identities=11% Similarity=0.053 Sum_probs=131.1
Q ss_pred ceeEEEEecCCCCcE--E-EEEcCC--CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC----cEEE
Q 017773 99 KLSSLKWKPGTSGRV--L-GSGDYD--GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG----TMQM 169 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~--l-~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg----~v~~ 169 (366)
.+.+-.|+|+ |+. + ++...+ ..|.+.++.+++...... ..+ .....+|+|||+.|+++...+| .+..
T Consensus 186 ~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g-~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 186 LSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG-NQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC-CccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4567799999 764 2 344443 457788888776443322 222 4556899999999866664433 3444
Q ss_pred eeCCCCC-CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 170 WDPRCDG-GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 170 ~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
|++.... ++...... .........+|+|+|..++++...+|. |+++++.........+..+...+....|+ +++
T Consensus 262 ~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 262 FSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred eecccCCCCcceEeec--CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 6765211 22222222 111234567999999545555545665 44445543222344455455567788999 898
Q ss_pred EEEEEeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC---CCeEEEEEeecCceEEEEecccc
Q 017773 246 TLVTAGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE---TNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 246 ~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
.|+..+.+ ..|.+||+.+++.. .+......+....|+ |||+.|+.... ...|.++|+..++......
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wS--pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---- 412 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWA--IDSLHLVYSAGNSNESELYLISLITKKTRKIVI---- 412 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeec----
Confidence 88766543 36999999888654 333222233444554 99998774332 3568888988776543321
Q ss_pred cccCCCCceeeEEEeec
Q 017773 320 TAAGSERGFVSSVCWRR 336 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~ 336 (366)
..+.+...+|+|
T Consensus 413 -----~~g~~~~p~Ws~ 424 (428)
T PRK01029 413 -----GSGEKRFPSWGA 424 (428)
T ss_pred -----CCCcccCceecC
Confidence 234566788887
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.7e-11 Score=104.94 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=129.4
Q ss_pred CCCceEEEEECCCCCEEEEeecC-C--eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE-
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIA-R--KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS- 116 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~- 116 (366)
+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +... .+.....+|+|+ |+.|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~----------~g~~~~~~wSPD--G~~La~~ 279 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSF----------PGINGAPRFSPD--GKKLALV 279 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCC----------CCCcCCeeECCC--CCEEEEE
Confidence 46678999999999988876543 3 57888887654311 1111 112346899999 887764
Q ss_pred EcCCCc--EEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc--EEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 117 GDYDGV--VMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT--MQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 117 ~~~dg~--i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
.+.+|. |.++|+++++... +..+.. .....+|+|+++.++++...++. |.++|+. +++.. .+...+. ..
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~~~-lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--~g~~~-~Lt~~g~--~~ 352 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKALTR-ITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--SGKVS-RLTFEGE--QN 352 (448)
T ss_pred EeCCCCeEEEEEECCCCCeEE-CccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC--CCCEE-EEecCCC--CC
Confidence 455664 7778888776433 333333 56778999999998676655555 5555665 44433 3322222 23
Q ss_pred EEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CCc--EEEEecCCCce
Q 017773 193 CCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DGC--LKLWNVNDSRV 266 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~--i~iwd~~~~~~ 266 (366)
...+|+|+|..++++...++ .|.++|+.++ + ...+.... ......|+ +++.++..+. ++. +.+++. ++..
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 45689999954445444444 4566777765 2 23333221 12234688 8887766554 333 667776 5555
Q ss_pred eeeeecccceeeeEEEE
Q 017773 267 IRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (366)
...+..+.+.+...+|+
T Consensus 429 ~~~l~~~~g~~~~p~Ws 445 (448)
T PRK04792 429 KARLPAGQGEVKSPAWS 445 (448)
T ss_pred eEECcCCCCCcCCCccC
Confidence 56665554444555554
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.8e-10 Score=96.38 Aligned_cols=309 Identities=13% Similarity=0.176 Sum_probs=192.4
Q ss_pred ceeeeeecCCCceeeecCCCCcc-------------CCCceEEEEECCCCCEEEEeec-----------CCeEEEEEcee
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAA-------------VSDSIGVIEFDPSDSVFATGGI-----------ARKIRIYNIKS 73 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~-------------h~~~i~~~~~s~~~~~l~t~~~-----------dg~i~iw~~~~ 73 (366)
.+.+.|+|.+.++++-...+... |++ |.-+.|||+.+||+|-+. ...++|||+.+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 35678999999988765544322 554 789999999999999652 14799999999
Q ss_pred cccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC
Q 017773 74 VLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG 153 (366)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~ 153 (366)
+............. ..-.-..|+.+ ++++|--.. ..|.||+..+-.++- .+.-.-..|....|+|.
T Consensus 292 G~lkrsF~~~~~~~----------~~WP~frWS~D--dKy~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPY----------LKWPIFRWSHD--DKYFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFSWSPT 357 (698)
T ss_pred cchhcceeccCCCc----------cccceEEeccC--CceeEEecc-ceEEEEecCceeeec-ccccCCccccCcccCCC
Confidence 88766333322211 11234679998 889887765 468999876633222 22222237889999998
Q ss_pred CCceEEEecC-----CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEE----------ecCCeEEEEe
Q 017773 154 DPVLGASGSD-----DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAG----------CADKKAYAYD 218 (366)
Q Consensus 154 ~~~l~~~~~~-----dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~d~~i~i~d 218 (366)
+..| |.-.. -..+.+..+. +.+.++..... .-.=..+.|-.+| .+|+.- +.-..+.|+.
T Consensus 358 ~~ll-AYwtpe~~~~parvtL~evP--s~~~iRt~nlf--nVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 358 SNLL-AYWTPETNNIPARVTLMEVP--SKREIRTKNLF--NVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred cceE-EEEcccccCCcceEEEEecC--ccceeeeccce--eeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEE
Confidence 7665 43222 1234555554 45555444322 1123456677777 455542 1122466777
Q ss_pred cCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC---CCcEEEEecCC----CceeeeeecccceeeeEEEEEecCCCe
Q 017773 219 VRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT---DGCLKLWNVND----SRVIRTYKGHVNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 219 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (366)
++...-++.... -...|...+|- .|+.|++-+. ..++.+|.+.+ .+++..+.. ...+.+.|+ |.|++
T Consensus 432 ireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfws--PkG~f 506 (698)
T KOG2314|consen 432 IREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWS--PKGRF 506 (698)
T ss_pred eeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEc--CCCcE
Confidence 777655555554 45678888887 6666655442 34688898873 244445543 233445555 99999
Q ss_pred EEEe---cCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC------CCcEEEEEeccc
Q 017773 291 LGCG---SETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS------DGLLHVFVGKKK 361 (366)
Q Consensus 291 l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~ 361 (366)
++.+ |..|.+.++|+........-. ..| ...+.+.|.| .|+++++++. |.--+||+..+.
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k~~~~-------~eh-~~at~veWDP---tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLKDTAS-------PEH-FAATEVEWDP---TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEEEecccccceEEEecchhhhhhccC-------ccc-cccccceECC---CCCEEEEeeehhhhccccceEEEEeecH
Confidence 8876 456889999987422221110 223 3467899999 8899999875 445678887765
Q ss_pred CC
Q 017773 362 PL 363 (366)
Q Consensus 362 ~l 363 (366)
.|
T Consensus 576 ll 577 (698)
T KOG2314|consen 576 LL 577 (698)
T ss_pred HH
Confidence 43
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=6.8e-10 Score=107.11 Aligned_cols=251 Identities=13% Similarity=0.114 Sum_probs=161.7
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeec-CC------------CCceeeEEeccCCCceEEEecCCCcE
Q 017773 101 SSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE-HG------------GRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~------------~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
..+++++. ++.++++-..++.|+++|.... .+..+.. .. -.....+++.+++..++++-...+.|
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 2667777778899999998644 3333322 10 01357899998887764555566789
Q ss_pred EEeeCCCCCCceeEeecCCCC---------------CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc
Q 017773 168 QMWDPRCDGGKCVSTVQPSAS---------------RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 232 (366)
+.+|+. ++ .+.++...+. -.....++++|++..++++...++.|++||..++ .+..+.+.
T Consensus 649 r~id~~--~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g--~v~~~~G~ 723 (1057)
T PLN02919 649 REIDFV--NE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG--VTRVFSGD 723 (1057)
T ss_pred EEEecC--CC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC--eEEEEecC
Confidence 999987 33 3433321100 1245689999955477788888899999998765 22222111
Q ss_pred ---------------cCcEEEEEEc-CCC-EEEEEeCCCcEEEEecCCCceeeeeec-------------cc--------
Q 017773 233 ---------------RKTVTYIRFL-DVD-TLVTAGTDGCLKLWNVNDSRVIRTYKG-------------HV-------- 274 (366)
Q Consensus 233 ---------------~~~v~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~-------- 274 (366)
-.....++++ +++ ++++-+.++.|++||+.++.......+ ..
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 1234568888 766 556666778999999987643211100 00
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccc-----cccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV-----TAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
.....++++ ++|.++++-..+++|++||..++........... ....+.-....++++++ +|+.+++-+.
T Consensus 804 ~~P~Gvavd--~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~---dG~lyVaDt~ 878 (1057)
T PLN02919 804 QHPLGVLCA--KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE---NGRLFVADTN 878 (1057)
T ss_pred cCCceeeEe--CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC---CCCEEEEECC
Confidence 011234444 9999999999999999999987765533321100 00122234578899999 8889999999
Q ss_pred CCcEEEEEecccCC
Q 017773 350 DGLLHVFVGKKKPL 363 (366)
Q Consensus 350 dg~i~iw~~~~~~l 363 (366)
++.|++|+++++.+
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999987654
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=1.5e-09 Score=94.58 Aligned_cols=289 Identities=13% Similarity=0.054 Sum_probs=169.2
Q ss_pred ccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeee
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYIC 95 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (366)
.+..+..++..+++++.....+.. .. .... .++..++.++.+|.+..+|..+++...... ..
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~-~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~---~~--------- 134 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDER-LS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK---LS--------- 134 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCC-cc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec---cC---------
Confidence 344555666655555543322110 01 1111 145677788889999999998877644111 00
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCce-----eeEEeccCCCceEEEecCCCcEEEe
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRV-----WSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
+.+.+.... . +..++.+..++.+..+|.++++.+........ .. .+.... +..+ +.+..++.+..+
T Consensus 135 --~~~~~~p~v-~--~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v-~~~~~~g~v~al 205 (377)
T TIGR03300 135 --SEVLSPPLV-A--NGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGV-LVGFAGGKLVAL 205 (377)
T ss_pred --ceeecCCEE-E--CCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEE-EEECCCCEEEEE
Confidence 111111111 1 44677777899999999999988776654332 11 111111 2344 778888999999
Q ss_pred eCCCCCCceeEeecCCCCC--CC------e-EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEE
Q 017773 171 DPRCDGGKCVSTVQPSASR--SA------V-CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRF 241 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~--~~------i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 241 (366)
|.+ +++.+......... .. + .+..+ .+ ..+++++.+|.++.+|.+++ +.+-.... . .......
T Consensus 206 d~~--tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG-~~~W~~~~-~-~~~~p~~ 277 (377)
T TIGR03300 206 DLQ--TGQPLWEQRVALPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSG-RVLWKRDA-S-SYQGPAV 277 (377)
T ss_pred Ecc--CCCEeeeeccccCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCC-cEEEeecc-C-CccCceE
Confidence 998 67665543321100 00 0 01111 13 46777778999999999887 44333321 1 1112222
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCceeeeeecccce-eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccc
Q 017773 242 LDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN-RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 242 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
.+..++.++.||.+..+|..+++.+.+....... ..... ..+..+++++.+|.|+++|..+++.+..+....
T Consensus 278 -~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~----i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-- 350 (377)
T TIGR03300 278 -DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA----VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG-- 350 (377)
T ss_pred -eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE----EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--
Confidence 4567888889999999999999877655321111 11111 246788899999999999999999998875421
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
.....+.++. ++ .|+.++.||.|+.|
T Consensus 351 -----~~~~~sp~~~----~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 351 -----SGIASPPVVV----GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred -----CccccCCEEE----CC-EEEEEeCCceEEEe
Confidence 1111222222 44 57788899988776
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.42 E-value=9.2e-12 Score=95.31 Aligned_cols=147 Identities=19% Similarity=0.253 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEec-----CCCcEEEeeCCCCCCceeEeec
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGS-----DDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
++.++++..||.+.+.+.+.-... ..+..-+. .-.+.++...+..+ .++. .-+..+.|+++ ..+....-.
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i-~s~~~g~~n~~d~~~a~~~~--p~~t~~~~~ 176 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSI-LSGGCGNWNAQDNFYANTLD--PIKTLIPSK 176 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEE-ecCCcceEeeccceeeeccc--ccccccccc
Confidence 678999999999999987652111 11111111 12223333334433 2221 12346667766 222222211
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecC
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~ 262 (366)
.....|.+++-+|..++++++|+.||.+-+||.|+...+...+..|+.++..+-|+ ++..|++++.||.+-.||..
T Consensus 177 --~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 177 --KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred --cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 12235999999998888999999999999999999877888899999999999998 88899999999999999976
Q ss_pred C
Q 017773 263 D 263 (366)
Q Consensus 263 ~ 263 (366)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 5
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.3e-08 Score=82.23 Aligned_cols=269 Identities=12% Similarity=0.138 Sum_probs=165.4
Q ss_pred cceeeeeecCC--CceeeecCCCCccCCCceEEEEECCCCCEEEEeecC---CeEEEEEceec--ccccceeeeecCcee
Q 017773 17 ERARCEWDFNL--RTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIA---RKIRIYNIKSV--LVDHPVVAVVDHSKV 89 (366)
Q Consensus 17 ~~~~~~w~~~~--~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~--~~~~~~~~~~~~~~~ 89 (366)
..-+..|+.++ +.+.. .....+.+.++-++|+|+++.|.++-.+ |.|..|.++.. .. ++..+..
T Consensus 15 s~gI~v~~ld~~~g~l~~---~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-----t~ln~~~- 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL---LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-----TFLNRQT- 85 (346)
T ss_pred CCceEEEEEeCcccccch---hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-----EEeeccc-
Confidence 34455666653 22211 1233467889999999999998888654 67888877752 22 1111111
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcC-CCcEEEEeCCC-CceeE--eeecCCC---------CceeeEEeccCCCc
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDY-DGVVMEYDLEK-KVPIF--ERDEHGG---------RRVWSVDYSKGDPV 156 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~-~~~~~--~~~~~~~---------~~v~~i~~~~~~~~ 156 (366)
.. ..+-..++++++ +++++++.. -|.|.++-++. |.... ....|.+ .-+....+.|++++
T Consensus 86 ---~~--g~~p~yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 86 ---LP--GSPPCYVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred ---cC--CCCCeEEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 11 123378999998 999998865 47899998865 32211 1112222 12888999999999
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeE--eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec---
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVS--TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--- 231 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--- 231 (366)
++++.-.--.|.+|++. .++... .... ......+-|.|+|+++...++.--+++|-+|........+..+..
T Consensus 159 l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 159 LVVPDLGTDRIFLYDLD--DGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred EEEeecCCceEEEEEcc--cCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 85554445579999998 443322 2222 233478899999999544555667899999998874223333221
Q ss_pred ------ccCcEEEEEEc-CCCEEEEEeC-CCcEEEEecCCC-ceee---eeecccceeeeEEEEEecCCCeEEEecCC-C
Q 017773 232 ------HRKTVTYIRFL-DVDTLVTAGT-DGCLKLWNVNDS-RVIR---TYKGHVNNRNFVGLSVWRHGGLLGCGSET-N 298 (366)
Q Consensus 232 ------~~~~v~~~~~~-~~~~l~~~~~-d~~i~iwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g 298 (366)
.......|..+ +|++|.++.. ...|.+|.+... ..+. ....+....+ .|.+++.+++|+++.++ .
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR--~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR--DFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc--cceeCCCCCEEEEEccCCC
Confidence 12345667777 8888877653 336778777543 2222 2222222223 44455999999988765 4
Q ss_pred eEEEEEee
Q 017773 299 QVFVYDVR 306 (366)
Q Consensus 299 ~i~iwd~~ 306 (366)
.|.+|..+
T Consensus 314 ~i~vf~~d 321 (346)
T COG2706 314 NITVFERD 321 (346)
T ss_pred cEEEEEEc
Confidence 68888775
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=7.2e-13 Score=111.83 Aligned_cols=211 Identities=15% Similarity=0.222 Sum_probs=154.3
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-------CceeEeeecCCCCceeeEEeccCCCceEEEecCC
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-------KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
.+.+|...|..++--.+ .+-+++++.|.+|++|.+.. ..+..++..|.. +|.++.|..+.+++ ++ .|
T Consensus 730 nf~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-~i~~igfL~~lr~i-~S--cD 803 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-PIHDIGFLADLRSI-AS--CD 803 (1034)
T ss_pred cccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-cccceeeeecccee-ee--cc
Confidence 45678888888887766 78899999999999999863 235667888888 99999999887766 54 48
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC-CCcEEEE-EecCCeEEEEecCCCCCCeeEe-----ecccCcEE
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF-GSSLVAA-GCADKKAYAYDVRKMVDPVLVF-----DGHRKTVT 237 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~v~ 237 (366)
|.|.+||.- -+.++..+......+.+..+..-|+ .+.++.+ ++...+|+++|.|.. .-...+ .+.+..+.
T Consensus 804 ~giHlWDPF--igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 804 GGIHLWDPF--IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred Ccceeeccc--ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchhee
Confidence 899999987 5666654443322333333333333 2244444 478899999999986 333332 34556788
Q ss_pred EEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEE-EEeecCceEEEE
Q 017773 238 YIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFV-YDVRWGEPVWVH 314 (366)
Q Consensus 238 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 314 (366)
+++.. .|+.++.+-..|.|.+.|.++|+.+..++..... .+.++- |..+.|+....|.++.+ |....+......
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--llqlaa-psdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--LLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch--hhhhcC-chhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99998 8999999999999999999999999888765443 333332 77888888888999999 987766555443
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=4.8e-10 Score=97.63 Aligned_cols=264 Identities=16% Similarity=0.138 Sum_probs=162.5
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+..+++++.+|.|..+|..+++...... -... ...... .+ +..++.++.++.+..+|.++++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~~----------~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVD---LDER----------LSGGVG--AD--GGLVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeec---CCCC----------cccceE--Ec--CCEEEEEcCCCEEEEEECCCCcE
Confidence 5678888889999999988877644111 1110 001111 12 56778888899999999999988
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC---eEEEEEcCCCCcEEEEEec
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA---VCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~ 210 (366)
+....... .+.+.-.. .+..+ +.++.+|.++.+|.+ +++.+........... ..+.... + ..++.+..
T Consensus 128 ~W~~~~~~--~~~~~p~v-~~~~v-~v~~~~g~l~a~d~~--tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~ 198 (377)
T TIGR03300 128 LWRAKLSS--EVLSPPLV-ANGLV-VVRTNDGRLTALDAA--TGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFA 198 (377)
T ss_pred eeeeccCc--eeecCCEE-ECCEE-EEECCCCeEEEEEcC--CCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECC
Confidence 76655433 22221111 23455 667789999999998 7777776654321000 0111111 2 35677888
Q ss_pred CCeEEEEecCCCCCCeeEeecc-cC---c------EE-EEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGH-RK---T------VT-YIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~-~~---~------v~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
++.++.+|.+++ +.+-..... .. . +. ...+ .+..++.++.+|.+..||..+++.+....... .
T Consensus 199 ~g~v~ald~~tG-~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~-- 272 (377)
T TIGR03300 199 GGKLVALDLQTG-QPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y-- 272 (377)
T ss_pred CCEEEEEEccCC-CEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c--
Confidence 899999999887 333222110 00 0 00 1111 35678888889999999999998776654211 1
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.... ..+..++.++.+|.|..+|..+++.++..... . .....+... .+..|++++.||.|+++|.+
T Consensus 273 ~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 273 QGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLTAPAV-----VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred cCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccccCEE-----ECCEEEEEeCCCEEEEEECC
Confidence 1111 34677888889999999999999988765210 0 111122222 23478888999999999987
Q ss_pred ccCC
Q 017773 360 KKPL 363 (366)
Q Consensus 360 ~~~l 363 (366)
++++
T Consensus 339 tG~~ 342 (377)
T TIGR03300 339 DGSF 342 (377)
T ss_pred CCCE
Confidence 6554
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-11 Score=95.61 Aligned_cols=261 Identities=18% Similarity=0.274 Sum_probs=171.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceeccc--ccceeeeecCceeceeeee--cCCceeEEEEecCCCCcEEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLV--DHPVVAVVDHSKVCDYYIC--TPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~ 116 (366)
..+.|+++.|...|.||+||...|.|.+|.-..... -.....+++|.....++.. -...|..+.|..+.....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 467899999999999999999999999998665331 1122345556555544432 235789999987633455666
Q ss_pred EcCCCcEEEEeCCCCc-------------------eeE-----------------------ee-ecCCCCceeeEEeccC
Q 017773 117 GDYDGVVMEYDLEKKV-------------------PIF-----------------------ER-DEHGGRRVWSVDYSKG 153 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~-------------------~~~-----------------------~~-~~~~~~~v~~i~~~~~ 153 (366)
.+.|.+|++|.+.... ++. .+ ..|.- -+.++.|+.+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y-hiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY-HINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee-EeeeeeecCc
Confidence 6779999999874320 000 00 11222 5778888887
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC-----CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC----
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS-----RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD---- 224 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---- 224 (366)
.+.+ +++ .|=.|.+|++....+ +........| ..-|++..|+|...+.+.-.+..|.|++-|+|...-
T Consensus 184 ~et~-lSa-DdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETL-LSA-DDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hhee-eec-cceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 7665 544 577899999984322 2222222222 235889999998878888888999999999985311
Q ss_pred -Cee----------EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-ceeeeeecccc------------ee-e
Q 017773 225 -PVL----------VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVN------------NR-N 278 (366)
Q Consensus 225 -~~~----------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~------------~~-~ 278 (366)
.+. -+.+-...|..+.|+ +|+++++- .--++++||++.. .+++++..|.. .| .
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 111 112223567888999 66666554 4568999999865 67777765431 11 1
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
-..++++-|.+.+.+|+..+..-+|-..
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecCCcccccccccccceeeeccc
Confidence 2344556888888899888777777643
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=6.1e-09 Score=87.18 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=163.2
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeec----------CCeEEEEEceecccccceeeeecCc
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGI----------ARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
..+...|.++.+++.....+...| .+ +||||+.|+++.. +..|.+||..+.+....+..-....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-----~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-----PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-----ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 566777787777765554442222 24 8999997777655 6799999999877654222110000
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEc-C-CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-Y-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
.. ....-..++++|+ |++|+... . +..|.+.|+.+++.+.++..... ..-...++ ... ..-+.||
T Consensus 101 ----~~--~~~~~~~~~ls~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~--~~vy~t~e-~~~--~~~~~Dg 167 (352)
T TIGR02658 101 ----FL--VGTYPWMTSLTPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC--YHIFPTAN-DTF--FMHCRDG 167 (352)
T ss_pred ----hh--ccCccceEEECCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC--cEEEEecC-Ccc--EEEeecC
Confidence 00 0112457899999 99888776 3 68999999999999988876442 22222222 121 1223455
Q ss_pred cEEEeeCCCCCCce-eEeecCC-CC-----CCCeEEEEEcC-CCCcEEEEEecCCeEEEEecCCCC----CCeeEeec--
Q 017773 166 TMQMWDPRCDGGKC-VSTVQPS-AS-----RSAVCCVEFHP-FGSSLVAAGCADKKAYAYDVRKMV----DPVLVFDG-- 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~-~~~~~~~-~~-----~~~i~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~-- 231 (366)
......+.. +++. ....... .. ..+ .+.+ +| ..+.+... |.|++.|+.... .....+..
T Consensus 168 ~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 168 SLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred ceEEEEecC-CCceEEeeeeeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 555444432 1221 1111110 00 112 4455 66 56666545 999999964431 22222211
Q ss_pred -----ccCcEEEEEEc-CCCEEEEEe----------CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEEe
Q 017773 232 -----HRKTVTYIRFL-DVDTLVTAG----------TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCG 294 (366)
Q Consensus 232 -----~~~~v~~~~~~-~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 294 (366)
..+...-++++ +++.++... ..+.|.++|..+++.+..+.... .+..++++ ||++ +|++.
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS--~Dgkp~lyvt 317 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVS--QDAKPLLYAL 317 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEEC--CCCCeEEEEe
Confidence 22334458898 878777642 22479999999999999887533 44566666 9999 77766
Q ss_pred c-CCCeEEEEEeecCceEEEE
Q 017773 295 S-ETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 295 ~-~dg~i~iwd~~~~~~~~~~ 314 (366)
. .++.|.++|..+++.+..+
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 5 5788999999999988776
No 274
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=103.00 Aligned_cols=166 Identities=19% Similarity=0.273 Sum_probs=130.5
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC----CCCeeEeecccC
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM----VDPVLVFDGHRK 234 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~ 234 (366)
++.+.+-.+-+-|++ ++. .+.+. ....|.++.|...+ +++..|+.+|.|..+|+|.. ..+...+. |..
T Consensus 228 fs~G~sqqv~L~nve--tg~-~qsf~---sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVE--TGH-QQSFQ---SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS 299 (425)
T ss_pred ecccccceeEEEEee--ccc-ccccc---cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc
Confidence 445556778888888 332 22232 33488999999877 89999999999999999976 33445554 888
Q ss_pred cEEEEEEc--CCCEEEEEeCCCcEEEEecCCCce---eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 235 TVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRV---IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 235 ~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
.|+++..- ++++|.+.+.+|.|++||++-.++ +.++.+|.+....+-+...+....++++++|-..+||.++.|.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 99998875 788999999999999999998777 9999999887777777777888999999999999999999999
Q ss_pred eEEEEecccccccCCCCceeeEEEeec
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
.+.++.++. ......+.+++|..
T Consensus 380 Ll~tipf~~----s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 380 LLCTIPFPY----SASEVDIPSVAFDS 402 (425)
T ss_pred eeeccCCCC----ccccccccceehhc
Confidence 998876553 33334566777743
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.2e-10 Score=99.43 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=129.2
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCce--EEEecCCC--cEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVL--GASGSDDG--TMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l--~~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
..|.+.|.+.+.... +..... ...+-.|+|+|+.+ +++...+| .|.+.++. .++........+ .....+
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~--~g~~~~lt~~~g---~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLE--NPAGKKILALQG---NQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCC-CcccceEccCCCceEEEEEEccCCCceEEEEECC--CCCceEeecCCC---CccceE
Confidence 467777876655433 333333 56788999999863 23454444 57777887 444433333223 445679
Q ss_pred EcCCCCcEEEEEecCC----eEEEEecCCC--CCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEe--cCC-Cc
Q 017773 197 FHPFGSSLVAAGCADK----KAYAYDVRKM--VDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWN--VND-SR 265 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~----~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd--~~~-~~ 265 (366)
|+|+|..++++...+| .+..|++..+ ..+..............+|+ +|+.|+..+ .+|...+|. +.. +.
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9999955555543333 3444676642 12333333323344677899 888777655 466555554 432 23
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
....+..+...+....| +|||+.|+..+.+ ..|.+||+.+++...... ....+....|+| ||+
T Consensus 318 ~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~---------~~~~~~~p~wSp---DG~ 383 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT---------SPENKESPSWAI---DSL 383 (428)
T ss_pred ceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC---------CCCCccceEECC---CCC
Confidence 33444444333344455 4999988865442 479999998887643221 123466789999 887
Q ss_pred EEEEeC-C--CCcEEEEEecccC
Q 017773 343 TLVAGG-S--DGLLHVFVGKKKP 362 (366)
Q Consensus 343 ~l~s~~-~--dg~i~iw~~~~~~ 362 (366)
.|+..+ . ...|++|++.++.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCC
Confidence 776433 2 3568888887643
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.2e-09 Score=105.50 Aligned_cols=252 Identities=13% Similarity=0.159 Sum_probs=157.4
Q ss_pred EEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCcee----ceeeeecCCceeEEEEecCCCCcEEEEE-cC
Q 017773 46 GVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV----CDYYICTPAKLSSLKWKPGTSGRVLGSG-DY 119 (366)
Q Consensus 46 ~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~ 119 (366)
..++++++ ++++++-...+.|++||...... . ........ ...-.+.-.....+++.++ ++.|+.+ ..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~---~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-V---QIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-E---EEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCC
Confidence 45788875 55666666778899999764321 1 11110000 0000011123578999987 7655554 44
Q ss_pred CCcEEEEeCCCCceeEeeecC--------C--------CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee
Q 017773 120 DGVVMEYDLEKKVPIFERDEH--------G--------GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV 183 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~--------~--------~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~ 183 (366)
++.|+++|+.++.. .++.+. . -.....++++|++..++++...++.|++||.. .+.. ..+
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~--~g~v-~~~ 720 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS--DGVT-RVF 720 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC--CCeE-EEE
Confidence 67899999877643 222110 0 01345799999766676888888999999987 3332 222
Q ss_pred cCC-------------CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE------------eecc------
Q 017773 184 QPS-------------ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV------------FDGH------ 232 (366)
Q Consensus 184 ~~~-------------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------~~~~------ 232 (366)
... ........++++|++..++++-..++.|++||+.++...... +...
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 110 011246679999998557777778899999999865211100 0000
Q ss_pred --cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc--------------cceeeeEEEEEecCCCeEEEec
Q 017773 233 --RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH--------------VNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 233 --~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
-.....++++ +++++++-..+++|++||..++.... +.+. -.....++++ ++|+++++-+
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd--~dG~lyVaDt 877 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALG--ENGRLFVADT 877 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEe--CCCCEEEEEC
Confidence 0123578888 78888888899999999998775442 2211 1123345555 9999999999
Q ss_pred CCCeEEEEEeecCce
Q 017773 296 ETNQVFVYDVRWGEP 310 (366)
Q Consensus 296 ~dg~i~iwd~~~~~~ 310 (366)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999988765
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=7.6e-12 Score=109.09 Aligned_cols=248 Identities=13% Similarity=0.188 Sum_probs=175.8
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCC--CceEEEecCCCcEEEeeCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGD--PVLGASGSDDGTMQMWDPRC 174 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~dg~v~~~d~~~ 174 (366)
+++.++..+|. |+-++.++.-| +.+.|+... .+..-+..-..-.|-.+.|+|.. ++- ++......-.+|++..
T Consensus 25 ~~~~a~si~p~--grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 25 GGFNAVSINPS--GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAK 100 (1081)
T ss_pred Ccccceeeccc--cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCcee-EEecCcchhhhhhhhc
Confidence 46888999998 98899988777 566777654 22222222222256778888763 344 4445556678899985
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCC
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTD 253 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 253 (366)
.+.+.+ .+-..+|...|+.+-|+|+.+.++++++.|-.+..||++....++.....-......++|+ ....+++.+..
T Consensus 101 ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 101 SSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred CCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 444444 3445688899999999999989999999999999999999878888877666777889998 44445556667
Q ss_pred CcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEE
Q 017773 254 GCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSV 332 (366)
Q Consensus 254 ~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 332 (366)
..|++||.+.+ .++..+++|...++.+.+.- .....+.+.+.|++|+.||............. -..+|+--
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr-~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-------t~~piw~~ 251 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR-FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-------TNFPIWRG 251 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhh-hhhhhhcccCCCCceeeecccccccccceecc-------ccCcceec
Confidence 88999999987 78889999888887776641 23456788899999999999865544433322 24677777
Q ss_pred EeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 333 CWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.+.|.+ +|.++.-.-.+..+.+++.+
T Consensus 252 r~~Pfg-~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 252 RYLPFG-EGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred cccccC-ceeEeccccCCeeeeecccc
Confidence 888876 45444433333355555443
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.3e-10 Score=98.18 Aligned_cols=272 Identities=12% Similarity=0.134 Sum_probs=186.1
Q ss_pred CcccccccceeeeeecCCCceeeecCCCCcc------------------------------CCCceEEEEECCCCCEEEE
Q 017773 10 PQAETTNERARCEWDFNLRTTVSSSSSPNAA------------------------------VSDSIGVIEFDPSDSVFAT 59 (366)
Q Consensus 10 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~------------------------------h~~~i~~~~~s~~~~~l~t 59 (366)
.-+....+-.+..|+.+.++++.+..++.+. |.+.|.-+.|+.+.+.|-|
T Consensus 9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 3344455677889999999999988887543 9999999999999999999
Q ss_pred eecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE-eee
Q 017773 60 GGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF-ERD 138 (366)
Q Consensus 60 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~ 138 (366)
...+|.|.+|-+-.+.--.... ...+ .+.|.+++|+.+ |..++....||.|.+=.++.++.-. .++
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi---NnRn--------KSvV~SmsWn~d--G~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI---NNRN--------KSVVVSMSWNLD--GTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh---hCcC--------ccEEEEEEEcCC--CcEEEEEEccCCEEEEeeccceecchhcc
Confidence 9999999999987754322111 1111 245999999999 9999999999999888776654322 222
Q ss_pred cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-----CceeEeecC--CCCCCCeEEEEEc--------CCCCc
Q 017773 139 EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG-----GKCVSTVQP--SASRSAVCCVEFH--------PFGSS 203 (366)
Q Consensus 139 ~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~-----~~~~~~~~~--~~~~~~i~~~~~~--------~~~~~ 203 (366)
+. ....+.|++|.+.+ +.+-.+|.+.++|...+- ..+...... ......|..+.|. |+- .
T Consensus 156 g~---~l~hv~ws~D~~~~-Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P 230 (1189)
T KOG2041|consen 156 GQ---LLAHVLWSEDLEQA-LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-P 230 (1189)
T ss_pred hh---eccceeecccHHHH-HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-C
Confidence 22 45578999998877 667778999999986210 011111100 0111245566663 343 7
Q ss_pred EEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC---------cEEEEecCCCceeeeeecc
Q 017773 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG---------CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~---------~i~iwd~~~~~~~~~~~~~ 273 (366)
.++++..+|.+.+..-.+...++..-.+ -.+....|+ +|..|+.++.+. .|.+|. .-|+.+.+++..
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvp 307 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVP 307 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecC
Confidence 8999999999999876665455544433 578889999 999999998653 455554 346777888877
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
...|+.++|- ..|-.++.+ -|+.|++=++
T Consensus 308 g~~It~lsWE--g~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 308 GSCITGLSWE--GTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred CceeeeeEEc--CCceEEEEE-ecceEEEEee
Confidence 7777776665 455444444 3455554443
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=5.3e-10 Score=86.28 Aligned_cols=238 Identities=13% Similarity=0.001 Sum_probs=154.8
Q ss_pred CcEEEEEcCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
..+|+.|+..|...+|...+.+.. +....+.. .|+-+.=.-+...-+..++.|.+++++++.-...+...... .
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~-- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--N-- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc--c--
Confidence 468999999999999999866533 22333322 22221111112222366788899999988732222222221 1
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE--eecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV--FDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV 266 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 266 (366)
-.+.++++++++ +++++.+....|..|.+......+.. .......-.+..|+ ....||++..||++.|||++....
T Consensus 159 ~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 159 LTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 148899999998 78999889999999999765443332 22333445677888 788999999999999999987532
Q ss_pred ee-----eeecccceeeeEEEEEecCC--CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCC
Q 017773 267 IR-----TYKGHVNNRNFVGLSVWRHG--GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
.. +-..|.+.++.+.|+ +.| .+|+..-.-+.+.+.|+++++....+...+..........|..-.|+.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fs--l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~--- 312 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFS--LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN--- 312 (344)
T ss_pred chhhhcccCCCCCCceEEEEec--CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC---
Confidence 22 223477888888887 544 234444445789999999998877776555444444445588888887
Q ss_pred CceEEEEeCCCCcEEEEEecc
Q 017773 340 DECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 340 ~~~~l~s~~~dg~i~iw~~~~ 360 (366)
++..+.+..++. +.=|++..
T Consensus 313 ~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 313 ENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred CCcccccccchh-hheeeccc
Confidence 555666665553 44565544
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=6.9e-09 Score=98.50 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=177.7
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.+.|.++.|-++...++.+..+|.|.+...+...... .....+. -...|.+++|+|| +..|+..+.++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~---------vd~GI~a~~WSPD--~Ella~vT~~~ 142 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGS---------VDSGILAASWSPD--EELLALVTGEG 142 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEE---------EcCcEEEEEECCC--cCEEEEEeCCC
Confidence 4679999999999989999999999998332211100 0111111 1357999999999 99999998899
Q ss_pred cEEEEeCC---------------C--------CceeEeeecC-----------------------CCCceeeEEeccCCC
Q 017773 122 VVMEYDLE---------------K--------KVPIFERDEH-----------------------GGRRVWSVDYSKGDP 155 (366)
Q Consensus 122 ~i~iw~~~---------------~--------~~~~~~~~~~-----------------------~~~~v~~i~~~~~~~ 155 (366)
++.+..-. . |+....+.+. .+..-..|+|-.||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 88876521 0 1111111110 011345688999999
Q ss_pred ceEEEecC---C---CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec---CCeEEEEecCCCCCCe
Q 017773 156 VLGASGSD---D---GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA---DKKAYAYDVRKMVDPV 226 (366)
Q Consensus 156 ~l~~~~~~---d---g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~ 226 (366)
++ |+.+. . +.+++|+-+ +......+ .-.+--.+++|-|.| ++||+... ...|.+|.-+....--
T Consensus 223 yF-AVss~~~~~~~~R~iRVy~Re---G~L~stSE--~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhge 295 (928)
T PF04762_consen 223 YF-AVSSVEPETGSRRVIRVYSRE---GELQSTSE--PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGE 295 (928)
T ss_pred EE-EEEEEEcCCCceeEEEEECCC---ceEEeccc--cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeee
Confidence 88 55443 2 578999965 55444433 222345678999999 78888754 3456677644331111
Q ss_pred eEe--ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc--eeeeeecc-cceeeeEEEEEec-CCCeEEEecCCCe
Q 017773 227 LVF--DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR--VIRTYKGH-VNNRNFVGLSVWR-HGGLLGCGSETNQ 299 (366)
Q Consensus 227 ~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~dg~ 299 (366)
..+ ......|..+.|+ ++..|+..-.|. |.+|-..+.. +-+++... ...+..+.|+ | +...|...+.+|.
T Consensus 296 F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd--pe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD--PEKPLRLHVLTSNGQ 372 (928)
T ss_pred EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC--CCCCCEEEEEecCCc
Confidence 222 2345689999999 889988877555 9999988764 22222221 1122334444 6 4455666666566
Q ss_pred EEEEEee----cCc--------eEEEE-------------eccccc--ccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 300 VFVYDVR----WGE--------PVWVH-------------DFEPVT--AAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 300 i~iwd~~----~~~--------~~~~~-------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
+..++.. .+. ....+ ..+|.. ..-.-...|.+++|++ ++..+++-..||.
T Consensus 373 ~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~---~~~~~avl~~d~~ 449 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP---SNSRFAVLTSDGS 449 (928)
T ss_pred EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC---CCCeEEEEECCCC
Confidence 6555432 111 01111 111111 1112356899999999 5557999999999
Q ss_pred EEEEEecc
Q 017773 353 LHVFVGKK 360 (366)
Q Consensus 353 i~iw~~~~ 360 (366)
|.+|....
T Consensus 450 l~~~~~~~ 457 (928)
T PF04762_consen 450 LSIYEWDL 457 (928)
T ss_pred EEEEEecC
Confidence 99998644
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=1.4e-09 Score=91.34 Aligned_cols=297 Identities=11% Similarity=0.116 Sum_probs=189.3
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeec
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT 96 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (366)
....+.|+..+...-...+ ...-++..++|||.|.+|++....| |.+|.-....... . ..|
T Consensus 11 ~~i~~f~~~~s~~~~~~~~----~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~-~~~---------- 71 (561)
T COG5354 11 AVISVFWNSQSEVIHTRFE----SENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---R-FRH---------- 71 (561)
T ss_pred ceEEEeecCcccccccccc----ccCcchhheeecCcchheehhhccc-eEEccccchhhee---e-eec----------
Confidence 4445666665544322221 1467899999999999999987654 9999877654222 1 222
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCC---------------cEEEEeCCCCceeEeeecCCCCc--ee-eEEeccCCCceE
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDG---------------VVMEYDLEKKVPIFERDEHGGRR--VW-SVDYSKGDPVLG 158 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~l~ 158 (366)
..|..+.|+|. +.+|.+=+..+ .+.+||..++..+..+..... + .+ -+.|+-++.++
T Consensus 72 -~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~- 146 (561)
T COG5354 72 -PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYV- 146 (561)
T ss_pred -CCceecccCcc--cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhh-
Confidence 24899999999 99999865433 499999999999998877665 4 44 67888887776
Q ss_pred EEecCCCcEEEeeCCCCCCc--eeEeecCCCCCCCeEEEEEcCCCC-cEEEE-----EecCCeEEEEecCCCCCCeeEee
Q 017773 159 ASGSDDGTMQMWDPRCDGGK--CVSTVQPSASRSAVCCVEFHPFGS-SLVAA-----GCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
+-- ....++++++. .... +...++ ...+....|+|.+. ..|+. .+..+.+++|.+... ..+.+..
T Consensus 147 ARv-v~~sl~i~e~t-~n~~~~p~~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~ 219 (561)
T COG5354 147 ARV-VGSSLYIHEIT-DNIEEHPFKNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKN 219 (561)
T ss_pred hhh-ccCeEEEEecC-CccccCchhhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-Ceeeeee
Confidence 332 23469999964 1222 222222 24788899999742 22333 356788999998754 3443333
Q ss_pred cccCcEEEEEEc-CCCEEEEEe-----------CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE--EecC
Q 017773 231 GHRKTVTYIRFL-DVDTLVTAG-----------TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG--CGSE 296 (366)
Q Consensus 231 ~~~~~v~~~~~~-~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 296 (366)
-.+..-..+.|. .|++++.-- ....+.+++++..... ......++|...+|. |.++.++ +|-.
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~--p~S~~F~vi~g~~ 296 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWE--PLSSRFAVISGYM 296 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeec--ccCCceeEEeccc
Confidence 223333456676 666554321 2245788888744332 222445676666666 7776655 4557
Q ss_pred CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC---CcEEEEEeccc
Q 017773 297 TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD---GLLHVFVGKKK 361 (366)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~ 361 (366)
+-.+.++|++.. ....+ ....=+.+.|+| .+++++.++-| |.+-+|+..++
T Consensus 297 pa~~s~~~lr~N-l~~~~----------Pe~~rNT~~fsp---~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 297 PASVSVFDLRGN-LRFYF----------PEQKRNTIFFSP---HERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccceeecccccc-eEEec----------CCcccccccccC---cccEEEEecCCccccceEEeccCCc
Confidence 889999999855 33322 134446678888 77788887765 67888887664
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=1.9e-09 Score=89.83 Aligned_cols=199 Identities=14% Similarity=0.158 Sum_probs=133.9
Q ss_pred ECCCCCEEEEeecCCeEEEEEceecccccceeeeecC-ceeceeeeecCCceeEEE-EecCCCCcEEEEEcCCCcEEEEe
Q 017773 50 FDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDH-SKVCDYYICTPAKLSSLK-WKPGTSGRVLGSGDYDGVVMEYD 127 (366)
Q Consensus 50 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~i~iw~ 127 (366)
.+.||+.++-. ..|.|.+||.++.........+.-. ......+. .+..-+. |++. +|++++..+ .|+..+.+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~---~pskyledfa~~-~Gd~ia~VS-RGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFV---NPSKYLEDFAVV-NGDYIALVS-RGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccccccccc---CHHHhhhhhccC-CCcEEEEEe-cCcEEEEC
Confidence 45578777663 4688999998876554422221111 11000010 1112222 3333 388998888 57788887
Q ss_pred CCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEE
Q 017773 128 LEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 206 (366)
...+-.++. ++.+ .|.-..+..+++.+ +.|..|| .+-++|.+ .++..+... .-+.|.++..+|+| +.++
T Consensus 348 ~~~~~~iqv--~~~~-~VrY~r~~~~~e~~-vigt~dgD~l~iyd~~--~~e~kr~e~---~lg~I~av~vs~dG-K~~v 417 (668)
T COG4946 348 PWDGYSIQV--GKKG-GVRYRRIQVDPEGD-VIGTNDGDKLGIYDKD--GGEVKRIEK---DLGNIEAVKVSPDG-KKVV 417 (668)
T ss_pred CCCCeeEEc--CCCC-ceEEEEEccCCcce-EEeccCCceEEEEecC--CceEEEeeC---CccceEEEEEcCCC-cEEE
Confidence 766544332 2333 68777777777766 8899998 89999998 554444333 34489999999999 7888
Q ss_pred EEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC----cEEEEecCCCc
Q 017773 207 AGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG----CLKLWNVNDSR 265 (366)
Q Consensus 207 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~ 265 (366)
++.....+.+.|+.++ +....-+...+-|+...|+ ++.+++.+--+| .|+++|+..++
T Consensus 418 vaNdr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 418 VANDRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEcCceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 9888899999999998 4544445566789999999 888888887666 58899987654
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=1.1e-09 Score=84.60 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=138.7
Q ss_pred EEEEECC-----CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCCcEEEEEc
Q 017773 46 GVIEFDP-----SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSGRVLGSGD 118 (366)
Q Consensus 46 ~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~ 118 (366)
..+.|-| ...+||.|+..|...+|...+.+.... ....+ ...+..... ...-.+..++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~s-------------nn~v~~~~r~cd~~~~~~i~s 135 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY--QCDVS-------------NNDVTLVKRYCDLKFPLNIAS 135 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccccee--eeccc-------------ccchhhhhhhcccccceeecc
Confidence 3455555 235899999999999999886443210 01111 111111110 0133466677
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.|.++++.+++.+..........- .+.+++++++++.+ ++.+....|..|.+.......+. +......+.-.+..|+
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~-~~ns~~~snd~~~~-~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNL-TQNSLHYSNDPSWG-SSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFS 212 (344)
T ss_pred CCcceeEEEEecCcccceeecccc-ceeeeEEcCCCceE-EEecCCCcceEEEeCCccceeee-eEecccCCCceeeeec
Confidence 788888888876543333332222 48899999998887 88888899999999844333333 3333444566788999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeE----eecccCcEEEEEEc-C--CCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLV----FDGHRKTVTYIRFL-D--VDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
... ..+|++..||++.|||+|....+... -..|++.+..+.|+ . -++|+..-.-+.+.+.|+++++..+.+.
T Consensus 213 ~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 213 END-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 887 89999999999999999987554432 24588999999998 3 3466666667889999999986655544
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3e-09 Score=90.32 Aligned_cols=276 Identities=12% Similarity=0.127 Sum_probs=174.6
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC----
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY---- 119 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---- 119 (366)
.=+-+.|||.|.||+|--..| |.+|--.+-...+ -..|. .|.-+.|+|. .++|++-+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~----RF~Hp-----------~Vq~idfSP~--EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ----RFYHP-----------GVQFIDFSPN--EKYLVTYSPEPII 273 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH----hccCC-----------CceeeecCCc--cceEEEecCCccc
Confidence 347799999999999987766 8899765533322 12232 4888999999 999998653
Q ss_pred -------CCcEEEEeCCCCceeEeeecCCCC-ce-eeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 120 -------DGVVMEYDLEKKVPIFERDEHGGR-RV-WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 120 -------dg~i~iw~~~~~~~~~~~~~~~~~-~v-~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
...+.|||+.+|...+.+...... .+ .-..|+.+++++ |.-.. ..|.||+.. +..++..-. -...
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~-Arm~~-~sisIyEtp--sf~lld~Ks--lki~ 347 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYF-ARMTG-NSISIYETP--SFMLLDKKS--LKIS 347 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCcee-EEecc-ceEEEEecC--ceeeecccc--cCCc
Confidence 257899999999888877663221 22 246899999987 65544 579999876 433332222 1234
Q ss_pred CeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe----------CCC
Q 017773 191 AVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG----------TDG 254 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~d~ 254 (366)
.|....|+|.+ ++||-=... ..+.+..+.+. +.+++..-++-.=..+-|- +|++|+.-- .-.
T Consensus 348 gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 348 GIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred cccCcccCCCc-ceEEEEcccccCCcceEEEEecCcc-ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 78999999986 777754321 34566666655 3444444444333445565 777776432 112
Q ss_pred cEEEEecCCCc-eeeeeecccceeeeEEEEEecCCCeEEEecC---CCeEEEEEeec-CceEE-EEecccccccCCCCce
Q 017773 255 CLKLWNVNDSR-VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE---TNQVFVYDVRW-GEPVW-VHDFEPVTAAGSERGF 328 (366)
Q Consensus 255 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~-~~~~~~~~~~~~~~~~ 328 (366)
.+.|+.++... ++..+. -.. ..++|+|.|.|..+++-+. ..++.+|.+++ ..... ...+ ....
T Consensus 426 n~eIfrireKdIpve~ve-lke--~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--------dk~~ 494 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVE-LKE--SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--------DKKF 494 (698)
T ss_pred eEEEEEeeccCCCceeee-cch--heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--------cccc
Confidence 35566665543 222332 222 3567777799987765443 35789998874 22111 1111 1345
Q ss_pred eeEEEeeccCCCceEEEEe---CCCCcEEEEEec
Q 017773 329 VSSVCWRRVGEDECTLVAG---GSDGLLHVFVGK 359 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~---~~dg~i~iw~~~ 359 (366)
.+.+.|+| .|++++.+ |..|.+.++|..
T Consensus 495 ~N~vfwsP---kG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 495 ANTVFWSP---KGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred cceEEEcC---CCcEEEEEEecccccceEEEecc
Confidence 78899999 88888765 457889999886
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=8.8e-09 Score=86.61 Aligned_cols=261 Identities=14% Similarity=0.161 Sum_probs=169.1
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceE-EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeec
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIG-VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT 96 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (366)
..++.|+..++.++.+..... ...... -+.|+-+.+|+|--. ...+.|+++...-.......+.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~--q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr------------ 172 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGIS--QPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLR------------ 172 (561)
T ss_pred CceeEEeccCceeEeeccccC--Ccccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcc------------
Confidence 368999999999988775431 111244 678898888877653 4579999973222222111111
Q ss_pred CCceeEEEEecCCCCcEEEE-----EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec---------
Q 017773 97 PAKLSSLKWKPGTSGRVLGS-----GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS--------- 162 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--------- 162 (366)
...|....|+|.+++..|+. .+.++++++|.+..+..+.+-....- .=..+.|++.|.++++-.-
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-~~~qLkW~~~g~~ll~l~~t~~ksnKsy 251 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-SGVQLKWQVLGKYLLVLVMTHTKSNKSY 251 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-cccEEEEecCCceEEEEEEEeeecccce
Confidence 24588899999755555554 45678999999987765544332222 2236788888888754321
Q ss_pred -CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEE-EecCCeEEEEecCCCCCCeeEeecccCcEEEEE
Q 017773 163 -DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAA-GCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIR 240 (366)
Q Consensus 163 -~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 240 (366)
....++|++++ . ..+.... .-.++|...+|.|.+..+.++ |-.+..+.++|++.. ... ......=+.+.
T Consensus 252 fgesnLyl~~~~--e-~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~--~~Pe~~rNT~~ 322 (561)
T COG5354 252 FGESNLYLLRIT--E-RSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRF--YFPEQKRNTIF 322 (561)
T ss_pred eccceEEEEeec--c-cccceec--cccccceeeeecccCCceeEEecccccceeecccccc--eEE--ecCCccccccc
Confidence 12467888887 2 2222221 234599999999988544333 457888999999874 333 33444556788
Q ss_pred Ec-CCCEEEEEeCC---CcEEEEecCCCceee-eeecccceeeeEEEEEecCCCeEEEecC------CCeEEEEEeec
Q 017773 241 FL-DVDTLVTAGTD---GCLKLWNVNDSRVIR-TYKGHVNNRNFVGLSVWRHGGLLGCGSE------TNQVFVYDVRW 307 (366)
Q Consensus 241 ~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~ 307 (366)
|+ .+++++.++.| |.+-+||......+. .+.+.. ...+.|+ |+++++.+... |..|.|||+..
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~ws--pd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWS--PDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeecc--CCceEEEecCCCcccccCcceEEEEecC
Confidence 88 78888887765 579999987764443 565542 2344555 99999887643 78899999864
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=7.7e-10 Score=97.41 Aligned_cols=301 Identities=12% Similarity=0.096 Sum_probs=197.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC----------C
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT----------S 110 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~ 110 (366)
|...-.++.|+|.| ++|-|+. ..|.+-|..+-+..+ .... |+..|+.+.|.|.+ .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~----------h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIEL----------HQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---cccc----------CccceeEEEeccCCCchhccCcccc
Confidence 44447889999988 7787764 578888877655444 3333 34679999998752 2
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEecc---CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK---GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA 187 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 187 (366)
.-+||++...|.|.+||...+..+..+..+.+ ++..++|-+ +.+.++++-.....+.+|+.. +++.......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd--tG~k~Wk~~y-- 153 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD--TGEKFWKYDY-- 153 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEcc--CCceeecccc--
Confidence 34678888899999999999988888888887 899999876 344666777778899999988 7887777663
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC------CCCeeEeecccC----------------c-------EE-
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM------VDPVLVFDGHRK----------------T-------VT- 237 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~----------------~-------v~- 237 (366)
......|+.+.|-..+.+..-+..|.+.+.+.-.. .+..+.-..|.. . .+
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~ 233 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYC 233 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHH
Confidence 33477789999987777777777888877765322 111222222221 0 01
Q ss_pred -EEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 238 -YIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 238 -~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
.++|+ .-+-++.......+.++|++-..++....-..+.+..+.+-+.|....|++.-.||.+.+|-.+.........
T Consensus 234 a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~ 313 (1062)
T KOG1912|consen 234 AQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP 313 (1062)
T ss_pred HhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc
Confidence 12334 1222233334567999999988888888877878888999866777789999999999999876522221110
Q ss_pred ccccccc---------CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 316 FEPVTAA---------GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 316 ~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
....... .-.+..+...+..|..| ..++.--.+|.+.+|++.++.+
T Consensus 314 ~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~--sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 314 NASLSMDLGEQVHVVRPMEEFRPVIGASCPSTP--SALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred chhhccccccceEEEeechhcccceeecCCCCh--hhhhhhhhcchhHHHhhhcCCc
Confidence 0000000 00122233444455333 3455555678888998885543
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.27 E-value=1.1e-08 Score=80.24 Aligned_cols=242 Identities=14% Similarity=0.111 Sum_probs=133.9
Q ss_pred EEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 017773 48 IEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYD 127 (366)
Q Consensus 48 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~ 127 (366)
++.+++|++||.- .|..|.|=..++.-.... ....-.+ .....-..++|+|| +.+||.+...|+|+++|
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~-~kcqVpk-------D~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII-GKCQVPK-------DPNPQWRKLAWSPD--CTLLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee-EEEecCC-------CCCchheEEEECCC--CcEEEEEcCCCeEEEEe
Confidence 5678899888875 577787766554222110 0000011 11234678999999 99999999999999999
Q ss_pred CCCCceeEeeecC------CCCceeeEEeccCC-----CceEEEecCCCcEEEeeCCC---CCCceeEeecCCC-CCCCe
Q 017773 128 LEKKVPIFERDEH------GGRRVWSVDYSKGD-----PVLGASGSDDGTMQMWDPRC---DGGKCVSTVQPSA-SRSAV 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~------~~~~v~~i~~~~~~-----~~l~~~~~~dg~v~~~d~~~---~~~~~~~~~~~~~-~~~~i 192 (366)
+.... +..+... -...|..+.|.+.. ..-+++-..+|.++-|-+.. ...+....+.... ....|
T Consensus 72 l~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred cccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 97533 3333221 12367777776532 12235556677777666531 2344455555433 35699
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-C-CCE-EEEEeCCCc------EEEEecCC
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D-VDT-LVTAGTDGC------LKLWNVND 263 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~-l~~~~~d~~------i~iwd~~~ 263 (366)
.++.++|.. ++|++|+.... +.+ . -++....+++-..- + ..+ .++...|+. -.+|.+-+
T Consensus 151 ~~~vy~p~h-~LLlVgG~~~~------~~~--~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 151 NSAVYHPKH-RLLLVGGCEQN------QDG--M---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred eEEEEcCCC-CEEEEeccCCC------CCc--c---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 999999987 56666654322 000 0 00111222222221 1 111 112222221 12333333
Q ss_pred CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 264 SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
.+...........|..+.++ |||..||+...+|.|.+|++.+-+......
T Consensus 219 ~~~fs~~~~~~d~i~kmSlS--Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLS--PDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred eeeeeccccCCCceEEEEEC--CCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 22221112233445555555 999999999999999999998877666554
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=2e-08 Score=95.50 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=146.4
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEE----eCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEY----DLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
.+.|.++.|.++ ...++.+..+|.|.+. +..... .+.-+.-+..|.+++|+||+..+ +..+.++++.+.+-
T Consensus 75 ~~~ivs~~yl~d--~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ell-a~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLAD--SESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELL-ALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEEeccC--CCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEE-EEEeCCCEEEEEec
Confidence 357999999999 8888888889999999 544433 22223333389999999999887 66777888888764
Q ss_pred CCCCCceeEeecCCCCC---CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 173 RCDGGKCVSTVQPSASR---SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
. ..++......... ...-++-|-....++=-+++....=.+-|..........+. ....-..++|- ||.+|+
T Consensus 150 ~---fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 150 D---FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFA 225 (928)
T ss_pred c---ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEE
Confidence 3 6666655543211 12223333322111100110000000011100000011222 34456789998 999999
Q ss_pred EEeC---C---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC---CCeEEEEEeecCceEEEEecccc
Q 017773 249 TAGT---D---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE---TNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 249 ~~~~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
+.+. . ..+|+|+- .|.+..+-+.-.+--..++|. |.|+++|+.-. ...|.+|. ++|-....+.++.
T Consensus 226 Vss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~Wr--PsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~- 300 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWR--PSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF- 300 (928)
T ss_pred EEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCC--CCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC-
Confidence 8874 2 46999995 465444433222223345555 99999998754 34566665 4566666655432
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
......|..+.|++ |+..||..-.|. |.+|...+
T Consensus 301 ---~~~~~~v~~l~Wn~---ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 301 ---DPEEEKVIELAWNS---DSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ---CCCCceeeEEEECC---CCCEEEEEecCC-ceEEEeeC
Confidence 23567899999999 777999987666 99998754
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=7.2e-08 Score=80.69 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=106.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCC-eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIAR-KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|...|.-..+..+++-++.|..|| .+-|+|..+++... .... -+.|.++..+|+ |++++.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr----~e~~----------lg~I~av~vs~d--GK~~vvaN 420 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR----IEKD----------LGNIEAVKVSPD--GKKVVVAN 420 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE----eeCC----------ccceEEEEEcCC--CcEEEEEc
Confidence 3788899999999998999999999 89999998876433 1111 246999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC----cEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG----TMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
....+.+.|++++.....-+...+ -|+.+.|+|+++.+ |.+--+| .|+++|+. .++....-...++ =.+
T Consensus 421 dr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~--~~Kiy~vTT~ta~---Dfs 493 (668)
T COG4946 421 DRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMD--GGKIYDVTTPTAY---DFS 493 (668)
T ss_pred CceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeE-EEecCcceeeeeEEEEecC--CCeEEEecCCccc---ccC
Confidence 999999999999976554444444 89999999999887 7766555 58999998 5555444433332 234
Q ss_pred EEEcCCCC
Q 017773 195 VEFHPFGS 202 (366)
Q Consensus 195 ~~~~~~~~ 202 (366)
-+|.|+++
T Consensus 494 PaFD~d~r 501 (668)
T COG4946 494 PAFDPDGR 501 (668)
T ss_pred cccCCCCc
Confidence 47888873
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=6.3e-10 Score=90.59 Aligned_cols=164 Identities=15% Similarity=0.206 Sum_probs=112.5
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce----eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP----IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
...+..++. ++++|.+..+....++++..... ........ .-+++.|..+.... ..+..-|.++-+|+-..
T Consensus 65 ~~~~~~s~~--~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~--~~~ai~~~~~~~sv-~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDS--GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK--RPTAISFIREDTSV-LVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCC--ceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc--CcceeeeeeccceE-EEEeecCCceeeeeecc
Confidence 344556676 88999988888877777765432 22222222 34455555555554 33333344444443311
Q ss_pred -CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCC
Q 017773 176 -GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDG 254 (366)
Q Consensus 176 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 254 (366)
.+.+...+ +|-..++.++++||+ ++|+++..|..|++-........-.-.-+|+.-|..++.-++..|++++.|+
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCC
Confidence 23333333 788899999999998 8999999999999988766522223345799999999998888899999999
Q ss_pred cEEEEecCCCceeeeeec
Q 017773 255 CLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~ 272 (366)
+|++||+++++.+.++..
T Consensus 216 tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cEEEEecccCCcccccch
Confidence 999999999998876653
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=6.3e-10 Score=90.60 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=112.1
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCC--CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC---eEEEEe
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG--GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK---KAYAYD 218 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d 218 (366)
....+..++.++.+ |.+..+....+++..... .+......... ..+++.+..+. .....+...| .+.+|.
T Consensus 64 a~~~~~~s~~~~ll-Av~~~~K~~~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLV-AVATSSKQRAVFDYRENPKGAKLLDVSCVPK---RPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEE-EEEeCCCceEEEEEecCCCcceeeeEeeccc---Ccceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 34445556655555 777777776677766322 22333333222 33444444443 3333433444 444554
Q ss_pred cCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecC
Q 017773 219 VRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 219 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
...+ +...+-+|-..++.++++ |+++++++..|..|++-.......+..+. ||..-|..+++. ++..|++||.
T Consensus 139 ~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~---~~~~LlS~sG 213 (390)
T KOG3914|consen 139 ADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT---DNYLLLSGSG 213 (390)
T ss_pred cccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec---cCceeeecCC
Confidence 4432 445566899999999999 99999999999999998887777777764 699888888886 5677999999
Q ss_pred CCeEEEEEeecCceEEEEecc
Q 017773 297 TNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~ 317 (366)
|++|++||+.+|+.+..+.+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred CCcEEEEecccCCcccccchh
Confidence 999999999999988766543
No 292
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-08 Score=83.42 Aligned_cols=249 Identities=13% Similarity=0.121 Sum_probs=149.4
Q ss_pred eeeeecCCceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
+.+..+...|..++|+|. .+ ++..++.+.+|+|.|+++...+..+..+. .+++++|.-+..+.++.|...|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~--~~GLl~~asl~nkiki~dlet~~~vssy~a~~--~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPF--NEGLLGLASLGNKIKIMDLETSCVVSSYIAYN--QIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCcc--ccceeeeeccCceEEEEecccceeeeheeccC--CceeeeeccCCcceeEEeccCceEEE
Confidence 466778889999999998 54 78889999999999999998888888884 89999999999998899999999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcC------CCCcEEEEEecCCeEEEEecCCCCC-Cee-EeecccCcEEEEEE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHP------FGSSLVAAGCADKKAYAYDVRKMVD-PVL-VFDGHRKTVTYIRF 241 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~~~~v~~~~~ 241 (366)
||++.+++ .+..+...-...+|..++.-+ .| -+++....+ ...|++..... ... .-.+..+...++..
T Consensus 263 yD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 263 YDMRQPEG-PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEccCCCc-hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99994332 333332212223555554433 22 233333222 44555433211 111 11123455556666
Q ss_pred c--CCCEEEEEeCCCc---EE----EEecCCCceeeeee-cccc----ee--eeEEEEEecCCCeEE-EecCCCeEEEEE
Q 017773 242 L--DVDTLVTAGTDGC---LK----LWNVNDSRVIRTYK-GHVN----NR--NFVGLSVWRHGGLLG-CGSETNQVFVYD 304 (366)
Q Consensus 242 ~--~~~~l~~~~~d~~---i~----iwd~~~~~~~~~~~-~~~~----~~--~~~~~~~~~~~~~l~-~~~~dg~i~iwd 304 (366)
. .+..|++.-.+.. ++ --|-.+|.++..-+ ++.+ .. .-..+.+ ++.++++ .|+..+.+.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~-~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV-EDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc-ccccEEEEecCCcceeEEec
Confidence 5 3344444433210 11 11223333332211 1100 00 0111111 4445554 556678899999
Q ss_pred eecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 305 VRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
..+++....+.+ +.+|.+++....+ .+.+|+.-. |..++||..+
T Consensus 418 ~~s~evvQ~l~~---------~epv~Dicp~~~n-~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLAL---------SEPVLDICPNDTN-GSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cchhheeeeccc---------CcceeecceeecC-Ccchhhhee-cceEEEEecC
Confidence 999998887753 3678888776543 345676665 5668998765
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.15 E-value=1.9e-09 Score=82.87 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=99.6
Q ss_pred CCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-----CCCcEEE
Q 017773 51 DPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-----YDGVVME 125 (366)
Q Consensus 51 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~i 125 (366)
+-.++.++++..||.+.+++.+.......... ..+. .-.+.++... ++.+.++. .-+..+.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~-~~~~-----------~~as~~~~~~--~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIP-SIHS-----------GSASRKICRH--GNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcc-cccc-----------cccccceeec--ccEEecCCcceEeeccceee
Confidence 33456799999999999999876322211000 0010 1112222222 44444432 1234556
Q ss_pred EeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE
Q 017773 126 YDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 205 (366)
|+++..+.........+ .|.+++-+|..++++++|+.||.+.+||.+.. ..+...++ .|+.++..+.|+|..+..|
T Consensus 164 ~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~--ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLK--AHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ecccccccccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHH--HhhhhhhheeccCCCchhe
Confidence 66554332222222223 69999999999999899999999999999932 22333333 6888999999999988999
Q ss_pred EEEecCCeEEEEecCC
Q 017773 206 AAGCADKKAYAYDVRK 221 (366)
Q Consensus 206 ~~~~~d~~i~i~d~~~ 221 (366)
+++++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999875
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=1.1e-07 Score=77.25 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=135.3
Q ss_pred CCcEEEEeCCCCceeEeeecCC-CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHG-GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
+|+|..||..+++.+....... .....+. ..++++.+ ++++.++.|..||.. +++.+............ . ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~--~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRV-YVASGDGNLYALDAK--TGKVLWRFDLPGPISGA--P-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEE-EEEETTSEEEEEETT--TSEEEEEEECSSCGGSG--E-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEE-EEEcCCCEEEEEECC--CCCEEEEeeccccccce--e-ee
Confidence 6889999999998888776522 1122211 22245666 666789999999998 78888887754321111 1 22
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeE-eeccc---CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLV-FDGHR---KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
. + ..+++++.++.++.+|.+++ +.+-. ..... ......... .++.++.+..++.|..+|.++|+.+......
T Consensus 75 ~-~-~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 75 D-G-GRVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp E-T-TEEEEEETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred c-c-cccccccceeeeEecccCCc-ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 2 2 35666668889999999888 45444 22221 112222333 5778888888999999999999998888764
Q ss_pred cceee---------eEEEEEecCCCeEEEecCCCe-EEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceE
Q 017773 274 VNNRN---------FVGLSVWRHGGLLGCGSETNQ-VFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECT 343 (366)
Q Consensus 274 ~~~~~---------~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 343 (366)
..... .....+ .++ .++.++.++. +.+ |+.+++.++... . ..+..+ ..+ ++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~--------~~~~~~-~~~---~~~~ 214 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I--------SGIYSL-PSV---DGGT 214 (238)
T ss_dssp TT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S--------S-ECEC-EEC---CCTE
T ss_pred CCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C--------CCccCC-cee---eCCE
Confidence 32210 111211 234 6666767775 555 999999776432 1 112221 223 4557
Q ss_pred EEEeCCCCcEEEEEecccC
Q 017773 344 LVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 344 l~s~~~dg~i~iw~~~~~~ 362 (366)
|+.++.++.|..||+++++
T Consensus 215 l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTEEEEEETTTTE
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 7777799999999998865
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.10 E-value=7.5e-07 Score=78.04 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=153.7
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeE-EEEecCCCCcEEEEEcCCCcEEEEeCCCCc
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSS-LKWKPGTSGRVLGSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 132 (366)
+..++.++.+|.+..+|.++++....... .. .+.+ .... +..++.+..++.+..+|.++|+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~-----------~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV---AG-----------EALSRPVVS----DGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC---CC-----------ceecCCEEE----CCEEEEECCCCEEEEEEccCCC
Confidence 44667777899999999998877652221 11 1111 1111 3456667778999999999998
Q ss_pred eeEeeecCCCCce-----eeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC-----CeEEEEEcC--C
Q 017773 133 PIFERDEHGGRRV-----WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS-----AVCCVEFHP--F 200 (366)
Q Consensus 133 ~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~--~ 200 (366)
.+........ .. .+-... +..+ +.++.+|.+..+|.. +++.+.......... ....+..+| .
T Consensus 182 ~~W~~~~~~~-~~~~~~~~sP~v~--~~~v-~~~~~~g~v~a~d~~--~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 182 VKWTVNLDVP-SLTLRGESAPATA--FGGA-IVGGDNGRVSAVLME--QGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred EeeeecCCCC-cccccCCCCCEEE--CCEE-EEEcCCCEEEEEEcc--CChhhheeccccCCCccchhcccccCCCcEEE
Confidence 8777654321 10 011111 2334 667778999999988 666555443211000 001111122 1
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccce-eee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN-RNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~ 279 (366)
+ ..++.++.+|.++.+|..++ +.+-.... .....+.. .+..++.++.+|.+..+|..+++.+-+...-... ...
T Consensus 256 ~-~~vy~~~~~g~l~ald~~tG-~~~W~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 G-GVVYALAYNGNLVALDLRSG-QIVWKREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTA 330 (394)
T ss_pred C-CEEEEEEcCCeEEEEECCCC-CEEEeecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccC
Confidence 3 35666778999999999987 33322221 11112222 4567778888999999999999776543321111 111
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
..+ .+.+|+.++.+|.|...|..+|+.+...+... ........+. ++ .|+.++.||.|+.+++
T Consensus 331 p~v----~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-------~~~~s~P~~~----~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PVL----YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS-------SGFLSEPVVA----DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CEE----ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------CcceeCCEEE----CC-EEEEEeCCceEEEEeC
Confidence 112 35677888899999999999999988775421 1111111221 33 6777889999888764
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.10 E-value=7.8e-08 Score=78.15 Aligned_cols=223 Identities=14% Similarity=0.122 Sum_probs=134.4
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCC
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGG 142 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 142 (366)
+|.|..||..+++........... ....+... ++ +..+++++.++.+..||..+|+.+.......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~-----------~~~~~~~~-~~--~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~- 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI-----------GGPVATAV-PD--GGRVYVASGDGNLYALDAKTGKVLWRFDLPG- 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC-----------SSEEETEE-EE--TTEEEEEETTSEEEEEETTTSEEEEEEECSS-
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-----------CCccceEE-Ee--CCEEEEEcCCCEEEEEECCCCCEEEEeeccc-
Confidence 577888888776655422110000 11221122 23 6677777889999999999999888777633
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee-cCCCCC-CCeEEEEEcCCCCcEEEEEecCCeEEEEecC
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV-QPSASR-SAVCCVEFHPFGSSLVAAGCADKKAYAYDVR 220 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 220 (366)
++..... ..+..+ +.++.++.+..+|.. +++.+... ...... ...........+ ..++++..++.|+.+|++
T Consensus 67 -~~~~~~~-~~~~~v-~v~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 67 -PISGAPV-VDGGRV-YVGTSDGSLYALDAK--TGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp -CGGSGEE-EETTEE-EEEETTSEEEEEETT--TSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETT
T ss_pred -cccceee-eccccc-ccccceeeeEecccC--CcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecC
Confidence 2222222 224445 555678899999988 78888774 322111 111122222224 577788789999999999
Q ss_pred CCCCCeeEeecccCc----------E-EEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC
Q 017773 221 KMVDPVLVFDGHRKT----------V-TYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG 289 (366)
Q Consensus 221 ~~~~~~~~~~~~~~~----------v-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
++ +.+-........ + ..+.+.++ .++.++.++.+..+|+.+++.+.+.. ...... ... .++.
T Consensus 141 tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~--~~~~ 213 (238)
T PF13360_consen 141 TG-KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPS--VDGG 213 (238)
T ss_dssp TT-EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEE--CCCT
T ss_pred CC-cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-Cce--eeCC
Confidence 98 555555443311 1 22222344 77777777754444999998664333 222111 122 6788
Q ss_pred eEEEecCCCeEEEEEeecCceEEE
Q 017773 290 LLGCGSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 290 ~l~~~~~dg~i~iwd~~~~~~~~~ 313 (366)
.|+.++.++.|..||+++|+..+.
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeE
Confidence 888888999999999999998764
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2.3e-08 Score=88.43 Aligned_cols=243 Identities=16% Similarity=0.142 Sum_probs=169.7
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC-----------CCceEEEecCCCcE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG-----------DPVLGASGSDDGTM 167 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~-----------~~~l~~~~~~dg~v 167 (366)
.-.++.|+|. .++|-|+ ...|.+.|..+-+.+..+..|.. .|+.+.|.|. ...+++++...|.|
T Consensus 17 N~~A~Dw~~~---GLiAygs-hslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPS---GLIAYGS-HSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCcc---ceEEEec-CceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3577899994 4677776 45788999988888999988887 9999999863 23466888899999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC---CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF---GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-- 242 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-- 242 (366)
.+||.. ....+..++ .+..++..++|-|. .+.++++-.....+.+|+..++ ...-.+........++.+.
T Consensus 92 il~d~~--~~s~~~~l~--~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG-~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 92 ILVDFV--LASVINWLS--HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG-EKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred EEEEeh--hhhhhhhhc--CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC-ceeeccccCCcceeeeeeCCC
Confidence 999998 555555554 56668899998663 2357777788899999999998 4444444444566667775
Q ss_pred CCCEEEEEeCCCcEEEEecCC-------Cceeeeeecccc-----------------------eeeeEEEEEecCCCeEE
Q 017773 243 DVDTLVTAGTDGCLKLWNVND-------SRVIRTYKGHVN-----------------------NRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~ 292 (366)
+...|..-+..|.+.+-+.-- ++..+.-..|.. ...+..|+|+|.-+.++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 667777777777776665421 111111111111 11345566667665555
Q ss_pred EecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 293 CGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
-......+.++|++-..++....++ .+.+.-+.|-|.. ....|++.-.||.+.+|-.+.
T Consensus 247 fi~~prellv~dle~~~~l~vvpie--------r~~akfv~vlP~~-~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIE--------RGGAKFVDVLPDP-RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEec--------cCCcceeEeccCC-CcceEEEEecCCeEEEEEeec
Confidence 5556678999999988888887665 3555667777743 345799999999999997654
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.1e-10 Score=89.91 Aligned_cols=161 Identities=19% Similarity=0.349 Sum_probs=119.0
Q ss_pred EEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC---CCcee
Q 017773 104 KWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD---GGKCV 180 (366)
Q Consensus 104 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~---~~~~~ 180 (366)
+|+-+..+.. ++.+.+-.|.+-|++++-. ..+. ....|.++.|...++.+ ..|..+|.|..+|++.. .+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~nLv-~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDNLV-FNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCCee-EecccCCcEEEEEeeecccCCCcce
Confidence 5654422444 4555577788899988743 2233 22379999998877766 99999999999999943 23445
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeecccCcEEEEEEc---CCCEEEEEeCCC
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDGHRKTVTYIRFL---DVDTLVTAGTDG 254 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~ 254 (366)
..+. |...|+++..-...++.|++.+.+|+|.+||.|.. +. +..+.+|-..-.-+-++ ....+++++.|.
T Consensus 293 ~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 293 QRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCee
Confidence 5553 66688888877633478888889999999999976 44 88888887665555554 556788899999
Q ss_pred cEEEEecCCCceeeeeecc
Q 017773 255 CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~ 273 (366)
..|||.++.++++.+++-.
T Consensus 369 ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEEecccCceeeccCCC
Confidence 9999999999999888643
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.3e-09 Score=86.63 Aligned_cols=258 Identities=14% Similarity=0.058 Sum_probs=174.2
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|.+.|+.+.... .+++.+++.||.++.|.-..... ......+.+|-+.|.+++.+-+ +.++.+.+.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG----------vEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d 73 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG----------VEFVKHFRAHLGVILSLAVSYD--GWLFRSVED 73 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc----------eeehhhhHHHHHHHHhhhcccc--ceeEeeccC
Confidence 3888888887654 46999999999999997543111 1122234566778999999998 999999777
Q ss_pred -CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC--ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 120 -DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP--VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 120 -dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
|..++++|+++-..+..++...-..-.+...++... .+.++.-.++.+.++|-. ...+.......-|..+|.++.
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEE
Confidence 999999999876544333222110111222223211 333445568999999988 333333333335778999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCC-CCCee-------------EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKM-VDPVL-------------VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~-------------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
++|.+ ..+++....|.|.-|..... +.+.. .+...+....++.|+ ++..+.+-+.|..|++++.
T Consensus 152 y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred eeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 99998 78888888999999988731 11111 112234567889999 9999999999999999999
Q ss_pred CCCceeeeeecc-------------------------------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 262 NDSRVIRTYKGH-------------------------------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 262 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
++++.++.+..- .+........|...|++|+-|+-=| |++.++.++..
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 998766544310 1112223334558899999888765 89999999887
Q ss_pred EEEE
Q 017773 311 VWVH 314 (366)
Q Consensus 311 ~~~~ 314 (366)
.+.+
T Consensus 310 ~ri~ 313 (558)
T KOG0882|consen 310 VRIL 313 (558)
T ss_pred EEEe
Confidence 7665
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=7.6e-07 Score=72.63 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=136.7
Q ss_pred EEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEe-cCCCCcEEEEEcCCCcEE
Q 017773 47 VIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWK-PGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 47 ~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~i~ 124 (366)
+..|.+ ++.++++--..+.|..|+..+..... ... .....+++. ++ +.++++. .. .+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----~~~-----------~~~~G~~~~~~~--g~l~v~~-~~-~~~ 63 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----IDL-----------PGPNGMAFDRPD--GRLYVAD-SG-GIA 63 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----EES-----------SSEEEEEEECTT--SEEEEEE-TT-CEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----Eec-----------CCCceEEEEccC--CEEEEEE-cC-ceE
Confidence 467887 67777776678899999987654311 111 125677787 54 5555554 34 456
Q ss_pred EEeCCCCceeEeeec---C-CCCceeeEEeccCCCceEEEecCC--------CcEEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 125 EYDLEKKVPIFERDE---H-GGRRVWSVDYSKGDPVLGASGSDD--------GTMQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 125 iw~~~~~~~~~~~~~---~-~~~~v~~i~~~~~~~~l~~~~~~d--------g~v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
++|+.+++....... . .....+.+++.++|+.. ++.... |.|..++.. ++...... .....
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly-~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~---~~~~p 136 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLY-VTDSGGGGASGIDPGSVYRIDPD---GKVTVVAD---GLGFP 136 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EE-EEEECCBCTTCGGSEEEEEEETT---SEEEEEEE---EESSE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEE-EEecCCCccccccccceEEECCC---CeEEEEec---Ccccc
Confidence 669988855443332 1 33378899999999855 554433 446666654 33333222 12368
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe---eEe---ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV---LVF---DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~---~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
+.++|+|+++.++++-+..+.|..+++......+ ..+ ....+....+++. +|++.++....+.|.++|.. ++
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 8999999995566677788999999997543311 122 2222347789998 88888888889999999977 88
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEE
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
.+..+......++.++|. -++.+.|+.
T Consensus 216 ~~~~i~~p~~~~t~~~fg-g~~~~~L~v 242 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFG-GPDGKTLYV 242 (246)
T ss_dssp EEEEEE-SSSSEEEEEEE-STTSSEEEE
T ss_pred EEEEEcCCCCCEEEEEEE-CCCCCEEEE
Confidence 888887664455666663 245454443
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1.1e-06 Score=71.69 Aligned_cols=209 Identities=16% Similarity=0.171 Sum_probs=134.2
Q ss_pred EEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEec-cCCCceEEEecCCCcEEEeeCCCCCCcee
Q 017773 102 SLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYS-KGDPVLGASGSDDGTMQMWDPRCDGGKCV 180 (366)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~~dg~v~~~d~~~~~~~~~ 180 (366)
+..|.+. .+.++++-...+.|..|+..+++... +... ....+++. ++ ..+ +.+.. +.+.++|+. +++..
T Consensus 4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~~~G~~~~~~~-g~l-~v~~~-~~~~~~d~~--~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---GPNGMAFDRPD-GRL-YVADS-GGIAVVDPD--TGKVT 73 (246)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTTTEEEE-EESS---SEEEEEEECTT-SEE-EEEET-TCEEEEETT--TTEEE
T ss_pred ceEEECC-CCEEEEEEcCCCEEEEEECCCCeEEE-EecC---CCceEEEEccC-CEE-EEEEc-CceEEEecC--CCcEE
Confidence 5788883 27888888889999999998876433 2222 25677777 55 445 44444 445666988 55443
Q ss_pred EeecC--CC-CCCCeEEEEEcCCCCcEEEEEecC--------CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 181 STVQP--SA-SRSAVCCVEFHPFGSSLVAAGCAD--------KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 181 ~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
..... .. .....+.+++.|+| ++.++.... |.|+.++.. + + .......-...+.++|+ +++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-C-e-EEEEecCcccccceEECCcchhee
Confidence 33332 22 44578999999999 666665433 567777776 3 3 33333345567899999 887664
Q ss_pred -EEeCCCcEEEEecCCCce-------eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccc
Q 017773 249 -TAGTDGCLKLWNVNDSRV-------IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 249 -~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
+-+..+.|..+++..... ...+....+....+++. .+|++.++....+.|.+++.+ |+.+..+.++
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--- 223 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDGNLWVADWGGGRIVVFDPD-GKLLREIELP--- 223 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---
Confidence 667788899999864321 11222222223455655 899988888788999999987 8888877654
Q ss_pred ccCCCCceeeEEEee
Q 017773 321 AAGSERGFVSSVCWR 335 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~ 335 (366)
...+++++|.
T Consensus 224 -----~~~~t~~~fg 233 (246)
T PF08450_consen 224 -----VPRPTNCAFG 233 (246)
T ss_dssp -----SSSEEEEEEE
T ss_pred -----CCCEEEEEEE
Confidence 2368999994
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=6.6e-09 Score=82.12 Aligned_cols=216 Identities=16% Similarity=0.230 Sum_probs=141.7
Q ss_pred CCceEEEEECCCC--CEEEEeecCCeEEEEEceeccccc------------------------ceeeeecCcee-----c
Q 017773 42 SDSIGVIEFDPSD--SVFATGGIARKIRIYNIKSVLVDH------------------------PVVAVVDHSKV-----C 90 (366)
Q Consensus 42 ~~~i~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~------------------------~~~~~~~~~~~-----~ 90 (366)
.+.|..+.|-.++ ..++..+.|.+|++|.+....... ....+..|... +
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4568888887665 244555679999999987541110 01112222221 1
Q ss_pred eee-eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc---eeEeeecCCC----CceeeEEeccCCCceEEEec
Q 017773 91 DYY-ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV---PIFERDEHGG----RRVWSVDYSKGDPVLGASGS 162 (366)
Q Consensus 91 ~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~~ 162 (366)
+.+ -.|+--|.++.|+.+ .+.++++. |=.|.+|+++... .+..++.|.- .-|++..|+|....++...+
T Consensus 165 rvyaNaH~yhiNSiS~NsD--~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 165 RVYANAHPYHINSISFNSD--KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred eeccccceeEeeeeeecCc--hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 222 467888999999998 77787765 7789999987543 2333333331 25788999999888878888
Q ss_pred CCCcEEEeeCCCCC----CceeEeecCC--------CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee
Q 017773 163 DDGTMQMWDPRCDG----GKCVSTVQPS--------ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 163 ~dg~v~~~d~~~~~----~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
..|.|++-|++... ...+...... +-...|..+.|+++| +++++- .--+|++||.+....++.+..
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsR-dyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSR-DYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEe-ccceEEEEecccccCCceeec
Confidence 99999999998210 0111111110 113478899999998 677664 457899999999888888876
Q ss_pred ccc------------CcE---EEEEEc-CCCEEEEEeCCCcEEEEecC
Q 017773 231 GHR------------KTV---TYIRFL-DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 231 ~~~------------~~v---~~~~~~-~~~~l~~~~~d~~i~iwd~~ 262 (366)
.|. ..| ..+.|+ +.+.+++|+..+..-+|-..
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 553 222 245677 77888888888777777643
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.04 E-value=8.6e-07 Score=71.91 Aligned_cols=232 Identities=14% Similarity=0.107 Sum_probs=147.7
Q ss_pred CceEEEEECC-CCCEEEEeecCCe-EEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc--
Q 017773 43 DSIGVIEFDP-SDSVFATGGIARK-IRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-- 118 (366)
Q Consensus 43 ~~i~~~~~s~-~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-- 118 (366)
..-..++.+| .+..++.+-.-|+ ..+||..+++....... ....-+.+| -.|+++ |++|++.-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----~~gRHFyGH------g~fs~d--G~~LytTEnd 71 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----PPGRHFYGH------GVFSPD--GRLLYTTEND 71 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----CCCCEEecC------EEEcCC--CCEEEEeccc
Confidence 4456778888 5567777776664 77899988776552221 111223344 579999 99999863
Q ss_pred ---CCCcEEEEeCC-CCceeEeeecCCCCceeeEEeccCCCceEEE-ec----------------CCCcEEEeeCCCCCC
Q 017773 119 ---YDGVVMEYDLE-KKVPIFERDEHGGRRVWSVDYSKGDPVLGAS-GS----------------DDGTMQMWDPRCDGG 177 (366)
Q Consensus 119 ---~dg~i~iw~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~----------------~dg~v~~~d~~~~~~ 177 (366)
..|.|-|||.. +-+.+.++..+.- .-..+.+.|+++.|++. |+ .+-.+.+.|.. ++
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~--sG 148 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR--SG 148 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC--CC
Confidence 35899999999 4567777777665 56788899999777332 11 11245556666 67
Q ss_pred ceeEeecC--CCCCCCeEEEEEcCCCCcEEEEEecCC-------eEEEEecCCCCCCeeEe-------ecccCcEEEEEE
Q 017773 178 KCVSTVQP--SASRSAVCCVEFHPFGSSLVAAGCADK-------KAYAYDVRKMVDPVLVF-------DGHRKTVTYIRF 241 (366)
Q Consensus 178 ~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~ 241 (366)
+.+..... ..|...|.-+++.++| ..++..-..| .+.+++... ....+ ..-...+-+|++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEE
Confidence 77777555 4577789999999998 4444433322 233443332 12222 123467889999
Q ss_pred c-CCCEEE-EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeE
Q 017773 242 L-DVDTLV-TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQV 300 (366)
Q Consensus 242 ~-~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 300 (366)
+ ++.+++ |+=..+.+.+||..+++.+....-.. +..++.. +++ ++++.+. |.+
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~--~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPT--DDG-FLVSSGQ-GQL 279 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeec--CCc-eEEeCCC-ccE
Confidence 8 777664 55567789999999999887766442 2233333 555 6666554 443
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=3.8e-07 Score=79.88 Aligned_cols=272 Identities=14% Similarity=0.117 Sum_probs=157.0
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeec-CCcee-EEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT-PAKLS-SLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
+..+++++.+|.+.-+|..+++......... ... .+... +..+. .+... +..++.++.+|.+..+|.++|
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~---~~~~~~~~~~~~~~~v~----~~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSE-KDG---WFSKNKSALLSGGVTVA----GGKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCC-ccc---ccccccccccccccEEE----CCEEEEEcCCCEEEEEECCCC
Confidence 4567777778899999988877654211110 000 00000 00010 11121 556777888999999999999
Q ss_pred ceeEeeecCCCCceee-EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC---eEEEEEcCCCCcEEEE
Q 017773 132 VPIFERDEHGGRRVWS-VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA---VCCVEFHPFGSSLVAA 207 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~ 207 (366)
+.+....... .+.+ .... +..+ +.+..++.+.-+|.. +++.+........... ..+-... + ..++.
T Consensus 141 ~~~W~~~~~~--~~~ssP~v~--~~~v-~v~~~~g~l~ald~~--tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~ 210 (394)
T PRK11138 141 EVAWQTKVAG--EALSRPVVS--DGLV-LVHTSNGMLQALNES--DGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIV 210 (394)
T ss_pred CCcccccCCC--ceecCCEEE--CCEE-EEECCCCEEEEEEcc--CCCEeeeecCCCCcccccCCCCCEEE--C-CEEEE
Confidence 8877665443 2222 1221 3444 667788999999998 7888777754311000 0011111 2 24666
Q ss_pred EecCCeEEEEecCCCCCCeeEeeccc----C---cE----EEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccce
Q 017773 208 GCADKKAYAYDVRKMVDPVLVFDGHR----K---TV----TYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN 276 (366)
Q Consensus 208 ~~~d~~i~i~d~~~~~~~~~~~~~~~----~---~v----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (366)
++.+|.+..+|..++ +.+-...... . .. ..... .+..++.++.+|.+..+|..+++.+-+.... .
T Consensus 211 ~~~~g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~ 286 (394)
T PRK11138 211 GGDNGRVSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALDLRSGQIVWKREYG--S 286 (394)
T ss_pred EcCCCEEEEEEccCC-hhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEECCCCCEEEeecCC--C
Confidence 778999999998887 3332221100 0 00 01111 3456777788999999999999876554321 1
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
.... . ..+..++.++.+|.+..+|..+|+.++...... + ....+.... ++ .|+.++.||.|++.
T Consensus 287 ~~~~--~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~------~-~~~~sp~v~----~g-~l~v~~~~G~l~~l 350 (394)
T PRK11138 287 VNDF--A--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL------H-RLLTAPVLY----NG-YLVVGDSEGYLHWI 350 (394)
T ss_pred ccCc--E--EECCEEEEEcCCCeEEEEECCCCcEEEcccccC------C-CcccCCEEE----CC-EEEEEeCCCEEEEE
Confidence 1111 1 346677788889999999999998877542110 0 111222221 32 56777888888888
Q ss_pred EecccCC
Q 017773 357 VGKKKPL 363 (366)
Q Consensus 357 ~~~~~~l 363 (366)
|.+++++
T Consensus 351 d~~tG~~ 357 (394)
T PRK11138 351 NREDGRF 357 (394)
T ss_pred ECCCCCE
Confidence 8776543
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.8e-07 Score=80.59 Aligned_cols=212 Identities=11% Similarity=0.026 Sum_probs=125.9
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCc-eEEEecC--CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV-LGASGSD--DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
..|.+-|.+...... +... + ......|+|+++. ++++... +..|.++|+. +++....... .+......|
T Consensus 169 ~~l~~~d~dg~~~~~-~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~--tg~~~~lt~~---~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTLTYQKV-IVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY--TGKKEKIASS---QGMLVVSDV 240 (419)
T ss_pred ceEEEECCCCCceeE-EccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC--CCcEEEEecC---CCcEEeeEE
Confidence 456666665443222 2222 3 6778999999986 4333332 3568889987 5554444332 235667789
Q ss_pred cCCCCcEEEEEecC--CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC-CC--cEEEEecCCCceeeeee
Q 017773 198 HPFGSSLVAAGCAD--KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT-DG--CLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 198 ~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~ 271 (366)
+|+|..++++.+.+ ..|+++|+.++ ....+..+........|+ +|+.|+..+. .+ .|.+.|+.+++......
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 99996666665544 46888888765 344444444333456788 8877665553 33 57888887776533222
Q ss_pred cccceeeeEEEEEecCCCeEEEecCC---------CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSET---------NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
. .. ... .++|+|+.|+..... ..|.+.|+.+++... +.. ........|+| ||+
T Consensus 319 ~-g~--~~~--~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~---------~~~~~~p~~SP---DG~ 380 (419)
T PRK04043 319 H-GK--NNS--SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA---------NGVNQFPRFSS---DGG 380 (419)
T ss_pred C-CC--cCc--eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC---------CCCcCCeEECC---CCC
Confidence 1 11 122 455999988766543 368888887776432 211 11223578999 887
Q ss_pred EEEEeCCC-C--cEEEEEecc
Q 017773 343 TLVAGGSD-G--LLHVFVGKK 360 (366)
Q Consensus 343 ~l~s~~~d-g--~i~iw~~~~ 360 (366)
.|+....+ + .|.+.++++
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEEccCCcEEEEEEecCC
Confidence 77655433 2 355666654
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.98 E-value=3.4e-08 Score=88.92 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=134.1
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
+.|+....+..+|++ +.+..+....... .+.-++.+ + +.+.+|...|+|.+-|.++. +.++++..|.+.+..
T Consensus 151 i~Gg~Q~~li~~Dl~--~~~e~r~~~v~a~--~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 151 IMGGLQEKLIHIDLN--TEKETRTTNVSAS--GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISD 222 (1118)
T ss_pred eecchhhheeeeecc--cceeeeeeeccCC--ceEEEEec--C-cEEEeecccceEEeecCCcC-ceeeeeeccccceee
Confidence 677777788889998 5555554443222 46656554 3 78999999999999999998 799999999999987
Q ss_pred EEEcCCCEEEEEeC---------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec-C
Q 017773 239 IRFLDVDTLVTAGT---------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-G 308 (366)
Q Consensus 239 ~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 308 (366)
+.. .|+.|+++|. |..|++||++..+.+..+.-+.++ ..+.|.++ -...+++.+..|...+-|..+ +
T Consensus 223 fDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps-l~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS-LTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc-ccceEEEEecccceeeccccccC
Confidence 766 5778888873 456899999998888777766655 56666632 245677777889999988432 2
Q ss_pred ce-EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 309 EP-VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 309 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+ .....+.+ ....+.++.+++ +++.|+.|..+|.|.+|.-...+
T Consensus 300 NP~~~~~~v~p------~~s~i~~fDiSs---n~~alafgd~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 300 NPPAGVKMVNP------NGSGISAFDISS---NGDALAFGDHEGHVNLWADRPQP 345 (1118)
T ss_pred CCccceeEEcc------CCCcceeEEecC---CCceEEEecccCcEeeecCCCCC
Confidence 22 22222222 345599999999 77899999999999999854443
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=6.3e-10 Score=99.48 Aligned_cols=214 Identities=15% Similarity=0.218 Sum_probs=146.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|....+|++|+-+.+.|+.|+..|.|+++++.++.... ...+|.++|+-+.=+.+ |..+++.+.-
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------------s~ncH~SavT~vePs~d--gs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------------SVNCHQSAVTLVEPSVD--GSTQLTSSSS 1164 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------------cccccccccccccccCC--cceeeeeccc
Confidence 78889999999999999999999999999999886644 24467788999988877 7666655432
Q ss_pred --CcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC--CCCCCeEEE
Q 017773 121 --GVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS--ASRSAVCCV 195 (366)
Q Consensus 121 --g~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~~~~~i~~~ 195 (366)
--..+|++.+ +.+...+. .-.++.|+.....- +.|+......+||+. +..+..++-.. +....-++.
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r-~~gt~~d~a~~YDvq--T~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFR-ALGTEADDALLYDVQ--TCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred cCchHHHhccccccCcccccc-----ccceeehhhhHHHH-HhcccccceEEEecc--cCcHHHHhcCcchhhhhhcccc
Confidence 3577899865 33344443 34578888765554 555555679999999 66655553211 122233678
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccc
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV 274 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 274 (366)
.|+|+. .+++ .|| .+||.|.. ..++.|...+..+ .-.|+ .|..++.-+ .|||+++.+.++....-
T Consensus 1237 ~FsP~D-~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1237 HFSPCD-TLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred ccCCCc-ceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCccc-
Confidence 999987 5554 345 57999987 5666665443222 22466 677777665 38999999888776533
Q ss_pred ceeeeEEEEEecCCCeEEEe
Q 017773 275 NNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~ 294 (366)
...++.|+..|..++..
T Consensus 1303 ---dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 ---DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ---cceEEEeccCccchhhh
Confidence 34455666778776554
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=5.7e-10 Score=99.75 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=145.6
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-cEEE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-TMQM 169 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-~v~~ 169 (366)
..+..|....+|++|+.+ .+.|+.|+..|.|+++++.+|........|.. +|+-+.-+.+|..++.+++... -..+
T Consensus 1095 ~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCcccccccccccc-ccccccccCCcceeeeeccccCchHHH
Confidence 345567788999999998 89999999999999999999999999999988 9999999999998866655555 5789
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE-eec---ccCcEEEEEEc-CC
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV-FDG---HRKTVTYIRFL-DV 244 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~---~~~~v~~~~~~-~~ 244 (366)
|++.. .+.+.+.+. .-.++.|+... ..-+.|+......+||+.+. .++.+ +.+ .+..-++..|+ ..
T Consensus 1172 W~~~s-~~~~~Hsf~------ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1172 WDASS-TGGPRHSFD------EDKAVKFSNSL-QFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred hcccc-ccCcccccc------ccceeehhhhH-HHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCc
Confidence 99983 455666654 44578888764 45556666678899999998 44444 322 22233566777 44
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 245 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.+++ .|| .+||++..+.++.|....... .=.|+|+|..++.-++ |||+++.+.+..+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~---~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFTDYG---GGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhheecc---cccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 4443 244 489999998888876544221 1226699999988765 9999988766443
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=7.8e-07 Score=70.07 Aligned_cols=208 Identities=14% Similarity=0.134 Sum_probs=117.9
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCC----CcEEEEEcC
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTS----GRVLGSGDY 119 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~ 119 (366)
.=+.++||||+.+||.+...|+|++||+.....-. +.. ... ....-...|..|.|.+... ...|++-..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I~p--~~~----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-IPP--AMS----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEE-cCc--ccc----cCCccccceeeeEeeccccccccceeEEEEec
Confidence 35789999999999999999999999987633211 111 000 0011134677787765410 124555566
Q ss_pred CCcEEEEeCCCC-----ce--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 120 DGVVMEYDLEKK-----VP--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 120 dg~i~iw~~~~~-----~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
+|.++-|-+..+ +. ...+..|....|.++.|+|..+.|++.|.....-..+. .....+
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~---------------a~~~GL 182 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK---------------ASSCGL 182 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc---------------ccccCc
Confidence 888877765321 22 22333444448999999998887766555543211110 111122
Q ss_pred EEEEEcCCCCcEEE-EEecCCe------EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 193 CCVEFHPFGSSLVA-AGCADKK------AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 193 ~~~~~~~~~~~~l~-~~~~d~~------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
++-..-.+.+.+.. +...|+. -.+|.+-+. +...........|..|..+ ++..|++...+|.|.+|++.+.
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 22222222111111 1111111 122322211 1111112345789999999 9999999999999999999988
Q ss_pred ceeeeeeccc
Q 017773 265 RVIRTYKGHV 274 (366)
Q Consensus 265 ~~~~~~~~~~ 274 (366)
++...+..+.
T Consensus 262 ~~~~~W~~~e 271 (282)
T PF15492_consen 262 RLQRSWKQDE 271 (282)
T ss_pred hhhcccchhh
Confidence 7777766443
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.2e-06 Score=75.04 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=116.6
Q ss_pred ceeEEEEecCCCCcE-EEEEcC---CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeC
Q 017773 99 KLSSLKWKPGTSGRV-LGSGDY---DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDP 172 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~ 172 (366)
....-.|+|+ |+. ++..+. +..|.++|+.+++...... ..+ ......|+|+|+.++++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 4678999999 874 554332 4579999998887555443 332 566788999999887766555 45777787
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
. .++. ..+.. +........|+|+|+.++++....+ .|+++|+.++ +. ..+..... ....|+ +++.++.
T Consensus 265 ~--~g~~-~~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~~-~rlt~~g~--~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 265 N--TKTL-TQITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-SV-EQVVFHGK--NNSSVSTYKNYIVY 335 (419)
T ss_pred C--CCcE-EEccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-Ce-EeCccCCC--cCceECCCCCEEEE
Confidence 6 4443 33331 1112334589999966666654444 5888888775 23 22221111 124788 8888876
Q ss_pred EeCC---------CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeec
Q 017773 250 AGTD---------GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRW 307 (366)
Q Consensus 250 ~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 307 (366)
.+.. ..|.+.|+.++.. ..+.... .... .+|+|||+.++....+ ..|.+.++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~--p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQF--PRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCC--eEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 6643 3688888877754 3443322 2122 4455999987755432 2356666653
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=6e-08 Score=86.20 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=129.3
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..++|++++ ++.|+-|+.+|.|++.+.+..- .+...|.. . ...|.++ ++|+.||+|.+..+- +.
T Consensus 40 D~is~~av~----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~-~------~~~Gey~-asCS~DGkv~I~sl~--~~ 103 (846)
T KOG2066|consen 40 DAISCCAVH----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSS-S------ILEGEYV-ASCSDDGKVVIGSLF--TD 103 (846)
T ss_pred hHHHHHHhh----cceeeeccccceEEEEecCCcc--cccccccc-c------ccCCceE-EEecCCCcEEEeecc--CC
Confidence 347777777 6799999999999999876543 33334432 1 5568887 999999999999988 45
Q ss_pred ceeEeecCCCCCCCeEEEEEcCC----CCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEcCCCEEEEEeC
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPF----GSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
+....+.... ++.+++++|+ ..+.+++|+..| +.++.-+-.+.... .+....++|.++.|. |++++-++.
T Consensus 104 ~~~~~~df~r---piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~-g~lIAWand 178 (846)
T KOG2066|consen 104 DEITQYDFKR---PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR-GNLIAWAND 178 (846)
T ss_pred ccceeEecCC---cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-CcEEEEecC
Confidence 5444444333 8999999998 236789998888 77776543322222 355667899999994 678888887
Q ss_pred CCcEEEEecCCCceeeeeecccceeee----EEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHVNNRNF----VGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+| |++||..+++.+..++.....++. ..+.| .+...|+.|=. .+|+|..++.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W-~~~~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHW-QDEDRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEe-cCCCeEEEecC-CeEEEEEEec
Confidence 77 899999998888777654333221 12223 24455666643 4788888873
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.9e-08 Score=80.20 Aligned_cols=254 Identities=13% Similarity=0.068 Sum_probs=165.0
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC--C-ceeEeeecCCCCceeeEEeccCCCceEEEecC-CCcEEEee
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK--K-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSD-DGTMQMWD 171 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d 171 (366)
|...|+.+.-.. .+++.+++.||.++.|.... + +.+..+..|-. .|.+++.+-++..+ .+.+. |..++++|
T Consensus 8 hrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~-~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLF-RSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh---hheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeE-eeccCcccceeEEE
Confidence 445566665554 68999999999999997654 1 33445556665 78888888776655 88666 99999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCC-cEEEE-EecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEc-CCCEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGS-SLVAA-GCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~-~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l 247 (366)
+. +...+..++...-++.+.. ..+|... ..+++ ...++.+.++|-+... +....-.-|..+|..+.++ -++.+
T Consensus 83 vE--n~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 83 VE--NFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred ee--ccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 98 4544444443332223322 2233211 23333 3467899999988764 3344445699999999998 78889
Q ss_pred EEEeCCCcEEEEecCC------Cceeeeee---------cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 248 VTAGTDGCLKLWNVND------SRVIRTYK---------GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
++....|.|.-|.... .+....++ -......++. ++|++..+.+-+.|..|+++++.+|+.+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E--fsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE--FSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE--EccccCcccccCcccEEEEEEeccchhhh
Confidence 9999999999998762 11111111 1122233444 45999999999999999999999988766
Q ss_pred EEecccc------------------------cccCCCC-ceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 313 VHDFEPV------------------------TAAGSER-GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 313 ~~~~~~~------------------------~~~~~~~-~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.++-... ..+..|. ..-+.+.|.. .|++|+-++-=| |++.++.+..+
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde---s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE---SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC---CCCEEEeeccee-EEEEEeecCeE
Confidence 5421110 0011122 2234566666 667888887766 78888876543
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=5.9e-08 Score=86.83 Aligned_cols=302 Identities=15% Similarity=0.170 Sum_probs=169.2
Q ss_pred CCCccCCCCCcccccccceeeeeecCCCceeeecCCCCcc-----------------CCCceEEEEECCCCCEEEEeecC
Q 017773 1 MSNFHDHQQPQAETTNERARCEWDFNLRTTVSSSSSPNAA-----------------VSDSIGVIEFDPSDSVFATGGIA 63 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-----------------h~~~i~~~~~s~~~~~l~t~~~d 63 (366)
|.+|.|++-.......-.++..|+|....++...-.+..+ -+-.+++++|+|..-.|+.|-.-
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcccc
Confidence 7899999988888888899999999988877665443322 12235679999998889999888
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEe--eecCC
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFE--RDEHG 141 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~ 141 (366)
|.+.+|...+.+... ....|+.+|..+.|+|+ |..|.++..-|.|.+|...-...+.. +-.|.
T Consensus 81 g~~~v~~~~~~e~ht-------------v~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~he 145 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHT-------------VVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHE 145 (1416)
T ss_pred ceeEEEecCCceeee-------------eccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeeeccccccchhhhhH
Confidence 999999876543221 23346788999999999 99999999999999998763221111 11111
Q ss_pred -C--CceeeEEeccCCCce-----EEEecCCCcEE-EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 142 -G--RRVWSVDYSKGDPVL-----GASGSDDGTMQ-MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 142 -~--~~v~~i~~~~~~~~l-----~~~~~~dg~v~-~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
+ -...|...++++..+ +++.+++..+- .++.+ ......... + .-.|+| ..++.++.+|
T Consensus 146 l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk--~~~a~rs~~---k-------sgv~~g-~~F~~~~~~G 212 (1416)
T KOG3617|consen 146 LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWK--ESLAERSDE---K-------SGVPKG-TEFLFAGKSG 212 (1416)
T ss_pred hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCc--cchhhcccc---c-------cCCCCC-cEEEEEcCCc
Confidence 0 123444455553222 12333333332 34333 111111111 1 123666 6777778999
Q ss_pred eEEEEecCCCCCCeeEee--------cccCcEEEEEEc-CCCEEE------------------EEeCCCcEEEEecCCCc
Q 017773 213 KAYAYDVRKMVDPVLVFD--------GHRKTVTYIRFL-DVDTLV------------------TAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 213 ~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~-~~~~l~------------------~~~~d~~i~iwd~~~~~ 265 (366)
+|+-.|-......+.... +....|..+.-. ...++. .|+..|.|.+=.. .|-
T Consensus 213 tVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGv 291 (1416)
T KOG3617|consen 213 TVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGV 291 (1416)
T ss_pred eEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-ccc
Confidence 998888554322222111 112222222111 111111 1111111111110 010
Q ss_pred e--eeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC----ce---EEEEecccccccCCCCceeeEEEee
Q 017773 266 V--IRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG----EP---VWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 266 ~--~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~---~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
+ -..+- .....+.+++.+ ..+..|..|...|.+.+|.-... .+ .+.+. ....-.+.|+.+.|.
T Consensus 292 Lr~~eKyg~e~ge~~~c~cY~--~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~-----~~~e~~g~I~~i~Wg 364 (1416)
T KOG3617|consen 292 LRKSEKYGLELGEGILCMCYG--EKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLN-----GKRESLGKISLIRWG 364 (1416)
T ss_pred ccCCcchhhhcCCceEEEEEe--ccceEEEecccCCcEEEeeecCccccCCCCcceEEec-----CchhhccceEEEEec
Confidence 0 00010 012345566665 88999999999999999964322 22 22221 113345779999999
Q ss_pred ccC
Q 017773 336 RVG 338 (366)
Q Consensus 336 ~~~ 338 (366)
|..
T Consensus 365 ~~k 367 (1416)
T KOG3617|consen 365 PIK 367 (1416)
T ss_pred ccc
Confidence 844
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.8e-07 Score=83.33 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=128.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
..+.++|++++ +++|+-|+.+|.|++.+.+... . ....|. .. .- +|.++++|+.|
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s----------~~------~~--~Gey~asCS~D 92 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHS----------SS------IL--EGEYVASCSDD 92 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccc----------cc------cc--CCceEEEecCC
Confidence 46778888887 6789999999999999876532 1 111221 11 33 39999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccC-----CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG-----DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
|+|.|-.+.+.+....+..+. ++.+++++|+ .+.+ ++|+.-| +.++.-+- .............++|.++
T Consensus 93 Gkv~I~sl~~~~~~~~~df~r--piksial~Pd~~~~~sk~f-v~GG~ag-lvL~er~w--lgnk~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYDFKR--PIKSIALHPDFSRQQSKQF-VSGGMAG-LVLSERNW--LGNKDSVVLSEGEGPIHSI 166 (846)
T ss_pred CcEEEeeccCCccceeEecCC--cceeEEeccchhhhhhhhe-eecCcce-EEEehhhh--hcCccceeeecCccceEEE
Confidence 999999999888777776665 8999999998 4455 8998888 77776441 1111122233566799999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC------cEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK------TVTYIRFLDVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~l~~~~~d~~i~iwd~~~ 263 (366)
.|.. +++|-++.+| |++||+.+. +.+..+..... --..+.|.+...|+.|=.| +|++..++.
T Consensus 167 ~W~g---~lIAWand~G-v~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 167 KWRG---NLIAWANDDG-VKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred EecC---cEEEEecCCC-cEEEecccc-ceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEec
Confidence 9983 6888886555 899999886 33333332212 2345777766777777544 588888773
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.4e-06 Score=76.95 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=129.3
Q ss_pred EEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-----cEEEeeCCCCC--
Q 017773 104 KWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-----TMQMWDPRCDG-- 176 (366)
Q Consensus 104 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-----~v~~~d~~~~~-- 176 (366)
+|++. +..++.|+.+|.|.+.+- .-+.+..++.+..+-|..+... +++.++++.+.|+ .+++||++.-.
T Consensus 30 c~~s~--~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSS--TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCC--CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 45666 889999999998877653 2233466777766324444333 3433446655554 48999998421
Q ss_pred --Ccee---Eeec--CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecC---CCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 177 --GKCV---STVQ--PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR---KMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 177 --~~~~---~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
..++ +.+. .+....++.+++.+.+- +.+++|-.+|.|..+.-+ .......-......+|+.+++. ++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 2233 1121 22345688999999986 899999999999998642 2112222223346799999998 777
Q ss_pred EEEEEeCCCcEEEEecCCCce-eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 246 TLVTAGTDGCLKLWNVNDSRV-IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
.++-...-..|.+|.+....+ ...+..|..+..|.+++ +....+++++. ..|.+|+....++.+.+.
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~--~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS--DGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecC--CCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 634344456799999884442 34466676666666665 44333555443 479999998777766664
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=2.8e-05 Score=63.30 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=140.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCc-EEEEeCCCCceeEeeecCCCCcee-eEEeccCCCceEEE----ecCCCcEEEeeC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGV-VMEYDLEKKVPIFERDEHGGRRVW-SVDYSKGDPVLGAS----GSDDGTMQMWDP 172 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~----~~~dg~v~~~d~ 172 (366)
....++.+|. ....++.+-.-|+ ..+||..+++....+....++--+ .-.|+++|+.|+++ ....|.|-+||.
T Consensus 6 RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3556778884 2566666666554 678899999887777655442222 46799999998544 233578999999
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe------------------cCCeEEEEecCCCCCCeeE--e--e
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC------------------ADKKAYAYDVRKMVDPVLV--F--D 230 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~--~--~ 230 (366)
. ...+.+..+. .+.-....+.+.|+| ..|+++. .+-++...|.+++ +.+.. + .
T Consensus 85 ~-~~~~ri~E~~--s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~ 159 (305)
T PF07433_consen 85 A-RGYRRIGEFP--SHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPD 159 (305)
T ss_pred c-CCcEEEeEec--CCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCcc
Confidence 8 3456666666 444477889999998 4555441 1223445555555 34443 3 2
Q ss_pred cccCcEEEEEEc-CCCEEEEEeCCCc-------EEEEecCCCceeeeeec-------ccceeeeEEEEEecCCCeEE-Ee
Q 017773 231 GHRKTVTYIRFL-DVDTLVTAGTDGC-------LKLWNVNDSRVIRTYKG-------HVNNRNFVGLSVWRHGGLLG-CG 294 (366)
Q Consensus 231 ~~~~~v~~~~~~-~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~-~~ 294 (366)
.|+-.+..+++. ++..++..-..|. |-+++. ++.+..+.. -.+.+-+++++ +++.+++ |+
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~--~~g~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAAD--RDGRLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEe--CCCCEEEEEC
Confidence 366788889888 6555444433331 333332 222222221 12344455555 8888775 44
Q ss_pred cCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC
Q 017773 295 SETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD 350 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 350 (366)
-..+.+.+||..+++.+....+ ..+..++-.+ ++ ++++.+.-
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l----------~D~cGva~~~---~~-f~~ssG~G 277 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPL----------PDACGVAPTD---DG-FLVSSGQG 277 (305)
T ss_pred CCCCEEEEEECCCCCEeecccc----------CceeeeeecC---Cc-eEEeCCCc
Confidence 5678999999999998876543 2356666665 55 66665543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.1e-06 Score=77.38 Aligned_cols=212 Identities=14% Similarity=0.142 Sum_probs=133.4
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCc-eeEEEEecCCCCcEEEEEcCCC-
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAK-LSSLKWKPGTSGRVLGSGDYDG- 121 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg- 121 (366)
.|+| |++.+..+|.|+.+|.|.+.+-.-.. .. .+ .+++.. |..+..... ..+|++.+.|+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~-~~---~f----------qa~~~siv~~L~~~~~--~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQL-IR---GF----------QAYEQSIVQFLYILNK--QNFLFSVGEDEQ 88 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccccee-ee---hh----------eecchhhhhHhhcccC--ceEEEEEeecCC
Confidence 4554 57778899999999988887643211 01 11 222233 333333332 46777776654
Q ss_pred ----cEEEEeCCCC------ceeE--eeec---C-CCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC
Q 017773 122 ----VVMEYDLEKK------VPIF--ERDE---H-GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP 185 (366)
Q Consensus 122 ----~i~iw~~~~~------~~~~--~~~~---~-~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~ 185 (366)
.+++|+++.- .++. .+.. . ...++.+++.+.+-..+ ++|-.+|.|..+.-..-..+-.+..-.
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~I-v~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTI-VCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEE-EEEecCcEEEEEcCcchhccccceeee
Confidence 5899998743 2221 1111 1 23478899999886665 999999999988533111111122222
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCE-EEEEeCCCcEEEEecCCC
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDT-LVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~iwd~~~~ 264 (366)
.....+|+.+++..++...++++ ....|.+|.+.........+..|..+++|..++++.. |++++ +..+.+||....
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 24566999999998885433333 4567899999865323455777888999999985444 55554 456999999887
Q ss_pred ceeeeee-cccce
Q 017773 265 RVIRTYK-GHVNN 276 (366)
Q Consensus 265 ~~~~~~~-~~~~~ 276 (366)
.+...+. +|...
T Consensus 246 ~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 246 GPCFAFEVGEKKE 258 (933)
T ss_pred ceeeeecCCCeEE
Confidence 7777887 66543
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.81 E-value=3.5e-06 Score=78.74 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=136.7
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..|.++.|..+ ...++.+...|.|.+-|.++..... -+.....|.+++|+|+++.+ +..+..+++.+.+-. .
T Consensus 69 ~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~Dee~l-~liT~~~tll~mT~~---f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLAD--TNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDEELL-ALITGRQTLLFMTKD---F 140 (1265)
T ss_pred cceEEEEEecc--cceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCCcEE-EEEeCCcEEEEEecc---c
Confidence 46999999998 8888888889999999887765332 23333389999999999887 666666666654432 3
Q ss_pred ceeEeecCCC---CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe--
Q 017773 178 KCVSTVQPSA---SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-- 251 (366)
Q Consensus 178 ~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-- 251 (366)
.++....... ..+..-.+-|-... .. +-| ..|.....+.....+......-+ ..=+.+.|- +|++|++..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke-Tq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE-TQ-FRG-SEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc-ee-eec-chhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEe
Confidence 3333222211 11122233333221 01 111 11222111111111111111112 223568898 999988843
Q ss_pred --CC-CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec---CCCeEEEEEeecCceEEEEecccccccCCC
Q 017773 252 --TD-GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS---ETNQVFVYDVRWGEPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 252 --~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 325 (366)
.+ ..|++||.. +.+-..-....+.-.+++|- |.|..+++-. .|+.|.+|.- +|-....+.++. +..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWk--Psgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~----p~d 288 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWK--PSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPF----PLD 288 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeec--CCCCeEeeeeecCCCCcEEEEec-CCccccccccCC----ccc
Confidence 33 789999976 43322222222222356666 9999988753 4567888874 344443333221 223
Q ss_pred CceeeEEEeeccCCCceEEEE---eCCCCcEEEEEecc
Q 017773 326 RGFVSSVCWRRVGEDECTLVA---GGSDGLLHVFVGKK 360 (366)
Q Consensus 326 ~~~v~~~~~~~~~~~~~~l~s---~~~dg~i~iw~~~~ 360 (366)
...|..++|+. ++..||. ......|++|-..+
T Consensus 289 e~~ve~L~Wns---~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 289 EKEVEELAWNS---NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccchheeeecC---CCCceeeeecccccceEEEEEecC
Confidence 44599999999 6668887 55566699998754
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=2.3e-07 Score=83.78 Aligned_cols=181 Identities=19% Similarity=0.275 Sum_probs=130.6
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI 134 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 134 (366)
..++-|+-...+..+|+.+.+..+. ..- ..+.|+-|..+ ++.+++|...|+|.+-|+.+.+.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v----------~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~i 210 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT---TNV----------SASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETI 210 (1118)
T ss_pred cceeecchhhheeeeecccceeeee---eec----------cCCceEEEEec----CcEEEeecccceEEeecCCcCcee
Confidence 3455566666666777766544331 000 01235555544 789999999999999999999999
Q ss_pred EeeecCCCCceeeEEeccCCCceEEEecC---------CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE
Q 017773 135 FERDEHGGRRVWSVDYSKGDPVLGASGSD---------DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205 (366)
Q Consensus 135 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 205 (366)
.++..|.+ .|.++... |+.| ++++. |..|++||++ ..+.+..+.... ...-+.|+|.-...+
T Consensus 211 ht~~aHs~-siSDfDv~--GNlL-itCG~S~R~~~l~~D~FvkVYDLR--mmral~PI~~~~---~P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 211 HTFDAHSG-SISDFDVQ--GNLL-ITCGYSMRRYNLAMDPFVKVYDLR--MMRALSPIQFPY---GPQFLRFHPSLTTRL 281 (1118)
T ss_pred eeeecccc-ceeeeecc--CCeE-EEeecccccccccccchhhhhhhh--hhhccCCccccc---CchhhhhcccccceE
Confidence 99999998 78777664 6766 66654 4568999999 666666555433 346678999877889
Q ss_pred EEEecCCeEEEEecCCCCCC---eeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 206 AAGCADKKAYAYDVRKMVDP---VLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 206 ~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
++.+..|...+-|..+..++ +..+......+..++++ +++.++.+..+|.|.+|.-
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 99999999999994443233 33334444568899998 9999999999999999973
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.7e-07 Score=81.95 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=115.8
Q ss_pred eEEEEECCCCCEEEEee----cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 45 IGVIEFDPSDSVFATGG----IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-+-.+|+|...++|+++ ..|.|.||-- +++. .+..+.. -.+++++|+|. .-.|+.|-.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEP-qr~Vt~P-------------~hatSLCWHpe--~~vLa~gwe~ 80 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEP-QRDVTYP-------------VHATSLCWHPE--EFVLAQGWEM 80 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec-CCCC-Ccccccc-------------eehhhhccChH--HHHHhhcccc
Confidence 34567999999999886 3578998853 3331 1111111 13678999998 8889999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC----CCCeEEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS----RSAVCCVE 196 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~----~~~i~~~~ 196 (366)
|.+.+|...+.+.-.....|.. +|..+.|+++|..+ +++..-|.|.+|.... ...+.....-.| .-...|..
T Consensus 81 g~~~v~~~~~~e~htv~~th~a-~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d~--~g~~q~~~~~~hel~~~ltl~cfR 156 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPA-PIQGLDWSHDGTVL-MTLDNPGSVHLWRYDV--IGEIQTSNIMQHELNDQLTLWCFR 156 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCC-CceeEEecCCCCeE-EEcCCCceeEEEEeee--ccccccchhhhhHhhceeeEEEEe
Confidence 9999999887765555556665 99999999999988 9999999999998762 122221111111 11334555
Q ss_pred EcCCCCc-----EEEEEecCCeEE-EEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEec
Q 017773 197 FHPFGSS-----LVAAGCADKKAY-AYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 197 ~~~~~~~-----~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~ 261 (366)
.++++.. ..++.+.+.-+- .++.+.. . -.......-..+|..|+.++.+|+|+--|-
T Consensus 157 L~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~--~------a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq 219 (1416)
T KOG3617|consen 157 LSYDREEKFKLAKAAVTGDESALDEPFNWKES--L------AERSDEKSGVPKGTEFLFAGKSGTVYYVDQ 219 (1416)
T ss_pred cCCChHHhhhhhhhhccCchhhhcccccCccc--h------hhccccccCCCCCcEEEEEcCCceEEEEcC
Confidence 6666321 123333333222 3322211 0 001111111226778888899998887773
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-06 Score=71.67 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=140.5
Q ss_pred ccCCCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.+|...|..++|||..+ ++..++.+..|+|.|+++..... ....+ ..+.+++|.-+ +..++..|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-----------~~~wSC~wDld-e~h~IYaG 254 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-----------NQIWSCCWDLD-ERHVIYAG 254 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-----------CCceeeeeccC-CcceeEEe
Confidence 34788899999999887 78889999999999998865433 22222 46999999988 47899999
Q ss_pred cCCCcEEEEeCCCCc-eeEeeec-CCCCceeeEEeccC------CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 118 DYDGVVMEYDLEKKV-PIFERDE-HGGRRVWSVDYSKG------DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~-~~~~~~~-~~~~~v~~i~~~~~------~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
..+|.|.+||+...+ +..++.. -...+|..++.-+- +..+ +.... .+..|.+....+.....++. +..
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglL-v~~lt--~l~f~ei~~s~~~~p~vlel-e~p 330 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLL-VFALT--VLQFYEIVFSAECLPCVLEL-EPP 330 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceE-Eeeeh--hhhhhhhhccccCCCccccc-CCC
Confidence 999999999997653 2222222 11125555554332 3332 33322 36677766322222222222 234
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCe------EEE-EecCCCCCCee-Eeecc-cCcE-----EEEEE-c-CCCEE-EEEeC
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKK------AYA-YDVRKMVDPVL-VFDGH-RKTV-----TYIRF-L-DVDTL-VTAGT 252 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~------i~i-~d~~~~~~~~~-~~~~~-~~~v-----~~~~~-~-~~~~l-~~~~~ 252 (366)
+...++++++..+.++++.-.+.+ +-. -|.+.+ .++. .-..+ ...- +...+ . +.+++ .++..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 467778888765456665533210 111 111111 1111 11111 0000 01111 1 33444 45556
Q ss_pred CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.+.+.+||..+.+.++++... .++..++..-..-+.+|++-. |..++||..+
T Consensus 410 tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 678999999999999988754 455444433112334666554 5678887644
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=3.3e-08 Score=54.83 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=30.3
Q ss_pred CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 323 GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 323 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.+|.+.|++|+|+| ++.+|++++.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 67999999999999 788999999999999997
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.72 E-value=6.9e-05 Score=61.86 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=149.7
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc----------CCCcEEEEeCCCCce
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD----------YDGVVMEYDLEKKVP 133 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~ 133 (366)
+.+.++|.++++.+..... +-.-.+..+|+ ++.++++. ..-.|.+||..+-.+
T Consensus 17 ~rv~viD~d~~k~lGmi~~---------------g~~~~~~~spd--gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT---------------GFLGNVALSPD--GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE---------------ESSEEEEE-TT--SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred ceEEEEECCCCcEEEEeec---------------ccCCceeECCC--CCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 4688888776554331111 12334667888 88877642 345799999999887
Q ss_pred eEeeecCCCC------ceeeEEeccCCCceEEE-ecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEE
Q 017773 134 IFERDEHGGR------RVWSVDYSKGDPVLGAS-GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVA 206 (366)
Q Consensus 134 ~~~~~~~~~~------~v~~i~~~~~~~~l~~~-~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 206 (366)
..++....+. ....++++.+++++++. .+-...|.+.|+. ..+.+..+..++ |...-|.++.-+.
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~--~~kvv~ei~~PG------C~~iyP~~~~~F~ 151 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLA--AKKVVGEIDTPG------CWLIYPSGNRGFS 151 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETT--TTEEEEEEEGTS------EEEEEEEETTEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECC--CCceeeeecCCC------EEEEEecCCCceE
Confidence 7766544321 12235666677766332 2234467777877 677777776543 3333455555677
Q ss_pred EEecCCeEEEEecCCCCCCeeEe----ecccCcEE-EEEEc-CCCEEEEEeCCCcEEEEecCCCce--eeeeecc-----
Q 017773 207 AGCADKKAYAYDVRKMVDPVLVF----DGHRKTVT-YIRFL-DVDTLVTAGTDGCLKLWNVNDSRV--IRTYKGH----- 273 (366)
Q Consensus 207 ~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~----- 273 (366)
+-|.||++.-..+....+...+. .....++. .-++. .+..++--+.+|.|+--|+..... ...+..-
T Consensus 152 ~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 152 MLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence 88899999999998654554322 11122222 23344 445566677889888888865532 2222210
Q ss_pred -----cceeeeEEEEEecCCCeEEEec---C-----CC--eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 274 -----VNNRNFVGLSVWRHGGLLGCGS---E-----TN--QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 274 -----~~~~~~~~~~~~~~~~~l~~~~---~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
.+.-..+++. +..+.|+.-- . |+ .|-++|+.+++.+..+.++ .++.+|+.+...
T Consensus 232 ~~~WrPGG~Q~~A~~--~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYH--AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPIDSIAVSQDD 300 (342)
T ss_dssp HTTEEE-SSS-EEEE--TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEESEEEEESSS
T ss_pred ccCcCCcceeeeeec--cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------CccceEEEccCC
Confidence 0111234443 5444444321 1 22 4777788899988887653 457899998732
Q ss_pred CCceEEE-EeCCCCcEEEEEecccCC
Q 017773 339 EDECTLV-AGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 339 ~~~~~l~-s~~~dg~i~iw~~~~~~l 363 (366)
.-+|+ ....++.|.+||..++++
T Consensus 301 --~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 301 --KPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp --S-EEEEEETTTTEEEEEETTT--E
T ss_pred --CcEEEEEcCCCCeEEEEeCcCCcE
Confidence 12554 445689999999988653
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=1.6e-08 Score=87.54 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=128.6
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEec----CCCcEEEeeCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGS----DDGTMQMWDPR 173 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~----~dg~v~~~d~~ 173 (366)
.+.|+++.-+.+...++.|..+|.|.+-.+....-. .++.....++.++++|++-+...+|+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 477888776533568899999999999887654322 3333333348999999997665546653 35679999998
Q ss_pred CCCCceeEeecCC-CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEEE
Q 017773 174 CDGGKCVSTVQPS-ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVTA 250 (366)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~ 250 (366)
..-..+....... +......+++|..+. +++.+|.....+.++|+|........+ ....+..+... .++++++.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 3200222222111 133456688998765 899999999999999999542222222 23344555555 56777766
Q ss_pred eCCCcEEEEe-cCCC-ceeeeeecccc----eeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 251 GTDGCLKLWN-VNDS-RVIRTYKGHVN----NRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 251 ~~d~~i~iwd-~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
. ||.|.+|| .++- .++..+..... .+..+++++...|...+..-..+.|+.+|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 99999999 3332 33333332222 2566777754455555555566889999985
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.71 E-value=4.3e-05 Score=68.81 Aligned_cols=281 Identities=14% Similarity=0.146 Sum_probs=156.7
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCcee--EEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLS--SLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
+..+..++.++.|.-.|..+++............. ....+. .+.... +..++.++.++.|.-+|.+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~-------~~~~~~~~g~~~~~---~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADR-------GCCDVVNRGVAYWD---PRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccc-------cccccccCCcEEcc---CCeEEEecCCCeEEEEECCCC
Confidence 34566667789999999988876552211111000 000010 111111 267888888999999999999
Q ss_pred ceeEeeecCCCC----cee-eEEeccCCCceEEEec---------CCCcEEEeeCCCCCCceeEeecCCCCC--------
Q 017773 132 VPIFERDEHGGR----RVW-SVDYSKGDPVLGASGS---------DDGTMQMWDPRCDGGKCVSTVQPSASR-------- 189 (366)
Q Consensus 132 ~~~~~~~~~~~~----~v~-~i~~~~~~~~l~~~~~---------~dg~v~~~d~~~~~~~~~~~~~~~~~~-------- 189 (366)
+.+......... .+. ...+. +..+ +.++ .+|.+.-+|.. +++.+.........
T Consensus 131 ~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v-~vg~~~~~~~~~~~~g~v~alD~~--TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 131 KQVWKFGNNDQVPPGYTMTGAPTIV--KKLV-IIGSSGAEFFACGVRGALRAYDVE--TGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred CEeeeecCCCCcCcceEecCCCEEE--CCEE-EEeccccccccCCCCcEEEEEECC--CCceeeEeeccCCCcCCCCCCC
Confidence 988776544310 011 11222 2333 4443 36788888988 77777766542110
Q ss_pred ----------CCe-EEEEEcCCCCcEEEEEecCC------------------eEEEEecCCCCCCeeEee-c-cc-----
Q 017773 190 ----------SAV-CCVEFHPFGSSLVAAGCADK------------------KAYAYDVRKMVDPVLVFD-G-HR----- 233 (366)
Q Consensus 190 ----------~~i-~~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~-~-~~----- 233 (366)
..+ ...++.+.+ ..++.++.++ .|.-+|.+++ +.+-.+. . |.
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccc
Confidence 000 123444444 4677776554 7999999888 4443332 1 11
Q ss_pred ---CcE-EEEEEcCCC---EEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEE-------------
Q 017773 234 ---KTV-TYIRFLDVD---TLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC------------- 293 (366)
Q Consensus 234 ---~~v-~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 293 (366)
.++ ..+.-.++. .++.++.+|.+...|.++++.+-....... .++.. | ..++.
T Consensus 284 ~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~--~--~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 284 GPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYD--P--GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred cCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---ccccC--C--ceEEEccccccccCcccc
Confidence 111 111101232 678888999999999999998876643211 11222 3 22222
Q ss_pred -----ecCCCeEEEEEeecCceEEEEecccccccCCCCcee--eEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 294 -----GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFV--SSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 294 -----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
...+|.|.-.|+.+|+.++............-..+. ..++. .+..|+.++.||.|+.+|.+++++
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECCCCeEEEEECCCCce
Confidence 224688999999999999887643100000000111 11222 345788888999999999887654
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=6.3e-08 Score=53.64 Aligned_cols=39 Identities=31% Similarity=0.624 Sum_probs=36.0
Q ss_pred CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 264 SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
++++.++++|...|..+++. |++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~--~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS--PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence 36788999999999999888 9999999999999999997
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.66 E-value=1.7e-05 Score=69.37 Aligned_cols=223 Identities=14% Similarity=0.091 Sum_probs=117.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
..-....+.++|+|++++.++ ||...|+....... .. .+.-....|.+. ++ +|+-...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~-----k~-------------~G~g~~~vw~~~--n~-yAv~~~~ 88 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN-----KA-------------FGSGLSFVWSSR--NR-YAVLESS 88 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-----EE-------------EEE-SEEEE-TS--SE-EEEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-----cc-------------cCceeEEEEecC--cc-EEEEECC
Confidence 344578999999999999955 78888887322111 00 123567889885 55 5555558
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
++|.++.--+......+.... .+..|-. |..| ...+ ++.|.+||+. +++.+..+... +|..+.|+++
T Consensus 89 ~~I~I~kn~~~~~~k~i~~~~--~~~~If~---G~LL-~~~~-~~~i~~yDw~--~~~~i~~i~v~----~vk~V~Ws~~ 155 (443)
T PF04053_consen 89 STIKIYKNFKNEVVKSIKLPF--SVEKIFG---GNLL-GVKS-SDFICFYDWE--TGKLIRRIDVS----AVKYVIWSDD 155 (443)
T ss_dssp S-EEEEETTEE-TT-----SS---EEEEE----SSSE-EEEE-TTEEEEE-TT--T--EEEEESS-----E-EEEEE-TT
T ss_pred CeEEEEEcCccccceEEcCCc--ccceEEc---CcEE-EEEC-CCCEEEEEhh--HcceeeEEecC----CCcEEEEECC
Confidence 889996333333323333322 3444433 6665 4444 3489999999 88999998743 5899999999
Q ss_pred CCcEEEEEecCCeEEEEecCCC----------CCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKM----------VDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
| .+++..+. ..+++++.+.. ......+..-...|.+.+|.++ .|+-.... .++. +..|+ ...+
T Consensus 156 g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge-~~~i 228 (443)
T PF04053_consen 156 G-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGE-TGII 228 (443)
T ss_dssp S-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTE-EEEE
T ss_pred C-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCC-cceE
Confidence 8 67777654 46777665431 0133444433578889999743 55554444 6766 33443 2233
Q ss_pred ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 271 KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
..-..++..+... ++.+.+.....|+.+..+.+..
T Consensus 229 ~~ld~~~yllgy~--~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 229 AHLDKPLYLLGYL--PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-SS--EEEEEE--TTTTEEEEE-TT--EEEEE--H
T ss_pred EEcCCceEEEEEE--ccCCEEEEEECCCCEEEEEECH
Confidence 3234466677776 7778888888888888887754
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.66 E-value=2.4e-05 Score=67.52 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=140.3
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
.|+.+.|+++..-|++|...|.|.||.....+... .+.. .+-..+.+.+- ...++.-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~------~~~~---------~~~~~~~~~~~--------~~~~~~~ 59 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG------NREQ---------PPDLDYNFRRF--------SLNNSPG 59 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------------------S----------GGGSS-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC------ccCC---------CcccCcccccc--------cccCCCc
Confidence 48999999998889999999999999987643321 0000 00111111110 0001111
Q ss_pred EEEeCCC--------C-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC------CC
Q 017773 124 MEYDLEK--------K-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS------AS 188 (366)
Q Consensus 124 ~iw~~~~--------~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~------~~ 188 (366)
.+-|+.. + .+...+....+ +|++++.+.-| +++.|..+|.+.|.|++ ....+..-... ..
T Consensus 60 ~l~di~~r~~~~~~~gf~P~~l~~~~~g-~vtal~~S~iG--Fvaigy~~G~l~viD~R--GPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 60 KLTDISDRAPPSLKEGFLPLTLLDAKQG-PVTALKNSDIG--FVAIGYESGSLVVIDLR--GPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp SEEE-GGG--TT-SEEEEEEEEE---S--SEEEEEE-BTS--EEEEEETTSEEEEEETT--TTEEEEEEEGGG--T-SS-
T ss_pred ceEEehhhCCcccccccCchhheeccCC-cEeEEecCCCc--EEEEEecCCcEEEEECC--CCeEEeecccccccccccc
Confidence 2222221 1 23344444544 99999998544 55999999999999999 44444442221 23
Q ss_pred CCCeEEEEEcC-----CC--CcEEEEEecCCeEEEEecCC--CCCCe----eEeecccCcEEEEEE-c-C-C--------
Q 017773 189 RSAVCCVEFHP-----FG--SSLVAAGCADKKAYAYDVRK--MVDPV----LVFDGHRKTVTYIRF-L-D-V-------- 244 (366)
Q Consensus 189 ~~~i~~~~~~~-----~~--~~~l~~~~~d~~i~i~d~~~--~~~~~----~~~~~~~~~v~~~~~-~-~-~-------- 244 (366)
...++++.|.. ++ .-++++|+..|.+.+|.+.- ..... .....+.+++..+.. + + +
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS 214 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh
Confidence 44678888852 11 25788999999999998752 11111 111235566665542 2 1 1
Q ss_pred -----------CEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEE---ecCCCeEEEecCCCeEEEEEeecCce
Q 017773 245 -----------DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSV---WRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 245 -----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
.-++....+..++++...+.+..++.......+..+.+.. ...+..|++-..+|.|+++.+..-+.
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 1244444577899999988776655542222222233321 23577888889999999999999888
Q ss_pred EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 311 VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
+....+.. ..+...+....+++ +|..++-.+.. .+.++.
T Consensus 295 i~~~~l~~----~~d~~~~~~ssis~---~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 295 IKSVSLPP----PLDSRRLSSSSISR---NGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp EEEEE-SS-------HHHHTT-EE-T---TS-EEEE-SSS-EEEEEE
T ss_pred hhcccCCC----ccccccccccEECC---CCCEEEEeCcc-cEEEEE
Confidence 88776543 22334456677777 77676665543 344443
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=2.1e-05 Score=73.88 Aligned_cols=199 Identities=16% Similarity=0.224 Sum_probs=128.1
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
+.|.++.|..+++.++.+..+|.|.+-|..+.... ..+.. ...|.+++|+|+ ++.++..+..++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-----ivg~v---------d~GI~aaswS~D--ee~l~liT~~~t 132 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-----IVGNV---------DNGISAASWSPD--EELLALITGRQT 132 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-----eeeec---------cCceEEEeecCC--CcEEEEEeCCcE
Confidence 58999999999998999999999999877664331 12221 257999999999 999998888888
Q ss_pred EEEEeCC----C-------------------CceeEeeecCCC--------------------CceeeEEeccCCCceEE
Q 017773 123 VMEYDLE----K-------------------KVPIFERDEHGG--------------------RRVWSVDYSKGDPVLGA 159 (366)
Q Consensus 123 i~iw~~~----~-------------------~~~~~~~~~~~~--------------------~~v~~i~~~~~~~~l~~ 159 (366)
+.+..-. . |+....+.+..+ ..=+.|.|--+|+++ +
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f-A 211 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF-A 211 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE-E
Confidence 7765431 0 111111211110 012358899889887 5
Q ss_pred E-----ecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe---cCCeEEEEecCCCCC--CeeEe
Q 017773 160 S-----GSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC---ADKKAYAYDVRKMVD--PVLVF 229 (366)
Q Consensus 160 ~-----~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~ 229 (366)
+ ....+.+++||-+ +..-..-. ...+.-.+++|-|.| ..+++-. .|+.|.+|.-+.... ....+
T Consensus 212 Vs~~~~~~~~RkirV~drE---g~Lns~se--~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE---GALNSTSE--PVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF 285 (1265)
T ss_pred EEEEeccCCceeEEEeccc---chhhcccC--cccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCC
Confidence 4 2223789999976 22222211 122244689999988 6776643 456788887654311 12223
Q ss_pred ecccCcEEEEEEc-CCCEEEE---EeCCCcEEEEecCCC
Q 017773 230 DGHRKTVTYIRFL-DVDTLVT---AGTDGCLKLWNVNDS 264 (366)
Q Consensus 230 ~~~~~~v~~~~~~-~~~~l~~---~~~d~~i~iwd~~~~ 264 (366)
.....++..++|+ ++..|+. ......|++|-+.+.
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3344559999999 8888877 555556999988765
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.2e-05 Score=71.18 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=100.5
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK 178 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~ 178 (366)
.|.--++... +++++.|+.-|.+.+|+-..++....-.......+..+..+++.. ++|.|+..|.|.++-+.. ...
T Consensus 35 ~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~-~~p 110 (726)
T KOG3621|consen 35 RVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNK-ELP 110 (726)
T ss_pred eEEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhc-cCC
Confidence 3444555555 889999999999999998777544332222222555566666555 449999999999999873 222
Q ss_pred eeEe-ecC--CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC---CCCeeEeecccCcEEEEEEcCCCEEEEEeC
Q 017773 179 CVST-VQP--SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM---VDPVLVFDGHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 179 ~~~~-~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
.... +.. ..|...|++++|++++ ..+++|...|+|.+-.+... ....+.+..-.+.|..+...++.+|++...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred CcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhh
Confidence 1111 111 1367899999999998 89999999999998887761 112333444567788887766555555544
Q ss_pred C
Q 017773 253 D 253 (366)
Q Consensus 253 d 253 (366)
.
T Consensus 190 r 190 (726)
T KOG3621|consen 190 R 190 (726)
T ss_pred h
Confidence 3
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=0.00013 Score=57.07 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=90.8
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
..+++.|+..+.+.--|..++....+.. .+ ..|.+-+.-- |++++.|...|.+++.+.++|..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg------------~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LG------------VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hC------------ceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh
Confidence 3577888888888888877766543111 11 1233333222 78899999999999999999987
Q ss_pred eEeeecCCCCceee-EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 134 IFERDEHGGRRVWS-VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 134 ~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
...+.... .|.+ ....+++..+ ..|+.|++.+..|.+ +..++...+..+. ...+-+..|-. ..|..+...|
T Consensus 86 ~w~f~~~~--~vk~~a~~d~~~glI-ycgshd~~~yalD~~--~~~cVykskcgG~--~f~sP~i~~g~-~sly~a~t~G 157 (354)
T KOG4649|consen 86 IWNFVILE--TVKVRAQCDFDGGLI-YCGSHDGNFYALDPK--TYGCVYKSKCGGG--TFVSPVIAPGD-GSLYAAITAG 157 (354)
T ss_pred eeeeeehh--hhccceEEcCCCceE-EEecCCCcEEEeccc--ccceEEecccCCc--eeccceecCCC-ceEEEEeccc
Confidence 77665544 2322 2334556655 999999999999999 7888888776553 22223344422 2344444556
Q ss_pred eEEEEecCC
Q 017773 213 KAYAYDVRK 221 (366)
Q Consensus 213 ~i~i~d~~~ 221 (366)
.+.--..+.
T Consensus 158 ~vlavt~~~ 166 (354)
T KOG4649|consen 158 AVLAVTKNP 166 (354)
T ss_pred eEEEEccCC
Confidence 655554443
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.58 E-value=0.00024 Score=58.75 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=155.6
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecCc
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
..++..|.+.++++-... .+-.-.+..+|+++.++++. +.-.|.+||..+......+.....+.
T Consensus 17 ~rv~viD~d~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 467888888888765443 22344567899999888753 33469999998754433221111111
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEE--cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSG--DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
... ......++++.+ +++++.. +--..|.|.|++.++.+.++.... |...-|.++.-|.+-+.||
T Consensus 91 ~~~------~~~~~~~~ls~d--gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-----C~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 91 AQV------VPYKNMFALSAD--GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-----CWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp --B------S--GGGEEE-TT--SSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-----EEEEEEEETTEEEEEETTS
T ss_pred hee------cccccceEEccC--CcEEEEEccCCCCeEEEEECCCCceeeeecCCC-----EEEEEecCCCceEEEecCC
Confidence 100 012344678888 8877765 344679999999999888876653 2222233333347888899
Q ss_pred cEEEeeCCCCCCceeEeec--CCCCCCCe-EEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-CeeEeec----------
Q 017773 166 TMQMWDPRCDGGKCVSTVQ--PSASRSAV-CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDG---------- 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~--~~~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~---------- 231 (366)
.+.-..+.. .++...... ......++ ..-++...+ ..++--+.+|.|+-.|+..... ....+..
T Consensus 158 sl~~v~Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 158 SLLTVTLDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp CEEEEEETS-TSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred ceEEEEECC-CCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 999888873 233332221 11111222 233444444 3444456899999998876521 1111110
Q ss_pred ccCcEEEEEEc-CCCEEEEEe---CCC-------cEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEE-ecCCC
Q 017773 232 HRKTVTYIRFL-DVDTLVTAG---TDG-------CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGC-GSETN 298 (366)
Q Consensus 232 ~~~~v~~~~~~-~~~~l~~~~---~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~dg 298 (366)
-.+.-.-++++ ..+.|+.-- .++ .|-++|+.+++.+.++... .++..++++ .+.+ +|++ ...++
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vs--qd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVS--QDDKPLLYALSAGDG 312 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEE--SSSS-EEEEEETTTT
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEc--cCCCcEEEEEcCCCC
Confidence 01223346666 444444322 111 4888899999999998753 355566766 6554 5544 45689
Q ss_pred eEEEEEeecCceEEEEe
Q 017773 299 QVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 299 ~i~iwd~~~~~~~~~~~ 315 (366)
.|.+||..+|+.+..++
T Consensus 313 ~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTT--EEEEE-
T ss_pred eEEEEeCcCCcEEeehh
Confidence 99999999999887764
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=2.7e-08 Score=86.18 Aligned_cols=203 Identities=14% Similarity=0.200 Sum_probs=133.5
Q ss_pred CCceEEEEECCCC--CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-
Q 017773 42 SDSIGVIEFDPSD--SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD- 118 (366)
Q Consensus 42 ~~~i~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~- 118 (366)
...+.|++++-+. .+++.|..+|.|-+-.+...... ...+..++..++++++|++- +...||+|-
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------s~E~tp~~ar~Ct~lAwneL-Dtn~LAagld 123 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------SAEVTPGYARPCTSLAWNEL-DTNHLAAGLD 123 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------cceecccccccccccccccc-cHHHHHhhhh
Confidence 4557777776543 58899999999999877653221 12234556678999999986 356777763
Q ss_pred ---CCCcEEEEeCCCC--cee--EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC
Q 017773 119 ---YDGVVMEYDLEKK--VPI--FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA 191 (366)
Q Consensus 119 ---~dg~i~iw~~~~~--~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~ 191 (366)
.|..+.|||+.++ .+. ..+.........+++|..+.+.+ .+|.....+.++|++ ..+...... ....
T Consensus 124 khrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klv-laGm~sr~~~ifdlR---qs~~~~~sv--nTk~ 197 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLV-LAGMTSRSVHIFDLR---QSLDSVSSV--NTKY 197 (783)
T ss_pred hhcccCCccceecccccCCCccccccccccccCccccccccCcchh-hcccccchhhhhhhh---hhhhhhhhh--hhhh
Confidence 4678999999876 222 22222222356689999666655 899989999999998 222222221 2226
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEe-cCCCCCCeeEeeccc----CcEEEEEEc--CCCEEEEEeC-CCcEEEEecCC
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYD-VRKMVDPVLVFDGHR----KTVTYIRFL--DVDTLVTAGT-DGCLKLWNVND 263 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~----~~v~~~~~~--~~~~l~~~~~-d~~i~iwd~~~ 263 (366)
+..+...|-...++++- .||.|.+|| .++..+++..+...+ ..+..++|. ....+++... .++|+++|+..
T Consensus 198 vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 67778888444676665 599999999 555544544443222 248899997 4445555554 56899999863
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.56 E-value=0.00037 Score=62.84 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=137.1
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc---------CCCcEEE
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD---------YDGVVME 125 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~dg~i~i 125 (366)
..++.++.+|.|.-+|.++++......... ... ..+.. ..+..+. +..++.++ .++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~-~~~--~~~~i----~ssP~v~----~~~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNND-QVP--PGYTM----TGAPTIV----KKLVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCC-CcC--cceEe----cCCCEEE----CCEEEEeccccccccCCCCcEEEE
Confidence 567777889999999998887654211100 000 00000 0011111 23444443 3678899
Q ss_pred EeCCCCceeEeeecCCC-------------------Ccee-eEEeccCCCceEEEecCCC------------------cE
Q 017773 126 YDLEKKVPIFERDEHGG-------------------RRVW-SVDYSKGDPVLGASGSDDG------------------TM 167 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~~-------------------~~v~-~i~~~~~~~~l~~~~~~dg------------------~v 167 (366)
+|.++++.+..+..... ..+. ..++.+.+..+ +.++.++ .|
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V-~vg~~~g~~~~~~~~~~~~~~~~~~~l 258 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLV-YVGTGNGSPWNWGGRRTPGDNLYTDSI 258 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEE-EEECCCCCCCccCCccCCCCCCceeeE
Confidence 99999987776654211 0111 23334444555 6665554 68
Q ss_pred EEeeCCCCCCceeEeecCCCCCC----CeEEEEEc----CCC--CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEE
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRS----AVCCVEFH----PFG--SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVT 237 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~----~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 237 (366)
.-+|.. +++.....+...+.. ......+. -++ ...+++++.+|.++.+|.+++ +.+-...... .
T Consensus 259 ~Ald~~--tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~---~ 332 (488)
T cd00216 259 VALDAD--TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVE---Q 332 (488)
T ss_pred EEEcCC--CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeec---c
Confidence 888888 888888776432211 00000111 122 136788889999999999998 4443332110 1
Q ss_pred EEEEcCCCEEEEE------------------eCCCcEEEEecCCCceeeeeeccc--------ceeeeEEEEEecCCCeE
Q 017773 238 YIRFLDVDTLVTA------------------GTDGCLKLWNVNDSRVIRTYKGHV--------NNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 238 ~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l 291 (366)
.++..+ ..++.+ ..+|.+.-.|+.+++.+-+..... .+...-... ..+..|
T Consensus 333 ~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v 409 (488)
T cd00216 333 PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLV 409 (488)
T ss_pred ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeE
Confidence 111112 222222 246788899999998777665431 111111111 356788
Q ss_pred EEecCCCeEEEEEeecCceEEEEecc
Q 017773 292 GCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 292 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+.++.||.|+.+|.++|+.++..+++
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEECC
Confidence 99999999999999999999988653
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=0.00018 Score=56.25 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=135.4
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
|++++.|...|.+++.+.+++...........-. + .....++ +.++..|+.|++.+..|..+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk------------~-~a~~d~~--~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK------------V-RAQCDFD--GGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhc------------c-ceEEcCC--CceEEEecCCCcEEEecccccce
Confidence 6789999999999999999886554222221111 1 1234555 88999999999999999999888
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE--EEEcCCCCcEEEEEecC
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC--VEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~l~~~~~d 211 (366)
+...+.... .-.+-+..|....| +.+...|.+.--.........+..... .+++.+ +... ..+..++.|
T Consensus 128 VykskcgG~-~f~sP~i~~g~~sl-y~a~t~G~vlavt~~~~~~~~~w~~~~---~~PiF~splcv~----~sv~i~~Vd 198 (354)
T KOG4649|consen 128 VYKSKCGGG-TFVSPVIAPGDGSL-YAAITAGAVLAVTKNPYSSTEFWAATR---FGPIFASPLCVG----SSVIITTVD 198 (354)
T ss_pred EEecccCCc-eeccceecCCCceE-EEEeccceEEEEccCCCCcceehhhhc---CCccccCceecc----ceEEEEEec
Confidence 887665543 33344455534444 444455655554444111122222211 112221 1111 223334455
Q ss_pred CeEEEEe--------cCCCCCCeeEeecccCcE-EEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE
Q 017773 212 KKAYAYD--------VRKMVDPVLVFDGHRKTV-TYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 212 ~~i~i~d--------~~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
|.+.-+| .++.. ++..-.....+. ..+.+-+.+.+.+...-..-.+|..+++...+.+-.. -+.|
T Consensus 199 G~l~~f~~sG~qvwr~~t~G-pIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p-----~l~F 272 (354)
T KOG4649|consen 199 GVLTSFDESGRQVWRPATKG-PIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP-----KLRF 272 (354)
T ss_pred cEEEEEcCCCcEEEeecCCC-ceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc-----ccce
Confidence 5554444 44432 221111111121 2233323333433333333446766666433333211 1223
Q ss_pred EEe-c---CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEE---e------eccCCCceEEEEeCC
Q 017773 283 SVW-R---HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVC---W------RRVGEDECTLVAGGS 349 (366)
Q Consensus 283 ~~~-~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~------~~~~~~~~~l~s~~~ 349 (366)
.++ | ..++|..++.||++.|.-.+. .+... ..|.+.+..+. . +|.--+| +|+.|+.
T Consensus 273 ~~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~--------~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcR 341 (354)
T KOG4649|consen 273 DLHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEI--------SSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCR 341 (354)
T ss_pred eccCCCCcchhhhhhhcCCCcEEEEEecc--ccccc--------ccCCCccceEEEeecCcccccCCeEEcc-EEEEEEc
Confidence 221 1 246778888899888874432 12211 11222222222 1 1211144 5677889
Q ss_pred CCcEEEEEeccc
Q 017773 350 DGLLHVFVGKKK 361 (366)
Q Consensus 350 dg~i~iw~~~~~ 361 (366)
|..++-||+++.
T Consensus 342 DdYv~cldl~~~ 353 (354)
T KOG4649|consen 342 DDYVRCLDLDTW 353 (354)
T ss_pred cCeEEEEecccc
Confidence 999999999874
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=3.5e-05 Score=68.80 Aligned_cols=277 Identities=13% Similarity=0.005 Sum_probs=153.2
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCcee-------ce-eee-ecC------Ccee--EEEEec-CCCCcEEEEE
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV-------CD-YYI-CTP------AKLS--SLKWKP-GTSGRVLGSG 117 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~-~~~-~~~------~~v~--~~~~~~-~~~~~~l~~~ 117 (366)
.|.+|+..|.++|+-+.+.++...+..+...... .. .+. ++. +... .+++.. .-+|++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 4788999999999999988776644433221110 00 010 000 0000 111111 0137788776
Q ss_pred cC-CCcEEEEeCCCCceeEeeecCCCCceeeEEec--c-----------------CCCceEEEecCCCcEEEeeCCCCCC
Q 017773 118 DY-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYS--K-----------------GDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 118 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~--~-----------------~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
.. +..|-..+++..+....+.......+..+.+. | +|+.+..+.-..+.+.+.|.. +.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~e--tm 225 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAE--TM 225 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECc--cc
Confidence 53 55666666665544333333222234444443 3 343332222234456667766 55
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec----CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA----DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 252 (366)
+...++...+ ...-++++|+| .++++.+. ..++...+.... .....+... .+. ++. +|++... .
T Consensus 226 eV~~qV~Vdg---npd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~-d~~vvfni~--~ie--a~vkdGK~~~V--~ 294 (635)
T PRK02888 226 EVAWQVMVDG---NLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAER-DWVVVFNIA--RIE--EAVKAGKFKTI--G 294 (635)
T ss_pred eEEEEEEeCC---CcccceECCCC-CEEEEeccCcccCcceeeeccccC-ceEEEEchH--HHH--HhhhCCCEEEE--C
Confidence 6666665444 45677899998 55555542 122333333221 111111100 000 122 5666555 3
Q ss_pred CCcEEEEecCC-----CceeeeeecccceeeeEEEEEecCCCeEEEec-CCCeEEEEEeecCce------------EEEE
Q 017773 253 DGCLKLWNVND-----SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVRWGEP------------VWVH 314 (366)
Q Consensus 253 d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~~~ 314 (366)
++.|.+.|.++ .+.+..+.... ....+.++ |||+++++++ .++++.|+|+.+.+. ....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vS--PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTS--PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEEC--CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 67899999998 45566665433 33566666 9999887665 489999999987653 2222
Q ss_pred ecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 315 DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
++ .......+|.+ +|....|---|..|-.|+++.
T Consensus 372 ev---------GlGPLHTaFDg---~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 EL---------GLGPLHTAFDG---RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cc---------CCCcceEEECC---CCCEEEeEeecceeEEEehHH
Confidence 11 22345678887 788888888999999999876
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=0.00028 Score=56.64 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=118.2
Q ss_pred eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE
Q 017773 137 RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216 (366)
Q Consensus 137 ~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 216 (366)
+.+-.. .+..++|+|+.+.|+++....+.|.-++.. ++.++.+...+ ....-.+++..++ .++++.-.++.+.+
T Consensus 17 l~g~~~-e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILD-ELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDG-FGDYEGITYLGNG-RYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred CCCccC-CccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCC-CCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence 344444 699999999989888888889988888865 78888887654 3578899998876 66666656899999
Q ss_pred EecCCCCCCe-----eEee-----cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC---Cceeeeee--------ccc
Q 017773 217 YDVRKMVDPV-----LVFD-----GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND---SRVIRTYK--------GHV 274 (366)
Q Consensus 217 ~d~~~~~~~~-----~~~~-----~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~--------~~~ 274 (366)
+++......+ ..+. .++..+-.++|. .++.|+.+-...-..+|.++. ...+.... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 9984432211 1111 245668999998 667777777666677777654 21111111 112
Q ss_pred ceeeeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEeccccc-ccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 275 NNRNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT-AAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 275 ~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
..+..+++. | .+.+++.+..+..|..+| .+|+++..+.+.... .+...-...-+|+|.+ +|++.++. +-+.
T Consensus 171 ~d~S~l~~~--p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~---~G~LYIvs-EpNl 243 (248)
T PF06977_consen 171 RDLSGLSYD--PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP---DGNLYIVS-EPNL 243 (248)
T ss_dssp S---EEEEE--TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T---T--EEEEE-TTTE
T ss_pred ccccceEEc--CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC---CCCEEEEc-CCce
Confidence 233445554 6 456777888889999999 678887776654310 0011123577999998 77555544 6665
Q ss_pred EEEE
Q 017773 353 LHVF 356 (366)
Q Consensus 353 i~iw 356 (366)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.51 E-value=0.00018 Score=62.05 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=133.7
Q ss_pred CCCCCEEEEee---------cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 51 DPSDSVFATGG---------IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 51 s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+ |+.++... ++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------------~~~~~~~~~sP~--g~~~~~v~-~~ 63 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------------PPKLQDAKWSPD--GKYIAFVR-DN 63 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------------ETTBSEEEE-SS--STEEEEEE-TT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------------ccccccceeecC--CCeeEEEe-cC
Confidence 67888777742 346788889887543221111 245888999999 99988876 67
Q ss_pred cEEEEeCCCCceeEeeecCCC----------------CceeeEEeccCCCceEEEecCCCcEEE----------------
Q 017773 122 VVMEYDLEKKVPIFERDEHGG----------------RRVWSVDYSKGDPVLGASGSDDGTMQM---------------- 169 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~----------------~~v~~i~~~~~~~~l~~~~~~dg~v~~---------------- 169 (366)
.|.+++..++...+....... ..-..+-|+|++++|++.--++..|..
T Consensus 64 nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~ 143 (353)
T PF00930_consen 64 NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEV 143 (353)
T ss_dssp EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EE
T ss_pred ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcc
Confidence 899999877754432221110 123568899999998554444444433
Q ss_pred -------------------eeCCCCCCceeEeecC----CCCCCCeEEEEEcCCCCcEEEEE-ecC---CeEEEEecCCC
Q 017773 170 -------------------WDPRCDGGKCVSTVQP----SASRSAVCCVEFHPFGSSLVAAG-CAD---KKAYAYDVRKM 222 (366)
Q Consensus 170 -------------------~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~-~~d---~~i~i~d~~~~ 222 (366)
+|+. +++.. .+.. ......+..+.|.+++..+++.- ..+ -.+.++|..++
T Consensus 144 ~~~~YPk~G~~np~v~l~v~~~~--~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 144 ESIRYPKAGDPNPRVSLFVVDLA--SGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp EEEE--BTTS---EEEEEEEESS--STCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred cccccCCCCCcCCceEEEEEECC--CCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence 3333 12111 1110 01233577888988873133332 222 24667777765
Q ss_pred CCCeeEeecccCcE---EEEEE--c-CCCEEEEEeCCCc--EEEEecCCCceeeeeecccceee-eEEEEEecCCCeEE-
Q 017773 223 VDPVLVFDGHRKTV---TYIRF--L-DVDTLVTAGTDGC--LKLWNVNDSRVIRTYKGHVNNRN-FVGLSVWRHGGLLG- 292 (366)
Q Consensus 223 ~~~~~~~~~~~~~v---~~~~~--~-~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~- 292 (366)
.............| ....+ . ++.++.....||. |.+++...+. ...+....-.|. .+.+. ++++.|+
T Consensus 221 ~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d--~~~~~iyf 297 (353)
T PF00930_consen 221 ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWD--EDNNRIYF 297 (353)
T ss_dssp TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEE--CTSSEEEE
T ss_pred ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEc--CCCCEEEE
Confidence 32222222222222 13333 2 4445555667775 5555555554 335554444453 34444 7766543
Q ss_pred EecCC--CeEEEE--EeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 293 CGSET--NQVFVY--DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 293 ~~~~d--g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
++..+ +.-.+| ++..+.....+.... ..| ..+.|+| ++++++-.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~----~~~----~~~~~Sp---dg~y~v~~ 345 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEPKCLTCED----GDH----YSASFSP---DGKYYVDT 345 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEEEESSTTS----STT----EEEEE-T---TSSEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCCeEeccCCC----CCc----eEEEECC---CCCEEEEE
Confidence 55442 234444 444123333332211 112 6899999 77777643
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=4.8e-05 Score=67.95 Aligned_cols=182 Identities=17% Similarity=0.116 Sum_probs=106.9
Q ss_pred eeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDG----VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
..-++++|+ |.++++.+.+. ++...+..+......+... .+ -++.++|++.++ .++.|.+.|.++.
T Consensus 237 pd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~---~i--ea~vkdGK~~~V---~gn~V~VID~~t~ 306 (635)
T PRK02888 237 LDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA---RI--EEAVKAGKFKTI---GGSKVPVVDGRKA 306 (635)
T ss_pred cccceECCC--CCEEEEeccCcccCcceeeeccccCceEEEEchH---HH--HHhhhCCCEEEE---CCCEEEEEECCcc
Confidence 356788888 88888776322 2222222221111111111 00 133456776633 3578999998820
Q ss_pred ---CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-----------CeeEeecccCcEEEEEE
Q 017773 176 ---GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-----------PVLVFDGHRKTVTYIRF 241 (366)
Q Consensus 176 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~v~~~~~ 241 (366)
..+.+..+... .....+.++|+|..+++++..+.+|.++|+.+... .......-.++ ...+|
T Consensus 307 ~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaF 382 (635)
T PRK02888 307 ANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAF 382 (635)
T ss_pred ccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEE
Confidence 13455555433 27889999999976777777899999999987532 12222222233 35677
Q ss_pred c-CCCEEEEEeCCCcEEEEecCC----------CceeeeeecccceeeeE---EEEEecCCCeEEEec
Q 017773 242 L-DVDTLVTAGTDGCLKLWNVND----------SRVIRTYKGHVNNRNFV---GLSVWRHGGLLGCGS 295 (366)
Q Consensus 242 ~-~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 295 (366)
. +|..+.+-..|..|..|++.+ ...+..+.-|..+-... .=+..|+|++|++..
T Consensus 383 Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 383 DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 7 778888888999999999876 23444444443322111 112237888887764
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=7.3e-05 Score=66.37 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...|.--+++..+++++.|+.-|.+.+|+-..++..... ..+ ..+.+..+..+++ ..++|.|+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~----------~~~~~~~~~vs~~--e~lvAagt~~ 97 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEG----------ATGITCVRSVSSV--EYLVAAGTAS 97 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc--ccC----------ccceEEEEEecch--hHhhhhhcCC
Confidence 5666776777788999999999999999998776553311 111 1234666777887 8888999999
Q ss_pred CcEEEEeCCCCce---eEeeecC--CCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 121 GVVMEYDLEKKVP---IFERDEH--GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 121 g~i~iw~~~~~~~---~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
|.|.++.++...+ +..-..+ ++..|++++|++++..+ ++|...|+|.+-.+.
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~-ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKL-YSGDSQGKVVLTELD 154 (726)
T ss_pred ceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEE-eecCCCceEEEEEec
Confidence 9999998876432 2222222 24589999999999998 999999999998887
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=0.00036 Score=56.05 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=111.6
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..+..++|.|+ .+.++++....+.|..++. +|+.+..+..........|++..++.++ ++.-.++.+.++++...+.
T Consensus 22 ~e~SGLTy~pd-~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~v-l~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 22 DELSGLTYNPD-TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYV-LSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp S-EEEEEEETT-TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEE-EEETTTTEEEEEEE----T
T ss_pred CCccccEEcCC-CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEE-EEEcCCCcEEEEEEecccc
Confidence 45999999997 3567777788888988887 4777777765544478899998766554 6666689999999852221
Q ss_pred c----eeEeecC--C-CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC--CCCCeeEe--------ecccCcEEEEE
Q 017773 178 K----CVSTVQP--S-ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK--MVDPVLVF--------DGHRKTVTYIR 240 (366)
Q Consensus 178 ~----~~~~~~~--~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~--------~~~~~~v~~~~ 240 (366)
. ....+.. . .+...+-.++|+|.+ +.++++-...-..+|.++. ........ ......+.++.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1 1122221 1 344578999999987 4555555666666776654 11111111 11234577888
Q ss_pred Ec--CCCEEEEEeCCCcEEEEecCCCceeeeeeccc---------ceeeeEEEEEecCCCeEEEecCCCeEEEE
Q 017773 241 FL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV---------NNRNFVGLSVWRHGGLLGCGSETNQVFVY 303 (366)
Q Consensus 241 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 303 (366)
++ .+.+++.+.....|..+| .+|+++..+.-.. .....+++. ++|++.+++ +-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d--~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD--PDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE---TT--EEEEE-TTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC--CCCCEEEEc-CCceEEEe
Confidence 87 667888888888999999 6777766554322 123456665 888665555 55554443
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=5.8e-05 Score=65.80 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=79.8
Q ss_pred ceeeEEeccCCCceEEEe----cCCCc----EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEE
Q 017773 144 RVWSVDYSKGDPVLGASG----SDDGT----MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~----~~dg~----v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 215 (366)
...++.|+...++.+.+. +.+|. -.+|++..+.-+.+..... ..+..+.+++++|+. ..++.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence 346777776555544443 23443 3466666222222222222 345589999999997 8999999999999
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
+||.... +.......-..+.++|+ +|.++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9998765 22222344567889999 9999999999999999998643
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.42 E-value=0.00035 Score=59.52 Aligned_cols=223 Identities=12% Similarity=0.120 Sum_probs=123.2
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEecc---C---CCceEEEecC----------CCcEEEeeCCCCC--CceeEe
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK---G---DPVLGASGSD----------DGTMQMWDPRCDG--GKCVST 182 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~---~---~~~l~~~~~~----------dg~v~~~d~~~~~--~~~~~~ 182 (366)
+.|++.|..+.+.+..+.-.....+.+++... + ...+++.|+. .|.|.++++.... ...+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777666555554666655432 2 1344465543 2889999998310 122332
Q ss_pred ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc--cCcEEEEEEcCCCEEEEEeCCCcEEEEe
Q 017773 183 VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH--RKTVTYIRFLDVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d~~i~iwd 260 (366)
+......++|++++-- .+ . ++++ ..+.|++|++.... .+.....+ ...+.++... +++++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcc-cchhhheecceEEEEEEecc-ccEEEEEEcccCEEEEE
Confidence 2222335589998877 33 4 4444 45899999998873 22222222 2355555554 55888998888888875
Q ss_pred cCC-CceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec-------Cc-eEE-EEecccccccCCCCceee
Q 017773 261 VND-SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-------GE-PVW-VHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~-~~~-~~~~~~~~~~~~~~~~v~ 330 (366)
.+. ...+..+.....+....+..+-++++.++.+..+|.+.++.... +. .+. ...+ .....|+
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-------~lg~~v~ 228 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-------HLGDIVN 228 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-------E-SS-EE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-------ECCCccc
Confidence 543 33233443333344444444435667999999999999999863 12 111 1111 1235577
Q ss_pred EE---Eeecc--CCC---ceEEEEeCCCCcEEEE
Q 017773 331 SV---CWRRV--GED---ECTLVAGGSDGLLHVF 356 (366)
Q Consensus 331 ~~---~~~~~--~~~---~~~l~s~~~dg~i~iw 356 (366)
++ .+.|. ..+ ...++.++.+|.|.+.
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 77 54442 111 1257778889988743
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.42 E-value=0.0011 Score=58.66 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=132.4
Q ss_pred eeEEEEecCCCCcEEEEE-cCC----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC----------
Q 017773 100 LSSLKWKPGTSGRVLGSG-DYD----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD---------- 164 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---------- 164 (366)
+....++|+ +++++.+ +.. ..++++|+++++.+....... .-..+.|.++++.++++...+
T Consensus 126 ~~~~~~Spd--g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPD--GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTT--SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCC--CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 446788898 8888755 333 459999999997665332221 223499999999886665433
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC---CeEEEEecCCC---CCCeeEeecccCcEE-
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD---KKAYAYDVRKM---VDPVLVFDGHRKTVT- 237 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~---~~~~~~~~~~~~~v~- 237 (366)
..|+.|.+.++..+....+...........+..++++..+++..... ..+++.|+... ......+......+.
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 23788888743333234444333322367888999985444444333 35888888763 233444444444443
Q ss_pred EEEEcCCCEEEEEe---CCCcEEEEecCCCce---eeeeecccceeeeEEEEEecCCCeE-EEecCCC--eEEEEEeecC
Q 017773 238 YIRFLDVDTLVTAG---TDGCLKLWNVNDSRV---IRTYKGHVNNRNFVGLSVWRHGGLL-GCGSETN--QVFVYDVRWG 308 (366)
Q Consensus 238 ~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg--~i~iwd~~~~ 308 (366)
.+....+.+++... ..+.|...++.+... ...+..+...+....+. ..+.+| +..-.++ .|+++++..+
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECCCC
Confidence 34333444444432 235677777776652 22455555544444444 334444 4444444 5788888744
Q ss_pred ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe-CC--CCcEEEEEecccC
Q 017773 309 EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG-GS--DGLLHVFVGKKKP 362 (366)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-~~--dg~i~iw~~~~~~ 362 (366)
.....+..+. .+.|..+...+.++ .+.++. |. -+++.-||+.++.
T Consensus 360 ~~~~~~~~p~-------~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 360 KESREIPLPE-------AGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEESSS-------SSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEeeecCCc-------ceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCC
Confidence 5555544332 35566666555332 233322 22 3567777777654
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=0.00016 Score=63.11 Aligned_cols=177 Identities=16% Similarity=0.098 Sum_probs=103.6
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC---CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD---GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.+.+-|.+ +.....+..... .+..-+|+|++..+.+..-.. ..+.++|+. .++........+ .-..-+|+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~-~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~--~g~~~~i~~~~g---~~~~P~fs 246 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGS-LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN--TGKRPVILNFNG---NNGAPAFS 246 (425)
T ss_pred eEEEEccC-CcceeEecccCc-ceeccccCcCCCceEEEEEecCCCceEEEEecc--CCccceeeccCC---ccCCccCC
Confidence 34444444 433444433333 777888999998875443332 358999998 555555554334 33445899
Q ss_pred CCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCc--EEEEecCCCceeeeeec
Q 017773 199 PFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGC--LKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~ 272 (366)
|+|++++++...||. |+++|+.... ...+....+.-..=.|+ +|+.++..+ ..|. |.+++...... ..+..
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~ 323 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF 323 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence 999888888888876 6666776652 33344333333355677 888776554 4554 55556555443 34433
Q ss_pred ccceeeeEEEEEecCCCeEEEecC-CCe--EEEEEeecCce
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSE-TNQ--VFVYDVRWGEP 310 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~ 310 (366)
....-..-.++ |||++++..+. +|. |.+.|+.++..
T Consensus 324 ~~~~~~~p~~S--pdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 324 SGGGNSNPVWS--PDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred cCCCCcCccCC--CCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 32222233444 99999886664 344 66666665553
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=0.00085 Score=58.97 Aligned_cols=218 Identities=14% Similarity=0.067 Sum_probs=112.3
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe-eCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW-DPRCDG 176 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~-d~~~~~ 176 (366)
-....+.++|+ |+.++.++ ||...++.....+... .+ .-....|.+.++ + |+-..++.|.++ ++.
T Consensus 33 ~~p~~ls~npn--gr~v~V~g-~geY~iyt~~~~r~k~--~G----~g~~~vw~~~n~-y-Av~~~~~~I~I~kn~~--- 98 (443)
T PF04053_consen 33 IYPQSLSHNPN--GRFVLVCG-DGEYEIYTALAWRNKA--FG----SGLSFVWSSRNR-Y-AVLESSSTIKIYKNFK--- 98 (443)
T ss_dssp S--SEEEE-TT--SSEEEEEE-TTEEEEEETTTTEEEE--EE----E-SEEEE-TSSE-E-EEE-TTS-EEEEETTE---
T ss_pred cCCeeEEECCC--CCEEEEEc-CCEEEEEEccCCcccc--cC----ceeEEEEecCcc-E-EEEECCCeEEEEEcCc---
Confidence 35788999998 99888855 7888888743333222 11 445688888544 4 666668889996 443
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
.+....++.+. .+..+-. | .+|+..+ ++.|.+||..+. +.+..+... +|..+.|+ ++++++..+.+ .
T Consensus 99 ~~~~k~i~~~~---~~~~If~---G-~LL~~~~-~~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 99 NEVVKSIKLPF---SVEKIFG---G-NLLGVKS-SDFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp E-TT-----SS----EEEEE----S-SSEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred cccceEEcCCc---ccceEEc---C-cEEEEEC-CCCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEEEeCC-e
Confidence 33333444322 3444333 5 5666654 448999999987 677777643 48999999 78888887755 5
Q ss_pred EEEEecCCC-----------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCC
Q 017773 256 LKLWNVNDS-----------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 256 i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
+.+++.... ..+..+..-...|....|. .+ .++-.+.. .|+. +.+|+......+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~--~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l-------- 231 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV--ED--CFIYTTSN-HLKY--LVNGETGIIAHL-------- 231 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE--TT--EEEEE-TT-EEEE--EETTEEEEEEE---------
T ss_pred EEEEEecchhcccccccCchhceEEEEEecceeEEEEEE--cC--EEEEEcCC-eEEE--EEcCCcceEEEc--------
Confidence 777664432 0222332213355566665 33 33333333 6666 555554332221
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..++.=+.+.| ..+.+.....|+.|..+.++.
T Consensus 232 -d~~~yllgy~~---~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 232 -DKPLYLLGYLP---KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -SS--EEEEEET---TTTEEEEE-TT--EEEEE--H
T ss_pred -CCceEEEEEEc---cCCEEEEEECCCCEEEEEECH
Confidence 34566667776 556888888898888887653
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.35 E-value=0.00058 Score=58.96 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=136.4
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
........++.+++.+..-.. ....+....|||+|+.+|... ++.|.+++..++...+ .+..+.. ..+.
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~-----~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~--lT~dg~~---~i~n 88 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTP-----PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ--LTTDGEP---GIYN 88 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS------EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE--SES--TT---TEEE
T ss_pred ccceeEEEEecCCCceEECcC-----CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE--eccccce---eEEc
Confidence 344556677777765533221 156789999999999999875 7899999876653221 1111100 0000
Q ss_pred ec---------CCceeEEEEecCCCCcEEEEEcCC-Cc-----------------------------------EEEEeCC
Q 017773 95 CT---------PAKLSSLKWKPGTSGRVLGSGDYD-GV-----------------------------------VMEYDLE 129 (366)
Q Consensus 95 ~~---------~~~v~~~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~iw~~~ 129 (366)
|- -+.-..+.|+|+ +++|+....| .. +.++|+.
T Consensus 89 G~~dwvyeEEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 89 GVPDWVYEEEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp SB--HHHHHHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred CccceeccccccccccceEECCC--CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 00 112356889999 8887765322 11 3344554
Q ss_pred CCceeE-eee---cCCCCceeeEEeccCCCce-EEEecCCC---cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc-CC
Q 017773 130 KKVPIF-ERD---EHGGRRVWSVDYSKGDPVL-GASGSDDG---TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH-PF 200 (366)
Q Consensus 130 ~~~~~~-~~~---~~~~~~v~~i~~~~~~~~l-~~~~~~dg---~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 200 (366)
+++... ... .....-+..+.|.+++..+ +.....+. .+.++|..+...+.+..-...+--..-....+. ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 444321 111 1122367788999888844 23333332 356677762222222222222222223355554 77
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE-EEEc-CCC-EEEEEeCCC----cEEEEecCCCceeeeeecc
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY-IRFL-DVD-TLVTAGTDG----CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~-~~~-~l~~~~~d~----~i~iwd~~~~~~~~~~~~~ 273 (366)
+..++.....+|.-+||-++........+....-.|.. +.+. +++ +++++..++ .|..-++..+..+..+...
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~ 326 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE 326 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT
T ss_pred CCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC
Confidence 76777777788865555444433345566656666755 4455 444 445555433 4555566523444555543
Q ss_pred cceeeeEEEEEecCCCeEEEe
Q 017773 274 VNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~ 294 (366)
........ ++|++++++-.
T Consensus 327 ~~~~~~~~--~Spdg~y~v~~ 345 (353)
T PF00930_consen 327 DGDHYSAS--FSPDGKYYVDT 345 (353)
T ss_dssp SSTTEEEE--E-TTSSEEEEE
T ss_pred CCCceEEE--ECCCCCEEEEE
Confidence 33222344 44999988744
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=9.7e-05 Score=64.46 Aligned_cols=116 Identities=13% Similarity=0.212 Sum_probs=77.3
Q ss_pred CceeEEEEecCCCCcEEEEE----cCCCc----EEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 98 AKLSSLKWKPGTSGRVLGSG----DYDGV----VMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~----~~dg~----i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
....++.|+-.. ...+.+. +.+|. -.+|+...++ .+......-...|.+.+++|+...+ +.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~-~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kL-vlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQ-PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKL-VLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCC-CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceE-EEEecCCeE
Confidence 344667777542 3344332 23343 2456665443 2222222223389999999999988 899999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM 222 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 222 (366)
.+||.. .+... ..+ ..-.++.++|+|+| .++++|+..|.+.+||+.-.
T Consensus 284 iLyD~~--~~~t~-~~k---a~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTT--RGVTL-LAK---AEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcC--CCeee-eee---ecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 999987 33222 222 22378899999998 89999999999999998754
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=4.3e-05 Score=70.73 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=102.8
Q ss_pred CcEEEEE-cCCCcEEEEeCCCCceeEeeecCCCCceeeEEecc-----CCCceEEEecCCCcEEEeeCCCCCCceeEe-e
Q 017773 111 GRVLGSG-DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK-----GDPVLGASGSDDGTMQMWDPRCDGGKCVST-V 183 (366)
Q Consensus 111 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~-~ 183 (366)
..+|+.- .....|+-.|++.|+.+.+...+...+|..++-.. ..... +.|-.+..+..||.+....+.+.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccCCCCCceeeccc
Confidence 4444443 34578999999999999999998865566654321 12333 667778899999999543333321 1
Q ss_pred cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 184 QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
..........|++-..+| .||+|+.+|.|++||-- +.+....+.+-..+|..|..+ +|+++++.+ +..+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 112344578888888887 89999999999999943 334455566778999999999 999887776 455666664
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.00026 Score=60.28 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=110.2
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEE---EEcCC---CCcEEEEEec---------C-CeEEEEecCCCC---CCe
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCV---EFHPF---GSSLVAAGCA---------D-KKAYAYDVRKMV---DPV 226 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~---~~~~l~~~~~---------d-~~i~i~d~~~~~---~~~ 226 (366)
.|++.|.. +.+.+..+..... ..+.++ .+..+ ...++++|+. . |.|.++++.... ..+
T Consensus 3 ~i~l~d~~--~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPT--TFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp EEEEEETT--TSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred EEEEEeCC--CCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 57788877 5666666555432 234433 33332 1367887763 2 899999998831 122
Q ss_pred eEe--ecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 227 LVF--DGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 227 ~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
..+ ...+++|++++--++. |+.+. ++.|.+|++...+.+.....+..+...+++. ..+++++.|..-..+.++.
T Consensus 80 ~~i~~~~~~g~V~ai~~~~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFNGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--VFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEEESS-EEEEEEETTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE--EETTEEEEEESSSSEEEEE
T ss_pred EEEEEEeecCcceEhhhhCCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEe--ccccEEEEEEcccCEEEEE
Confidence 221 3357889999877555 44333 5889999998887232332233344455555 4577999999888899887
Q ss_pred eecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 305 VRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 305 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.+.. ..+..+.. ......++++.|-+ +++.++.+..+|.|.++....
T Consensus 156 ~~~~~~~l~~va~------d~~~~~v~~~~~l~---d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVAR------DYQPRWVTAAEFLV---DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEE------ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEe------cCCCccEEEEEEec---CCcEEEEEcCCCeEEEEEECC
Confidence 7652 22333321 11346688999987 545899999999999998864
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.27 E-value=0.0032 Score=57.22 Aligned_cols=203 Identities=12% Similarity=0.125 Sum_probs=108.0
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+..|+.++.++.|.-.|..+++............. .........-..+++. +..++.++.|+.+.-.|..+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~--~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDV--IPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCccc--ccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCE
Confidence 34666667788888889888776552211100000 0000000000112232 34677788899999999999988
Q ss_pred eEeeecCCCCceeeEEecc--CCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCCC----------------
Q 017773 134 IFERDEHGGRRVWSVDYSK--GDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSASR---------------- 189 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~~---------------- 189 (366)
+-.........-..+.-.| .+..+ +.+. .+|.|.-+|.+ +++.+..+......
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~V-ivg~~~~~~~~~G~v~AlD~~--TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKV-ITGISGGEFGVRGYVTAYDAK--TGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred EeecccccccccccccCCcEEECCEE-EEeecccccCCCcEEEEEECC--CCceeEeccCcCCCcccccccccccccccc
Confidence 7665432110000111111 12334 3332 26889999988 77766655432110
Q ss_pred -------------CCe-EEEEEcCCCCcEEEEEecC-----C-----------eEEEEecCCCCCCeeEeec--cc----
Q 017773 190 -------------SAV-CCVEFHPFGSSLVAAGCAD-----K-----------KAYAYDVRKMVDPVLVFDG--HR---- 233 (366)
Q Consensus 190 -------------~~i-~~~~~~~~~~~~l~~~~~d-----~-----------~i~i~d~~~~~~~~~~~~~--~~---- 233 (366)
..+ ..+++.|.. .+++.+..+ + +|.-.|++++ +..-.++. |.
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDY 297 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccc
Confidence 001 134666654 455555422 2 5777788877 44433332 21
Q ss_pred ---CcEEEEEEc-CCC---EEEEEeCCCcEEEEecCCCcee
Q 017773 234 ---KTVTYIRFL-DVD---TLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 234 ---~~v~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
....-+... +++ .++.+..+|.+.+.|.++++++
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111222332 454 7889999999999999999876
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.21 E-value=0.0035 Score=55.56 Aligned_cols=247 Identities=16% Similarity=0.150 Sum_probs=128.6
Q ss_pred ceEEEEECCCCCEEEEe-ecCC----eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 44 SIGVIEFDPSDSVFATG-GIAR----KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+...++||+|+++|.+ +..| .++++|+.+++..... +.. .....+.|.++ ++.|+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~------------~~~~~~~W~~d--~~~~~y~~ 188 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IEN------------PKFSSVSWSDD--GKGFFYTR 188 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEE------------EESEEEEECTT--SSEEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccc------------cccceEEEeCC--CCEEEEEE
Confidence 34468899999988865 3333 5999999887443211 011 01234999998 76665543
Q ss_pred C-----------CCcEEEEeCCCCcee--EeeecCCCCc-eeeEEeccCCCceEEEecCCC---cEEEeeCCCC--CCce
Q 017773 119 Y-----------DGVVMEYDLEKKVPI--FERDEHGGRR-VWSVDYSKGDPVLGASGSDDG---TMQMWDPRCD--GGKC 179 (366)
Q Consensus 119 ~-----------dg~i~iw~~~~~~~~--~~~~~~~~~~-v~~i~~~~~~~~l~~~~~~dg---~v~~~d~~~~--~~~~ 179 (366)
. ...|+.|.+.+.... ..+....... ...+..+++++++++...... .+.+.|+... ....
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 2 234788888876432 3444444323 668889999999876655443 4778888721 0122
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEE---ecCCeEEEEecCCCCC--CeeEeecccC--cEEEEEEcCCCEEEEEeC
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAG---CADKKAYAYDVRKMVD--PVLVFDGHRK--TVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~l~~~~~ 252 (366)
...+.. ...+....+... .+ .+++.. ...+.|...++..... ....+..+.. .+..+....+.+++..-.
T Consensus 269 ~~~l~~-~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 269 PKLLSP-REDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp EEEEEE-SSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cEEEeC-CCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 333321 111233334333 33 444443 2346788888887632 1224555555 344554444455555555
Q ss_pred CC--cEEEEecCCCceeeeeecc-cceeeeEEEEEecCCCeEE--EecC--CCeEEEEEeecCceE
Q 017773 253 DG--CLKLWNVNDSRVIRTYKGH-VNNRNFVGLSVWRHGGLLG--CGSE--TNQVFVYDVRWGEPV 311 (366)
Q Consensus 253 d~--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~--~~~~--dg~i~iwd~~~~~~~ 311 (366)
++ .|+++++..+.....+... .+.+..+... +++..+. ..+. -+++..||+.+++..
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~--~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGD--FDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES---TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCC--CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 55 5888998834444444332 2223333222 4444332 2222 356777777776653
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.21 E-value=0.0023 Score=53.21 Aligned_cols=228 Identities=16% Similarity=0.130 Sum_probs=128.0
Q ss_pred CCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 52 PSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 52 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
..++.|+.|..+| +.+++........ .... ..+|..+...|+ -+.|++-+ |+.+.++++..-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~---~i~~-----------~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT---RILK-----------LSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce---eEee-----------cceEEEEEEecc--cCEEEEEc-CCccEEEEchhh
Confidence 3567899999888 8888883222111 1111 124899999987 56666555 699999998764
Q ss_pred ceeEee-------------ecCCCCceeeEE--eccCCCceEEEecCCCcEEEeeCCCC--CC-ceeEeecCCCCCCCeE
Q 017773 132 VPIFER-------------DEHGGRRVWSVD--YSKGDPVLGASGSDDGTMQMWDPRCD--GG-KCVSTVQPSASRSAVC 193 (366)
Q Consensus 132 ~~~~~~-------------~~~~~~~v~~i~--~~~~~~~l~~~~~~dg~v~~~d~~~~--~~-~~~~~~~~~~~~~~i~ 193 (366)
...... .......+...+ -...+...++.+ ....|.+|....+ .. +..+.+..+ ..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~ 142 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP---DPPS 142 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC---CCcE
Confidence 333311 111111444444 112333332433 4458998888732 22 455666554 4899
Q ss_pred EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec------------ccCcEEEEEEcCCCEEEEEeCCCcEEEEec
Q 017773 194 CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG------------HRKTVTYIRFLDVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~ 261 (366)
+++|.+ ..++.|.. ....+.|+.++ .....+.. ...++..+...++.+|++. |..-.+.|
T Consensus 143 ~i~~~~---~~i~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~- 214 (275)
T PF00780_consen 143 SIAFLG---NKICVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN- 214 (275)
T ss_pred EEEEeC---CEEEEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-
Confidence 999994 46666654 45788898865 33322211 1123444444445555543 33333334
Q ss_pred CCCceee--eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 262 NDSRVIR--TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 262 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
..|++.+ .++-.. ....+.+. ..+|++.+. +.|.||++.+++.+..+.
T Consensus 215 ~~G~~~r~~~i~W~~-~p~~~~~~----~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 215 KNGEPSRKSTIQWSS-APQSVAYS----SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred CCCCcCcccEEEcCC-chhEEEEE----CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3454333 333322 22333333 457777666 459999999999887775
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0027 Score=52.82 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec------
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ------ 184 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~------ 184 (366)
++.|+.|+.+| +.+++.............. +|..+...++-+.+++-+ |+.+.++++. .........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs--d~~l~~~~L~--~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS--DGQLYVYDLD--SLEPVSTSAPLAFPK 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc--CCccEEEEch--hhccccccccccccc
Confidence 78899999888 8999983332222222222 599999999877764443 5999999987 322222100
Q ss_pred ------CCCCCCCeEEEE--EcCCCCcEEEEEecCCeEEEEecCCCC----CCeeEeecccCcEEEEEEcCCCEEEEEeC
Q 017773 185 ------PSASRSAVCCVE--FHPFGSSLVAAGCADKKAYAYDVRKMV----DPVLVFDGHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 185 ------~~~~~~~i~~~~--~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
.......+...+ -.+.+...++++ ...+|.+|...... +..+.+. -...+..++|. ++.++.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~-~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL-GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe-CCEEEEEeC
Confidence 011222444444 223343444444 55689888887631 2334443 34678889987 556666664
Q ss_pred CCcEEEEecCCCceeeeeeccc------------ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE--EEeccc
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHV------------NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW--VHDFEP 318 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 318 (366)
+ ...+.|+.++.....+.... .++..+.+ +++.+|++- |..-.+.| ..|++.. .+.+
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W-- 227 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQW-- 227 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEEe--cceEEEEc-CCCCcCcccEEEc--
Confidence 4 47788998775543332111 12222222 456666654 22333334 3454443 2222
Q ss_pred ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 319 VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
...+.++++.. | +|+..+.++ |.||++.++.+
T Consensus 228 -------~~~p~~~~~~~--p---yli~~~~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 228 -------SSAPQSVAYSS--P---YLIAFSSNS-IEVRSLETGEL 259 (275)
T ss_pred -------CCchhEEEEEC--C---EEEEECCCE-EEEEECcCCcE
Confidence 23456666643 3 777776654 99999988754
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0031 Score=53.41 Aligned_cols=307 Identities=11% Similarity=0.047 Sum_probs=132.2
Q ss_pred ecCCCceeeecCCCCc-cCCCceEEEEECCCCCEEEE-eecCCe--EEEEEceecccccceeeeecCceeceeeeecCCc
Q 017773 24 DFNLRTTVSSSSSPNA-AVSDSIGVIEFDPSDSVFAT-GGIARK--IRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAK 99 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~~~~l~t-~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
|++++..+........ -|.-..+.=+|.+||+.|+. +..||. +.+-|+.+++..+ +..... ..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g---------~~ 82 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPG---------DN 82 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS----------B-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCC---------CC
Confidence 5667766666543321 13333344467888965554 444654 5555666654332 111110 11
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEec--cCCCceEEEec---C-----------
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYS--KGDPVLGASGS---D----------- 163 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~---~----------- 163 (366)
.....++|+ .+.++-......|+-.|+++.+....+..... -+-...|. .++..+ +-.- .
T Consensus 83 ~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~-~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f 158 (386)
T PF14583_consen 83 TFGGFLSPD--DRALYYVKNGRSLRRVDLDTLEERVVYEVPDD-WKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGF 158 (386)
T ss_dssp TTT-EE-TT--SSEEEEEETTTEEEEEETTT--EEEEEE--TT-EEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHH
T ss_pred ccceEEecC--CCeEEEEECCCeEEEEECCcCcEEEEEECCcc-cccccceeeCCCccEE-EEEEEeehhccCccccHHH
Confidence 234566777 66665554456888899999876555555544 44445553 333333 2111 0
Q ss_pred --------CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec---CC-eEEEEecCCCCCCeeEeec
Q 017773 164 --------DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA---DK-KAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 164 --------dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~-~i~i~d~~~~~~~~~~~~~ 231 (366)
...|.-.|+. +++....+.. ...+.-+.|+|..+.+|+-|.+ +. .-+||-+++.......+..
T Consensus 159 ~e~~~a~p~~~i~~idl~--tG~~~~v~~~---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 159 REFYEARPHCRIFTIDLK--TGERKVVFED---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp HHHHHC---EEEEEEETT--T--EEEEEEE---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred HHHHhhCCCceEEEEECC--CCceeEEEec---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 1234445555 5555444442 2377889999988666666542 22 1366766654334444333
Q ss_pred cc--CcEEEEEEc-CCCEEEEEe-----CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC-----
Q 017773 232 HR--KTVTYIRFL-DVDTLVTAG-----TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN----- 298 (366)
Q Consensus 232 ~~--~~v~~~~~~-~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----- 298 (366)
+. ..+..=-|. +|..+.--+ .+..|.-+|..+++........ .+.-+..++||++++-=+.|.
T Consensus 234 ~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~ 309 (386)
T PF14583_consen 234 RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVA 309 (386)
T ss_dssp --TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--------
T ss_pred CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCcccc
Confidence 32 223333455 666554322 2445777888877543322211 244555568998876443332
Q ss_pred -----------eEEEEEeecCceEEEEeccccc-ccCCCCc-eeeEEEeeccCCCceEE-EEeCCCCcEEEEEec
Q 017773 299 -----------QVFVYDVRWGEPVWVHDFEPVT-AAGSERG-FVSSVCWRRVGEDECTL-VAGGSDGLLHVFVGK 359 (366)
Q Consensus 299 -----------~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~ 359 (366)
-|+++++..++........... ...++.. .=....|+| ||+.+ +++...|...||-++
T Consensus 310 ~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP---Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 310 DAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP---DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-T---TSSEEEEEE-TTSS-EEEEEE
T ss_pred ccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC---CCCEEEEECCCCCCccEEEEe
Confidence 4556777665543222211000 1111111 114678999 77665 556668888887654
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.0036 Score=54.34 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=119.0
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC---C
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC---D 175 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~---~ 175 (366)
.|+.+.|.++ ..-|++|...|.|.+|.....+... .+...+-....+.+- . ..++.-.+-|+.. +
T Consensus 3 ~v~~vs~a~~--t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~------~-~~~~~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPE--TLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRF------S-LNNSPGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETT--TTEEEEEETTS-EEEEEEEE---------------------S---------GGGSS-SEEE-GGG--T
T ss_pred eEEEEEecCC--CceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccccc------c-ccCCCcceEEehhhCCc
Confidence 4899999998 8889999999999999886544322 011001112222110 0 0111222333321 0
Q ss_pred ----CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--c------ccCcEEEEEEc-
Q 017773 176 ----GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--G------HRKTVTYIRFL- 242 (366)
Q Consensus 176 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~------~~~~v~~~~~~- 242 (366)
...+...+. ...++|++++.+.-| ++|+|..+|.+.+.|+|.+ ..+..-. . ....++++.|.
T Consensus 71 ~~~~gf~P~~l~~--~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 71 SLKEGFLPLTLLD--AKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp T-SEEEEEEEEE-----S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred ccccccCchhhee--ccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEE
Confidence 112233333 336799999999776 9999999999999999876 3443311 1 23457788884
Q ss_pred -----CC---CEEEEEeCCCcEEEEecCC---Cc----eeeeeecccceeeeEEEEEecC--------------------
Q 017773 243 -----DV---DTLVTAGTDGCLKLWNVND---SR----VIRTYKGHVNNRNFVGLSVWRH-------------------- 287 (366)
Q Consensus 243 -----~~---~~l~~~~~d~~i~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~~-------------------- 287 (366)
++ -.+++|...|.+.+|.+.- +. .......+.+++..+..- +.+
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i-~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI-NADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE-ETTT--B-B-BHHHHHGGGGT--
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE-ECCCCCcccCchhHhhccccCCC
Confidence 22 2688899999999998751 11 111111233333322211 111
Q ss_pred -CCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeecc--CCCceEEEEeCCCCcEEEEEecc
Q 017773 288 -GGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRV--GEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 288 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..++++++ +..++++...+.+...... . ..-....+.+-+. ...+..|++-..+|.|++|.+..
T Consensus 225 i~g~vVvvS-e~~irv~~~~~~k~~~K~~-~-------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 225 IPGYVVVVS-ESDIRVFKPPKSKGAHKSF-D-------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp --EEEEEE--SSEEEEE-TT---EEEEE--S-------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred cCcEEEEEc-ccceEEEeCCCCcccceee-c-------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 12444443 5679999988776654432 1 1123334444321 11566889999999999999865
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.15 E-value=0.00038 Score=47.42 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=71.4
Q ss_pred eeEEEEecC-C-CCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 100 LSSLKWKPG-T-SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 100 v~~~~~~~~-~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
|++|++..- . ..+.|++|+.|..|++|+-+ ..+.++.... .|.+++-... ..+ +.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~--~v~~L~~~~~-~~F-~Y~l~NGTVGvY~~~---- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD--KVTSLCSLGG-GRF-AYALANGTVGVYDRS---- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc--ceEEEEEcCC-CEE-EEEecCCEEEEEeCc----
Confidence 566776542 1 23789999999999999754 5667776665 7888887765 444 889999999999854
Q ss_pred ceeEeecCCCCCCCeEEEEE---cCCCCcEEEEEecCCeEE
Q 017773 178 KCVSTVQPSASRSAVCCVEF---HPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~---~~~~~~~l~~~~~d~~i~ 215 (366)
..+...+... .+.++++ ..+|..-|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4445554322 4555544 344556789998888774
No 358
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.11 E-value=0.0017 Score=59.48 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=123.2
Q ss_pred CcEEEEEcCC------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC------CcEEEeeCCCCCCc
Q 017773 111 GRVLGSGDYD------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD------GTMQMWDPRCDGGK 178 (366)
Q Consensus 111 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------g~v~~~d~~~~~~~ 178 (366)
+.+++.|+.+ ..+..+|..++...........+.-.+++... ..+.++|+.| ..+..||...+.-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 5667777766 36788898887544433333333444555553 3555888888 35778888833322
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe-----EEEEecCCCCCCeeEeecccCcEEEEEE--cCCCEEEEEe
Q 017773 179 CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK-----AYAYDVRKMVDPVLVFDGHRKTVTYIRF--LDVDTLVTAG 251 (366)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~~ 251 (366)
.+..+..... .. .++.. ++.+.++|+.||. +-.||.++. ................. .++.+.++||
T Consensus 363 ~~a~M~~~R~--~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 363 PVAPMNTKRS--DF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ccCCccCccc--cc-eeEEE--CCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEECCEEEEEcC
Confidence 2222222211 11 12222 2378899998864 777887764 22222112222222222 2788888888
Q ss_pred CCC------cEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEecCCCe-----EEEEEeecCceEEEEeccc
Q 017773 252 TDG------CLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ-----VFVYDVRWGEPVWVHDFEP 318 (366)
Q Consensus 252 ~d~------~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~ 318 (366)
.++ ++..||..+.. .+..+....... .++. -++.+.+.||.|+. |..||..+.+-...-..
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~---~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-- 509 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV---LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-- 509 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE---ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC--
Confidence 665 46788887653 333332222111 1222 47888888888763 67788776654432111
Q ss_pred ccccCCCCceeeEEEeeccCCCceEEEEeCCCCc-----EEEEEecc
Q 017773 319 VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL-----LHVFVGKK 360 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~-----i~iw~~~~ 360 (366)
......+..+.+ +++..+.|+.||. |..||..+
T Consensus 510 ----~~~rs~~g~~~~-----~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 510 ----TSPRSAVGVVVL-----GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ----ccccccccEEEE-----CCEEEEEecccCccccceeEEcCCCC
Confidence 112222323333 6678888888864 66665543
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.0066 Score=53.35 Aligned_cols=192 Identities=13% Similarity=0.160 Sum_probs=99.3
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe-----EEEE
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV-----CCVE 196 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i-----~~~~ 196 (366)
.|.+|+.. |+.+..+.-..+ .+.++.|..+. .| +.-..||.+++||+. ++....+........| ....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~-~iv~~~wt~~e-~L-vvV~~dG~v~vy~~~---G~~~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSG-RIVGMGWTDDE-EL-VVVQSDGTVRVYDLF---GEFQFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCC-CCEeEEEEECCC-CEEEEEECCCC-eE-EEEEcCCEEEEEeCC---CceeechhhhccccCcccccccccc
Confidence 48999874 555666655554 89999998854 44 555689999999997 3331111111111122 2223
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---c-----ccC-cEEE-EEEc-CCCEEEEEeCCCcEEEEecCCCc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---G-----HRK-TVTY-IRFL-DVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~-----~~~-~v~~-~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
+..+| -.+++ .++.+++.+--........+. . +.- .... ..++ +....+....++.+.+.+-...+
T Consensus 135 ~~~~G-ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 135 FYKNG-IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred cCCCC-EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 33344 33333 445555443222100111110 0 000 0111 1223 34444444455555544432221
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
. +.. .+++..++ +||+++++|.-..+|.+.+...+-.+....+... -......+.|.-
T Consensus 212 ~---i~~-~~~i~~ia--vSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-------~~~~p~~~~WCG 269 (410)
T PF04841_consen 212 Q---IDS-DGPIIKIA--VSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-------SKSPPKQMAWCG 269 (410)
T ss_pred c---ccC-CCCeEEEE--ECCCCCEEEEEECCCCEEEEECcccceeEEeecC-------cCCCCcEEEEEC
Confidence 1 221 23444444 4599999999999999999887666666665543 134456677764
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.0086 Score=54.47 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=42.7
Q ss_pred CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 254 GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
|.|.-+|+.+++.+-+.+........ .+. -.+.+++.++.+|.++.+|.++|++++..++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~-~l~--t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGG-VLA--TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCc-ceE--ECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 46788888888777666532211111 122 24567778888999999999999999988653
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.0004 Score=60.73 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=109.1
Q ss_pred CceeEEEEecCCCCcEEEEE---cCC-CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc--EEEee
Q 017773 98 AKLSSLKWKPGTSGRVLGSG---DYD-GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT--MQMWD 171 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~---~~d-g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~--v~~~d 171 (366)
..+..-+|+|+ +..++-. ... ..+.++++++++......... .-..-+|+|+|+.++++...||. |+++|
T Consensus 193 ~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 193 SLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccceeeccCC--ccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 34566678888 6655433 222 468999999886554443221 34467899999999899888887 45556
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
+. ... ...+. ...+.-..=.|+|+|..++++.+..|. |+++|.... ....+......-..-.|+ ++++++
T Consensus 269 l~--~~~-~~~Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 269 LD--GKN-LPRLT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred CC--CCc-ceecc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCCCCcCccCCCCCCEEE
Confidence 65 343 33332 112223355899999777777777776 455555554 334444333333366777 888887
Q ss_pred EEeC-CCc--EEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 249 TAGT-DGC--LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 249 ~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
..+. +|. |.+.|+.++..+..+.. ......-.++ ++++.+...+.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~--~ng~~i~~~s~ 389 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWA--PNGRMIMFSSG 389 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcC--CCCceEEEecc
Confidence 7664 344 66666666553333332 1112223344 77777665443
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0035 Score=52.33 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=90.2
Q ss_pred ceeEEEEecCCCCcEEEEEcC-----------CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDY-----------DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
..+.+...|+ |.+.++-.. -|.|+.++. .+..+..+..+-. .-+.|+|+|+++.+.++=+..+.|
T Consensus 112 r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 112 RPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCCCCeE
Confidence 4567777887 776665443 133444443 3444444444332 556899999999886666667888
Q ss_pred EEeeCCCCC---CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC-eEEEEecCCCCCCeeEeecccCcEEEEEEc-
Q 017773 168 QMWDPRCDG---GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-KAYAYDVRKMVDPVLVFDGHRKTVTYIRFL- 242 (366)
Q Consensus 168 ~~~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~- 242 (366)
.-|++.... ......+......+..-.++...+| .+.+++...| .|.+|+.+ + +++..+..+...+++++|-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeC
Confidence 888776211 1112122222344567778888888 5665554444 89999998 4 6777777666788889996
Q ss_pred -CCCEEEEE
Q 017773 243 -DVDTLVTA 250 (366)
Q Consensus 243 -~~~~l~~~ 250 (366)
+.+.|+..
T Consensus 265 ~~~~~L~iT 273 (307)
T COG3386 265 PDLNTLYIT 273 (307)
T ss_pred CCcCEEEEE
Confidence 33444433
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.00 E-value=0.0011 Score=61.66 Aligned_cols=146 Identities=10% Similarity=0.110 Sum_probs=97.1
Q ss_pred CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC----CCcEEEEEecCCeEEEEecCCCCCCeeEee
Q 017773 155 PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF----GSSLVAAGCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 155 ~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
..++........|+-.|++ .++.+........ .+|..++-... .+.-.+.|-.++.+..||.|-....+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe--~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLE--RGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ceEeecCCCCCceEEEecC--CCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3444444556789999999 8999999986532 23444433211 113456777889999999997533222211
Q ss_pred ----cccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 231 ----GHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 231 ----~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.......|++-....+||.|+.+|.||+||--..+.-..+.+-..+|..+.++ .||+++++.+. ..|.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt--~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT--ADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec--CCCcEEEEeec-ceEEEEEEe
Confidence 23345677777766789999999999999943333333455666777777777 99999887765 567777763
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0096 Score=51.93 Aligned_cols=202 Identities=13% Similarity=0.043 Sum_probs=134.6
Q ss_pred eeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec--CCCcEEEeeCCCCC
Q 017773 100 LSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS--DDGTMQMWDPRCDG 176 (366)
Q Consensus 100 v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--~dg~v~~~d~~~~~ 176 (366)
-..++.++. +. ..+....+..|.+.|....+......... ....+++.++++.+.++-. .++.+.+.|.. +
T Consensus 76 p~~i~v~~~--~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~--t 149 (381)
T COG3391 76 PAGVAVNPA--GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA--T 149 (381)
T ss_pred ccceeeCCC--CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCC--C
Confidence 356777887 66 44555556899999988777766665554 5678999999988855555 36888888877 6
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-----EeecccCcEEEEEEc-CCCEEEEE
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-----VFDGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
.+......... .+ ..++++|+|...+++-..++.|.+.|.... .... ....... -..+.+. ++..+...
T Consensus 150 ~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 150 NKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVA 224 (381)
T ss_pred CeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCC-CceEEECCCCCEEEEE
Confidence 77777744322 23 899999999556666668999999997664 2221 1222222 3456676 77755444
Q ss_pred eCC---CcEEEEecCCCceeee-eecccceeeeEEEEEecCCCeEEEec-CCCeEEEEEeecCceEEEE
Q 017773 251 GTD---GCLKLWNVNDSRVIRT-YKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 251 ~~d---~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 314 (366)
... +.+...|..++..... +.........+... |+|..+.+.. ..+.+.+.|..+.......
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~--p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD--PAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeEC--CCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 433 5899999888766655 22222122234444 9999988874 4488999998877666554
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.001 Score=57.61 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=99.6
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCc--e----EEEecCCCcEEEeeCCCCCCceeEeecC
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV--L----GASGSDDGTMQMWDPRCDGGKCVSTVQP 185 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l----~~~~~~dg~v~~~d~~~~~~~~~~~~~~ 185 (366)
-+|.++.....++-.|++.|+.+.+.+.+.+ |.-+.+.|+.+. + -+.|-.+..|.-||++.+....+...+.
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3445566667788899999999999988874 667777776321 1 1456678899999998443322222221
Q ss_pred --CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 186 --SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 186 --~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
........|.+-..+| ++++|+.+|.|++||- .+......+++-..+|..+..+ +|++++..+ +..+.+-++
T Consensus 425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 1223356677777666 8999999999999997 4334556677788899999998 888877665 455666655
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.92 E-value=0.0017 Score=44.31 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=67.6
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
.|..+|.+.|++|+.|..|++|+-. ..+..+.. ...|++++-..+..|+.+-.+|+|-+|+-. ..+-.++....
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~ 82 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQ 82 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCC
Confidence 3455666899999999999999854 35555553 466788877766889999999999999853 33444444333
Q ss_pred eeeeEEEEEecCC-CeEEEecCCCeEEE
Q 017773 276 NRNFVGLSVWRHG-GLLGCGSETNQVFV 302 (366)
Q Consensus 276 ~~~~~~~~~~~~~-~~l~~~~~dg~i~i 302 (366)
.+....+...-|| .-|++|-.+|.|-+
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3333333322233 36888888887753
No 367
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.92 E-value=0.012 Score=51.13 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=55.3
Q ss_pred CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccce-eeeEEEEEecCC----------------C-eEEEe
Q 017773 234 KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN-RNFVGLSVWRHG----------------G-LLGCG 294 (366)
Q Consensus 234 ~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~-~l~~~ 294 (366)
..+.+++.+ .+.+.++...=|+|.++|+.++..++.+++..+. +..+... .+.. . +++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~-~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVP-EEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEee-cccccccccccccCCCCcceEEEEEEe
Confidence 446777777 6777777777789999999999999888875432 1111111 0111 1 23345
Q ss_pred cCCCeEEEEEeecCceEEEEec
Q 017773 295 SETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
-.-|.|.||.+++|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5678999999999888777654
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.91 E-value=0.021 Score=53.60 Aligned_cols=228 Identities=11% Similarity=0.122 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCC--------------CcEEEeeCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--------------GTMQMWDPRC 174 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--------------g~v~~~d~~~ 174 (366)
...|+++. .+.+++.-++.-+ .++++..+. ....+++.+....+ .+.+.- ..++++|-.
T Consensus 684 ~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~--~prrI~~q~~sl~~-~v~s~r~e~~~~~~~ee~~~s~l~vlD~n- 758 (1096)
T KOG1897|consen 684 PDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE--SPRRICYQESSLTF-GVLSNRIESSAEYYGEEYEVSFLRVLDQN- 758 (1096)
T ss_pred CceEEEec-CCceEEEEecchhhcceeeecCCC--ChhheEecccceEE-EEEecccccchhhcCCcceEEEEEEecCC-
Confidence 34455554 3456666554322 223333333 56677777633333 333221 135666655
Q ss_pred CCCceeEeecCCC--CCCCeEEEEEcCCCCcEEEEEec----------CCeEEEEecCCCCCCeeEeecc--cCcEEEEE
Q 017773 175 DGGKCVSTVQPSA--SRSAVCCVEFHPFGSSLVAAGCA----------DKKAYAYDVRKMVDPVLVFDGH--RKTVTYIR 240 (366)
Q Consensus 175 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~ 240 (366)
+.+.+...+... ....+.++.|..+.+.++++|+. .|.|.+|..... +.++....+ ++.+.++.
T Consensus 759 -Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~ 836 (1096)
T KOG1897|consen 759 -TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALV 836 (1096)
T ss_pred -ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehh
Confidence 444444443322 12245566687774478888753 578888888773 344443322 34555554
Q ss_pred EcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc--eEEEEeccc
Q 017773 241 FLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE--PVWVHDFEP 318 (366)
Q Consensus 241 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 318 (366)
.-+++++|.- ...|++|+..+.+.++.-..+..++..+.+. -.|..++.|..=+++.+...+..+ ....-+
T Consensus 837 ~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~--v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--- 909 (1096)
T KOG1897|consen 837 EFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQ--VKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--- 909 (1096)
T ss_pred hhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEE--ecCcEEEEeeccceEEEEEEeccCCceEEeeh---
Confidence 4477766554 5689999999887777766777777777776 789999999888888777665433 322111
Q ss_pred ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 319 VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.-+..+.+++.+- ++..++-+..+|.+.+-..++
T Consensus 910 ----D~~p~Wmtaveil----~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 910 ----DYNPNWMTAVEIL----DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ----hhCccceeeEEEe----cCceEEeecccccEEEEEecC
Confidence 3356788888887 444666677788887766543
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=2e-05 Score=60.36 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=83.5
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
..-+.||.|.-++++.....+.... .+.+..--+....-+++|+.+|.|++|...........+..-...+.+
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~-------~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSER-------FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhh-------hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccccccee
Confidence 4556788888888772111111111 122222222233678999999999999887443333333333344444
Q ss_pred EEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeeccc-ceeeeEEEEEecCCCeEEEe--cCCCeEEEEEeec
Q 017773 239 IRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-NNRNFVGLSVWRHGGLLGCG--SETNQVFVYDVRW 307 (366)
Q Consensus 239 ~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 307 (366)
+.-. ++.+..+++.||.|+.|++.-.+.+.....|. .+....... ..+++++.+ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 4333 56688999999999999998887776666665 333222222 455666666 6666777777653
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.011 Score=49.41 Aligned_cols=220 Identities=15% Similarity=0.070 Sum_probs=124.6
Q ss_pred EECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 017773 49 EFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYD 127 (366)
Q Consensus 49 ~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~ 127 (366)
.|.++.. ++.+--..+.|.-|+..++.... +. +++.+.++..... +..|+++. .-+.+++
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~----~~-----------~p~~~~~~~~~d~--~g~Lv~~~--~g~~~~~ 91 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV----FP-----------SPGGFSSGALIDA--GGRLIACE--HGVRLLD 91 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE----EE-----------CCCCcccceeecC--CCeEEEEc--cccEEEe
Confidence 3556665 44444456778888876543211 11 1233555555544 55666553 3366777
Q ss_pred CCCCceeEeee----cCCCCceeeEEeccCCCceEEEec-----C-----CCcEEEeeCCCCCCceeEeecCCCCCCCeE
Q 017773 128 LEKKVPIFERD----EHGGRRVWSVDYSKGDPVLGASGS-----D-----DGTMQMWDPRCDGGKCVSTVQPSASRSAVC 193 (366)
Q Consensus 128 ~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~-----~-----dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~ 193 (366)
.+.+..+..+. .......+.+...|+|...+-+.+ . -|.|+.+|.. +...+.+. .+-...+
T Consensus 92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~--~~~~~~N 166 (307)
T COG3386 92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLD--DDLTIPN 166 (307)
T ss_pred ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeec--CcEEecC
Confidence 76655422221 122225667888888876632222 1 1334444432 33444433 2234667
Q ss_pred EEEEcCCCCcEEEEEecCCeEEEEecCC--C---CC-CeeEeecccCcEEEEEEc-CCCEEEEEeCCC-cEEEEecCCCc
Q 017773 194 CVEFHPFGSSLVAAGCADKKAYAYDVRK--M---VD-PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG-CLKLWNVNDSR 265 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~---~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~iwd~~~~~ 265 (366)
.|+|+|++..++++=+..+.|.-|++.. . .+ ....+....+..-.++.. ++.+.+++..+| .|.+|+.. ++
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 8999999965555555668898888762 1 11 122222334556667776 777765555444 89999988 99
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
++..+..+...+++++|. .|+.+.|+..
T Consensus 246 l~~~i~lP~~~~t~~~Fg-G~~~~~L~iT 273 (307)
T COG3386 246 LLGEIKLPVKRPTNPAFG-GPDLNTLYIT 273 (307)
T ss_pred EEEEEECCCCCCccceEe-CCCcCEEEEE
Confidence 999888775666666665 2444544433
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0001 Score=64.66 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=75.9
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCcee-eEEeccCCCceEEEecCCCcEEEeeCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVW-SVDYSKGDPVLGASGSDDGTMQMWDPRCDG 176 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~ 176 (366)
..+.-+.|+|. -.++|.+..+|.|.+..++ -+.+.++..+.. +++ +++|.|+|+.+ +.|-.||+|++.|.. +
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-~v~~sL~W~~DGkll-aVg~kdG~I~L~Dve--~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-NVTASLCWRPDGKLL-AVGFKDGTIRLHDVE--K 93 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec-cceeEeccCCCC-ccceeeeecCCCCEE-EEEecCCeEEEEEcc--C
Confidence 45888999999 9999999999999999988 666777876665 666 99999998877 999999999999999 5
Q ss_pred CceeEeecCCCCCCCeEEEEEcC
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+..+.... ......|.++-|.|
T Consensus 94 ~~~l~~~~-~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFL-FSVETDISKGIWDR 115 (665)
T ss_pred CCceeccc-cccccchheeeccc
Confidence 66555531 12344788888875
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.84 E-value=0.0055 Score=56.24 Aligned_cols=216 Identities=9% Similarity=0.024 Sum_probs=105.7
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC------CcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD------GTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
.+..||..+++....-.......-.+++.. +..+++.|+.+ ..+..||+. .......-......... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~--~n~W~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIE--NKIHVELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECC--CCeEeeCCCCcchhhce-eE
Confidence 567788877653322111111011222322 34455777753 347788887 33322111111111122 22
Q ss_pred EEcCCCCcEEEEEecCC-----eEEEEecCCCCCCeeEeecccCcE--EEEEEcCCCEEEEEeCCC--------------
Q 017773 196 EFHPFGSSLVAAGCADK-----KAYAYDVRKMVDPVLVFDGHRKTV--TYIRFLDVDTLVTAGTDG-------------- 254 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~d~-------------- 254 (366)
+.. +| .+.+.|+.++ .+..||..+. ..........+. .+++..++.+.+.||.++
T Consensus 348 ~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 348 AVI-DD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred EEE-CC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence 222 34 7888887654 4788998764 222222111111 122222777888887653
Q ss_pred ---------cEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEecCC------CeEEEEEeec-CceEEEEec
Q 017773 255 ---------CLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET------NQVFVYDVRW-GEPVWVHDF 316 (366)
Q Consensus 255 ---------~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~ 316 (366)
.+..||..+.+ .+..+....... .++ . -++++.+.|+.+ ..+..||..+ .+-...-..
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-S--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-E--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence 46778877653 222222111111 122 2 367777777654 2467788776 332211111
Q ss_pred ccccccCCCCceeeEEEeeccCCCceEEEEeCCCC--cEEEEEeccc
Q 017773 317 EPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG--LLHVFVGKKK 361 (366)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~ 361 (366)
.........+++ +++..+.||.|| .+..||..+.
T Consensus 500 ------~~~r~~~~~~~~-----~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 500 ------ESRLSALHTILH-----DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ------CcccccceeEEE-----CCEEEEEeeecceeehhhcCcccc
Confidence 112222333333 778999999888 7778887664
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.018 Score=50.25 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=146.7
Q ss_pred eeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc
Q 017773 100 LSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK 178 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~ 178 (366)
...+...|. +..+.... ....+...+.............. ..-..++.++.+..+.+....++.|.+.|.. ...
T Consensus 33 ~~~v~~~~~--g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~--~~~ 107 (381)
T COG3391 33 PGGVAVNPD--GTQVYVANSGSNDVSVIDATSNTVTQSLSVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA--TNT 107 (381)
T ss_pred CceeEEcCc--cCEEEEEeecCceeeecccccceeeeeccCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCc--ccc
Confidence 455677777 64443332 22245555544222222111111 1455788888888776777778999999977 556
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE-EEeCCC
Q 017773 179 CVSTVQPSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV-TAGTDG 254 (366)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~ 254 (366)
......... ....++++|++..+.++-. .++.+.+.|..+. +.......-..+ ..+++. +++.++ +-..++
T Consensus 108 ~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 108 VLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred eeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCCC
Confidence 666555332 6778999999855555544 3789999998887 455554433345 788888 777554 445788
Q ss_pred cEEEEecCCCceee-e----eecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEecccccccCCCC
Q 017773 255 CLKLWNVNDSRVIR-T----YKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVTAAGSER 326 (366)
Q Consensus 255 ~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
.|.+.|........ . ......+ ..+.+. |+|..+...... +.+...|..++........ .+-.
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~--~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~ 253 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVD--PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG 253 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCC-ceEEEC--CCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC
Confidence 99999976665542 1 2222222 344555 899876655443 5888888887766654110 1111
Q ss_pred ceeeEEEeeccCCCceEEEEeCC-CCcEEEEEeccc
Q 017773 327 GFVSSVCWRRVGEDECTLVAGGS-DGLLHVFVGKKK 361 (366)
Q Consensus 327 ~~v~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~ 361 (366)
....+..+| +|..+..... .+.+.+-|..+.
T Consensus 254 -~~~~v~~~p---~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 254 -APRGVAVDP---AGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred -CCCceeECC---CCCEEEEEecCCCeEEEEeCCCC
Confidence 455678888 7777777633 467777776553
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.79 E-value=0.033 Score=52.33 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=68.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCC----cEEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSG----RVLGS 116 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~ 116 (366)
..+.++..+.+.+...++.++.++.+...++....... ..|.. -...|.|+.++|-+++ ++++.
T Consensus 486 ~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e-----~~~~~-------~e~evaCLDisp~~d~~~~s~~~aV 553 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLRE-----VSHKE-------FEYEVACLDISPLGDAPNKSRLLAV 553 (1096)
T ss_pred CCCceEEEEEeecceEEEEecCccEEEEEEeeccceee-----eeehe-------ecceeEEEecccCCCCCCcceEEEE
Confidence 45556666666666677777767766666666544211 11111 1246999999976322 37888
Q ss_pred EcCCCcEEEEeC-CCCceeEeeecC-C--CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 117 GDYDGVVMEYDL-EKKVPIFERDEH-G--GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 117 ~~~dg~i~iw~~-~~~~~~~~~~~~-~--~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
|..+..+.+.-. .....+...... . .+.|.-.++-.+..+| .++..||.+..|-+...++
T Consensus 554 G~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yL-lvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 554 GLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYL-LVALGDGALLYFVLDINTG 617 (1096)
T ss_pred EeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEE-EEEcCCceEEEEEEEcccc
Confidence 876665554432 222222211111 1 1245555555555555 8888999988776653333
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0057 Score=48.94 Aligned_cols=213 Identities=19% Similarity=0.187 Sum_probs=119.1
Q ss_pred ceeeEEeccCCCceEEEecCCCc-EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-----CCeEEEE
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGT-MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-----DKKAYAY 217 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~-v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~i~i~ 217 (366)
.-..|+++|..+.-++.+-.-|+ ..++|.. ..+....+......-.---=.|+|+| .+|++.-. -|.|-+|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~--~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPN--GAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCC--CCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEE
Confidence 45678899987776677766665 5688988 44444443322111122223689999 56665433 3779999
Q ss_pred ecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeC------------------CCcEEEEecCCCceeeeeec----cc
Q 017773 218 DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGT------------------DGCLKLWNVNDSRVIRTYKG----HV 274 (366)
Q Consensus 218 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~----~~ 274 (366)
|.+...+.+-.+..|.-.-..+.+. ||..++.+.. .-.+.+.|..+++++.+..- +.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 9998767777888888777888888 8888877642 11234445455554443321 22
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCe-----EEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQ-----VFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
..+.-++.. +||..++.+-..|. -.+=....++++..+..++.. ...-...|-+++.+. .++...+|.=.
T Consensus 226 lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~-~~~~anYigsiA~n~--~~glV~lTSP~ 300 (366)
T COG3490 226 LSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ-TAAFANYIGSIAANR--RDGLVALTSPR 300 (366)
T ss_pred cceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH-HHHHHhhhhheeecc--cCCeEEEecCC
Confidence 233444444 56655544422211 111112334444444333211 111234566777764 13444445445
Q ss_pred CCcEEEEEecccCCC
Q 017773 350 DGLLHVFVGKKKPLS 364 (366)
Q Consensus 350 dg~i~iw~~~~~~l~ 364 (366)
-+..-+||.+++.+.
T Consensus 301 GN~~vi~da~tG~vv 315 (366)
T COG3490 301 GNRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEEEcCCCcEE
Confidence 566789999887654
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.74 E-value=0.015 Score=46.80 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=121.4
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 211 (366)
+.+++.....-...+.|..++..+ -+.+.-| .|+.+|+. +++.......+. ...-..++...+ .+..-.=.+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~Ly-ESTG~yG~S~l~~~d~~--tg~~~~~~~l~~-~~FgEGit~~~d--~l~qLTWk~ 109 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLY-ESTGLYGQSSLRKVDLE--TGKVLQSVPLPP-RYFGEGITILGD--KLYQLTWKE 109 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEE-EEECSTTEEEEEEEETT--TSSEEEEEE-TT-T--EEEEEEETT--EEEEEESSS
T ss_pred EEECCCCCcccCccEEecCCCEEE-EeCCCCCcEEEEEEECC--CCcEEEEEECCc-cccceeEEEECC--EEEEEEecC
Confidence 444443333345577886656544 6666655 68899998 777776666543 223445555543 455556688
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc--cee---eeEEEEEec
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--NNR---NFVGLSVWR 286 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~---~~~~~~~~~ 286 (366)
+...+||..+. +.+.++.- .+.=..++. +++.|+.+.....+.++|..+.+...++.... .++ +-+-+.
T Consensus 110 ~~~f~yd~~tl-~~~~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--- 183 (264)
T PF05096_consen 110 GTGFVYDPNTL-KKIGTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--- 183 (264)
T ss_dssp SEEEEEETTTT-EEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE---
T ss_pred CeEEEEccccc-eEEEEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE---
Confidence 99999999887 56666653 345566664 66677777777889999998887777765432 222 223343
Q ss_pred CCCeEEEecCCCeEEEEEeecCceEEEEeccccccc-------CCCCceeeEEEeeccCCCceEEEEe
Q 017773 287 HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA-------GSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 287 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
+|...|=.=....|...|..+|+....+++...... .......+.|||.|. .+++++||
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~--~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE--TDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT--TTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC--CCEEEEEe
Confidence 677777666777899999999999888876543211 112467899999984 33566666
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=5.9e-05 Score=57.83 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=82.1
Q ss_pred EEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCc-eeeeeecccceeeeEEE
Q 017773 204 LVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSR-VIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 282 (366)
.+..-+.+|.|.-++++......+...-+.....-+. -+..++.|+.+|.|.+|...... ....+..-...+ .+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i-~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI-DLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhcccccc-eecc
Confidence 4444567888888887764222222222322211111 45678999999999999876321 111111111122 1122
Q ss_pred EEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCC-ceeeEEEeeccCCCceEEEEe--CCCCcEEEEEec
Q 017773 283 SVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSER-GFVSSVCWRRVGEDECTLVAG--GSDGLLHVFVGK 359 (366)
Q Consensus 283 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~--~~dg~i~iw~~~ 359 (366)
..-.++.+..++..||.|+.|++.-++.+... ..|. .++..+..+. .+++++.+ |.|..++.|+++
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--------g~h~~~~~e~~ivv~---sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--------GQHNFESGEELIVVG---SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeee--------ccccCCCcceeEEec---CCceEEeeccccchhhhhcchh
Confidence 11135568889999999999999877666443 3344 4444444444 44566666 777777777765
Q ss_pred c
Q 017773 360 K 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 178 ~ 178 (238)
T KOG2444|consen 178 K 178 (238)
T ss_pred h
Confidence 4
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00017 Score=63.40 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCcee-EEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLS-SLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d 120 (366)
.-.|.-+.|+|.-.++|++..+|.|.+..+.- +... ++.-+ ..+++ +++|.|+ |+.||.|-.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qRlw---tip~p----------~~~v~~sL~W~~D--GkllaVg~kd 83 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-QRLW---TIPIP----------GENVTASLCWRPD--GKLLAVGFKD 83 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-ceeE---eccCC----------CCccceeeeecCC--CCEEEEEecC
Confidence 45688999999999999999999888877662 2211 22212 23455 9999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEecc
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK 152 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~ 152 (366)
|+|++-|.+++..+..........|.++-|.+
T Consensus 84 G~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999998877664333333788888864
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0058 Score=53.12 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=103.8
Q ss_pred EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC------cEEEEEecCCeEEEEecCC
Q 017773 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS------SLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 148 i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~l~~~~~d~~i~i~d~~~ 221 (366)
+....+...++.++.....++-.|++ .++.+....... .|+-+.+.|+.. ..-+.|-.+..|.-||.|-
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE--~GKIVeEWk~~~---di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIE--RGKIVEEWKFED---DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecc--cceeeeEeeccC---CcceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 34444556666777777788888988 899999888544 377777777642 1234566889999999986
Q ss_pred CCC-CeeEeeccc----CcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 222 MVD-PVLVFDGHR----KTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 222 ~~~-~~~~~~~~~----~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
..+ .+.....|. ....|.+-....++++|+.+|.||+||--..+.-..+++-..+|..+..+ .+|+++++.+.
T Consensus 414 ~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt--adGKwil~Tc~ 491 (644)
T KOG2395|consen 414 QGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT--ADGKWILATCK 491 (644)
T ss_pred cCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee--ccCcEEEEecc
Confidence 543 222333332 23445554566799999999999999973334444567777788888877 89999877654
Q ss_pred CCeEEEEEee
Q 017773 297 TNQVFVYDVR 306 (366)
Q Consensus 297 dg~i~iwd~~ 306 (366)
..+.+.++.
T Consensus 492 -tyLlLi~t~ 500 (644)
T KOG2395|consen 492 -TYLLLIDTL 500 (644)
T ss_pred -cEEEEEEEe
Confidence 567777664
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0004 Score=64.91 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=77.3
Q ss_pred cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEE
Q 017773 203 SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVG 281 (366)
Q Consensus 203 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (366)
-.++.|+..|.+-..|.+..-.+...-..-.++|++++|+ +|..++.|-.+|.|.+||+..+++++.+..|..+...+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 5788899999999999887533333334456899999999 999999999999999999999999988887666554432
Q ss_pred -EEEecCCCeEEEecCCCeEEEEEe
Q 017773 282 -LSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 282 -~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
.-+..++..+.++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 223356667888877775 6654
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.60 E-value=0.028 Score=48.33 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCEEEEee-cCCeEEEEEceecccccceeeeecCceece-eeeecCCceeEEEEecCCCCcEEEEEc------CCCcEEE
Q 017773 54 DSVFATGG-IARKIRIYNIKSVLVDHPVVAVVDHSKVCD-YYICTPAKLSSLKWKPGTSGRVLGSGD------YDGVVME 125 (366)
Q Consensus 54 ~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~i~i 125 (366)
.++|+..+ ..+.|.|.|+.+......+........... .-. +.-..+.-.|+ |+.++++- .-|-+.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~---s~PHT~Hclp~--G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL---SRPHTVHCLPD--GRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E---EEEEEEEE-SS----EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC---CCCceeeecCC--ccEEEEeccCCCCCCCCcEEE
Confidence 45666665 678899999985433322222211100000 000 01222333456 87887752 2356778
Q ss_pred EeCCCCceeEeeecCCC--CceeeEEeccCCCceEEEecC--------------------CCcEEEeeCCCCCCceeEee
Q 017773 126 YDLEKKVPIFERDEHGG--RRVWSVDYSKGDPVLGASGSD--------------------DGTMQMWDPRCDGGKCVSTV 183 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~~--------------------dg~v~~~d~~~~~~~~~~~~ 183 (366)
.|-++.+.......... .--..+-|.|..+.+ ++... ..++.+||+. +.+.++++
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvM-iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~--~r~~~Q~i 238 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVM-ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS--TRKLLQTI 238 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEE-EE-B---HHHHTT---TTTHHHH-S--EEEEEETT--TTEEEEEE
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEE-EEeccCChhhcccCCChhHhhcccccCeEEEEECC--CCcEeeEE
Confidence 88777666555544222 134566677755544 55432 3579999999 88899998
Q ss_pred cCCCCCCCeEEEEEc--CCCCcEEEEEecCCeEEEEec-CCCC---CCeeEeec-----------------ccCcEEEEE
Q 017773 184 QPSASRSAVCCVEFH--PFGSSLVAAGCADKKAYAYDV-RKMV---DPVLVFDG-----------------HRKTVTYIR 240 (366)
Q Consensus 184 ~~~~~~~~i~~~~~~--~~~~~~l~~~~~d~~i~i~d~-~~~~---~~~~~~~~-----------------~~~~v~~~~ 240 (366)
........+..+.|. |+...-++.+.-..+|..|-- +.+. +.+..+.. -..-++.|.
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 876443456677774 444233333334555555533 2220 01111111 134578899
Q ss_pred Ec-CCCEEEE-EeCCCcEEEEecCCC
Q 017773 241 FL-DVDTLVT-AGTDGCLKLWNVNDS 264 (366)
Q Consensus 241 ~~-~~~~l~~-~~~d~~i~iwd~~~~ 264 (366)
.| ++++|.. +-.+|.|+.||+...
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EccCCCEEEEEcccCCcEEEEecCCC
Confidence 99 8887755 457999999999875
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.59 E-value=0.012 Score=54.10 Aligned_cols=231 Identities=20% Similarity=0.212 Sum_probs=121.2
Q ss_pred CCCCCEEEEeecCC------eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC----
Q 017773 51 DPSDSVFATGGIAR------KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD---- 120 (366)
Q Consensus 51 s~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---- 120 (366)
+..+.+++.||.++ .+..||..+..-.. ...+. .+..-.+++... +...++|+.|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-----------~~r~~~~~~~~~---~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-----------SPRCRVGVAVLN---GKLYVVGGYDSGSD 346 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-----------cccccccEEEEC---CEEEEEccccCCCc
Confidence 34466788888774 57777776642211 00001 112234555554 6788888888
Q ss_pred --CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc-----EEEeeCCCCCCceeEeecCCCCCCCeE
Q 017773 121 --GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT-----MQMWDPRCDGGKCVSTVQPSASRSAVC 193 (366)
Q Consensus 121 --g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~-----v~~~d~~~~~~~~~~~~~~~~~~~~i~ 193 (366)
..+..||..+++-...-.-...+.-.+++. -+..+.+.|+.||. +..||..++....+..+... .....
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r~~~g 422 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHG 422 (571)
T ss_pred ccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--eeeeE
Confidence 357788888776433222222111112222 24445588988864 77788874333333333221 11222
Q ss_pred EEEEcCCCCcEEEEEecCC------eEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEEEeCCCc-----EEEEe
Q 017773 194 CVEFHPFGSSLVAAGCADK------KAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVTAGTDGC-----LKLWN 260 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~d~~-----i~iwd 260 (366)
.+.+ +| .+.++|+.++ ++..||..+. .......-. ..-..++..++.+++.||.|+. |..||
T Consensus 423 v~~~--~g-~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 423 VAVL--GG-KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEE--CC-EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc
Confidence 2222 23 7888887554 5678888765 111111111 1112244447888889988873 67788
Q ss_pred cCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCCC-----eEEEEEeecCc
Q 017773 261 VNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN-----QVFVYDVRWGE 309 (366)
Q Consensus 261 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 309 (366)
..+.+- +..+......+.+.. -++...+.|+.|| +|..||..+.+
T Consensus 498 p~~~~W~~v~~m~~~rs~~g~~~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSPRSAVGVVV----LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCCCceeEcccCccccccccEEE----ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 776543 222222222222222 3577788888776 46666655443
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00015 Score=39.15 Aligned_cols=30 Identities=13% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYN 70 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~ 70 (366)
|...|.++.|+|+++++++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 788999999999999999999999999996
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.028 Score=45.18 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=131.2
Q ss_pred CceEEEEECCCC-CEEEEeecCCe-EEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC-
Q 017773 43 DSIGVIEFDPSD-SVFATGGIARK-IRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY- 119 (366)
Q Consensus 43 ~~i~~~~~s~~~-~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~- 119 (366)
..-..|+|+|.- .-++.+-.-|+ ..++|....+.........+ +-+.+| =.|+|+ |.+|+..-.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-----RHfyGH------Gvfs~d--G~~LYATEnd 134 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-----RHFYGH------GVFSPD--GRLLYATEND 134 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-----ceeecc------cccCCC--CcEEEeecCC
Confidence 334557777754 34555555554 56788877666542221111 123333 358998 999987643
Q ss_pred ----CCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEec------CCC-----------cEEEeeCCCCCC
Q 017773 120 ----DGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGS------DDG-----------TMQMWDPRCDGG 177 (366)
Q Consensus 120 ----dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------~dg-----------~v~~~d~~~~~~ 177 (366)
.|.|-+||...+ +.+.++..|.- .-..+.+.+||+.+++..+ .-| ++.+.|.. ++
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~Gi-GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a--tG 211 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGI-GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA--TG 211 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCc-CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc--cc
Confidence 378999999865 45666766665 6678999999998844432 001 23333433 34
Q ss_pred ceeEeecCC--CCCCCeEEEEEcCCCCcEEEEEecCCeE----EEEecCCCCCCeeEeec-------ccCcEEEEEEc--
Q 017773 178 KCVSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCADKKA----YAYDVRKMVDPVLVFDG-------HRKTVTYIRFL-- 242 (366)
Q Consensus 178 ~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i----~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~-- 242 (366)
+.+.+...+ .+.-.+.-++..++| .+++.+-..|.- -+.-.....+++..+.. ....|-+++.+
T Consensus 212 ~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred chhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 444333333 344567778888887 444443222210 00000111123222221 23456778887
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
++-..+|+-..+...+||..++..+..-.-. . +..+. +...=++..+.+|.+.++.
T Consensus 291 ~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--d--aaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 291 DGLVALTSPRGNRAVIWDAATGAVVSEAALP--D--AAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCeEEEecCCCCeEEEEEcCCCcEEeccccc--c--cccce--eccCceEEecCCceEEecc
Confidence 4444455556667889999999877554322 1 22222 3344455555678888774
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.56 E-value=0.0047 Score=56.69 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=94.4
Q ss_pred CcEEEEEcCC------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-----cEEEeeCCCCCCce
Q 017773 111 GRVLGSGDYD------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-----TMQMWDPRCDGGKC 179 (366)
Q Consensus 111 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-----~v~~~d~~~~~~~~ 179 (366)
+.+++.|+.+ ..+..||+.++.-...-.....+.-.+++.. ++ .+.+.|+.++ .+..||..++.-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 6677777753 3477888877643221111111111122222 24 4447777654 47889988322222
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----------------------CeEEEEecCCCCCCeeEeecc-cCc
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----------------------KKAYAYDVRKMVDPVLVFDGH-RKT 235 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------------------~~i~i~d~~~~~~~~~~~~~~-~~~ 235 (366)
+..+. ........+.. +| .+.+.|+.+ ..+..||.++. .......- ...
T Consensus 382 ~~~mp--~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r 454 (557)
T PHA02713 382 LPDMP--IALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGT 454 (557)
T ss_pred CCCCC--cccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCccc
Confidence 22222 11112222222 34 777777754 24778887764 11111111 111
Q ss_pred -EEEEEEcCCCEEEEEeCCC------cEEEEecCC-C--ceeeeeecccceeeeEEEEEecCCCeEEEecCCC--eEEEE
Q 017773 236 -VTYIRFLDVDTLVTAGTDG------CLKLWNVND-S--RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN--QVFVY 303 (366)
Q Consensus 236 -v~~~~~~~~~~l~~~~~d~------~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iw 303 (366)
-.+++..++++.+.|+.++ .+..||..+ . ..+..+........ ++. -++++.++|+.++ .+..|
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~---~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TIL---HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce-eEE---ECCEEEEEeeecceeehhhc
Confidence 1123333777778887542 467899886 3 34444443322221 222 3788889999888 67777
Q ss_pred EeecCc
Q 017773 304 DVRWGE 309 (366)
Q Consensus 304 d~~~~~ 309 (366)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 776554
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.53 E-value=0.026 Score=43.98 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=113.4
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEe-eecCCCCceeeEEecc-CCCceEEEec-CCCcEEEeeCCCCCCceeEe---ec
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFE-RDEHGGRRVWSVDYSK-GDPVLGASGS-DDGTMQMWDPRCDGGKCVST---VQ 184 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~v~~i~~~~-~~~~l~~~~~-~dg~v~~~d~~~~~~~~~~~---~~ 184 (366)
+.++.+--..|.|.-||....+.... +.+. ++.++.+-- ++...++++. ..-.|.-||...+......+ ++
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p---~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP---PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC---cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 45555555567777798877653332 2222 233333322 2222223333 22234457744223333333 22
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEec-C---------CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeC
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCA-D---------KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGT 252 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~ 252 (366)
........+.-..+|+| ++ ..|.. | |.++.|-... .+..+...-.--+.++|+ +.+.+ ++-+.
T Consensus 104 ~d~kknR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred chHHhcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccC
Confidence 22234466677889998 55 34432 1 3344443322 122222222334678887 55544 56667
Q ss_pred CCcEEEEe--cCCC-----ceeeeeecc----cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccc
Q 017773 253 DGCLKLWN--VNDS-----RVIRTYKGH----VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTA 321 (366)
Q Consensus 253 d~~i~iwd--~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 321 (366)
+-+|.-|| ..++ +.+..++.. ....-.+++. .+|.+.++.-..++|...|..+|+.+.++.++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID--~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP---- 252 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID--TEGNLYVATFNGGTVQKVDPTTGKILLEIKLP---- 252 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc--cCCcEEEEEecCcEEEEECCCCCcEEEEEEcC----
Confidence 77887787 4444 223333220 0111234444 67888888888899999999999999998775
Q ss_pred cCCCCceeeEEEeec
Q 017773 322 AGSERGFVSSVCWRR 336 (366)
Q Consensus 322 ~~~~~~~v~~~~~~~ 336 (366)
...|++++|--
T Consensus 253 ----t~qitsccFgG 263 (310)
T KOG4499|consen 253 ----TPQITSCCFGG 263 (310)
T ss_pred ----CCceEEEEecC
Confidence 46799999964
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.038 Score=44.76 Aligned_cols=170 Identities=13% Similarity=0.092 Sum_probs=107.0
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG 176 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~ 176 (366)
...+.++.|+|+ .+.|++......-.++=-..|+.+.++.-..-.....|.+..++++. ++--.++.+.++.+..++
T Consensus 85 ~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv-i~dER~~~l~~~~vd~~t 161 (316)
T COG3204 85 TANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV-IVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccceeeCCC--cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE-EEehhcceEEEEEEcCCc
Confidence 345999999999 77777777676666666667888877655433356678888777665 777778888888887321
Q ss_pred Cc-----eeEeecCCCC-CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee--Eeecc-------cCcEEEEEE
Q 017773 177 GK-----CVSTVQPSAS-RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL--VFDGH-------RKTVTYIRF 241 (366)
Q Consensus 177 ~~-----~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~-------~~~v~~~~~ 241 (366)
.. ....+....+ ......++|.|.+ ..+..+-+-.-+.||.......... ....+ -..+.++.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 11 0111111122 5578899999998 5666665666677776654321111 11111 124566777
Q ss_pred c--CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 242 L--DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 242 ~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
. .+.+|+-+..++.+.-.|.. ++++..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 6 56677777788877777754 44454443
No 388
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.064 Score=47.29 Aligned_cols=171 Identities=11% Similarity=0.115 Sum_probs=86.0
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeec--CCC----CceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE--HGG----RRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~----~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
+.|.++.|+.+ ..|+....||.++++|+.... ...+.. ... ..+....+..+| + +.-..++.+.+..
T Consensus 81 ~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--i-vvLt~~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--I-VVLTGNNRFYVVN 153 (410)
T ss_pred CCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--E-EEECCCCeEEEEe
Confidence 46999999885 445566679999999986433 111110 011 022222333333 2 2223345554443
Q ss_pred CCCCCCc-eeEee-cCCCCCC------CeEE-EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc
Q 017773 172 PRCDGGK-CVSTV-QPSASRS------AVCC-VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL 242 (366)
Q Consensus 172 ~~~~~~~-~~~~~-~~~~~~~------~i~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 242 (366)
-. ... ..+.+ ..+.... .... ..++.+. ...+....++.+.+.+-... +. +. ..+++..|+.|
T Consensus 154 n~--~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~-~~---i~-~~~~i~~iavS 225 (410)
T PF04841_consen 154 NI--DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF-KQ---ID-SDGPIIKIAVS 225 (410)
T ss_pred Cc--cccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc-cc---cc-CCCCeEEEEEC
Confidence 22 111 11111 1111000 0000 1233333 23333334555654443322 11 21 24689999999
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCceeeeeecc-cceeeeEEEE
Q 017773 243 -DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH-VNNRNFVGLS 283 (366)
Q Consensus 243 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 283 (366)
++++++.-..+|.+.+....-.+.+.++... ......+.|+
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 9999999999999999887666666666544 2233445555
No 389
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.48 E-value=0.035 Score=51.10 Aligned_cols=188 Identities=11% Similarity=0.059 Sum_probs=99.0
Q ss_pred CCCceEEEEECCCCCEEEEee------cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGG------IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 114 (366)
....+.+.+++|+|+.+|..- .|..-.||-...+.... .+... ...+.-.|+|+ |..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~---~lt~g-----------~~~t~PsWspD--G~~l 411 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV---QVLEG-----------HSLTRPSWSLD--ADAV 411 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce---eeecC-----------CCCCCceECCC--CCce
Confidence 335688999999999877665 24444555443222111 11111 13677889998 8877
Q ss_pred EEEcCC------------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC-CCCceeE
Q 017773 115 GSGDYD------------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC-DGGKCVS 181 (366)
Q Consensus 115 ~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~-~~~~~~~ 181 (366)
++.... +.+.+.+++.+.... ...+ .|..+.|+|||..+++.. +|.|++=-+.. ..+. ..
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~ 484 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA 484 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee
Confidence 766432 233333443333222 1122 799999999999985554 47777732221 1333 11
Q ss_pred e-----ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEE--ecCCCCCCeeEeec--ccCcEEEEEEcCCCEEEEEeC
Q 017773 182 T-----VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAY--DVRKMVDPVLVFDG--HRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 182 ~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~ 252 (366)
. +. ..-...+..+.|.+++ .++ ++..++...+| ++... ....+.. ...++..++-+. ..++....
T Consensus 485 l~~~~~l~-~~l~~~~~~l~W~~~~-~L~-V~~~~~~~~v~~v~vDG~--~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~ 558 (591)
T PRK13616 485 LTNPREVG-PGLGDTAVSLDWRTGD-SLV-VGRSDPEHPVWYVNLDGS--NSDALPSRNLSAPVVAVAASP-STVYVTDA 558 (591)
T ss_pred ecccEEee-cccCCccccceEecCC-EEE-EEecCCCCceEEEecCCc--cccccCCCCccCceEEEecCC-ceEEEEcC
Confidence 1 11 1222246889999987 444 55444443444 44432 2222222 245566665543 34555555
Q ss_pred CCcEE
Q 017773 253 DGCLK 257 (366)
Q Consensus 253 d~~i~ 257 (366)
++.+.
T Consensus 559 ~g~~~ 563 (591)
T PRK13616 559 RAVLQ 563 (591)
T ss_pred CceEE
Confidence 66433
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.44 E-value=0.00039 Score=37.41 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=31.2
Q ss_pred ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 265 RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
+++..+..|...+..+.+. +++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 4566677787777777776 8889999999999999996
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00095 Score=62.55 Aligned_cols=97 Identities=26% Similarity=0.393 Sum_probs=73.1
Q ss_pred EEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEE
Q 017773 158 GASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVT 237 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 237 (366)
++.|+..|.+...|+. +..-.........++|++++|+.+| .+++.|-.+|.|.+||+... ++.+.+..|..+.+
T Consensus 102 ivi~Ts~ghvl~~d~~---~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMT---GNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred EEEEcCchhhhhhhhh---cccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 4888999999999988 2211122223445699999999998 89999999999999999987 68888887777776
Q ss_pred EEEEc----CCCEEEEEeCCCcEEEEec
Q 017773 238 YIRFL----DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 238 ~~~~~----~~~~l~~~~~d~~i~iwd~ 261 (366)
.+-+. ++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 66553 4556788877775 5543
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.054 Score=43.91 Aligned_cols=170 Identities=8% Similarity=0.125 Sum_probs=105.3
Q ss_pred CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 38 NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 38 ~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
..+-...+.++.|+|+.+.|.+......-.++=...++.... .++.+.. ....+.|..+ +++.++-
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-iPL~g~~-----------DpE~Ieyig~--n~fvi~d 146 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-IPLTGFS-----------DPETIEYIGG--NQFVIVD 146 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-ecccccC-----------ChhHeEEecC--CEEEEEe
Confidence 344556699999999998887777666666665455554432 2222222 2456778776 7777777
Q ss_pred cCCCcEEEEeCCCCceeEee---------ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce-eEeecCCC
Q 017773 118 DYDGVVMEYDLEKKVPIFER---------DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC-VSTVQPSA 187 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~---------~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~ 187 (366)
-.++.+.++.++.+..+... ..+.......++|.|.+..+ +.+-.-.-+.||......... ........
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l-~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRL-FVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceE-EEEEccCCcEEEEEecCCcccccccccCcc
Confidence 78888888877655222111 11212367899999999888 555566667777665111111 11111000
Q ss_pred -----CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCC
Q 017773 188 -----SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKM 222 (366)
Q Consensus 188 -----~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 222 (366)
.-..+.++.|++..+.+++-+.+++.+.-.|....
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 01257788888876678888888888888887654
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.13 Score=47.53 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=79.0
Q ss_pred ceeEEEEecCCCCcEEEEEc------CCC--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGD------YDG--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQM 169 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~ 169 (366)
.+.+.+.+|+ |+.++... .|+ .|.+++.. +.. ..+... . ....-.|+|+|+.+ ++.... ..+++
T Consensus 351 ~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~-~~t~PsWspDG~~l-w~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-H-SLTRPSWSLDADAV-WVVVDGNTVVRV 423 (591)
T ss_pred CcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-C-CCCCceECCCCCce-EEEecCcceEEE
Confidence 5788999999 87776554 243 45555542 222 222222 2 47788999998877 443322 22222
Q ss_pred e-----------eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE---EecCCCCCCe---eEe-ec
Q 017773 170 W-----------DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA---YDVRKMVDPV---LVF-DG 231 (366)
Q Consensus 170 ~-----------d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~~~~---~~~-~~ 231 (366)
. ++. .+.... .....|..+.|+|+|. .++... ++.|++ -....+...+ ..+ ..
T Consensus 424 ~~~~~~gql~~~~vd--~ge~~~-----~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 424 IRDPATGQLARTPVD--ASAVAS-----RVPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eccCCCceEEEEecc--Cchhhh-----ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 2 332 222111 1234799999999995 444433 577777 3333331111 112 22
Q ss_pred ccCcEEEEEEcCCCEEEEEeCCCcEEEEecC
Q 017773 232 HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 232 ~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~ 262 (366)
-...+..+.|.++..|+.+..++.-.+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 2334688999844445566655555555543
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.12 E-value=0.06 Score=44.87 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=77.2
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
+.+..+.-+++ |++++++.......-||.....-...-.... ++|..|.|.|++... +. ...|.|++=+... ..
T Consensus 145 gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~-~riq~~gf~~~~~lw-~~-~~Gg~~~~s~~~~-~~ 218 (302)
T PF14870_consen 145 GSINDITRSSD--GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS-RRIQSMGFSPDGNLW-ML-ARGGQIQFSDDPD-DG 218 (302)
T ss_dssp --EEEEEE-TT--S-EEEEETTSSEEEEE-TT-SS-EEEE--SS-S-EEEEEE-TTS-EE-EE-ETTTEEEEEE-TT-EE
T ss_pred ceeEeEEECCC--CcEEEEECcccEEEEecCCCccceEEccCcc-ceehhceecCCCCEE-EE-eCCcEEEEccCCC-Cc
Confidence 56778888888 9999988866666677765433222222333 499999999997665 33 3788888877220 11
Q ss_pred ceeEe--ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEcCCCEEEEEeC
Q 017773 178 KCVST--VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
+.-.. .........+..++|.+++ .+.++| ..|.+ +...+.+ +.-+..+ .-...++.+.|.+.+.-+.-+.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~g-g~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVG-GSGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS--EEEEE-STT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred cccccccCCcccCceeeEEEEecCCC-CEEEEe-CCccE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 11111 1111222358999999986 666666 44543 3344444 3333332 2245688899984455556667
Q ss_pred CCcEEEE
Q 017773 253 DGCLKLW 259 (366)
Q Consensus 253 d~~i~iw 259 (366)
+|.|--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877554
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.10 E-value=0.0021 Score=36.56 Aligned_cols=31 Identities=13% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEce
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIK 72 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~ 72 (366)
...|.+++|+|...+||.|..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999999999999999999983
No 396
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.07 E-value=0.16 Score=43.43 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=96.1
Q ss_pred EEEecCCCCcEE-EEEcCC--CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 103 LKWKPGTSGRVL-GSGDYD--GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 103 ~~~~~~~~~~~l-~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
=+|.++ |+.| +.+..| ..+.+.|+++++..+...+... ......++++++.+++ ......|+-.|++ +.+.
T Consensus 41 ~~ft~d--G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~--T~e~ 114 (386)
T PF14583_consen 41 NCFTDD--GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYY-VKNGRSLRRVDLD--TLEE 114 (386)
T ss_dssp --B-TT--S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEE-EETTTEEEEEETT--T--E
T ss_pred CCcCCC--CCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEE-EECCCeEEEEECC--cCcE
Confidence 356777 7554 444444 4677778888876665544332 3445677788887744 3345678888998 5554
Q ss_pred eEeecCCCCCCCeEEEEE--cCCCCcEEEEEec----------------------CCeEEEEecCCCCCCeeEeecccCc
Q 017773 180 VSTVQPSASRSAVCCVEF--HPFGSSLVAAGCA----------------------DKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
...+..+.. .+-...| +.++ ..++..-. ...|.-.|++++ + ...+..-...
T Consensus 115 ~~vy~~p~~--~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~-~~~v~~~~~w 189 (386)
T PF14583_consen 115 RVVYEVPDD--WKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-E-RKVVFEDTDW 189 (386)
T ss_dssp EEEEE--TT--EEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-
T ss_pred EEEEECCcc--cccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-c-eeEEEecCcc
Confidence 444443332 4433445 3344 33322211 123455566654 2 3333334566
Q ss_pred EEEEEEc--CCCEEEEEeCC---C-cEEEEecCC-CceeeeeecccceeeeEEEEEecCCCeEEE-----ecCCCeEEEE
Q 017773 236 VTYIRFL--DVDTLVTAGTD---G-CLKLWNVND-SRVIRTYKGHVNNRNFVGLSVWRHGGLLGC-----GSETNQVFVY 303 (366)
Q Consensus 236 v~~~~~~--~~~~l~~~~~d---~-~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iw 303 (366)
+..+.|+ +...+.-|-.. . .-|||-+++ +.....+..+.....+--=-|.|||..|.- ++.+..|.-+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 7788887 44555554421 1 135665543 233333332322211221124588886653 2335567777
Q ss_pred EeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC
Q 017773 304 DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD 350 (366)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 350 (366)
|+.+++....... .+-..+--++ ||++++-=|.|
T Consensus 270 d~~t~~~~~~~~~----------p~~~H~~ss~---Dg~L~vGDG~d 303 (386)
T PF14583_consen 270 DPDTGERRRLMEM----------PWCSHFMSSP---DGKLFVGDGGD 303 (386)
T ss_dssp -TTT--EEEEEEE-----------SEEEEEE-T---TSSEEEEEE--
T ss_pred CCCCCCceEEEeC----------CceeeeEEcC---CCCEEEecCCC
Confidence 7777765433321 1223444445 77777654443
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.06 E-value=0.0023 Score=36.42 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred CceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 326 RGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 326 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
...|..++|+| ...+||.+..||.|.++.+..+++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEECCCcCc
Confidence 45699999999 666999999999999999976655
No 398
>PHA03098 kelch-like protein; Provisional
Probab=97.01 E-value=0.14 Score=47.26 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=88.1
Q ss_pred CceEEEecCCC------cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCC
Q 017773 155 PVLGASGSDDG------TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMV 223 (366)
Q Consensus 155 ~~l~~~~~~dg------~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~ 223 (366)
+.+++.|+.++ .+..||.. +.+....-...........+.+ ++ .+++.|+.+ ..+..||..+.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~- 368 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTK--TKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGES- 368 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCC--CCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCC-
Confidence 34546666542 47788877 3333222111111112222222 34 677888765 34778887764
Q ss_pred CCeeEeecccCc--EEEEEEcCCCEEEEEeCC------CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEE
Q 017773 224 DPVLVFDGHRKT--VTYIRFLDVDTLVTAGTD------GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 224 ~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
..........+ -.+++..++.+++.||.+ ..+..||..+.+- +..+...... ..+.. .++.+.+.
T Consensus 369 -~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~ 443 (534)
T PHA03098 369 -KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIY--HDGKIYVI 443 (534)
T ss_pred -ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEE--ECCEEEEE
Confidence 22221111111 112222367777777732 3578889876532 2222111111 11222 46677777
Q ss_pred ecCCC--------eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC-----CcEEEEEecc
Q 017773 294 GSETN--------QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD-----GLLHVFVGKK 360 (366)
Q Consensus 294 ~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~ 360 (366)
|+.++ .+.+||..+++-...-..+ . . ......+.+ +++.++.||.+ +.+.+||.++
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~-~--r~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLN---F-P--RINASLCIF-----NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCC---c-c--cccceEEEE-----CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 76432 3788887765433211110 0 0 111112222 55677777764 4688888765
Q ss_pred c
Q 017773 361 K 361 (366)
Q Consensus 361 ~ 361 (366)
+
T Consensus 513 ~ 513 (534)
T PHA03098 513 N 513 (534)
T ss_pred C
Confidence 3
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.97 E-value=0.055 Score=48.13 Aligned_cols=129 Identities=9% Similarity=0.145 Sum_probs=76.2
Q ss_pred ccCCCceEEEEECCCC-----CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcE
Q 017773 39 AAVSDSIGVIEFDPSD-----SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRV 113 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~-----~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 113 (366)
++.-+.|..+.|.|-+ .+||+ .....|.+|.+...................+.+. ---..+.|+|. ...
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p---vLpQGCVWHPk--~~i 126 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP---VLPQGCVWHPK--KAI 126 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcc---cCCCcccccCC--Cce
Confidence 3456789999999953 35555 4567899999863222111001110000000011 01235789998 777
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
|+.-.....-.+.++..............+.|.|.+|.+||++|+++.+..=.-++||-.
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 776665554455666543322222223333899999999999997776666667899865
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.83 E-value=0.25 Score=45.54 Aligned_cols=186 Identities=14% Similarity=0.040 Sum_probs=88.2
Q ss_pred CcEEEEEcCCC------cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCCCce
Q 017773 111 GRVLGSGDYDG------VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDGGKC 179 (366)
Q Consensus 111 ~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~~~~ 179 (366)
+..++.|+.++ .+..||+.+.+....-.....+.-.+++.. +..+++.|+.+ ..+..||..++.-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 56666666542 577888877654322111111111122222 34455777765 347778887322222
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecC------CeEEEEecCCCCCCeeEeecccC--cEEEEEEcCCCEEEEEe
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD------KKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDVDTLVTAG 251 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~ 251 (366)
...+.. .... .+++.. ++ .+++.|+.+ ..+..||+.+. .......... .-.+++..++..++.|+
T Consensus 373 ~~~lp~--~r~~-~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 445 (534)
T PHA03098 373 EPPLIF--PRYN-PCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDGKIYVIGG 445 (534)
T ss_pred CCCcCc--CCcc-ceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECCEEEEECC
Confidence 222211 1111 122222 33 677777632 45888998764 1111111111 11122233666777776
Q ss_pred CCC--------cEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCc
Q 017773 252 TDG--------CLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGE 309 (366)
Q Consensus 252 ~d~--------~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 309 (366)
.++ .+.+||..+.+- +..+...... ..... .++++++.|+.+ +.+.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN--ASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCccccc--ceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 432 378889876532 2222111111 11122 367777777754 467788877554
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.80 E-value=0.51 Score=45.07 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=111.0
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC------CeEEEEEcCC---------------CCcEEEEEecCC
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS------AVCCVEFHPF---------------GSSLVAAGCADK 212 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~---------------~~~~l~~~~~d~ 212 (366)
+..+ +.++.++.|.-.|.. +++.+..+....... ....+++... ....++.++.|+
T Consensus 194 gg~l-Yv~t~~~~V~ALDa~--TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTL-YLCTPHNKVIALDAA--TGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEE-EEECCCCeEEEEECC--CCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 4445 666777888888887 777777765432211 1122333211 124777888999
Q ss_pred eEEEEecCCCCCCeeEeecccCcE----------------EEEEEcCCCEEEEEeC----------CCcEEEEecCCCce
Q 017773 213 KAYAYDVRKMVDPVLVFDGHRKTV----------------TYIRFLDVDTLVTAGT----------DGCLKLWNVNDSRV 266 (366)
Q Consensus 213 ~i~i~d~~~~~~~~~~~~~~~~~v----------------~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~ 266 (366)
.+.-.|.+++ +.+..+.. .+.+ ++--.-.+..++.++. +|.|+-+|.++++.
T Consensus 271 ~LiALDA~TG-k~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 271 RLIALDADTG-KLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred eEEEEECCCC-CEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999988 45544321 1111 1100112345666642 68899999999988
Q ss_pred eeeeecc---------cceee-------eEEEEEecCCCeEEEec------------------CCCeEEEEEeecCceEE
Q 017773 267 IRTYKGH---------VNNRN-------FVGLSVWRHGGLLGCGS------------------ETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 267 ~~~~~~~---------~~~~~-------~~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~ 312 (366)
+-.+..- .+... -..++++++..+++.+. ..+.|.-.|.++|+..+
T Consensus 349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 8776421 00000 01223334444443321 13567778889999998
Q ss_pred EEecccccccCC--CCce-eeEEEeeccCCCc---eEEEEeCCCCcEEEEEecccC
Q 017773 313 VHDFEPVTAAGS--ERGF-VSSVCWRRVGEDE---CTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 313 ~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~~---~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.++..+.-...- -..+ +..+.. . +| ..++.++.+|.+++.|.++++
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~-~---~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPD-A---DGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EecccCCccccccccCCceEEeeec-C---CCcEeeEEEEECCCCEEEEEECCCCC
Confidence 876533111100 0011 112221 1 33 378899999999999988754
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=96.69 E-value=0.47 Score=43.04 Aligned_cols=183 Identities=11% Similarity=-0.026 Sum_probs=89.2
Q ss_pred CCceEEEecCCC-----cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC--CeEEEEecCCCCCCe
Q 017773 154 DPVLGASGSDDG-----TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD--KKAYAYDVRKMVDPV 226 (366)
Q Consensus 154 ~~~l~~~~~~dg-----~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~ 226 (366)
+..+++.|+.++ .+..||.. .......-...........+. -++ .+.+.|+.+ ..+..||..+. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~--~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n--~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYI--SNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDA--AW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECC--CCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCC--eE
Confidence 345557776543 46678877 333322222111111222222 234 777888754 35778887653 22
Q ss_pred eEeecccCcEE--EEEEcCCCEEEEEeCCC---cEEEEecCCCcee--eeeecccceeeeEEEEEecCCCeEEEecCCCe
Q 017773 227 LVFDGHRKTVT--YIRFLDVDTLVTAGTDG---CLKLWNVNDSRVI--RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ 299 (366)
Q Consensus 227 ~~~~~~~~~v~--~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 299 (366)
.....-..+.. +++..++...+.||.++ .+..||.++.+-. ..+...... ..+.. -++++.+.|+ .
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~--~~~~IYv~GG---~ 416 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALV--FGRRLFLVGR---N 416 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEE--ECCEEEEECC---c
Confidence 22221111111 22223778888888654 4677887665322 111111111 11222 4667777774 4
Q ss_pred EEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC-----CcEEEEEeccc
Q 017773 300 VFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD-----GLLHVFVGKKK 361 (366)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 361 (366)
+.+||.++++-... ++. .........+.. +++..+.||.+ ..+..||.++.
T Consensus 417 ~e~ydp~~~~W~~~---~~m---~~~r~~~~~~v~-----~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLI---DDP---IYPRDNPELIIV-----DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEc---CCC---CCCccccEEEEE-----CCEEEEECCcCCCcccceEEEEECCCC
Confidence 67888876543321 111 111111222222 67788888865 35778887654
No 403
>PHA02790 Kelch-like protein; Provisional
Probab=96.64 E-value=0.41 Score=43.41 Aligned_cols=182 Identities=10% Similarity=-0.052 Sum_probs=85.3
Q ss_pred CcEEEEEcCCC-----cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--CcEEEeeCCCCCCceeEee
Q 017773 111 GRVLGSGDYDG-----VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--GTMQMWDPRCDGGKCVSTV 183 (366)
Q Consensus 111 ~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--g~v~~~d~~~~~~~~~~~~ 183 (366)
+.+++.|+.++ .+..||..+++....-.....+.-.+++. - +..+.+.|+.+ ..+..||.. ..+....-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~--~n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHG--DAAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECC--CCeEEECC
Confidence 55667776543 46678887765333222121111112222 2 34454777753 357788876 33322221
Q ss_pred cCCCCCCCeEEEEEcCCCCcEEEEEecCC---eEEEEecCCCCCCeeEeecccCc--EEEEEEcCCCEEEEEeCCCcEEE
Q 017773 184 QPSASRSAVCCVEFHPFGSSLVAAGCADK---KAYAYDVRKMVDPVLVFDGHRKT--VTYIRFLDVDTLVTAGTDGCLKL 258 (366)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d~~i~i 258 (366)
...........+.. +| .+.+.|+.++ .+..||.++. .-.....-..+ -.+++..++...+.|+ .+.+
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEF 419 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEE
Confidence 21111112222222 34 7778877553 4678887764 11211111111 1122222666666664 4678
Q ss_pred EecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecC
Q 017773 259 WNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWG 308 (366)
Q Consensus 259 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 308 (366)
||.++.+ .+..+....... .++ . -++++.+.||.+ ..+..||..++
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-I--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-E--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8887653 222222211111 122 2 467888888764 24555655543
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.62 E-value=0.21 Score=45.90 Aligned_cols=105 Identities=9% Similarity=0.117 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEec--cCCCceEEEecCCCcEEEeeCC-------CCCCceeE
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYS--KGDPVLGASGSDDGTMQMWDPR-------CDGGKCVS 181 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~~dg~v~~~d~~-------~~~~~~~~ 181 (366)
++..++-+....+.|||...+....+-.......|.++.|. |+++.+ ++.+..+.|.++--. .+...+++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsi-LaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSI-LAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEE-EEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 55555555567899999998875554443333489999986 567777 455567788887542 12234455
Q ss_pred eecCCCCC-CCeEEEEEcCCCCcEEEEEecCCeEEEEec
Q 017773 182 TVQPSASR-SAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 182 ~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 219 (366)
.+....+. .+|.+..|.++| .+ ++| ..+.+.++|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G-~L-vV~-sGNqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDG-TL-VVG-SGNQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCC-eE-EEE-eCCEEEEECC
Confidence 55443332 489999999998 34 443 3467888874
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.61 E-value=0.12 Score=47.35 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEee-----c----CceEE
Q 017773 243 DVDTLVTAGTDGCLKLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR-----W----GEPVW 312 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~----~~~~~ 312 (366)
-++.-++-+....+.|||.+.+....+-. ...+.|..+.|...|+++.+.+.|..+.|.+|.-. + ..++.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 34444444445579999999886544332 34667889999999999999999999999998541 2 12333
Q ss_pred EEecccccccCCCC-ceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 313 VHDFEPVTAAGSER-GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 313 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
.+.+ ..|+ .+|.+..|.+ +|..++.+| +.+.|++-
T Consensus 120 ~i~i------~~~T~h~Igds~Wl~---~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 120 KIDI------SSHTPHPIGDSIWLK---DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEe------ecCCCCCccceeEec---CCeEEEEeC--CEEEEECC
Confidence 3332 2233 5789999998 876666554 45777764
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.52 E-value=0.28 Score=38.50 Aligned_cols=134 Identities=8% Similarity=0.039 Sum_probs=83.0
Q ss_pred ceeeEEeccCCCceEEEecC--------CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEE
Q 017773 144 RVWSVDYSKGDPVLGASGSD--------DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~--------dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 215 (366)
+...-..+|+|+++.-+-+. .|.++.|-.. .+...... .-.--+.++|+.+...+.++-+.+-.|.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~---~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWN---CVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC---CCceeeeh---hccCCccccccccCcEEEEEccCceEEe
Confidence 56677788999875222221 1344444433 22222211 1124467899988766667777788887
Q ss_pred EEe--cCCCC----CCeeEeec----ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEE
Q 017773 216 AYD--VRKMV----DPVLVFDG----HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 216 i~d--~~~~~----~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
-|| ..++. +.+..++. ..-.--.++.. +|++++++-..++|...|..+++.+.++.-....+++++|-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 777 43331 11222211 01112345556 88899999999999999999999999999888888888775
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.50 E-value=0.49 Score=41.11 Aligned_cols=126 Identities=12% Similarity=0.080 Sum_probs=66.5
Q ss_pred eeEEEEecCCCCcEEEEEc--------------------CCCcEEEEeCCCCceeEeeecCCCC-ceeeEEeccC--CCc
Q 017773 100 LSSLKWKPGTSGRVLGSGD--------------------YDGVVMEYDLEKKVPIFERDEHGGR-RVWSVDYSKG--DPV 156 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~--------------------~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~i~~~~~--~~~ 156 (366)
-+.+.|.|. .+.++|.. ...++.+||+.+.+.++++...... ....+.|..+ ..+
T Consensus 183 gYDfw~qpr--~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~ 260 (461)
T PF05694_consen 183 GYDFWYQPR--HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY 260 (461)
T ss_dssp ---EEEETT--TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred CCCeEEcCC--CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence 567778887 77777753 2467999999999999998776542 3556776543 444
Q ss_pred eEEEecCCCcEEEeeCCCCCCc--eeEeecCCC-----------------CCCCeEEEEEcCCCCcEEEEEecCCeEEEE
Q 017773 157 LGASGSDDGTMQMWDPRCDGGK--CVSTVQPSA-----------------SRSAVCCVEFHPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 217 (366)
=++.+....+|..|--.. .++ ..+.+.... -..-|+.+..|.|++.+.+++-..|.|+.|
T Consensus 261 gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 261 GFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp EEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred eEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 445555555665554321 221 111111111 024689999999986556666689999999
Q ss_pred ecCCCCCCeeE
Q 017773 218 DVRKMVDPVLV 228 (366)
Q Consensus 218 d~~~~~~~~~~ 228 (366)
|+....++...
T Consensus 340 DISDP~~Pkl~ 350 (461)
T PF05694_consen 340 DISDPFNPKLV 350 (461)
T ss_dssp E-SSTTS-EEE
T ss_pred ecCCCCCCcEE
Confidence 99887555543
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.47 E-value=0.55 Score=41.22 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=83.3
Q ss_pred CcEEEEEcCCCcEEEEeCCCCcee---EeeecCCCCceeeEEecc---C-CCceEEEecCCCcEEEeeCCCCCCc-----
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPI---FERDEHGGRRVWSVDYSK---G-DPVLGASGSDDGTMQMWDPRCDGGK----- 178 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~i~~~~---~-~~~l~~~~~~dg~v~~~d~~~~~~~----- 178 (366)
...+++|+..|.++||++..+... ..+...-+.+|..+..-+ . ....+|. =.-..+.+|.+....+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 579999999999999999654311 112222223888887643 1 2223233 34567788877422222
Q ss_pred --eeEeecCCCCCCCeEEEEEcCC----CCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEc-CCCEEEE
Q 017773 179 --CVSTVQPSASRSAVCCVEFHPF----GSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 179 --~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~ 249 (366)
.+..+..+.-......++.-|- +..++.+=+.||.+.+|+-+.. .....+.. ..+| +.+. ..+.|++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~~llPgP---l~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPDFLLPGP---LCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCCCCCCcC---eEEeecCCEEEE
Confidence 1111111111123344444333 2468888899999999997664 11222222 2333 4555 5678888
Q ss_pred EeCCCcEEEEec
Q 017773 250 AGTDGCLKLWNV 261 (366)
Q Consensus 250 ~~~d~~i~iwd~ 261 (366)
++.+..+..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 888888888875
No 409
>PRK10115 protease 2; Provisional
Probab=96.42 E-value=0.91 Score=43.18 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=121.7
Q ss_pred CceEEEEECCCCCEEEEeecC-----CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 43 DSIGVIEFDPSDSVFATGGIA-----RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
-.+..+.++|||++|+.+... -.|++-|+.++.... ..... .-..++|.++ ++.|+..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~---~~i~~------------~~~~~~w~~D--~~~~~y~ 189 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP---ELLDN------------VEPSFVWAND--SWTFYYV 189 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC---ccccC------------cceEEEEeeC--CCEEEEE
Confidence 447778999999988876432 257777877654221 00000 1145899998 6655544
Q ss_pred cC------CCcEEEEeCCCC--ceeEeeecCCCCcee-eEEeccCCCceEEEecC--CCcEEEeeCCCCCCceeEeecCC
Q 017773 118 DY------DGVVMEYDLEKK--VPIFERDEHGGRRVW-SVDYSKGDPVLGASGSD--DGTMQMWDPRCDGGKCVSTVQPS 186 (366)
Q Consensus 118 ~~------dg~i~iw~~~~~--~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~ 186 (366)
.. ...|..+++.++ +....+..... ... .+..+.+++++++.... ++.+.+++.....+.....+...
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR 268 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC
Confidence 32 246888888887 33333443332 233 33344477776544332 45788888642233332222211
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEec---CCeEEEEecCCCCCCeeEeecc-c-CcEEEEEEcCCCEEEEEeCCCcEEEEec
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCA---DKKAYAYDVRKMVDPVLVFDGH-R-KTVTYIRFLDVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~l~~~~~d~~i~iwd~ 261 (366)
. .....+. +..+ .+++.... ...|...++....+ ...+-.+ . ..+..+.+..+.++++...+|.-+++-+
T Consensus 269 ~--~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 269 K--DHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred C--CCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 1 1222222 2222 33333322 23454455543212 2333344 3 3677777775556667777776555444
Q ss_pred CC-Cceeeeee-cccceeeeEEEEEecCCC-eEEEec---CCCeEEEEEeecCc
Q 017773 262 ND-SRVIRTYK-GHVNNRNFVGLSVWRHGG-LLGCGS---ETNQVFVYDVRWGE 309 (366)
Q Consensus 262 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~---~dg~i~iwd~~~~~ 309 (366)
.. +..+..+. .....+..+..+..+++. ++++.+ .-+.+..+|+.+++
T Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 344 NRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 32 22333433 222122222233223333 443332 24678888887764
No 410
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.42 Score=38.97 Aligned_cols=274 Identities=12% Similarity=0.019 Sum_probs=146.2
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.+.+..+.++. ++...+..+.-++|.|+.+.........+.-. +--.++..+ |++...+..|.
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-----------gyaygv~vs----Gn~aYVadldd 148 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-----------GYAYGVYVS----GNYAYVADLDD 148 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCC-----------ceEEEEEec----CCEEEEeeccC
Confidence 44556666764 46666667777999999987665422221110 122333333 88888888666
Q ss_pred cEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 122 VVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 122 ~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
-+.+.|+.+.. ....+..... .-..++.+ |++- ..+..|+-+.+-|+..+....+..-. .....+.++..+
T Consensus 149 gfLivdvsdpssP~lagrya~~~~-d~~~v~IS--Gn~A-YvA~~d~GL~ivDVSnp~sPvli~~~--n~g~g~~sv~vs 222 (370)
T COG5276 149 GFLIVDVSDPSSPQLAGRYALPGG-DTHDVAIS--GNYA-YVAWRDGGLTIVDVSNPHSPVLIGSY--NTGPGTYSVSVS 222 (370)
T ss_pred cEEEEECCCCCCceeeeeeccCCC-CceeEEEe--cCeE-EEEEeCCCeEEEEccCCCCCeEEEEE--ecCCceEEEEec
Confidence 67788887643 2333333333 44567776 5554 66678999999999844332222211 122278888888
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEee--cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce---eeeeec
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV---IRTYKG 272 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~ 272 (366)
++- .+++. .+.-+.+-|..+...+ ..+. ....++..-.+. .+++......+.-+.+-|+.+... ...+..
T Consensus 223 dnr-~y~vv--y~egvlivd~s~~ssp-~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t 298 (370)
T COG5276 223 DNR-AYLVV--YDEGVLIVDVSGPSSP-TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDT 298 (370)
T ss_pred CCe-eEEEE--cccceEEEecCCCCCc-eEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccC
Confidence 753 34433 3445777787766322 2221 122222221333 567777776676677777765421 112221
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
.......+.. .+.++..+..+ ...+-+....+..... .+-...+.+.+.+- +.+.+.+...++-
T Consensus 299 ~g~~a~gi~a----y~~y~yiadkn-~g~vV~~s~~s~m~~~--------~g~~ti~~s~~v~~---~~q~~y~~d~~~g 362 (370)
T COG5276 299 AGYQAAGIRA----YGNYNYIADKN-TGAVVDASPPSMMDKR--------PGRPTIGQSCDVSV---DTQIIYSTDYNGG 362 (370)
T ss_pred CCccccceEE----ecCeeEeccCC-ceEEEeCCChhhcccc--------cCcceEeeecceEE---EeeEEEEeecCCC
Confidence 1111122222 25555555444 3444444332222111 11122333444444 5568888888999
Q ss_pred EEEEEe
Q 017773 353 LHVFVG 358 (366)
Q Consensus 353 i~iw~~ 358 (366)
+.||+.
T Consensus 363 l~i~~~ 368 (370)
T COG5276 363 LSIIEY 368 (370)
T ss_pred EEEEEe
Confidence 999985
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.37 E-value=0.42 Score=38.74 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=102.5
Q ss_pred ceeEEEEecCCCCcEEEEEcCCC--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDG--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG 176 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~ 176 (366)
-...+.|..+ +.++-+.+.-| .|+.+|+.+++..........---..++.. +..+..-.=.++...+||.. +
T Consensus 46 FTQGL~~~~~--g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~--t 119 (264)
T PF05096_consen 46 FTQGLEFLDD--GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN--T 119 (264)
T ss_dssp EEEEEEEEET--TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT--T
T ss_pred cCccEEecCC--CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc--c
Confidence 3567888666 77877777655 799999999987766655443223345544 34454555678899999998 7
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc-----cCcEEEEEEcCCCEEEEEe
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH-----RKTVTYIRFLDVDTLVTAG 251 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~ 251 (366)
.+.+..+...+ .-..++ .++ ..|+.......++.+|..+. +....+... -..++-+.+.+|...+-.=
T Consensus 120 l~~~~~~~y~~---EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 120 LKKIGTFPYPG---EGWGLT--SDG-KRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYINGKIYANVW 192 (264)
T ss_dssp TEEEEEEE-SS---S--EEE--ECS-SCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEETTEEEEEET
T ss_pred ceEEEEEecCC---cceEEE--cCC-CEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC
Confidence 88888887653 445566 345 45666666788999998876 444444322 1346667777777777777
Q ss_pred CCCcEEEEecCCCceeeeee
Q 017773 252 TDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~ 271 (366)
....|...|..+|+.+..+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEE
Confidence 77788888999998776653
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.36 E-value=0.43 Score=44.46 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=93.9
Q ss_pred CCEEEEeecCCeEEEEEceecccccc---eeeee---cCceece---eeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHP---VVAVV---DHSKVCD---YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~---~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
.+++++|. .+.|.||+.+....... ...+. ....... ....-+..|+-|....-...+.|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 67999999876433211 00000 0000000 000123346666655443468899999999999
Q ss_pred EEeCCC-------C-------------ceeEeeecCCCCceeeEEec--cCCCceEEEecCCCcEEEeeCCCCCCceeEe
Q 017773 125 EYDLEK-------K-------------VPIFERDEHGGRRVWSVDYS--KGDPVLGASGSDDGTMQMWDPRCDGGKCVST 182 (366)
Q Consensus 125 iw~~~~-------~-------------~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~ 182 (366)
+|..++ . ++...+. .+..+++++++ ...+ ++|+++....|.||-......+....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcce-EEEEecCCceEEEEEEeccccccccc
Confidence 997531 0 0112222 23378999998 5444 44888888888888766211111111
Q ss_pred ecCCCCCCCeEEEEEcCCC--C---cEEEEEecCCeEEEEec
Q 017773 183 VQPSASRSAVCCVEFHPFG--S---SLVAAGCADKKAYAYDV 219 (366)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~--~---~~l~~~~~d~~i~i~d~ 219 (366)
....+...|.+++|-++. + ..+++++-.|.+.+|++
T Consensus 205 -~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 -PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111234488999997754 1 27778889999999888
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.31 E-value=0.78 Score=41.28 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=72.2
Q ss_pred CceeEEEEecCC--CCcEEEEEcCCCcEEEEeCCC-----CceeEeeecCC--CCce--eeEEeccCCCceEEEecCCCc
Q 017773 98 AKLSSLKWKPGT--SGRVLGSGDYDGVVMEYDLEK-----KVPIFERDEHG--GRRV--WSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 98 ~~v~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~--~~~v--~~i~~~~~~~~l~~~~~~dg~ 166 (366)
+.|..+.|.|.. +...|++......|.+|.+.- ++.......+- .-+| ..+.|+|....| +.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL-~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAIL-TVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceE-EEEecCce
Confidence 359999999862 122455556678899998862 22222111111 1022 357799987776 44333333
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
-.+++++.++.+....++ ..+.|.|.+|.+||.+++++.+..=.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 455666643444444444 3458999999999976666666666678998643
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.28 E-value=1.1 Score=42.85 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=113.8
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCC-------ceeeEEecc----------------CCCceEEEecCCCcE
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGR-------RVWSVDYSK----------------GDPVLGASGSDDGTM 167 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------~v~~i~~~~----------------~~~~l~~~~~~dg~v 167 (366)
+..|+.++.++.|.-.|..+|+.+-.+...... ....+++.. .+..+ +.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV-~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI-ILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE-EEecCCCeE
Confidence 567777788889999999999887776543310 012233321 12345 778889999
Q ss_pred EEeeCCCCCCceeEeecCCCC----------CCCeEEEEEcC--CCCcEEEEEec----------CCeEEEEecCCCCCC
Q 017773 168 QMWDPRCDGGKCVSTVQPSAS----------RSAVCCVEFHP--FGSSLVAAGCA----------DKKAYAYDVRKMVDP 225 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~--~~~~~l~~~~~----------d~~i~i~d~~~~~~~ 225 (366)
.-.|.+ +++....+...+. ...-..+.-.| .+ ..+++|+. +|.|+-+|.+++ +.
T Consensus 273 iALDA~--TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl 348 (764)
T TIGR03074 273 IALDAD--TGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTG-AL 348 (764)
T ss_pred EEEECC--CCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCC-cE
Confidence 999988 7887766542210 00000111111 02 34555532 688999999988 44
Q ss_pred eeEeecc---------cCc--------E-EEEEEc-CCCEEEEEe------------------CCCcEEEEecCCCceee
Q 017773 226 VLVFDGH---------RKT--------V-TYIRFL-DVDTLVTAG------------------TDGCLKLWNVNDSRVIR 268 (366)
Q Consensus 226 ~~~~~~~---------~~~--------v-~~~~~~-~~~~l~~~~------------------~d~~i~iwd~~~~~~~~ 268 (366)
+-.+..- .+. + ..+++. ....++.+. ..+.|.-.|.++++..-
T Consensus 349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 3333210 000 0 111222 112222211 23457778888898887
Q ss_pred eeeccccee---------eeEEEEEecCCC---eEEEecCCCeEEEEEeecCceEEEEec
Q 017773 269 TYKGHVNNR---------NFVGLSVWRHGG---LLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 269 ~~~~~~~~~---------~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
.++.....+ ..+.+. ..+|+ .++.++.+|.+.++|.++|+++...+.
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 776522111 122232 02553 789999999999999999999987654
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.61 Score=41.14 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=91.9
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC-------ceEEEecCCCcEEEeeCCCCCCceeEeec
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP-------VLGASGSDDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
-++..|.....++-.|++.|+.+.+...+.. | -+.|.|..+ .- +.|-.+..|.-.|.+... ..+....
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqt-lvGlS~~svFrIDPR~~g-NKi~v~e 555 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRIDPRARG-NKIKVVE 555 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccce-EEeecccceEEecccccC-Cceeeee
Confidence 3445566677888889999999999988875 4 577777532 22 345556677777877433 2222222
Q ss_pred C--CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec
Q 017773 185 P--SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV 261 (366)
Q Consensus 185 ~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~ 261 (366)
. ........+..-..+| ++|+++..|-|++||--.. .....+++-...|..+..+ +|+++++.+. ..+-+-|+
T Consensus 556 sKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ehhccccccccccccccCc--eEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 1 1122233444444444 8999999999999996543 3444556667788888888 8888776663 45666666
Q ss_pred C
Q 017773 262 N 262 (366)
Q Consensus 262 ~ 262 (366)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.18 Score=46.34 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=94.1
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC--CCCCCCeEEEEE
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP--SASRSAVCCVEF 197 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~ 197 (366)
.-.|+|++. +|+.+..+...++ ++-.+.|+.+.. | ++...+|++.+|++- ++.+..... ......|..+.+
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~ee-L-I~v~k~g~v~Vy~~~---ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEE-L-ICVQKDGTVHVYGLL---GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCC-CeeeecccCCce-E-EEEeccceEEEeecc---hhhhcccccccccccCceeEEEE
Confidence 456888887 4555555555555 788999997654 4 566789999999997 444444211 222224555555
Q ss_pred cCCCCcEEEEEecCCeEEEEe-cCCCCCCeeEeec-ccCcEEEEEEc--CCCEEEEEeCCCcE----EEEecCCC-ceee
Q 017773 198 HPFGSSLVAAGCADKKAYAYD-VRKMVDPVLVFDG-HRKTVTYIRFL--DVDTLVTAGTDGCL----KLWNVNDS-RVIR 268 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~l~~~~~d~~i----~iwd~~~~-~~~~ 268 (366)
..+| -.+++ .+|.+.+-+ .... ....+.. ........+|. +..+-.+...|-.+ .++-.... ....
T Consensus 136 f~~G-Vavlt--~~g~v~~i~~~~~~--~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 136 FHNG-VAVLT--VSGQVILINGVEEP--KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH 210 (829)
T ss_pred ecCc-eEEEe--cCCcEEEEcCCCcc--hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccc
Confidence 5566 33333 445554433 3221 2222221 11112223343 22111111111000 11111111 1111
Q ss_pred eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 269 TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
.+..... ....++.||+.++|+--..+|.|.+-+.+..+....+..
T Consensus 211 ~~~~~~~--~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 211 ALSWPNS--SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ccCCCCc--eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1211112 234555669999999999999999999887777766653
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.10 E-value=0.61 Score=38.15 Aligned_cols=152 Identities=17% Similarity=0.101 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEe-cCCCce
Q 017773 191 AVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWN-VNDSRV 266 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~~ 266 (366)
.+.+.++++++..+.++.. ....++++.... .......+ ..+..-.|. ++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6889999999954444442 334455554433 23333332 366777888 665555555566666663 233322
Q ss_pred e-eeeecc--cceeeeEEEEEecCCCeEEEec---CCCeEEEEEeecCceE-EEEecccccccCCCCceeeEEEeeccCC
Q 017773 267 I-RTYKGH--VNNRNFVGLSVWRHGGLLGCGS---ETNQVFVYDVRWGEPV-WVHDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 267 ~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
. ..+... ...|..+.++ |||..++... .++.|.+=-+.....- ......+..........+.+++|.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vS--pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~--- 175 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVS--PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD--- 175 (253)
T ss_pred eeEEecccccCCceEEEEEC--CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC---
Confidence 1 112211 1155555555 9999887654 4577887766421111 1111111122223356799999998
Q ss_pred CceEEEEeCCCC
Q 017773 340 DECTLVAGGSDG 351 (366)
Q Consensus 340 ~~~~l~s~~~dg 351 (366)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 776766665443
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.14 Score=49.22 Aligned_cols=142 Identities=12% Similarity=0.048 Sum_probs=86.8
Q ss_pred ceeEEEEecCCCCcEEEE--EcCCCcEEEEeCCCCcee-----EeeecC-----CCCceeeEEeccCCCceEEEecCCCc
Q 017773 99 KLSSLKWKPGTSGRVLGS--GDYDGVVMEYDLEKKVPI-----FERDEH-----GGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~-----~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
++..+...+| +...++ .+.+-.|..||+.+-... .-+..+ ...-..++.|+|.=..-.+.+..|+.
T Consensus 102 pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 4666666666 544433 333447888998653111 111111 11145678898875555577788999
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec----ccCcEEEEEEc
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG----HRKTVTYIRFL 242 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~ 242 (366)
|++..+.. .......+. .....++++|+|.| +.++.|-..|++.-|...-. ....+.. ....|.+++|-
T Consensus 180 l~V~~~~~-~~~~v~s~p---~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 180 LRVKSTKQ-LAQNVTSFP---VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhh-hhhhhcccC---cccceeeEEecccc-ceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEe
Confidence 99988762 122222332 33478999999999 89999999999999876432 1122211 14679999998
Q ss_pred -CCCEEEE
Q 017773 243 -DVDTLVT 249 (366)
Q Consensus 243 -~~~~l~~ 249 (366)
...+++.
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 4444443
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.06 E-value=0.81 Score=39.20 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=112.2
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC-CCcEEEE-EcCC-
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT-SGRVLGS-GDYD- 120 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~-~~~d- 120 (366)
..++|+|.|||+++++ ...|.|++++. .+.......... ............++++|+- ...+|.. .+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~------~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLP------EVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-T------TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccc------cccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 3589999999987775 56999999993 222211111110 0112234568999999941 1233333 3311
Q ss_pred -------CcEEEEeCCCC-------cee-Eeeec--CCCCceeeEEeccCCCceEEEecCCC------------cEEEee
Q 017773 121 -------GVVMEYDLEKK-------VPI-FERDE--HGGRRVWSVDYSKGDPVLGASGSDDG------------TMQMWD 171 (366)
Q Consensus 121 -------g~i~iw~~~~~-------~~~-~~~~~--~~~~~v~~i~~~~~~~~l~~~~~~dg------------~v~~~d 171 (366)
..|.-|....+ +.+ ..+.. .....-..|.|.|++..++.+|+... .|.-.+
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 23444444333 111 11222 11125677999999966644444322 122222
Q ss_pred CCCCCCce-------------eEeecCCCCCCCeEEEEEcCC-CCcEEEEE-ecCCeEEEEecCCC--------------
Q 017773 172 PRCDGGKC-------------VSTVQPSASRSAVCCVEFHPF-GSSLVAAG-CADKKAYAYDVRKM-------------- 222 (366)
Q Consensus 172 ~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~-------------- 222 (366)
.. ++. ...+. .++ .....++|+|. | .++++= +.++.=.|.-++.+
T Consensus 155 ~d---G~~p~dnP~~~~~~~~~~i~A-~Gl-RN~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 155 PD---GSIPADNPFVGDDGADSEIYA-YGL-RNPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp TT---SSB-TTSTTTTSTTSTTTEEE-E---SEEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred cc---CcCCCCCccccCCCceEEEEE-eCC-CccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 11 110 00000 011 13567899998 5 454432 22322222222211
Q ss_pred --------------CCCeeEeecccCcEEEEEEc--------CCCEEEEEeCCCcEEEEecCCCceeeee---e-cccce
Q 017773 223 --------------VDPVLVFDGHRKTVTYIRFL--------DVDTLVTAGTDGCLKLWNVNDSRVIRTY---K-GHVNN 276 (366)
Q Consensus 223 --------------~~~~~~~~~~~~~v~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~-~~~~~ 276 (366)
..+...+..| ..+..+.|. .+.+|++.-..+.|....+.....+... . .....
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r 307 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGR 307 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-
T ss_pred CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCC
Confidence 0123334434 455667664 3446666666678888877654322221 1 22224
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVF 301 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~ 301 (366)
+..+++. |||.+.++-+.+|.|.
T Consensus 308 ~~~v~~~--pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 308 PRDVAQG--PDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE--TTSEEEEEE-TTTTEE
T ss_pred ceEEEEc--CCCeEEEEECCCCeEe
Confidence 4455555 9998888887788764
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.49 Score=36.51 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=103.8
Q ss_pred ceEEEecC--CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc
Q 017773 156 VLGASGSD--DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR 233 (366)
Q Consensus 156 ~l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 233 (366)
+++.+.+. ...|++||+. +++.+........ .+..=-...-|..+..-.-.+|.-..+|.++. +.+..+. .+
T Consensus 57 ~i~esTG~yg~S~ir~~~L~--~gq~~~s~~l~~~--~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-y~ 130 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLT--TGQEIFSEKLAPD--TVFGEGITKLGDYFYQLTWKEGVAFKYDADTL-EELGRFS-YE 130 (262)
T ss_pred EEEEeccccccceeEEEecc--CceEEEEeecCCc--cccccceeeccceEEEEEeccceeEEEChHHh-hhhcccc-cC
Confidence 45455554 3469999999 6776666554311 11111111112234444457888899998886 4444443 23
Q ss_pred CcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccc--ee---eeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 234 KTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN--NR---NFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 234 ~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
+.-..++. +++.|+.+....+++.-|.++.....++..... +| +-+.+ -+|...|-.-.+..|...|..+|
T Consensus 131 GeGWgLt~-d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~---VdG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 131 GEGWGLTS-DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW---VDGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred Ccceeeec-CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee---eccEEEEeeeeecceEEEcCCCC
Confidence 44455554 455566666666788878776654444432211 21 22222 26766666666667777888888
Q ss_pred ceEEEEeccccc----ccCCCCceeeEEEeeccCCCc-eEEEEe
Q 017773 309 EPVWVHDFEPVT----AAGSERGFVSSVCWRRVGEDE-CTLVAG 347 (366)
Q Consensus 309 ~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~-~~l~s~ 347 (366)
+...-++..... ....|....+.+++.| ++ +++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~---~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDP---QQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecC---cCCeEEEec
Confidence 887776654422 2244566789999999 44 566665
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.00 E-value=0.29 Score=46.23 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeec----------Cce---EEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW----------GEP---VWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
.|..+.++ |+|.+|+..|..| |.|-.+.. |+. ...+.+........+...|..+.|+|.+.++.
T Consensus 86 ~v~~i~~n--~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 86 EVHQISLN--PTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eEEEEEEC--CCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34445554 9999999888865 44544431 111 12222333333345667899999999887778
Q ss_pred EEEEeCCCCcEEEEEecc
Q 017773 343 TLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 343 ~l~s~~~dg~i~iw~~~~ 360 (366)
.|+.-..|+.+|+||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 999999999999999964
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.47 Score=41.79 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=94.0
Q ss_pred eccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC------cEEEEEecCCeEEEEecCCCC
Q 017773 150 YSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS------SLVAAGCADKKAYAYDVRKMV 223 (366)
Q Consensus 150 ~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~ 223 (366)
...+...++..|.....++-.|++ .++.+....... .+ -+.|.|... ..-++|-.+..|.-.|.|-..
T Consensus 475 h~~dssli~~dg~~~~kLykmDIE--rGkvveeW~~~d---dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIE--RGKVVEEWDLKD---DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred ecCCcceEEecCCCcccceeeecc--cceeeeEeecCC---cc-eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 334455555566667778888888 888888887543 33 567777531 123456677778888887654
Q ss_pred CCeeEeecccCcEE-----EEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 224 DPVLVFDGHRKTVT-----YIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 224 ~~~~~~~~~~~~v~-----~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
..+.... ....++ +..-....+++.++..|-|++||--..+.-..+++-...|..+..+ .+|+++++.+. .
T Consensus 549 NKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt--a~Gk~ilaTCk-~ 624 (776)
T COG5167 549 NKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT--ANGKHILATCK-N 624 (776)
T ss_pred Cceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee--cCCcEEEEeec-c
Confidence 4333322 122222 2222256799999999999999965444444556666666666666 89998877765 4
Q ss_pred eEEEEEee
Q 017773 299 QVFVYDVR 306 (366)
Q Consensus 299 ~i~iwd~~ 306 (366)
.|.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777764
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.34 Score=41.99 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=92.9
Q ss_pred eeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC
Q 017773 146 WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP 225 (366)
Q Consensus 146 ~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 225 (366)
+.+-|...++.++++ ..|.+.-|-...+.......+.. ...++|.++.|++|. +.+|+--.+++|.+++.......
T Consensus 26 ngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh
Confidence 344455445555333 34556666665322222233322 345599999999997 89999999999999998443111
Q ss_pred ---eeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC-ceeeeeecccceeeeEEEEEecCCCeEE--EecCCCe
Q 017773 226 ---VLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS-RVIRTYKGHVNNRNFVGLSVWRHGGLLG--CGSETNQ 299 (366)
Q Consensus 226 ---~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg~ 299 (366)
....+..+..|....|++..-++.-...| +-+|..... +.++..+.|...|....++ ++.+.+. ++-..+.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc--~et~v~LL~t~~~~n~ 178 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC--PETAVILLSTTVLENV 178 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc--cccceEeeeccccccc
Confidence 12223334568888998666677666555 566655432 4455556677777777777 6666543 3324445
Q ss_pred EEEEEeecC
Q 017773 300 VFVYDVRWG 308 (366)
Q Consensus 300 i~iwd~~~~ 308 (366)
+.=+.++++
T Consensus 179 lnpf~~~~~ 187 (657)
T KOG2377|consen 179 LNPFHFRAG 187 (657)
T ss_pred cccEEEeec
Confidence 555555544
No 424
>PRK10115 protease 2; Provisional
Probab=95.76 E-value=1.9 Score=41.06 Aligned_cols=197 Identities=7% Similarity=-0.071 Sum_probs=97.7
Q ss_pred ceeEEEEecCCCCcEEEEEcC-----CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDY-----DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQ 168 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~ 168 (366)
.+..+.|+|+ +++|+.+.. ...|++.|+.++..+....... . ..++|.++++.++++...+ ..|+
T Consensus 128 ~l~~~~~Spd--g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPD--NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCC--CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 3677889998 888876532 2468888998876433222221 2 4699999998886665432 3677
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeE-EEEEcCCCCcEEEEEe--cCCeEEEEecCCC-CCCeeEeecccCcEEEEEEcCC
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVC-CVEFHPFGSSLVAAGC--ADKKAYAYDVRKM-VDPVLVFDGHRKTVTYIRFLDV 244 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~ 244 (366)
.+++.++..+....+..... ... ....+.++..+++... .++.+.+++.... ..+...+.........+. +.+
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 279 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDD--TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ 279 (686)
T ss_pred EEECCCChhHCeEEEeeCCC--CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC
Confidence 88888331133333432222 222 3333446633443332 2357888885332 122222222222222222 322
Q ss_pred CEEEEEeCC----CcEEEEecCCCceeeeeecccc--eeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 245 DTLVTAGTD----GCLKLWNVNDSRVIRTYKGHVN--NRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 245 ~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
..|..-+.. ..|...++........+..+.. .+..+.+. .+.++++...+|.-+++-+.
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~---~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF---TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE---CCEEEEEEEeCCEEEEEEEc
Confidence 333333322 2344445442222233444422 34444443 34566666667766665554
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.70 E-value=0.9 Score=42.47 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=73.0
Q ss_pred cEEEEEEc---CCCEEEEEeCCCcEEEEecCCC--------------------ceeeeeecccceeeeEEEEEecCCCeE
Q 017773 235 TVTYIRFL---DVDTLVTAGTDGCLKLWNVNDS--------------------RVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 235 ~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
.|+.|... +...|+.+..||.|.+|.+++- ++...+... ..++.+++.-....+++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecCcceEE
Confidence 35666554 6678999999999999976321 011122211 12333333211667888
Q ss_pred EEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCC--ce-EEEEeCCCCcEEEEEe
Q 017773 292 GCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGED--EC-TLVAGGSDGLLHVFVG 358 (366)
Q Consensus 292 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~-~l~s~~~dg~i~iw~~ 358 (366)
|+++....|.||-....+....... ...|..-|.+|+|-+...+ |. .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888887664321111100 0125566999999986533 32 7888999999999887
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.68 E-value=0.091 Score=28.97 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCC--cEEEEEecCCeEEEEecCCC
Q 017773 191 AVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKM 222 (366)
Q Consensus 191 ~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~ 222 (366)
.+.++.|+|... .+|+..-..+.|.++|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 688999998664 68888888999999999953
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=95.57 E-value=1.3 Score=37.94 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=83.4
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..+.++.+.|+ +.+++++. .|.+..-.-..++.-..........++++.+.++++.+ +++ ..|.+++=... .+
T Consensus 173 g~~~~i~~~~~--g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~-~vg-~~G~~~~~s~d--~G 245 (334)
T PRK13684 173 GVVRNLRRSPD--GKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLW-MLA-RGGQIRFNDPD--DL 245 (334)
T ss_pred ceEEEEEECCC--CeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEE-EEe-cCCEEEEccCC--CC
Confidence 45788888887 76666655 55444321122232233333444489999999987765 544 45766532222 33
Q ss_pred ceeEeecCC--CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEcCCCEEEEEeC
Q 017773 178 KCVSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~ 252 (366)
..-.....+ .....+..+.+.|++ .++++| .+|.+.. ....+ +...... .-....+.+.+.+++..+..+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G-~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPG-EIWAGG-GNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCC-CEEEEc-CCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 322222211 122357889999976 555554 6776653 33333 2322222 1223577777774455566677
Q ss_pred CCcEEEEe
Q 017773 253 DGCLKLWN 260 (366)
Q Consensus 253 d~~i~iwd 260 (366)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88887775
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.52 E-value=1.4 Score=37.79 Aligned_cols=240 Identities=16% Similarity=0.167 Sum_probs=116.3
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEee---ecCCCCceeeEEeccC---CCceEEEecCC-------
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFER---DEHGGRRVWSVDYSKG---DPVLGASGSDD------- 164 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~---~~~~~~~v~~i~~~~~---~~~l~~~~~~d------- 164 (366)
.++|+|.|+ |+++++- ..|.|++++..... .+..+ ..........++++|+ +.++.++.+..
T Consensus 4 P~~~a~~pd--G~l~v~e-~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD--GRLLVAE-RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT--SCEEEEE-TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC--CcEEEEe-CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 578999999 8877764 49999999933222 22222 1223347899999994 34443433321
Q ss_pred -CcEEEeeCCCCC-----Ccee-EeecC---CCCCCCeEEEEEcCCCCcEEEEEecC-------------CeEEEEecCC
Q 017773 165 -GTMQMWDPRCDG-----GKCV-STVQP---SASRSAVCCVEFHPFGSSLVAAGCAD-------------KKAYAYDVRK 221 (366)
Q Consensus 165 -g~v~~~d~~~~~-----~~~~-~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~ 221 (366)
..|.-|...... .+.+ ..+.. ..| ....|+|.|+| .++++.+.. |.|.-.+...
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence 234444443110 0111 11121 234 67789999999 555554332 3343334322
Q ss_pred CC------------CCeeEeecccCcEEEEEEc-CCCEEEEEe--CCCcEEEEecCCC----------------------
Q 017773 222 MV------------DPVLVFDGHRKTVTYIRFL-DVDTLVTAG--TDGCLKLWNVNDS---------------------- 264 (366)
Q Consensus 222 ~~------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~---------------------- 264 (366)
.. ....--.++.. ...++|. ....|.++- .++.=.|--+..+
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred cCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 10 00011122322 3567887 413333332 2222222222211
Q ss_pred -------ceeeeeecccceeeeEEEEE-----ecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEE
Q 017773 265 -------RVIRTYKGHVNNRNFVGLSV-----WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSV 332 (366)
Q Consensus 265 -------~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 332 (366)
.++..+..|.. +..+.+.. .-.|.++++.-..+.|....++.+..+...+ .........+..+
T Consensus 237 ~~~~~~~~P~~~~~~~~a-p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~r~~~v 311 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSA-PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE----EFLGGFGGRPRDV 311 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE----EECTTSSS-EEEE
T ss_pred cCCCCcCccceeecCccc-cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE----EccccCCCCceEE
Confidence 12233333332 22333320 0156677777777788888887554432221 1113445589999
Q ss_pred EeeccCCCceEEEEeCCCCcEE
Q 017773 333 CWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
++.| ||.++++...+|.|+
T Consensus 312 ~~~p---DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP---DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET---TSEEEEEE-TTTTEE
T ss_pred EEcC---CCeEEEEECCCCeEe
Confidence 9999 998999888888764
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.35 E-value=1.3 Score=36.32 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=82.2
Q ss_pred ceeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee-CCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGD---YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD-PRC 174 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d-~~~ 174 (366)
.+.+.+++++ +..++... ....+.++... ....... ....+..-.|.+++... +....+...+++. ...
T Consensus 25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g~~W-~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDGWVW-TVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCC--CCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCCCCEE-EEEcCCCceEEEEecCC
Confidence 5888999999 87666554 33445555443 3222222 22278888999986655 5555566666663 221
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCC--------CCeeEeecccCcEEEEEEc-C
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMV--------DPVLVFDGHRKTVTYIRFL-D 243 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~-~ 243 (366)
.......+........|..+.++|+|.++.+... .++.|++--+.... .+..........+..+.|. +
T Consensus 98 -g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 98 -GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1222222332222228999999999955544442 35777776543211 1122222334678999999 5
Q ss_pred CCEEEEEeCC
Q 017773 244 VDTLVTAGTD 253 (366)
Q Consensus 244 ~~~l~~~~~d 253 (366)
+.+++.+...
T Consensus 177 ~~L~V~~~~~ 186 (253)
T PF10647_consen 177 STLVVLGRSA 186 (253)
T ss_pred CEEEEEeCCC
Confidence 5555544433
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.33 E-value=0.079 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=26.2
Q ss_pred CceEEEEECCCC---CEEEEeecCCeEEEEEcee
Q 017773 43 DSIGVIEFDPSD---SVFATGGIARKIRIYNIKS 73 (366)
Q Consensus 43 ~~i~~~~~s~~~---~~l~t~~~dg~i~iw~~~~ 73 (366)
++|.++.|+|+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5888888889999999985
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.18 Score=48.51 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=93.6
Q ss_pred CCceEEEEECCCCCEEEEe--ecCCeEEEEEceeccccc--ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 42 SDSIGVIEFDPSDSVFATG--GIARKIRIYNIKSVLVDH--PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.-+|..+..++|+...++. +.+-.|..||+..-.... ....+..+.. ......-..++.|+|.. -...+..
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t----s~ek~vf~~~~~wnP~v-p~n~av~ 174 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT----SFEKPVFQLKNVWNPLV-PLNSAVD 174 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc----hhccccccccccccCCc-cchhhhh
Confidence 4556777777887654443 333378889987643322 0111222211 11112346788999872 2345566
Q ss_pred cCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC--CCCCCeEE
Q 017773 118 DYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS--ASRSAVCC 194 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~~~~~i~~ 194 (366)
..|+.|++..+...... ..+.... .+++++|+|.|..+ +.|-..|++.-|... .+....+... .....|.+
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~--~~Tav~WSprGKQl-~iG~nnGt~vQy~P~---leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTN--SQTAVLWSPRGKQL-FIGRNNGTEVQYEPS---LEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCccc--ceeeEEecccccee-eEecCCCeEEEeecc---cceeecccCCCcCCCcceeE
Confidence 77898988877544322 2223222 78999999999998 999999999988876 4433333322 12468999
Q ss_pred EEEcCCCCcEEEE
Q 017773 195 VEFHPFGSSLVAA 207 (366)
Q Consensus 195 ~~~~~~~~~~l~~ 207 (366)
|.|.... .++++
T Consensus 249 v~Wl~t~-eflvv 260 (1405)
T KOG3630|consen 249 VTWLSTQ-EFLVV 260 (1405)
T ss_pred EEEecce-eEEEE
Confidence 9998764 34433
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.22 E-value=0.003 Score=54.31 Aligned_cols=148 Identities=18% Similarity=0.317 Sum_probs=100.1
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
.....|.|. +.-++.++.+..+..||-... ........ + ....++|..+++.+++.+...+.+.+||+.. +.
T Consensus 37 pi~~~w~~e--~~nlavaca~tiv~~YD~agq-~~le~n~t-g-~aldm~wDkegdvlavlAek~~piylwd~n~---ey 108 (615)
T KOG2247|consen 37 PIIHRWRPE--GHNLAVACANTIVIYYDKAGQ-VILELNPT-G-KALDMAWDKEGDVLAVLAEKTGPIYLWDVNS---EY 108 (615)
T ss_pred cceeeEecC--CCceehhhhhhHHHhhhhhcc-eecccCCc-h-hHhhhhhccccchhhhhhhcCCCeeechhhh---hh
Confidence 344667777 555888888888888886433 33333222 2 6678899988888878888899999999982 22
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEE
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKL 258 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i 258 (366)
...+...+. ..-.-+.|++.+ ..++.|...|.+.+++..+. +.....-.|...++++++.-.++.+.++.|..+.+
T Consensus 109 tqqLE~gg~-~s~sll~wsKg~-~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 109 TQQLESGGT-SSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred HHHHhccCc-chHHHHhhccCC-ccccccccccceEEEeccch-hhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 223332221 122227888876 78888889999999998876 33334444888999999985556666666655443
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.15 E-value=3.1 Score=39.63 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=67.7
Q ss_pred cceeeeeecCCCceeeecCC-C-----------------CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceec----
Q 017773 17 ERARCEWDFNLRTTVSSSSS-P-----------------NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSV---- 74 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~-~-----------------~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---- 74 (366)
+...+.|+.....+....-. . .....-.|..|.+||+|++||..|..| |.|-.+...
T Consensus 41 d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~ 119 (717)
T PF10168_consen 41 DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN 119 (717)
T ss_pred CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc
Confidence 46888999888776433111 0 011345688999999999999998766 444444321
Q ss_pred ------ccccceeeeecCceeceeeeecCCceeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCC
Q 017773 75 ------LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT-SGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
.......+..-.. .-....+...|..+.|+|.. .+..|+.-..|+++++||+...
T Consensus 120 ~~~~~g~~~i~Crt~~v~~--~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 120 GEFEDGKKEINCRTVPVDE--RFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ccccCCCcceeEEEEEech--hhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 0000000000000 00112334679999999972 2477888888999999999754
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.81 E-value=2.6 Score=37.11 Aligned_cols=279 Identities=13% Similarity=0.100 Sum_probs=141.4
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEe---cCCCCcEEEEEcCCCcEEEEeCCC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWK---PGTSGRVLGSGDYDGVVMEYDLEK 130 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~~~~~dg~i~iw~~~~ 130 (366)
...+++|+..|.++||+............+...- ..+|..+..- +..+...||. -.-..+.+|.+..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---------~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~ 106 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---------KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSL 106 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec---------CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEe
Confidence 3589999999999999985544322112222211 2466666653 3222344444 4466788887732
Q ss_pred C--c-------eeEeeecCC-CCceeeEEeccC----CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 131 K--V-------PIFERDEHG-GRRVWSVDYSKG----DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 131 ~--~-------~~~~~~~~~-~~~v~~i~~~~~----~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
. . .+..+..|. .+....+++-|- ++.++..=+.||.+.+|+-+ .......+.. .--...+.
T Consensus 107 ~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe--~~~f~~~lp~---~llPgPl~ 181 (418)
T PF14727_consen 107 VDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE--SFAFSRFLPD---FLLPGPLC 181 (418)
T ss_pred cCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC--cEEEEEEcCC---CCCCcCeE
Confidence 1 1 112222221 123444444432 24566888999999999966 3222333322 22344567
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCC--------------------C--eeEeecccCcEEEEEE---c-CCCEEEEE
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVD--------------------P--VLVFDGHRKTVTYIRF---L-DVDTLVTA 250 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------~--~~~~~~~~~~v~~~~~---~-~~~~l~~~ 250 (366)
|.|.. ..+++++.+..+..|....... . --++. -...+..+.. + ....+++-
T Consensus 182 Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvL 259 (418)
T PF14727_consen 182 YCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVL 259 (418)
T ss_pred EeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEE
Confidence 88876 6788888888888887632100 0 00011 1123333333 2 11223333
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEE--ecCC---CeEEEecCCCeEEEEEeecCceEEEEecccccccCCC
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSV--WRHG---GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 325 (366)
+ ...+.+.+- +|......+-...+.....+.. ..++ ..++.++.++.+.||. ..+..+.-..+
T Consensus 260 g-er~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~-------- 327 (418)
T PF14727_consen 260 G-ERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLP-------- 327 (418)
T ss_pred e-cceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCC--------
Confidence 2 344555553 3443333332222222222221 1122 2478888999999985 34555554322
Q ss_pred CceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 326 RGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 326 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
..+| ++.......-...|++-+.+|.|.+-=+.+.|
T Consensus 328 ~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 1222 33332211123488889999999887665543
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.61 E-value=1.1 Score=31.95 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=66.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCC--------ceeeeeecccceeeeEEEEE---ecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 243 DVDTLVTAGTDGCLKLWNVNDS--------RVIRTYKGHVNNRNFVGLSV---WRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 243 ~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
....|+.++.-|.|.|++.... ..+..+.- ...+++++... ..+...|+.|+. ..|..||+.+...+
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL 86 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh
Confidence 3346777788888999886643 23344433 23455554431 234567777765 57999999987766
Q ss_pred EEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 312 WVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+..++ ...|+++.+-..+....-|+..|.+..|.=||.++.+
T Consensus 87 Fyke~---------~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 87 FYKEV---------PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred hhhhC---------ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 54332 4668888876543222345555557777777766544
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=1.2 Score=38.71 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=82.1
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCC--CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK--KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
-+.+-|... ++.|++.. .|.+.=|-... ......+.....++|.++.|++|.+.+ ++--.+.+|.+++...+..
T Consensus 25 sngvFfDDa--Nkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkil-AVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFDDA--NKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKIL-AVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeeccC--cceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceE-EEEecCceEEEEecCCCch
Confidence 344555543 44444333 34455554432 223333433344499999999998877 8888899999999862222
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
+.....+.......|....|..+. -+|.-.. .-+-+|-.....+.++..+.|+..|+--.|. +...
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSST--EIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCe--eEEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 223333333444578999998763 3444433 3356666555445566666777777766666 4443
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=2 Score=33.37 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=87.7
Q ss_pred CcEEEEEcC--CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC
Q 017773 111 GRVLGSGDY--DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS 188 (366)
Q Consensus 111 ~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~ 188 (366)
|.++.+.+. ...|++||+.+++.+........ .+..=-...-+.++..-.-.+|.-..+|.+ +.+.+..+...+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~gd~~y~LTw~egvaf~~d~~--t~~~lg~~~y~G- 131 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKLGDYFYQLTWKEGVAFKYDAD--TLEELGRFSYEG- 131 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCc-cccccceeeccceEEEEEeccceeEEEChH--HhhhhcccccCC-
Confidence 556665543 45799999999887766544321 222211122244443444567888889988 777777776554
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeec-ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDG-HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
.-..++. ++ .-+..+....+++.-|.++.... ..+..+ .-..++.+.|-+|...+-.-.+..|...|..+|
T Consensus 132 --eGWgLt~--d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 --EGWGLTS--DD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred --cceeeec--CC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCC
Confidence 3344443 44 34555555667777777654211 111221 112345556667777776666667777777777
Q ss_pred ceeeeee
Q 017773 265 RVIRTYK 271 (366)
Q Consensus 265 ~~~~~~~ 271 (366)
+.+..+.
T Consensus 207 rV~~wid 213 (262)
T COG3823 207 RVVAWID 213 (262)
T ss_pred cEEEEEE
Confidence 7665554
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.25 E-value=0.78 Score=40.21 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=60.6
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC-----------------CCce
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG-----------------DPVL 157 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~~l 157 (366)
.....+.+++.+|. +++.++...-|.|.++|+.++..++..++-.+..+.-+..... ...|
T Consensus 305 D~~R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 305 DSKREGESICLSPS--GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred cCCceEEEEEECCC--CCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 44556889999998 9999988888999999999998888777765533332222221 1234
Q ss_pred EEEecCCCcEEEeeCCCCCCceeEeec
Q 017773 158 GASGSDDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
++.+-.-|.|.+|.++ .+..+..+.
T Consensus 383 vIyaprRg~lEvW~~~--~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMR--QGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecC--CCCEEEEEE
Confidence 4566678889999988 666555554
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=2.1 Score=42.43 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=24.0
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
++++..++++..||.+..||...++..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKLQ 269 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCcee
Confidence 378999999999999999999988663
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.06 E-value=3.8 Score=35.79 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=75.0
Q ss_pred CceEEEEECCCCCEEEEee-----------cCC-eEEEEEceeccccc-ceeeeecCceeceeeeecCCceeEEEEecCC
Q 017773 43 DSIGVIEFDPSDSVFATGG-----------IAR-KIRIYNIKSVLVDH-PVVAVVDHSKVCDYYICTPAKLSSLKWKPGT 109 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~-----------~dg-~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (366)
.....|+|.++|+++++-. ..+ .|.+++-.++.-.. ....+... -.....+++.++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----------l~~p~Gi~~~~~- 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----------LSMVTGLAVAVG- 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----------CCCccceeEecC-
Confidence 3467889999998776642 123 67666544322111 11111111 123578999887
Q ss_pred CCcEEEEEcCCCcEEEEeCCCC-----ce--eE-eeecC---CCCceeeEEeccCCCceEEEecCC--------------
Q 017773 110 SGRVLGSGDYDGVVMEYDLEKK-----VP--IF-ERDEH---GGRRVWSVDYSKGDPVLGASGSDD-------------- 164 (366)
Q Consensus 110 ~~~~l~~~~~dg~i~iw~~~~~-----~~--~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~~d-------------- 164 (366)
+ +++ +......++.+.+.. +. +. .+... .......++|.|+|..++..++..
T Consensus 83 -G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 83 -G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred -C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcc
Confidence 7 444 444433334354321 11 11 12221 112577899999988764444211
Q ss_pred ----CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe
Q 017773 165 ----GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC 209 (366)
Q Consensus 165 ----g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 209 (366)
|.|.-++.. .+ ....+. .+ ......++|+|+| .++++-.
T Consensus 160 ~~~~g~i~r~~pd--g~-~~e~~a-~G-~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 160 QGLGGGLFRYNPD--GG-KLRVVA-HG-FQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred cccCceEEEEecC--CC-eEEEEe-cC-cCCCccceECCCC-CEEEEcc
Confidence 334444444 22 233332 12 2356789999988 6666543
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.02 E-value=0.34 Score=38.53 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=49.1
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEE-eccccccc-----CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVH-DFEPVTAA-----GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.++.+|++-+.+|.+++||+.+++.+... .+.+.... ......|..+..+. +|.-|++-+ +|..+.|+.+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~---~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS---NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC---CCCEEEEEe-CCCEEEeccc
Confidence 67889999999999999999988775433 22221111 03456788888887 676677664 5778888764
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.95 E-value=4.1 Score=35.83 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=79.8
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK 178 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~ 178 (366)
...+..+++ +.+++.+.....++-||- +... ..........+..+.+.+++..+ +++ ..|.+..=+- .++
T Consensus 241 f~~v~~~~d--G~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~-l~g-~~G~l~~S~d---~G~ 311 (398)
T PLN00033 241 FSTVNRSPD--GDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLW-LLT-RGGGLYVSKG---TGL 311 (398)
T ss_pred eeeEEEcCC--CCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEE-EEe-CCceEEEecC---CCC
Confidence 344455666 777776664332333332 3221 22223333478999999887765 444 4566544332 232
Q ss_pred -----eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEcCCCEEEEE
Q 017773 179 -----CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 179 -----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~ 250 (366)
.............+.++.+.+++ ..+++| ..|.+.... ..+ +.-.... .-....+.+.|.+.+.....
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G-~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK-EAWAAG-GSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC-cEEEEE-CCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 22333222222368899999876 565555 777666653 232 3323322 23456889998744555666
Q ss_pred eCCCcEEEE
Q 017773 251 GTDGCLKLW 259 (366)
Q Consensus 251 ~~d~~i~iw 259 (366)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 677876554
No 443
>PLN02153 epithiospecifier protein
Probab=93.85 E-value=3.9 Score=35.25 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=67.0
Q ss_pred CcEEEEEcCC-------CcEEEEeCCCCceeEeeecCCCCce--eeEEeccCCCceEEEecCC-----CcEEEeeCCCCC
Q 017773 111 GRVLGSGDYD-------GVVMEYDLEKKVPIFERDEHGGRRV--WSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDG 176 (366)
Q Consensus 111 ~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~ 176 (366)
+.+++.|+.+ ..+.+||+.+.+-............ ...+....+..+++.|+.+ ..+.+||+.+..
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 5566666652 3577888877643321111100010 0111111134455667643 257788887222
Q ss_pred CceeEeecCC--CCCCCeEEEEEcCCCCcEEEEEecC-----------CeEEEEecCCCCCCeeEeecc-----cCcEEE
Q 017773 177 GKCVSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCAD-----------KKAYAYDVRKMVDPVLVFDGH-----RKTVTY 238 (366)
Q Consensus 177 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~-----~~~v~~ 238 (366)
-..+..+... .....-.+++.. ++ ++++.|+.+ ..+.+||+.+. .-..+... ...-.+
T Consensus 113 W~~~~~~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 113 WTFLTKLDEEGGPEARTFHSMASD-EN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred EEEeccCCCCCCCCCceeeEEEEE-CC-EEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcce
Confidence 1222221100 000011222332 33 677777653 24778888764 22222111 011112
Q ss_pred EEEcCCCEEEEEeCC-------------CcEEEEecCCCc
Q 017773 239 IRFLDVDTLVTAGTD-------------GCLKLWNVNDSR 265 (366)
Q Consensus 239 ~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~ 265 (366)
++..++++++.++.+ ..+.+||..+.+
T Consensus 189 ~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 189 FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 222366666665532 358888887653
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=2 Score=38.20 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=17.7
Q ss_pred cEEEEEEc-CCCEEEEEeCCCcEEEEe
Q 017773 235 TVTYIRFL-DVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 235 ~v~~~~~~-~~~~l~~~~~d~~i~iwd 260 (366)
.|..+..+ .|..++-+|.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 35556666 777888888888665543
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.69 E-value=0.0097 Score=51.37 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=90.1
Q ss_pred eEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe
Q 017773 147 SVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV 226 (366)
Q Consensus 147 ~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 226 (366)
...|-+.+..+ +.++.+..+..||-. ++.......+ +....++|..+++..++.+-..+.+++||+.+.....
T Consensus 39 ~~~w~~e~~nl-avaca~tiv~~YD~a---gq~~le~n~t---g~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 39 IHRWRPEGHNL-AVACANTIVIYYDKA---GQVILELNPT---GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred eeeEecCCCce-ehhhhhhHHHhhhhh---cceecccCCc---hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 45677777777 777788889999965 4444444433 3667889998887777778889999999998752222
Q ss_pred eEeec-ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC
Q 017773 227 LVFDG-HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG 289 (366)
Q Consensus 227 ~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
....+ |... -+.|+ ....++.+-..|.+.+++..+.+.+-..-.|...+.+.++. +.+.
T Consensus 112 LE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~--lEd~ 172 (615)
T KOG2247|consen 112 LESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT--LEDY 172 (615)
T ss_pred HhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec--ccce
Confidence 22221 2222 25677 66778888889999999988776665554476666666665 5443
No 446
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=3.6 Score=33.82 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=121.3
Q ss_pred EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEE
Q 017773 46 GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVME 125 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 125 (366)
.++.. .|++...+..|.-+.+.|+.+............. ...-..++.+ |++-..+..|+-+.+
T Consensus 132 ygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~----------~~d~~~v~IS----Gn~AYvA~~d~GL~i 195 (370)
T COG5276 132 YGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP----------GGDTHDVAIS----GNYAYVAWRDGGLTI 195 (370)
T ss_pred EEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC----------CCCceeEEEe----cCeEEEEEeCCCeEE
Confidence 44444 3777877776666778888876554422221111 1223456666 778888888999999
Q ss_pred EeCCCCc-eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcE
Q 017773 126 YDLEKKV-PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSL 204 (366)
Q Consensus 126 w~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (366)
-|+.... ++..-....+..+.++..+++-.++ +.. +.-+.+-|...++...+.-.........++.+..+ + ++
T Consensus 196 vDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~-vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~-~~ 269 (370)
T COG5276 196 VDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYL-VVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--G-EY 269 (370)
T ss_pred EEccCCCCCeEEEEEecCCceEEEEecCCeeEE-EEc--ccceEEEecCCCCCceEeeccccCCcccccceecc--c-ce
Confidence 9987652 2222222222267777777654433 332 34477777773222222222211222233333443 3 56
Q ss_pred EEEEecCCeEEEEecCCCCCCeeE--eecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE
Q 017773 205 VAAGCADKKAYAYDVRKMVDPVLV--FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 205 l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
......+.-+.+-|+.+...+... +......-..+.. .+.++..+..+ ...+-+....+......+....+...+.
T Consensus 270 ~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a-y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v 347 (370)
T COG5276 270 AYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA-YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDV 347 (370)
T ss_pred eeeeccccCceeEeccCCCCCchhccccCCCccccceEE-ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecce
Confidence 666666777777887765333221 1111112233333 33445444444 4445555544333333332222223333
Q ss_pred EEecCCCeEEEecCCCeEEEEEe
Q 017773 283 SVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 283 ~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
+ -+.+.+.+...++.+.+|+.
T Consensus 348 ~--~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 348 S--VDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred E--EEeeEEEEeecCCCEEEEEe
Confidence 3 34557778888888888875
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.39 E-value=2.1 Score=30.65 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=68.6
Q ss_pred EEeccCCCceEEEecCCCcEEEeeCCCC------CCceeEeecCCCCCCCeEEEEEcC----CCCcEEEEEecCCeEEEE
Q 017773 148 VDYSKGDPVLGASGSDDGTMQMWDPRCD------GGKCVSTVQPSASRSAVCCVEFHP----FGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 148 i~~~~~~~~l~~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~i~i~ 217 (366)
-.|....+.| ++++.-|+|.|++.... ....+..+... ..|++++-.| ++...|+.| ....+..|
T Consensus 4 GkfDG~~pcL-~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliG-t~t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCL-ACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIG-TQTSLLAY 78 (136)
T ss_pred EEeCCCceeE-EEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEe-ccceEEEE
Confidence 3455556666 77788899999987632 12233444433 3677776544 233567776 56679999
Q ss_pred ecCCCCCCeeEeecccCcEEEEEEc----CCCEEEEEeCCCcEEEEecCCCceeee
Q 017773 218 DVRKMVDPVLVFDGHRKTVTYIRFL----DVDTLVTAGTDGCLKLWNVNDSRVIRT 269 (366)
Q Consensus 218 d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~ 269 (366)
|+....... ++.-...++++.+- ...-++..+.+..|.-||..-.+...+
T Consensus 79 DV~~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 79 DVENNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EcccCchhh--hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 998863322 22334677888773 223444444567787787654444433
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.39 E-value=0.071 Score=49.83 Aligned_cols=229 Identities=15% Similarity=0.148 Sum_probs=119.3
Q ss_pred CCcEEEEeCCCCce-eEeeecCCCCceeeEEeccCC-CceEEEecCCCcEEEeeCCCCCCceeEeecC---CCCCCCeEE
Q 017773 120 DGVVMEYDLEKKVP-IFERDEHGGRRVWSVDYSKGD-PVLGASGSDDGTMQMWDPRCDGGKCVSTVQP---SASRSAVCC 194 (366)
Q Consensus 120 dg~i~iw~~~~~~~-~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~i~~ 194 (366)
.+.+++-+....-. ...+++..+ .|-.+.|-... +.+ . ..-|.+.+||+..-.++....+.. ......+.-
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G-~v~dl~fah~~~pk~-~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPG-GVGDLQFAHTKCPKG-R--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCC-CcccccccccCChHH-H--HHhhhhheeehHhhccccccceEEeecCcCCCCcce
Confidence 45577766654321 112334444 66677774321 122 1 234678899886323332222211 011224455
Q ss_pred EEEcC---CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEE-----------c-CCCEEEEEeCCCcEEEE
Q 017773 195 VEFHP---FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRF-----------L-DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 195 ~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-----------~-~~~~l~~~~~d~~i~iw 259 (366)
+.|.| +. .++..+-.++.+++...... ....+.+|...+..+++ + ||..|++++.||.+++|
T Consensus 186 V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVNK-VYICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred eeeccccccc-ceeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 66655 33 56667778889998887664 33445557666555443 5 88899999999988877
Q ss_pred ecC-----CCceeeeeecccceeeeEEEEEecC---------CCeEEEecC-CCeEEEEEeecCceEEEEecccccccCC
Q 017773 260 NVN-----DSRVIRTYKGHVNNRNFVGLSVWRH---------GGLLGCGSE-TNQVFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 260 d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
.+. ..+++...+.|..... ++|.++.+ -.+++++++ +..+++|.....+++..+..........
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p 341 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGP 341 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecC
Confidence 653 3356667777763322 22222222 124455544 5568999887766652221111222233
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
|.+.|+.+..... --..+++...|+.|.+|.-
T Consensus 342 ~~~~v~~~~~~~~--~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQW--MTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred CCccccchhhhHH--HHHHHHHhhhHHHHHHhhc
Confidence 4444443221110 0012344566777777753
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.20 E-value=4.3 Score=33.69 Aligned_cols=229 Identities=15% Similarity=0.121 Sum_probs=127.7
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCC------CC-ceeEeeecC----CCCceeeEEeccCCC-----------ce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLE------KK-VPIFERDEH----GGRRVWSVDYSKGDP-----------VL 157 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~~----~~~~v~~i~~~~~~~-----------~l 157 (366)
-..|+++|. +.+-++...-+...+||.+ .. ..+..+... .....+.+.|+.... ..
T Consensus 25 ~WGia~~p~--~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYRPG--GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEecCC--CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 578999998 8787887778899999986 12 223333321 112567777774322 22
Q ss_pred EEEecCCCcEEEeeCCCCCC---ceeEeecCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCCCCeeE---e
Q 017773 158 GASGSDDGTMQMWDPRCDGG---KCVSTVQPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMVDPVLV---F 229 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~ 229 (366)
++.+++||+|.-|....... .....+.......--..+++... +..+.++=...++|.+||-.-. ++.. +
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCc
Confidence 47788999999999652222 11222221111122344555433 4355555567899999986532 1111 1
Q ss_pred e-----cccCcEEEEEEcCCCEEEE-------------EeCCCcEEEEecCCCceeeeeec--ccceeeeEEEEEe----
Q 017773 230 D-----GHRKTVTYIRFLDVDTLVT-------------AGTDGCLKLWNVNDSRVIRTYKG--HVNNRNFVGLSVW---- 285 (366)
Q Consensus 230 ~-----~~~~~v~~~~~~~~~~l~~-------------~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~---- 285 (366)
. ..-.+ ..+.--.++++++ +..-|.|-+||. .++.++++.. .-...+.++.++.
T Consensus 181 ~DP~iPagyAP-FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAP-FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCC-cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCC
Confidence 1 00011 1111112333332 233468999996 5777777742 2233455666521
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
..+.+|+---.||+|..||..+++.+..+.-..-..+ -...++.|+|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi--~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV--KVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE--EecCeEEeeeCC
Confidence 2567787777799999999998887766542210000 123477888865
No 450
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.16 E-value=9.2 Score=37.39 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=96.9
Q ss_pred EEEeeCCCCCCceeEeecCC--CCCCCeEEEEEcCCCCc-EEEEEec-----------CCeEEEEecCCCCCCeeEee--
Q 017773 167 MQMWDPRCDGGKCVSTVQPS--ASRSAVCCVEFHPFGSS-LVAAGCA-----------DKKAYAYDVRKMVDPVLVFD-- 230 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~-~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~-- 230 (366)
|+++|.. +++.+..+... .....+..+.|+..... ++++|.. +|.++.|++-..++.+..+.
T Consensus 855 I~~~d~~--s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 855 IRVFDPK--SGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred EEEEcCC--CCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 6677766 44444444332 22335667777665533 4444432 35577777655444333332
Q ss_pred cccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec-Cc
Q 017773 231 GHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GE 309 (366)
Q Consensus 231 ~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 309 (366)
.-.+++.+++-..+ ++ -++....+++||+...++++..+...-+.....+. ..+..++.|.....+.++..+. ++
T Consensus 933 ~~~~~v~Ai~~f~~-~~-LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQG-RV-LAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ--TYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCCccceEEeccCC-EE-EEecccEEEEeeCChHHHHhhhhhccCceEEEEEe--ecceEEEEeeccceEEEEEEecCCC
Confidence 12344544443333 33 34456789999999887776654333233333333 4577888887766666655543 22
Q ss_pred eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.+..+.-.+ -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1009 ~l~~fadD~------~pR~Vt~~~~l----D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1009 QLIVFADDP------VPRHVTALELL----DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eEEEEeCCC------ccceeeEEEEe----cCCceeeccccCcEEEEECC
Confidence 232332111 23457766665 44577877777777766654
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.01 E-value=5.2 Score=34.17 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=52.4
Q ss_pred cEEEEEecC-----CeEEEEecCCCCCC--eeEeecccCcE--EEEEEcCCCEEEEEeCC-----CcEEEEecCCCc--e
Q 017773 203 SLVAAGCAD-----KKAYAYDVRKMVDP--VLVFDGHRKTV--TYIRFLDVDTLVTAGTD-----GCLKLWNVNDSR--V 266 (366)
Q Consensus 203 ~~l~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~~v--~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~--~ 266 (366)
.+++.|+.+ ..+..||+.+.... ...+..-..+. .+++..++.+++.|+.. ..+..||..+.+ .
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 677777754 35777887664210 11221111111 22233367777777742 357888887653 2
Q ss_pred eeeeecccceeeeEEEEEecCCCeEEEecCCC----eEEEEEeecCc
Q 017773 267 IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN----QVFVYDVRWGE 309 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~ 309 (366)
+..+.... .....+.. .++++.+.|+.++ .+..||..+.+
T Consensus 154 ~~~~p~~~-r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 154 LPDFPGEP-RVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCCCCC-CCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22222111 11112222 4677778887654 24577776554
No 452
>PLN02193 nitrile-specifier protein
Probab=92.80 E-value=7.3 Score=35.35 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred cEEEEEecC-----CeEEEEecCCCCCCeeEeecc-----cCcEEEEEEcCCCEEEEEeCCC-----cEEEEecCCCcee
Q 017773 203 SLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGH-----RKTVTYIRFLDVDTLVTAGTDG-----CLKLWNVNDSRVI 267 (366)
Q Consensus 203 ~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~ 267 (366)
.+++.|+.+ ..+..||+.+. ....+... ...-.+++..++++++.|+.++ .+..||+.+.+-.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 677777654 35888898764 22222111 1111222223667777777553 3667887665321
Q ss_pred eeeec---c-cceeeeEEEEEecCCCeEEEecCC----CeEEEEEeecCce
Q 017773 268 RTYKG---H-VNNRNFVGLSVWRHGGLLGCGSET----NQVFVYDVRWGEP 310 (366)
Q Consensus 268 ~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 310 (366)
. +.. . .......... -++++++.++.+ ..+.+||+.+.+-
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 1 110 0 0000111112 357777777655 4588888876654
No 453
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.80 E-value=6.3 Score=34.55 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=13.8
Q ss_pred CceEEEEeCCCC------cEEEEEeccc
Q 017773 340 DECTLVAGGSDG------LLHVFVGKKK 361 (366)
Q Consensus 340 ~~~~l~s~~~dg------~i~iw~~~~~ 361 (366)
++++++.||... .|..++.+.+
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 667888887542 4666665543
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.74 E-value=5 Score=33.30 Aligned_cols=218 Identities=9% Similarity=0.023 Sum_probs=118.3
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccc----cceeeeecCceeceeeeecCCceeEEEEecCC----------C
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVD----HPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT----------S 110 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~ 110 (366)
-.-|+++|.+.+-++....+...+||....... ........... ...++..+.+.|+... .
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 467999999987777777789999998722111 10111110000 0012356777777430 0
Q ss_pred CcEEEEEcCCCcEEEEeCCCCce-----eEeeecC-CCCceeeEEecc--CCCceEEEecCCCcEEEeeCCCCCCceeEe
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVP-----IFERDEH-GGRRVWSVDYSK--GDPVLGASGSDDGTMQMWDPRCDGGKCVST 182 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~-~~~~v~~i~~~~--~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~ 182 (366)
...++.+++||+|.-|...-+.. ...+... ....-..+++-. .+.+|.++--..++|.+||-. ...+..
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~---f~~~~~ 176 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS---FRPPPL 176 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc---cccccC
Confidence 12367788999999998643322 1222222 221233455543 356665666678999999865 222211
Q ss_pred ---ecC---CCCCC--CeE---------EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEE--
Q 017773 183 ---VQP---SASRS--AVC---------CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRF-- 241 (366)
Q Consensus 183 ---~~~---~~~~~--~i~---------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~-- 241 (366)
+.- +..-. .|. -..-.++. .-=+.|..-|.|-+||+.. +.++++.. .-..-..|+.
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeCh
Confidence 110 00000 111 11111211 1122233447899999876 46666631 1122344444
Q ss_pred ----c-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 242 ----L-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 242 ----~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
. .+.+|+---.||+|..||..+++.+..+...
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 1 5677887778999999999999888777653
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=6.9 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.046 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL 242 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 242 (366)
.|..+..++.| ..++-.+.+|.+.++=.+.. -+-..+...+..|+|=.+.
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rw-G~~s~~eDgk~~v~CRt~~ 154 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRW-GKNSEFEDGKSTVNCRTTP 154 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhc-CccceecCCCceEEEEeec
Confidence 46778889998 56666678887766644433 1223333333445554444
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=11 Score=36.57 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=46.6
Q ss_pred ECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 017773 50 FDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE 129 (366)
Q Consensus 50 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 129 (366)
+..-|+.+..|+.+|.+.+|.+..............+......+ +..+|..+...+. -.+++.-+ |+.|.++++.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~--~~~ll~l~-dsqi~~~~l~ 96 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCAS--LELLLILS-DSQIAVHKLP 96 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcch--hcchheec-CCcceeeecC
Confidence 34457889999999999999987754332111111111111111 1356777777775 44444443 7778888877
Q ss_pred CCce
Q 017773 130 KKVP 133 (366)
Q Consensus 130 ~~~~ 133 (366)
+-+.
T Consensus 97 ~~~~ 100 (877)
T KOG2063|consen 97 ELEP 100 (877)
T ss_pred cccc
Confidence 6554
No 457
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.30 E-value=6.1 Score=33.23 Aligned_cols=279 Identities=12% Similarity=0.102 Sum_probs=120.1
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
..++.+|.|..+..-+|+|. .+.| +...++-............. -.-...++.|.. ...+++| ..+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~-------~~~~l~~I~f~~---~~g~ivG-~~g 81 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNP-------FDYHLNSISFDG---NEGWIVG-EPG 81 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S------------EEEEEEEET---TEEEEEE-ETT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCcc-------ceeeEEEEEecC---CceEEEc-CCc
Confidence 56899999996666677765 4543 34333222211111111000 001367788864 3344544 344
Q ss_pred cEEEEeCCCCceeEeeec---CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 122 VVMEYDLEKKVPIFERDE---HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
+.+...+.++.-..+.. -.. ....+....++... +.+ ..|.|+ .... .++.-..+.. .....+..+..+
T Consensus 82 -~ll~T~DgG~tW~~v~l~~~lpg-s~~~i~~l~~~~~~-l~~-~~G~iy--~T~D-gG~tW~~~~~-~~~gs~~~~~r~ 153 (302)
T PF14870_consen 82 -LLLHTTDGGKTWERVPLSSKLPG-SPFGITALGDGSAE-LAG-DRGAIY--RTTD-GGKTWQAVVS-ETSGSINDITRS 153 (302)
T ss_dssp -EEEEESSTTSS-EE----TT-SS--EEEEEEEETTEEE-EEE-TT--EE--EESS-TTSSEEEEE--S----EEEEEE-
T ss_pred -eEEEecCCCCCcEEeecCCCCCC-CeeEEEEcCCCcEE-EEc-CCCcEE--EeCC-CCCCeeEccc-CCcceeEeEEEC
Confidence 44444555543333221 112 33344444433333 333 345443 3331 2332222221 334588999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEec-CCCceeee--eeccc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNV-NDSRVIRT--YKGHV 274 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~-~~~~~~~~--~~~~~ 274 (366)
++| .+++++..-....-||.-.. .-...-+.-...|..|.|. ++.+.+ ....|.|++=+. ...+.-.. .....
T Consensus 154 ~dG-~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 154 SDG-RYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp TTS--EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred CCC-cEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCccc
Confidence 998 78888755555557775432 1222223345789999999 555444 458888888772 22221111 11112
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
.....+.+.+.+++...++|+. |.+ +...+.|+.=...... ..-..-+..+.|.+ +.+-+ ..+.+|.|.
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~-----~~~~~n~~~i~f~~---~~~gf-~lG~~G~ll 299 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG-----ENVPSNLYRIVFVN---PDKGF-VLGQDGVLL 299 (302)
T ss_dssp --S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG-----TTSSS---EEEEEE---TTEEE-EE-STTEEE
T ss_pred CceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc-----cCCCCceEEEEEcC---CCceE-EECCCcEEE
Confidence 2334566666588777777765 433 2334444432222110 11234578888876 43344 455788776
Q ss_pred EE
Q 017773 355 VF 356 (366)
Q Consensus 355 iw 356 (366)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 458
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.30 E-value=7.2 Score=34.05 Aligned_cols=144 Identities=11% Similarity=0.018 Sum_probs=74.7
Q ss_pred ceeEEEEecCCCCcEEEEEc-----------CCC-cEEEEeCCC--Cce--eEeeecCCCCceeeEEeccCCCceEEEec
Q 017773 99 KLSSLKWKPGTSGRVLGSGD-----------YDG-VVMEYDLEK--KVP--IFERDEHGGRRVWSVDYSKGDPVLGASGS 162 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 162 (366)
....|+|.++ |+++++-. ..+ .|.+++-.. ++. ...+...-. ....+++.+++ + ++++
T Consensus 15 ~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~-~p~Gi~~~~~G--l-yV~~ 88 (367)
T TIGR02604 15 NPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS-MVTGLAVAVGG--V-YVAT 88 (367)
T ss_pred CCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC-CccceeEecCC--E-EEeC
Confidence 3678999998 88877753 223 677776432 222 223332232 56789998877 5 3344
Q ss_pred CCCcEEEeeCCCC---CCceeEe---ecCCC--CCCCeEEEEEcCCCCcEEEE-Eec------------------CCeEE
Q 017773 163 DDGTMQMWDPRCD---GGKCVST---VQPSA--SRSAVCCVEFHPFGSSLVAA-GCA------------------DKKAY 215 (366)
Q Consensus 163 ~dg~v~~~d~~~~---~~~~~~~---~~~~~--~~~~i~~~~~~~~~~~~l~~-~~~------------------d~~i~ 215 (366)
.....++.|.... .++.... +.... +......++|.|+| .+.++ |+. .|.|.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 4433334454311 0011111 22110 12357889999998 44443 421 14455
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
-+|..+. ....+...-.....++|+ +++++++-.
T Consensus 168 r~~pdg~--~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGG--KLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCC--eEEEEecCcCCCccceECCCCCEEEEcc
Confidence 5555543 222332222334678888 777766544
No 459
>PLN02153 epithiospecifier protein
Probab=92.25 E-value=6.9 Score=33.73 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=32.4
Q ss_pred cEEEEEecC-----CeEEEEecCCCCCCeeEeec------ccC-cEEEEEEcCCCEEEEEeCC-----------CcEEEE
Q 017773 203 SLVAAGCAD-----KKAYAYDVRKMVDPVLVFDG------HRK-TVTYIRFLDVDTLVTAGTD-----------GCLKLW 259 (366)
Q Consensus 203 ~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~------~~~-~v~~~~~~~~~~l~~~~~d-----------~~i~iw 259 (366)
.+++.|+.+ ..+.+||+.+. .-..+.. ... .-.+++..++++++.|+.+ ..+.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 677777653 35788888764 2222211 111 1122233366777777754 246778
Q ss_pred ecCCC
Q 017773 260 NVNDS 264 (366)
Q Consensus 260 d~~~~ 264 (366)
|.++.
T Consensus 165 d~~~~ 169 (341)
T PLN02153 165 NIADG 169 (341)
T ss_pred ECCCC
Confidence 88765
No 460
>PLN02193 nitrile-specifier protein
Probab=92.10 E-value=9.1 Score=34.77 Aligned_cols=148 Identities=9% Similarity=0.056 Sum_probs=70.6
Q ss_pred CCceEEEecCC-----CcEEEeeCCCCCCceeEeecCC--CCCCCeEEEEEcCCCCcEEEEEecCC-----eEEEEecCC
Q 017773 154 DPVLGASGSDD-----GTMQMWDPRCDGGKCVSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCADK-----KAYAYDVRK 221 (366)
Q Consensus 154 ~~~l~~~~~~d-----g~v~~~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~ 221 (366)
+..+.+.|+.+ ..+..||+. +.+....-... .....-.+++.. ++ ++++.|+.++ .+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~--t~~W~~l~~~~~~P~~R~~h~~~~~-~~-~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTT--TNEWKLLTPVEEGPTPRSFHSMAAD-EE-NVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECC--CCEEEEcCcCCCCCCCccceEEEEE-CC-EEEEECCCCCCCCcceEEEEECCC
Confidence 34455666654 357888887 33322211110 011111222222 23 6777776543 467788766
Q ss_pred CCCCeeEeec------ccCcEEEEEEcCCCEEEEEeCC----CcEEEEecCCCceeeeeec---ccceeeeEEEEEecCC
Q 017773 222 MVDPVLVFDG------HRKTVTYIRFLDVDTLVTAGTD----GCLKLWNVNDSRVIRTYKG---HVNNRNFVGLSVWRHG 288 (366)
Q Consensus 222 ~~~~~~~~~~------~~~~v~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 288 (366)
. ....+.. .... ..++..++++++.++.+ ..+.+||+.+.+-...-.. ........+.. -++
T Consensus 304 ~--~W~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~ 378 (470)
T PLN02193 304 K--KWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGK 378 (470)
T ss_pred C--EEEeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECC
Confidence 4 1111111 1111 12222367777777755 4588999887643221110 11111111222 367
Q ss_pred CeEEEecCC--------------CeEEEEEeecCce
Q 017773 289 GLLGCGSET--------------NQVFVYDVRWGEP 310 (366)
Q Consensus 289 ~~l~~~~~d--------------g~i~iwd~~~~~~ 310 (366)
++++.|+.+ +.+.+||+.+.+-
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 777888753 2467778776543
No 461
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.03 E-value=8.5 Score=34.38 Aligned_cols=31 Identities=19% Similarity=0.070 Sum_probs=23.7
Q ss_pred ceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 327 GFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 327 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
..|.+++..+ ..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~---~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP---SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET---TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC---CcCEEEEEeCCCcEEEEEEeC
Confidence 3488999888 556999999999999999963
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.68 E-value=8.9 Score=33.79 Aligned_cols=149 Identities=12% Similarity=0.128 Sum_probs=80.3
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
...+..+++|.+++.+..-..++-||--. .... ..... ....++++.|.++ +..++++. .|.+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~~W~--~~~~~---------~~~~l~~v~~~~d--g~l~l~g~-~G~l- 303 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--PYWQ--PHNRA---------SARRIQNMGWRAD--GGLWLLTR-GGGL- 303 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--cceE--EecCC---------CccceeeeeEcCC--CCEEEEeC-CceE-
Confidence 44566778888777765433233343211 1000 00000 1235889999987 87777664 5654
Q ss_pred EEeCCCCc-----eeEeeecC-CCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-CCCCCCCeEEEEE
Q 017773 125 EYDLEKKV-----PIFERDEH-GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ-PSASRSAVCCVEF 197 (366)
Q Consensus 125 iw~~~~~~-----~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~ 197 (366)
++....++ ........ ....+.++.|.+++. + +.++..|.+....-. ++.-.... ...-....+.+.|
T Consensus 304 ~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~-~a~G~~G~v~~s~D~---G~tW~~~~~~~~~~~~ly~v~f 378 (398)
T PLN00033 304 YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-A-WAAGGSGILLRSTDG---GKSWKRDKGADNIAANLYSVKF 378 (398)
T ss_pred EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-E-EEEECCCcEEEeCCC---CcceeEccccCCCCcceeEEEE
Confidence 34444443 22222222 222588999987655 4 444567776665433 44333322 1222347889999
Q ss_pred cCCCCcEEEEEecCCeEEEE
Q 017773 198 HPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~ 217 (366)
.+++ +.+++| .+|.|.-|
T Consensus 379 ~~~~-~g~~~G-~~G~il~~ 396 (398)
T PLN00033 379 FDDK-KGFVLG-NDGVLLRY 396 (398)
T ss_pred cCCC-ceEEEe-CCcEEEEe
Confidence 8765 555555 77877654
No 463
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.57 E-value=10 Score=34.38 Aligned_cols=274 Identities=15% Similarity=0.035 Sum_probs=124.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...+|.++.++..|. +..|+.|| +..||..+++..+.... .. ..+|..+.-+- ...|..|+.+
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~--~~----------dk~I~al~~d~---qg~LWVGTdq 225 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP--PL----------DKAINALIADV---QGRLWVGTDQ 225 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC--cc----------hhhHHHHHHHh---cCcEEEEecc
Confidence 566788888888885 55667777 56666665443221000 00 02355554444 4467778766
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
| |.+.+.+..+.......-....|..+.-..+|.. -.|+..|-.+.--.+ .+-.....+.......|.++..+.+
T Consensus 226 G-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~l--WiGTenGl~r~~l~r--q~Lq~~~~~~~l~~S~vnsL~~D~d 300 (671)
T COG3292 226 G-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQGEL--WIGTENGLWRTRLPR--QGLQIPLSKMHLGVSTVNSLWLDTD 300 (671)
T ss_pred c-eEEEchhhccccccCCCCcchheeeeecccCCCE--EEeecccceeEecCC--CCccccccccCCccccccceeeccC
Confidence 6 7777766533222222222224555544444432 455555544322222 1111112222222335677777777
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcE---EEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee-cccc
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTV---TYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK-GHVN 275 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~ 275 (366)
| -+-+++.++.+++-+-.- .....+....+.+ ..++.. .+..+--...-|.+.+-+-.++..+.... ....
T Consensus 301 G--sLWv~t~~giv~~~~a~w--~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~ 376 (671)
T COG3292 301 G--SLWVGTYGGIVRYLTADW--KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM 376 (671)
T ss_pred C--CEeeeccCceEEEecchh--hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc
Confidence 6 355666666666544321 1111111111111 111111 11111111112233333334444433322 1223
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeec-CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
.++.+++. .++ .+-.|+...-+..|+..+ +....... .-..++|..+.=.| +++ |..|+.+|.++
T Consensus 377 nit~~~~d--~~g-~lWlgs~q~GLsrl~n~n~~avlde~a-------gl~ss~V~aived~---dns-LWIGTs~Glvk 442 (671)
T COG3292 377 NITTTLED--SRG-RLWLGSMQNGLSRLDNKNEWAVLDEDA-------GLPSSEVSAIVEDP---DNS-LWIGTSGGLVK 442 (671)
T ss_pred ccchhhhc--cCC-cEEEEecccchhhhccCCccccccccc-------CCcccceeeeeecC---CCC-EEEeccCCeEe
Confidence 44555554 433 444455543455566555 22222211 12356677777777 665 77788888554
No 464
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.55 E-value=12 Score=35.04 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=126.2
Q ss_pred EEEEecCCCCcEEEEEcCCCcEEEEeCC-CCceeEeeecCCCCceeeEEeccCC--CceEEEecCCCc-EEEeeCCCC--
Q 017773 102 SLKWKPGTSGRVLGSGDYDGVVMEYDLE-KKVPIFERDEHGGRRVWSVDYSKGD--PVLGASGSDDGT-MQMWDPRCD-- 175 (366)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~dg~-v~~~d~~~~-- 175 (366)
+..++|+ ...+-.|=....|.-|=+. +.+.+..+.-.....|.|+...... ..+.++|-.++. -++-.+..+
T Consensus 32 s~~~s~~--sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~ 109 (670)
T PF10395_consen 32 SDDFSPD--SNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVG 109 (670)
T ss_pred ecccCCC--CceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCc
Confidence 3366777 6666555545555555443 4566666665555477777764332 233355544443 343333311
Q ss_pred -------CCc--eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CCeeEee-cccC------cEEE
Q 017773 176 -------GGK--CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DPVLVFD-GHRK------TVTY 238 (366)
Q Consensus 176 -------~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~------~v~~ 238 (366)
..+ ....++. ...+-.+.+.+++ ..+++...+|.|.+||..... ..+..+. .+.. -|..
T Consensus 110 ~~~~~~~~~e~~~~~~~kl---~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~ 185 (670)
T PF10395_consen 110 STEDGTVNSETTNEFELKL---DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVND 185 (670)
T ss_pred cccccccCccccceEEEEc---ccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcc
Confidence 011 1222222 3488899999887 788888899999999993221 0000111 1111 1222
Q ss_pred EEEc-CCCEEEEEeC-CC---cEEEEec-CCCceeeeee---cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 239 IRFL-DVDTLVTAGT-DG---CLKLWNV-NDSRVIRTYK---GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 239 ~~~~-~~~~l~~~~~-d~---~i~iwd~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
...- ..+++++-+. ++ ..+++.+ .+...+.++. .+........|++ .+|.+..- .++.|.+|++.+.+
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y-~~G~LY~l--~~~~i~~ysip~f~ 262 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCY-QFGKLYQL--SKKTISSYSIPNFQ 262 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEE-eCCEEEEE--eCCEEEEEEcCCce
Confidence 2211 2345554443 32 4677777 1223333332 1222223344554 35654444 67799999999888
Q ss_pred eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
....+.++.. ....... .+.+.|.+++ +.|++ .++.|++.|+.-..
T Consensus 263 ~~~tI~l~~i--i~~~~~~--~vSl~~~s~n-RvLLs--~~nkIyLld~~~~s 308 (670)
T PF10395_consen 263 IQKTISLPSI--IDKESDD--LVSLKPPSPN-RVLLS--VNNKIYLLDLKFES 308 (670)
T ss_pred EEEEEEechh--hcccccc--ceEeecCCCC-eEEEE--cCCEEEEEeehhhh
Confidence 8777765521 1111112 2334443323 45554 46679999886543
No 465
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.51 E-value=12 Score=35.01 Aligned_cols=167 Identities=10% Similarity=0.131 Sum_probs=89.6
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC-----CCCcEEEEEec-C---Ce
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP-----FGSSLVAAGCA-D---KK 213 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~l~~~~~-d---~~ 213 (366)
..|..+.+.++++.+ ++.-.+|.|.+||......+.+..+.......-+.+ .|-+ ++..++++-+. + -.
T Consensus 130 ~kvv~Ik~~~~~~~I-~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 130 DKVVGIKFSSDGKII-YVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cceEEEEEecCCCEE-EEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 389999999888877 788889999999994222222222222111111111 2222 22244444433 2 24
Q ss_pred EEEEecCCCCCCeeEee---cccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecc---cce-eeeEEEEE
Q 017773 214 AYAYDVRKMVDPVLVFD---GHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH---VNN-RNFVGLSV 284 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~-~~~~~~~~ 284 (366)
.+++.+......+..+. .+........|. .|.+..- .+++|.+|++.+.+..+++.-. ... -..+++.+
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 66777732223333332 222223333443 5554433 6789999999888777666532 010 12334432
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
|..++++-+ .++.|++.|+.-...+..++
T Consensus 286 -~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 -PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 444444444 34689999997666555544
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.50 E-value=1.8 Score=34.50 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEee-------ec------CCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFER-------DE------HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-------~~------~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
+.+|++.+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+ ++-+ +|..+.|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEe-CCCEEEeccc
Confidence 778999999999999999987654322 11 122367788888777655 4433 5677888876
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.19 E-value=2.6 Score=32.14 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.0
Q ss_pred CceeEEEEecCC----CCcEEEEEcCCCcEEEEeCCC
Q 017773 98 AKLSSLKWKPGT----SGRVLGSGDYDGVVMEYDLEK 130 (366)
Q Consensus 98 ~~v~~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~ 130 (366)
..+.+++|+|.+ .+-+|++-+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999952 235788889999999998764
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=3.9 Score=40.70 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEE--------eccCCCceEEEecCCCcEEEeeCCCCCC-----ceeEeecCC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVD--------YSKGDPVLGASGSDDGTMQMWDPRCDGG-----KCVSTVQPS 186 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~l~~~~~~dg~v~~~d~~~~~~-----~~~~~~~~~ 186 (366)
|..+.+|+.+++.....+.+-.. .|..+. |.|.=+++++.++. -.|.++-+..... .....++..
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~sh-tIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSH-TILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhh-hheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence 78899999999776666655544 555544 23333455444442 3455554431111 111112222
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecCCeEEEE--ecCCC---C---C-------------CeeEee-cccCcEEEEEEc-C
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCADKKAYAY--DVRKM---V---D-------------PVLVFD-GHRKTVTYIRFL-D 243 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~---~---~-------------~~~~~~-~~~~~v~~~~~~-~ 243 (366)
.....|.|+....+| +++++| .||.++-. ....+ . + .+..+. .+..+|..+... .
T Consensus 176 ~dg~~V~~I~~t~nG-RIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENG-RIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCC-cEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 334588999988887 666666 66644422 11111 0 0 011223 567799999998 6
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 017773 244 VDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~ 263 (366)
-+.+.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 67888999999999999976
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.92 E-value=1.5 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=25.6
Q ss_pred cCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC
Q 017773 152 KGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS 186 (366)
Q Consensus 152 ~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 186 (366)
|+++.++++...++.|.++|.. +.+.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~--~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA--TNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC--CCeEEEEEECC
Confidence 5677786777778999999998 77777777653
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.72 E-value=4.6 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCC-----CcEEEEEecCCeEEEEecCC
Q 017773 190 SAVCCVEFHPFG-----SSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 190 ~~i~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~ 221 (366)
..+..++|+|.| +-+|++-+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 35788889999999997654
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.58 E-value=11 Score=32.81 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=104.9
Q ss_pred CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC----CCCcE-EEEEe-cC---CeEEEEecCCCCCC
Q 017773 155 PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP----FGSSL-VAAGC-AD---KKAYAYDVRKMVDP 225 (366)
Q Consensus 155 ~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~-l~~~~-~d---~~i~i~d~~~~~~~ 225 (366)
+.+++....++-+.+||+. ++.+..+.. + .++.+..-. .|... |++++ .+ .+|++|.+......
T Consensus 68 kSlIigTdK~~GL~VYdL~---Gk~lq~~~~-G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD---GKELQSLPV-G---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp G-EEEEEETTTEEEEEETT---S-EEEEE-S-S----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred cceEEEEeCCCCEEEEcCC---CcEEEeecC-C---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 3454777788899999998 777777752 2 344333311 23222 33443 32 47999987643223
Q ss_pred eeEeec-------ccCcEEEEEEc----CCC-EEEEEeCCCcEEEEecC---CC----ceeeeeecccceeeeEEEEEec
Q 017773 226 VLVFDG-------HRKTVTYIRFL----DVD-TLVTAGTDGCLKLWNVN---DS----RVIRTYKGHVNNRNFVGLSVWR 286 (366)
Q Consensus 226 ~~~~~~-------~~~~v~~~~~~----~~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~ 286 (366)
+..+.. ....++.+|+. ++. +.+....+|.+..|.+. ++ +++++|.... .+..+... .
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVD--D 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVD--D 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEE--T
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEe--c
Confidence 333321 12346777773 344 56677888988888775 22 4677776544 44555555 7
Q ss_pred CCCeEEEecCCCeEEEEEeecC--ceEEEEecccccccCCCCceeeEEEeeccCC-CceEEEEeCCCCcEEEEEecc
Q 017773 287 HGGLLGCGSETNQVFVYDVRWG--EPVWVHDFEPVTAAGSERGFVSSVCWRRVGE-DECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 287 ~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~s~~~dg~i~iw~~~~ 360 (366)
...+|+.+-++--|.-|+.+.. .....+.... -.+....|-.|+.-.... .|.+|+|.-.+++..||+.+.
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~---g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD---GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS---SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc---ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 7788999988866666665422 1111111100 022345677888765331 455666666788899999764
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.53 E-value=7.2 Score=30.65 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=82.3
Q ss_pred EEEEEecCCeEEEEecCC-CCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC------cEEEE---ecC--CCceee-e
Q 017773 204 LVAAGCADKKAYAYDVRK-MVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG------CLKLW---NVN--DSRVIR-T 269 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~------~i~iw---d~~--~~~~~~-~ 269 (366)
.|+.+...+.|.+|++.+ ..++...+.. -+.|..+.++ .|++++|--.+. .+|+| +.. ...++. .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 444445778899999983 3345556654 4789999999 999999865332 45654 222 111221 1
Q ss_pred eecc---------------------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce----EEEEecccccccCC
Q 017773 270 YKGH---------------------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP----VWVHDFEPVTAAGS 324 (366)
Q Consensus 270 ~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~ 324 (366)
+-|| ..+..+++.+ |-..-|+.|+ ++.+.+|.+..... ...+++........
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC--~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACC--PVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEec--CCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1121 2234566666 5433444444 35899998865433 23334433222222
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
-.-.+..+++.. .++|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic~-----~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAICE-----GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEEe-----eEEEEec-CCEEEEEEEe
Confidence 233467788854 3777665 5557787764
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.51 E-value=11 Score=32.88 Aligned_cols=223 Identities=16% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEeeecCC--CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC
Q 017773 110 SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG--GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA 187 (366)
Q Consensus 110 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 187 (366)
....++.+..+|.|.-.|.++++.+....... . .+..-.+..+|+ + +.++.++.+..+|.+ +++.........
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~-~~~~~~~~~~G~-i-~~g~~~g~~y~ld~~--~G~~~W~~~~~~ 141 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA-QLSGPILGSDGK-I-YVGSWDGKLYALDAS--TGTLVWSRNVGG 141 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcce-eccCceEEeCCe-E-EEecccceEEEEECC--CCcEEEEEecCC
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc--CcEEEEEEc-CCCEEEEEeC--CCcEEEEecC
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFL-DVDTLVTAGT--DGCLKLWNVN 262 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~--d~~i~iwd~~ 262 (366)
. ..+..-..-.++ .+..++.++.++..|..++ ...-...... .....-... ....++.+.. ++.+.-.|..
T Consensus 142 ~-~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 142 S-PYYASPPVVGDG--TVYVGTDDGHLYALNADTG-TLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred C-eEEecCcEEcCc--EEEEecCCCeEEEEEccCC-cEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEcc
Q ss_pred CCceeee----eeccccee---eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 263 DSRVIRT----YKGHVNNR---NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 263 ~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
++..... .......+ ..+..-.--.+.-+..++.++.+...|..+++.++..... .-..........
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~~~~~~~~~ 291 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQGSGLYTTP 291 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc------cEeccCCeeEEe
Q ss_pred ccCCCceEEEEeCCCCcEEEEE
Q 017773 336 RVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
. .+ .||.+.++.
T Consensus 292 ~---~~-------~dG~v~~~~ 303 (370)
T COG1520 292 V---AG-------ADGKVYIGF 303 (370)
T ss_pred e---cC-------CCccEEEEE
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=7 Score=39.10 Aligned_cols=159 Identities=11% Similarity=0.121 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc---CC------CEEEEEeCCCcEEEEecCC
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL---DV------DTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~------~~l~~~~~d~~i~iwd~~~ 263 (366)
+.+-+-|.=++..++ .|+.+.+|+.++. .....+.+-...|..+..- .| ++++.-+.--.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 344444443244444 6899999999986 4556666666666666553 11 2333333344455553321
Q ss_pred ----Cc---eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee--cC-----ceEEEEe---------ccccc
Q 017773 264 ----SR---VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR--WG-----EPVWVHD---------FEPVT 320 (366)
Q Consensus 264 ----~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~-----~~~~~~~---------~~~~~ 320 (366)
+. ....+.-...+++..++....+|+.+++|- || .+|.+. .. +....+. .+...
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 11 111122223233333333347888887775 45 455542 11 1011110 01111
Q ss_pred cc-CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 321 AA-GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 321 ~~-~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.. ..+..+|..++... .-+.|.+-+..|+|.+|++.+
T Consensus 236 ~~~~~~~dpI~qi~ID~---SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDN---SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEecc---ccceeeeeccCceEEEEEccC
Confidence 12 36778999999976 556899999999999999976
No 475
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.98 E-value=20 Score=34.87 Aligned_cols=190 Identities=9% Similarity=-0.021 Sum_probs=102.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEeee-------cCCCCceeeEEe--ccCCCceEEEecC--CCcEEEeeCCCCCC---
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPIFERD-------EHGGRRVWSVDY--SKGDPVLGASGSD--DGTMQMWDPRCDGG--- 177 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~v~~i~~--~~~~~~l~~~~~~--dg~v~~~d~~~~~~--- 177 (366)
.-++.....|.+++|-.+......+.. +.....++..++ ..+|+.+++++.. .+.|++|.+...-+
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 445556678999999774332222211 122335555444 4566666555544 57888876542111
Q ss_pred ----c---eeEeecC---C---C-------------CCCCeEEEEEcC------CCCcEEEEEec----CCeEEEEecCC
Q 017773 178 ----K---CVSTVQP---S---A-------------SRSAVCCVEFHP------FGSSLVAAGCA----DKKAYAYDVRK 221 (366)
Q Consensus 178 ----~---~~~~~~~---~---~-------------~~~~i~~~~~~~------~~~~~l~~~~~----d~~i~i~d~~~ 221 (366)
. +...+.. . . ....++.+.|-+ ....++++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 1111100 0 0 112556666654 12234544432 34689999876
Q ss_pred CCCCeeEe--------------------e-----cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee----e
Q 017773 222 MVDPVLVF--------------------D-----GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY----K 271 (366)
Q Consensus 222 ~~~~~~~~--------------------~-----~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~ 271 (366)
....+... . ...+.|.++... -+.+++..-.||+|.++|-.+.+.+... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 42222111 0 123456677766 6678899999999999998887655444 1
Q ss_pred ccc-------c--ee----eeEEEEEecCCCeEEEecCCCeEE
Q 017773 272 GHV-------N--NR----NFVGLSVWRHGGLLGCGSETNQVF 301 (366)
Q Consensus 272 ~~~-------~--~~----~~~~~~~~~~~~~l~~~~~dg~i~ 301 (366)
... . .. ..+.+++||.+.-++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 000 0 00 112234558888888888888765
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.84 E-value=1.2 Score=38.85 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=91.9
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CC-CCCCeE-EEEEcCCCCcEEEEEecCCeEEEE-ec
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SA-SRSAVC-CVEFHPFGSSLVAAGCADKKAYAY-DV 219 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~l~~~~~d~~i~i~-d~ 219 (366)
.|..+-..|+++.+ +.-+. ..+.++++.+...+..+.... ++ ....|+ .+..-. |..-+.+++.||-|.-| |.
T Consensus 222 ~v~qllL~Pdg~~L-Yv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 222 DVSQLLLTPDGKTL-YVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred chHhhEECCCCCEE-EEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 78888899999987 44333 578888887322222222211 01 001222 111122 34678888899988766 66
Q ss_pred CCCCCCe----eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 220 RKMVDPV----LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 220 ~~~~~~~----~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
+....+. +.++-...++..+.-- +.+-|++-+..|++..+.....+.+-.-. -......++++ |++.++++-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~S--p~~~~Ll~e 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMS--PNQAYLLSE 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeC--cccchheee
Confidence 6543321 1222222333333333 45668888889999888755544332222 22244566777 999998886
Q ss_pred cCCCeEEEEEeecCceE
Q 017773 295 SETNQVFVYDVRWGEPV 311 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~~ 311 (366)
. .|.++++.+++..+.
T Consensus 376 ~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 376 D-QGKIRLAQLENRNPE 391 (733)
T ss_pred c-CCceEEEEecCCCCC
Confidence 4 578999999876543
No 477
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.70 E-value=0.91 Score=43.02 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=70.1
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEE-----------EEecCCCCc
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSL-----------KWKPGTSGR 112 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~ 112 (366)
.|.-+-|-++..++..+..++.+++.+++..... .+.+| ...+..+ ..+|| |.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~rsH----------s~~~~d~a~~~~g~~~l~~lSpD--Gt 248 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----LFRSH----------SQRVTDMAFFAEGVLKLASLSPD--GT 248 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHHH----HHHhc----------CCCcccHHHHhhchhhheeeCCC--Cc
Confidence 3444444456678888888999998877653321 11112 2223332 26788 99
Q ss_pred EEEEEcCCCcEEEEeCCC-C----ceeEeeecCCCCceeeEEeccCC---------CceEEEecCCCcEEEeeCCCCCCc
Q 017773 113 VLGSGDYDGVVMEYDLEK-K----VPIFERDEHGGRRVWSVDYSKGD---------PVLGASGSDDGTMQMWDPRCDGGK 178 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~-~----~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~~~~dg~v~~~d~~~~~~~ 178 (366)
.++.+..||.++.|.+.- + ++....+.|.+.+-.|.-++.+. ..+|-+...+..+++|... ..+
T Consensus 249 v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a--~w~ 326 (1283)
T KOG1916|consen 249 VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA--PWQ 326 (1283)
T ss_pred EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc--chh
Confidence 999999999999987642 2 34455666664343343344321 1232333445678888876 555
Q ss_pred ee
Q 017773 179 CV 180 (366)
Q Consensus 179 ~~ 180 (366)
|.
T Consensus 327 Cl 328 (1283)
T KOG1916|consen 327 CL 328 (1283)
T ss_pred hh
Confidence 55
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.54 E-value=12 Score=31.95 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCe------EEEEecCCCC---CCee-----EeecccC--------cEEEEEEc-CCCE
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKK------AYAYDVRKMV---DPVL-----VFDGHRK--------TVTYIRFL-DVDT 246 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~~---~~~~-----~~~~~~~--------~v~~~~~~-~~~~ 246 (366)
+.+..+.+.|++ ..+++-+.+|. ++.+++.... ..+. .+....+ ..-+|++. ++.+
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367888898655 34555556776 6666654410 1111 1111111 23467775 7777
Q ss_pred EEEEeCC------CcEEEEecCCCceeeeeec---------------ccceeeeEEEEEecCCCeEEEecC-----CC--
Q 017773 247 LVTAGTD------GCLKLWNVNDSRVIRTYKG---------------HVNNRNFVGLSVWRHGGLLGCGSE-----TN-- 298 (366)
Q Consensus 247 l~~~~~d------~~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~-----dg-- 298 (366)
+++.-.+ ..|..++.. ++.+..+.. .......+++. |+|+.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~--~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS--PDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC--CCCCEEEEEECccccCCCcc
Confidence 7777666 778888866 655544421 11223455555 99996665533 22
Q ss_pred -------eEEEEEee--c-CceEEEEecccc--cccCCCCceeeEEEeeccCCCceEEEEe-----CCCCcEEEEEec
Q 017773 299 -------QVFVYDVR--W-GEPVWVHDFEPV--TAAGSERGFVSSVCWRRVGEDECTLVAG-----GSDGLLHVFVGK 359 (366)
Q Consensus 299 -------~i~iwd~~--~-~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~ 359 (366)
.++++... + +++...+.+... ... .....|..+.+-+ ++++|+-= +....++|+.+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-~~~~~isd~~al~---d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-PGDNGISDIAALP---DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccc-cCCCCceeEEEEC---CCcEEEEEccCCCCccceEEEEEEE
Confidence 15555544 3 333333322211 000 1346788999988 77666532 134556777654
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.52 E-value=8.8 Score=30.17 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=34.0
Q ss_pred cEEEEEcCCCcEEEEeCCCC--ceeEeeecCCCCceeeEEeccCCCceEEEe
Q 017773 112 RVLGSGDYDGVVMEYDLEKK--VPIFERDEHGGRRVWSVDYSKGDPVLGASG 161 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 161 (366)
+.|+.+.....|.+|++... +....+..- +.|..+.++..|+++ ++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~GDYl-vTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAGDYL-VTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEeccccceE-EEE
Confidence 45555566788999999843 445555444 389999999999998 654
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.50 E-value=3.3 Score=36.25 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=91.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCcee-EEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLS-SLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~ 119 (366)
..+.|..+-..|||+.+..-+. ..+.++++.+.....+ .+..... .+ ....|+ .+..... |..|..+..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--kl~~dsp-g~----~~~~Vte~l~lL~G--g~SLLv~~~ 288 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--KLVDDSP-GD----SRHQVTEQLYLLSG--GFSLLVVHE 288 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--hhhhcCC-Cc----hHHHHHHHHHHHhC--ceeEEEEcC
Confidence 4667888889999997776554 6789998877543321 1111000 00 001122 2222233 677888889
Q ss_pred CCcEEEE-eCCCC-ce----eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeE
Q 017773 120 DGVVMEY-DLEKK-VP----IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVC 193 (366)
Q Consensus 120 dg~i~iw-~~~~~-~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~ 193 (366)
||.|.-| |...+ .+ ++.++-... ++..+.-. +.+.-+++-+..|++.++... ..+.+..-. -...+.
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa-~~~~l~pe-~~rkgF~~l~~~G~L~~f~st--~~~~lL~~~---~~~~~~ 361 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPA-EVQFLLPE-TNRKGFYSLYRNGTLQSFYST--SEKLLLFER---AYQAPQ 361 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcc-cceeeccc-cccceEEEEcCCCceeeeecc--cCcceehhh---hhcCcc
Confidence 9999888 44332 21 111111111 33333322 233445778888888888765 333322221 122667
Q ss_pred EEEEcCCCCcEEEEEecCCeEEEEecCCC
Q 017773 194 CVEFHPFGSSLVAAGCADKKAYAYDVRKM 222 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 222 (366)
-++++|++ .++++- ..|.++++.+++.
T Consensus 362 ~~~~Sp~~-~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 362 LVAMSPNQ-AYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eeeeCccc-chheee-cCCceEEEEecCC
Confidence 78999998 566664 6688999988876
No 481
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=19 Score=33.95 Aligned_cols=205 Identities=14% Similarity=0.093 Sum_probs=101.2
Q ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-+..-++..+|..- -++ +.--.|+||++....... ....| .++..+.|+.+ ..|+....+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~---~~w~~-----------~~lI~mgWs~~---eeLI~v~k~ 103 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGR---ILWKH-----------GELIGMGWSDD---EELICVQKD 103 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEeccccchHH---HHhcC-----------CCeeeecccCC---ceEEEEecc
Confidence 34455666666321 112 223468888876543322 11122 25888999985 556667789
Q ss_pred CcEEEEeCCCCceeEe-e-ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CCCCCCeEEEEE
Q 017773 121 GVVMEYDLEKKVPIFE-R-DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SASRSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~-~-~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~ 197 (366)
|++.+|++-....... . .......|..+.+..+|- +.-..+|.+.+-.-. .......+.. +.....-.|-..
T Consensus 104 g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV---avlt~~g~v~~i~~~--~~~~~~~~~diP~~~~~~~~Wt~ 178 (829)
T KOG2280|consen 104 GTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV---AVLTVSGQVILINGV--EEPKLRKMPDIPYNELPKSCWTV 178 (829)
T ss_pred ceEEEeecchhhhcccccccccccCceeEEEEecCce---EEEecCCcEEEEcCC--CcchhhhCCCCCCccCCCcceeE
Confidence 9999999854322210 1 111112455555555442 333344555543322 1223333322 122112233333
Q ss_pred cCCCCc--EEEEEe-cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 198 HPFGSS--LVAAGC-ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 198 ~~~~~~--~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
.+++.. .++--. ..+ ..++-..........+......+..+..+ +.++|+--...|.|.+-+....+.+..+.
T Consensus 179 ~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 179 FQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 332211 111110 001 11122222211222233234567788888 88889989999999998888777776665
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.35 E-value=23 Score=34.84 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=97.8
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECCCCC--EEEEeec-----------CCeEEEEEceecccccceeeeec
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDS--VFATGGI-----------ARKIRIYNIKSVLVDHPVVAVVD 85 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~--~l~t~~~-----------dg~i~iw~~~~~~~~~~~~~~~~ 85 (366)
.+..+++.++..+...+-+--.-.-.|.++.|+..+. ++++|.. +|.++.|++-.....- .+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l---ellh 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL---ELLH 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee---eeee
Confidence 3566777777665544432112344567777776443 4444432 3345555543322110 1111
Q ss_pred CceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC-CCceeeEEeccCCCceEEEecCC
Q 017773 86 HSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG-GRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
+.. -+++| .+..|. ..++++|- ...+++|++...+..+...... ...|..+++. +.++ +.|...
T Consensus 931 ~T~-------~~~~v--~Ai~~f--~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI-~VgD~q 995 (1205)
T KOG1898|consen 931 KTE-------IPGPV--GAICPF--QGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARI-VVGDIQ 995 (1205)
T ss_pred ccC-------CCccc--eEEecc--CCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEE-EEeecc
Confidence 110 12233 344565 44555544 5689999998876655433222 2267777775 4556 666665
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecC
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR 220 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 220 (366)
-.+.++..+. ..+.+..+-...-+..|+++.+-..+ .+|.+..-|.+.+..+.
T Consensus 996 eSV~~~~y~~-~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 996 ESVHFVRYRR-EDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ceEEEEEEec-CCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECC
Confidence 5666555542 24555555544445577777776553 67777777777766554
No 483
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.25 E-value=23 Score=34.57 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEEc-eecccccceeeeecCceece-eeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 42 SDSIGVIEFDP-SDSVFATGGIARKIRIYNI-KSVLVDHPVVAVVDHSKVCD-YYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 42 ~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
..+...++|+| +.+.||..+..|.-.||++ ...+...............- .-......-..+.|.++ ...|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~--~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD--SNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC--CCEEEEEc
Q ss_pred CCCcEEEEeCCCCceeE-eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCC------
Q 017773 119 YDGVVMEYDLEKKVPIF-ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSA------ 191 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~------ 191 (366)
...+.++|+++..... .........|.++.-++..... +.--....|...++..........+......+.
T Consensus 223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~-~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLr 300 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSH-VFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLR 300 (765)
T ss_pred -CCceEEEECCCCCccchhccCCChhheeeEEecCCccce-EEEEecCeEEEEEccCCCCCeeeeeecccccCCCCCceE
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEec
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 219 (366)
+.......+.-.+++..-....|.+|.+
T Consensus 301 l~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 301 LSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EEEEEcCCCEEEEEEEcCCCCcEEEEEE
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.02 E-value=16 Score=32.83 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC----CCCcEEEEEc
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG----TSGRVLGSGD 118 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~~ 118 (366)
...+.|+|.|||++|++--..|.|++++..+... .............+ ......|+++|+ ....+|+...
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-----~~~~~l~~v~~~~g-e~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEV-----KVVFTLPEIVNDAQ-HNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-----eeeecCCceeccCC-CCceeeEEECCCccccCCCcEEEEEE
Q ss_pred ----------CCCcEEEEeCC--------CCceeEeeecCCCCceeeEEeccCCCceEEEecC
Q 017773 119 ----------YDGVVMEYDLE--------KKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD 163 (366)
Q Consensus 119 ----------~dg~i~iw~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 163 (366)
....|.-|.+. ....+..+.......-..|.|.|++..++.+|..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.73 E-value=16 Score=32.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=14.0
Q ss_pred CcEEEEEcCC-----------CcEEEEeCCCCc
Q 017773 111 GRVLGSGDYD-----------GVVMEYDLEKKV 132 (366)
Q Consensus 111 ~~~l~~~~~d-----------g~i~iw~~~~~~ 132 (366)
+.+.+.|+.+ ..+..||..+.+
T Consensus 85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 5666766643 246778887654
No 486
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.08 E-value=2.4 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=23.7
Q ss_pred eEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 290 LLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 290 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.++.++.+|.|.-.|.++|+.++.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556689999999999999999988754
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.77 E-value=1.5 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=21.6
Q ss_pred CeEEEecCCCeEEEEEeecCceEEEE
Q 017773 289 GLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
..++.++.+|.+..+|.++|+.++..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35777888999999999999887653
No 488
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.44 E-value=17 Score=30.81 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCcEEEEeCCC--CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEK--KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
+++|+.|+.+| +.+.++.. .+....+ ...+|+++...+..+.+++-++....++.+++.
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 36899999888 45555654 2233222 223899999999888876667666679999985
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.39 E-value=3 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=21.0
Q ss_pred ceeeEEeccCCCceEEEecCC--CcEEEe
Q 017773 144 RVWSVDYSKGDPVLGASGSDD--GTMQMW 170 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~d--g~v~~~ 170 (366)
.-....|+|+|+.+++++..+ |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 567889999999998888877 766665
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.89 E-value=17 Score=30.31 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe------cCCeEEEEecCCCCCCeeEeec-----c
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC------ADKKAYAYDVRKMVDPVLVFDG-----H 232 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~-----~ 232 (366)
-..|++||.. ..+....-. +-.+.|+.+.|..+. ++++.|. ....+..||..+. ....+.. -
T Consensus 15 C~~lC~yd~~--~~qW~~~g~--~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~i 87 (281)
T PF12768_consen 15 CPGLCLYDTD--NSQWSSPGN--GISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSI 87 (281)
T ss_pred CCEEEEEECC--CCEeecCCC--CceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccC
Confidence 3469999987 333332222 345589999998654 6777774 3556888998774 3333433 2
Q ss_pred cCcEEEEEEc--CCC-EEEEEe-CC--CcEEEEecCCCceeee
Q 017773 233 RKTVTYIRFL--DVD-TLVTAG-TD--GCLKLWNVNDSRVIRT 269 (366)
Q Consensus 233 ~~~v~~~~~~--~~~-~l~~~~-~d--~~i~iwd~~~~~~~~~ 269 (366)
.+++..+.+. +.. ..+.|. .+ ..|..||-.+...+..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 3788888874 444 343433 23 3577787666555444
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.66 E-value=6 Score=37.08 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=46.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
.++++.-+|. ++.++.+..||.|.+|+....+......... |-..+.|...| + ++...|..+.-|.-.
T Consensus 16 ~~~aiqshp~--~~s~v~~~~d~si~lfn~~~r~qski~~~~~--p~~nlv~tnhg--l-~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPG--GQSFVLAHQDGSIILFNFIPRRQSKICEEAK--PKENLVFTNHG--L-VTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCC--CceEEEEecCCcEEEEeecccchhhhhhhcC--Cccceeeeccc--e-EEEeccchhheeecc
Confidence 4788888898 9999999999999999987654422222211 33455565444 3 666677777777644
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.39 E-value=5.2 Score=37.17 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 287 HGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 287 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+..+|++.+.|+.+++||+.+++++......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6789999999999999999999997766543
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.30 E-value=3.4 Score=38.37 Aligned_cols=84 Identities=12% Similarity=-0.069 Sum_probs=44.3
Q ss_pred CCCCEEEEeecCCeEEEEEceecc---cccceeeeecCceecee-----------eeecCCceeEEEEec----CCCCcE
Q 017773 52 PSDSVFATGGIARKIRIYNIKSVL---VDHPVVAVVDHSKVCDY-----------YICTPAKLSSLKWKP----GTSGRV 113 (366)
Q Consensus 52 ~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~----~~~~~~ 113 (366)
++...++.+..||.+......... .......+ ........ .......+..++.++ + ..+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELF-NDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEIND--DTF 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ET--TTE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEe-CCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCC--CCE
Confidence 456678888889988887766411 11100000 00000000 001123355556655 4 789
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeee
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERD 138 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~ 138 (366)
|++.+.|+++++||+.+++++....
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999999866553
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.16 E-value=3.8 Score=22.17 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=21.8
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeec
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 231 (366)
|+++.++++...++.|.++|..+. +.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence 456455555667899999999776 55555544
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.91 E-value=22 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=14.9
Q ss_pred CcEEEEEcCC-----------CcEEEEeCCCCce
Q 017773 111 GRVLGSGDYD-----------GVVMEYDLEKKVP 133 (366)
Q Consensus 111 ~~~l~~~~~d-----------g~i~iw~~~~~~~ 133 (366)
+.+.+.|+.+ ..+..||+.+.+-
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 6677777653 2467788876643
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.78 E-value=21 Score=30.44 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=45.4
Q ss_pred cEEEEEec-----CCeEEEEecCCCCCCeeEeec-c-cCcEEEEE-EcCCCEEEEEeCCCc----EEEEecCCCce--ee
Q 017773 203 SLVAAGCA-----DKKAYAYDVRKMVDPVLVFDG-H-RKTVTYIR-FLDVDTLVTAGTDGC----LKLWNVNDSRV--IR 268 (366)
Q Consensus 203 ~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~-~-~~~v~~~~-~~~~~~l~~~~~d~~----i~iwd~~~~~~--~~ 268 (366)
.+.+.|+. ...+..||+.+. .-..+.. . .......+ ..++++++.|+.++. +.+||.++.+- +.
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 67777764 246888998764 2222221 1 11112222 226778888876643 56788876532 22
Q ss_pred eeeccccee---eeEEEEEecCCCeEEEecCC
Q 017773 269 TYKGHVNNR---NFVGLSVWRHGGLLGCGSET 297 (366)
Q Consensus 269 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 297 (366)
.......+. ....+. ..++++++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIK-INESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEE-ECCCEEEEECCcC
Confidence 111000111 111122 1467788888876
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.80 E-value=25 Score=30.37 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=19.9
Q ss_pred CeEEEEecCCCCCCeeEeec--cc-CcEEEEEEcCCCEEEEEeCC
Q 017773 212 KKAYAYDVRKMVDPVLVFDG--HR-KTVTYIRFLDVDTLVTAGTD 253 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~l~~~~~d 253 (366)
..+.+||..+. .-..... .. ..-.+++..++++++.|+.+
T Consensus 168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 46888888764 2222211 11 11123333377777777753
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.60 E-value=22 Score=29.62 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=51.0
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe------CCCcEEEEecCCCceeeeeec-----ccceeee
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG------TDGCLKLWNVNDSRVIRTYKG-----HVNNRNF 279 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~ 279 (366)
..|++||..+. +-...-.+-.+.|+.+.|. +.++++.|. ....+..||..+..- ..+.+ -.+++..
T Consensus 16 ~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 45899998765 2222233456789999998 555555554 345688899877642 22222 1245555
Q ss_pred EEEEEecCC-CeEEEec-CCC--eEEEEEe
Q 017773 280 VGLSVWRHG-GLLGCGS-ETN--QVFVYDV 305 (366)
Q Consensus 280 ~~~~~~~~~-~~l~~~~-~dg--~i~iwd~ 305 (366)
+.+.- .|+ ++.++|. .+| .|..||=
T Consensus 94 ~~~~~-~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFIS-NDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeec-cCCceEEEeceecCCCceEEEEcC
Confidence 55542 233 3444443 233 4556653
No 499
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.86 E-value=4.2 Score=19.93 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.3
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEE
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYN 70 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~ 70 (366)
+.|.+++..+. +++.+...+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 45788887754 788888889999974
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.66 E-value=37 Score=32.51 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=37.1
Q ss_pred ccccceeeeeecCCCceeeecCCCCcc---------CCCceEEEEECCCCCEEEEeecCCeEEEEEc
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAA---------VSDSIGVIEFDPSDSVFATGGIARKIRIYNI 71 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~---------h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~ 71 (366)
+-.......+..+++-++....++... -.+.|-+.+||.|.+.++....+.+|.+++-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 334444455555555555444444311 5677899999999987776666778888764
Done!