Query 017773
Match_columns 366
No_of_seqs 750 out of 1686
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 04:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 7.1E-52 2.4E-56 363.1 36.4 284 40-359 106-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 5.6E-51 1.9E-55 345.6 38.4 286 40-359 30-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 1.4E-49 4.8E-54 340.2 38.8 282 39-357 52-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.7E-49 5.8E-54 334.3 38.5 286 40-360 11-302 (304)
5 3iz6_a 40S ribosomal protein R 100.0 3.6E-50 1.2E-54 349.0 35.2 314 17-361 45-376 (380)
6 4gqb_B Methylosome protein 50; 100.0 7.6E-50 2.6E-54 341.1 34.8 297 40-363 28-334 (344)
7 3frx_A Guanine nucleotide-bind 100.0 1.7E-48 6E-53 330.3 40.4 298 39-361 14-318 (319)
8 2pbi_B Guanine nucleotide-bind 100.0 1.4E-48 4.8E-53 335.5 38.9 284 39-357 61-354 (354)
9 4ery_A WD repeat-containing pr 100.0 7.7E-48 2.6E-52 325.8 39.3 286 40-359 21-311 (312)
10 4g56_B MGC81050 protein; prote 100.0 8.8E-49 3E-53 337.1 33.4 289 40-360 40-343 (357)
11 1erj_A Transcriptional repress 100.0 9E-48 3.1E-52 335.4 37.8 320 17-361 39-390 (393)
12 1nr0_A Actin interacting prote 100.0 7.3E-47 2.5E-51 347.7 44.1 319 18-360 39-522 (611)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-47 5.5E-52 328.0 36.6 298 40-362 13-337 (345)
14 2xzm_R RACK1; ribosome, transl 100.0 1.1E-46 3.7E-51 322.8 40.1 301 40-361 19-341 (343)
15 1nr0_A Actin interacting prote 100.0 1.1E-46 3.9E-51 346.4 39.3 316 13-361 101-568 (611)
16 2ymu_A WD-40 repeat protein; u 100.0 6.5E-46 2.2E-50 340.1 40.4 275 41-357 302-577 (577)
17 2hes_X YDR267CP; beta-propelle 100.0 4.7E-46 1.6E-50 316.9 36.4 294 40-360 12-328 (330)
18 4aow_A Guanine nucleotide-bind 100.0 3.4E-45 1.1E-49 313.2 41.0 301 39-362 35-339 (340)
19 4gqb_B Methylosome protein 50; 100.0 3.9E-45 1.3E-49 312.0 37.5 278 13-309 28-333 (344)
20 1gxr_A ESG1, transducin-like e 100.0 3.5E-44 1.2E-48 306.4 42.3 311 14-359 8-336 (337)
21 2ynn_A Coatomer subunit beta'; 100.0 3.8E-45 1.3E-49 307.8 33.2 251 92-362 8-261 (304)
22 2pm9_A Protein WEB1, protein t 100.0 2.2E-45 7.6E-50 323.1 31.4 327 15-361 42-415 (416)
23 1vyh_C Platelet-activating fac 100.0 1.1E-44 3.9E-49 317.4 34.4 271 12-306 105-410 (410)
24 3ow8_A WD repeat-containing pr 100.0 2.8E-44 9.5E-49 304.5 35.3 242 40-306 78-320 (321)
25 1k8k_C P40, ARP2/3 complex 41 100.0 4.2E-44 1.4E-48 310.2 37.1 297 41-360 7-361 (372)
26 4g56_B MGC81050 protein; prote 100.0 2.6E-44 8.8E-49 309.2 34.4 279 12-309 39-345 (357)
27 3zwl_B Eukaryotic translation 100.0 7.3E-44 2.5E-48 308.1 37.4 289 40-361 30-347 (369)
28 3dm0_A Maltose-binding peripla 100.0 8.3E-44 2.8E-48 332.5 40.1 298 40-360 380-693 (694)
29 2ymu_A WD-40 repeat protein; u 100.0 1E-43 3.5E-48 325.5 39.8 279 41-361 261-540 (577)
30 1r5m_A SIR4-interacting protei 100.0 7.3E-44 2.5E-48 314.0 36.8 281 41-360 107-425 (425)
31 3k26_A Polycomb protein EED; W 100.0 3.1E-44 1.1E-48 310.2 33.0 299 40-360 16-366 (366)
32 1sq9_A Antiviral protein SKI8; 100.0 5E-44 1.7E-48 312.5 33.6 304 39-361 13-396 (397)
33 4e54_B DNA damage-binding prot 100.0 2.7E-44 9.2E-49 317.8 30.1 294 41-363 118-433 (435)
34 1got_B GT-beta; complex (GTP-b 100.0 6.3E-43 2.2E-47 298.9 36.8 272 11-304 51-340 (340)
35 1r5m_A SIR4-interacting protei 100.0 2.9E-43 1E-47 310.1 34.6 315 17-361 24-362 (425)
36 3ei3_B DNA damage-binding prot 100.0 7.8E-43 2.7E-47 303.6 35.5 288 40-360 71-382 (383)
37 3vl1_A 26S proteasome regulato 100.0 3.9E-43 1.3E-47 309.2 33.0 292 43-360 98-419 (420)
38 3dwl_C Actin-related protein 2 100.0 2.7E-44 9.3E-49 312.1 24.5 295 41-358 10-377 (377)
39 2pm9_A Protein WEB1, protein t 100.0 1.4E-43 4.6E-48 311.7 28.1 292 41-362 11-339 (416)
40 3i2n_A WD repeat-containing pr 100.0 1.8E-42 6.1E-47 298.2 33.9 299 40-362 16-355 (357)
41 2pbi_B Guanine nucleotide-bind 100.0 4.5E-42 1.6E-46 295.0 36.1 276 10-304 59-354 (354)
42 3gre_A Serine/threonine-protei 100.0 6.9E-43 2.4E-47 309.2 32.0 313 22-357 47-437 (437)
43 3odt_A Protein DOA1; ubiquitin 100.0 8.9E-42 3E-46 288.5 36.4 279 40-364 16-300 (313)
44 4a11_B DNA excision repair pro 100.0 1.6E-41 5.6E-46 297.4 38.1 321 19-362 24-367 (408)
45 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-41 5E-46 291.0 35.5 254 40-313 59-341 (345)
46 3iz6_a 40S ribosomal protein R 100.0 2.3E-42 7.7E-47 300.0 29.2 284 11-309 62-377 (380)
47 4h5i_A Guanine nucleotide-exch 100.0 6.1E-42 2.1E-46 295.2 31.5 292 42-360 14-343 (365)
48 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-41 4.6E-46 323.7 36.3 192 9-222 11-243 (902)
49 4aez_A CDC20, WD repeat-contai 100.0 6.7E-41 2.3E-45 293.0 35.4 281 45-362 96-382 (401)
50 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-42 8.7E-47 308.8 26.7 326 14-361 179-518 (524)
51 3vl1_A 26S proteasome regulato 100.0 3.5E-42 1.2E-46 303.1 27.1 282 42-360 56-365 (420)
52 1erj_A Transcriptional repress 100.0 1.4E-40 4.7E-45 290.0 36.7 276 13-309 62-391 (393)
53 3dw8_B Serine/threonine-protei 100.0 4.7E-41 1.6E-45 298.3 34.3 307 39-359 25-445 (447)
54 2hes_X YDR267CP; beta-propelle 100.0 5.2E-41 1.8E-45 285.8 32.3 281 13-307 29-328 (330)
55 2pm7_B Protein transport prote 100.0 6.6E-41 2.3E-45 280.9 32.4 251 93-359 5-284 (297)
56 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-40 5E-45 316.6 38.6 328 11-358 72-659 (902)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-39 3.8E-44 289.3 41.1 302 14-361 135-443 (445)
58 4gga_A P55CDC, cell division c 100.0 5.8E-40 2E-44 288.8 38.7 280 44-360 107-395 (420)
59 1gxr_A ESG1, transducin-like e 100.0 2.7E-41 9.3E-46 288.4 29.4 283 41-362 8-298 (337)
60 4ery_A WD repeat-containing pr 100.0 1.8E-40 6.1E-45 280.6 33.9 272 11-306 19-311 (312)
61 3frx_A Guanine nucleotide-bind 100.0 6.2E-40 2.1E-44 277.8 36.0 242 40-308 63-318 (319)
62 2pm7_B Protein transport prote 100.0 1.3E-40 4.3E-45 279.2 31.3 250 40-306 7-284 (297)
63 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-40 1.1E-44 291.8 35.2 276 40-362 131-416 (435)
64 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-40 6.2E-45 329.0 36.6 317 13-361 613-1035(1249)
65 3v7d_B Cell division control p 100.0 3.6E-40 1.2E-44 294.0 34.8 280 40-362 119-423 (464)
66 3v7d_B Cell division control p 100.0 2.2E-39 7.5E-44 289.0 39.1 302 13-358 137-461 (464)
67 1yfq_A Cell cycle arrest prote 100.0 7.9E-40 2.7E-44 280.1 32.9 274 40-352 9-315 (342)
68 1pgu_A Actin interacting prote 100.0 1.2E-39 4.2E-44 300.5 36.6 310 15-360 180-614 (615)
69 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-40 2E-44 312.3 34.8 284 40-360 11-302 (814)
70 2xzm_R RACK1; ribosome, transl 100.0 2.3E-39 7.9E-44 277.3 34.8 272 11-309 42-342 (343)
71 4ggc_A P55CDC, cell division c 100.0 6.6E-39 2.3E-43 271.5 36.9 280 44-360 27-315 (318)
72 1pgu_A Actin interacting prote 100.0 2.4E-39 8.2E-44 298.6 36.6 256 40-314 61-335 (615)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.2E-39 1.8E-43 285.0 36.2 277 40-362 116-393 (445)
74 3bg1_A Protein SEC13 homolog; 100.0 4.8E-40 1.6E-44 278.1 27.3 251 39-306 10-292 (316)
75 3bg1_A Protein SEC13 homolog; 100.0 9.3E-41 3.2E-45 282.5 22.5 252 93-359 9-292 (316)
76 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-39 5.1E-44 278.7 30.2 296 40-362 9-339 (351)
77 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-39 1.3E-43 319.7 36.5 285 40-360 613-913 (1249)
78 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-39 1.8E-43 305.7 34.0 321 11-360 9-386 (814)
79 4aez_A CDC20, WD repeat-contai 100.0 3.2E-38 1.1E-42 276.0 35.0 274 10-313 105-386 (401)
80 3mmy_A MRNA export factor; mRN 100.0 1.2E-38 4.1E-43 275.3 31.2 282 40-358 37-344 (368)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-38 3.6E-43 279.3 29.3 289 44-361 36-343 (402)
82 3jrp_A Fusion protein of prote 100.0 1.8E-38 6E-43 275.4 29.7 251 40-308 9-288 (379)
83 4aow_A Guanine nucleotide-bind 100.0 2.5E-37 8.6E-42 264.3 36.0 274 11-309 34-339 (340)
84 4gga_A P55CDC, cell division c 100.0 1.8E-37 6E-42 273.0 35.1 279 10-313 117-401 (420)
85 1sq9_A Antiviral protein SKI8; 100.0 5.9E-38 2E-42 274.1 31.8 276 12-309 30-397 (397)
86 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-39 9.2E-44 289.3 22.4 265 41-363 132-431 (524)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-37 5.3E-42 269.0 32.4 246 94-360 5-274 (372)
88 3jrp_A Fusion protein of prote 100.0 1.3E-37 4.4E-42 270.0 31.4 254 92-360 6-287 (379)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-37 2.5E-41 271.5 36.8 296 42-360 4-391 (450)
90 2xyi_A Probable histone-bindin 100.0 5.2E-37 1.8E-41 270.7 34.6 262 91-361 122-411 (430)
91 3k26_A Polycomb protein EED; W 100.0 1.6E-38 5.4E-43 274.4 24.2 272 11-306 37-365 (366)
92 3ei3_B DNA damage-binding prot 100.0 3.2E-37 1.1E-41 268.2 31.5 243 40-307 116-382 (383)
93 4a11_B DNA excision repair pro 100.0 8E-37 2.7E-41 267.6 34.1 315 13-360 41-405 (408)
94 3i2n_A WD repeat-containing pr 100.0 1.8E-37 6.1E-42 267.0 28.9 266 17-310 43-356 (357)
95 3vu4_A KMHSV2; beta-propeller 100.0 7.4E-37 2.5E-41 262.7 31.8 284 40-361 17-337 (355)
96 3zwl_B Eukaryotic translation 100.0 1.5E-36 5E-41 262.3 33.4 276 11-312 28-351 (369)
97 3dm0_A Maltose-binding peripla 100.0 7.2E-37 2.5E-41 285.7 33.3 270 13-306 400-692 (694)
98 3gre_A Serine/threonine-protei 100.0 4.9E-37 1.7E-41 271.7 30.1 283 13-304 61-437 (437)
99 3dwl_C Actin-related protein 2 100.0 2.5E-38 8.5E-43 274.6 21.3 245 95-359 9-280 (377)
100 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-36 1.1E-40 254.3 33.3 244 41-314 58-303 (313)
101 4e54_B DNA damage-binding prot 100.0 2.3E-37 7.7E-42 273.5 26.5 251 40-311 162-434 (435)
102 4h5i_A Guanine nucleotide-exch 100.0 8.7E-37 3E-41 263.1 28.8 252 40-308 71-344 (365)
103 2xyi_A Probable histone-bindin 100.0 1.6E-36 5.4E-41 267.6 30.7 260 39-308 125-411 (430)
104 4ggc_A P55CDC, cell division c 100.0 9.9E-36 3.4E-40 252.0 34.0 274 11-309 38-317 (318)
105 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-37 8.3E-42 270.6 23.5 294 13-348 13-349 (588)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-36 3.9E-41 266.3 27.2 263 41-359 14-296 (588)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 9.4E-36 3.2E-40 260.6 33.2 280 14-311 53-346 (402)
108 4gq1_A NUP37; propeller, trans 100.0 1.1E-36 3.9E-41 265.2 24.4 299 42-360 15-389 (393)
109 3dw8_B Serine/threonine-protei 100.0 1.1E-36 3.7E-41 270.2 24.6 245 96-362 27-375 (447)
110 3lrv_A PRE-mRNA-splicing facto 100.0 5.4E-36 1.8E-40 256.4 28.1 273 49-359 43-332 (343)
111 3bws_A Protein LP49; two-domai 100.0 7.8E-35 2.7E-39 257.3 35.7 285 42-360 122-432 (433)
112 3jro_A Fusion protein of prote 100.0 6.2E-37 2.1E-41 287.8 22.3 250 40-307 7-285 (753)
113 1p22_A F-BOX/WD-repeat protein 100.0 3E-35 1E-39 260.0 30.6 259 14-312 149-419 (435)
114 3jro_A Fusion protein of prote 100.0 4.2E-36 1.4E-40 282.1 26.0 254 92-360 4-285 (753)
115 1yfq_A Cell cycle arrest prote 100.0 4.7E-35 1.6E-39 250.5 26.1 252 94-362 8-284 (342)
116 1l0q_A Surface layer protein; 100.0 2.5E-33 8.4E-38 244.3 35.2 268 55-362 3-277 (391)
117 1l0q_A Surface layer protein; 100.0 2E-32 6.7E-37 238.6 40.6 317 13-362 7-344 (391)
118 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-33 9.2E-38 239.8 28.3 292 12-314 8-344 (351)
119 3mmy_A MRNA export factor; mRN 100.0 2.5E-33 8.6E-38 241.9 27.4 270 12-306 36-345 (368)
120 4gq1_A NUP37; propeller, trans 100.0 5E-34 1.7E-38 248.5 21.4 248 41-306 88-388 (393)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.6E-32 3E-36 238.8 35.4 245 40-308 100-392 (450)
122 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-32 9.4E-37 234.2 29.3 237 94-361 16-272 (355)
123 1nir_A Nitrite reductase; hemo 100.0 1.5E-31 5.3E-36 241.0 35.0 318 14-363 155-517 (543)
124 3lrv_A PRE-mRNA-splicing facto 100.0 3.7E-32 1.3E-36 232.6 27.4 269 11-306 51-332 (343)
125 2w18_A PALB2, fancn, partner a 100.0 6.7E-32 2.3E-36 222.3 26.6 265 11-305 56-355 (356)
126 2w18_A PALB2, fancn, partner a 100.0 3.2E-31 1.1E-35 218.3 30.4 298 24-358 21-355 (356)
127 3bws_A Protein LP49; two-domai 100.0 7.6E-30 2.6E-34 225.3 31.9 263 16-306 142-431 (433)
128 1nir_A Nitrite reductase; hemo 100.0 1.7E-28 5.7E-33 221.2 31.1 280 49-362 144-460 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.5E-28 1.2E-32 212.9 27.6 278 19-337 94-408 (415)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.9E-28 9.7E-33 213.4 24.3 284 42-362 62-389 (415)
131 2ojh_A Uncharacterized protein 100.0 5.2E-27 1.8E-31 196.1 25.1 260 59-351 17-293 (297)
132 3u4y_A Uncharacterized protein 100.0 1.4E-25 4.7E-30 190.9 33.1 285 49-362 4-306 (331)
133 1ri6_A Putative isomerase YBHE 100.0 9.5E-26 3.2E-30 192.6 31.9 275 56-359 7-307 (343)
134 3vgz_A Uncharacterized protein 100.0 3.5E-25 1.2E-29 190.0 34.7 272 41-350 39-334 (353)
135 2ecf_A Dipeptidyl peptidase IV 100.0 3.7E-26 1.3E-30 215.2 29.3 290 42-360 36-413 (741)
136 2ecf_A Dipeptidyl peptidase IV 100.0 6.1E-26 2.1E-30 213.7 29.4 280 44-361 110-460 (741)
137 1ri6_A Putative isomerase YBHE 99.9 2.5E-24 8.6E-29 183.8 32.6 290 15-336 12-332 (343)
138 1pby_B Quinohemoprotein amine 99.9 4E-25 1.4E-29 188.3 26.4 265 55-362 2-312 (337)
139 2ojh_A Uncharacterized protein 99.9 2.7E-25 9.2E-30 185.6 24.3 256 15-298 19-293 (297)
140 1k32_A Tricorn protease; prote 99.9 4E-25 1.4E-29 215.1 29.0 321 13-362 50-463 (1045)
141 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-25 9.1E-30 208.2 26.1 281 43-362 82-437 (706)
142 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-25 4.8E-30 210.7 23.5 288 43-360 17-393 (723)
143 3u4y_A Uncharacterized protein 99.9 6.9E-24 2.4E-28 180.3 31.7 270 12-310 14-307 (331)
144 3o4h_A Acylamino-acid-releasin 99.9 1.6E-24 5.6E-29 198.3 24.8 274 41-360 20-315 (582)
145 1pby_B Quinohemoprotein amine 99.9 2.5E-23 8.5E-28 177.1 29.3 277 13-317 6-320 (337)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-22 3.6E-27 178.7 33.5 211 41-264 35-279 (434)
147 3vgz_A Uncharacterized protein 99.9 4E-23 1.4E-27 177.1 29.6 242 98-362 41-305 (353)
148 3hfq_A Uncharacterized protein 99.9 5.9E-23 2E-27 175.8 29.9 273 17-311 17-323 (347)
149 1k32_A Tricorn protease; prote 99.9 1.1E-23 3.9E-28 204.9 27.5 277 40-359 201-501 (1045)
150 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-23 5.9E-28 196.5 27.2 301 15-348 34-428 (723)
151 3hfq_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 173.8 29.3 271 62-359 14-316 (347)
152 2z3z_A Dipeptidyl aminopeptida 99.9 4.4E-23 1.5E-27 193.2 27.3 286 44-362 27-393 (706)
153 1jmx_B Amine dehydrogenase; ox 99.9 4.1E-23 1.4E-27 176.7 23.9 237 103-362 5-327 (349)
154 3scy_A Hypothetical bacterial 99.9 2.7E-21 9.1E-26 166.4 33.4 288 17-335 28-360 (361)
155 3scy_A Hypothetical bacterial 99.9 2E-21 6.9E-26 167.2 32.5 278 52-359 11-336 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-22 8.7E-27 176.3 24.9 205 99-308 38-279 (434)
157 1jmx_B Amine dehydrogenase; ox 99.9 2.9E-22 9.9E-27 171.4 22.8 240 47-316 4-334 (349)
158 1z68_A Fibroblast activation p 99.9 1.4E-22 4.7E-27 190.2 20.2 278 47-360 20-391 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.9E-20 6.6E-25 161.2 31.4 272 17-308 15-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.9 3E-22 1E-26 183.3 20.9 233 98-358 22-274 (582)
161 1z68_A Fibroblast activation p 99.9 6.2E-22 2.1E-26 185.8 21.7 310 16-362 34-445 (719)
162 3pe7_A Oligogalacturonate lyas 99.9 1.3E-20 4.3E-25 163.8 27.7 282 48-359 41-381 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.3E-20 2.5E-24 157.6 30.3 251 99-361 41-342 (365)
164 3fvz_A Peptidyl-glycine alpha- 99.9 7.9E-19 2.7E-23 148.8 31.8 247 98-362 24-324 (329)
165 1q7f_A NHL, brain tumor CG1071 99.9 1.4E-18 4.6E-23 144.5 32.2 250 40-309 27-282 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.9 7.4E-20 2.5E-24 171.9 26.3 287 43-362 17-355 (740)
167 2oiz_A Aromatic amine dehydrog 99.9 1.2E-18 4.1E-23 149.4 28.5 289 17-342 30-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.9 1.1E-19 3.8E-24 158.2 22.4 296 23-359 15-381 (396)
169 1qks_A Cytochrome CD1 nitrite 99.8 2.7E-17 9.3E-22 148.0 36.2 317 16-363 175-541 (567)
170 2oiz_A Aromatic amine dehydrog 99.8 1.7E-18 5.8E-23 148.4 27.3 269 53-361 14-335 (361)
171 1q7f_A NHL, brain tumor CG1071 99.8 3E-17 1E-21 136.3 32.0 238 98-360 30-280 (286)
172 3azo_A Aminopeptidase; POP fam 99.8 4.9E-18 1.7E-22 157.8 29.6 283 41-361 22-370 (662)
173 3fvz_A Peptidyl-glycine alpha- 99.8 4E-17 1.4E-21 138.3 32.1 245 42-307 23-322 (329)
174 2dg1_A DRP35, lactonase; beta 99.8 1.3E-17 4.4E-22 141.7 28.2 275 42-350 5-300 (333)
175 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-17 5.6E-22 156.0 30.9 313 17-360 35-449 (740)
176 2z2n_A Virginiamycin B lyase; 99.8 2.6E-15 8.8E-20 125.3 36.6 282 41-363 13-298 (299)
177 2xdw_A Prolyl endopeptidase; a 99.8 1.4E-16 4.8E-21 149.1 30.0 242 99-362 126-416 (710)
178 1qks_A Cytochrome CD1 nitrite 99.8 9.7E-16 3.3E-20 137.9 33.6 278 52-361 165-478 (567)
179 2bkl_A Prolyl endopeptidase; m 99.8 9.7E-17 3.3E-21 149.7 28.0 286 51-362 76-399 (695)
180 3e5z_A Putative gluconolactona 99.8 3.4E-16 1.2E-20 130.6 28.5 238 97-364 27-290 (296)
181 3azo_A Aminopeptidase; POP fam 99.8 1.5E-17 5.1E-22 154.6 22.1 257 93-359 19-322 (662)
182 2gop_A Trilobed protease; beta 99.8 3E-16 1E-20 134.0 27.4 260 42-359 14-330 (347)
183 2xdw_A Prolyl endopeptidase; a 99.8 3.4E-16 1.1E-20 146.5 29.1 247 41-309 123-416 (710)
184 3pe7_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 142.0 19.9 239 103-362 41-331 (388)
185 2bkl_A Prolyl endopeptidase; m 99.8 2E-16 7E-21 147.5 25.9 245 41-310 119-400 (695)
186 2dg1_A DRP35, lactonase; beta 99.8 7.6E-15 2.6E-19 124.6 32.9 232 41-297 43-300 (333)
187 1rwi_B Serine/threonine-protei 99.8 1.1E-15 3.7E-20 125.7 26.0 240 99-362 25-266 (270)
188 3no2_A Uncharacterized protein 99.8 1.7E-15 5.8E-20 124.5 26.7 236 53-315 4-260 (276)
189 1rwi_B Serine/threonine-protei 99.8 1.5E-15 5.1E-20 124.9 26.2 240 44-309 25-266 (270)
190 3no2_A Uncharacterized protein 99.7 2.2E-15 7.5E-20 123.8 26.7 218 111-347 5-230 (276)
191 3dsm_A Uncharacterized protein 99.7 7.6E-15 2.6E-19 124.1 29.6 270 16-316 15-310 (328)
192 1yr2_A Prolyl oligopeptidase; 99.7 1.9E-15 6.6E-20 141.9 28.4 286 51-361 115-442 (741)
193 2gop_A Trilobed protease; beta 99.7 2.1E-15 7.1E-20 128.8 25.0 242 17-309 42-332 (347)
194 3e5z_A Putative gluconolactona 99.7 2.9E-15 9.8E-20 125.0 25.1 238 41-309 26-288 (296)
195 2qc5_A Streptogramin B lactona 99.7 1.3E-13 4.4E-18 115.0 35.2 277 42-359 19-299 (300)
196 3dsm_A Uncharacterized protein 99.7 2E-15 6.7E-20 127.7 23.7 269 62-361 15-303 (328)
197 2mad_H Methylamine dehydrogena 99.7 5.6E-14 1.9E-18 120.5 32.5 273 49-363 27-353 (373)
198 3sjl_D Methylamine dehydrogena 99.7 2.4E-14 8.3E-19 121.2 27.1 277 47-363 37-366 (386)
199 2z2n_A Virginiamycin B lyase; 99.7 3.2E-13 1.1E-17 112.5 32.7 237 98-359 15-254 (299)
200 3c5m_A Oligogalacturonate lyas 99.7 2.1E-15 7E-20 131.1 17.7 238 99-363 37-332 (396)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.5E-13 5.1E-18 115.5 27.1 244 43-307 18-299 (314)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.2E-13 1.8E-17 112.1 27.9 238 99-360 19-299 (314)
203 3hrp_A Uncharacterized protein 99.6 1.2E-12 4.2E-17 113.7 29.8 237 42-305 130-408 (409)
204 2mad_H Methylamine dehydrogena 99.6 4.2E-12 1.4E-16 108.9 32.6 268 19-313 48-356 (373)
205 3c75_H MADH, methylamine dehyd 99.6 2E-13 6.9E-18 117.7 24.3 272 52-363 82-405 (426)
206 1yr2_A Prolyl oligopeptidase; 99.6 1.2E-13 4.2E-18 129.7 23.7 245 41-310 161-444 (741)
207 3sjl_D Methylamine dehydrogena 99.6 1.7E-12 5.7E-17 110.1 27.6 274 18-316 59-372 (386)
208 2qc5_A Streptogramin B lactona 99.6 1E-11 3.5E-16 103.3 32.3 236 98-359 20-259 (300)
209 3iuj_A Prolyl endopeptidase; h 99.6 2.3E-13 7.7E-18 126.8 24.1 244 98-362 129-407 (693)
210 3g4e_A Regucalcin; six bladed 99.6 7.7E-12 2.6E-16 104.1 29.0 221 100-346 15-258 (297)
211 3hrp_A Uncharacterized protein 99.6 7E-12 2.4E-16 109.0 29.7 244 98-359 131-409 (409)
212 1xip_A Nucleoporin NUP159; bet 99.6 2.3E-13 8E-18 115.7 18.0 183 42-250 37-231 (388)
213 3iuj_A Prolyl endopeptidase; h 99.6 1.1E-12 3.7E-17 122.2 23.9 244 41-311 127-409 (693)
214 3g4e_A Regucalcin; six bladed 99.5 1.7E-11 5.8E-16 102.0 27.1 226 44-295 14-260 (297)
215 2qe8_A Uncharacterized protein 99.5 5.4E-12 1.8E-16 107.3 24.4 269 43-351 17-312 (343)
216 1xip_A Nucleoporin NUP159; bet 99.5 7.5E-13 2.6E-17 112.6 18.9 180 144-346 39-230 (388)
217 3c75_H MADH, methylamine dehyd 99.5 1E-11 3.4E-16 107.2 24.9 271 18-314 99-409 (426)
218 3dr2_A Exported gluconolactona 99.5 3.7E-11 1.3E-15 100.4 26.7 224 98-352 45-299 (305)
219 2ghs_A AGR_C_1268P; regucalcin 99.5 7.7E-11 2.6E-15 99.4 28.5 223 100-350 51-293 (326)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.3E-10 7.9E-15 98.6 32.0 296 16-357 61-375 (376)
221 1kb0_A Quinohemoprotein alcoho 99.5 2.6E-10 9E-15 105.4 31.8 280 53-360 127-567 (677)
222 2ghs_A AGR_C_1268P; regucalcin 99.5 2.6E-10 8.9E-15 96.2 28.4 221 45-294 51-289 (326)
223 1mda_H Methylamine dehydrogena 99.4 1.1E-11 3.6E-16 105.3 19.4 252 65-362 47-348 (368)
224 1yiq_A Quinohemoprotein alcoho 99.4 6.2E-11 2.1E-15 109.8 26.2 285 54-363 70-508 (689)
225 3dr2_A Exported gluconolactona 99.4 1.4E-10 4.8E-15 96.9 24.8 224 42-298 44-298 (305)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.4 8.1E-10 2.8E-14 95.2 29.8 275 54-363 53-340 (376)
227 1kb0_A Quinohemoprotein alcoho 99.4 2.2E-10 7.5E-15 105.9 26.3 286 54-363 77-510 (677)
228 1yiq_A Quinohemoprotein alcoho 99.4 5.6E-10 1.9E-14 103.4 28.3 264 54-344 121-532 (689)
229 1mda_H Methylamine dehydrogena 99.4 4E-11 1.4E-15 101.7 18.4 267 19-316 47-355 (368)
230 1npe_A Nidogen, entactin; glyc 99.4 2E-08 7E-13 81.9 33.5 255 54-336 1-260 (267)
231 3hxj_A Pyrrolo-quinoline quino 99.4 5E-10 1.7E-14 94.5 24.2 290 14-361 36-325 (330)
232 2hz6_A Endoplasmic reticulum t 99.3 1.4E-12 4.9E-17 111.8 7.2 187 111-315 9-200 (369)
233 2hz6_A Endoplasmic reticulum t 99.3 2.7E-12 9.3E-17 110.1 6.9 258 53-359 8-278 (369)
234 1kv9_A Type II quinohemoprotei 99.3 2.5E-09 8.4E-14 98.9 26.1 286 54-363 66-491 (668)
235 2ece_A 462AA long hypothetical 99.2 1.1E-08 3.7E-13 87.5 25.4 205 149-359 88-351 (462)
236 1fwx_A Nitrous oxide reductase 99.2 3E-09 1E-13 94.2 22.7 290 56-363 17-434 (595)
237 2iwa_A Glutamine cyclotransfer 99.2 8.7E-09 3E-13 82.8 23.5 196 100-309 23-239 (266)
238 2iwa_A Glutamine cyclotransfer 99.2 1.4E-08 4.6E-13 81.6 24.6 215 133-361 11-238 (266)
239 2qe8_A Uncharacterized protein 99.2 5E-10 1.7E-14 95.2 16.8 233 99-358 18-276 (343)
240 3nol_A Glutamine cyclotransfer 99.2 1.4E-08 4.6E-13 80.6 22.4 201 133-349 33-244 (262)
241 2ece_A 462AA long hypothetical 99.2 6.9E-08 2.4E-12 82.6 27.8 233 52-295 93-399 (462)
242 3nok_A Glutaminyl cyclase; bet 99.2 1.7E-08 5.9E-13 80.0 21.7 198 133-347 45-253 (268)
243 3mbr_X Glutamine cyclotransfer 99.2 6.7E-08 2.3E-12 76.0 24.9 210 133-359 11-232 (243)
244 1npe_A Nidogen, entactin; glyc 99.2 2.2E-07 7.7E-12 75.7 29.4 223 43-288 36-262 (267)
245 1fwx_A Nitrous oxide reductase 99.2 2.6E-09 8.9E-14 94.5 18.6 238 52-309 99-433 (595)
246 3hxj_A Pyrrolo-quinoline quino 99.2 1.8E-08 6E-13 85.0 23.0 218 54-307 107-324 (330)
247 1kv9_A Type II quinohemoprotei 99.1 1.1E-07 3.7E-12 88.0 29.5 245 54-317 117-498 (668)
248 3nol_A Glutamine cyclotransfer 99.1 8.3E-08 2.8E-12 76.1 23.2 181 100-296 45-244 (262)
249 1k3i_A Galactose oxidase precu 99.1 3.9E-08 1.3E-12 91.0 24.7 273 47-349 190-530 (656)
250 2fp8_A Strictosidine synthase; 99.1 2.3E-07 7.8E-12 77.9 26.1 240 100-361 21-314 (322)
251 1w6s_A Methanol dehydrogenase 99.1 9.2E-07 3.2E-11 80.1 31.5 251 48-317 111-513 (599)
252 2ad6_A Methanol dehydrogenase 99.1 2.1E-07 7.2E-12 84.3 27.3 286 54-363 62-497 (571)
253 4a2l_A BT_4663, two-component 99.1 2.7E-06 9.4E-11 80.6 35.8 288 42-361 214-527 (795)
254 4a2l_A BT_4663, two-component 99.0 2.6E-06 9E-11 80.7 35.3 279 45-360 175-480 (795)
255 2ad6_A Methanol dehydrogenase 99.0 3.1E-07 1.1E-11 83.2 27.6 245 54-317 115-504 (571)
256 2fp8_A Strictosidine synthase; 99.0 5.1E-07 1.8E-11 75.8 26.7 246 44-307 20-313 (322)
257 3v65_B Low-density lipoprotein 99.0 3.7E-06 1.3E-10 72.3 32.2 245 44-314 78-325 (386)
258 3nok_A Glutaminyl cyclase; bet 99.0 1.6E-07 5.6E-12 74.5 21.3 158 100-272 57-219 (268)
259 3v64_C Agrin; beta propeller, 99.0 4.9E-06 1.7E-10 70.5 32.2 248 41-314 32-282 (349)
260 3mbr_X Glutamine cyclotransfer 99.0 6E-07 2.1E-11 70.6 24.2 183 98-296 21-223 (243)
261 1w6s_A Methanol dehydrogenase 99.0 3.8E-07 1.3E-11 82.6 25.2 286 54-363 62-506 (599)
262 3v64_C Agrin; beta propeller, 99.0 8.7E-06 3E-10 69.0 31.7 210 42-271 72-283 (349)
263 3v65_B Low-density lipoprotein 99.0 3.5E-06 1.2E-10 72.5 29.4 211 42-272 115-327 (386)
264 3v9f_A Two-component system se 98.9 1E-05 3.5E-10 76.5 34.4 294 42-361 257-569 (781)
265 1flg_A Protein (quinoprotein e 98.9 2.3E-06 7.9E-11 77.6 27.6 283 56-363 70-519 (582)
266 2p4o_A Hypothetical protein; p 98.9 5.4E-06 1.8E-10 69.0 28.0 228 43-296 32-277 (306)
267 1flg_A Protein (quinoprotein e 98.9 5.9E-06 2E-10 74.9 29.8 249 54-317 117-526 (582)
268 3sov_A LRP-6, low-density lipo 98.9 1.1E-05 3.7E-10 67.3 28.4 236 13-272 8-247 (318)
269 3p5b_L Low density lipoprotein 98.9 3.2E-05 1.1E-09 66.8 34.1 216 42-273 111-330 (400)
270 2p4o_A Hypothetical protein; p 98.9 1.4E-05 4.8E-10 66.4 28.8 225 99-348 33-276 (306)
271 2xe4_A Oligopeptidase B; hydro 98.9 1.4E-06 4.9E-11 81.8 25.0 196 99-304 175-395 (751)
272 1ijq_A LDL receptor, low-densi 98.8 2.7E-05 9.3E-10 65.0 30.8 232 56-314 3-245 (316)
273 3v9f_A Two-component system se 98.8 1.9E-05 6.5E-10 74.7 32.6 287 41-360 311-611 (781)
274 1ijq_A LDL receptor, low-densi 98.8 3.2E-05 1.1E-09 64.6 33.5 233 18-271 10-246 (316)
275 3qqz_A Putative uncharacterize 98.8 2E-05 6.9E-10 62.9 26.5 199 98-304 27-250 (255)
276 3sov_A LRP-6, low-density lipo 98.8 4.6E-05 1.6E-09 63.5 29.0 236 56-314 6-245 (318)
277 3p5b_L Low density lipoprotein 98.7 8.5E-05 2.9E-09 64.1 33.0 234 56-314 85-327 (400)
278 2xe4_A Oligopeptidase B; hydro 98.7 8.3E-06 2.8E-10 76.6 25.6 199 44-261 175-398 (751)
279 3m0c_C LDL receptor, low-densi 98.7 0.00015 5.1E-09 67.9 33.1 214 42-271 423-640 (791)
280 3qqz_A Putative uncharacterize 98.7 5.9E-05 2E-09 60.2 27.0 209 137-358 22-251 (255)
281 3tc9_A Hypothetical hydrolase; 98.7 1.5E-05 5.2E-10 69.5 24.2 156 44-221 138-301 (430)
282 1k3i_A Galactose oxidase precu 98.7 2.4E-06 8.1E-11 79.1 20.2 244 101-361 189-498 (656)
283 4hw6_A Hypothetical protein, I 98.7 3E-05 1E-09 67.6 26.0 202 43-265 139-375 (433)
284 3tc9_A Hypothetical hydrolase; 98.7 4.2E-05 1.4E-09 66.7 26.8 248 99-359 138-429 (430)
285 3m0c_C LDL receptor, low-densi 98.6 0.00019 6.4E-09 67.3 30.2 209 98-314 424-639 (791)
286 3amr_A 3-phytase; beta-propell 98.6 0.00019 6.4E-09 59.6 26.9 243 111-359 40-328 (355)
287 4hw6_A Hypothetical protein, I 98.5 0.00017 5.9E-09 62.9 27.2 247 99-359 140-432 (433)
288 1n7d_A LDL receptor, low-densi 98.5 6.3E-06 2.2E-10 76.5 17.8 214 43-272 406-623 (699)
289 3kya_A Putative phosphatase; s 98.4 0.00047 1.6E-08 60.5 27.0 249 44-311 140-479 (496)
290 3s94_A LRP-6, low-density lipo 98.4 0.00027 9.4E-09 64.5 26.0 238 8-267 8-247 (619)
291 1n7d_A LDL receptor, low-densi 98.4 5.7E-06 1.9E-10 76.8 14.4 205 99-314 407-621 (699)
292 3ei3_A DNA damage-binding prot 98.4 0.0023 7.8E-08 62.7 36.6 287 42-362 553-915 (1158)
293 3kya_A Putative phosphatase; s 98.3 0.0014 4.8E-08 57.5 29.5 254 99-361 140-476 (496)
294 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0019 6.6E-08 59.0 30.9 232 56-312 8-242 (628)
295 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0023 7.8E-08 58.6 32.2 204 42-267 36-241 (628)
296 3s94_A LRP-6, low-density lipo 98.3 0.0022 7.4E-08 58.7 28.0 203 99-311 41-247 (619)
297 2xbg_A YCF48-like protein; pho 98.2 0.0018 6.1E-08 54.2 33.2 275 42-357 35-319 (327)
298 2xzh_A Clathrin heavy chain 1; 98.2 0.0016 5.6E-08 53.1 29.8 259 64-360 49-332 (365)
299 2vpj_A Kelch-like protein 12; 98.2 0.0015 5E-08 53.9 23.3 226 111-360 15-278 (301)
300 2xn4_A Kelch-like protein 2; s 98.0 0.0036 1.2E-07 51.6 24.7 226 111-360 16-276 (302)
301 3ii7_A Kelch-like protein 7; p 98.0 0.0039 1.3E-07 51.5 23.0 227 111-361 12-273 (306)
302 2xzh_A Clathrin heavy chain 1; 98.0 0.0043 1.5E-07 50.7 27.1 238 47-310 71-335 (365)
303 3ei3_A DNA damage-binding prot 98.0 0.016 5.3E-07 57.0 35.8 176 166-360 808-999 (1158)
304 2vpj_A Kelch-like protein 12; 98.0 0.0047 1.6E-07 50.9 22.6 188 111-309 63-280 (301)
305 3amr_A 3-phytase; beta-propell 97.9 0.0059 2E-07 50.7 22.5 186 157-359 42-262 (355)
306 1bpo_A Protein (clathrin); cla 97.9 0.0084 2.9E-07 51.1 30.2 260 63-360 47-331 (494)
307 2p9w_A MAL S 1 allergenic prot 97.9 0.0077 2.6E-07 49.6 23.2 156 144-307 14-215 (334)
308 1zgk_A Kelch-like ECH-associat 97.8 0.0095 3.3E-07 49.2 22.5 227 111-361 25-288 (308)
309 2xn4_A Kelch-like protein 2; s 97.7 0.011 3.9E-07 48.6 21.0 186 111-309 62-278 (302)
310 4asc_A Kelch repeat and BTB do 97.7 0.015 5.2E-07 48.1 21.4 183 113-310 7-224 (315)
311 2ism_A Putative oxidoreductase 97.7 0.019 6.4E-07 48.5 25.0 232 43-294 31-332 (352)
312 3ii7_A Kelch-like protein 7; p 97.7 0.017 5.8E-07 47.6 21.6 187 111-310 56-275 (306)
313 1bpo_A Protein (clathrin); cla 97.6 0.024 8.2E-07 48.4 28.8 238 47-310 70-334 (494)
314 2p9w_A MAL S 1 allergenic prot 97.6 0.02 6.9E-07 47.2 25.1 201 100-307 15-265 (334)
315 1zgk_A Kelch-like ECH-associat 97.6 0.016 5.5E-07 47.8 19.9 187 111-310 71-290 (308)
316 2ism_A Putative oxidoreductase 97.6 0.026 8.8E-07 47.6 27.0 231 99-348 32-333 (352)
317 2xbg_A YCF48-like protein; pho 97.6 0.025 8.5E-07 47.2 28.1 228 98-353 36-272 (327)
318 3das_A Putative oxidoreductase 97.5 0.03 1E-06 46.8 26.5 239 42-295 31-326 (347)
319 2woz_A Kelch repeat and BTB do 97.4 0.036 1.2E-06 45.9 23.1 183 112-309 17-233 (318)
320 2be1_A Serine/threonine-protei 97.4 0.0016 5.5E-08 54.2 11.4 195 111-312 10-236 (339)
321 3a9g_A Putative uncharacterize 97.4 0.044 1.5E-06 46.3 24.3 233 43-295 29-330 (354)
322 2uvk_A YJHT; unknown function, 97.4 0.039 1.3E-06 46.5 20.1 231 111-363 20-345 (357)
323 3ott_A Two-component system se 97.4 0.1 3.5E-06 49.1 30.3 269 42-351 21-299 (758)
324 2g8s_A Glucose/sorbosone dehyd 97.3 0.064 2.2E-06 45.2 24.8 240 44-299 19-346 (353)
325 3a9g_A Putative uncharacterize 97.2 0.072 2.5E-06 44.9 27.9 233 99-348 30-330 (354)
326 3pbp_A Nucleoporin NUP82; beta 97.2 0.08 2.7E-06 45.2 19.3 114 99-217 67-208 (452)
327 2woz_A Kelch repeat and BTB do 97.1 0.089 3E-06 43.5 20.2 187 111-310 57-290 (318)
328 4asc_A Kelch repeat and BTB do 97.1 0.097 3.3E-06 43.2 23.5 186 111-309 46-279 (315)
329 2g8s_A Glucose/sorbosone dehyd 97.0 0.12 4E-06 43.6 26.5 243 99-359 19-351 (353)
330 1xi4_A Clathrin heavy chain; a 97.0 0.14 4.7E-06 50.7 20.6 226 64-316 48-298 (1630)
331 3sre_A PON1, serum paraoxonase 97.0 0.13 4.5E-06 43.2 28.2 212 46-271 53-308 (355)
332 3pbp_A Nucleoporin NUP82; beta 96.9 0.18 6E-06 43.1 20.6 145 111-259 32-208 (452)
333 1xi4_A Clathrin heavy chain; a 96.8 0.14 4.9E-06 50.6 19.2 238 47-310 70-334 (1630)
334 2uvk_A YJHT; unknown function, 96.8 0.19 6.5E-06 42.3 20.5 142 165-314 168-349 (357)
335 2be1_A Serine/threonine-protei 96.7 0.0022 7.4E-08 53.4 5.9 112 158-273 13-140 (339)
336 2zwa_A Leucine carboxyl methyl 96.3 0.59 2E-05 43.4 19.9 203 52-266 396-638 (695)
337 3das_A Putative oxidoreductase 96.3 0.39 1.3E-05 40.1 31.1 234 99-348 33-326 (347)
338 1tl2_A L10, protein (tachylect 96.3 0.031 1.1E-06 43.0 9.1 150 43-215 41-204 (236)
339 1tl2_A L10, protein (tachylect 96.1 0.32 1.1E-05 37.4 16.2 137 111-259 4-159 (236)
340 1cru_A Protein (soluble quinop 96.0 0.68 2.3E-05 40.4 26.2 115 43-162 27-163 (454)
341 2zwa_A Leucine carboxyl methyl 95.7 1 3.6E-05 41.8 18.5 193 111-311 398-639 (695)
342 3ott_A Two-component system se 95.6 1.5 5.3E-05 41.1 32.7 281 42-359 145-447 (758)
343 3sre_A PON1, serum paraoxonase 95.4 1 3.6E-05 37.7 29.6 186 99-295 51-285 (355)
344 3s25_A Hypothetical 7-bladed b 94.3 1.8 6.1E-05 35.4 20.8 172 111-309 25-218 (302)
345 1cru_A Protein (soluble quinop 93.9 3 0.0001 36.4 28.4 104 99-207 28-160 (454)
346 2wg3_C Hedgehog-interacting pr 93.6 3.4 0.00012 36.1 26.3 105 99-208 15-156 (463)
347 3sbq_A Nitrous-oxide reductase 93.3 1.3 4.3E-05 39.4 11.7 104 144-251 324-453 (638)
348 3sbq_A Nitrous-oxide reductase 93.0 4.7 0.00016 36.0 23.3 94 113-210 72-196 (638)
349 4hvt_A Ritya.17583.B, post-pro 91.2 9.4 0.00032 35.5 24.0 248 44-306 130-429 (711)
350 3qhy_B Beta-lactamase inhibito 90.9 5.3 0.00018 32.2 20.0 221 99-359 25-245 (282)
351 3qhy_B Beta-lactamase inhibito 90.5 5.9 0.0002 31.9 20.7 224 42-307 23-246 (282)
352 4gq2_M Nucleoporin NUP120; bet 88.9 10 0.00035 36.6 14.5 39 279-317 238-276 (950)
353 3s25_A Hypothetical 7-bladed b 88.2 9.3 0.00032 31.1 26.1 174 104-306 59-254 (302)
354 2wg3_C Hedgehog-interacting pr 86.7 16 0.00053 32.0 27.7 118 44-162 15-158 (463)
355 3f7f_A Nucleoporin NUP120; nuc 86.1 18 0.00061 33.4 13.4 69 235-308 223-306 (729)
356 1suu_A DNA gyrase subunit A; t 81.4 21 0.0007 29.2 22.0 193 152-361 6-232 (312)
357 4gq2_M Nucleoporin NUP120; bet 79.7 46 0.0016 32.2 14.8 39 98-138 236-274 (950)
358 4hvt_A Ritya.17583.B, post-pro 78.7 42 0.0014 31.2 22.7 204 100-309 131-383 (711)
359 3b7f_A Glycosyl hydrolase, BNR 75.4 36 0.0012 28.7 29.0 153 98-259 55-258 (394)
360 3zwu_A Alkaline phosphatase PH 74.1 14 0.00049 33.3 8.5 59 100-160 478-548 (592)
361 4fhn_B Nucleoporin NUP120; pro 67.9 16 0.00055 36.2 8.2 34 284-317 245-278 (1139)
362 4fhn_B Nucleoporin NUP120; pro 65.2 18 0.00063 35.8 8.0 38 99-138 239-276 (1139)
363 4a9v_A PHOX; hydrolase, beta-p 65.1 42 0.0014 30.2 9.3 64 98-163 476-551 (592)
364 3b7f_A Glycosyl hydrolase, BNR 64.1 64 0.0022 27.1 22.1 179 98-283 177-391 (394)
365 3kci_A Probable E3 ubiquitin-p 62.0 71 0.0024 26.9 27.6 234 111-359 62-344 (389)
366 3q6k_A 43.2 kDa salivary prote 61.6 73 0.0025 26.9 22.6 212 42-263 25-306 (381)
367 1zi0_A DNA gyrase subunit A; b 58.6 72 0.0025 25.9 20.4 205 152-366 1-232 (307)
368 3f7f_A Nucleoporin NUP120; nuc 58.4 63 0.0022 29.9 9.5 31 286-316 229-259 (729)
369 3uc1_A DNA gyrase subunit A; D 58.2 77 0.0026 26.0 23.4 239 54-306 3-278 (327)
370 3no0_A DNA gyrase subunit A; D 54.2 81 0.0028 25.1 20.9 201 144-360 25-246 (276)
371 1sqj_A OXG-RCBH, oligoxylogluc 52.4 1.6E+02 0.0053 27.8 25.4 151 98-253 15-190 (789)
372 3zwu_A Alkaline phosphatase PH 43.6 74 0.0025 28.8 7.5 56 280-347 481-548 (592)
373 3al9_A Plexin-A2; beta-propell 42.5 1.2E+02 0.0043 26.9 8.7 61 286-355 411-476 (539)
374 3uc1_A DNA gyrase subunit A; D 40.0 1.5E+02 0.0053 24.2 23.3 234 111-360 3-279 (327)
375 3q6k_A 43.2 kDa salivary prote 39.1 1.7E+02 0.006 24.6 20.2 173 41-221 85-306 (381)
376 3al9_A Plexin-A2; beta-propell 37.9 96 0.0033 27.6 7.3 70 99-169 401-476 (539)
377 1suu_A DNA gyrase subunit A; t 35.8 1.8E+02 0.006 23.6 25.2 190 111-307 8-231 (312)
378 4a9v_A PHOX; hydrolase, beta-p 33.4 1.5E+02 0.0051 26.7 7.6 57 279-347 480-548 (592)
379 3no0_A DNA gyrase subunit A; D 31.5 1.9E+02 0.0067 22.9 21.9 205 42-262 23-245 (276)
380 1wp5_A Topoisomerase IV; broke 31.4 2.1E+02 0.0073 23.3 23.2 248 107-366 3-283 (323)
381 1q47_A Semaphorin 3A; beta pro 30.9 1.8E+02 0.0063 25.5 7.8 60 156-216 422-487 (495)
382 3ol2_B Plexin-B1; beta-propell 30.8 2.5E+02 0.0084 25.0 8.6 70 99-169 388-461 (528)
383 1q47_A Semaphorin 3A; beta pro 30.4 2.5E+02 0.0085 24.7 8.6 63 289-355 422-487 (495)
384 3nvq_A Semaphorin-7A; beta-pro 26.0 2.7E+02 0.0093 25.1 8.1 60 156-216 381-444 (590)
385 1zvt_A Topoisomerase IV subuni 25.8 2.4E+02 0.0082 22.0 13.6 145 203-360 3-163 (256)
386 3nvq_A Semaphorin-7A; beta-pro 25.8 2.1E+02 0.0071 25.9 7.3 60 289-355 381-444 (590)
387 1olz_A Semaphorin 4D; developm 25.7 2.7E+02 0.0091 25.6 8.2 58 290-355 417-477 (663)
388 4gz8_A Semaphorin-3A; multi-do 25.5 2.5E+02 0.0087 25.8 7.9 63 289-355 430-495 (667)
389 4gz8_A Semaphorin-3A; multi-do 23.3 2.5E+02 0.0085 25.9 7.4 59 157-216 431-495 (667)
390 3kci_A Probable E3 ubiquitin-p 22.0 3.5E+02 0.012 22.6 27.5 197 100-307 107-345 (389)
391 3ol2_B Plexin-B1; beta-propell 21.3 3.2E+02 0.011 24.3 7.5 68 278-355 390-461 (528)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-52 Score=363.10 Aligned_cols=284 Identities=20% Similarity=0.286 Sum_probs=258.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.++|++++|+|++++|++|+.||+|++||+.+++... . +.+|...|.+++|+|+ +++|++|+.
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~----------l~~h~~~V~~v~~~~~--~~~l~sgs~ 170 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---T----------LKGHTDSVQDISFDHS--GKLLASCSA 170 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---E----------ECCCSSCEEEEEECTT--SSEEEEEET
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---E----------EeccCCcEEEEEEcCC--CCEEEEEeC
Confidence 499999999999999999999999999999998765433 2 3456678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|++|++||+.+++.+..+.+|.. .|.+++|+|++..+ ++|+.|+.|++||++ ++.++..+. +|...|.++.++|
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h~~-~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~--~~~~~~~~~--~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHI-VSASRDKTIKMWEVQ--TGYCVKTFT--GHREWVRMVRPNQ 244 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEE-EEEETTSEEEEEETT--TCCEEEEEE--CCSSCEEEEEECT
T ss_pred CCeEEEEeCCCCceeEEEcCCCC-CEEEEEEeCCCCEE-EEEeCCCeEEEEECC--CCcEEEEEe--CCCccEEEEEECC
Confidence 99999999999999999999887 99999999999887 999999999999999 788888877 6778999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-C--------------------CCEEEEEeCCCcEEE
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D--------------------VDTLVTAGTDGCLKL 258 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~--------------------~~~l~~~~~d~~i~i 258 (366)
++ .++++|+.|+.|++||+++. .....+.+|...|.+++|+ + +.+|++++.|+.|++
T Consensus 245 ~g-~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 245 DG-TLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp TS-SEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CC-CEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 98 89999999999999999987 6788889999999999997 3 668999999999999
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
||+++++++..+.+|...|..++|+ |++++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|
T Consensus 323 wd~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~D~~i~vwd~~~~~~~~~~--------~~h~~~v~~l~~~~-- 390 (410)
T 1vyh_C 323 WDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTL--------NAHEHFVTSLDFHK-- 390 (410)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEEC--SSSSCEEEEETTTEEEEECCTTSCCCEEE--------ECCSSCEEEEEECS--
T ss_pred EECCCCceEEEEECCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCceEEEE--------cCCCCcEEEEEEcC--
Confidence 9999999999999999988888776 99999999999999999999988877666 46889999999999
Q ss_pred CCceEEEEeCCCCcEEEEEec
Q 017773 339 EDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 339 ~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++.+|++|+.||.|++|+++
T Consensus 391 -~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 391 -TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -SSSCEEEEETTSEEEEEC--
T ss_pred -CCCEEEEEeCCCcEEEEeCC
Confidence 77799999999999999864
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=345.59 Aligned_cols=286 Identities=20% Similarity=0.286 Sum_probs=255.1
Q ss_pred cCCCceEEEEECCC----CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 40 AVSDSIGVIEFDPS----DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 40 ~h~~~i~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
+|.+.|++++|+|+ +++|++|+.|++|+||++....... ...+.+|...|.+++|+|+ +.+++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~-----------~~~l~gh~~~v~~~~~~~~--~~~l~ 96 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL-----------QWSLEGHQLGVVSVDISHT--LPIAA 96 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE-----------EEEECCCSSCEEEEEECSS--SSEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee-----------eeeeccCCCCEEEEEECCC--CCEEE
Confidence 59999999999985 5699999999999999987643211 1124567789999999999 99999
Q ss_pred EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
+++.|++|++||+.+++.+..+..+.. .+.+++|+|+++.+ ++++.||.|++||++ .++....+. .+...+.++
T Consensus 97 s~s~D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l-~~g~~dg~v~i~~~~--~~~~~~~~~--~~~~~v~~~ 170 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYL-ATGTHVGKVNIFGVE--SGKKEYSLD--TRGKFILSI 170 (321)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEE-EEECTTSEEEEEETT--TCSEEEEEE--CSSSCEEEE
T ss_pred EEeCCCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEE-EEEcCCCcEEEEEcC--CCceeEEec--CCCceEEEE
Confidence 999999999999999999998888877 89999999999987 999999999999999 677777766 455689999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccc
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV 274 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 274 (366)
+|+|++ ++|++|+.|+.|++||++++ +.+..+.+|..+|.+++|+ ++++|++++.|+.|++||+++++.+..+.+|.
T Consensus 171 ~~spdg-~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 171 AYSPDG-KYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 999998 89999999999999999987 6888899999999999999 89999999999999999999999999999999
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
..+..++|+ |++.+|++++.|+.|++||+.+++++..+ .+|...|.+++|+| ++++|++++.||.|+
T Consensus 249 ~~v~~~~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~---~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 249 SWVLNVAFC--PDDTHFVSSSSDKSVKVWDVGTRTCVHTF--------FDHQDQVWGVKYNG---NGSKIVSVGDDQEIH 315 (321)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECT---TSSEEEEEETTCCEE
T ss_pred CceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCEEEEEE--------cCCCCcEEEEEECC---CCCEEEEEeCCCeEE
Confidence 988888777 99999999999999999999999888776 56899999999999 888999999999999
Q ss_pred EEEec
Q 017773 355 VFVGK 359 (366)
Q Consensus 355 iw~~~ 359 (366)
+||..
T Consensus 316 vwd~p 320 (321)
T 3ow8_A 316 IYDCP 320 (321)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-49 Score=340.20 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=246.7
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|.+.|++++|+|++++|++|+.||.|++||+.+..... . +..|...|.+++|+|+ +++|++|+
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~----------~~~~~~~v~~~~~s~~--~~~l~s~~ 116 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---A----------IPLRSSWVMTCAYAPS--GNYVACGG 116 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---E----------EECSSSCEEEEEECTT--SSEEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---E----------eecCCccEEEEEECCC--CCEEEEEe
Confidence 3599999999999999999999999999999987755432 2 3345578999999999 99999999
Q ss_pred CCCcEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 119 YDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 119 ~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
.|+.|++|++.++ .....+.+|.. .|.++.|++++. + ++++.|+.|++||++ +++.+..+. +|...|.+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l-~s~s~d~~i~~wd~~--~~~~~~~~~--~h~~~v~~ 189 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-I-VTSSGDTTCALWDIE--TGQQTTTFT--GHTGDVMS 189 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSS-CEEEEEEEETTE-E-EEEETTSCEEEEETT--TTEEEEEEC--CCSSCEEE
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCc-cEEEEEECCCCc-E-EEEECCCcEEEEECC--CCcEEEEEc--CCCCceEE
Confidence 9999999999875 34556777877 999999998764 4 899999999999999 778887776 67789999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
++|+|++ .++++|+.|+.|++||++++ .....+.+|...|++++|+ ++++|++++.|+.|++||+++++.+..+..+
T Consensus 190 ~~~~~~~-~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 190 LSLAPDT-RLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EEECCCC-CEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 9999998 89999999999999999987 6788899999999999999 8999999999999999999998887776533
Q ss_pred c--ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 274 V--NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 274 ~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
. ..+..++|+ |++++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+| ++.+|++|+.||
T Consensus 268 ~~~~~v~~~~~s--~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~s~---dg~~l~s~s~D~ 334 (340)
T 1got_B 268 NIICGITSVSFS--KSGRLLLAGYDDFNCNVWDALKADRAGVL--------AGHDNRVSCLGVTD---DGMAVATGSWDS 334 (340)
T ss_dssp TCCSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECT---TSSCEEEEETTS
T ss_pred CcccceEEEEEC--CCCCEEEEECCCCeEEEEEcccCcEeeEe--------ecCCCcEEEEEEcC---CCCEEEEEcCCc
Confidence 2 345555555 99999999999999999999988877665 56899999999999 888999999999
Q ss_pred cEEEEE
Q 017773 352 LLHVFV 357 (366)
Q Consensus 352 ~i~iw~ 357 (366)
.|+|||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-49 Score=334.35 Aligned_cols=286 Identities=18% Similarity=0.289 Sum_probs=246.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++|++|+.||.|++||+.++.... . +..|..+|.+++|+|+ +++|++|+.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~----------~~~~~~~v~~~~~~~~--~~~l~s~s~ 75 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---S----------IQVTETPVRAGKFIAR--KNWIIVGSD 75 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---E----------EECCSSCEEEEEEEGG--GTEEEEEET
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---E----------eeccCCcEEEEEEeCC--CCEEEEECC
Confidence 489999999999999999999999999999998754332 2 3345578999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC-ceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG-KCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 198 (366)
|++|++||+.+++.+..+..|.. .|.+++|+|+++.+ ++|+.|++|++||++ .+ .....+. +|...|.+++|+
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~sgs~D~~v~lWd~~--~~~~~~~~~~--~h~~~v~~v~~~ 149 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYV-LSGSDDLTVKLWNWE--NNWALEQTFE--GHEHFVMCVAFN 149 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEE-EEEETTSCEEEEEGG--GTTEEEEEEC--CCCSCEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEeCCCC-cEEEEEEcCCCCEE-EEECCCCeEEEEECC--CCcchhhhhc--ccCCcEEEEEEC
Confidence 99999999999999999999988 99999999999887 999999999999998 44 3444454 677899999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc---CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
|.+..++++|+.|+.|++||+++..........|...+..+.|+ ++.+|++++.|++|++||+++++++.++.+|..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 96558999999999999999988744444445677889999986 567999999999999999999999999999999
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce--EEEEeCCCCcE
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC--TLVAGGSDGLL 353 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~l~s~~~dg~i 353 (366)
.+..++++ |++.+|++|+.||.|++||+.+++....+ ..|...+.+++|+| ++. ++++|+.|| +
T Consensus 230 ~v~~~~~~--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~asg~~~g-~ 295 (304)
T 2ynn_A 230 NVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTL--------NVGLERSWCIATHP---TGRKNYIASGFDNG-F 295 (304)
T ss_dssp CEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEE--------CCSSSSEEEEEECT---TCGGGCEEEEETTE-E
T ss_pred CEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeec--------cCCCccEEEEEECC---CCCceEEEEecCCc-e
Confidence 98888777 99999999999999999999999988776 45678899999999 443 578877666 6
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
.+|++..
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 6888765
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-50 Score=348.97 Aligned_cols=314 Identities=18% Similarity=0.287 Sum_probs=261.3
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeec
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT 96 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (366)
......|++......... .+|.+.|++++|+|++++|++|+.||+|+|||+.+++... . +..|
T Consensus 45 ~~~~~~~~~~~~~~~~~l----~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~----------~~~h 107 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTL----QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---A----------IKLH 107 (380)
T ss_dssp GGGCCCCCCCCCEEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---E----------EECC
T ss_pred cccccccccceeEEeecc----cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---E----------EecC
Confidence 344456766655544333 3499999999999999999999999999999987754432 2 3345
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
...|.+++|+|+ +++|++|+.|+.+++|++.+.. ....+.+|.+ .|.++.|.|++...+++|+.|++|++
T Consensus 108 ~~~v~~~~~s~~--g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~ 184 (380)
T 3iz6_a 108 CPWVMECAFAPN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG-YASSCQYVPDQETRLITGSGDQTCVL 184 (380)
T ss_dssp CTTCCCCEECTT--SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS-CCCCCBCCSSSSSCEEEECTTSCEEE
T ss_pred CCCEEEEEECCC--CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCc-ceEEEEEecCCCCEEEEECCCCcEEE
Confidence 678999999999 9999999999999999997532 3345667777 89999999987665699999999999
Q ss_pred eeCCCCCCceeEeecC---CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 170 WDPRCDGGKCVSTVQP---SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
||++ +++.+..+.. .+|...|.+++|+|.+..++++|+.|+.|++||++.....+..+.+|...|++++|+ ++.
T Consensus 185 wd~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 262 (380)
T 3iz6_a 185 WDVT--TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262 (380)
T ss_dssp ECTT--TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS
T ss_pred EEcC--CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC
Confidence 9999 7777766632 367889999999884448999999999999999986657888999999999999999 899
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecccc-------eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccc
Q 017773 246 TLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP 318 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 318 (366)
+|++++.|++|++||+++++.+..+..+.. .+..++|+ |+|++|++|+.||.|++||+.+++....+..
T Consensus 263 ~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-- 338 (380)
T 3iz6_a 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS--ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-- 338 (380)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--SSSSEEEEECTTSCEEEEETTTCCEEEEECC--
T ss_pred eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC--CCCCEEEEEECCCCEEEEECCCCceEEEEec--
Confidence 999999999999999999998888765432 25555655 9999999999999999999998887765532
Q ss_pred ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 319 VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
...+|.+.|++++|+| +|++|++|+.||.|++|++.+.
T Consensus 339 --~~~~h~~~v~~l~~s~---dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 339 --LQNSHEGRISCLGLSS---DGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp --SCSSCCCCCCEEEECS---SSSEEEEECTTSCEEEEECCSS
T ss_pred --ccCCCCCceEEEEECC---CCCEEEEeeCCCCEEEEecCCC
Confidence 2257999999999999 8889999999999999999875
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.6e-50 Score=341.06 Aligned_cols=297 Identities=19% Similarity=0.250 Sum_probs=238.5
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|...|.+++|+|||++|++++ |+++++||......... ..............+...|.+++|+|+ + .|++|+.
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~d--~-~l~~~s~ 101 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDP--CAAPNEGFCSAGVQTEAGVADLTWVGE--R-GILVASD 101 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSG--GGTTCGGGCSEEEEESSCEEEEEEETT--T-EEEEEET
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccc--cccCCcceeeeeeccCCCEEEEEEeCC--C-eEEEEEC
Confidence 3788899999999999999887 77888887543111000 000001111223445678999999996 5 6789999
Q ss_pred CCcEEEEeCCCCceeEe----eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 120 DGVVMEYDLEKKVPIFE----RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
||+|++||+++++.... ..+|.. .|++++|+|+++++ ++|+.|+.|++||++ +++++..+. +|...|.++
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~-~V~~v~~spdg~~l-~sgs~d~~i~iwd~~--~~~~~~~~~--~h~~~V~~~ 175 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDD-IVSTVSVLSSGTQA-VSGSKDICIKVWDLA--QQVVLSSYR--AHAAQVTCV 175 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSS-CEEEEEECTTSSEE-EEEETTSCEEEEETT--TTEEEEEEC--CCSSCEEEE
T ss_pred CCEEEEEeccCCCceeEeeccccCCCC-CEEEEEECCCCCEE-EEEeCCCeEEEEECC--CCcEEEEEc--CcCCceEEE
Confidence 99999999998875543 346776 99999999999987 999999999999999 788888887 788899999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--cccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--GHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
+|+|++..++++|+.|+.|++||++++ ++...+. .|...+.+++|+ ++.+|++|+.||.|++||+++++++.++.
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred EecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence 999998778999999999999999987 5665553 455678999998 56788999999999999999999999999
Q ss_pred cccceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce-EEEEeCC
Q 017773 272 GHVNNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC-TLVAGGS 349 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s~~~ 349 (366)
+|...|..++|+ |++ ++|++|+.|++|++||+.+++... + .+|.+.|++++|+| ++. +|++++.
T Consensus 255 ~h~~~v~~v~fs--p~g~~~lasgs~D~~i~vwd~~~~~~~~-~--------~~H~~~V~~v~~sp---~~~~llas~s~ 320 (344)
T 4gqb_B 255 VHSQCVTGLVFS--PHSVPFLASLSEDCSLAVLDSSLSELFR-S--------QAHRDFVRDATWSP---LNHSLLTTVGW 320 (344)
T ss_dssp CCSSCEEEEEEC--SSSSCCEEEEETTSCEEEECTTCCEEEE-E--------CCCSSCEEEEEECS---SSTTEEEEEET
T ss_pred CCCCCEEEEEEc--cCCCeEEEEEeCCCeEEEEECCCCcEEE-E--------cCCCCCEEEEEEeC---CCCeEEEEEcC
Confidence 999999888877 987 579999999999999999887543 2 57999999999999 654 6789999
Q ss_pred CCcEEEEEecccCC
Q 017773 350 DGLLHVFVGKKKPL 363 (366)
Q Consensus 350 dg~i~iw~~~~~~l 363 (366)
||+|++|++.++++
T Consensus 321 D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 DHQVVHHVVPTEPL 334 (344)
T ss_dssp TSCEEEEECCC---
T ss_pred CCeEEEEECCCCCC
Confidence 99999999987665
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-48 Score=330.33 Aligned_cols=298 Identities=18% Similarity=0.235 Sum_probs=252.4
Q ss_pred ccCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.+|.+.|++++|+|++ ++|++|+.|++|++|++....... ......+.+|...|.+++|+|+ +.+|++|
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--------~~~~~~~~~h~~~v~~~~~s~d--g~~l~s~ 83 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--------GVPVRSFKGHSHIVQDCTLTAD--GAYALSA 83 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--------EEEEEEEECCSSCEEEEEECTT--SSEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--------cccceEEeCCcccEEEEEECCC--CCEEEEE
Confidence 3599999999999965 899999999999999997643211 1122345677789999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|++|++||+.+++.+..+.+|.. .|.+++|+|++..+ ++|+.|+.|++||++ ++++..+. +|...+.++++
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~s~s~D~~i~vwd~~---~~~~~~~~--~h~~~v~~~~~ 156 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMI-ISGSRDKTIKVWTIK---GQCLATLL--GHNDWVSQVRV 156 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSCEE-EEEETTSCEEEEETT---SCEEEEEC--CCSSCEEEEEE
T ss_pred eCCCEEEEEECCCCCeeEEEccCCC-cEEEEEEcCCCCEE-EEEeCCCeEEEEECC---CCeEEEEe--ccCCcEEEEEE
Confidence 9999999999999999999999988 99999999998887 999999999999997 45666665 67789999999
Q ss_pred cCCC-----CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 198 HPFG-----SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 198 ~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
.|.+ ...+++++.|+.|++||+++. +....+.+|...|.+++|+ ++++|++++.||.|++||+++++.+..+.
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 9953 248999999999999999987 6777888999999999999 99999999999999999999999998888
Q ss_pred cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
.+ ..+..++|+ |++.+|++++.+ .+++|+++.+.....+..........|...+.+++|+| ||++|++|+.||
T Consensus 236 ~~-~~v~~~~~s--p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~sg~~Dg 308 (319)
T 3frx_A 236 AQ-DEVFSLAFS--PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA---DGQTLFAGYTDN 308 (319)
T ss_dssp CC-SCEEEEEEC--SSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT---TSSEEEEEETTS
T ss_pred CC-CcEEEEEEc--CCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC---CCCEEEEeecCc
Confidence 65 456666665 999999988765 59999998877666554332223345677899999999 999999999999
Q ss_pred cEEEEEeccc
Q 017773 352 LLHVFVGKKK 361 (366)
Q Consensus 352 ~i~iw~~~~~ 361 (366)
.|+||++.+.
T Consensus 309 ~i~vWd~~t~ 318 (319)
T 3frx_A 309 VIRVWQVMTA 318 (319)
T ss_dssp CEEEEEEEEC
T ss_pred eEEEEEEeec
Confidence 9999999764
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-48 Score=335.50 Aligned_cols=284 Identities=19% Similarity=0.310 Sum_probs=245.7
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|.++|++++|+|++++||+|+.||+|++||..+..... . +..|...|.+++|+|+ +.+|++|+
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~----------~~~~~~~v~~~~~sp~--g~~lasg~ 125 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---A----------VTMPCTWVMACAYAPS--GCAIACGG 125 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---E----------EECSSSCCCEEEECTT--SSEEEEES
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---E----------EecCCCCEEEEEECCC--CCEEEEee
Confidence 3599999999999999999999999999999987654332 2 2234567999999999 99999999
Q ss_pred CCCcEEEEeCCCC------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe
Q 017773 119 YDGVVMEYDLEKK------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 119 ~dg~i~iw~~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i 192 (366)
.|+.+++|++... .....+..|.. .|.+++|+|++..+ ++++.|++|++||++ +++.+..+. +|...|
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~t~s~D~~v~lwd~~--~~~~~~~~~--~h~~~v 199 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTN-YLSACSFTNSDMQI-LTASGDGTCALWDVE--SGQLLQSFH--GHGADV 199 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSS-CEEEEEECSSSSEE-EEEETTSEEEEEETT--TCCEEEEEE--CCSSCE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCC-cEEEEEEeCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEEc--CCCCCe
Confidence 9999999998643 34456667777 99999999998887 999999999999999 788888887 677799
Q ss_pred EEEEEcCCC-CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 193 CCVEFHPFG-SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 193 ~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
.+++++|+. ..++++|+.||.|++||++++ +.+..+..|...|++++|+ ++.+|++++.|++|++||+++.+.+..+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 999998852 279999999999999999998 6888899999999999999 8999999999999999999998877776
Q ss_pred ecccc--eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 271 KGHVN--NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 271 ~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
..+.. .+..++ |+|++.+|++|+.|+.|++||+.+++.+..+ .+|...|++++|+| ++++|++|+
T Consensus 279 ~~~~~~~~~~~~~--~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--------~~h~~~v~~l~~sp---dg~~l~sgs 345 (354)
T 2pbi_B 279 SKESIIFGASSVD--FSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--------FGHENRVSTLRVSP---DGTAFCSGS 345 (354)
T ss_dssp CCTTCCSCEEEEE--ECTTSSEEEEEETTSCEEEEETTTCSEEEEE--------CCCSSCEEEEEECT---TSSCEEEEE
T ss_pred cCCCcccceeEEE--EeCCCCEEEEEECCCcEEEEECCCCceEEEE--------ECCCCcEEEEEECC---CCCEEEEEc
Confidence 65432 344444 5599999999999999999999998877665 57999999999999 888999999
Q ss_pred CCCcEEEEE
Q 017773 349 SDGLLHVFV 357 (366)
Q Consensus 349 ~dg~i~iw~ 357 (366)
.||.|+||+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-48 Score=325.78 Aligned_cols=286 Identities=20% Similarity=0.374 Sum_probs=250.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-------------~~~~h~~~v~~~~~~~~--~~~l~s~~~ 85 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------------TISGHKLGISDVAWSSD--SNLLVSASD 85 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-------------EECCCSSCEEEEEECTT--SSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-------------hhccCCCceEEEEEcCC--CCEEEEECC
Confidence 499999999999999999999999999999987654322 23456678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
|+.|++||+.+++.+..+..|.. .|.+++|+|+++.+ ++++.|+.|++||++ +++.+..+. .|..+|.+++|+|
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~ 159 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLI-VSGSFDESVRIWDVK--TGKCLKTLP--AHSDPVSAVHFNR 159 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEE-EEEETTSCEEEEETT--TCCEEEEEC--CCSSCEEEEEECT
T ss_pred CCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCEEEEEec--CCCCcEEEEEEcC
Confidence 99999999999999999999887 99999999998887 999999999999999 777777776 5677999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEe-ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVF-DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
++ .++++++.|+.|++||+++. +.+..+ ..+..++..++|+ ++++|++++.|+.|++||+++++.+..+.+|....
T Consensus 160 ~~-~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 160 DG-SLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp TS-SEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred CC-CEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 98 79999999999999999987 444444 4566789999999 89999999999999999999999999999887765
Q ss_pred eeEEEEEe-cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC--CCCcEE
Q 017773 278 NFVGLSVW-RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG--SDGLLH 354 (366)
Q Consensus 278 ~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~--~dg~i~ 354 (366)
..+...++ +++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++.+|++++ .|+.|+
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~p---~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--------QGHTDVVISTACHP---TENIIASAALENDKTIK 306 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECS---SSSEEEEEECTTTCCEE
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--------hccCCcEEEEeecC---cCCceEEEEccCCccEE
Confidence 55443333 57889999999999999999999887766 57899999999999 777999886 699999
Q ss_pred EEEec
Q 017773 355 VFVGK 359 (366)
Q Consensus 355 iw~~~ 359 (366)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.8e-49 Score=337.06 Aligned_cols=289 Identities=20% Similarity=0.274 Sum_probs=234.5
Q ss_pred cCCCceEEEEECCCCCEEEEeec------CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcE
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGI------ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRV 113 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 113 (366)
.|+..|++++|+|||++||+|+. |+.|++|+..++..... ......+|...|++++|+|+ +.+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---------~~~~~~~~~~~V~~~~~s~d--~~~ 108 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---------LCTAGVQTEAGVTDVAWVSE--KGI 108 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---------GCSEEEECSSCEEEEEEETT--TEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---------EecccCCCCCCEEEEEEcCC--CCE
Confidence 49999999999999999999997 67899998776543221 11223456678999999998 755
Q ss_pred EEEEcCCCcEEEEeCCCCceeE----eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIF----ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
++++.||+|++||+.+++... ...+|.. .|.+++|+|+++.+ ++|+.|+.|++||++ +++.+..+. .|.
T Consensus 109 -l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l-~sgs~dg~v~iwd~~--~~~~~~~~~--~h~ 181 (357)
T 4g56_B 109 -LVASDSGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQA-VSGGKDFSVKVWDLS--QKAVLKSYN--AHS 181 (357)
T ss_dssp -EEEETTSCEEEC--------CCCCEEECCCSS-CEEEEEECSSSSEE-EEEETTSCEEEEETT--TTEEEEEEC--CCS
T ss_pred -EEEECCCEEEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEE-EEEeCCCeEEEEECC--CCcEEEEEc--CCC
Confidence 456779999999998876433 2335666 99999999999887 999999999999999 788888876 677
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE--eecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCc
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV--FDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
..|.+++|+|++..++++++.|+.|++||++++ ++... ...|...+.+++|+ .+.+|++++.|+.|++||+++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 899999999998678999999999999999987 44433 34567789999998 46789999999999999999999
Q ss_pred eeeeeecccceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEE
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL 344 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 344 (366)
++..+.+|...|..++|+ |++ ++|++|+.|+.|+|||+++++.+.. .+|.+.|++++|+|. ++.+|
T Consensus 261 ~~~~~~~~~~~v~~l~~s--p~~~~~lasgs~D~~i~iwd~~~~~~~~~---------~~H~~~V~~vafsP~--d~~~l 327 (357)
T 4g56_B 261 SAQTSAVHSQNITGLAYS--YHSSPFLASISEDCTVAVLDADFSEVFRD---------LSHRDFVTGVAWSPL--DHSKF 327 (357)
T ss_dssp GCEEECCCSSCEEEEEEC--SSSSCCEEEEETTSCEEEECTTSCEEEEE---------CCCSSCEEEEEECSS--STTEE
T ss_pred EeEEEeccceeEEEEEEc--CCCCCEEEEEeCCCEEEEEECCCCcEeEE---------CCCCCCEEEEEEeCC--CCCEE
Confidence 999999999998888877 887 6799999999999999998877644 358999999999983 45699
Q ss_pred EEeCCCCcEEEEEecc
Q 017773 345 VAGGSDGLLHVFVGKK 360 (366)
Q Consensus 345 ~s~~~dg~i~iw~~~~ 360 (366)
++++.||.|++|++..
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 9999999999999865
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9e-48 Score=335.41 Aligned_cols=320 Identities=23% Similarity=0.358 Sum_probs=256.1
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee---c---
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV---C--- 90 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---~--- 90 (366)
+...+.|++...............|.+.|++++|+|+|++||+|+ ++.+++|++.++.... .+..+... .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~ 114 (393)
T 1erj_A 39 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENL 114 (393)
T ss_dssp SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------
T ss_pred CceEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccc
Confidence 334456766655432211111234999999999999999999987 6899999998765533 22222110 0
Q ss_pred --eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 91 --DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 91 --~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
.....+...|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+.+|.. .|.+++|+|+++.+ ++++.|+.|+
T Consensus 115 ~~~~~~~~~~~v~~v~~s~d--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l-~s~s~d~~v~ 190 (393)
T 1erj_A 115 NTSSSPSSDLYIRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKL-VSGSGDRTVR 190 (393)
T ss_dssp ------CCCCBEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEE-EEEETTSEEE
T ss_pred cccccCCCceeEEEEEECCC--CCEEEEEcCCCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEE-EEecCCCcEE
Confidence 001122345999999999 99999999999999999999999999999987 99999999999887 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcC-CCCcEEEEEecCCeEEEEecCCCCCCeeEe-------ecccCcEEEEE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCADKKAYAYDVRKMVDPVLVF-------DGHRKTVTYIR 240 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~ 240 (366)
+||++ +++....+. +...+.+++|+| ++ .++++|+.|+.|++||++++ ..+..+ .+|...|.+++
T Consensus 191 iwd~~--~~~~~~~~~---~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 191 IWDLR--TGQCSLTLS---IEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEETT--TTEEEEEEE---CSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEE
T ss_pred EEECC--CCeeEEEEE---cCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEE
Confidence 99999 777777665 344899999999 55 89999999999999999887 455544 57899999999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCC------------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDS------------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
|+ ++++|++++.|+.|++||+++. .+...+.+|...+..++++ |++.+|++|+.|+.|++||+.+
T Consensus 264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT--QNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC--GGGCEEEEEETTSEEEEEETTT
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC--CCCCEEEEEeCCCeEEEEECCC
Confidence 99 9999999999999999999763 3456778898888777776 9999999999999999999999
Q ss_pred CceEEEEecccccccCCCCceeeEEEeecc---CCCceEEEEeCCCCcEEEEEeccc
Q 017773 308 GEPVWVHDFEPVTAAGSERGFVSSVCWRRV---GEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
++++..+ .+|...|.+++|+|. +|++.+|++|+.||.|+||+++..
T Consensus 342 ~~~~~~l--------~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 GNPLLML--------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CCEEEEE--------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CeEEEEE--------CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9887766 568999999999873 347889999999999999998763
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.3e-47 Score=347.74 Aligned_cols=319 Identities=19% Similarity=0.225 Sum_probs=250.3
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCc----------
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHS---------- 87 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------- 87 (366)
..+..|++..+...... .+|.+.|++++|+|+|++||+|+.||+|+|||+.+..... ...+..|.
T Consensus 39 ~~v~l~~~~~~~~~~~~----~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~ 113 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIY----TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDS 113 (611)
T ss_dssp TEEEEEETTCSSCCEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECT
T ss_pred CEEEEecCCCcccCeEe----cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECC
Confidence 35555655544333222 2499999999999999999999999999999986433211 00111110
Q ss_pred ------------------------eeceeeeecCCceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCceeEeeecCCC
Q 017773 88 ------------------------KVCDYYICTPAKLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKVPIFERDEHGG 142 (366)
Q Consensus 88 ------------------------~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 142 (366)
.....+.+|...|.+++|+|+ +. .|++|+.|++|++||..+++....+.+|..
T Consensus 114 dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~--~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~ 191 (611)
T 1nr0_A 114 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS--RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191 (611)
T ss_dssp TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS--SSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred CCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCC--CCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence 111235689999999999998 75 699999999999999999888889999987
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-----CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEE
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-----SASRSAVCCVEFHPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 217 (366)
.|.+++|+|+++.+ ++++.|++|++||+. +++....+.. .+|...|.+++|+|++ .+|++++.|++|++|
T Consensus 192 -~V~~v~fspdg~~l-as~s~D~~i~lwd~~--~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 192 -FVHSVRYNPDGSLF-ASTGGDGTIVLYNGV--DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIW 266 (611)
T ss_dssp -CEEEEEECTTSSEE-EEEETTSCEEEEETT--TCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred -ceEEEEECCCCCEE-EEEECCCcEEEEECC--CCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence 99999999999877 999999999999998 6777766632 1688899999999998 899999999999999
Q ss_pred ecCCCCC------------------------------------------CeeEeecccCcEEEEEEc-CCCEEEEEeCCC
Q 017773 218 DVRKMVD------------------------------------------PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG 254 (366)
Q Consensus 218 d~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 254 (366)
|++++.. ....+.+|...|++++|+ ++++|++++.|+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9986521 122345789999999999 999999999999
Q ss_pred cEEEEecCCCceeeee-ecc------------------------------------------------------------
Q 017773 255 CLKLWNVNDSRVIRTY-KGH------------------------------------------------------------ 273 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~-~~~------------------------------------------------------------ 273 (366)
+|++||+.+++....+ .+|
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 9999999876543322 111
Q ss_pred ---------------------cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEE
Q 017773 274 ---------------------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSV 332 (366)
Q Consensus 274 ---------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 332 (366)
...+. +++++|+|++|++|+.|+.|++||+.+++...... .+|...|+++
T Consensus 427 ~~~~~~~v~~~~~~~~~~~~~~~~v~--~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-------~~h~~~v~~v 497 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEVPISYNSS--CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-------IVHPAEITSV 497 (611)
T ss_dssp EEEESSEEEEEETTEEEEEECSSCEE--EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-------EECSSCEEEE
T ss_pred EEEeCceEEEEeCCceeeeecCCCce--EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-------cCCCCceEEE
Confidence 11122 34455999999999999999999998765432211 3488999999
Q ss_pred EeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 333 CWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+|+| ||++|++++.|+.|++|++.+
T Consensus 498 ~fsp---dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 498 AFSN---NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp EECT---TSSEEEEEETTSCEEEEEGGG
T ss_pred EECC---CCCEEEEEcCCCCEEEEEcCC
Confidence 9999 889999999999999999976
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=327.97 Aligned_cols=298 Identities=19% Similarity=0.291 Sum_probs=240.1
Q ss_pred cCCC-ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSD-SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~-~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|.+ .|.+++|+|+|++||+|+.|+.|+||++.+....... ....+|...|.+++|+|+ +++|++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~----------~~~~~h~~~v~~~~~sp~--g~~l~s~s 80 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS----------VLSEGHQRTVRKVAWSPC--GNYLASAS 80 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE----------EECSSCSSCEEEEEECTT--SSEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee----------eeccccCCcEEEEEECCC--CCEEEEEE
Confidence 3777 9999999999999999999999999998765321100 112356788999999999 99999999
Q ss_pred CCCcEEEEeCCCC--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC-ceeEeecCCCCCCCeEEE
Q 017773 119 YDGVVMEYDLEKK--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG-KCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 119 ~dg~i~iw~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~~~~~i~~~ 195 (366)
.|++|++|++..+ +.+..+.+|.. .|.+++|+|+++.+ ++|+.|+.|++||++.... .++..+. .|...|.++
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~ 156 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLL-ATCSRDKSVWVWEVDEEDEYECVSVLN--SHTQDVKHV 156 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSS-CEEEEEECTTSSEE-EEEETTSCEEEEEECTTSCEEEEEEEC--CCCSCEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCC-CceEEEEeCCCCEE-EEEECCCeEEEEECCCCCCeEEEEEec--CcCCCeEEE
Confidence 9999999999876 35677888887 99999999999887 9999999999999982211 2333443 677899999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC---------
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS--------- 264 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~--------- 264 (366)
+|+|++ .+|++|+.|+.|++||.+... .....+.+|...|.+++|+ ++++|++++.|++|++||....
T Consensus 157 ~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 157 VWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 999998 799999999999999998752 2346788999999999999 8999999999999999997432
Q ss_pred ------ceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce----EEEEecccccccCCCCceeeEEE
Q 017773 265 ------RVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP----VWVHDFEPVTAAGSERGFVSSVC 333 (366)
Q Consensus 265 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~ 333 (366)
+++..+.+ |...+..++++ |++..|++++.|+.|++|+...+.. ...+. .....+|...|++++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWC--QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT---AHLHQAHSQDVNCVA 310 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEEC--TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE---EEETTSSSSCEEEEE
T ss_pred ccCCccceeEEecCCCCCcEEEEEEe--cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE---eeecccccCcEeEeE
Confidence 23344444 67777777766 9999999999999999999976532 11111 112257999999999
Q ss_pred eeccCCCc-eEEEEeCCCCcEEEEEecccC
Q 017773 334 WRRVGEDE-CTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 334 ~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~ 362 (366)
|+| ++ .+|++|+.||.|++|++.+++
T Consensus 311 ~~p---~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 311 WNP---KEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp ECS---SSTTEEEEEETTSCEEEEEECC--
T ss_pred EeC---CCceEEEEcCCCCcEEEEEecCCC
Confidence 999 65 499999999999999998743
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-46 Score=322.79 Aligned_cols=301 Identities=16% Similarity=0.223 Sum_probs=243.4
Q ss_pred cCCCceEEEEE-----CC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcE
Q 017773 40 AVSDSIGVIEF-----DP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRV 113 (366)
Q Consensus 40 ~h~~~i~~~~~-----s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 113 (366)
+|.+.|++++| ++ ++++|++|+.|++|++||+........ .......+.+|...|.+++|+|+ +.+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~~~~~~~l~~h~~~V~~~~~~~~--~~~ 90 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------FGIPHKALTGHNHFVSDLALSQE--NCF 90 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------SEEEEEEECCCSSCEEEEEECSS--TTE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------cccccchhccCCCceEEEEECCC--CCE
Confidence 49999999999 77 899999999999999999876433210 01122345678889999999999 999
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeE
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVC 193 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~ 193 (366)
+++|+.|++|++||+.+++.+..+.+|.. .|.+++|+|+++.+ ++++.|+.|++||+. ............|...|.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQS-EVYSVAFSPDNRQI-LSAGAEREIKLWNIL--GECKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCS-CEEEEEECSSTTEE-EEEETTSCEEEEESS--SCEEEECCTTTSCSSCEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCC-cEEEEEECCCCCEE-EEEcCCCEEEEEecc--CCceeeeecccCCCceee
Confidence 99999999999999999999999999988 99999999999887 999999999999998 333333333346778999
Q ss_pred EEEEcCCCC---------cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 194 CVEFHPFGS---------SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 194 ~~~~~~~~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
+++|+|++. .++++++.|+.|++||.+. .....+.+|...|.+++|+ ++++|++++.|+.|++||+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999862 5899999999999999543 5677888999999999999 999999999999999999954
Q ss_pred C-ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccc-----ccccCCCCceeeEEEeecc
Q 017773 264 S-RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP-----VTAAGSERGFVSSVCWRRV 337 (366)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~ 337 (366)
. .+...+. +...+..++|+ |++.+++++ .|+.|++||+.+++......+.. .....+|...|.+++|+|
T Consensus 245 ~~~~~~~~~-~~~~v~~v~~s--p~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 319 (343)
T 2xzm_R 245 LTYPQREFD-AGSTINQIAFN--PKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA- 319 (343)
T ss_dssp CSSCSEEEE-CSSCEEEEEEC--SSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-
T ss_pred Ccccceeec-CCCcEEEEEEC--CCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-
Confidence 4 4444443 34456666665 999888765 57789999998876554222221 111236888999999999
Q ss_pred CCCceEEEEeCCCCcEEEEEeccc
Q 017773 338 GEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 338 ~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+|++|++|+.||.|++|+++++
T Consensus 320 --~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 320 --LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp --SSCCEEEEETTSEEEEEEEEEE
T ss_pred --CCCeEEEecCCceEEEEEEEcc
Confidence 8889999999999999998764
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-46 Score=346.44 Aligned_cols=316 Identities=17% Similarity=0.265 Sum_probs=254.7
Q ss_pred cccccceeeeeecCCCceeeecCC-----------------CCccCCCceEEEEECCCCC-EEEEeecCCeEEEEEceec
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSS-----------------PNAAVSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSV 74 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~-----------------~~~~h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~ 74 (366)
.+.+.+..+.|++++..++....+ ...+|.+.|++++|+|+++ .|++|+.|++|++||..+.
T Consensus 101 ~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 355677788888888877765432 1346999999999999987 5999999999999997654
Q ss_pred ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee-------cCCCCceee
Q 017773 75 LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD-------EHGGRRVWS 147 (366)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~v~~ 147 (366)
+... .+.+|...|.+++|+|+ +++|++|+.|++|++||+.+++....+. +|.. .|.+
T Consensus 181 ~~~~-------------~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~-~V~~ 244 (611)
T 1nr0_A 181 KFKS-------------TFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFG 244 (611)
T ss_dssp EEEE-------------EECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEE
T ss_pred eEee-------------eeccccCceEEEEECCC--CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC-CEEE
Confidence 3221 24456778999999999 9999999999999999999998887774 5666 9999
Q ss_pred EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-----------------------------------------CC
Q 017773 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ-----------------------------------------PS 186 (366)
Q Consensus 148 i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~-----------------------------------------~~ 186 (366)
++|+|+++.+ ++++.|++|++||+. +++.+..+. ..
T Consensus 245 v~~spdg~~l-~s~s~D~~v~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 245 LTWSPDGTKI-ASASADKTIKIWNVA--TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEECTTSSEE-EEEETTSEEEEEETT--TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEE-EEEeCCCeEEEEeCC--CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 9999999887 999999999999998 555443331 13
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe-------------------------------------
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF------------------------------------- 229 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------------------------- 229 (366)
+|...|.+++|+|+| .+|++++.|+.|++||+.++. ....+
T Consensus 322 gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 322 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC-EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCc-eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 678899999999998 899999999999999987541 11100
Q ss_pred ---------------------------------------------ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 230 ---------------------------------------------DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 230 ---------------------------------------------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
..|...+.+++|+ ++++|++++.|++|++||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 0123457789999 999999999999999999987
Q ss_pred Cce--eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec-CceEEEEecccccccCCCCceeeEEEeeccCCC
Q 017773 264 SRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGED 340 (366)
Q Consensus 264 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 340 (366)
+.. +.. .+|...|..++|+ |+|++|++++.|+.|++|++.+ ++.... ....+|...|++++|+| |
T Consensus 480 ~~~~~~~~-~~h~~~v~~v~fs--pdg~~las~s~d~~v~~w~~~~~~~~~~~------~~~~~H~~~V~~v~fsp---d 547 (611)
T 1nr0_A 480 ASVSEVKT-IVHPAEITSVAFS--NNGAFLVATDQSRKVIPYSVANNFELAHT------NSWTFHTAKVACVSWSP---D 547 (611)
T ss_dssp TEEEEEEE-EECSSCEEEEEEC--TTSSEEEEEETTSCEEEEEGGGTTEESCC------CCCCCCSSCEEEEEECT---T
T ss_pred Cceeeeec-cCCCCceEEEEEC--CCCCEEEEEcCCCCEEEEEcCCCCceeee------eeeeecccceeEEEECC---C
Confidence 643 334 6788888888777 9999999999999999999987 443321 11245999999999999 8
Q ss_pred ceEEEEeCCCCcEEEEEeccc
Q 017773 341 ECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 341 ~~~l~s~~~dg~i~iw~~~~~ 361 (366)
|++|++|+.|++|++|++++.
T Consensus 548 g~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 548 NVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp SSEEEEEETTSCEEEEETTCT
T ss_pred CCEEEEEECCCcEEEEECCCc
Confidence 889999999999999999763
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.5e-46 Score=340.05 Aligned_cols=275 Identities=21% Similarity=0.357 Sum_probs=238.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...|.+++|+|++++|++++.||.|++||...... ..+.+|...|.+++|+|+ +++|++++.|
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--------------~~~~~~~~~v~~~~~s~~--g~~l~~~~~d 365 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--------------QTLTGHSSSVWGVAFSPD--GQTIASASDD 365 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--------------EEECCCSSCEEEEEECTT--SSEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--------------EEEeCCCCCEEEEEECCC--CCEEEEEeCC
Confidence 777777777777777777777777777777643211 123456678999999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+.|++||. +++.+..+..|.. .|.+++|+|+++.+ ++++.|+.|++||.. ++.+..+. +|...|.+++|+|+
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~-~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~---~~~~~~~~--~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTI-ASASDDKTVKLWNRN---GQLLQTLT--GHSSSVWGVAFSPD 437 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSS-CEEEEEECTTSSCE-EEEETTSEEEEECTT---CCEEEEEE--CCSSCEEEEEECTT
T ss_pred CEEEEEcC-CCCEEEEecCCCC-CeEEEEECCCCCEE-EEEeCCCEEEEEeCC---CCEEEEec--CCCCCeEEEEECCC
Confidence 99999996 5677788888887 99999999999988 999999999999965 66677766 67779999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
+ .++++++.|+.|++||... +.+..+.+|...|++++|+ ++++|++++.|+.|++||. +++++..+.+|...|..
T Consensus 438 ~-~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~ 513 (577)
T 2ymu_A 438 D-QTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 513 (577)
T ss_dssp S-SEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred C-CEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEE
Confidence 8 8999999999999999754 5788889999999999999 9999999999999999994 78889999999999888
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
++|+ |++++|++++.||.|++||. +++.+..+ .+|.+.|++++|+| |+++|++++.|+.|++||
T Consensus 514 l~~s--~dg~~l~s~~~dg~v~lwd~-~~~~~~~~--------~~h~~~v~~~~fs~---dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 514 VAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTL--------TGHSSSVWGVAFSP---DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEC--TTSSCEEEEETTSEEEEECT-TSCEEEEE--------ECCSSCEEEEEECT---TSSCEEEEETTSCEEEEC
T ss_pred EEEc--CCCCEEEEEECcCEEEEEeC-CCCEEEEE--------cCCCCCEEEEEEcC---CCCEEEEEeCCCEEEEeC
Confidence 8877 99999999999999999995 56666655 57999999999999 888999999999999997
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-46 Score=316.93 Aligned_cols=294 Identities=22% Similarity=0.302 Sum_probs=227.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.++|.+++|+|+ +||+|+.|+.|++|++....... ...+. ..+|...|.+++|+|+ +++|++|+.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~-~~~~~--------~~~h~~~v~~v~~sp~--~~~las~s~ 78 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL-IDVLD--------ETAHKKAIRSVAWRPH--TSLLAAGSF 78 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE-EEEEC--------TTCCCSCEEEEEECTT--SSEEEEEET
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE-EEEEe--------cCCccCCEEEEEECCC--CCEEEEEeC
Confidence 49999999999998 99999999999999997642111 00110 1126778999999999 999999999
Q ss_pred CCcEEEEeCCC-------CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC--CCceeEeecCCCCCC
Q 017773 120 DGVVMEYDLEK-------KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD--GGKCVSTVQPSASRS 190 (366)
Q Consensus 120 dg~i~iw~~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~~~~ 190 (366)
|++|++||+.. .+....+.+|.. .|.+++|+|++++| ++|+.|+.|++||++.. ..+++..+. +|..
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~l-as~s~D~~v~iwd~~~~~~~~~~~~~~~--~h~~ 154 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYL-ATCSRDKSVWIWETDESGEEYECISVLQ--EHSQ 154 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEE-EEEETTSCEEEEECCTTCCCCEEEEEEC--CCSS
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEE-EEEeCCCEEEEEeccCCCCCeEEEEEec--cCCC
Confidence 99999999853 345667778887 99999999999887 99999999999999521 123445554 6788
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEc-C--CCEEEEEeCCCcEEEEecCCC--
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFL-D--VDTLVTAGTDGCLKLWNVNDS-- 264 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~iwd~~~~-- 264 (366)
.|.+++|+|++ .+|++|+.|+.|++||.++.. +++..+.+|...|.+++|+ + +.+|++++.|++|++||++.+
T Consensus 155 ~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 155 DVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp CEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999998 899999999999999987642 4667888999999999998 5 668999999999999999765
Q ss_pred ------ceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCc-eeeEEEeec
Q 017773 265 ------RVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERG-FVSSVCWRR 336 (366)
Q Consensus 265 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 336 (366)
.....+.. |...+..++|+ +++ +|++++.||.|++||..+++....... ..+|.. .|.+++|+|
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWG--FNG-LIASVGADGVLAVYEEVDGEWKVFAKR-----ALCHGVYEINVVKWLE 305 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEEC--TTS-CEEEEETTSCEEEEEEETTEEEEEEEE-----SCTTTTSCEEEEEEC-
T ss_pred cccceeEEeeecccccccceEEEEEc--CCC-EEEEEeCCCEEEEEEcCCCceEEEecc-----ccccccceEEEEEEec
Confidence 34445554 88888888776 654 899999999999999987753211111 145766 899999998
Q ss_pred cCCCceEEEEeCCCCcEEEEEecc
Q 017773 337 VGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 337 ~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.. ++++|++|+.||.|++|++++
T Consensus 306 ~~-~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LN-GKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC--
T ss_pred CC-CceEEEEecCCCcEEEEEecc
Confidence 32 466999999999999999875
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-45 Score=313.21 Aligned_cols=301 Identities=22% Similarity=0.284 Sum_probs=249.1
Q ss_pred ccCCCceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 39 AAVSDSIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
.+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+... ......+.+|...|.+++|+|+ +++|+++
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l~~h~~~V~~~~~s~d--g~~l~s~ 104 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRALRGHSHFVSDVVISSD--GQFALSG 104 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEECCCSSCEEEEEECTT--SSEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEEeCCCCCEEEEEECCC--CCEEEEE
Confidence 359999999999998 5899999999999999998755432 1112235567789999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
+.|+.|++|+............+.. .+..+.+.+++..+ ++++.|+.+++||+. ..........+|...+..++|
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~s~s~d~~~~~~d~~---~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSDNRQI-VSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCE-EEEETTSCEEEECTT---SCEEEEECSSSCSSCEEEEEE
T ss_pred cccccceEEeecccceeeeecCCCC-ceeEEEEeecCccc-eeecCCCeEEEEEeC---CCceEEEEeccccCcccceEE
Confidence 9999999999999888887777776 88899999988887 999999999999987 333444455578889999999
Q ss_pred cCCCC-cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 198 HPFGS-SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 198 ~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
++++. .++++++.|+.|++||+++. +....+.+|..+|++++|+ ++++|++++.|+.|++||+++.+++..+..+.
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~- 257 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD- 257 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-
Confidence 98753 57788999999999999987 6788889999999999999 89999999999999999999999998888654
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccc-ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP-VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
.+..+.++ |++.++ +++.|+.|++||++++..+..+.... .....+|...|++++|+| ++++|++|+.||.|+
T Consensus 258 ~v~~~~~~--~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 258 IINALCFS--PNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA---DGQTLFAGYTDNLVR 331 (340)
T ss_dssp CEEEEEEC--SSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT---TSSEEEEEETTSCEE
T ss_pred eEEeeecC--CCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC---CCCEEEEEeCCCEEE
Confidence 56666665 776554 55678999999999888776654322 123357889999999999 888999999999999
Q ss_pred EEEecccC
Q 017773 355 VFVGKKKP 362 (366)
Q Consensus 355 iw~~~~~~ 362 (366)
||+++++.
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 99998763
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-45 Score=311.99 Aligned_cols=278 Identities=17% Similarity=0.102 Sum_probs=230.8
Q ss_pred cccccceeeeeecCCCceeeecCCCC-------------------------ccCCCceEEEEECCCCCEEEEeecCCeEE
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPN-------------------------AAVSDSIGVIEFDPSDSVFATGGIARKIR 67 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~-------------------------~~h~~~i~~~~~s~~~~~l~t~~~dg~i~ 67 (366)
.+...+..+.|++++..++.+..... ..|...|++++|+|++ .|++|+.||+|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 34456778889999887776652110 0156789999999986 688999999999
Q ss_pred EEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceee
Q 017773 68 IYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS 147 (366)
Q Consensus 68 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 147 (366)
|||+.+++...... ....+|...|++++|+|+ +++|++|+.|++|++||+.+++.+..+.+|.. .|.+
T Consensus 107 lWd~~~~~~~~~~~---------~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~-~V~~ 174 (344)
T 4gqb_B 107 LWELDENETLIVSK---------FCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA-QVTC 174 (344)
T ss_dssp EEEECTTSSCEEEE---------EEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEE
T ss_pred EEeccCCCceeEee---------ccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC-ceEE
Confidence 99998876543111 123456789999999999 99999999999999999999999999999988 9999
Q ss_pred EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee
Q 017773 148 VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 148 i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 227 (366)
++|++++..++++++.|+.|++||++ +++....+....+...+.+++|+|++..++++|+.||.|++||++++ +++.
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~ 251 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTR--CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVL 251 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETT--SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCE
T ss_pred EEecCCCCCceeeecccccccccccc--ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEE
Confidence 99999998777999999999999999 78888887766666789999999987789999999999999999988 7888
Q ss_pred EeecccCcEEEEEEc-CC-CEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEEecCCCeEEEEE
Q 017773 228 VFDGHRKTVTYIRFL-DV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYD 304 (366)
Q Consensus 228 ~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd 304 (366)
.+.+|...|++++|+ ++ .+|++++.|++|++||+++++++ .+.+|...|..++|+ |++. +|++++.|++|++|+
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~s--p~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWS--PLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEEC--SSSTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEe--CCCCeEEEEEcCCCeEEEEE
Confidence 999999999999999 65 57999999999999999988765 678899998888877 9886 567899999999999
Q ss_pred eecCc
Q 017773 305 VRWGE 309 (366)
Q Consensus 305 ~~~~~ 309 (366)
+.+..
T Consensus 329 v~~~~ 333 (344)
T 4gqb_B 329 VPTEP 333 (344)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 97643
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-44 Score=306.38 Aligned_cols=311 Identities=14% Similarity=0.174 Sum_probs=260.6
Q ss_pred ccccceeeeeecCCCceeeecCCCC---------------ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceeccccc
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPN---------------AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDH 78 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~---------------~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~ 78 (366)
+.+.+..+.|+++++.++....... .+|.+.|++++|+|++++|++++ ||.|++|++.+.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 3445667778888877765543221 23999999999999999999999 9999999998765544
Q ss_pred ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCc
Q 017773 79 PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPV 156 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~ 156 (366)
....+. ...|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....+..|.. .|.+++|+|+++.
T Consensus 87 ~~~~~~--------~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 87 PVSQLD--------CLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKV 155 (337)
T ss_dssp CSEEEE--------CSCTTSBEEEEEECTT--SSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSE
T ss_pred eeeccc--------ccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-ceEEEEECCCCCE
Confidence 322222 1135678999999999 9999999999999999999886 5566777776 8999999999888
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcE
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTV 236 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 236 (366)
+ ++++.||.|++||++ +++....+. .|...+.+++|+|++ ..+++++.|+.|++||+++. +.+..+ .+...+
T Consensus 156 l-~~~~~dg~v~~~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v 227 (337)
T 1gxr_A 156 C-FSCCSDGNIAVWDLH--NQTLVRQFQ--GHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQI 227 (337)
T ss_dssp E-EEEETTSCEEEEETT--TTEEEEEEC--CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCE
T ss_pred E-EEEeCCCcEEEEeCC--CCceeeeee--cccCceEEEEECCCC-CEEEEEecCCcEEEEECCCC-ceEeee-cCCCce
Confidence 7 899999999999999 777777776 567799999999998 89999999999999999987 455554 478899
Q ss_pred EEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 237 TYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 237 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
.+++|+ +++++++++.|+.|++||+++++.. .+..|...+..++++ |++++|++++.||.|++||+.+++.+...
T Consensus 228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~~~~- 303 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEEC--CCCCEEEEecCCCcEEEEECCCCeEEEEe-
Confidence 999999 8999999999999999999988754 677788888877777 99999999999999999999998887543
Q ss_pred cccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 316 FEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.|...|.+++|+| ++++|++++.||.|++|++.
T Consensus 304 --------~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 304 --------KESSSVLSCDISV---DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --------ECSSCEEEEEECT---TSCEEEEEETTSCEEEEEEE
T ss_pred --------cCCCcEEEEEECC---CCCEEEEecCCCeEEEEEEe
Confidence 3678899999999 88899999999999999974
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-45 Score=307.81 Aligned_cols=251 Identities=17% Similarity=0.234 Sum_probs=225.6
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
.+.+|...|++++|+|+ +++|++++.||+|++||+++++.+..+..|.. +|.+++|+|+++.+ ++|+.|+.|++||
T Consensus 8 ~~~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~s~s~d~~i~vwd 83 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWI-IVGSDDFRIRVFN 83 (304)
T ss_dssp EEEEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEE-EEEETTSEEEEEE
T ss_pred eecCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEE-EEECCCCEEEEEE
Confidence 45677889999999999 99999999999999999999999999998887 99999999999887 9999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc--CCCEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL--DVDTLVT 249 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~ 249 (366)
+. +++.+..+. +|...|.+++|+|++ .++++|+.|++|++||+++.......+.+|...|.+++|+ ++.+|++
T Consensus 84 ~~--~~~~~~~~~--~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 84 YN--TGEKVVDFE--AHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TT--TCCEEEEEE--CCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred CC--CCcEEEEEe--CCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 99 788888877 678899999999998 8999999999999999998755667788999999999998 5689999
Q ss_pred EeCCCcEEEEecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 250 AGTDGCLKLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 250 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
++.|++|++||+++..+...+. +|...+..+.+.+.+++.+|++|+.|+.|++||+++++++..+ .+|...
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--------~~h~~~ 230 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--------EGHMSN 230 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSC
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--------CCCCCC
Confidence 9999999999999887766665 4556788888886678999999999999999999999888776 568999
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
|.+++|+| ++.+|++|+.||.|++||+++.+
T Consensus 231 v~~~~~~p---~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 231 VSFAVFHP---TLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEEECS---SSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEECC---CCCEEEEEcCCCeEEEEECCCCc
Confidence 99999999 77799999999999999988754
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-45 Score=323.06 Aligned_cols=327 Identities=15% Similarity=0.225 Sum_probs=262.7
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
..+..+..|+..++..... .....|...|++++|+|++++|++|+.||.|++|++....... .....+.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~---------~~~~~~~ 110 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKP--IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI---------NSMARFS 110 (416)
T ss_dssp CCCCCCEEEESSSGGGCSC--SCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC---------CEEEECC
T ss_pred CCCCeEEEEEccCCCCCcE--EEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc---------cchhhcc
Confidence 3566778888776643211 1123489999999999999999999999999999998732211 0122344
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc------eeEe---eecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV------PIFE---RDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
+|...|.+++|+|+ .+.+|++++.|+.|++||+.+++ .... ...|.. .|.+++|+|++..++++++.||
T Consensus 111 ~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 111 NHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp CSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC-CCCEEEECSSCTTEEEEESSSS
T ss_pred CCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC-CeeEEEeCCCCCcEEEEEcCCC
Confidence 56789999999996 36899999999999999999876 3332 245665 8999999999666669999999
Q ss_pred cEEEeeCCCCCCceeEeecCCC----CCCCeEEEEEcCCCCcEEEEEecCC---eEEEEecCCCCCCeeEee-cccCcEE
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSA----SRSAVCCVEFHPFGSSLVAAGCADK---KAYAYDVRKMVDPVLVFD-GHRKTVT 237 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~-~~~~~v~ 237 (366)
.|++||++ .++.+..+.... |...+.+++|+|++..++++++.|+ .|++||+++...+...+. +|...|.
T Consensus 189 ~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 189 FASIWDLK--AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266 (416)
T ss_dssp CEEEEETT--TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE
T ss_pred CEEEEECC--CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCcee
Confidence 99999999 777777776431 2678999999999867999999998 999999998756777887 8999999
Q ss_pred EEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceEEEE
Q 017773 238 YIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 238 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
+++|+ ++.+|++++.|+.|++||+++++++..+..|...+..++|+ |++ .+|++++.|+.|++||+.+++.....
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA--PEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC--TTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC--CCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 99998 68899999999999999999999999999999998888877 998 89999999999999999876543211
Q ss_pred ec-------------cc--------------ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 315 DF-------------EP--------------VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 315 ~~-------------~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
.. .+ ......|..++.+++|+| +|++|++++.||.|+||++.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF---GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET---TTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEee---CCeEEEEeCCCCeEEEEEeccC
Confidence 00 00 011122677888999999 9999999999999999999864
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-44 Score=317.38 Aligned_cols=271 Identities=19% Similarity=0.304 Sum_probs=237.1
Q ss_pred ccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceeccc
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLV 76 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~ 76 (366)
..|...+..+.|++++..++.+..++.+ +|.+.|++++|+|++++|++|+.||+|++||+.+.+.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 3455667777777777777766665533 3999999999999999999999999999999976543
Q ss_pred ccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCc
Q 017773 77 DHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPV 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 156 (366)
.. .+.+|...|.+++|+|+ +++|++|+.|++|++||+.++..+..+.+|.. .|.++.++|++..
T Consensus 185 ~~-------------~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 185 IR-------------TMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTL 248 (410)
T ss_dssp EE-------------CCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSE
T ss_pred eE-------------EEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCE
Confidence 22 23456678999999999 99999999999999999999999999999987 8999999999887
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC-------------------CcEEEEEecCCeEEEE
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG-------------------SSLVAAGCADKKAYAY 217 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~d~~i~i~ 217 (366)
+ ++|+.|+.|++||+. ++++...+. .|...|.+++|+|++ +.++++|+.|+.|++|
T Consensus 249 l-~s~s~D~~v~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 249 I-ASCSNDQTVRVWVVA--TKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp E-EEEETTSCEEEEETT--TCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred E-EEEcCCCeEEEEECC--CCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 7 999999999999998 777777776 677799999999962 2689999999999999
Q ss_pred ecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 218 DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 218 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
|++++ ..+..+.+|...|.+++|+ ++.+|++++.|+.|++||+++++++..+.+|...|..++|+ |++.+|++|+.
T Consensus 324 d~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~sgs~ 400 (410)
T 1vyh_C 324 DVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSV 400 (410)
T ss_dssp ETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC--SSSSCEEEEET
T ss_pred ECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc--CCCCEEEEEeC
Confidence 99987 6888899999999999999 89999999999999999999999999999999998888777 99999999999
Q ss_pred CCeEEEEEee
Q 017773 297 TNQVFVYDVR 306 (366)
Q Consensus 297 dg~i~iwd~~ 306 (366)
||.|++|+++
T Consensus 401 D~~i~vW~~r 410 (410)
T 1vyh_C 401 DQTVKVWECR 410 (410)
T ss_dssp TSEEEEEC--
T ss_pred CCcEEEEeCC
Confidence 9999999863
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=304.48 Aligned_cols=242 Identities=20% Similarity=0.345 Sum_probs=220.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|...|.+++|+|++.++++++.|++|++||+.+++... . +..|...+.+++|+|+ +++|++++.
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~----------~~~~~~~~~~~~~spd--g~~l~~g~~ 142 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---S----------IDAGPVDAWTLAFSPD--SQYLATGTH 142 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---E----------EECCTTCCCCEEECTT--SSEEEEECT
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---E----------EeCCCccEEEEEECCC--CCEEEEEcC
Confidence 499999999999999999999999999999998765433 2 2334567899999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
||.|++|++++++....+..+.. .|.+++|+|+++++ ++|+.||.|++||++ +++.+..+. +|..+|.+++|+|
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l-asg~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~sp 216 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGK-FILSIAYSPDGKYL-ASGAIDGIINIFDIA--TGKLLHTLE--GHAMPIRSLTFSP 216 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSS-CEEEEEECTTSSEE-EEEETTSCEEEEETT--TTEEEEEEC--CCSSCCCEEEECT
T ss_pred CCcEEEEEcCCCceeEEecCCCc-eEEEEEECCCCCEE-EEEcCCCeEEEEECC--CCcEEEEEc--ccCCceeEEEEcC
Confidence 99999999999998888888876 89999999999987 999999999999999 788888776 6777999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
++ .+|++|+.|+.|++||+++. +....+.+|...|.+++|+ ++.+|++++.|++|++||+++++++.++.+|...|.
T Consensus 217 d~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 217 DS-QLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp TS-CEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CC-CEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 98 89999999999999999987 6788899999999999999 899999999999999999999999999999999988
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.++|+ |++++|++++.||.|++||+.
T Consensus 295 ~v~~s--~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYN--GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEC--TTSSEEEEEETTCCEEEEECC
T ss_pred EEEEC--CCCCEEEEEeCCCeEEEEeCC
Confidence 88777 999999999999999999963
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.2e-44 Score=310.24 Aligned_cols=297 Identities=13% Similarity=0.134 Sum_probs=242.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|.++|++++|+|++++|++|+.||.|++|++.+.+.. ....+.+|...|.+++|+|+ +++|++++.|
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d 73 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-----------QVHELKEHNGQVTGVDWAPD--SNRIVTCGTD 73 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-----------EEEEEECCSSCEEEEEEETT--TTEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-----------eeeeecCCCCcccEEEEeCC--CCEEEEEcCC
Confidence 7899999999999999999999999999998875310 11223456678999999998 9999999999
Q ss_pred CcEEEEeCCCCceeEee--ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce--eEeecCCCCCCCeEEEE
Q 017773 121 GVVMEYDLEKKVPIFER--DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC--VSTVQPSASRSAVCCVE 196 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~~~~~i~~~~ 196 (366)
|.|++||+.+++..... ..|.. .|.+++|+|+++.+ ++++.|+.|++||++ .... ........|...|.+++
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINR-AARCVRWAPNEKKF-AVGSGSRVISICYFE--QENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSS-CEEEEEECTTSSEE-EEEETTSSEEEEEEE--TTTTEEEEEEECTTCCSCEEEEE
T ss_pred CeEEEEECCCCeeeeeEEeecCCC-ceeEEEECCCCCEE-EEEeCCCEEEEEEec--CCCcceeeeeeecccCCCeeEEE
Confidence 99999999888654443 45555 89999999998877 999999999999998 4432 22222235778999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCC-----------------CCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEE
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRK-----------------MVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i 258 (366)
|+|++ .++++++.|+.|++||++. ..+.+..+..|...+.+++|+ ++++|++++.|+.|++
T Consensus 150 ~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 150 WHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp ECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred EcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 99998 8999999999999999641 125677788899999999999 8899999999999999
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec--CceEEEEecc-------------------
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW--GEPVWVHDFE------------------- 317 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~------------------- 317 (366)
||+++++++..+..|...+..++|+ |++.+|++| .|+.|++|++.+ ++......+.
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFI--TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEE--ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred EECCCCceeEEEccCCCCeEEEEEe--cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 9999999999999998888888877 999999888 899999999998 5311110000
Q ss_pred -----c-------ccccCCCCceeeEEEeeccCCCc---eEEEEeCCCCcEEEEEecc
Q 017773 318 -----P-------VTAAGSERGFVSSVCWRRVGEDE---CTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 318 -----~-------~~~~~~~~~~v~~~~~~~~~~~~---~~l~s~~~dg~i~iw~~~~ 360 (366)
. .....+|...|++++|+| ++| .+|++++.||.|++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLS--GGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEE--STTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccCccccccccccccCCcceeEEec--CCCcceeeEEEecCCCceEEEEecC
Confidence 0 122258999999999775 155 8999999999999999876
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-44 Score=309.23 Aligned_cols=279 Identities=15% Similarity=0.133 Sum_probs=230.8
Q ss_pred ccccccceeeeeecCCCceeeecCCCC-------------------------ccCCCceEEEEECCCCCEEEEeecCCeE
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPN-------------------------AAVSDSIGVIEFDPSDSVFATGGIARKI 66 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-------------------------~~h~~~i~~~~~s~~~~~l~t~~~dg~i 66 (366)
..|...+..+.|++++..++.+..+.. ..|...|++++|+|+++++ +++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEE
Confidence 356778889999999999988775321 1388899999999998654 56789999
Q ss_pred EEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCcee
Q 017773 67 RIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVW 146 (366)
Q Consensus 67 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~ 146 (366)
+|||+.+++...... ....+|...|++++|+|+ +++|++|+.|+.|++||+.+++.+..+..|.. .|.
T Consensus 118 ~lWd~~~~~~~~~~~---------~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-~v~ 185 (357)
T 4g56_B 118 ELWEILEKESLLVNK---------FAKYEHDDIVKTLSVFSD--GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-EVN 185 (357)
T ss_dssp EEC--------CCCC---------EEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEE
T ss_pred EEeeccccceeEEEe---------eccCCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEE
Confidence 999998765433111 112356788999999999 99999999999999999999999999999887 999
Q ss_pred eEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe
Q 017773 147 SVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV 226 (366)
Q Consensus 147 ~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 226 (366)
+++|+++++.++++++.||.|++||++ ++++...+....+...+.+++|+|++..++++|+.|+.|++||++++ +.+
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~ 262 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTR--KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSA 262 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTT--SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGC
T ss_pred EEEEccCCCceeeeeccCCceEEEECC--CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEe
Confidence 999999988776999999999999999 67777776666677789999999987789999999999999999987 688
Q ss_pred eEeecccCcEEEEEEc-CC-CEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEec-CCCeEEEecCCCeEEEE
Q 017773 227 LVFDGHRKTVTYIRFL-DV-DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWR-HGGLLGCGSETNQVFVY 303 (366)
Q Consensus 227 ~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iw 303 (366)
..+.+|...|++++|+ ++ .+|++++.|++|++||+++++++..+ +|...|..++|+ | ++.+|++++.||+|++|
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafs--P~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWS--PLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEEC--SSSTTEEEEEETTSCEEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEe--CCCCCEEEEEcCCCeEEEE
Confidence 8899999999999998 54 67999999999999999999877654 799998888777 8 79999999999999999
Q ss_pred EeecCc
Q 017773 304 DVRWGE 309 (366)
Q Consensus 304 d~~~~~ 309 (366)
++.+..
T Consensus 340 ~~~~~~ 345 (357)
T 4g56_B 340 HLPSEG 345 (357)
T ss_dssp ECC---
T ss_pred ECCCCC
Confidence 997543
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-44 Score=308.12 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=248.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++|++|+.||.|++||+.+++... . +.+|...|.+++|+|+ +++|++++.
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~----------~~~h~~~v~~~~~~~~--~~~l~s~~~ 94 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---T----------LDGHTGTIWSIDVDCF--TKYCVTGSA 94 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---E----------ECCCSSCEEEEEECTT--SSEEEEEET
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---h----------hhhcCCcEEEEEEcCC--CCEEEEEeC
Confidence 499999999999999999999999999999988764432 2 3346678999999998 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCCC---------ceeEeecC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDGG---------KCVSTVQP 185 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~~---------~~~~~~~~ 185 (366)
||.|++||+.+++.+..+. +.. .|.+++|+|+++.+ ++++.+ +.|++||+..... .....+..
T Consensus 95 dg~i~iwd~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l-~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK-SPV-PVKRVEFSPCGNYF-LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE-CSS-CEEEEEECTTSSEE-EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CCeEEEEECCCCcEEEEee-cCC-CeEEEEEccCCCEE-EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 9999999999999888887 444 89999999999987 788888 9999999983221 12223332
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
......+.+++|+|++ .++++++.||.|++||+++....+..+..|...|.+++|+ ++.+|++++.|+.|++||++++
T Consensus 172 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 2223389999999998 7999999999999999998547888889999999999999 9999999999999999999999
Q ss_pred ceeeeeecccceeeeEEEEEecCCCeEEEecCCC--------------eEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 265 RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN--------------QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
+.+..+. +...+..++++ |+++++++++.++ .+++||+.+++++..+ .+|...|+
T Consensus 251 ~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~v~ 319 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVIT--PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--------QGHFGPLN 319 (369)
T ss_dssp CEEEEEE-CSSCEEEEEEC--SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE--------ECCSSCEE
T ss_pred ceeeeec-CCCCceeEEec--CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe--------ecccCcEE
Confidence 9988887 55566666666 9999999999888 8999999999888766 46889999
Q ss_pred EEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 331 SVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+++|+| ++++|++++.||.|++|+++++
T Consensus 320 ~~~~s~---~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 320 TVAISP---QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEECT---TSSEEEEEETTSEEEEEEECHH
T ss_pred EEEECC---CCCEEEEEcCCCeEEEEECccc
Confidence 999999 8889999999999999999864
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.3e-44 Score=332.49 Aligned_cols=298 Identities=19% Similarity=0.290 Sum_probs=245.4
Q ss_pred cCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|.+.|++++|+|++ ++|+||+.||+|++|++....... ......+.+|...|.+++|+|+ +++|++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------~~~~~~~~~h~~~v~~v~~s~~--g~~l~sgs 449 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------GVAQRRLTGHSHFVEDVVLSSD--GQFALSGS 449 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------CEEEEEEECCSSCEEEEEECTT--SSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------ccccceecCCCCcEEEEEECCC--CCEEEEEe
Confidence 499999999999875 799999999999999997644321 1112245677789999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec--CCCCCCCeEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ--PSASRSAVCCVE 196 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~i~~~~ 196 (366)
.|++|++||+.+++....+.+|.. .|.+++|+|+++.+ ++++.|++|++||+. .. ....+. ..+|...|.+++
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQI-VSASRDRTIKLWNTL--GE-CKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCE-EEEETTSCEEEECTT--SC-EEEEECSSTTSCSSCEEEEE
T ss_pred CCCcEEEEECCCCcceeEEeCCCC-CEEEEEEeCCCCEE-EEEeCCCEEEEEECC--CC-cceeeccCCCCCCCcEEEEE
Confidence 999999999999999999999988 99999999999988 999999999999987 33 333332 246778999999
Q ss_pred EcCCCC-cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeeccc
Q 017773 197 FHPFGS-SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV 274 (366)
Q Consensus 197 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 274 (366)
|+|++. ..+++|+.|+.|++||+++. +....+.+|...|++++|+ ++++|++++.||.|++||+++++.+..+..+
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~- 602 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN- 602 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-
Confidence 999863 58999999999999999987 6788899999999999999 9999999999999999999999988887754
Q ss_pred ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccc-----------ccCCCCceeeEEEeeccCCCceE
Q 017773 275 NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT-----------AAGSERGFVSSVCWRRVGEDECT 343 (366)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~ 343 (366)
..+..++|+ |++.+|++++ ++.|++||+++++.+..+...... ....+...+++++|+| +|++
T Consensus 603 ~~v~~~~~s--p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp---dg~~ 676 (694)
T 3dm0_A 603 SVIHALCFS--PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA---DGST 676 (694)
T ss_dssp SCEEEEEEC--SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT---TSSE
T ss_pred CcEEEEEEc--CCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC---CCCE
Confidence 456666665 9998888775 466999999999887766432110 0111223478999999 8889
Q ss_pred EEEeCCCCcEEEEEecc
Q 017773 344 LVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 344 l~s~~~dg~i~iw~~~~ 360 (366)
|++|+.||.|+||++..
T Consensus 677 l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 677 LFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEEcCCCeEEEEeccC
Confidence 99999999999999864
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-43 Score=325.53 Aligned_cols=279 Identities=22% Similarity=0.386 Sum_probs=230.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...|++++|+|++++|++++.|+.|++|+... .....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------------~~~~~~~~h~~~v~~~~~~~~--~~~l~t~~~d 324 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------------QLLQTLTGHSSSVWGVAFSPD--GQTIASASDD 324 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------CEEEEECCCSSCEEEEEECTT--SSEEEEEETT
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------cEEEEEecCCCCeEEEEECCC--CCEEEEEeCC
Confidence 445555555555555555555555555555321 112234567789999999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+.|++||+.. ..+..+..|.. .|.+++|+|+++.+ ++++.|+.|++||.. ++.+..+. .|...|.+++|+|+
T Consensus 325 ~~i~~w~~~~-~~~~~~~~~~~-~v~~~~~s~~g~~l-~~~~~dg~v~~~~~~---~~~~~~~~--~~~~~v~~~~~s~d 396 (577)
T 2ymu_A 325 KTVKLWNRNG-QHLQTLTGHSS-SVWGVAFSPDGQTI-ASASDDKTVKLWNRN---GQLLQTLT--GHSSSVRGVAFSPD 396 (577)
T ss_dssp SCEEEEETTS-CEEEEECCCSS-CEEEEEECTTSSEE-EEEETTSEEEEEETT---CCEEEEEE--CCSSCEEEEEECTT
T ss_pred CeEEEEeCCC-CeeEEEeCCCC-CEEEEEECCCCCEE-EEEeCCCEEEEEcCC---CCEEEEec--CCCCCeEEEEECCC
Confidence 9999999865 45566777776 99999999999987 999999999999965 66777766 67779999999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNF 279 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (366)
+ ++|++++.|+.|++||... +.+..+.+|...|++++|+ ++++|++++.|+.|++||. +++.+..+.+|...+..
T Consensus 397 g-~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 397 G-QTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp S-SCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred C-CEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 8 7999999999999999643 5788889999999999999 8999999999999999995 67788899999999888
Q ss_pred EEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 280 VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++|+ |++++|++++.|+.|++||. +++.+..+ .+|...|++++|+| ++++|++++.||.|++||..
T Consensus 473 ~~~s--pd~~~las~~~d~~i~iw~~-~~~~~~~~--------~~h~~~v~~l~~s~---dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 473 VAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTL--------TGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEC--TTSCEEEEEETTSEEEEEET-TSCEEEEE--------ECCSSCEEEEEECT---TSSCEEEEETTSEEEEECTT
T ss_pred EEEc--CCCCEEEEEeCCCEEEEEcC-CCCEEEEE--------eCCCCCEEEEEEcC---CCCEEEEEECcCEEEEEeCC
Confidence 8777 99999999999999999995 57766655 56899999999999 88899999999999999975
Q ss_pred cc
Q 017773 360 KK 361 (366)
Q Consensus 360 ~~ 361 (366)
+.
T Consensus 539 ~~ 540 (577)
T 2ymu_A 539 GQ 540 (577)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-44 Score=314.00 Aligned_cols=281 Identities=14% Similarity=0.186 Sum_probs=243.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|.+.|++++|+|++++|++|+.||.|++|+.. +... ..+..|...|.+++|+|+ +++|++++.|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~-------------~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 170 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALL-------------NVLNFHRAPIVSVKWNKD--GTHIISMDVE 170 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEE-------------EEECCCCSCEEEEEECTT--SSEEEEEETT
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCee-------------eeccCCCccEEEEEECCC--CCEEEEEecC
Confidence 57799999999999999999999999999932 2211 123346678999999999 9999999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCc---------------eeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRR---------------VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP 185 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~ 185 (366)
+.|++||+.+++.+..+..+.. . +.+++|++++ .+ ++++.+|.|++||++ .++....+.
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~g~i~~~d~~--~~~~~~~~~- 244 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KF-VIPGPKGAIFVYQIT--EKTPTGKLI- 244 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EE-EEECGGGCEEEEETT--CSSCSEEEC-
T ss_pred CeEEEEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EE-EEEcCCCeEEEEEcC--CCceeeeec-
Confidence 9999999999998888877765 4 9999999974 34 888999999999999 677777766
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
.|...|.+++|+|++ .++++++.|+.|++||+++. +....+..|...+.+++|+ ++ ++++++.|+.|++||++++
T Consensus 245 -~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 245 -GHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp -CCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred -cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence 577799999999998 79999999999999999987 6788888899999999999 66 9999999999999999999
Q ss_pred ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc--------------------eEEEEecccccccCC
Q 017773 265 RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE--------------------PVWVHDFEPVTAAGS 324 (366)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~ 324 (366)
+.+..+..|...+..++++ |++++|++++.||.|++||+.+++ ++..+ .+
T Consensus 321 ~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 390 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRIS--QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY--------QS 390 (425)
T ss_dssp EEEEEEECTTCCEEEEEEC--TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE--------CC
T ss_pred cEeEecccCCccEEEEEEc--CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh--------cC
Confidence 9999999998888877777 999999999999999999999877 44443 55
Q ss_pred CCc--eeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 325 ERG--FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 325 ~~~--~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
|.. .|++++|+| ++++|++++.||.|++|++++
T Consensus 391 ~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 391 SQDNDYIFDLSWNC---AGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TTCCCCEEEEEECT---TSSEEEEEESSSCCEEEECCC
T ss_pred cccCCceEEEEccC---CCceEEEEecCceEEEEeecC
Confidence 655 999999999 888999999999999999864
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.1e-44 Score=310.17 Aligned_cols=299 Identities=13% Similarity=0.200 Sum_probs=242.0
Q ss_pred cCCCceEEEEECCC----CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCC--CcE
Q 017773 40 AVSDSIGVIEFDPS----DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTS--GRV 113 (366)
Q Consensus 40 ~h~~~i~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~ 113 (366)
+|.++|++++|+|+ ...+++++.++.|++|++.+..... .+..+. ...|...|++++|+|+.. +.+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---LLQSYV-----DADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE---EEEEEE-----CSCTTCCEEEEEEEECTTTCCEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE---eeeecc-----ccCCCCcEEEEEeccCCCCCCCE
Confidence 49999999999984 4566666678899999998766544 222221 112557899999999832 469
Q ss_pred EEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEecc-CCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CCCCCC
Q 017773 114 LGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK-GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SASRSA 191 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~ 191 (366)
|++|+.||.|++||+.+++.+..+..|.. .|.+++|+| ++..+ ++++.||.|++||++ +++....+.. ..|...
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLL-LSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEE-EEEETTSCEEEEETT--TTEEEEEECSTTSCSSC
T ss_pred EEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEE-EEEeCCCeEEEEEee--cCeEEEEecccccccCc
Confidence 99999999999999999999999998887 999999999 56655 999999999999999 7777777632 367789
Q ss_pred eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee----------------------------EeecccCcEEEEEEcC
Q 017773 192 VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL----------------------------VFDGHRKTVTYIRFLD 243 (366)
Q Consensus 192 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~ 243 (366)
|.+++|+|++ .++++++.||.|++||+++. +... ....|...|.+++|+
T Consensus 164 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 164 VLSADYDLLG-EKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred eeEEEECCCC-CEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 9999999998 79999999999999999865 2222 223389999999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCce--------------eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 244 VDTLVTAGTDGCLKLWNVNDSRV--------------IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
++++++++.|+.|++||+++++. +..+..|...+..+++++++++++|++|+.||.|++||+.+++
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 77999999999999999988744 7788889888998888833339999999999999999999876
Q ss_pred eEEEEecccccccCCC--CceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 310 PVWVHDFEPVTAAGSE--RGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+..... ..+.+| ...|++++|+| ++++|++++.||.|++||+.+
T Consensus 321 ~~~~~~----~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 321 PHKAKC----TTLTHHKCGAAIRQTSFSR---DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GGGCEE----EEECCTTCCSCEEEEEECT---TSSEEEEEETTSEEEEEEC--
T ss_pred Cccccc----eEEcccccCCceEEEEeCC---CCCeEEEEeCCCEEEEEEecC
Confidence 542110 011334 78999999999 888999999999999999853
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-44 Score=312.53 Aligned_cols=304 Identities=13% Similarity=0.160 Sum_probs=249.0
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCC---cE
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSG---RV 113 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~---~~ 113 (366)
.+|.++|++++|+| ++|++|+.||.|++|++.+...... ......+.+|..+|.+++|+|+ .++ .+
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-------CCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 35999999999999 7999999999999999987652110 1112234466788999999984 126 89
Q ss_pred EEEEcCCCcEEEEeCCCCce-----eEeeecCC----CCceeeEEec----cCCCceEEEecCCCcEEEeeCCCCC----
Q 017773 114 LGSGDYDGVVMEYDLEKKVP-----IFERDEHG----GRRVWSVDYS----KGDPVLGASGSDDGTMQMWDPRCDG---- 176 (366)
Q Consensus 114 l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~----~~~v~~i~~~----~~~~~l~~~~~~dg~v~~~d~~~~~---- 176 (366)
|++++.||.|++||+.+++. ...+..|. ...|.+++|+ |+++.++++++.||.|++||++ .
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~ 161 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH--PFADE 161 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE--SSSSH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC--ccccc
Confidence 99999999999999998876 77888774 2399999999 9998823999999999999998 4
Q ss_pred --CceeE-----eecC-----CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec---c---cCcEEE
Q 017773 177 --GKCVS-----TVQP-----SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG---H---RKTVTY 238 (366)
Q Consensus 177 --~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~~v~~ 238 (366)
.+.+. .+.. ..|...|.+++|+|++ ++++++.|+.|++||+++. +++..+.. | ...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccce
Confidence 34443 4432 3567799999999987 8999999999999999987 67888888 8 999999
Q ss_pred EEEc-CCCEEEEEeCC---CcEEEEecCCCceeeeeec-------------ccceeeeEEEEEecCCCeEEEecCCCeEE
Q 017773 239 IRFL-DVDTLVTAGTD---GCLKLWNVNDSRVIRTYKG-------------HVNNRNFVGLSVWRHGGLLGCGSETNQVF 301 (366)
Q Consensus 239 ~~~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 301 (366)
++|+ ++.+|++++.| +.|++||+++++++..+.. |...+..++|+ |++++|++++.||.|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSSSEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC--CCCCEEEEEeCCCeEE
Confidence 9999 89999999999 9999999999999999998 88888877777 9999999999999999
Q ss_pred EEEeecCceEEEEecccc-------------cccCCCCceeeEEEeeccCCCc----------eEEEEeCCCCcEEEEEe
Q 017773 302 VYDVRWGEPVWVHDFEPV-------------TAAGSERGFVSSVCWRRVGEDE----------CTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 302 iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~----------~~l~s~~~dg~i~iw~~ 358 (366)
+||+++++.+..+..... .....|...|++++|+| ++ ++|++++.||.|++|++
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK---KGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC---TTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc---ccccccccccccceEEEecCCCcEEEEEc
Confidence 999999998887752110 00112389999999999 76 79999999999999999
Q ss_pred ccc
Q 017773 359 KKK 361 (366)
Q Consensus 359 ~~~ 361 (366)
+++
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 875
No 33
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-44 Score=317.77 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=228.9
Q ss_pred CCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
|...|+||+|+| ++++||+|+.||.|+|||+.+..... . ..+.+|.+.|++++|+|. ++.+|++|+.
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---~--------~~~~gH~~~V~~l~f~p~-~~~~l~s~s~ 185 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---F--------IKGIGAGGSITGLKFNPL-NTNQFYASSM 185 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE---E--------ECCCSSSCCCCEEEECSS-CTTEEEEECS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee---E--------EEccCCCCCEEEEEEeCC-CCCEEEEEeC
Confidence 788899999999 56799999999999999998754322 1 123456789999999984 2889999999
Q ss_pred CCcEEEEeCCCCceeEeeecCC-CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHG-GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
||+|++||++++........+. ...+.+++|+|++..+ ++|+.||.|++||++ ++.+..+. .|...|.+++|+
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~dg~i~~wd~~---~~~~~~~~--~h~~~v~~v~~~ 259 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMD---GKELWNLR--MHKKKVTHVALN 259 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEE-EEECSSSBEEEEESS---SCBCCCSB--CCSSCEEEEEEC
T ss_pred CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEE-EEEeCCCcEeeeccC---cceeEEEe--cccceEEeeeec
Confidence 9999999998765433332222 2257899999998877 999999999999997 44455544 678899999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCC--CeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVD--PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
|++..++++|+.|+.|++||+++... ......+|...|++++|+ ++.+|++++.||.|++||+++++....+..|..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 99877999999999999999987632 223346799999999999 999999999999999999999988777766543
Q ss_pred e----eeeEEEEEecCCCeEEEec------------CCCeEEEEEeecCceEEEEecccccccCCCCceeeEE-EeeccC
Q 017773 276 N----RNFVGLSVWRHGGLLGCGS------------ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSV-CWRRVG 338 (366)
Q Consensus 276 ~----~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 338 (366)
. +..+...++|++.++++++ .++.|++||..+++.+..+. .+|...|.++ +|+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~~~v~s~~~fsp-- 410 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPESSGISSLNEFNP-- 410 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSCCCCCCEEEECT--
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCCCcEEEEEEECC--
Confidence 2 2223333446666665543 34679999999998887653 4578888887 6999
Q ss_pred CCceEEEEeCCCCcEEEEEecccCC
Q 017773 339 EDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 339 ~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
+|++|++|+ |+.|+||+++.++.
T Consensus 411 -dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 411 -MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp -TSSCEEEEC-SSEEEECCCC----
T ss_pred -CCCEEEEEc-CCcEEEEECCcCee
Confidence 888999886 88999999987653
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.3e-43 Score=298.94 Aligned_cols=272 Identities=20% Similarity=0.297 Sum_probs=233.8
Q ss_pred cccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecc
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
+..|.+.+..+.|++++..++.+..++.+ .|...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 34567778888888888888877766533 288899999999999999999999999999987643
Q ss_pred cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC
Q 017773 76 VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP 155 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 155 (366)
... .....+.+|.+.|.++.|+++ + .+++++.|++|++||+.+++.+..+.+|.. .|.+++|+|+++
T Consensus 131 ~~~---------~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 197 (340)
T 1got_B 131 GNV---------RVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTR 197 (340)
T ss_dssp BSC---------EEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSS
T ss_pred Ccc---------eeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCC
Confidence 221 112235567789999999986 5 488999999999999999999999999887 999999999988
Q ss_pred ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--cc
Q 017773 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HR 233 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~ 233 (366)
.+ ++|+.|+.|++||++ ++.+...+. +|...|.+++|+|++ .++++|+.|+.|++||+++. +.+..+.. +.
T Consensus 198 ~l-~sg~~d~~v~~wd~~--~~~~~~~~~--~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~ 270 (340)
T 1got_B 198 LF-VSGACDASAKLWDVR--EGMCRQTFT--GHESDINAICFFPNG-NAFATGSDDATCRLFDLRAD-QELMTYSHDNII 270 (340)
T ss_dssp EE-EEEETTSCEEEEETT--TCSEEEEEC--CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT-EEEEEECCTTCC
T ss_pred EE-EEEeCCCcEEEEECC--CCeeEEEEc--CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC-cEEEEEccCCcc
Confidence 76 999999999999999 778887776 677799999999998 89999999999999999986 44444432 33
Q ss_pred CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 234 KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 234 ~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
..|.+++|+ ++.+|++++.|+.|++||+.+++.+..+.+|...|.+++++ |++.+|++|+.|+.|++||
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT--DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc--CCCCEEEEEcCCccEEecC
Confidence 579999999 99999999999999999999999999999999998888877 9999999999999999996
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-43 Score=310.14 Aligned_cols=315 Identities=14% Similarity=0.168 Sum_probs=248.5
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCC-EEEEeecCCeEEEEEc----eeccccc---ceeeeecCce
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDS-VFATGGIARKIRIYNI----KSVLVDH---PVVAVVDHSK 88 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~----~~~~~~~---~~~~~~~~~~ 88 (366)
......|+.+........ ..|.++|++++|+|+++ +||+|+.||.|++|++ .++.... ....+.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKE----IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA 99 (425)
T ss_dssp ----------CCCEECEE----EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC
T ss_pred ccccccccchhhhhheee----eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc
Confidence 444456666544333222 12679999999999999 9999999999999999 6655211 0011111111
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
......+|...|++++|+|+ +++|++++.||.|++|| .+++.+..+..|.. .|.+++|+|+++.+ ++++.|+.|+
T Consensus 100 ~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d~~i~ 174 (425)
T 1r5m_A 100 LSASSGKTTNQVTCLAWSHD--GNSIVTGVENGELRLWN-KTGALLNVLNFHRA-PIVSVKWNKDGTHI-ISMDVENVTI 174 (425)
T ss_dssp CC------CBCEEEEEECTT--SSEEEEEETTSCEEEEE-TTSCEEEEECCCCS-CEEEEEECTTSSEE-EEEETTCCEE
T ss_pred ccccccCCCCceEEEEEcCC--CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc-cEEEEEECCCCCEE-EEEecCCeEE
Confidence 11122336779999999999 99999999999999999 67778888888887 99999999999887 8999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCC---------------eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSA---------------VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR 233 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 233 (366)
+||+. +++.+..+.... .. +.+++|+|++ .+++++.++.|++||+++. +.+..+..|.
T Consensus 175 iwd~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~ 247 (425)
T 1r5m_A 175 LWNVI--SGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEK-TPTGKLIGHH 247 (425)
T ss_dssp EEETT--TTEEEEEECCC-----------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCS-SCSEEECCCS
T ss_pred EEECC--CCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCC-ceeeeeccCC
Confidence 99998 777777776432 23 8999999975 6888999999999999987 6778888999
Q ss_pred CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 234 KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 234 ~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
..|.+++|+ ++++|++++.|+.|++||+++++.+..+..|...+..++++ |++ ++++++.|+.|++||+++++.+.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV--GDD-KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE--TTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC--CCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence 999999999 88999999999999999999999999999999888888777 888 99999999999999999998877
Q ss_pred EEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 313 VHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
.+ ..|...|.+++|+| ++++|++++.||.|++|++++.
T Consensus 325 ~~--------~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 325 LS--------IVDGVPIFAGRISQ---DGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EE--------ECTTCCEEEEEECT---TSSEEEEEETTSCEEEEECHHH
T ss_pred ec--------ccCCccEEEEEEcC---CCCEEEEEECCCeEEEEECCCC
Confidence 66 34778999999999 8889999999999999999764
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.8e-43 Score=303.60 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=234.4
Q ss_pred cCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEec-CCCCcEEEEE
Q 017773 40 AVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKP-GTSGRVLGSG 117 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 117 (366)
+|.+.|++++|+|++ ++|++|+.||.|++||+.+..... .+. ..+|...|.+++|+| + +.+|+++
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~--------~~~h~~~v~~~~~~~~~--~~~l~s~ 137 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---FIQ--------GMGPGDAITGMKFNQFN--TNQLFVS 137 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---EEC--------CCSTTCBEEEEEEETTE--EEEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---eee--------cCCcCCceeEEEeCCCC--CCEEEEE
Confidence 489999999999999 999999999999999998755432 111 124667899999999 5 7999999
Q ss_pred cCCCcEEEEeCCCCceeEeeecCCC--CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 118 DYDGVVMEYDLEKKVPIFERDEHGG--RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 118 ~~dg~i~iw~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
+.|+.|++||+.+ .....+..+.. ..|.+++|+|+++.+ ++++.|+.|++||++ ++.+..+. .|...|.++
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~---~~~~~~~~--~h~~~v~~~ 210 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQML-ATGDSTGRLLLLGLD---GHEIFKEK--LHKAKVTHA 210 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEE-EEEETTSEEEEEETT---SCEEEEEE--CSSSCEEEE
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEE-EEECCCCCEEEEECC---CCEEEEec--cCCCcEEEE
Confidence 9999999999986 44555554441 379999999999877 999999999999996 56667666 677799999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCC---CCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMV---DPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
+|+|++..++++|+.|+.|++||+++.. ..+..+ +|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 9999984499999999999999999732 344444 699999999997 6889999999999999999999887777
Q ss_pred ecccce-------e--------eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 271 KGHVNN-------R--------NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 271 ~~~~~~-------~--------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
..|... + ..+.+.++|++++ +++.|+.|++||+.+++.+..+.. ..|...+..++|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~------~~~~~~~~~~~~s 361 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD------PNAAGIISLNKFS 361 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB------TTBCSCCCEEEEC
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC------CCCCceEEEEEEe
Confidence 755321 1 1223344477777 888999999999999998877642 2256778888999
Q ss_pred ccCCCceEEEEeCCCCcEEEEEecc
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
| ++++|++++ ||.|++|++++
T Consensus 362 ~---~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 362 P---TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp T---TSSEEEEEE-TTEEEEEECC-
T ss_pred c---CccEEEEec-CCcEEEEecCC
Confidence 9 888999997 99999999875
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-43 Score=309.24 Aligned_cols=292 Identities=16% Similarity=0.170 Sum_probs=235.9
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
..+....|+|++++|++|+.||.|++||+.+..... .+.+|...|++++|+|+ +++|++++.|+.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~ 162 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-------------IDQAHVSEITKLKFFPS--GEALISSSQDMQ 162 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-------------ETTSSSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-------------ecccccCccEEEEECCC--CCEEEEEeCCCe
Confidence 455566889999999999999999999987643321 23456789999999999 999999999999
Q ss_pred EEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC-CCC------------
Q 017773 123 VMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS-ASR------------ 189 (366)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~~~------------ 189 (366)
|++||+.+++.+..+..|.. .|.+++|+|+++.+ ++++.|+.|++||++ +++.+..+... .+.
T Consensus 163 i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTLIGHRA-TVTDIAIIDRGRNV-LSASLDGTIRLWECG--TGTTIHTFNRKENPHDGVNSIALFVGT 238 (420)
T ss_dssp EEEEETTTCCCCEEEECCSS-CEEEEEEETTTTEE-EEEETTSCEEEEETT--TTEEEEEECBTTBTTCCEEEEEEEECC
T ss_pred EEEEeCCCCcCceEEcCCCC-cEEEEEEcCCCCEE-EEEcCCCcEEEeECC--CCceeEEeecCCCCCCCccEEEEecCC
Confidence 99999999999999998887 99999999998887 899999999999999 77777777642 222
Q ss_pred ---------CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC-EEEEEeCCCcEEE
Q 017773 190 ---------SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD-TLVTAGTDGCLKL 258 (366)
Q Consensus 190 ---------~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i 258 (366)
..+.+++|+|++ .++++|+.||.|++||+++..........|...|.+++|+ ++. +|++++.||.|++
T Consensus 239 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 239 DRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp CSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred cceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 344555567887 8999999999999999998843444445688999999999 777 9999999999999
Q ss_pred EecCCCc-eeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEE-EecccccccCCCCceeeEEEee
Q 017773 259 WNVNDSR-VIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV-HDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 259 wd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
||+++++ ++..+.. |...+..+.+ +++++|++++.|+.|++|++...+.... ...........|...|.+++|+
T Consensus 318 wd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 394 (420)
T 3vl1_A 318 WDLRSPECPVGEFLINEGTPINNVYF---AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYV 394 (420)
T ss_dssp EETTCTTSCSEEEEESTTSCEEEEEE---ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEE
T ss_pred EEcCCCcCchhhhhccCCCCceEEEe---CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEc
Confidence 9999874 4777777 5555655533 6889999999999999999987432221 1122223346788999999999
Q ss_pred ccCCCce---EEEEeCCCCcEEEEEecc
Q 017773 336 RVGEDEC---TLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 336 ~~~~~~~---~l~s~~~dg~i~iw~~~~ 360 (366)
| +++ .|++++.+|.+.+|+++.
T Consensus 395 ~---~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 395 S---DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp C---CSSSSCEEEEEETTTEEEEEESCC
T ss_pred c---CCCCcceEEEEcCCceEEEEeccC
Confidence 9 666 677777899999999875
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-44 Score=312.10 Aligned_cols=295 Identities=14% Similarity=0.158 Sum_probs=226.0
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+.++|++++|+|++++||+|+.||.|++|++.+... .....+.+|...|.+++|+|+ +++|++++.|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d 76 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----------KHARTFSDHDKIVTCVDWAPK--SNRIVTCSQD 76 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------EECCCBCCCSSCEEEEEECTT--TCCEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------EEEEEEecCCceEEEEEEeCC--CCEEEEEeCC
Confidence 577899999999999999999999999999986520 111134456788999999999 9999999999
Q ss_pred CcEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc---eeEeecCCCCCCCeEE
Q 017773 121 GVVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK---CVSTVQPSASRSAVCC 194 (366)
Q Consensus 121 g~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~---~~~~~~~~~~~~~i~~ 194 (366)
+.|++||+.+++ ....+..|.. .|.+++|+|+++.+ ++++.|+.|++||++ ..+ ....+.. .|...|.+
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~-~h~~~v~~ 151 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNR-AATFVRWSPNEDKF-AVGSGARVISVCYFE--QENDWWVSKHLKR-PLRSTILS 151 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSS-CEEEEECCTTSSCC-EEEESSSCEEECCC-------CCCCEEECS-SCCSCEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCC-ceEEEEECCCCCEE-EEEecCCeEEEEEEC--CcccceeeeEeec-ccCCCeEE
Confidence 999999999876 6666777777 99999999999888 999999999999998 444 3455542 27789999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCC-----------------CCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcE
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKM-----------------VDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCL 256 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i 256 (366)
++|+|++ .++++++.|+.|++||++.. .+++..+ .|...|.+++|+ ++++|++++.|+.|
T Consensus 152 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9999998 89999999999999998632 1234445 899999999999 89999999999999
Q ss_pred EEEecCCCce----eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce--EEEEe---------------
Q 017773 257 KLWNVNDSRV----IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP--VWVHD--------------- 315 (366)
Q Consensus 257 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--------------- 315 (366)
++||+++++. +..+.+|...+..++|+ |++++|++|+.++.+ +|+...... ...+.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWA--NESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTG 306 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEE--ETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEc--CCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccc
Confidence 9999999987 88899999988888877 999999999877666 666542210 00000
Q ss_pred -----------------c----------ccccccCCCCceeeEEEeeccCC-CceEEEEeCCCCcEEEEEe
Q 017773 316 -----------------F----------EPVTAAGSERGFVSSVCWRRVGE-DECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 316 -----------------~----------~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~s~~~dg~i~iw~~ 358 (366)
+ ........|...|+++++.+..+ +...|+|+|.||.|++||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 01112234999999999876221 1126999999999999985
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=311.68 Aligned_cols=292 Identities=13% Similarity=0.238 Sum_probs=245.1
Q ss_pred CCCceEEEEECCCCC-EEEEe----------ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC
Q 017773 41 VSDSIGVIEFDPSDS-VFATG----------GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT 109 (366)
Q Consensus 41 h~~~i~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (366)
+...|.+++|+|+++ +|++| +.||.|++|++.+........ ...|...|.+++|+|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~- 78 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-----------SLQVDSKFNDLDWSHN- 78 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-----------CCCCSSCEEEEEECSS-
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-----------EEecCCceEEEEECCC-
Confidence 455789999999987 99999 889999999998765322111 1234578999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCC----CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc------e
Q 017773 110 SGRVLGSGDYDGVVMEYDLEK----KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK------C 179 (366)
Q Consensus 110 ~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~------~ 179 (366)
+.+|++++.||.|++||+.. .+....+..|.. .|.+++|+|++..++++++.|+.|++||+. ..+ .
T Consensus 79 -~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~ 154 (416)
T 2pm9_A 79 -NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTESPSNYT 154 (416)
T ss_dssp -SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTT--TTSSCTTTCC
T ss_pred -CCeEEEEccCCeEEEeecccccccccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECC--CCcccccccc
Confidence 99999999999999999987 357777888887 999999999844445999999999999998 443 2
Q ss_pred eEee-cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc------cCcEEEEEEc-CC-CEEEEE
Q 017773 180 VSTV-QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH------RKTVTYIRFL-DV-DTLVTA 250 (366)
Q Consensus 180 ~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~-~~-~~l~~~ 250 (366)
...+ ....|...|.+++|+|++..++++++.|+.|++||+++. +.+..+..+ ...+.+++|+ ++ .+++++
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 2221 234677899999999995589999999999999999987 566777665 7899999999 54 689999
Q ss_pred eCCC---cEEEEecCCC-ceeeeee-cccceeeeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCC
Q 017773 251 GTDG---CLKLWNVNDS-RVIRTYK-GHVNNRNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 251 ~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
+.|+ .|++||++++ .++..+. +|...+..++|+ | ++++|++++.||.|++||+++++++..+ .+
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------~~ 303 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC--HQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------PA 303 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC--SSCSSCEEEEESSSEEEEECSSSCCEEEEE--------EC
T ss_pred ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC--CCCCCeEEEEeCCCCEEEeeCCCCccceee--------cC
Confidence 9998 9999999986 6778888 898888888777 8 8999999999999999999999888776 45
Q ss_pred CCceeeEEEeeccCCCc-eEEEEeCCCCcEEEEEecccC
Q 017773 325 ERGFVSSVCWRRVGEDE-CTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~ 362 (366)
|...|.+++|+| ++ .+|++++.||.|++|++....
T Consensus 304 ~~~~v~~~~~s~---~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RGNWCFKTKFAP---EAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSCCCCEEECT---TCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCceEEEEECC---CCCCEEEEEecCCcEEEEEccCCC
Confidence 889999999999 76 799999999999999997643
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=298.22 Aligned_cols=299 Identities=18% Similarity=0.300 Sum_probs=236.4
Q ss_pred cCCCceEEEEECCCCC-EEEEeec---CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC-CCcEE
Q 017773 40 AVSDSIGVIEFDPSDS-VFATGGI---ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT-SGRVL 114 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~-~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l 114 (366)
+|.+.|++++|+|+++ ++++|+. ||.|++|++.+++... ....+|..+|.+++|+|+. ++.+|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------------LREIEKAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------------EEEEEESSCEEEEECTTCCTTTCCE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------------eeeecccCcEEEEEEcCCCCCCceE
Confidence 3899999999999996 5556665 8999999998754322 1122456789999999971 14899
Q ss_pred EEEcCCCcEEEEeCCCCc-eeEeeecCCCCceeeEE------eccCCCceEEEecCCCcEEEeeCCCCCCc-eeEeecCC
Q 017773 115 GSGDYDGVVMEYDLEKKV-PIFERDEHGGRRVWSVD------YSKGDPVLGASGSDDGTMQMWDPRCDGGK-CVSTVQPS 186 (366)
Q Consensus 115 ~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~i~------~~~~~~~l~~~~~~dg~v~~~d~~~~~~~-~~~~~~~~ 186 (366)
++|+.||.|++||+.+++ .+..+..|.. .|.+++ |+|+++.+ ++++.||.|++||++ ..+ ....+...
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l-~~~~~d~~i~vwd~~--~~~~~~~~~~~~ 159 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEI-VTGSRDGTVKVWDPR--QKDDPVANMEPV 159 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEE-EEEETTSCEEEECTT--SCSSCSEEECCC
T ss_pred EEecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEE-EEEeCCCeEEEEeCC--CCCCcceecccc
Confidence 999999999999999887 8888888887 899995 56778877 999999999999999 444 55665532
Q ss_pred C--CCCCeEEEE----EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc----CCCEEEEEeCCCcE
Q 017773 187 A--SRSAVCCVE----FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL----DVDTLVTAGTDGCL 256 (366)
Q Consensus 187 ~--~~~~i~~~~----~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i 256 (366)
. ....+.+++ |+|++ .++++++.|+.|++||+++. +. .....|...|.+++|+ ++.+|++++.||.|
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 1 244888998 77887 89999999999999999987 33 4456688999999998 58899999999999
Q ss_pred EEEecCCCceeeeee-----cccceeeeEEEEEecCCC-eEEEecCCCeEEEEEeecCceEEEEe-----------cccc
Q 017773 257 KLWNVNDSRVIRTYK-----GHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWGEPVWVHD-----------FEPV 319 (366)
Q Consensus 257 ~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~ 319 (366)
++||+++++++..+. +|...+..++++ |++. +|++++.||.|++||++++....... ....
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL--PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEE--TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEEC--CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 999999887766665 898888888877 9998 89999999999999998754331100 0011
Q ss_pred cccCCCCceeeEEEeeccCCCceEEE-EeCCCCcEEEEEecccC
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLV-AGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~ 362 (366)
....+|...|++++|+| ++++|+ +++.||.|++|++.+..
T Consensus 315 ~~~~~~~~~v~~~~~s~---~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 315 QNVTLSTQPISSLDWSP---DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSSCEEEEEECS---SSTTEEEEEETTSEEEEEEECC--
T ss_pred eccccCCCCeeEEEEcC---CCCeEEEEecCCCcEEEEECCCcc
Confidence 22356899999999999 777888 89999999999998743
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.5e-42 Score=295.02 Aligned_cols=276 Identities=21% Similarity=0.302 Sum_probs=236.5
Q ss_pred CcccccccceeeeeecCCCceeeecCCCCcc---------------CCCceEEEEECCCCCEEEEeecCCeEEEEEceec
Q 017773 10 PQAETTNERARCEWDFNLRTTVSSSSSPNAA---------------VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSV 74 (366)
Q Consensus 10 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---------------h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~ 74 (366)
.+..|.+.+..+.|++++..++++..++.+. |...|.+++|+|+|++|++|+.|+.+++|++...
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 3456778888899999888888888776432 7788999999999999999999999999998754
Q ss_pred ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC-
Q 017773 75 LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG- 153 (366)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~- 153 (366)
.... .......+.+|...|.+++|+|+ +..|++++.|++|++||+++++.+..+.+|.. .|.+++|+|+
T Consensus 139 ~~~~-------~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~~~~~~~~ 208 (354)
T 2pbi_B 139 KNEN-------MAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGA-DVLCLDLAPSE 208 (354)
T ss_dssp TTCC-------SGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECCCS
T ss_pred cccc-------ccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-CeEEEEEEeCC
Confidence 3211 01122345577889999999999 99999999999999999999999999999987 8999999885
Q ss_pred -CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc
Q 017773 154 -DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH 232 (366)
Q Consensus 154 -~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 232 (366)
+..+ ++|+.||.|++||++ +++++..+. .|...|.+++|+|++ .++++|+.|++|++||++.. +.+..+..+
T Consensus 209 ~g~~l-~sgs~Dg~v~~wd~~--~~~~~~~~~--~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~ 281 (354)
T 2pbi_B 209 TGNTF-VSGGCDKKAMVWDMR--SGQCVQAFE--THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRAD-REVAIYSKE 281 (354)
T ss_dssp SCCEE-EEEETTSCEEEEETT--TCCEEEEEC--CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred CCCEE-EEEeCCCeEEEEECC--CCcEEEEec--CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-cEEEEEcCC
Confidence 4455 999999999999999 788888776 677899999999998 89999999999999999986 444444433
Q ss_pred --cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 233 --RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 233 --~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
...+.+++|+ ++.+|++++.|+.|++||+.+++.+..+.+|...|..++|+ |++++|++|+.|+.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s--pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS--PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC--TTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC--CCCCEEEEEcCCCCEEecC
Confidence 3578999999 99999999999999999999999999999999998888877 9999999999999999995
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-43 Score=309.23 Aligned_cols=313 Identities=13% Similarity=0.167 Sum_probs=238.2
Q ss_pred eeecCCCceeeecCCCCccCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCce
Q 017773 22 EWDFNLRTTVSSSSSPNAAVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKL 100 (366)
Q Consensus 22 ~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (366)
.|++.+..+. ... .+|.+.|++++|+| ++++||+|+.||.|++||+.+....... .......|..+|
T Consensus 47 ~w~~~g~~~~-~~~---~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--------~~~~~~~h~~~v 114 (437)
T 3gre_A 47 MGNLRGKLIA-TLM---ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY--------SSSLTYDCSSTV 114 (437)
T ss_dssp GGGCCCCEEE-EEC---TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC--------SCSEEEECSSCE
T ss_pred cccccceEEe-eec---cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc--------ceeeeccCCCCE
Confidence 4776654443 221 23899999999999 9999999999999999999872211100 001112467889
Q ss_pred eEEEEecCCCCcEEEEEcCCCcEEEEeCC---CCceeEeeecC-----------CCCceeeEE--eccCCCceEEEecCC
Q 017773 101 SSLKWKPGTSGRVLGSGDYDGVVMEYDLE---KKVPIFERDEH-----------GGRRVWSVD--YSKGDPVLGASGSDD 164 (366)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~-----------~~~~v~~i~--~~~~~~~l~~~~~~d 164 (366)
.+++|+|+ +.+|++++.||.|++||++ .++.......+ ....+.++. +++++..+ ++++.|
T Consensus 115 ~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d 191 (437)
T 3gre_A 115 TQITMIPN--FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL-VALTNL 191 (437)
T ss_dssp EEEEECTT--SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE-EEEETT
T ss_pred EEEEEeCC--CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE-EEEeCC
Confidence 99999998 9999999999999999995 45444433322 122555555 44566666 999999
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-cccCcEEEEEEc-
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-GHRKTVTYIRFL- 242 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~- 242 (366)
+.|++||++ +++.+..+....|...|.+++|+|++ .++++|+.||.|++||+++. +++..+. .|..+|.+++|+
T Consensus 192 ~~i~iwd~~--~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 192 SRVIIFDIR--TLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp SEEEEEETT--TCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECT
T ss_pred CeEEEEeCC--CCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEecc
Confidence 999999999 78888888754477799999999998 89999999999999999986 6677665 788899999664
Q ss_pred ----CCCEEEEEeCCCcEEEEecCCCceeeeeeccc--------------------------ceeeeEEEEEecCCCeEE
Q 017773 243 ----DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--------------------------NNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 243 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~ 292 (366)
++.+|++++.||.|++||+++++.+..+.+|. ..+.+++++ ++++|+
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~---~~~~l~ 344 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS---NDKILL 344 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE---TTEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC---CceEEE
Confidence 46699999999999999999998888877553 334444444 668999
Q ss_pred EecCCCeEEEEEeecCceEEEEecc-----------------------------cccccCCCCceeeEEEeeccCCCceE
Q 017773 293 CGSETNQVFVYDVRWGEPVWVHDFE-----------------------------PVTAAGSERGFVSSVCWRRVGEDECT 343 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~ 343 (366)
+|+.|+.|++||+.+++....+.-. .......|...|++++|++.. ++.+
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~-~~~~ 423 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD-ETPL 423 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS-SSEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC-CceE
Confidence 9999999999999988776655321 001123489999999999931 2779
Q ss_pred EEEeCCCCcEEEEE
Q 017773 344 LVAGGSDGLLHVFV 357 (366)
Q Consensus 344 l~s~~~dg~i~iw~ 357 (366)
|++|+.||.|+||+
T Consensus 424 l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 424 LVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEcCCceEEEeC
Confidence 99999999999995
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-42 Score=288.50 Aligned_cols=279 Identities=22% Similarity=0.276 Sum_probs=236.4
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++| |++++|++|+.||.|++||+.+..... .+..|...|.+++|+|+ +.+|++++.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~-------------~~~~~~~~v~~~~~~~~--~~~l~~~~~ 79 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT-------------VVYTGQGFLNSVCYDSE--KELLLFGGK 79 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE-------------EEEECSSCEEEEEEETT--TTEEEEEET
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE-------------EeecCCccEEEEEECCC--CCEEEEecC
Confidence 49999999999 999999999999999999987643322 23445678999999999 999999999
Q ss_pred CCcEEEEeCCCC---ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 120 DGVVMEYDLEKK---VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 120 dg~i~iw~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
||.|++|++... +....+..|.. .|.+++|. ++.+ ++++.||.|++||. .+....+. .|...+.+++
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~--~~~l-~~~~~d~~i~~~d~----~~~~~~~~--~~~~~v~~~~ 149 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTLIGHQG-NVCSLSFQ--DGVV-ISGSWDKTAKVWKE----GSLVYNLQ--AHNASVWDAK 149 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEECCCSS-CEEEEEEE--TTEE-EEEETTSEEEEEET----TEEEEEEE--CCSSCEEEEE
T ss_pred CCeEEEEEeeecCCCCcccchhhccc-CEEEEEec--CCEE-EEEeCCCCEEEEcC----CcEEEecc--cCCCceeEEE
Confidence 999999998764 55677777777 99999993 5555 99999999999992 45666665 5677999999
Q ss_pred EcC-CCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 197 FHP-FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 197 ~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
|.| ++ ..+++++.|+.|++||.. +....+.. |...+.+++|+ ++. +++++.||.|++||+++++++..+.+|
T Consensus 150 ~~~~~~-~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 150 VVSFSE-NKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEETTT-TEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EccCCC-CEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 998 55 899999999999999943 45566666 89999999999 555 999999999999999999999999999
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
...+..++++ |++ .|++++.||.|++||+++++....+ ..|...|.+++|+| +++ +++++.||.|
T Consensus 225 ~~~i~~~~~~--~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~---~~~-~~~~~~dg~i 289 (313)
T 3odt_A 225 ESFVYCIKLL--PNG-DIVSCGEDRTVRIWSKENGSLKQVI--------TLPAISIWSVDCMS---NGD-IIVGSSDNLV 289 (313)
T ss_dssp SSCEEEEEEC--TTS-CEEEEETTSEEEEECTTTCCEEEEE--------ECSSSCEEEEEECT---TSC-EEEEETTSCE
T ss_pred CceEEEEEEe--cCC-CEEEEecCCEEEEEECCCCceeEEE--------eccCceEEEEEEcc---CCC-EEEEeCCCcE
Confidence 9998888877 888 6889999999999999999888776 34678999999999 776 6678899999
Q ss_pred EEEEecccCCC
Q 017773 354 HVFVGKKKPLS 364 (366)
Q Consensus 354 ~iw~~~~~~l~ 364 (366)
++|+++++.+.
T Consensus 290 ~iw~~~~~~~~ 300 (313)
T 3odt_A 290 RIFSQEKSRWA 300 (313)
T ss_dssp EEEESCGGGCC
T ss_pred EEEeCCCCcee
Confidence 99999886543
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=297.44 Aligned_cols=321 Identities=19% Similarity=0.242 Sum_probs=249.3
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecC
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTP 97 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (366)
....|+.+........ .+|.+.|++++|+| ++++||+|+.||.|++|++.+.....................+|.
T Consensus 24 ~~~v~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 24 TRRVLGLELNKDRDVE----RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHTEEECTTEEEC----CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cceeeccccCcceeee----eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3445555544333222 23999999999999 999999999999999999998766543221111111111123578
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC--ceEEEecCCCcEEEeeCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP--VLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~~dg~v~~~d~~~~ 175 (366)
..|.+++|+|+ ++.+|++++.||.|++||+.+++....+... . .+.++.+.+.+. .++++++.|+.|++||++
T Consensus 100 ~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-- 174 (408)
T 4a11_B 100 YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-- 174 (408)
T ss_dssp SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS--
T ss_pred CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC--
Confidence 89999999993 2789999999999999999999888877643 3 899999998644 244999999999999999
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe---------------ecccCcEEEEE
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF---------------DGHRKTVTYIR 240 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~ 240 (366)
+++.+..+. .|...|.+++|+|++..++++|+.||.|++||+++.......+ ..|...|.+++
T Consensus 175 ~~~~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 175 SGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSCCCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred Ccceeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 677777776 6777999999999985579999999999999998875455444 57889999999
Q ss_pred Ec-CCCEEEEEeCCCcEEEEecCCCceeeeeecccce----eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 241 FL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN----RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
|+ ++++|++++.||.|++||+++++....+..+... .....+.. ..+..+++++.|+.|++||+.+++++..+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-GCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-SSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec-CCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 99 8999999999999999999998776555432211 11112221 34566777778999999999999988776
Q ss_pred cccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 316 FEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
.+|...|++++|+| ++++|++++.||.|++|++++.+
T Consensus 331 -------~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 331 -------KGHYKTVDCCVFQS---NFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp -------CCCSSCEEEEEEET---TTTEEEEEETTSCEEEEEECC--
T ss_pred -------ccCCCeEEEEEEcC---CCCEEEEECCCCeEEEEeCCCCC
Confidence 56889999999999 88899999999999999998754
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=290.99 Aligned_cols=254 Identities=17% Similarity=0.267 Sum_probs=203.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++||+|+.|+.|++|++...... ....+.+|..+|.+++|+|+ +++|++|+.
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~-----------~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~ 125 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE-----------CVTTLEGHENEVKSVAWAPS--GNLLATCSR 125 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE-----------EEEEECCCSSCEEEEEECTT--SSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE-----------EEEEccCCCCCceEEEEeCC--CCEEEEEEC
Confidence 49999999999999999999999999999998754211 11234567789999999999 999999999
Q ss_pred CCcEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 120 DGVVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 120 dg~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
|++|++||+..+. .+..+..|.. .|.+++|+|+++.+ ++++.|+.|++||.+ .++........+|...|.+++
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l-~s~s~d~~i~~w~~~--~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELL-ASASYDDTVKLYREE--EDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCE-EEEETTSCEEEEEEE--TTEEEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEE-EEEeCCCcEEEEEec--CCCEEEEEEecCCCCceEEEE
Confidence 9999999998764 3456667776 89999999999887 999999999999998 554333333347888999999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCC--------------CeeEeec-ccCcEEEEEEc-CCCEEEEEeCCCcEEEEe
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVD--------------PVLVFDG-HRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd 260 (366)
|+|++ .+|++|+.|++|++||...... .+..+.+ |...|.+++|+ ++..|++++.|+.|++|+
T Consensus 202 ~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 202 FDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp ECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 99998 8999999999999999754311 1223333 88899999999 889999999999999999
Q ss_pred cCCCc----e-----eeeeecccceeeeEEEEEecCC-CeEEEecCCCeEEEEEeecCceEEE
Q 017773 261 VNDSR----V-----IRTYKGHVNNRNFVGLSVWRHG-GLLGCGSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 261 ~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 313 (366)
..... + .....+|...|.+++|+ |++ .+|++|+.||.|++|++.+++....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~--p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN--PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC--SSSTTEEEEEETTSCEEEEEECC------
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEe--CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 87542 1 12235788888888887 887 5999999999999999998876543
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-42 Score=299.98 Aligned_cols=284 Identities=20% Similarity=0.262 Sum_probs=234.0
Q ss_pred cccccccceeeeeecCCCceeeecCCCCcc---------------CCCceEEEEECCCCCEEEEeecCCeEEEEEceecc
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNAA---------------VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---------------h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
+..|.+.+..+.|++++..++++..++.+. |...|.+++|+|+|++||+|+.|+.+++|++.+..
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 446777888888888888888888776432 88999999999999999999999999999997643
Q ss_pred cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEee-----ecCCCCceeeEEe
Q 017773 76 VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFER-----DEHGGRRVWSVDY 150 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~v~~i~~ 150 (366)
... +.......+.+|.+.|.++.|.|+ .+..|++|+.|++|++||+.+++.+..+ .+|.. .|.+++|
T Consensus 142 ~~~------~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~~~~ 213 (380)
T 3iz6_a 142 DRD------GNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA-DVLSLSI 213 (380)
T ss_dssp SCC------CSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS-CEEEEEE
T ss_pred ccc------CCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc-CeEEEEe
Confidence 211 111122345677889999999997 2567999999999999999999887766 45655 8999999
Q ss_pred ccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee
Q 017773 151 SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 151 ~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
++.+..++++|+.|+.|++||++. ..+.+..+. +|...|.+++|+|++ .+|++|+.|++|++||++++ +.+..+.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~-~~~~~~~~~--~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~-~~~~~~~ 288 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRI-TSRAVRTYH--GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTG-HQLQVYN 288 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTT-TCCCCEEEC--CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTT-EEEEEEC
T ss_pred ecCCCCEEEEEECCCeEEEEECCC-CCcceEEEC--CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCC-cEEEEec
Confidence 885555559999999999999972 235566665 688899999999998 89999999999999999987 5555554
Q ss_pred ccc-------CcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee----ecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 231 GHR-------KTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY----KGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 231 ~~~-------~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
.+. ..+++++|+ ++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+ |++.+|++|+.|+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--SDGSALCTGSWDK 366 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC--SSSSEEEEECTTS
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC--CCCCEEEEeeCCC
Confidence 432 348999999 9999999999999999999999888777 6788888888887 9999999999999
Q ss_pred eEEEEEeecCc
Q 017773 299 QVFVYDVRWGE 309 (366)
Q Consensus 299 ~i~iwd~~~~~ 309 (366)
.|++|++...+
T Consensus 367 ~i~iW~~~~~~ 377 (380)
T 3iz6_a 367 NLKIWAFSGHR 377 (380)
T ss_dssp CEEEEECCSSS
T ss_pred CEEEEecCCCc
Confidence 99999987654
No 47
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-42 Score=295.23 Aligned_cols=292 Identities=12% Similarity=0.062 Sum_probs=221.4
Q ss_pred CCceEEEEECCCCCEEEEeecC-------CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE
Q 017773 42 SDSIGVIEFDPSDSVFATGGIA-------RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 114 (366)
.-||++++|+||+++||+|+.+ +.|++|++.......... +... ....+..|...|.++++.+ ..+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-~~~~--~~~~l~~~~~~v~s~~~~~----~~~ 86 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-FHIL--SEFALEDNDDSPTAIDASK----GII 86 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-EEEE--EEEECCTTSCCCCEEEEET----TEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-eeee--eEEEccCCCCceEEEEeCC----CEE
Confidence 4589999999999999998753 359999987654322100 0000 0112445666788887764 455
Q ss_pred EEE-----------cCCCcEEEEeCCCCceeEe----ee-----cCCCCceeeEEeccCCCceE-EEecCCCcEEEeeCC
Q 017773 115 GSG-----------DYDGVVMEYDLEKKVPIFE----RD-----EHGGRRVWSVDYSKGDPVLG-ASGSDDGTMQMWDPR 173 (366)
Q Consensus 115 ~~~-----------~~dg~i~iw~~~~~~~~~~----~~-----~~~~~~v~~i~~~~~~~~l~-~~~~~dg~v~~~d~~ 173 (366)
++| +.|+.+++|++........ .. .+.. .+.+++|+|+|++++ ++++.|++|++||++
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADD-YTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTC-CEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCccc-CEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 554 4578899999876532211 11 1122 588999999999873 456679999999999
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe-eEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV-LVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
+++++..+. |...|.+++|+|+| +++++++.+ .+++|+..++.... .....|...|.+++|+ ++.++++++
T Consensus 166 --~~~~~~~~~---~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 166 --DLTEKFEIE---TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp --TTEEEEEEE---CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred --CCcEEEEeC---CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 788877775 45589999999998 788888754 56666666652222 3345688899999999 999999999
Q ss_pred CCC----cEEEEecCCCce----eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccC
Q 017773 252 TDG----CLKLWNVNDSRV----IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAG 323 (366)
Q Consensus 252 ~d~----~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 323 (366)
.|+ .+++|++..... ...+.+|...|.+++|+ |+|++||+|+.|+.|+|||+++++++..+. .
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S--pdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------~ 309 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD--MKGELAVLASNDNSIALVKLKDLSMSKIFK-------Q 309 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC--TTSCEEEEEETTSCEEEEETTTTEEEEEET-------T
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC--CCCCceEEEcCCCEEEEEECCCCcEEEEec-------C
Confidence 887 688899877643 45677888888877777 999999999999999999999999887652 6
Q ss_pred CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 324 SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 324 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+|...|++++|+| ||++||+|+.|++|+||++..
T Consensus 310 gH~~~V~~v~fSp---dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISP---DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECT---TSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEECC---CCCEEEEEeCCCeEEEEEcCC
Confidence 7999999999999 899999999999999999965
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=323.71 Aligned_cols=192 Identities=12% Similarity=0.103 Sum_probs=154.6
Q ss_pred CCcccccccceeeeeecCCCceeeecCCCCc--------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceec
Q 017773 9 QPQAETTNERARCEWDFNLRTTVSSSSSPNA--------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSV 74 (366)
Q Consensus 9 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~ 74 (366)
.....+...+..+.|++++..++.+..++.+ .|..+|++++|+| |++|++++.|++|++||+.++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 3344566777888888888877777766532 3788999999999 889999999999999999876
Q ss_pred ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-----------EeeecCCCC
Q 017773 75 LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-----------FERDEHGGR 143 (366)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~ 143 (366)
+... .+ .|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..+..|..
T Consensus 90 ~~~~---~~-----------~~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~- 152 (902)
T 2oaj_A 90 KVLT---TV-----------FVPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS- 152 (902)
T ss_dssp SEEE---EE-----------ECSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC-
T ss_pred cEEE---EE-----------cCCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC-
Confidence 5432 22 13457999999999 999999999999999999987653 22345666
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC----------------CCCCCeEEEEEcCCCCcEEEE
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS----------------ASRSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~~ 207 (366)
+|.+++|+|++..++++|+.||.| +||++ +++.+..+... .|...|.+++|+|+| .+|++
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~las 228 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLV--ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIIT 228 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETT--TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEE
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECC--CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEE
Confidence 999999999765556999999999 99999 77777776532 234689999999998 89999
Q ss_pred EecCCeEEEEecCCC
Q 017773 208 GCADKKAYAYDVRKM 222 (366)
Q Consensus 208 ~~~d~~i~i~d~~~~ 222 (366)
|+.||.|++||++++
T Consensus 229 gs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 229 IHEDNSLVFWDANSG 243 (902)
T ss_dssp EETTCCEEEEETTTC
T ss_pred EECCCeEEEEECCCC
Confidence 999999999998654
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-41 Score=293.04 Aligned_cols=281 Identities=21% Similarity=0.272 Sum_probs=233.2
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
+.+++|++ ..+++++.||.|++|++.+++... .... .|...|.+++|+|+ +.+|++|+.||.|+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~---------~~~~~v~~v~~s~~--~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAET---------DESTYVASVKWSHD--GSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEEC---------CTTCCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeec---------CCCCCEEEEEECCC--CCEEEEECCCCeEE
Confidence 44567765 457788899999999998765432 1111 24578999999998 99999999999999
Q ss_pred EEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcE
Q 017773 125 EYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSL 204 (366)
Q Consensus 125 iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (366)
+||+.+++.+..+..|.. .|.+++|+ +..+ ++++.||.|++||++. .......+. .|...|.+++|+|++ .+
T Consensus 160 iwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~--~~~~~v~~~~~~~~~-~~ 231 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQA-RVGCLSWN--RHVL-SSGSRSGAIHHHDVRI-ANHQIGTLQ--GHSSEVCGLAWRSDG-LQ 231 (401)
T ss_dssp EEETTTCCEEEEECCCSS-CEEEEEEE--TTEE-EEEETTSEEEEEETTS-SSCEEEEEE--CCSSCEEEEEECTTS-SE
T ss_pred EEECcCCeEEEEecCCCC-ceEEEEEC--CCEE-EEEcCCCCEEEEeccc-CcceeeEEc--CCCCCeeEEEEcCCC-CE
Confidence 999999999999998887 99999995 3444 9999999999999983 234455555 677899999999988 89
Q ss_pred EEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CC-CEEEEEe--CCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 205 VAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV-DTLVTAG--TDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 205 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
+++|+.|+.|++||+++. ++...+..|...|.+++|+ ++ .++++++ .|+.|++||+++++++..+. +...+..+
T Consensus 232 l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp EEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred EEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 999999999999999987 6788888999999999998 44 5666655 79999999999999998887 44566666
Q ss_pred EEEEecCCCeEEE--ecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 281 GLSVWRHGGLLGC--GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 281 ~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
+|+ |+++++++ |+.||.|++||+.+++......+ .+|...|.+++|+| ++.+|++++.||.|++|++
T Consensus 310 ~~s--~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~------~~h~~~v~~~~~s~---dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 310 IWS--PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI------PAHDTRVLYSALSP---DGRILSTAASDENLKFWRV 378 (401)
T ss_dssp EEC--SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE------ECCSSCCCEEEECT---TSSEEEEECTTSEEEEEEC
T ss_pred EEC--CCCCeEEEEeecCCCcEEEEecCCccceeEEEe------cCCCCCEEEEEECC---CCCEEEEEeCCCcEEEEEC
Confidence 666 99999998 66899999999998776655433 45889999999999 8889999999999999999
Q ss_pred cccC
Q 017773 359 KKKP 362 (366)
Q Consensus 359 ~~~~ 362 (366)
.++.
T Consensus 379 ~~~~ 382 (401)
T 4aez_A 379 YDGD 382 (401)
T ss_dssp CC--
T ss_pred CCCc
Confidence 8754
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-42 Score=308.78 Aligned_cols=326 Identities=14% Similarity=0.087 Sum_probs=229.3
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCC------CCEEEEeecCCeEEEEEceecccccceeeeecCc
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPS------DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~------~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
...+..+..|+.+++.+.........+|.+.|.+++|+|+ +.+||+|+.||+|+|||+......... .....
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--~~~~~ 256 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--FKMCE 256 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--EECCC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--ceeec
Confidence 3456778899987765421111112237889999999997 579999999999999999875432100 00111
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeE--EeccCCCceEEEecCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSV--DYSKGDPVLGASGSDD 164 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~~~~d 164 (366)
.+...+.+|...|++++|+|+ + .|++|+.||+|++||++++ .+...+..|.. .|.++ .|+|++..+|++++.|
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~--~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSP--T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSS--S-EEEEEETTSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEecCC--C-eEEEEeCCCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccC
Confidence 122345677889999999985 4 7999999999999999876 44556788887 99999 5777763555999999
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-C
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D 243 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~ 243 (366)
++|++||++ +.++...+........|.+++|+|++ ..+++++.|++|++||+++. .....+.+|...|++++|+ +
T Consensus 333 ~tvklWD~~--~~~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 333 GYFYIFNPK--DIATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp SEEEEECGG--GHHHHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEECCSS
T ss_pred CeEEEEECC--CCCcccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEEeCCC
Confidence 999999998 55655544422111258899999998 78999999999999999987 5667788999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeeccc---ceeeeEEEEEecCCCeEEEecCCCeEEEEEee-cCceEEEEecccc
Q 017773 244 VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV---NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR-WGEPVWVHDFEPV 319 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 319 (366)
+.+|++|+.|++|++||+... .+..++.+. .......++++|++..+.. ..+ ..+|+.. ++..+..+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l----- 479 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKI----- 479 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC----------------
T ss_pred CCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeee-----
Confidence 999999999999999998654 333222111 1112234555599885532 222 3333322 23333332
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
.+|...|.+++|+|+.+.+..||+|+.||.|+||+++..
T Consensus 480 ---~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 480 ---DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ---cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 678999999999995544679999999999999998764
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.5e-42 Score=303.12 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=233.2
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...+++++|+|++++|++|+.||.|++||+.+..... .+..+ ..+....|+|+ +++|++|+.||
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-----------~~~~~~~~~~~--~~~l~~~~~dg 119 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-----------DYTAVDTAKLQ--MRRFILGTTEG 119 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-----------CEEEEEEECSS--SCEEEEEETTS
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-----------CceEEEEEecC--CCEEEEEECCC
Confidence 3445689999999999999999999999998765543 11122 23455578888 99999999999
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|++||+.+++....+..|.. .|.+++|+|+++.+ ++++.|+.|++||+. +++.+..+. +|...|.+++|+|++
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVS-EITKLKFFPSGEAL-ISSSQDMQLKIWSVK--DGSNPRTLI--GHRATVTDIAIIDRG 193 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSS-CEEEEEECTTSSEE-EEEETTSEEEEEETT--TCCCCEEEE--CCSSCEEEEEEETTT
T ss_pred CEEEEeCCCcceeeecccccC-ccEEEEECCCCCEE-EEEeCCCeEEEEeCC--CCcCceEEc--CCCCcEEEEEEcCCC
Confidence 999999999988888788887 99999999998877 999999999999999 777777776 677899999999998
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeec---ccCcEEEEEE---------------------c-CCCEEEEEeCCCcE
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDG---HRKTVTYIRF---------------------L-DVDTLVTAGTDGCL 256 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~---------------------~-~~~~l~~~~~d~~i 256 (366)
.+|++++.|+.|++||++++ +.+..+.. |...+.++++ + ++++|++++.||.|
T Consensus 194 -~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 -RNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI 271 (420)
T ss_dssp -TEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred -CEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence 89999999999999999987 56666654 4445555554 5 67899999999999
Q ss_pred EEEecCCCceeeeee-cccceeeeEEEEEecCCC-eEEEecCCCeEEEEEeecCce-EEEEecccccccCCCCceeeEEE
Q 017773 257 KLWNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWGEP-VWVHDFEPVTAAGSERGFVSSVC 333 (366)
Q Consensus 257 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 333 (366)
++||+++++.+..+. .|...+..++|+ |++. +|++|+.||.|++||+++++. +..+. ..|...|.++.
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~v~~~~ 342 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVD--GNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------INEGTPINNVY 342 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEEC--SSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------ESTTSCEEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEe--CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------ccCCCCceEEE
Confidence 999999998777775 467777777776 9998 999999999999999998754 44443 23677888885
Q ss_pred eeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 334 WRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+ | ++++|++++.||.|++|++..
T Consensus 343 ~-~---~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 343 F-A---AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp E-E---TTEEEEEETTTEEEEEEEECC
T ss_pred e-C---CCCEEEEecCCccEEEEeccC
Confidence 5 5 667999999999999999876
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-40 Score=290.04 Aligned_cols=276 Identities=19% Similarity=0.263 Sum_probs=226.4
Q ss_pred cccccceeeeeecCCCceeeecCCCC--------------c------------------cCCCceEEEEECCCCCEEEEe
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPN--------------A------------------AVSDSIGVIEFDPSDSVFATG 60 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~--------------~------------------~h~~~i~~~~~s~~~~~l~t~ 60 (366)
.|...+..+.|++++..++.+..... . .+...|++++|+|+|++||+|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 46677778888888887776532110 0 012249999999999999999
Q ss_pred ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecC
Q 017773 61 GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEH 140 (366)
Q Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 140 (366)
+.||.|++||+.+.+... .+.+|...|.+++|+|+ +.+|++++.|++|++||+.+++....+..+
T Consensus 142 ~~d~~i~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVM-------------ILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp ETTSCEEEEETTTTEEEE-------------EECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEECCCCcEEE-------------EEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 999999999997654322 24456678999999999 999999999999999999999887777654
Q ss_pred CCCceeeEEecc-CCCceEEEecCCCcEEEeeCCCCCCceeEeecC-----CCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 141 GGRRVWSVDYSK-GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-----SASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 141 ~~~~v~~i~~~~-~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
. .+.+++|+| ++..+ ++|+.|+.|++||++ ++..+..+.. .+|...|.+++|+|++ .+|++|+.|+.|
T Consensus 207 ~--~v~~~~~~~~~~~~l-~~~s~d~~v~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v 280 (393)
T 1erj_A 207 D--GVTTVAVSPGDGKYI-AAGSLDRAVRVWDSE--TGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSV 280 (393)
T ss_dssp S--CEEEEEECSTTCCEE-EEEETTSCEEEEETT--TCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred C--CcEEEEEECCCCCEE-EEEcCCCcEEEEECC--CCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEE
Confidence 3 799999999 55555 999999999999998 6776666532 3678899999999998 899999999999
Q ss_pred EEEecCCCC-----------CCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE
Q 017773 215 YAYDVRKMV-----------DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 215 ~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
++||+++.. .....+.+|...|.+++|+ ++.+|++++.|+.|++||+++++++..+.+|...|..+++
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 999997631 2345677899999999999 8899999999999999999999999999999999988887
Q ss_pred EE----ecCCCeEEEecCCCeEEEEEeecCc
Q 017773 283 SV----WRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 283 ~~----~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
+. +|++.+|++|+.||.|++|++...+
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 62 3578999999999999999987543
No 53
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=298.32 Aligned_cols=307 Identities=16% Similarity=0.229 Sum_probs=231.6
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecC------------CceeEEEEe
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTP------------AKLSSLKWK 106 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~ 106 (366)
+.|.+.|++++|+|+|++||+|+.||.|+||++.+...... ...........+.+|. ..|++++|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEEEc
Confidence 45789999999999999999999999999999987652110 0000111122344555 789999999
Q ss_pred cCCCC--cEEEEEcCCCcEEEEeCCCCcee---------------------------------------Ee-eecCCCCc
Q 017773 107 PGTSG--RVLGSGDYDGVVMEYDLEKKVPI---------------------------------------FE-RDEHGGRR 144 (366)
Q Consensus 107 ~~~~~--~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~~ 144 (366)
|+ + .+|++++.|+.|++||+.++... .. ...|.. .
T Consensus 103 ~~--~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 179 (447)
T 3dw8_B 103 PQ--KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-H 179 (447)
T ss_dssp CC--CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS-C
T ss_pred CC--CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc-c
Confidence 98 6 79999999999999998764331 12 245665 9
Q ss_pred eeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee-----cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEec
Q 017773 145 VWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV-----QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 145 v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~ 219 (366)
|.+++|+|+++.+ ++| .|+.|++||++. ..+....+ ....|...|.+++|+|++..++++|+.||.|++||+
T Consensus 180 v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 180 INSISINSDYETY-LSA-DDLRINLWHLEI-TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCEEEECTTSSEE-EEE-CSSEEEEEETTE-EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred eEEEEEcCCCCEE-EEe-CCCeEEEEECCC-CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9999999998877 788 799999999982 12333322 233677899999999997679999999999999999
Q ss_pred CCCCCC----eeEeecccC------------cEEEEEEc-CCCEEEEEeCCCcEEEEecCC-Cceeeeeecccceee---
Q 017773 220 RKMVDP----VLVFDGHRK------------TVTYIRFL-DVDTLVTAGTDGCLKLWNVND-SRVIRTYKGHVNNRN--- 278 (366)
Q Consensus 220 ~~~~~~----~~~~~~~~~------------~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--- 278 (366)
++. +. ...+..|.. .|.+++|+ ++.+|++++. +.|++||+++ ++++..+.+|...+.
T Consensus 257 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 257 RAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred cCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 987 33 677777776 89999999 8999999998 9999999997 889999998864322
Q ss_pred ----------eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccc------------------------ccccCC
Q 017773 279 ----------FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP------------------------VTAAGS 324 (366)
Q Consensus 279 ----------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~~~ 324 (366)
...++|+|++++|++|+.||.|++||+.+++.+....... ......
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence 1124445999999999999999999999887763221100 000123
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+...|..++|+| ++.+||+++.++ +++|..+
T Consensus 415 ~~~~i~~~~~~p---~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 415 FNKKILHTAWHP---KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp TTSCCCEEEECS---SSSEEEEECSSC-EEEEECC
T ss_pred cCCceeEEEECC---CCCEEEEEecce-eeeeccc
Confidence 456799999999 888999998877 7888754
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-41 Score=285.78 Aligned_cols=281 Identities=16% Similarity=0.219 Sum_probs=207.0
Q ss_pred cccccceeeeeecCCCc--eeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 13 ETTNERARCEWDFNLRT--TVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~--~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
....+..+..|+...+. +..... ..+|.+.|++++|+|++++||+|+.|++|+||++....... ......
T Consensus 29 s~~~D~~i~lw~~~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~ 100 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYDDFTLIDVLD--ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLL 100 (330)
T ss_dssp EEESSSCEEEEECSSSCCEEEEEEC--TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEE
T ss_pred EEcCCCEEEEEEecCCCeEEEEEEe--cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeE
Confidence 33456777788876542 222111 11389999999999999999999999999999986432110 001122
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEecCCCc
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
..+.+|...|.+++|+|+ +++|++|+.|++|++||+... +.+..+..|.. .|.+++|+|++..+ ++++.|+.
T Consensus 101 ~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l-~s~s~D~~ 176 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALL-ASSSYDDT 176 (330)
T ss_dssp EEEC----CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEE-EEEETTSC
T ss_pred EEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEE-EEEcCCCe
Confidence 345677889999999999 999999999999999999432 45667778877 99999999998877 99999999
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC-CcEEEEEecCCeEEEEecCCCC-------CCeeEeec-ccCcEE
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG-SSLVAAGCADKKAYAYDVRKMV-------DPVLVFDG-HRKTVT 237 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~-~~~~v~ 237 (366)
|++||......+++..+. +|...|.+++|+|++ ...+++|+.|++|++||++... .....+.. |...|.
T Consensus 177 i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 254 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254 (330)
T ss_dssp EEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred EEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence 999998722224556655 788899999999983 2689999999999999997641 12233333 889999
Q ss_pred EEEEcCCCEEEEEeCCCcEEEEecCCCc--eeee-eecccc-eeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 238 YIRFLDVDTLVTAGTDGCLKLWNVNDSR--VIRT-YKGHVN-NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 238 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+++|+++.+|++++.||.|++||..+++ .+.. +.+|.. .+..++|++..++++|++|+.||.|++||++.
T Consensus 255 ~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999966689999999999999998773 3333 356776 77777777222789999999999999999864
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.6e-41 Score=280.95 Aligned_cols=251 Identities=18% Similarity=0.291 Sum_probs=207.8
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC--CceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEE
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK--KVPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQ 168 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~ 168 (366)
+.+|...|++++|+|+ +++|++|+.|++|++||+.. .+.+..+.+|.. +|.+++|++. ++.| ++|+.|++|+
T Consensus 5 ~~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l-~s~s~D~~v~ 80 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTIL-ASCSYDGKVM 80 (297)
T ss_dssp CCSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEE-EEEETTTEEE
T ss_pred ccCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEE-EEEcCCCEEE
Confidence 4567889999999999 99999999999999999974 367788889987 9999999864 5555 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCCC-CeeEeecccCcEEEEEEc-C-
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFL-D- 243 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~-~- 243 (366)
+||++......+..+. .|...|.+++|+|+ + .+|++++.|+.|++||+++... ....+.+|...|.+++|+ +
T Consensus 81 iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEcCCCceEEEEEee--cCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 9999822113444444 67779999999997 5 7999999999999999987522 246678899999999998 4
Q ss_pred ------------CCEEEEEeCCCcEEEEecCCCc----eeeeeecccceeeeEEEEEecC---CCeEEEecCCCeEEEEE
Q 017773 244 ------------VDTLVTAGTDGCLKLWNVNDSR----VIRTYKGHVNNRNFVGLSVWRH---GGLLGCGSETNQVFVYD 304 (366)
Q Consensus 244 ------------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd 304 (366)
+++|++++.|+.|++||+++++ ....+.+|...|..++|+ |+ +.+|++++.|+.|++||
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s--p~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC--CCCCCceEEEEEECCCcEEEEE
Confidence 4689999999999999998865 667888999998888887 87 48999999999999999
Q ss_pred eecCceEEE-EecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 305 VRWGEPVWV-HDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 305 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++++..... ..+. ...|...|.+++|+| ++++|++++.||.|+||+..
T Consensus 236 ~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~---~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLK----EEKFPDVLWRASWSL---SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESS----SSCCSSCEEEEEECS---SSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeee----cccCCCcEEEEEECC---CCCEEEEEcCCCcEEEEEEC
Confidence 987532111 1111 145788999999999 88899999999999999976
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=316.60 Aligned_cols=328 Identities=13% Similarity=0.153 Sum_probs=242.8
Q ss_pred cccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
+.....+..+..|+..++..+.... |.+.|++++|+|++++|++|+.||.|++||+.+..... ..........
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~~i~~~~~~~ 144 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS--FKLDNLQKSS 144 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE--EEECCHHHHH
T ss_pred EEEEECcCeEEEEECCCCcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc--ceeccccccc
Confidence 3344456677777777666554442 67899999999999999999999999999998754321 0000000000
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecC-----------------CCCceeeEEeccC
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEH-----------------GGRRVWSVDYSKG 153 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~v~~i~~~~~ 153 (366)
....+|.++|.+++|+|+ ++..|++|+.||.| +||+.+++....+..+ +...|.+++|+|+
T Consensus 145 ~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp TCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred cccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 123567889999999996 25789999999999 9999999888777655 1137999999999
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCceeEe--ec---CC-----------CCC----------------------------
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGKCVST--VQ---PS-----------ASR---------------------------- 189 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~~~~~--~~---~~-----------~~~---------------------------- 189 (366)
+..+ ++++.||.|++||++ +++++.. +. .. .+.
T Consensus 223 g~~l-asgs~Dg~i~lWd~~--~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 223 SLHI-ITIHEDNSLVFWDAN--SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp SSEE-EEEETTCCEEEEETT--TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred CCEE-EEEECCCeEEEEECC--CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 8877 999999999999986 2222110 00 00 000
Q ss_pred --------------------------------------------------------------------------------
Q 017773 190 -------------------------------------------------------------------------------- 189 (366)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (366)
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence
Q ss_pred ----------------------CCeEEE----------------------------------EEcCCCCcEEEEEecCCe
Q 017773 190 ----------------------SAVCCV----------------------------------EFHPFGSSLVAAGCADKK 213 (366)
Q Consensus 190 ----------------------~~i~~~----------------------------------~~~~~~~~~l~~~~~d~~ 213 (366)
..|+++ +|+|++ +++++|+.|++
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~Dgt 458 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGS 458 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCc
Confidence 011111 224555 67888888888
Q ss_pred EEEEecCCCCCCe--eEe---------ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC-----------------
Q 017773 214 AYAYDVRKMVDPV--LVF---------DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS----------------- 264 (366)
Q Consensus 214 i~i~d~~~~~~~~--~~~---------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~----------------- 264 (366)
|++||+.++ ... ..+ .+|...|.+++|+ ++++|++|+.||+|++||+.++
T Consensus 459 VrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~ 537 (902)
T 2oaj_A 459 VRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537 (902)
T ss_dssp EEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred EEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence 888888765 221 111 1688899999999 9999999999999999999765
Q ss_pred ----------------------------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 265 ----------------------------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 265 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
+++..+.+|...|+.++|+ |+| +||+|+.|++|++||++++..+....+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS--pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~ 614 (902)
T 2oaj_A 538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS--NIG-FVGIAYAAGSLMLIDRRGPAIIYMENI 614 (902)
T ss_dssp CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC--BTS-EEEEEETTSEEEEEETTTTEEEEEEEG
T ss_pred eeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec--CCc-EEEEEeCCCcEEEEECCCCeEEEEeeh
Confidence 2467788899999888877 999 999999999999999987766543222
Q ss_pred ccccccC-CCCceeeEEEee-----ccCCCceEEEEeCCCCcEEEEEe
Q 017773 317 EPVTAAG-SERGFVSSVCWR-----RVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 317 ~~~~~~~-~~~~~v~~~~~~-----~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
..+. +|...|++++|+ |+++++++|++|+.|++|++|++
T Consensus 615 ---~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 615 ---REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ---GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ---hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 2333 899999999999 84444699999999999999998
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-39 Score=289.31 Aligned_cols=302 Identities=18% Similarity=0.309 Sum_probs=254.4
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
...+..+..|+..++..+.... +|.+.|.+++|+ +++|++|+.||.|++||+.+++... .+
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-------------~~ 195 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLV----GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-------------TL 195 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECC----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-------------EE
T ss_pred EECCCcEEEEECCCCcEEEEEc----CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-------------EE
Confidence 4456667777777666554432 499999999998 5699999999999999998764332 23
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
.+|...|.++.|+ +..+++|+.||.|++||+.+++.+..+..|.. .|.+++| ++..+ ++++.||.|++||++
T Consensus 196 ~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l-~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 196 YGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRV-VSGAYDFMVKVWDPE 267 (445)
T ss_dssp CCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCE-EEEETTSCEEEEEGG
T ss_pred CCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEE-EEEcCCCEEEEEECC
Confidence 4566789999996 45799999999999999999999999998887 9999999 46666 999999999999998
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCC
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTD 253 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 253 (366)
+++.+..+. +|...|.+++| ++ ..+++|+.|+.|++||++++ +.+..+.+|...+.++.++ ++++++++.|
T Consensus 268 --~~~~~~~~~--~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 338 (445)
T 2ovr_B 268 --TETCLHTLQ--GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK-DNILVSGNAD 338 (445)
T ss_dssp --GTEEEEEEC--CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE-TTEEEEEETT
T ss_pred --CCcEeEEec--CCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe-CCEEEEEeCC
Confidence 778888776 67779999999 45 78999999999999999988 6888899999999988884 6799999999
Q ss_pred CcEEEEecCCCceeeeeec---ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceee
Q 017773 254 GCLKLWNVNDSRVIRTYKG---HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVS 330 (366)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 330 (366)
|.|++||+++++.+..+.. |...+.++++ ++++|++|+.||.|++||+.+++.+..+... ...+|.+.|+
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~ 411 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTL---ESGGSGGVVW 411 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEE----CSSEEEEEETTSEEEEEETTTCCEEEEEEEC---TTGGGTCEEE
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEE----CCCEEEEEeCCCeEEEEECCCCceeeeeecc---ccCCCCceEE
Confidence 9999999999999999986 6666666655 4789999999999999999999988776321 1145788999
Q ss_pred EEEeeccCCCceEEEEeCCCCc----EEEEEeccc
Q 017773 331 SVCWRRVGEDECTLVAGGSDGL----LHVFVGKKK 361 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~----i~iw~~~~~ 361 (366)
+++|+| ++.+|++|+.||. |.+||.+..
T Consensus 412 ~~~~s~---~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 412 RIRASN---TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECS---SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEecC---CEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999 9999999999998 999998764
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.8e-40 Score=288.76 Aligned_cols=280 Identities=19% Similarity=0.278 Sum_probs=232.3
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
.++.|+||++ ++||+|. |++|+|||..+++... .+. +.+|...|++++|+|+ |++|++|+.||.|
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~---~~~--------~~~~~~~V~sv~fspd--g~~lasgs~Dg~v 171 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ---LLQ--------MEQPGEYISSVAWIKE--GNYLAVGTSSAEV 171 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE---EEE--------CCSTTCCEEEEEECTT--SSEEEEEETTSCE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE---EEE--------ecCCCCcEEEEEECCC--CCEEEEEECCCeE
Confidence 3567999976 4788775 9999999998876543 222 1234567999999999 9999999999999
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
++||+++++.+..+.+|.. .+.+++++ +.. +++|+.|+.+++||... ....+..+. +|...+..+.++|++ .
T Consensus 172 ~iWd~~~~~~~~~~~~h~~-~v~~~s~~--~~~-l~sgs~d~~i~~~d~~~-~~~~~~~~~--~h~~~~~~~~~~~~g-~ 243 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSA-RVGSLSWN--SYI-LSSGSRSGHIHHHDVRV-AEHHVATLS--GHSQEVCGLRWAPDG-R 243 (420)
T ss_dssp EEEETTTTEEEEEECCCSS-CEEEEEEE--TTE-EEEEETTSEEEEEETTS-SSCEEEEEE--CCSSCEEEEEECTTS-S
T ss_pred EEEEcCCCcEEEEEeCCCC-ceEEEeeC--CCE-EEEEeCCCceeEeeecc-cceeeEEec--ccccceeeeeecCCC-C
Confidence 9999999999999999987 89888886 344 49999999999999883 234445555 677899999999998 8
Q ss_pred EEEEEecCCeEEEEecCCCC---CCeeEeecccCcEEEEEEc--CCCEEEE--EeCCCcEEEEecCCCceeeeeecccce
Q 017773 204 LVAAGCADKKAYAYDVRKMV---DPVLVFDGHRKTVTYIRFL--DVDTLVT--AGTDGCLKLWNVNDSRVIRTYKGHVNN 276 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~--~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (366)
++++++.|+.+++||..... ..+.....|...|.+++|+ +...+++ |+.|++|++||+.+++++..+..+. .
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~ 322 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-Q 322 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-C
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-c
Confidence 99999999999999998753 2456677899999999998 5556665 4579999999999999999888765 4
Q ss_pred eeeEEEEEecCCCeEEEec--CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 277 RNFVGLSVWRHGGLLGCGS--ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
+..+.++ |+++.+++++ .|+.|++||+.+++++..+ .+|.+.|++++|+| ||++|+||+.||+|+
T Consensus 323 v~~~~~~--~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--------~gH~~~V~~l~~sp---dg~~l~S~s~D~tvr 389 (420)
T 4gga_A 323 VCSILWS--PHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSP---DGATVASAAADETLR 389 (420)
T ss_dssp EEEEEEE--TTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECT---TSSCEEEEETTTEEE
T ss_pred eeeeeec--CCCCeEEEEEecCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcC---CCCEEEEEecCCeEE
Confidence 4455555 9998887654 7999999999999988776 67999999999999 888999999999999
Q ss_pred EEEecc
Q 017773 355 VFVGKK 360 (366)
Q Consensus 355 iw~~~~ 360 (366)
|||+..
T Consensus 390 iWdv~~ 395 (420)
T 4gga_A 390 LWRCFE 395 (420)
T ss_dssp EECCSC
T ss_pred EEECCC
Confidence 999864
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-41 Score=288.45 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=234.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+.++|.+++|+|||++++++..++.+.+|....... .....+|..+|++++|+|+ +++|++++ |
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~h~~~v~~~~~~~~--~~~l~~~~-d 71 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-------------QINTLNHGEVVCAVTISNP--TRHVYTGG-K 71 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-------------EEEEECCSSCCCEEEECSS--SSEEEEEC-B
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccc-------------cceeccCCCceEEEEEecC--CcEEEEcC-C
Confidence 567899999999999999988777665554332111 1112356788999999999 99999999 9
Q ss_pred CcEEEEeCCCCcee---Eeee--cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc--eeEeecCCCCCCCeE
Q 017773 121 GVVMEYDLEKKVPI---FERD--EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK--CVSTVQPSASRSAVC 193 (366)
Q Consensus 121 g~i~iw~~~~~~~~---~~~~--~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~~~~~i~ 193 (366)
|.|++||+.++... ..+. .|.. .|.+++|+|+++.+ ++++.|+.|++||+. ..+ ....+. .|...+.
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~--~~~~~~~~~~~--~~~~~i~ 145 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDN-YIRSCKLLPDGCTL-IVGGEASTLSIWDLA--APTPRIKAELT--SSAPACY 145 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTS-BEEEEEECTTSSEE-EEEESSSEEEEEECC--CC--EEEEEEE--CSSSCEE
T ss_pred CeEEEEECCCCCceeeeecccccCCCC-cEEEEEEcCCCCEE-EEEcCCCcEEEEECC--CCCcceeeecc--cCCCceE
Confidence 99999999876533 2332 4555 99999999998877 899999999999998 444 344444 6777999
Q ss_pred EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 017773 194 CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 272 (366)
+++|+|++ .++++++.|+.|++||+++. +....+..|...+.+++|+ ++++|++++.|+.|++||+++++.+..+.
T Consensus 146 ~~~~~~~~-~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 222 (337)
T 1gxr_A 146 ALAISPDS-KVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD- 222 (337)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEEECCCC-CEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-
Confidence 99999998 89999999999999999987 6788888899999999999 88999999999999999999998887775
Q ss_pred ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
+...+..++++ |++++|++++.|+.|++||+++++... + ..|...|.+++|+| ++++|++++.||.
T Consensus 223 ~~~~v~~~~~s--~~~~~l~~~~~~~~i~~~~~~~~~~~~-~--------~~~~~~v~~~~~~~---~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 223 FTSQIFSLGYC--PTGEWLAVGMESSNVEVLHVNKPDKYQ-L--------HLHESCVLSLKFAY---CGKWFVSTGKDNL 288 (337)
T ss_dssp CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSSCEEE-E--------CCCSSCEEEEEECT---TSSEEEEEETTSE
T ss_pred CCCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCCeEE-E--------cCCccceeEEEECC---CCCEEEEecCCCc
Confidence 55566666666 999999999999999999999876542 2 45889999999999 8889999999999
Q ss_pred EEEEEecccC
Q 017773 353 LHVFVGKKKP 362 (366)
Q Consensus 353 i~iw~~~~~~ 362 (366)
|++|+++++.
T Consensus 289 i~~~~~~~~~ 298 (337)
T 1gxr_A 289 LNAWRTPYGA 298 (337)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCe
Confidence 9999987653
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-40 Score=280.57 Aligned_cols=272 Identities=17% Similarity=0.300 Sum_probs=229.8
Q ss_pred cccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecc
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
+..|...+..+.|++++..++.+..++.+ +|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 34566777778888887777777666533 389999999999999999999999999999998754
Q ss_pred cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC
Q 017773 76 VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP 155 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 155 (366)
... . +.+|...|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+..|.. +|.+++|+|+++
T Consensus 99 ~~~---~----------~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 162 (312)
T 4ery_A 99 CLK---T----------LKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGS 162 (312)
T ss_dssp EEE---E----------EECCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSS
T ss_pred EEE---E----------EcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCC
Confidence 332 2 3445678999999999 99999999999999999999999999988887 999999999988
Q ss_pred ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc
Q 017773 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
.+ ++++.||.|++||++ +++.+..+.. .+...+..++|+|++ .++++++.|+.|++||++++ +.+..+.+|...
T Consensus 163 ~l-~~~~~d~~i~~wd~~--~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~ 236 (312)
T 4ery_A 163 LI-VSSSYDGLCRIWDTA--SGQCLKTLID-DDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKG-KCLKTYTGHKNE 236 (312)
T ss_dssp EE-EEEETTSCEEEEETT--TCCEEEEECC-SSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTT-EEEEEECSSCCS
T ss_pred EE-EEEeCCCcEEEEECC--CCceeeEEec-cCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCC-cEEEEEEecCCc
Confidence 77 999999999999999 6777666543 355689999999998 89999999999999999987 677778777654
Q ss_pred EEE--EEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec--CCCeEEEEEee
Q 017773 236 VTY--IRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS--ETNQVFVYDVR 306 (366)
Q Consensus 236 v~~--~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 306 (366)
... ..++ ++.+|++++.||.|++||+++++.+..+.+|...+..++++ |++.++++++ .|+.|++|+.+
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH--PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--SSSSEEEEEECTTTCCEEEEECC
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec--CcCCceEEEEccCCccEEEecCC
Confidence 332 2333 78899999999999999999999999999999888777766 9999999886 69999999864
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-40 Score=277.81 Aligned_cols=242 Identities=12% Similarity=0.164 Sum_probs=202.1
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|...|++++|+|++++|++|+.|++|++||+.+++... .+.+|...|.+++|+|+ +.+|++|+.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-------------~~~~h~~~v~~~~~~~~--~~~l~s~s~ 127 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-------------RFVGHKSDVMSVDIDKK--ASMIISGSR 127 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------EEECCSSCEEEEEECTT--SCEEEEEET
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE-------------EEccCCCcEEEEEEcCC--CCEEEEEeC
Confidence 499999999999999999999999999999998765432 24456678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCC-----ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDP-----VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
|++|++||+. ++.+..+.+|.. .|.++.|.|... .++++++.|+.|++||++ ..+....+. +|...|.+
T Consensus 128 D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~--~h~~~v~~ 201 (319)
T 3frx_A 128 DKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFI--GHNSNINT 201 (319)
T ss_dssp TSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETT--TTEEEEEEC--CCCSCEEE
T ss_pred CCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC--cchhheeec--CCCCcEEE
Confidence 9999999996 556777888877 899999998643 245999999999999998 677766665 68889999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec-
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG- 272 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~- 272 (366)
++|+|++ .+|++|+.||.|++||+++. +.+..+.. ...|.+++|+ ++.++++++. +.+++|++.....+..+..
T Consensus 202 ~~~sp~g-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 202 LTASPDG-TLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EEECTTS-SEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCC
T ss_pred EEEcCCC-CEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcc
Confidence 9999998 89999999999999999987 56666664 5689999999 7777777764 5599999998877666543
Q ss_pred -------ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 273 -------HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 273 -------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
|...+..++| +|+|++|++|+.||.|++||+.++
T Consensus 278 ~~~~~~~~~~~v~~~~~--spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 278 FAGYSKAAEPHAVSLAW--SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTCCGGGCCCEEEEEE--CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcCcceeEEEE--CCCCCEEEEeecCceEEEEEEeec
Confidence 2334444554 599999999999999999999875
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-40 Score=279.25 Aligned_cols=250 Identities=19% Similarity=0.244 Sum_probs=200.8
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|+|++||+|+.|++|+||++..... .....+.+|.++|.+++|+|+..+++|++|+.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----------EEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 4999999999999999999999999999999875321 11123456778999999986323789999999
Q ss_pred CCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 120 DGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 120 dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
|++|++||+++++ .+..+..|.. .|.+++|+|+ +..+ ++++.|+.|++||++.........+. +|...|.++
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~g~~l-~s~s~d~~v~~wd~~~~~~~~~~~~~--~h~~~v~~~ 151 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPML-LVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSA 151 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEECCGGGCSEE-EEEETTSEEEEEEBCSSSCBCCEEEE--CCSSCEEEE
T ss_pred CCEEEEEEcCCCceEEEEEeecCCC-ceeEEEeCcCCCCcEE-EEEECCCcEEEEEecCCCceeeeeee--cccCccceE
Confidence 9999999998774 4566677776 8999999997 5555 99999999999999832111223333 677899999
Q ss_pred EEcCCC------------CcEEEEEecCCeEEEEecCCCCC---CeeEeecccCcEEEEEEc-C---CCEEEEEeCCCcE
Q 017773 196 EFHPFG------------SSLVAAGCADKKAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL-D---VDTLVTAGTDGCL 256 (366)
Q Consensus 196 ~~~~~~------------~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~i 256 (366)
+|+|++ ..+|++|+.|+.|++||+++... ....+.+|...|.+++|+ + +.+|++++.|++|
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 999973 26899999999999999987632 456788999999999999 5 4789999999999
Q ss_pred EEEecCCCc---eeeee--ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 257 KLWNVNDSR---VIRTY--KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 257 ~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
++||+++.. ....+ ..|...+..++|+ |++++|++++.|+.|++|+..
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEEC--SSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEEC--CCCCEEEEEcCCCcEEEEEEC
Confidence 999998753 11223 4566667666666 999999999999999999986
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.2e-40 Score=291.82 Aligned_cols=276 Identities=16% Similarity=0.299 Sum_probs=231.6
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|...|+++++ ++++|++|+.||.|++||+.+++... .+.+|...|.+++| + +++|++|+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-------------~~~~h~~~v~~l~~--~--~~~l~sg~~ 191 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-------------ILTGHTGSVLCLQY--D--ERVIITGSS 191 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-------------EECCCSSCEEEEEC--C--SSEEEEEET
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE-------------EEcCCCCcEEEEEE--C--CCEEEEEcC
Confidence 47788999887 78899999999999999988755432 23456678999999 5 789999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeE-eecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVS-TVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 198 (366)
||.|++||+.+++.+..+..|.. .|.+++|++ .. +++|+.||.|++||+. +..... .....+|...|.+++|
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~--~~-l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCE-AVLHLRFNN--GM-MVTCSKDRSIAVWDMA--SPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCS-CEEEEECCT--TE-EEEEETTSCEEEEECS--SSSCCEEEEEECCCSSCEEEEEE-
T ss_pred CCeEEEEECCCCcEEEEEcCCCC-cEEEEEEcC--CE-EEEeeCCCcEEEEeCC--CCCCceeeeEecCCCCcEEEEEe-
Confidence 99999999999999999998887 999999974 34 4999999999999998 444331 1122367789999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
++ .++++|+.||.|++||++++ +.+..+.+|...|.++.+ ++.++++++.||.|++||+++++++..+.+|...+.
T Consensus 265 -~~-~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 340 (435)
T 1p22_A 265 -DD-KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340 (435)
T ss_dssp -ET-TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred -CC-CEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEE
Confidence 44 79999999999999999988 788889999999999998 568999999999999999999999999999998877
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCc---------eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGE---------PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
++++ ++.+|++|+.||.|++||+.+++ .+..+ .+|.+.|.+++| ++.+|++++.
T Consensus 341 ~~~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~-----~~~~l~s~s~ 403 (435)
T 1p22_A 341 CIRF----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--------VEHSGRVFRLQF-----DEFQIVSSSH 403 (435)
T ss_dssp EEEC----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--------CCCSSCCCCEEE-----CSSCEEECCS
T ss_pred EEEe----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--------cCCCCCeEEEEe-----CCCEEEEEeC
Confidence 7665 68999999999999999998765 44443 578999999999 4458999999
Q ss_pred CCcEEEEEecccC
Q 017773 350 DGLLHVFVGKKKP 362 (366)
Q Consensus 350 dg~i~iw~~~~~~ 362 (366)
||.|++||+.+.+
T Consensus 404 Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 404 DDTILIWDFLNDP 416 (435)
T ss_dssp SSEEEEEC-----
T ss_pred CCEEEEEECCCCC
Confidence 9999999997643
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-40 Score=329.04 Aligned_cols=317 Identities=18% Similarity=0.241 Sum_probs=261.5
Q ss_pred cccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccc
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVD 77 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~ 77 (366)
.|.+.+..+.|++++..++++..++.+ +|.+.|++++|+|++++||+|+.||.|++||+.+++..
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 456677777788877777777665533 39999999999999999999999999999999876543
Q ss_pred cceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCce
Q 017773 78 HPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVL 157 (366)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 157 (366)
. . +.+|...|.+++|+|+.++.++++|+.|+.|++||+.+++....+.+|.. .|.+++|+|+++.+
T Consensus 693 ~---~----------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 693 H---T----------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELL 758 (1249)
T ss_dssp E---E----------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEE
T ss_pred E---E----------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEE
Confidence 3 2 33556789999999964477999999999999999999999999999888 99999999999877
Q ss_pred EEEecCCCcEEEeeCCCCCCceeEeec-----------------------------------------------------
Q 017773 158 GASGSDDGTMQMWDPRCDGGKCVSTVQ----------------------------------------------------- 184 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~~~~~~~~----------------------------------------------------- 184 (366)
++++.||.|++||+. +++....+.
T Consensus 759 -~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 759 -ASCSADGTLRLWDVR--SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp -EEEESSSEEEEEEGG--GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred -EEEECCCeEEEEeCC--CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 999999999999987 443332221
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
..+|...+.+++|+|++ .++++++.|+.|++||+.+. .....+.+|...|.+++|+ ++.+|++++.|+.|++||+.+
T Consensus 836 ~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp ECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred cCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 01456789999999998 89999999999999999987 6788889999999999999 899999999999999999764
Q ss_pred Ccee-----------------------------eeee--------cccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 264 SRVI-----------------------------RTYK--------GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 264 ~~~~-----------------------------~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.... .... .+...+.+++++ |+++++++|+.+|.|++||+.
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--p~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS--PHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC--TTSSEEEEEETTSCCEEEETT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc--CCCCEEEEEcCCCCEEEEEcC
Confidence 2110 0000 112344555555 999999999999999999999
Q ss_pred cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 307 WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+++....+ .+|...|++++|+| ++++|++++.||.|++|++.++
T Consensus 992 ~~~~~~~~--------~~h~~~v~~l~~s~---dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 992 NNRVFSSG--------VGHKKAVRHIQFTA---DGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp TTSCEEEC--------CCCSSCCCCEEECS---SSSCEEEECSSSBEEEEETTTT
T ss_pred CCceeeec--------ccCCCceEEEEECC---CCCEEEEEcCCCEEEEEECCCC
Confidence 98876654 57899999999999 8889999999999999998764
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-40 Score=294.02 Aligned_cols=280 Identities=19% Similarity=0.309 Sum_probs=234.3
Q ss_pred cCCCc-eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDS-IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~-i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|.+. +.++.+ ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++|+|+ + +|++|+
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~-------------~~~~h~~~V~~l~~~~~--~-~l~s~s 180 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-------------QLSGHDGGVWALKYAHG--G-ILVSGS 180 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE-------------EECCCSSCEEEEEECST--T-EEEEEE
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE-------------EEeCCCcCEEEEEEcCC--C-EEEEEe
Confidence 37776 466666 56799999999999999988765332 23456789999999997 6 999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEecc--CCCceEEEecCCCcEEEeeCCCCCCceeE---------------
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK--GDPVLGASGSDDGTMQMWDPRCDGGKCVS--------------- 181 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~dg~v~~~d~~~~~~~~~~--------------- 181 (366)
.||+|++||+.+++.+..+..|.. .|.+++|++ ++..+ ++++.||.|++||++ ......
T Consensus 181 ~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l-~s~s~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 181 TDRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYI-VTGSRDNTLHVWKLP--KESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEE-EEEETTSCEEEEECC--CCCCC------CCSSEEESCG
T ss_pred CCCCEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEE-EEEcCCCcEEEeeCC--CCcccccccccCCcceEeecc
Confidence 999999999999999999998887 999999995 44555 999999999999998 333211
Q ss_pred ------eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC
Q 017773 182 ------TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG 254 (366)
Q Consensus 182 ------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 254 (366)
.....+|...+.++ ++++ .++++|+.|+.|++||+++. +.+..+.+|...|.+++|+ +++++++++.||
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 11123566677777 4555 79999999999999999987 6888899999999999999 899999999999
Q ss_pred cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEe
Q 017773 255 CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCW 334 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 334 (366)
.|++||+++++++.++.+|...+..++++ +.+|++++.||.|++||+.+++...... |...+..++|
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------~~~~~~~~~~ 399 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFSYH---------HTNLSAITTF 399 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEEEEE---------CTTCCCEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCceeeeec---------CCCCccEEEE
Confidence 99999999999999999999988777664 6899999999999999999887665542 4567888999
Q ss_pred eccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 335 RRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+| ++++|++++ ||.|++||++++.
T Consensus 400 ~~---~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 400 YV---SDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EE---CSSEEEEEE-TTEEEEEETTTCC
T ss_pred Ee---CCCEEEEec-CCeEEEEECCCCc
Confidence 99 888999998 9999999998754
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-39 Score=288.97 Aligned_cols=302 Identities=19% Similarity=0.278 Sum_probs=246.4
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceecee
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
....+..+..|+..++..+.... +|.+.|++++|+|++ +|++|+.||+|++||+.+++... .
T Consensus 137 sgs~dg~i~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-------------~ 198 (464)
T 3v7d_B 137 TGADDKMIRVYDSINKKFLLQLS----GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH-------------V 198 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC----CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE-------------E
T ss_pred EEcCCCcEEEEECCCCcEEEEEe----CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE-------------E
Confidence 34556777888877777665543 499999999999988 99999999999999998764332 2
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce-----------------------eEeeecCCCCceeeEE
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP-----------------------IFERDEHGGRRVWSVD 149 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~v~~i~ 149 (366)
+.+|...|.+++|++.+++.++++|+.|+.|++||+.++.. ...+.+|.. .|.++
T Consensus 199 ~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~- 276 (464)
T 3v7d_B 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV- 276 (464)
T ss_dssp ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEE-
T ss_pred ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEE-
Confidence 34566789999999643489999999999999999987653 334555655 77776
Q ss_pred eccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe
Q 017773 150 YSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF 229 (366)
Q Consensus 150 ~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 229 (366)
+++++.+ ++++.||.|++||++ +++.+..+. +|...|.+++|+|++ ..+++|+.||.|++||++++ +++..+
T Consensus 277 -~~~~~~l-~~~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~-~~~~~~ 348 (464)
T 3v7d_B 277 -SGHGNIV-VSGSYDNTLIVWDVA--QMKCLYILS--GHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENG-ELMYTL 348 (464)
T ss_dssp -EEETTEE-EEEETTSCEEEEETT--TTEEEEEEC--CCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred -cCCCCEE-EEEeCCCeEEEEECC--CCcEEEEec--CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-cEEEEE
Confidence 4556766 999999999999999 788888776 677899999999998 79999999999999999987 788899
Q ss_pred ecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 230 DGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 230 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
.+|...|.+++|+ +.+|++++.||.|++||+++++....+. +...+..++++ |+++++++|+ ||.|++||+++++
T Consensus 349 ~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY--VSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE--ECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE--eCCCEEEEec-CCeEEEEECCCCc
Confidence 9999999999996 6899999999999999999987666654 44556666766 9999999998 8999999999998
Q ss_pred eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
.+.... ..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 424 ~~~~~~-------~~~~~~v~~v~~~----~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 424 LVHANI-------LKDADQIWSVNFK----GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEESCT-------TTTCSEEEEEEEE----TTEEEEEEEETTEEEEEEE
T ss_pred EEehhh-------ccCCCcEEEEEec----CCEEEEEEEeCCeEEEEEe
Confidence 876432 4578999999997 3456777777887766654
No 67
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.9e-40 Score=280.15 Aligned_cols=274 Identities=13% Similarity=0.132 Sum_probs=230.6
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc-EEEEEc
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR-VLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~ 118 (366)
+|.+.|++++|+|++++|++++.||.|++|++.+....... .....|...|.+++|+|+ +. +|++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~--~~~~l~~~~ 76 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----------LQSLRYKHPLLCCNFIDN--TDLQIYVGT 76 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------EEEEECSSCEEEEEEEES--SSEEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc----------eeeeecCCceEEEEECCC--CCcEEEEEc
Confidence 49999999999999999999999999999999876422111 123356778999999999 99 999999
Q ss_pred CCCcEEEEeC-CCCceeEeeec--CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC---------CceeEeecCC
Q 017773 119 YDGVVMEYDL-EKKVPIFERDE--HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG---------GKCVSTVQPS 186 (366)
Q Consensus 119 ~dg~i~iw~~-~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~---------~~~~~~~~~~ 186 (366)
.||.|++||+ .+++. ..+.. |.. .|.+++|+| +..+ ++++.|+.|++||++ . .+++..+.
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~-~v~~l~~~~-~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-- 148 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QALTNNEANL-GICRICKYG-DDKL-IAASWDGLIEVIDPR--NYGDGVIAVKNLNSNNTK-- 148 (342)
T ss_dssp TTSCEEEECSSSSSSE-EECBSCCCCS-CEEEEEEET-TTEE-EEEETTSEEEEECHH--HHTTBCEEEEESCSSSSS--
T ss_pred CCCeEEEEEeccCCce-EeccccCCCC-ceEEEEeCC-CCEE-EEEcCCCeEEEEccc--ccccccccccCCeeeEEe--
Confidence 9999999999 77754 56666 766 999999999 7666 999999999999998 4 44444443
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC-CCC-CeeEeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecC
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK-MVD-PVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~ 262 (366)
+...+.+++|+|++ +++++.++.|++||+++ ... .......|...+.+++|+ +++++++++.||.|++|+++
T Consensus 149 -~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred -eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 66799999999864 88999999999999998 533 334455688899999998 58899999999999999998
Q ss_pred CC------ceeeeeecccc---------eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCC-C
Q 017773 263 DS------RVIRTYKGHVN---------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE-R 326 (366)
Q Consensus 263 ~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~ 326 (366)
.. +....+..|.. .+..++++ |++++|++++.||.|++||+.+++.+..+ .+| .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~~h~ 294 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS--PRHKFLYTAGSDGIISCWNLQTRKKIKNF--------AKFNE 294 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC--TTTCCEEEEETTSCEEEEETTTTEEEEEC--------CCCSS
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEc--CCCCEEEEecCCceEEEEcCccHhHhhhh--------hcccC
Confidence 87 78888888865 67766666 99999999999999999999999887665 456 8
Q ss_pred ceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 327 GFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 327 ~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
..|.+++ | ++++|++++.||.
T Consensus 295 ~~v~~~~--~---~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 295 DSVVKIA--C---SDNILCLATSDDT 315 (342)
T ss_dssp SEEEEEE--E---CSSEEEEEEECTH
T ss_pred CCceEec--C---CCCeEEEEecCCc
Confidence 9999999 7 8889999999998
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-39 Score=300.54 Aligned_cols=310 Identities=15% Similarity=0.207 Sum_probs=235.6
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCC---ceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSD---SIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
..+..+..|+......+.... .|.. .|++++|+|+ +++|++++.||.|++||+.+++... .+...
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~---- 248 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDR----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDD---- 248 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEEC----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBT----
T ss_pred eCCCcEEEEeCCCcceeeeec----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE---Eeccc----
Confidence 344555566655555443332 3788 9999999999 9999999999999999998765432 21000
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC---CCceeeEEeccCCCceEEEecCCCcE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG---GRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
...|..+|.+++|+ + +.+|++++.|+.|++||+.+++.+..+..+. ...+.++.|. ++..+ ++++.||.|
T Consensus 249 --~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~~~~~~g~i 321 (615)
T 1pgu_A 249 --QEPVQGGIFALSWL-D--SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRI-ISLSLDGTL 321 (615)
T ss_dssp --TBCCCSCEEEEEES-S--SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEE-EEEETTSCE
T ss_pred --ccccCCceEEEEEc-C--CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeE-EEEECCCCE
Confidence 01456789999999 8 9999999999999999999999888887762 1267888885 66666 899999999
Q ss_pred EEeeCCCCCCceeEeecC-------------------------------CCCCCCeEEEEEcCCC---------------
Q 017773 168 QMWDPRCDGGKCVSTVQP-------------------------------SASRSAVCCVEFHPFG--------------- 201 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~-------------------------------~~~~~~i~~~~~~~~~--------------- 201 (366)
++||+. .++.+..+.. ..|...|.+++| +++
T Consensus 322 ~~~d~~--~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 322 NFYELG--HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp EEEETT--EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEET
T ss_pred EEEECC--CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEE
Confidence 999988 4555444431 123334444444 212
Q ss_pred ---------------------------------------------------------CcEEEEEec-CCeEEEEecCCCC
Q 017773 202 ---------------------------------------------------------SSLVAAGCA-DKKAYAYDVRKMV 223 (366)
Q Consensus 202 ---------------------------------------------------------~~~l~~~~~-d~~i~i~d~~~~~ 223 (366)
..++++++. |+.|++||+.+.
T Consensus 399 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~- 477 (615)
T 1pgu_A 399 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL- 477 (615)
T ss_dssp TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-
T ss_pred EcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-
Confidence 123444444 555555555443
Q ss_pred CCe-eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEec----------CCCe
Q 017773 224 DPV-LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWR----------HGGL 290 (366)
Q Consensus 224 ~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~ 290 (366)
+.. ..+..|...|++++|+ ++++|++++.||.|++||+.+++++..+.+ |...+..++|+ | ++++
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK--PAEKGANEEEIEEDL 555 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC--CCC------CCSCCE
T ss_pred cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc--CccccccccccCCCE
Confidence 111 4556788999999999 999999999999999999999999999988 99988888877 8 9999
Q ss_pred EEEecCCCeEEEEEeecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 291 LGCGSETNQVFVYDVRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 291 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
|++++.||.|++||+.++ +++..+ .+|...|++++|+| +++ |++++.||.|++|+++.
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~---~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWET---PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEE---TTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEcCCCcEEEEECCCCceechhh--------hcCccceEEEEEcC---CCC-eEEecCCceEEEEeeec
Confidence 999999999999999987 455443 67899999999999 999 99999999999999875
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-40 Score=312.27 Aligned_cols=284 Identities=19% Similarity=0.284 Sum_probs=245.0
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++||+|+.||.|+|||+.++.... .+.+|..+|.+++|+|+ +++|++++.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-------------~~~~~~~~v~~~~~s~~--~~~l~~~~~ 75 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-------------SIQVTETPVRAGKFIAR--KNWIIVGSD 75 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-------------EEECCSSCEEEEEEEGG--GTEEEEEET
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-------------EEecCCCcEEEEEEeCC--CCEEEEEeC
Confidence 489999999999999999999999999999987754332 23345678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC-ceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG-KCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 198 (366)
||.|++||+.+++.+..+..|.. .|.+++|+|+++.+ ++++.||.|++||+. .+ .....+. +|...|.+++|+
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~--~~~~~v~~~~~~ 149 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYV-LSGSDDLTVKLWNWE--NNWALEQTFE--GHEHFVMCVAFN 149 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEE-EEEETTSEEEEEEGG--GTSEEEEEEE--CCSSCEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCC-CEEEEEEeCCCCEE-EEEcCCCEEEEEECC--CCceEEEEEc--CCCCcEEEEEEE
Confidence 99999999999999999998887 99999999999987 899999999999998 44 4555555 567799999999
Q ss_pred C-CCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc---CCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 199 P-FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL---DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 199 ~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
| ++ ..+++++.||.|++||+++. .....+.. +...+..++|+ ++.++++++.||.|++||+++++.+..+.+|
T Consensus 150 p~~~-~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 150 PKDP-STFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp TTEE-EEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred cCCC-CEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 9 65 89999999999999999887 44444544 44889999997 6789999999999999999999999999999
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce--EEEEeCCCC
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC--TLVAGGSDG 351 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~l~s~~~dg 351 (366)
...+..++++ |++.+|++++.||.|++||+.+++....+ ..|...+.+++|+| ++. +++++ .|+
T Consensus 228 ~~~v~~~~~~--~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~---~~~~~~~~~~-~~~ 293 (814)
T 3mkq_A 228 MSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTL--------NVGLERSWCIATHP---TGRKNYIASG-FDN 293 (814)
T ss_dssp SSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCSEEEEE--------CCSSSSEEEEEECT---TCGGGEEEEE-ETT
T ss_pred CCCEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe--------ecCCCcEEEEEEcc---CCCceEEEEE-eCC
Confidence 9888888877 99999999999999999999999888776 44678999999999 665 45555 566
Q ss_pred cEEEEEecc
Q 017773 352 LLHVFVGKK 360 (366)
Q Consensus 352 ~i~iw~~~~ 360 (366)
.+.+|++..
T Consensus 294 ~~~~~~~~~ 302 (814)
T 3mkq_A 294 GFTVLSLGN 302 (814)
T ss_dssp EEEEEECSC
T ss_pred CEEEEEcCC
Confidence 688998764
No 70
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-39 Score=277.26 Aligned_cols=272 Identities=17% Similarity=0.246 Sum_probs=208.2
Q ss_pred cccccccceeeeeecCCCcee---eecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCc
Q 017773 11 QAETTNERARCEWDFNLRTTV---SSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
+.....+..+..|+....... ........+|...|++++|+|++.+|++|+.|++|++||+.+++...
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~--------- 112 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK--------- 112 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---------
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---------
Confidence 344455677778877543210 00001123599999999999999999999999999999998764432
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee---cCCCCceeeEEeccCCC---------
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD---EHGGRRVWSVDYSKGDP--------- 155 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~--------- 155 (366)
.+.+|...|.+++|+|+ +++|++++.|++|++||+.... ..... .|.. .|.+++|+|++.
T Consensus 113 ----~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ 184 (343)
T 2xzm_R 113 ----RFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWNILGEC-KFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFA 184 (343)
T ss_dssp ----EEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSC
T ss_pred ----EEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCc-eeeeeeeccccccccccCCCC
Confidence 23456678999999999 9999999999999999997433 33322 4555 899999999872
Q ss_pred ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCc
Q 017773 156 VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
.++++++.|+.|++||.. .+....+. .|...|.+++|+|+| .+|++|+.|+.|++||++....+...+. +...
T Consensus 185 ~~l~s~~~d~~i~iwd~~---~~~~~~~~--~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~ 257 (343)
T 2xzm_R 185 PYFASVGWDGRLKVWNTN---FQIRYTFK--AHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFD-AGST 257 (343)
T ss_dssp CEEEEEETTSEEEEEETT---TEEEEEEE--CCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSC
T ss_pred CEEEEEcCCCEEEEEcCC---CceeEEEc--CccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeec-CCCc
Confidence 344999999999999954 55555665 677899999999998 8999999999999999965534444443 5567
Q ss_pred EEEEEEc-CCCEEEEEeCCCcEEEEecCCCceee--eee-----------cccceeeeEEEEEecCCCeEEEecCCCeEE
Q 017773 236 VTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIR--TYK-----------GHVNNRNFVGLSVWRHGGLLGCGSETNQVF 301 (366)
Q Consensus 236 v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 301 (366)
|.+++|+ ++.++ +++.|+.|++||+.+++... .+. +|...+..++|+ |++++|++|+.||.|+
T Consensus 258 v~~v~~sp~~~~l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 258 INQIAFNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN--ALGKKLFAGFTDGVIR 334 (343)
T ss_dssp EEEEEECSSSCEE-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC--SSSCCEEEEETTSEEE
T ss_pred EEEEEECCCCCEE-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC--CCCCeEEEecCCceEE
Confidence 9999999 66655 45668889999998776543 333 566666666665 9999999999999999
Q ss_pred EEEeecCc
Q 017773 302 VYDVRWGE 309 (366)
Q Consensus 302 iwd~~~~~ 309 (366)
+|+++++.
T Consensus 335 ~w~~~~g~ 342 (343)
T 2xzm_R 335 TFSFETSA 342 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEccC
Confidence 99998653
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=271.54 Aligned_cols=280 Identities=19% Similarity=0.278 Sum_probs=226.6
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
..++|+||+++ +||+| .|++|+|||+.+++... .+.. .+|...|++++|+|+ +++|++|+.||+|
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~---~~~~--------~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ---LLQM--------EQPGEYISSVAWIKE--GNYLAVGTSSAEV 91 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE---EEEC--------CSTTCCEEEEEECTT--SSEEEEEETTSEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE---EEEe--------cCCCCeEEEEEECCC--CCEEEEEECCCcE
Confidence 35789999986 77776 49999999998876543 2221 235568999999999 9999999999999
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
++||+++++.+..+..|.. .+.++.+. +..+ ++++.++.+++|+... ....+..+. +|...+..+.+.+++ .
T Consensus 92 ~iw~~~~~~~~~~~~~h~~-~~~~~~~~--~~~l-~s~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~-~ 163 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSA-RVGSLSWN--SYIL-SSGSRSGHIHHHDVRV-AEHHVATLS--GHSQEVCGLRWAPDG-R 163 (318)
T ss_dssp EEEETTTTEEEEEEECCSS-CEEEEEEE--TTEE-EEEETTSEEEEEETTS-SSCEEEEEE--CCSSCEEEEEECTTS-S
T ss_pred EEeecCCceeEEEecCccc-eEEEeecC--CCEE-EEEecCCceEeeecCC-CceeEEEEc--CccCceEEEEEcCCC-C
Confidence 9999999999999999887 77766654 4544 9999999999999882 234444444 677799999999998 8
Q ss_pred EEEEEecCCeEEEEecCCCCC---CeeEeecccCcEEEEEEc--CCCEE--EEEeCCCcEEEEecCCCceeeeeecccce
Q 017773 204 LVAAGCADKKAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL--DVDTL--VTAGTDGCLKLWNVNDSRVIRTYKGHVNN 276 (366)
Q Consensus 204 ~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~--~~~~l--~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (366)
++++++.|+.|++||++++.. .......+...|..+.++ ....+ ++++.++.|++||.+......... +...
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~ 242 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ 242 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee
Confidence 999999999999999987522 345556688899999997 34443 466788999999999887766655 4456
Q ss_pred eeeEEEEEecCCCeEEEe--cCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEE
Q 017773 277 RNFVGLSVWRHGGLLGCG--SETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLH 354 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 354 (366)
+..+.+. |++..++++ +.|+.|++||+++++++..+ .+|.+.|++++|+| ++++|++|+.||+|+
T Consensus 243 v~~~~~~--~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--------~gH~~~V~~l~~sp---dg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 243 VCSILWS--PHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSP---DGATVASAAADETLR 309 (318)
T ss_dssp EEEEEEE--TTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECT---TSSCEEEEETTTEEE
T ss_pred eeeeeec--ccccceEEEEEcCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcC---CCCEEEEEecCCeEE
Confidence 6666666 888877654 47999999999999988776 67999999999999 888999999999999
Q ss_pred EEEecc
Q 017773 355 VFVGKK 360 (366)
Q Consensus 355 iw~~~~ 360 (366)
|||+..
T Consensus 310 iWd~~~ 315 (318)
T 4ggc_A 310 LWRCFE 315 (318)
T ss_dssp EECCSC
T ss_pred EEECCC
Confidence 999865
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-39 Score=298.62 Aligned_cols=256 Identities=19% Similarity=0.283 Sum_probs=213.7
Q ss_pred cCCCc-eEEEEECC--CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 40 AVSDS-IGVIEFDP--SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 40 ~h~~~-i~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
+|.+. |++++|+| ++++||+|+.||.|++|++.++...... .......+..|..+|.+++|+|+ +++|++
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~ 133 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV-----EVNVKSEFQVLAGPISDISWDFE--GRRLCV 133 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE-----EEEEEEEEECCSSCEEEEEECTT--SSEEEE
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccc-----cccccchhhcccccEEEEEEeCC--CCEEEE
Confidence 48999 99999999 9999999999999999999765211100 00111234456788999999999 999999
Q ss_pred EcCC----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC--
Q 017773 117 GDYD----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS-- 190 (366)
Q Consensus 117 ~~~d----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~-- 190 (366)
++.+ +.|.+|| .++....+..|.. .|.+++|+|+++.++++++.|+.|++||+. +.+.+..+. .|..
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~--~~~~~~ 206 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQGP--PFKFSASDR--THHKQG 206 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEETT--TBEEEEEEC--SSSCTT
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCc-cEEEEEECCCCCcEEEEEeCCCcEEEEeCC--Ccceeeeec--ccCCCC
Confidence 9887 6888887 5677888888887 999999999998666999999999999998 777777776 5667
Q ss_pred -CeEEEEEcCC-CCcEEEEEecCCeEEEEecCCCCCCeeEe-e---cccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q 017773 191 -AVCCVEFHPF-GSSLVAAGCADKKAYAYDVRKMVDPVLVF-D---GHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 191 -~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
.|.+++|+|+ + .++++++.|+.|++||++++ +.+..+ . .|...|.+++|+++.+|++++.|+.|++||++++
T Consensus 207 ~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 207 SFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CCEEEEEECSTTC-CEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC
Confidence 8999999999 7 89999999999999999987 677777 5 8999999999997789999999999999999999
Q ss_pred ceeeeeeccc----ceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 265 RVIRTYKGHV----NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 265 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
+.+..+..+. ..+..+.+ +++.++++++.||.|++||+.+++++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEE---EETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred cEEEEEcCCCCcccCceeEEEe---CCCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 9999888763 33333333 48999999999999999999987776655
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.2e-39 Score=284.96 Aligned_cols=277 Identities=18% Similarity=0.320 Sum_probs=237.0
Q ss_pred cCCCce-EEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSI-GVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|.+.| .++ ++++++|++|+.||.|++||+.+++... .+.+|...|.+++|+ +.++++|+
T Consensus 116 ~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~-------------~~~~h~~~v~~~~~~----~~~l~s~~ 176 (445)
T 2ovr_B 116 GHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLR-------------TLVGHTGGVWSSQMR----DNIIISGS 176 (445)
T ss_dssp CSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEE-------------ECCCCSSCEEEEEEE----TTEEEEEE
T ss_pred ccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEE-------------EEcCCCCCEEEEEec----CCEEEEEe
Confidence 477765 554 4568999999999999999998765432 234567789999998 45999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
.||.|++||+.+++.+..+..|.. .|.+++|+ ++.+ ++|+.||.|++||+. +++.+..+. +|...+.++++
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l-~s~s~dg~i~~wd~~--~~~~~~~~~--~~~~~v~~~~~- 247 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHTS-TVRCMHLH--EKRV-VSGSRDATLRVWDIE--TGQCLHVLM--GHVAAVRCVQY- 247 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSS-CEEEEEEE--TTEE-EEEETTSEEEEEESS--SCCEEEEEE--CCSSCEEEEEE-
T ss_pred CCCeEEEEECCcCcEEEEECCCCC-cEEEEEec--CCEE-EEEeCCCEEEEEECC--CCcEEEEEc--CCcccEEEEEE-
Confidence 999999999999999999998887 99999996 3445 999999999999999 778888776 67779999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
++ ..+++|+.||.|++||+++. +.+..+.+|...|.++.| ++.++++++.|+.|++||+++++.+..+.+|...+.
T Consensus 248 -~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 248 -DG-RRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp -CS-SCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred -CC-CEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 44 68999999999999999987 688888999999999999 788999999999999999999999999999987766
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
.+.+ +++++++|+.||.|++||+++++.+..+... ..|...|.+++|++ .+|++++.||.|++|++
T Consensus 324 ~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 324 GMEL----KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-----NKHQSAVTCLQFNK-----NFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEEE----ETTEEEEEETTSCEEEEETTTCCEEEEECST-----TSCSSCEEEEEECS-----SEEEEEETTSEEEEEET
T ss_pred EEEE----eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-----CCCCCCEEEEEECC-----CEEEEEeCCCeEEEEEC
Confidence 5544 4789999999999999999999888776421 34788999999954 59999999999999999
Q ss_pred cccC
Q 017773 359 KKKP 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+++.
T Consensus 390 ~~~~ 393 (445)
T 2ovr_B 390 KTGE 393 (445)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8754
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.8e-40 Score=278.14 Aligned_cols=251 Identities=18% Similarity=0.225 Sum_probs=200.3
Q ss_pred ccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 39 AAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|..+|.+++|+|+.++++|++|+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----------LIADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----------EEEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----------EEEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 359999999999999999999999999999998764311 112345677899999998632378999999
Q ss_pred CCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCcee-EeecCCCCCCCeE
Q 017773 119 YDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCV-STVQPSASRSAVC 193 (366)
Q Consensus 119 ~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~~~~~i~ 193 (366)
.|++|++||+++++ ....+..|.. .|.+++|+|+ +..+ ++|+.|+.|++||++ ..... .......|...+.
T Consensus 79 ~D~~v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~g~~l-asgs~D~~i~lwd~~--~~~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKSHEHAGHDS-SVNSVCWAPHDYGLIL-ACGSSDGAISLLTYT--GEGQWEVKKINNAHTIGCN 154 (316)
T ss_dssp TTSCEEEECCSSSCCCEEEEECCCSS-CCCEEEECCTTTCSCE-EEECSSSCEEEEEEC--SSSCEEECCBTTSSSSCBC
T ss_pred CCCEEEEEECCCCcceEEEEccCCCC-ceEEEEECCCCCCcEE-EEEcCCCCEEEEecC--CCCCcceeeeeccccCCcc
Confidence 99999999998873 5566777877 9999999998 4555 999999999999998 33221 1223346778999
Q ss_pred EEEEcCCC----------------CcEEEEEecCCeEEEEecCCCC--CCeeEeecccCcEEEEEEc-CC----CEEEEE
Q 017773 194 CVEFHPFG----------------SSLVAAGCADKKAYAYDVRKMV--DPVLVFDGHRKTVTYIRFL-DV----DTLVTA 250 (366)
Q Consensus 194 ~~~~~~~~----------------~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~-~~----~~l~~~ 250 (366)
+++|+|+. ..+|++|+.|+.|++||++... ++...+.+|...|.+++|+ ++ .+|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 99999973 2589999999999999997542 2456778999999999998 54 789999
Q ss_pred eCCCcEEEEecCCCc----eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 251 GTDGCLKLWNVNDSR----VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.|++|++||+++.. ....+..|...+..++|+ |++++|++++.|+.|++|+..
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS--ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC--TTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc--CCCCEEEEEcCCCeEEEEEEC
Confidence 999999999997631 234456677777777776 999999999999999999986
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.3e-41 Score=282.50 Aligned_cols=252 Identities=16% Similarity=0.209 Sum_probs=201.5
Q ss_pred eeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEE
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQ 168 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~ 168 (366)
+.+|...|++++|+|+ +++|++|+.|++|++||+.++. .+..+.+|.. +|.+++|++. +..| ++|+.|++|+
T Consensus 9 ~~~H~~~V~~v~~s~~--g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~~~~~~l-~s~s~D~~v~ 84 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYY--GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHPMYGNIL-ASCSYDRKVI 84 (316)
T ss_dssp -----CCEEEEEECGG--GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCGGGSSCE-EEEETTSCEE
T ss_pred cccccCeEEEeeEcCC--CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCCCCCCEE-EEEECCCEEE
Confidence 4567889999999999 9999999999999999998764 4567888887 9999999863 5655 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC-CcEEEEEecCCeEEEEecCCCCCC--eeEeecccCcEEEEEEc-C-
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG-SSLVAAGCADKKAYAYDVRKMVDP--VLVFDGHRKTVTYIRFL-D- 243 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~-~- 243 (366)
+||++....+....+. +|...|.+++|+|++ ..+|++|+.|+.|++||++..... ...+.+|...+.+++|+ +
T Consensus 85 iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 85 IWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 9999822223444444 788899999999982 279999999999999999875221 34556788999999998 4
Q ss_pred ----------------CCEEEEEeCCCcEEEEecCCC---ceeeeeecccceeeeEEEEEecCC----CeEEEecCCCeE
Q 017773 244 ----------------VDTLVTAGTDGCLKLWNVNDS---RVIRTYKGHVNNRNFVGLSVWRHG----GLLGCGSETNQV 300 (366)
Q Consensus 244 ----------------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i 300 (366)
+.+|++++.|+.|++||++.. +++..+.+|...|..++|+ |++ .+|++++.|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s--p~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA--PSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC--CCSSCSCCEEEEEETTCEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec--CCCCCCCceEEEEcCCCeE
Confidence 368999999999999999765 4677889999998888877 876 889999999999
Q ss_pred EEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 301 FVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 301 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++|++++...... .......|...|.+++|+| ++++|++++.||.|++|+..
T Consensus 241 ~iw~~~~~~~~~~----~~~~~~~~~~~v~~v~~sp---~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTW----SPKLLHKFNDVVWHVSWSI---TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCC----BCCEEEECSSCEEEEEECT---TTCCEEEEESSSCEEEEEEC
T ss_pred EEEEccCccccch----hhhhhhcCCCcEEEEEEcC---CCCEEEEEcCCCeEEEEEEC
Confidence 9999976321000 0001134788999999999 88899999999999999975
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-39 Score=278.72 Aligned_cols=296 Identities=16% Similarity=0.277 Sum_probs=212.9
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++||+|+.||.|++|++.+..... .....+.+|..+|++++|+|..++.+|++++.
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---------ELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---------EEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---------eecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 499999999999999999999999999999998654321 11123445678999999999211899999999
Q ss_pred CCcEEEEeCCCC---------ceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEee-----
Q 017773 120 DGVVMEYDLEKK---------VPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTV----- 183 (366)
Q Consensus 120 dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~----- 183 (366)
||.|++||+.++ +....+..|.. .|.+++|+|+ +..+ ++++.||.|++||++ +.+.+..+
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKL-ACLGNDGILRLYDAL--EPSDLRSWTLTSE 155 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEE-EEEETTCEEEEEECS--STTCTTCCEEEEE
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEE-EEecCCCcEEEecCC--ChHHhcccccccc
Confidence 999999999886 45667777777 9999999998 7776 999999999999998 44432222
Q ss_pred ------cCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCCCC--eeEeecccCcEEEEEEc-CC----CEEE
Q 017773 184 ------QPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMVDP--VLVFDGHRKTVTYIRFL-DV----DTLV 248 (366)
Q Consensus 184 ------~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~-~~----~~l~ 248 (366)
....+...+.+++|+|+ ...++++++.++.+.+|+.... +. +..+.+|...|++++|+ ++ ++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 12256678999999997 2379999999999988877665 33 66777899999999999 65 7999
Q ss_pred EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec----CCCeEEEEEeecCceEEEEecccccccCC
Q 017773 249 TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS----ETNQVFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 249 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
+++.||.|++||++++........+.......... +....+..+. ....+.+|+....+.+..+ .+
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 304 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS--ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--------DD 304 (351)
T ss_dssp EEETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEE--------CT
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCC--cccccccccccccccceeeeecccccccEEEEE--------ec
Confidence 99999999999998875554443333332222222 3444444333 3344556655555555444 67
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
|...|++++|+| ++++|++++.||.|++|+++.+.
T Consensus 305 h~~~v~~~~~s~---~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 305 HNGEVWSVSWNL---TGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp TSSCEEEEEECS---SSCCEEEEETTSCEEEEEECTTS
T ss_pred ccccEEEEEEcC---CCCEEEEecCCCcEEEEecCcCc
Confidence 899999999999 88899999999999999998743
No 77
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-39 Score=319.69 Aligned_cols=285 Identities=17% Similarity=0.242 Sum_probs=248.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|+|++||+|+.||.|++||+.+++... . +.+|...|.+++|+|+ +++|++++.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~----------~~~h~~~v~~~~~s~~--~~~l~s~~~ 677 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---D----------IKAHEDEVLCCAFSSD--DSYIATCSA 677 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---E----------ECCCSSCEEEEEECTT--SSEEEEEET
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---E----------eccCCCCEEEEEEecC--CCEEEEEeC
Confidence 499999999999999999999999999999998765433 2 3356678999999999 999999999
Q ss_pred CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCC-CceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc
Q 017773 120 DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGD-PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH 198 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (366)
|+.|++||+.+++.+..+..|.. .|.+++|+|++ ..++++|+.|+.|++||+. ++++...+. +|...|.+++|+
T Consensus 678 d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~--~~~~~~~~~--~h~~~v~~~~~s 752 (1249)
T 3sfz_A 678 DKKVKIWDSATGKLVHTYDEHSE-QVNCCHFTNKSNHLLLATGSNDFFLKLWDLN--QKECRNTMF--GHTNSVNHCRFS 752 (1249)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSCCEEEEEETTSCEEEEETT--SSSEEEEEC--CCSSCEEEEEEC
T ss_pred CCeEEEEECCCCceEEEEcCCCC-cEEEEEEecCCCceEEEEEeCCCeEEEEECC--Ccchhheec--CCCCCEEEEEEe
Confidence 99999999999999999999887 99999999963 3455899999999999999 788887776 677899999999
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEee-------------cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-------------GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS 264 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 264 (366)
|++ .++++++.||.|++||+++. .....+. .+...+.+++|+ ++..+++++ ++.+.+||+.++
T Consensus 753 p~~-~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 753 PDD-ELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTS 829 (1249)
T ss_dssp SST-TEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTC
T ss_pred cCC-CEEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCC
Confidence 998 79999999999999999876 3333332 123468889999 888888877 789999999999
Q ss_pred ceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceE
Q 017773 265 RVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECT 343 (366)
Q Consensus 265 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 343 (366)
..+..+. +|...+..++++ |++.++++++.||.|++||+.+++....+ .+|...|.+++|+| ++++
T Consensus 830 ~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~h~~~v~~v~~sp---dg~~ 896 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFS--PYDHLAVIALSQYCVELWNIDSRLKVADC--------RGHLSWVHGVMFSP---DGSS 896 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEEC--SSTTEEEEECSSSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECT---TSSE
T ss_pred CceeEEcCCCCCceEEEEEc--CCCCEEEEEeCCCeEEEEEcCCCceeeec--------CCCccceEEEEECC---CCCE
Confidence 8888776 788888888777 99999999999999999999998887665 57899999999999 8889
Q ss_pred EEEeCCCCcEEEEEecc
Q 017773 344 LVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 344 l~s~~~dg~i~iw~~~~ 360 (366)
|++++.||.|++|++.+
T Consensus 897 l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEEETTSCEEEEEHHH
T ss_pred EEEEeCCCeEEEEEccc
Confidence 99999999999999764
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-39 Score=305.67 Aligned_cols=321 Identities=17% Similarity=0.225 Sum_probs=253.4
Q ss_pred cccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecc
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
+..+.+.+..+.|++++..++.+..++.+ .|.++|++++|+|++++|++|+.||.|++||+.+++
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34455566666666666666655544421 289999999999999999999999999999998765
Q ss_pred cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEecc-C
Q 017773 76 VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSK-G 153 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~-~ 153 (366)
... . +.+|...|.+++|+|+ +.+|++++.||.|++||+.++ .....+..|.. .|.+++|+| +
T Consensus 89 ~~~---~----------~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~ 152 (814)
T 3mkq_A 89 KVV---D----------FEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKD 152 (814)
T ss_dssp EEE---E----------EECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTE
T ss_pred EEE---E----------EecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCC
Confidence 433 2 3345678999999999 999999999999999999887 56677777776 999999999 5
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC--CCCcEEEEEecCCeEEEEecCCCCCCeeEeec
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP--FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 231 (366)
+..+ ++++.||.|++||+. .......+.. .+...+.+++|+| ++ .++++++.||.|++||++++ +.+..+.+
T Consensus 153 ~~~l-~~~~~dg~v~vwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~ 226 (814)
T 3mkq_A 153 PSTF-ASGCLDRTVKVWSLG--QSTPNFTLTT-GQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTK-SCVATLEG 226 (814)
T ss_dssp EEEE-EEEETTSEEEEEETT--CSSCSEEEEC-CCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CCEE-EEEeCCCeEEEEECC--CCcceeEEec-CCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCC-cEEEEEcC
Confidence 5555 999999999999998 5555555543 3446899999999 77 79999999999999999987 67888889
Q ss_pred ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC--eEEEecCCCeEEEEEeecC
Q 017773 232 HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG--LLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 232 ~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 308 (366)
|...|.+++|+ ++.++++++.||.|++||+.+++.+..+..|...+..++++ |++. +++++ .++.+.+|++..+
T Consensus 227 ~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH--PTGRKNYIASG-FDNGFTVLSLGND 303 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC--TTCGGGEEEEE-ETTEEEEEECSCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc--cCCCceEEEEE-eCCCEEEEEcCCC
Confidence 99999999999 88999999999999999999999999999998888877777 8887 35555 5677899987654
Q ss_pred ceEEEEeccc-----------------------------------ccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE
Q 017773 309 EPVWVHDFEP-----------------------------------VTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 309 ~~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
.+...+.... ......+...+.+++|+| +|++|++++ ||.+
T Consensus 304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~la~~~-~~~~ 379 (814)
T 3mkq_A 304 EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP---NGRFVTVVG-DGEY 379 (814)
T ss_dssp SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT---TSSEEEEEE-TTEE
T ss_pred CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC---CCCEEEEec-CCEE
Confidence 4322221000 001133455688999999 888888887 8889
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
.+|++..
T Consensus 380 ~i~~~~~ 386 (814)
T 3mkq_A 380 VIYTALA 386 (814)
T ss_dssp EEEETTT
T ss_pred EEEECcc
Confidence 9998653
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-38 Score=276.01 Aligned_cols=274 Identities=21% Similarity=0.311 Sum_probs=226.1
Q ss_pred CcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 10 PQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 10 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
.+.....+..+..|+..++......... |...|++++|+|++++|++|+.||.|++||+.+++... .
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~------- 171 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR---T------- 171 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECC---TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---E-------
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecC---CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE---E-------
Confidence 3455567788889998887766554433 89999999999999999999999999999998754332 2
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC-CCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE-KKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
+.+|...|.+++|+ +.+|++++.||.|++||+. .+.....+..|.. .|.+++|+|+++.+ ++++.|+.|+
T Consensus 172 ---~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~s~~~d~~v~ 242 (401)
T 4aez_A 172 ---MAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-EVCGLAWRSDGLQL-ASGGNDNVVQ 242 (401)
T ss_dssp ---ECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEE-EEEETTSCEE
T ss_pred ---ecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-CeeEEEEcCCCCEE-EEEeCCCeEE
Confidence 33556789999995 5699999999999999998 4566777888887 99999999988877 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
+||++ +++....+. .|...|.+++|+|++..++++|+ .|+.|++||++++ +.+..+. +...+.+++|+ ++.
T Consensus 243 iwd~~--~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 243 IWDAR--SSIPKFTKT--NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEETT--CSSEEEEEC--CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EccCC--CCCccEEec--CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCC
Confidence 99999 677777776 57779999999998878888876 7999999999987 5666665 67889999999 889
Q ss_pred EEEEE--eCCCcEEEEecCCCceee--eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEE
Q 017773 246 TLVTA--GTDGCLKLWNVNDSRVIR--TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 246 ~l~~~--~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 313 (366)
+++++ +.||.|++||+.+++... .+.+|...+..++++ |++.+|++++.||.|++|++.+++.+..
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS--PDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC--TTSSEEEEECTTSEEEEEECCC------
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99884 489999999999865444 467888888888777 9999999999999999999998887654
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=275.32 Aligned_cols=282 Identities=15% Similarity=0.234 Sum_probs=227.2
Q ss_pred cCCCceEEEEECCC---CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 40 AVSDSIGVIEFDPS---DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 40 ~h~~~i~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
+|.+.|++++|+|+ |++|++|+.||.|++|++.+.... ....+.+|...|.+++|+|+ +++|++
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~--~~~l~s 103 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------IPKAQQMHTGPVLDVCWSDD--GSKVFT 103 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------EEEEEEECSSCEEEEEECTT--SSEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------eEEEeccccCCEEEEEECcC--CCEEEE
Confidence 49999999999999 699999999999999999862211 11234556789999999998 999999
Q ss_pred EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEe--ccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 117 GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDY--SKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
++.||.|++||+.+++... +..|.. .|.+++| ++++..+ ++++.||.|++||++ +++.+..+.... .+.+
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~---~~~~ 175 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCV-MTGSWDKTLKFWDTR--SSNPMMVLQLPE---RCYC 175 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEE-EEEETTSEEEEECSS--CSSCSEEEECSS---CEEE
T ss_pred EcCCCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEE-EEccCCCcEEEEECC--CCcEEEEEecCC---CceE
Confidence 9999999999999888666 445665 9999999 7877766 999999999999999 777777776432 6777
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-cccCcEEEEEEc-CCCE----EEEEeCCCcEEEEecCCC---c
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-GHRKTVTYIRFL-DVDT----LVTAGTDGCLKLWNVNDS---R 265 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~----l~~~~~d~~i~iwd~~~~---~ 265 (366)
+.+.+ ..+++++.++.+++||++.......... .+...+.++.+. +... +++++.||.|++||++.. .
T Consensus 176 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 176 ADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred EEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 77765 4778888999999999987643333322 233455666654 3333 999999999999999987 6
Q ss_pred eeeeeecccc------------eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEE
Q 017773 266 VIRTYKGHVN------------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVC 333 (366)
Q Consensus 266 ~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 333 (366)
.+..+..|.. .+..++++ |++++|++++.||.|++||+.+++++..+ .+|...|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~ 322 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH--PVHGTLATVGSDGRFSFWDKDARTKLKTS--------EQLDQPISACC 322 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEEC--TTTCCEEEEETTSCEEEEETTTTEEEEEC--------CCCSSCEEEEE
T ss_pred cceeeeeeecccccccccccccceEEEEEe--cCCCEEEEEccCCeEEEEECCCCcEEEEe--------cCCCCCceEEE
Confidence 6778888776 56666666 99999999999999999999999887665 56889999999
Q ss_pred eeccCCCceEEEEeCCCCcEEEEEe
Q 017773 334 WRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
|+| ++++|++++.|+..+.|++
T Consensus 323 ~s~---~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 323 FNH---NGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ECT---TSSCEEEEECCCSTTCGGG
T ss_pred ECC---CCCeEEEEecccccccccc
Confidence 999 8889999999886555543
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-38 Score=279.33 Aligned_cols=289 Identities=16% Similarity=0.234 Sum_probs=230.2
Q ss_pred ceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEec-CCCCcEEEEEcCCC
Q 017773 44 SIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKP-GTSGRVLGSGDYDG 121 (366)
Q Consensus 44 ~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg 121 (366)
....++++|+.. ++++++.||.|+||++....... .....+.+|.+.|++++|+| + +.+|++|+.||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------~~~~~~~~h~~~V~~~~~~p~~--~~~l~s~s~dg 104 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------KNVPLVCGHTAPVLDIAWCPHN--DNVIASGSEDC 104 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------TTCCCBCCCSSCEEEEEECTTC--TTEEEEEETTS
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------CCCceEecCCCCEEEEEeCCCC--CCEEEEEeCCC
Confidence 345688999875 44457889999999986532211 11123456778999999999 7 99999999999
Q ss_pred cEEEEeCCCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 122 VVMEYDLEKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 122 ~i~iw~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
.|++||+.++ +.+..+.+|.. .|.+++|+|+++.++++++.||.|++||++ +++.+..+....|...|.+
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIVAWHPTAQNVLLSAGCDNVILVWDVG--TGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSS-CEEEEEECSSBTTEEEEEETTSCEEEEETT--TTEEEEEECTTTCCSCEEE
T ss_pred eEEEEEccCCCCccccCCceEEecCCCC-eEEEEEECcCCCCEEEEEcCCCEEEEEECC--CCCccEEEecCCCCCceEE
Confidence 9999999987 56778888887 999999999986566999999999999999 7888888743467889999
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe-ecccCc-EEEEEEc-CCCEEEEE---eCCCcEEEEecCCCce-e
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF-DGHRKT-VTYIRFL-DVDTLVTA---GTDGCLKLWNVNDSRV-I 267 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~-~~~~l~~~---~~d~~i~iwd~~~~~~-~ 267 (366)
++|+|++ .+|++++.|+.|++||++++ +.+..+ ..|.+. +.++.|+ ++.+|+++ +.|+.|++||+++++. +
T Consensus 182 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~ 259 (402)
T 2aq5_A 182 VDWSRDG-ALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259 (402)
T ss_dssp EEECTTS-SCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred EEECCCC-CEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence 9999998 79999999999999999987 566666 678766 8999999 88888888 7899999999998754 3
Q ss_pred eeee-cccceeeeEEEEEecCCCeEE-EecCCCeEEEEEeecCce-EEEEecccccccCCCCceeeEEEeeccCCCceEE
Q 017773 268 RTYK-GHVNNRNFVGLSVWRHGGLLG-CGSETNQVFVYDVRWGEP-VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL 344 (366)
Q Consensus 268 ~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 344 (366)
.... .+...+..++++ |++++|+ +|+.||.|++||+.++++ +..+.. ..|...|.+++|+| ++.++
T Consensus 260 ~~~~~~~~~~v~~~~~s--~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~------~~~~~~v~~~~~sp---~~~~~ 328 (402)
T 2aq5_A 260 SLQELDTSSGVLLPFFD--PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM------FSSKESQRGMGYMP---KRGLE 328 (402)
T ss_dssp EEEECCCCSSCEEEEEE--TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE------ECCSSCCSEEEECC---GGGSC
T ss_pred eEEeccCCCceeEEEEc--CCCCEEEEEEcCCCeEEEEEecCCCcceEeecc------cccCCcccceEEec---ccccc
Confidence 3333 355566666665 9999986 566899999999998874 333321 12568999999999 77777
Q ss_pred EEeCCCCcEEEEEeccc
Q 017773 345 VAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 345 ~s~~~dg~i~iw~~~~~ 361 (366)
++ .|+.+++|++.++
T Consensus 329 ~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 329 VN--KCEIARFYKLHER 343 (402)
T ss_dssp GG--GTEEEEEEEEETT
T ss_pred ee--cceeEEEEEcCCC
Confidence 65 4668999998764
No 82
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=275.45 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=205.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.+.|++++|+|++++||+|+.||.|++|++..... .....+.+|..+|++++|+|+.++.+|++++.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------EEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------eeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 4999999999999999999999999999999973211 11123445678899999986544799999999
Q ss_pred CCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 120 DGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 120 dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
||.|++||+.+++ ....+..|.. .|.+++|+|+ +..+ ++++.|+.|++||++ ............|...|.++
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l-~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLL-LVASSDGKVSVVEFK--ENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEE-EEEETTSEEEEEECC--TTSCCCEEEEECCTTCEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCc-ceEEEEeCCCCCCCEE-EEecCCCcEEEEecC--CCCceeeEEecCCCCceEEE
Confidence 9999999999886 6667777776 9999999998 6766 999999999999998 44333322333677899999
Q ss_pred EEcC-------------CCCcEEEEEecCCeEEEEecCCCCC---CeeEeecccCcEEEEEEc-C---CCEEEEEeCCCc
Q 017773 196 EFHP-------------FGSSLVAAGCADKKAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL-D---VDTLVTAGTDGC 255 (366)
Q Consensus 196 ~~~~-------------~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~ 255 (366)
+|+| ++ .++++|+.|+.|++||+++... ....+.+|...|.+++|+ + +.+|++++.||.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp EECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 9999 46 8999999999999999987632 345677899999999999 6 789999999999
Q ss_pred EEEEecCCCc-----eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 256 LKLWNVNDSR-----VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 256 i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
|++||++++. .+.....|...+..++|+ |++++|++++.||.|++|++..+
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC--SSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEc--CCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999864 222233466777776666 99999999999999999999854
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-37 Score=264.33 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=220.3
Q ss_pred cccccccceeeeeecCC-CceeeecCCCCc--------------------cCCCceEEEEECCCCCEEEEeecCCeEEEE
Q 017773 11 QAETTNERARCEWDFNL-RTTVSSSSSPNA--------------------AVSDSIGVIEFDPSDSVFATGGIARKIRIY 69 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~--------------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw 69 (366)
+..|.+.+..+.|+|+. ..++++..|+.+ +|...|++++|+|++++|++|+.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 34577777777887764 455666665532 389999999999999999999999999999
Q ss_pred EceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE-eeecCCCCceeeE
Q 017773 70 NIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF-ERDEHGGRRVWSV 148 (366)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~i 148 (366)
+........ . ...+...+..+.+++. +.+|++++.|+.+++||+....... ....|.. .+..+
T Consensus 114 ~~~~~~~~~---~----------~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~ 177 (340)
T 4aow_A 114 DLTTGTTTR---R----------FVGHTKDVLSVAFSSD--NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE-WVSCV 177 (340)
T ss_dssp ETTTTEEEE---E----------EECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSSCSS-CEEEE
T ss_pred eecccceee---e----------ecCCCCceeEEEEeec--CccceeecCCCeEEEEEeCCCceEEEEeccccC-cccce
Confidence 987654322 1 2223456888999998 9999999999999999998765443 3445555 89999
Q ss_pred EeccCCC-ceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee
Q 017773 149 DYSKGDP-VLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 149 ~~~~~~~-~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 227 (366)
+|++++. .++++++.|+.|++||++ ..+....+. +|...|.+++|+|++ .+|++|+.|+.|++||+++. +.+.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~~~--~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~-~~~~ 251 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLA--NCKLKTNHI--GHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEG-KHLY 251 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETT--TTEEEEEEC--CCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTT-EEEE
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECC--CCceeeEec--CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccC-ceee
Confidence 9998754 345889999999999999 777777776 677899999999998 89999999999999999987 5666
Q ss_pred EeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeee---------cccceeeeEEEEEecCCCeEEEecCCC
Q 017773 228 VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYK---------GHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 228 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
.+. +...+.++.|+++..+++++.|+.|++||++++..+..+. +|...|..++|+ |++++|++|+.||
T Consensus 252 ~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~Dg 328 (340)
T 4aow_A 252 TLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS--ADGQTLFAGYTDN 328 (340)
T ss_dssp EEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC--TTSSEEEEEETTS
T ss_pred eec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC--CCCCEEEEEeCCC
Confidence 665 4568999999966677888889999999999887766554 466777777766 9999999999999
Q ss_pred eEEEEEeecCc
Q 017773 299 QVFVYDVRWGE 309 (366)
Q Consensus 299 ~i~iwd~~~~~ 309 (366)
.|+|||+++|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999885
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-37 Score=272.97 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=224.7
Q ss_pred CcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 10 PQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 10 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
+.++...+..++.|+..++.+..... ..+|...|++|+|+|+|++||+|+.||.|+|||+.+++... .
T Consensus 117 n~lAvgld~tV~lWd~~tg~~~~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~---~------- 184 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDILQLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---N------- 184 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEE--CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---E-------
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEE--ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE---E-------
Confidence 34556668899999999887654432 12388899999999999999999999999999998765433 2
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
+.+|...+.+++|+ +.+|++|+.|+.+++||.... ..+..+..|.. .+..+.++|++..+ ++++.|+.++
T Consensus 185 ---~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~~l-~s~~~D~~v~ 255 (420)
T 4gga_A 185 ---MTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHL-ASGGNDNLVN 255 (420)
T ss_dssp ---ECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEE-EEEETTSCEE
T ss_pred ---EeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEeccccc-ceeeeeecCCCCee-eeeeccccce
Confidence 33456788888876 569999999999999999865 45567778877 99999999999987 9999999999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEE--ecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAG--CADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
+|+................|...|.+++|+|.+..+++++ +.|+.|++||++++ +....+..| ..+.++.|+ +++
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~-~~v~~~~~~~~~~ 333 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYK 333 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECS-SCEEEEEEETTTT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccc-cceeeeeecCCCC
Confidence 9999832222111122236777999999999987887764 47999999999987 566666644 568888888 778
Q ss_pred EEEEEe--CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEE
Q 017773 246 TLVTAG--TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 246 ~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 313 (366)
.+++++ .|+.|++||+.+++++.++.+|...|..++|+ |+|++|++|+.|++|++||+....+...
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s--pdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCCCCccch
Confidence 777655 79999999999999999999999998888877 9999999999999999999987655543
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.9e-38 Score=274.06 Aligned_cols=276 Identities=18% Similarity=0.210 Sum_probs=223.8
Q ss_pred ccccccceeeeeecCCCc------eeeecCCCCccCCCceEEEEECCC----C---CEEEEeecCCeEEEEEceeccccc
Q 017773 12 AETTNERARCEWDFNLRT------TVSSSSSPNAAVSDSIGVIEFDPS----D---SVFATGGIARKIRIYNIKSVLVDH 78 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~h~~~i~~~~~s~~----~---~~l~t~~~dg~i~iw~~~~~~~~~ 78 (366)
.....+..+..|+.++.. ...... .|...|++++|+|+ + ++|++++.||.|++|++.+.....
T Consensus 30 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 30 VSCSGDGYLKVWDNKLLDNENPKDKSYSHF----VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 105 (397)
T ss_dssp EEEETTSEEEEEESBCCTTCCGGGGEEEEE----CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred EEEcCCCEEEEEECCCcccccCCCcceEEe----cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc
Confidence 334456777788877665 332222 48999999999999 9 999999999999999998876421
Q ss_pred c--eeeeecCceeceeeeec--CCceeEEEEe----cCCCCcE-EEEEcCCCcEEEEeCCC------CceeE-----eee
Q 017773 79 P--VVAVVDHSKVCDYYICT--PAKLSSLKWK----PGTSGRV-LGSGDYDGVVMEYDLEK------KVPIF-----ERD 138 (366)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~~~-l~~~~~dg~i~iw~~~~------~~~~~-----~~~ 138 (366)
. ...+..|. .| ...|.+++|+ |+ +.+ |++++.||.|++||+.+ ++.+. .+.
T Consensus 106 ~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (397)
T 1sq9_A 106 KVIFEKLDLLD-------SDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 176 (397)
T ss_dssp CEEEEEECCSC-------TTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred cccceeecccc-------cccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee
Confidence 1 11222221 00 3689999999 88 999 99999999999999988 66555 563
Q ss_pred -------cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CCC---CCCeEEEEEcCCCCcEEEE
Q 017773 139 -------EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SAS---RSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 139 -------~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~~ 207 (366)
.|.. .|.+++|+|++ .+ ++++.||.|++||++ +.+.+..+.. .+| ...|.+++|+|++ .+|++
T Consensus 177 ~~~~~~~~~~~-~i~~~~~~~~~-~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~ 250 (397)
T 1sq9_A 177 GTVESPMTPSQ-FATSVDISERG-LI-ATGFNNGTVQISELS--TLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAI 250 (397)
T ss_dssp EEECCSSSSCC-CCCEEEECTTS-EE-EEECTTSEEEEEETT--TTEEEEEEECCC---CCCCCEEEEEECSST-TEEEE
T ss_pred eeeccccCCCC-CceEEEECCCc-eE-EEEeCCCcEEEEECC--CCceeEEEeccccccccCCccceEEECCCC-CEEEE
Confidence 3555 89999999998 55 999999999999999 7788877773 115 7799999999998 89999
Q ss_pred EecC---CeEEEEecCCCCCCeeEeec-------------ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 208 GCAD---KKAYAYDVRKMVDPVLVFDG-------------HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 208 ~~~d---~~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
++.| +.|++||+++. +.+..+.. |...|.+++|+ ++++|++++.||.|++||+++++++..+
T Consensus 251 ~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp EEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 9999 99999999987 67888888 99999999999 8999999999999999999999999999
Q ss_pred e------cc---------------cceeeeEEEEEecCC----------CeEEEecCCCeEEEEEeecCc
Q 017773 271 K------GH---------------VNNRNFVGLSVWRHG----------GLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 271 ~------~~---------------~~~~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~ 309 (366)
. +| ...+..++|+ |++ ++|++++.||.|++|++.+|+
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~--~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL--KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE--CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEec--cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9 77 8888888877 888 799999999999999998764
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=289.27 Aligned_cols=265 Identities=14% Similarity=0.098 Sum_probs=201.8
Q ss_pred CCCceEEEEECCCC---------CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCC
Q 017773 41 VSDSIGVIEFDPSD---------SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSG 111 (366)
Q Consensus 41 h~~~i~~~~~s~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (366)
+.+.|.+|+|+|++ ++||+|+.++.. . ..+|+ +
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------~-------------------------~~~~~--~ 173 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------E-------------------------PLNEH--L 173 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------C-------------------------ccchh--h
Confidence 57889999999987 799998866420 0 12576 8
Q ss_pred cEEEEEcCCCcEEEEeCCCCcee----EeeecCCCCceeeEEeccCC-----CceEEEecCCCcEEEeeCCCCCCce---
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPI----FERDEHGGRRVWSVDYSKGD-----PVLGASGSDDGTMQMWDPRCDGGKC--- 179 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~v~~i~~~~~~-----~~l~~~~~~dg~v~~~d~~~~~~~~--- 179 (366)
..|++++.|++|+|||+.+++.. ..+..|.+ .|.+++|+|++ ..+|++++.||+|++||+. .+..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~--~~~~~~~ 250 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII--DNATDVH 250 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC--CCSSSSS
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC--CCccccc
Confidence 89999999999999999877642 23455555 89999999972 2345999999999999997 3321
Q ss_pred --------eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEE--EEc-CC-CEE
Q 017773 180 --------VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYI--RFL-DV-DTL 247 (366)
Q Consensus 180 --------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~--~~~-~~-~~l 247 (366)
...+ .+|...|.+++|+|+ ..|++|+.||+|++||++++..+...+.+|...|+++ +|+ ++ .+|
T Consensus 251 ~~~~~~~p~~~l--~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 251 VFKMCEKPSLTL--SLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp EEECCCSCSEEE--CCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred cceeecCceEEE--EcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence 1233 367789999999985 4799999999999999997755667788999999999 456 55 799
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecccc--eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCC
Q 017773 248 VTAGTDGCLKLWNVNDSRVIRTYKGHVN--NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 325 (366)
++++.|++|++||+++++++..+.+|.. .+..++|+ |+++.+++++.|+.|++||++++..+..+ .+|
T Consensus 327 aS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs--p~~~~l~s~~~d~tv~lwd~~~~~~~~~l--------~gH 396 (524)
T 2j04_B 327 STVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC--PQIYSYIYSDGASSLRAVPSRAAFAVHPL--------VSR 396 (524)
T ss_dssp EEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE--TTTTEEEEECSSSEEEEEETTCTTCCEEE--------EEC
T ss_pred EEeccCCeEEEEECCCCCcccccccccccCcccceEeC--CCcCeEEEeCCCCcEEEEECcccccceee--------ecC
Confidence 9999999999999999988888877754 35556665 99999999999999999999988776554 458
Q ss_pred CceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 326 RGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 326 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.+.|++++|+| ++++|++|+.||+|++|++..+.+
T Consensus 397 ~~~V~sva~Sp---~g~~l~Sgs~Dgtv~lwd~~~~~~ 431 (524)
T 2j04_B 397 ETTITAIGVSR---LHPMVLAGSADGSLIITNAARRLL 431 (524)
T ss_dssp SSCEEEEECCS---SCCBCEEEETTTEEECCBSCSSTT
T ss_pred CCceEEEEeCC---CCCeEEEEECCCEEEEEechHhhc
Confidence 99999999999 888999999999999999876533
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-37 Score=268.95 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=216.3
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEee
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWD 171 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d 171 (366)
..|..+|++++|+|+ +++|++++.|+.|++||+.+++ ....+..|.. .|.+++|+|+++.+ ++++.||.|++||
T Consensus 5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l-~~~~~dg~i~vwd 80 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRI-VTCGTDRNAYVWT 80 (372)
T ss_dssp ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCCCEE-EEEcCCCeEEEEE
Confidence 346788999999999 9999999999999999999887 7888888887 99999999998877 8999999999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC---CeeEeecccCcEEEEEEc-CCCEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l 247 (366)
+. .++....+....|...|.+++|+|++ .++++++.|+.|++||++.... .......|...|.+++|+ ++++|
T Consensus 81 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 81 LK--GRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EE--TTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CC--CCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 98 66666666555788899999999998 8999999999999999998732 123335688999999999 88999
Q ss_pred EEEeCCCcEEEEec------------------CCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 248 VTAGTDGCLKLWNV------------------NDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 248 ~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
++++.|+.|++||+ ..++++..+..|...+..++++ |++++|++++.|+.|++||+++++
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS--ANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC--SSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999995 4678888888898888888777 999999999999999999999999
Q ss_pred eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
++..+ ..|...|.+++|+| ++.+|+++ .|+.|++|++..
T Consensus 236 ~~~~~--------~~~~~~v~~~~~~~---~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATL--------ASETLPLLAVTFIT---ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEE--------ECSSCCEEEEEEEE---TTEEEEEE-TTSSCEEEEEET
T ss_pred eeEEE--------ccCCCCeEEEEEec---CCCEEEEE-eCCeEEEEEccC
Confidence 88776 34778999999999 88888888 899999999987
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=270.00 Aligned_cols=254 Identities=19% Similarity=0.308 Sum_probs=212.2
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC--CCceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE--KKVPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTM 167 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v 167 (366)
.+.+|..+|++++|+|+ +++|++|+.||.|++||+. +++....+..|.. +|.+++|+++ +..+ ++++.||.|
T Consensus 6 ~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l-~s~~~dg~v 81 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTIL-ASCSYDGKV 81 (379)
T ss_dssp CEEECCCCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEE-EEEETTSCE
T ss_pred EecCCcccEEEEEEcCC--CCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEE-EEeccCCEE
Confidence 46678889999999999 9999999999999999998 5566777888887 9999999876 6666 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEcC-
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFLD- 243 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~- 243 (366)
++||+. .++.........|...|.+++|+|+ + .++++++.|+.|++||++... .....+..|...|.+++|+.
T Consensus 82 ~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 82 LIWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEcC--CCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 999999 5653233333367789999999999 7 799999999999999998863 24456678999999999983
Q ss_pred -------------CCEEEEEeCCCcEEEEecCCCc----eeeeeecccceeeeEEEEEecC---CCeEEEecCCCeEEEE
Q 017773 244 -------------VDTLVTAGTDGCLKLWNVNDSR----VIRTYKGHVNNRNFVGLSVWRH---GGLLGCGSETNQVFVY 303 (366)
Q Consensus 244 -------------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw 303 (366)
+.+|++++.|+.|++||++++. .+..+.+|...+..++|+ |+ +.+|++++.||.|++|
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC--CCCCCCCeEEEEeCCCEEEEE
Confidence 7899999999999999998764 456777898888888777 99 8999999999999999
Q ss_pred EeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 304 DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
|+++++....... .....|...|.+++|+| ++++|++++.||.|++|+++.
T Consensus 237 d~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~---~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 237 TQDNEQGPWKKTL---LKEEKFPDVLWRASWSL---SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EESSTTSCCEEEE---SSSSCCSSCEEEEEECS---SSCCEEEEESSSSEEEEEEEE
T ss_pred eCCCCCccceeee---eccccCCCcEEEEEEcC---CCCEEEEecCCCcEEEEeCCC
Confidence 9998753222111 11245788999999999 888999999999999999873
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-37 Score=271.49 Aligned_cols=296 Identities=12% Similarity=0.006 Sum_probs=225.3
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCce---------------------------------
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSK--------------------------------- 88 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------------------------------- 88 (366)
..++.+++|+|+|++|+++ .++.|++||+.+++.......+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999977766 578999999988772111112221110
Q ss_pred -----------eceeeeecCCceeEEEEecCCCCcEE-EEEcCCCcEEEEeCC--CCceeEeee--cCCCCceeeEEecc
Q 017773 89 -----------VCDYYICTPAKLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLE--KKVPIFERD--EHGGRRVWSVDYSK 152 (366)
Q Consensus 89 -----------~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~~v~~i~~~~ 152 (366)
......+|...|.+++|+|+ +++| ++++.||.|++||+. +++.+..+. .+.. .|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 159 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSK-RPNAISIAE 159 (450)
T ss_dssp -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSS-CEEEEEECT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCC-CceEEEEcC
Confidence 00112345668999999999 9886 899999999999999 788777776 3444 899999999
Q ss_pred CCCceEEEecCCCcEEEeeCCCCCCceeE--eecCCCCCCCeEEEEEcCC---CCcEEEEEecCCeEEEEecCCCCCCee
Q 017773 153 GDPVLGASGSDDGTMQMWDPRCDGGKCVS--TVQPSASRSAVCCVEFHPF---GSSLVAAGCADKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 153 ~~~~l~~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~ 227 (366)
+++.+ ++++.+|.+++|++. ..+... .....+|...|.+++|+|+ + .+|++|+.|+.|++||++++ +.+.
T Consensus 160 ~~~~l-~~~~~~g~v~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~-~~~~ 234 (450)
T 2vdu_B 160 DDTTV-IIADKFGDVYSIDIN--SIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC-FIVD 234 (450)
T ss_dssp TSSEE-EEEETTSEEEEEETT--SCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT-TCEE
T ss_pred CCCEE-EEEeCCCcEEEEecC--CcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC-ceee
Confidence 99887 899999999999998 444332 1122257779999999999 7 89999999999999999987 5555
Q ss_pred E-eecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc-------------------------ceeeeEE
Q 017773 228 V-FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-------------------------NNRNFVG 281 (366)
Q Consensus 228 ~-~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~ 281 (366)
. +.+|...|.+++|+++++|++++.|+.|++||+++++++..+..+. ..+..+
T Consensus 235 ~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i- 313 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI- 313 (450)
T ss_dssp EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE-
T ss_pred eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE-
Confidence 5 6689999999999988899999999999999999999888886431 234444
Q ss_pred EEEecCCCeEEEec-CCCeEEEEEe--ecC---ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC------
Q 017773 282 LSVWRHGGLLGCGS-ETNQVFVYDV--RWG---EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS------ 349 (366)
Q Consensus 282 ~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~------ 349 (366)
.++|++++|++++ .|+.|++|++ .++ +.+..+ ..| +.|.+++|+| ++.++++++.
T Consensus 314 -~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~--------~~~-~~v~~~~~~~---~~~~v~~~~~~~~~~~ 380 (450)
T 2vdu_B 314 -IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII--------TFP-YNVISLSAHN---DEFQVTLDNKESSGVQ 380 (450)
T ss_dssp -EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE--------ECS-SCEEEEEEET---TEEEEEECCTTCCSSC
T ss_pred -EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe--------ccC-CceEEEEecC---CcEEEEEecccCCCCC
Confidence 4559999999998 8999999999 555 333333 334 7899999999 6655555543
Q ss_pred CCcEEEEEecc
Q 017773 350 DGLLHVFVGKK 360 (366)
Q Consensus 350 dg~i~iw~~~~ 360 (366)
+..|.+|.++.
T Consensus 381 ~~~i~v~~~~~ 391 (450)
T 2vdu_B 381 KNFAKFIEYNL 391 (450)
T ss_dssp CCSEEEEEEET
T ss_pred CcceEEEEEEc
Confidence 55689998754
No 90
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.2e-37 Score=270.66 Aligned_cols=262 Identities=18% Similarity=0.285 Sum_probs=213.1
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC----------CceeEeeecCCCCceeeEEeccCCCceEEE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK----------KVPIFERDEHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
.....|.+.|++++|+|+ ++.+|++++.||.|++|++.. ......+..|.. .|.+++|+|++..++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEE
Confidence 345688999999999995 257999999999999999986 567778888887 89999999998855599
Q ss_pred ecCCCcEEEeeCCCCCC--ce---eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC--CCeeEeeccc
Q 017773 161 GSDDGTMQMWDPRCDGG--KC---VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--DPVLVFDGHR 233 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~--~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~ 233 (366)
|+.||.|++||+..... .. ...+. .|...|.+++|+|++..++++++.|+.|++||+++.. ++...+..|.
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 99999999999983111 11 22333 6778999999999666899999999999999999763 5677788899
Q ss_pred CcEEEEEEc-CCC-EEEEEeCCCcEEEEecCC-CceeeeeecccceeeeEEEEEecCCC-eEEEecCCCeEEEEEeecCc
Q 017773 234 KTVTYIRFL-DVD-TLVTAGTDGCLKLWNVND-SRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 234 ~~v~~~~~~-~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 309 (366)
..|++++|+ ++. +|++++.||.|++||+++ ..++..+..|...+..++|+ |++. +|++++.||.|++||+....
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s--p~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS--PHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC--SSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC--CCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 999999999 565 789999999999999998 57788999999988888877 8885 68999999999999998732
Q ss_pred eEEEE------ecccccccCCCCceeeEEEeeccCCCce-EEEEeCCCCcEEEEEeccc
Q 017773 310 PVWVH------DFEPVTAAGSERGFVSSVCWRRVGEDEC-TLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 310 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~ 361 (366)
..... .........+|...|++++|+| ++. +|++++.||.|+||++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP---NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS---SSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECC---CCCCEEEEEECCCCEEEeEcccc
Confidence 11000 0001112267889999999999 777 8999999999999998753
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-38 Score=274.44 Aligned_cols=272 Identities=18% Similarity=0.254 Sum_probs=216.8
Q ss_pred cccccccceeeeeecCCCceeeecC-CCCccCCCceEEEEECCC----CCEEEEeecCCeEEEEEceecccccceeeeec
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSS-SPNAAVSDSIGVIEFDPS----DSVFATGGIARKIRIYNIKSVLVDHPVVAVVD 85 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~h~~~i~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 85 (366)
.+....+..+..|+...+..+.... .....|...|++++|+|+ +++|++|+.||.|++||+.+++... .
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~--- 110 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---H--- 110 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE---E---
T ss_pred EEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee---e---
Confidence 4444445567777776544332221 111237789999999999 6799999999999999998754432 2
Q ss_pred CceeceeeeecCCceeEEEEec-CCCCcEEEEEcCCCcEEEEeCCCCceeEee---ecCCCCceeeEEeccCCCceEEEe
Q 017773 86 HSKVCDYYICTPAKLSSLKWKP-GTSGRVLGSGDYDGVVMEYDLEKKVPIFER---DEHGGRRVWSVDYSKGDPVLGASG 161 (366)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~ 161 (366)
+.+|..+|.+++|+| + +.+|++++.||.|++||+.+++....+ ..|.. .|.+++|+|+++.+ +++
T Consensus 111 -------~~~~~~~i~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~ 179 (366)
T 3k26_A 111 -------YVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKI-MSC 179 (366)
T ss_dssp -------EESCCSCEEEEEECSSC--TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEE-EEE
T ss_pred -------ecCCCCcEEEEEECCCC--CCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEE-EEe
Confidence 334567899999999 7 999999999999999999999888887 56666 99999999998887 999
Q ss_pred cCCCcEEEeeCCCCCCceeEeec--------------------------CCCCCCCeEEEEEcCCCCcEEEEEecCCeEE
Q 017773 162 SDDGTMQMWDPRCDGGKCVSTVQ--------------------------PSASRSAVCCVEFHPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 162 ~~dg~v~~~d~~~~~~~~~~~~~--------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 215 (366)
+.||.|++||++ .++....+. ...|...|.+++|+ + .++++++.|+.|+
T Consensus 180 ~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~ 254 (366)
T 3k26_A 180 GMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIV 254 (366)
T ss_dssp ETTSCEEEEESC--SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEE
T ss_pred cCCCCEEEEECC--CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEE
Confidence 999999999998 444332221 11377799999999 4 6999999999999
Q ss_pred EEecCCCCC-------------CeeEeecccCcEEEEEEc-C--CCEEEEEeCCCcEEEEecCCCcee----eeeecc--
Q 017773 216 AYDVRKMVD-------------PVLVFDGHRKTVTYIRFL-D--VDTLVTAGTDGCLKLWNVNDSRVI----RTYKGH-- 273 (366)
Q Consensus 216 i~d~~~~~~-------------~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~-- 273 (366)
+||+++... .+..+..|...|.+++|+ + +.+|++++.||.|++||+.++++. ..+..|
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC 334 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence 999987632 256677889999999998 7 899999999999999999987643 477777
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
...+..++|+ |++++|++++.||.|++||+.
T Consensus 335 ~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 335 GAAIRQTSFS--RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSCEEEEEEC--TTSSEEEEEETTSEEEEEEC-
T ss_pred CCceEEEEeC--CCCCeEEEEeCCCEEEEEEec
Confidence 5777777776 999999999999999999985
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.2e-37 Score=268.21 Aligned_cols=243 Identities=13% Similarity=0.182 Sum_probs=196.8
Q ss_pred cCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|...|.+++|+| ++++|++++.||.|++||+.+.. ...+..+ ..|...|.+++|+|+ +.+|++++
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~-------~~~~~~v~~~~~~~~--~~~l~~~~ 182 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----IQVFAKT-------DSWDYWYCCVDVSVS--RQMLATGD 182 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----EEEEECC-------CCSSCCEEEEEEETT--TTEEEEEE
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----eEEEecc-------CCCCCCeEEEEECCC--CCEEEEEC
Confidence 4999999999999 77999999999999999998521 1122222 124467999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC--CceeEeecCCCCCCCeEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG--GKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~ 196 (366)
.|+.|++||+ +++.+..+..|.. .|.+++|+|+++.++++++.|+.|++||++... ...+..+ .|...|.+++
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~ 257 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAY 257 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEE
T ss_pred CCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEE
Confidence 9999999999 5778888888887 999999999999566999999999999998321 4455555 4677999999
Q ss_pred EcC-CCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----------------CcEEEEEEc-CCCEEEEEeCCCcEE
Q 017773 197 FHP-FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----------------KTVTYIRFL-DVDTLVTAGTDGCLK 257 (366)
Q Consensus 197 ~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------~~v~~~~~~-~~~~l~~~~~d~~i~ 257 (366)
|+| ++ .+|++++.|+.|++||+++. +....+..|. ..+..++++ ++++ +++.|+.|+
T Consensus 258 ~s~~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 258 FNPTDS-TKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp ECTTTS-CEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred EcCCCC-CEEEEEcCCCcEEEEECCCC-ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence 999 87 89999999999999999987 4444544332 344456666 5555 788999999
Q ss_pred EEecCCCceeeeeecc--cceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 258 LWNVNDSRVIRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 258 iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+||+.+++++..+.++ ...+..++|+ |++++|++|+ |+.|++||+++
T Consensus 334 iwd~~~~~~~~~l~~~~~~~~~~~~~~s--~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 334 IYDANSGGLVHQLRDPNAAGIISLNKFS--PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEETTTCCEEEEECBTTBCSCCCEEEEC--TTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCCCceeeeecCCCCCceEEEEEEe--cCccEEEEec-CCcEEEEecCC
Confidence 9999999999999874 4555555666 9999999997 89999999864
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=267.65 Aligned_cols=315 Identities=15% Similarity=0.161 Sum_probs=216.1
Q ss_pred cccccceeeeeec-CCCceeeecCCCC----------------------------ccCCCceEEEEECC-CCCEEEEeec
Q 017773 13 ETTNERARCEWDF-NLRTTVSSSSSPN----------------------------AAVSDSIGVIEFDP-SDSVFATGGI 62 (366)
Q Consensus 13 ~~~~~~~~~~w~~-~~~~~~~~~~~~~----------------------------~~h~~~i~~~~~s~-~~~~l~t~~~ 62 (366)
.|...+..+.|++ ++..++.+..++. .+|...|++++|+| ++++|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 3556666666666 6666665554441 13899999999999 7789999999
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCceeEeeecCC
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT-SGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG 141 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 141 (366)
||.|++||+.+.+... .+ .+...+.++.|+|.. ++.++++++.|+.|++||+.+++.+..+..|.
T Consensus 121 d~~i~iwd~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 121 DKTLKVWDTNTLQTAD---VF-----------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp TSEEEEEETTTTEEEE---EE-----------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred CCeEEEeeCCCCccce---ec-----------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 9999999998754432 11 234579999999851 24599999999999999999999999998888
Q ss_pred CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec-------------CCCCCCCeEEEEEcCCCCcEEEEE
Q 017773 142 GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ-------------PSASRSAVCCVEFHPFGSSLVAAG 208 (366)
Q Consensus 142 ~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~l~~~ 208 (366)
. .|.+++|+|+++.++++++.||.|++||++.. ......+. ...|...|.+++|+|++ .+++++
T Consensus 187 ~-~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 263 (408)
T 4a11_B 187 Q-EILAVSWSPRYDYILATASADSRVKLWDVRRA-SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTV 263 (408)
T ss_dssp S-CEEEEEECSSCTTEEEEEETTSCEEEEETTCS-SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEE
T ss_pred C-cEEEEEECCCCCcEEEEEcCCCcEEEEECCCC-CcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEe
Confidence 7 99999999999986699999999999999832 12333331 13577899999999998 899999
Q ss_pred ecCCeEEEEecCCCCCCeeEeecc-----cCcEEEEE-EcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE
Q 017773 209 CADKKAYAYDVRKMVDPVLVFDGH-----RKTVTYIR-FLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 209 ~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
+.||.|++||+++.. .......+ ...+.... ...+..+++++.|+.|++||+.+++++..+.+|...+..++|
T Consensus 264 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 264 GTDNRMRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp ETTSCEEEEETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred cCCCeEEEEECCCCc-cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 999999999999873 33222211 11122222 225667788888999999999999999999999999888887
Q ss_pred EEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 283 SVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 283 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+ |++++|++++.||.|++||+++++++..... .-....+.|. ....+.+.+.|+.+++|+...
T Consensus 343 s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 343 Q--SNFQELYSGSRDCNILAWVPSLYEPVPDDDE-----------TTTKSQLNPA--FEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp E--TTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred c--CCCCEEEEECCCCeEEEEeCCCCCccCCCCc-----------eEeccccccc--cceeecccCccCceeecCCcc
Confidence 7 9999999999999999999999887754421 1122233332 234566778899999998754
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=266.99 Aligned_cols=266 Identities=20% Similarity=0.282 Sum_probs=208.8
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCC---CCEEEEeecCCeEEEEEceecc-cccceeeeecCceecee
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPS---DSVFATGGIARKIRIYNIKSVL-VDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~ 92 (366)
+..+..|+..++....... .+|..+|++++|+|+ +++|++|+.||.|++||+.+.. ... .
T Consensus 43 d~~v~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~ 106 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------------S 106 (357)
T ss_dssp CEEEEEEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------------E
T ss_pred CcEEEEEeCCCCcccceee---ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------------E
Confidence 4445555554443322111 138999999999999 6999999999999999998765 221 2
Q ss_pred eeecCCceeEEEE------ecCCCCcEEEEEcCCCcEEEEeCCCCc-eeEeeecCC---CCceeeEE----eccCCCceE
Q 017773 93 YICTPAKLSSLKW------KPGTSGRVLGSGDYDGVVMEYDLEKKV-PIFERDEHG---GRRVWSVD----YSKGDPVLG 158 (366)
Q Consensus 93 ~~~~~~~v~~~~~------~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~---~~~v~~i~----~~~~~~~l~ 158 (366)
+.+|...|.++.| +|+ +++|++++.||.|++||+.+++ ....+..+. ...+.+++ |+|++..+
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l- 183 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEG--APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV- 183 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-C--CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE-
T ss_pred EEecccceEEEeeccccccCCC--ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE-
Confidence 3456678999966 566 9999999999999999999886 666665443 33788888 77888877
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC---CCCcEEEEEecCCeEEEEecCCCCCCeeEe-----e
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP---FGSSLVAAGCADKKAYAYDVRKMVDPVLVF-----D 230 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~ 230 (366)
++++.||.|++||++ .++..... .+...|.+++|+| ++ .++++++.||.|++||+++. +....+ .
T Consensus 184 ~~~~~d~~i~i~d~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 256 (357)
T 3i2n_A 184 CAGYDNGDIKLFDLR--NMALRWET---NIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEK 256 (357)
T ss_dssp EEEETTSEEEEEETT--TTEEEEEE---ECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEE
T ss_pred EEEccCCeEEEEECc--cCceeeec---CCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCC-CcccceeeeccC
Confidence 999999999999999 66654443 4566999999999 77 79999999999999999876 344433 3
Q ss_pred cccCcEEEEEEc-CCC-EEEEEeCCCcEEEEecCCC-------------------ceeeeeecccceeeeEEEEEecCCC
Q 017773 231 GHRKTVTYIRFL-DVD-TLVTAGTDGCLKLWNVNDS-------------------RVIRTYKGHVNNRNFVGLSVWRHGG 289 (366)
Q Consensus 231 ~~~~~v~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (366)
+|...|++++|+ ++. +|++++.||.|++||++++ +.+..+.+|...+..++|+ |+++
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~ 334 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS--PDKR 334 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC--SSST
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc--CCCC
Confidence 899999999999 666 8999999999999999854 4567788898888888777 9999
Q ss_pred eEE-EecCCCeEEEEEeecCce
Q 017773 290 LLG-CGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 290 ~l~-~~~~dg~i~iwd~~~~~~ 310 (366)
+|+ +++.||.|++||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 998 899999999999987653
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.4e-37 Score=262.70 Aligned_cols=284 Identities=15% Similarity=0.160 Sum_probs=214.7
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE-EEEc
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL-GSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~ 118 (366)
.|.+.|++++|+|||++||+|+.+| ++||++.+..... . . +...+..+++.++ ++.+ ++++
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~----------~~~~~~~~~~~~~--~~~~~~~~~ 78 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--Q----------EMRHLSKVRMLHR--TNYVAFVTG 78 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--E----------ECSCCCEEEECTT--SSEEEEECS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--e----------ecCCeEEEEEcCC--CCEEEEEEC
Confidence 4899999999999999999998765 7899987543221 1 0 1124778888887 6666 5678
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC-ceeEeecCCCCCCCeEEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG-KCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~ 197 (366)
.|++|++||+.+++.+..+..+ . +|.+++++++. + +++ .|+.|++||+. +. +.+..+.. +...+++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~-~-~v~~v~~~~~~--~-~~~-~~~~i~i~d~~--~~~~~~~~~~~-----~~~~~~~ 145 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVD-A-PVKDLFLSREF--I-VVS-YGDVISVFKFG--NPWKRITDDIR-----FGGVCEF 145 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECS-S-CEEEEEECSSE--E-EEE-ETTEEEEEESS--TTCCBSSCCEE-----EEEEEEE
T ss_pred CccEEEEEECCCCcEEEEEECC-C-ceEEEEEcCCE--E-EEE-EcCEEEEEECC--CCceeeEEecc-----CCceEEE
Confidence 8899999999999988888744 3 89999998753 3 333 47899999998 44 44444432 4445666
Q ss_pred cCCCCcEEEE-EecCCeEEEEecCCCC--------------CC-eeEeecccCcEEEEEEc-CCCEEEEEeCCCc-EEEE
Q 017773 198 HPFGSSLVAA-GCADKKAYAYDVRKMV--------------DP-VLVFDGHRKTVTYIRFL-DVDTLVTAGTDGC-LKLW 259 (366)
Q Consensus 198 ~~~~~~~l~~-~~~d~~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~iw 259 (366)
++ . .++++ |+.+|.|++||+++.. .+ +..+.+|..+|++++|+ ++.+|++++.|++ |++|
T Consensus 146 s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 146 SN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp ET-T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred Ec-c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 77 2 34444 6899999999998752 12 67889999999999999 9999999999998 9999
Q ss_pred ecCCCceeeeee-c-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccc---------------cccc
Q 017773 260 NVNDSRVIRTYK-G-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEP---------------VTAA 322 (366)
Q Consensus 260 d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~ 322 (366)
|+++++++.++. + |...+..++|+ |++++|++++.|+.|++||++.+.......+.. ....
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s--~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWS--TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEEC--TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEEC--CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence 999999999998 5 88888888877 999999999999999999997654221111110 0001
Q ss_pred CCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 323 GSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 323 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
..+......++|+| ++++|++++.||.+++|++...
T Consensus 302 ~~~~~~~~~~a~~~---d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 302 VDKHVRGCKIAWIS---ESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCTTCCCCEEEESS---SSEEEEEETTTTEEEEEEEEEE
T ss_pred cCCCCCceEEEEeC---CCCEEEEEeCCCeEEEEEEEcC
Confidence 11223346799999 8999999999999999998763
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=262.30 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=228.3
Q ss_pred cccccccceeeeeecCCCceeeecCCCCc---------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecc
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNA---------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVL 75 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 75 (366)
+..|...+..+.|++++..++.+..++.+ +|...|++++|+|++++|++++.||.|++||+.+++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34556666677777776666666655532 289999999999999999999999999999998765
Q ss_pred cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCce-----------eEeeec
Q 017773 76 VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-----GVVMEYDLEKKVP-----------IFERDE 139 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~-----------~~~~~~ 139 (366)
... .+. +...|.+++|+|+ +.++++++.+ +.|.+||+..+.. ...+..
T Consensus 108 ~~~---~~~-----------~~~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 108 CVA---TWK-----------SPVPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp EEE---EEE-----------CSSCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred EEE---Eee-----------cCCCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 433 211 3467999999999 9999999988 9999999976532 222222
Q ss_pred CCC-CceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEE
Q 017773 140 HGG-RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG-GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAY 217 (366)
Q Consensus 140 ~~~-~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~ 217 (366)
+.. ..+.+++|+|+++.+ ++++.||.|++||++ . .+....+. .|...|.+++|+|++ .+|++++.|+.|++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYI-IAGHKDGKISKYDVS--NNYEYVDSID--LHEKSISDMQFSPDL-TYFITSSRDTNSFLV 245 (369)
T ss_dssp CTTCCCEEEEEECGGGCEE-EEEETTSEEEEEETT--TTTEEEEEEE--CCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CcCccceeEEEEcCCCCEE-EEEcCCCEEEEEECC--CCcEeEEEEe--cCCCceeEEEECCCC-CEEEEecCCceEEEE
Confidence 221 279999999999887 899999999999998 5 56666666 566799999999998 899999999999999
Q ss_pred ecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC--------------cEEEEecCCCceeeeeecccceeeeEEE
Q 017773 218 DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG--------------CLKLWNVNDSRVIRTYKGHVNNRNFVGL 282 (366)
Q Consensus 218 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
|+++. +.+..+. +...+..++|+ ++.++++++.++ .+++||..+++++..+.+|...+..++|
T Consensus 246 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 323 (369)
T 3zwl_B 246 DVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI 323 (369)
T ss_dssp ETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ECCCC-ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence 99987 5666665 78899999999 999999999888 8999999999999999999999888887
Q ss_pred EEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 283 SVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 283 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
+ |++++|++++.||.|++|+++++....
T Consensus 324 s--~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 324 S--PQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp C--TTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred C--CCCCEEEEEcCCCeEEEEECccccchh
Confidence 7 999999999999999999998765443
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.2e-37 Score=285.67 Aligned_cols=270 Identities=15% Similarity=0.226 Sum_probs=207.6
Q ss_pred cccccceeeeeecCCCceeee-cCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceece
Q 017773 13 ETTNERARCEWDFNLRTTVSS-SSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
....+..+..|+......... ......+|...|++++|+|++++|++|+.||.|+|||+.++....
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~------------- 466 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR------------- 466 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-------------
Confidence 334456666666544221100 001123499999999999999999999999999999998754322
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEee---ecCCCCceeeEEeccCCC-ceEEEecCCCcE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFER---DEHGGRRVWSVDYSKGDP-VLGASGSDDGTM 167 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~-~l~~~~~~dg~v 167 (366)
.+.+|...|.+++|+|+ +++|++|+.|++|++||.......... ..|.. .|.+++|+|++. .++++++.|+.|
T Consensus 467 ~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v 543 (694)
T 3dm0_A 467 RFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTV 543 (694)
T ss_dssp EEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCE
T ss_pred EEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeE
Confidence 24456778999999999 999999999999999998655333222 24555 899999999863 345999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
++||++ ..+....+. +|...|.+++|+|++ .+|++|+.||.|++||++++ +.+..+. +...+.+++|+ ++.+
T Consensus 544 ~vwd~~--~~~~~~~~~--~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 544 KVWNLS--NCKLRSTLA--GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEG-KKLYSLE-ANSVIHALCFSPNRYW 616 (694)
T ss_dssp EEEETT--TCCEEEEEC--CCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTT-EEEECCB-CSSCEEEEEECSSSSE
T ss_pred EEEECC--CCcEEEEEc--CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-ceEEEec-CCCcEEEEEEcCCCcE
Confidence 999999 677777776 678899999999998 89999999999999999987 5555554 45689999999 6555
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecccc-----------------eeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 247 LVTAGTDGCLKLWNVNDSRVIRTYKGHVN-----------------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+++ +.++.|++||+++++.+..+..+.. .+.+.+++|+|+|++|++|+.||.|++|++.
T Consensus 617 l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 554 5577799999999988877653321 1224455666999999999999999999985
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-37 Score=271.71 Aligned_cols=283 Identities=13% Similarity=0.102 Sum_probs=221.4
Q ss_pred cccccceeeeeec-CCCceeeecCCCCc--------------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEc
Q 017773 13 ETTNERARCEWDF-NLRTTVSSSSSPNA--------------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNI 71 (366)
Q Consensus 13 ~~~~~~~~~~w~~-~~~~~~~~~~~~~~--------------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~ 71 (366)
.|.+.+..+.|++ ++..++++..++.+ .|...|++++|+|++++|++|+.||.|++||+
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 3456777778888 77777776665422 38999999999999999999999999999999
Q ss_pred eecccccceeeeecCceeceeeee--cCCceeEEEE--ecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeec--CCCCce
Q 017773 72 KSVLVDHPVVAVVDHSKVCDYYIC--TPAKLSSLKW--KPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE--HGGRRV 145 (366)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~v 145 (366)
..............+......+.. +...+.++.+ +++ +.+|++++.|+.|++||+.+++.+..+.. |.. .|
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v 217 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE--KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AV 217 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS--CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CE
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ce
Confidence 632111111122222111111111 5567888884 466 99999999999999999999999999988 566 99
Q ss_pred eeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC----CCCcEEEEEecCCeEEEEecCC
Q 017773 146 WSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP----FGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 146 ~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
.+++|+|++..+ ++|+.||.|++||++ .++++..+.. .+...|.+++|+| ++ .++++|+.||.|++||+++
T Consensus 218 ~~~~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 218 SSICIDEECCVL-ILGTTRGIIDIWDIR--FNVLIRSWSF-GDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEEEECTTSCEE-EEEETTSCEEEEETT--TTEEEEEEBC-TTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTT
T ss_pred EEEEECCCCCEE-EEEcCCCeEEEEEcC--CccEEEEEec-CCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCC
Confidence 999999998877 999999999999999 7788777754 3556899997665 45 7999999999999999987
Q ss_pred CCCCeeEeec--------------------------ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec---
Q 017773 222 MVDPVLVFDG--------------------------HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG--- 272 (366)
Q Consensus 222 ~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--- 272 (366)
+ +.+..+.+ |...|++++|+++.+|++++.|+.|++||+++++.+..+.+
T Consensus 293 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 371 (437)
T 3gre_A 293 G-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSR 371 (437)
T ss_dssp T-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred C-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence 6 44444432 56678899999778999999999999999999988877765
Q ss_pred ----------------------------------ccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 273 ----------------------------------HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 273 ----------------------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
|...|.++++...+++.+|++|+.||.|+||+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 372 FSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 77788888888433488999999999999994
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=274.59 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=199.1
Q ss_pred ecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC--ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC
Q 017773 95 CTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK--VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP 172 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~ 172 (366)
.+.++|++++|+|+ +++|++|+.|+.|++||+.++ +....+..|.. .|.+++|+|+++++ ++++.|+.|++||+
T Consensus 9 ~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l-~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQ--RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWAPKSNRI-VTCSQDRNAYVYEK 84 (377)
T ss_dssp ECSSCCSCCEECSS--SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-CEEEEEECTTTCCE-EEEETTSSEEEC--
T ss_pred cCCCcEEEEEECCC--CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-eEEEEEEeCCCCEE-EEEeCCCeEEEEEc
Confidence 34568999999999 999999999999999999988 67778888887 99999999999887 99999999999999
Q ss_pred CCCCCc---eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC--CeeEeec-ccCcEEEEEEc-CCC
Q 017773 173 RCDGGK---CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD--PVLVFDG-HRKTVTYIRFL-DVD 245 (366)
Q Consensus 173 ~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~-~~~~v~~~~~~-~~~ 245 (366)
. .++ ....+ ..|...|.+++|+|++ .+|++++.|+.|++||+++... ....+.. |...|.+++|+ +++
T Consensus 85 ~--~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 85 R--PDGTWKQTLVL--LRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ------CCCCEEEC--CCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred C--CCCceeeeeEe--cccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 8 444 33333 3678899999999998 7999999999999999998732 4667777 99999999999 889
Q ss_pred EEEEEeCCCcEEEEecC------------------CCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 246 TLVTAGTDGCLKLWNVN------------------DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+|++++.|+.|++||++ .++++..+ +|...+..++|+ |++++|++++.||.|++||+.+
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS--PSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC--TTSSCEEEEETTTEEC-CEECS
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC--CCCCEEEEEeCCCcEEEEECCC
Confidence 99999999999999985 34566667 888888888777 9999999999999999999998
Q ss_pred CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 308 GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++..... ...+.+|...|.+++|+| ++++|++++.|+.+ +|+..
T Consensus 237 ~~~~~~~----~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRA----LITVKLSQLPLRSLLWAN---ESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTSCEEE----CCCEECSSSCEEEEEEEE---TTEEEEEESSSSEE-EECCC
T ss_pred CCCccee----eEeecCCCCceEEEEEcC---CCCEEEEEcCCcEE-EEEeC
Confidence 8762111 112256889999999999 88899999877766 67654
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=254.26 Aligned_cols=244 Identities=17% Similarity=0.270 Sum_probs=206.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
|...|.+++|+|++++|++|+.||.|++|++........... +.+|...|.+++|. +.++++++.|
T Consensus 58 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~----~~~l~~~~~d 123 (313)
T 3odt_A 58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT----------LIGHQGNVCSLSFQ----DGVVISGSWD 123 (313)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE----------ECCCSSCEEEEEEE----TTEEEEEETT
T ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc----------hhhcccCEEEEEec----CCEEEEEeCC
Confidence 899999999999999999999999999999987544332222 34556789999993 6799999999
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEecc-CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSK-GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|++|| .++....+..|.. ++.+++|.| ++..+ ++++.||.|++||.. +....+.. .+...+.+++|+|
T Consensus 124 ~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l-~~~~~d~~i~i~d~~----~~~~~~~~-~~~~~i~~~~~~~ 194 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKF-LTASADKTIKLWQND----KVIKTFSG-IHNDVVRHLAVVD 194 (313)
T ss_dssp SEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEE-EEEETTSCEEEEETT----EEEEEECS-SCSSCEEEEEEEE
T ss_pred CCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEE-EEEECCCCEEEEecC----ceEEEEec-cCcccEEEEEEcC
Confidence 9999999 6677778888877 999999998 55555 999999999999943 45555542 2667999999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (366)
++ . +++++.|+.|++||++++ +.+..+..|...|++++|+ ++ .|++++.||.|++||+++++++..+..|...+.
T Consensus 195 ~~-~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 270 (313)
T 3odt_A 195 DG-H-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIW 270 (313)
T ss_dssp TT-E-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEE
T ss_pred CC-e-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEE
Confidence 98 5 889999999999999987 7888899999999999999 55 699999999999999999999999999988888
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.++++ |+++ +++++.||.|++||+++++.....
T Consensus 271 ~~~~~--~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 271 SVDCM--SNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEC--TTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEc--cCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 87777 9998 567889999999999988766544
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-37 Score=273.46 Aligned_cols=251 Identities=15% Similarity=0.204 Sum_probs=190.1
Q ss_pred cCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 118 (366)
+|.+.|++|+|+| ++++|++|+.||+|++||+++.... .+..+. .+...+.+++|+|+ +.+|++|+
T Consensus 162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~--~~~l~~g~ 228 (435)
T 4e54_B 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR----VFASSD-------TINIWFCSLDVSAS--SRMVVTGD 228 (435)
T ss_dssp SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE----EEECCS-------SCSCCCCCEEEETT--TTEEEEEC
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee----EEeccC-------CCCccEEEEEECCC--CCEEEEEe
Confidence 4999999999998 6889999999999999998754221 111111 12345889999999 99999999
Q ss_pred CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee-cCCCCCCCeEEEEE
Q 017773 119 YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV-QPSASRSAVCCVEF 197 (366)
Q Consensus 119 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~ 197 (366)
.||.|++||+.. +.+..+..|.. .|.+++|+|+++.++++++.|+.|++||++ ..+....+ ...+|...|.+++|
T Consensus 229 ~dg~i~~wd~~~-~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 229 NVGNVILLNMDG-KELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACF 304 (435)
T ss_dssp SSSBEEEEESSS-CBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETT--TCCSSSCCSBCCBCSSCEEECCB
T ss_pred CCCcEeeeccCc-ceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEecc--cccccceEEEeeeccccccceeE
Confidence 999999999864 56677888887 999999999999887999999999999998 44433322 23467889999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC------cEEEEEEc-CCCEEEEEe------------CCCcEEE
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK------TVTYIRFL-DVDTLVTAG------------TDGCLKL 258 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~-~~~~l~~~~------------~d~~i~i 258 (366)
+|+| .+|++++.||.|++||+++. .....+..|.. .+....|+ ++..+++++ .++.|++
T Consensus 305 spdg-~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i 382 (435)
T 4e54_B 305 SPDG-ARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV 382 (435)
T ss_dssp CTTS-SEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred CCCC-CeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence 9998 89999999999999999987 45554444432 12233454 444444443 3467999
Q ss_pred EecCCCceeeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 259 WNVNDSRVIRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 259 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
||..+++.+..+. +|...+..+. .|+|+|.+|++|+ |+.|+||+++++++.
T Consensus 383 wd~~~g~~~~~l~~~~~~~v~s~~-~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 383 FDGNSGKMMCQLYDPESSGISSLN-EFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECSSSCCEEEEECCSSCCCCCCEE-EECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EECCCCcEEEEEeCCCCCcEEEEE-EECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 9999999888875 5666666552 2449999999986 789999999988754
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.7e-37 Score=263.06 Aligned_cols=252 Identities=14% Similarity=0.156 Sum_probs=196.0
Q ss_pred cCCCceEEEEECCCCCEEEEe-----------ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC
Q 017773 40 AVSDSIGVIEFDPSDSVFATG-----------GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG 108 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~-----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 108 (366)
+|.+.|.++++++ +.+++| +.|+.+|+|++............... .....+...+.+++|+|+
T Consensus 71 ~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 71 DNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF----DASTNADDYTKLVYISRE 144 (365)
T ss_dssp TTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS----SCCCCTTCCEEEEEECTT
T ss_pred CCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece----eecCCcccCEEEEEEcCC
Confidence 3677788887654 455554 46788999998765432211111110 112233456899999999
Q ss_pred CCCcEEEE--EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC
Q 017773 109 TSGRVLGS--GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS 186 (366)
Q Consensus 109 ~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 186 (366)
|+++++ ++.|++|++||+++++.+..+. |.. .|.+++|+|+++++ ++++.+ .+.+|+.. +++........
T Consensus 145 --g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~-~V~~v~fspdg~~l-~s~s~~-~~~~~~~~--~~~~~~~~~~~ 216 (365)
T 4h5i_A 145 --GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRG-EVKDLHFSTDGKVV-AYITGS-SLEVISTV--TGSCIARKTDF 216 (365)
T ss_dssp --SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSS-CCCEEEECTTSSEE-EEECSS-CEEEEETT--TCCEEEEECCC
T ss_pred --CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCC-ceEEEEEccCCceE-Eeccce-eEEEEEec--cCcceeeeecC
Confidence 988764 4578999999999999888876 444 89999999999987 888755 56666666 56666555555
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecCC----eEEEEecCCCCC---CeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEE
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCADK----KAYAYDVRKMVD---PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i 258 (366)
.|...+.+++|+|++ ..+++++.|+ .+++||+..... ....+.+|..+|++++|+ ++++|++|+.|++|+|
T Consensus 217 ~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 217 DKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 777899999999998 7888888877 688899876522 234567899999999999 9999999999999999
Q ss_pred EecCCCceeeee-ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 259 WNVNDSRVIRTY-KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 259 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
||+++++++.++ .+|...|+.++|+ |||++|++|+.|++|+|||+...
T Consensus 296 wd~~~~~~~~~~~~gH~~~V~~v~fS--pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSFAITEVTIS--PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTTTEEEEEETTSSSSCEEEEEEC--TTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCcEEEEecCcccCCEEEEEEC--CCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999885 7899999888887 99999999999999999999643
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-36 Score=267.56 Aligned_cols=260 Identities=19% Similarity=0.279 Sum_probs=212.5
Q ss_pred ccCCCceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc-EEEE
Q 017773 39 AAVSDSIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR-VLGS 116 (366)
Q Consensus 39 ~~h~~~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~ 116 (366)
..|.+.|++++|+|+ +.+||+++.||.|++|++........ ..+.......+.+|...|.+++|+|+ +. +|++
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s 199 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---PSGECQPDLRLRGHQKEGYGLSWNPN--LNGYLLS 199 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---TTCCCCCSEEEECCSSCCCCEEECTT--STTEEEE
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---ccccCCCcEEecCCCCCeEEEEeCCC--CCCeEEE
Confidence 349999999999997 68999999999999999986322110 00111222345567789999999998 77 9999
Q ss_pred EcCCCcEEEEeCCCCce-------eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-CceeEeecCCCC
Q 017773 117 GDYDGVVMEYDLEKKVP-------IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG-GKCVSTVQPSAS 188 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~~ 188 (366)
|+.||.|++|++..+.. ...+..|.. .|.+++|+|++..++++++.||.|++||++... .+....+. .|
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 276 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AH 276 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCC-CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--cC
Confidence 99999999999987422 345556766 899999999777777999999999999999321 14555554 57
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CC-CEEEEEeCCCcEEEEecCC---
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV-DTLVTAGTDGCLKLWNVND--- 263 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~iwd~~~--- 263 (366)
...|++++|+|++..++++|+.||.|++||+++...++..+..|...|.+++|+ ++ .+|++++.|+.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 779999999999866899999999999999998667888999999999999999 55 4799999999999999987
Q ss_pred -----------CceeeeeecccceeeeEEEEEecCCC-eEEEecCCCeEEEEEeecC
Q 017773 264 -----------SRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 264 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 308 (366)
.+.+..+.+|...+..++|+ |++. +|++++.||.|++|++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWN--PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEEC--SSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEEC--CCCCCEEEEEECCCCEEEeEcccc
Confidence 36677778888888877777 9998 8999999999999999754
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=252.01 Aligned_cols=274 Identities=15% Similarity=0.261 Sum_probs=217.9
Q ss_pred cccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.++...+..+..|+.+++.++.... ..+|...|++++|+|++++||+|+.||.|++|++.+++... .+.
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---~~~------ 106 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMT------ 106 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEE--CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEE------
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEE--ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---Eec------
Confidence 4555667889999999887665442 12488999999999999999999999999999998865433 333
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK-VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
+|...+.++.+. +..+++++.++.+++|+.... ..+..+..|.. .+..+.+.++++.+ ++++.|+.|++
T Consensus 107 ----~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~s~~~d~~i~i 176 (318)
T 4ggc_A 107 ----SHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHL-ASGGNDNLVNV 176 (318)
T ss_dssp ----CCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEE-EEEETTSCEEE
T ss_pred ----CccceEEEeecC----CCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEE-EEEecCcceeE
Confidence 344566665554 679999999999999999876 44566777776 89999999999887 99999999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE--EEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV--AAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
||++..............+...|.+++++|.+..++ ++++.++.|++||.+.. .......+...+..+.|+ ++..
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 254 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--CEEEEEECSSCEEEEEEETTTTE
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--cccccccceeeeeeeeecccccc
Confidence 999832222222222235667999999999886665 45667899999999886 333444577889999998 7777
Q ss_pred EEEEe--CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 247 LVTAG--TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 247 l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
+++++ .|+.|++||+++++++.++.+|...|.+++|+ |++++|++|+.||+|+|||+...+
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s--pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCCCC
Confidence 76554 79999999999999999999999999888877 999999999999999999997654
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=270.58 Aligned_cols=294 Identities=12% Similarity=0.107 Sum_probs=209.8
Q ss_pred cccccceeeeeecCCCceeeecCCCCc----------cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceee
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNA----------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVA 82 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~----------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 82 (366)
+....+..+.|++++..++++..+..+ +|...|.+++|+|+| .++.+.+|+.+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~----- 80 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL----- 80 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-----
Confidence 334555556666666666655555443 466666666666665 2333333332211110
Q ss_pred eecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCC----CceeeEEeccCCCceE
Q 017773 83 VVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGG----RRVWSVDYSKGDPVLG 158 (366)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~ 158 (366)
...|...|.+++|+|+ |.+||+++.||.|++||.+. .+..+. |+. ..|.+++|+|+|+.|
T Consensus 81 ----------~~~~~~~V~~vawSPd--G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~L- 144 (588)
T 2j04_A 81 ----------NSQPVCYPRVCKPSPI--DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSI- 144 (588)
T ss_dssp ----------TTSCSCCEEEEEECSS--SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCE-
T ss_pred ----------ecCCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEE-
Confidence 0123467999999999 99999999999999999654 555555 543 249999999999998
Q ss_pred EEecCCCcEEEeeCCCCCCc-------eeEeec--CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC--Cee
Q 017773 159 ASGSDDGTMQMWDPRCDGGK-------CVSTVQ--PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD--PVL 227 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~-------~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~ 227 (366)
++|+.||+|++||+. .+. .+..+. ..+|...|.+++|+|+| +++++.|+.|++||+.+... ...
T Consensus 145 Asgs~DGtVkIWd~~--~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 145 VVGNEDGELQFFSIR--KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp EEEETTSEEEEEECC--CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred EEEcCCCEEEEEECC--CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccccee
Confidence 999999999999998 443 244542 23577899999999986 77888999999999988632 234
Q ss_pred Ee-ecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEE--EEecCCCeEEEecCCCeEEEEE
Q 017773 228 VF-DGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGL--SVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 228 ~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd 304 (366)
.+ .+|...|.+++|+ ++.+++++ +++|++||+.+++......+|...+..+++ + |++..++++++||. ++|.
T Consensus 220 tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s--~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 220 MIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE--KESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC--SSCEEEEECSSCEE-EEEE
T ss_pred eecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC--CCCCEEEEEcCCCC-EEEe
Confidence 55 4788999999999 78999887 699999999988774444479999988888 7 99999999999999 9999
Q ss_pred eec------CceEE-------EEe--cccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 305 VRW------GEPVW-------VHD--FEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 305 ~~~------~~~~~-------~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
.+. +..+. ... ....... .+...|.+++|+| ||+.+|+++
T Consensus 295 ~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~-~~~~~I~~va~SP---dG~~lA~~~ 349 (588)
T 2j04_A 295 EDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY-ETTLVIHGISLSP---DGYSIAIVY 349 (588)
T ss_dssp SSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS-CCEEEEEEEEECT---TSSEEEEEE
T ss_pred eccEEECCCceEEEEcCCEEEEEECCCCceeee-ccceEEEEEEECC---CCCEEEEEE
Confidence 742 10000 000 0011111 2355699999999 888999886
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=266.32 Aligned_cols=263 Identities=14% Similarity=0.125 Sum_probs=206.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-...|.+++|+|||+++|+++.|++|+ |.... . . +.+|+..|.+++|+|+ | .+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~---~----------l~gh~~~v~~V~FsPd--g-------~~ 66 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---K---D----------INCNSKNLFHVKEFPL--E-------FE 66 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---S---C----------CSSBGGGTEEEEEECC--C-------CC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---c---e----------ecCCCccEEEEEECCC--C-------Cc
Confidence 367899999999999999999999999 53322 1 1 1346678999999998 6 46
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC---CCCeEEEEE
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS---RSAVCCVEF 197 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~---~~~i~~~~~ 197 (366)
+.+.+|+.+... ...+ .+.. .|.+++|+|+|..+ ++++.||.|++||.. . .+..+. +.. ...+.+++|
T Consensus 67 ~~~~~~~~~~~~-~~~~-~~~~-~V~~vawSPdG~~L-As~s~dg~V~iwd~~--~--~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 67 NKLDFELAQQNG-LLNS-QPVC-YPRVCKPSPIDDWM-AVLSNNGNVSVFKDN--K--MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp CTTTTSCCCSSC-SSTT-SCSC-CEEEEEECSSSSCE-EEEETTSCEEEEETT--E--EEEECC-CSSCSTTTCEEEEEE
T ss_pred ceEEEEeCCCce-Eeec-CCCC-cEEEEEECCCCCEE-EEEeCCCcEEEEeCC--c--eeeecc-CCCccccccEEEEEE
Confidence 666666543222 2222 3333 89999999999998 999999999999965 2 555444 111 225999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCC------CeeEe----ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVD------PVLVF----DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV 266 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~----~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 266 (366)
+|+| ++|++|+.||+|++||+.++.. .+..+ .+|...|.+++|+ ++ +++++.|+.|++||+..++.
T Consensus 138 SPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 138 NPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp CSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred cCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 9998 8999999999999999988621 24555 5677899999999 55 88999999999999988773
Q ss_pred ---eeeee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEe--eccCCC
Q 017773 267 ---IRTYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCW--RRVGED 340 (366)
Q Consensus 267 ---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 340 (366)
..++. +|...|..++|+ ++.|++++ ++.|++||+.+++..... .+|.+.|.+++| +| +
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs----g~~LASa~-~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~---d 278 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV----DYKVVLTC-PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEK---E 278 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE----TTEEEEEC-SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCS---S
T ss_pred ccceeeecccccCcEEEEEEE----CCEEEEEe-CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCC---C
Confidence 34564 777788888876 68899887 699999999987764222 358999999999 88 9
Q ss_pred ceEEEEeCCCCcEEEEEec
Q 017773 341 ECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 341 ~~~l~s~~~dg~i~iw~~~ 359 (366)
+..|+++++||. ++|..+
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999874
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.4e-36 Score=260.58 Aligned_cols=280 Identities=15% Similarity=0.248 Sum_probs=219.6
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceecee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDY 92 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 92 (366)
...+..+..|+.+.............+|.+.|++++|+| ++++|++|+.||.|++|++.+...... .......
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~------~~~~~~~ 126 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP------LREPVIT 126 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC------BCSCSEE
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc------cCCceEE
Confidence 355677788887554322112222345999999999999 899999999999999999987643220 0112234
Q ss_pred eeecCCceeEEEEecCCCC-cEEEEEcCCCcEEEEeCCCCceeEee--ecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 93 YICTPAKLSSLKWKPGTSG-RVLGSGDYDGVVMEYDLEKKVPIFER--DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
+.+|...|.+++|+|+ + .+|++++.|+.|++||+.+++.+..+ ..|.. .|.+++|+|++..+ ++++.||.|++
T Consensus 127 ~~~h~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~d~~i~i 202 (402)
T 2aq5_A 127 LEGHTKRVGIVAWHPT--AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALI-CTSCRDKRVRV 202 (402)
T ss_dssp EECCSSCEEEEEECSS--BTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCE-EEEETTSEEEE
T ss_pred ecCCCCeEEEEEECcC--CCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEE-EEEecCCcEEE
Confidence 5567789999999998 7 69999999999999999999998888 66776 99999999998887 99999999999
Q ss_pred eeCCCCCCceeEeecCCCCCC-CeEEEEEcCCCCcEEEEE---ecCCeEEEEecCCCCCCeeEee-cccCcEEEEEEc-C
Q 017773 170 WDPRCDGGKCVSTVQPSASRS-AVCCVEFHPFGSSLVAAG---CADKKAYAYDVRKMVDPVLVFD-GHRKTVTYIRFL-D 243 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~-~ 243 (366)
||++ +++.+..+.. .|.. .+.++.|+|++ .++++| +.|+.|++||+++...+..... .|...+.+++|+ +
T Consensus 203 wd~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 203 IEPR--KGTVVAEKDR-PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp EETT--TTEEEEEEEC-SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred EeCC--CCceeeeecc-CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 9999 7777777622 3433 48999999998 899998 7999999999998754444443 577889999999 8
Q ss_pred CCEEEE-EeCCCcEEEEecCCCce-eeeeecc--cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 244 VDTLVT-AGTDGCLKLWNVNDSRV-IRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 244 ~~~l~~-~~~d~~i~iwd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
+++|++ ++.|+.|++||+.++++ +..+..+ ...+..++|+ |++.++++ .++.+++|++.+++..
T Consensus 279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--p~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--PKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC--CGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe--ccccccee--cceeEEEEEcCCCcEE
Confidence 888864 55799999999999874 5555544 4677777776 99998875 4569999999987543
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-36 Score=265.18 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=195.3
Q ss_pred CCceEEEEEC---CCCCEEEEeecCCeEEEEEceecccccce------eeeecCce----------eceeeeecCCceeE
Q 017773 42 SDSIGVIEFD---PSDSVFATGGIARKIRIYNIKSVLVDHPV------VAVVDHSK----------VCDYYICTPAKLSS 102 (366)
Q Consensus 42 ~~~i~~~~~s---~~~~~l~t~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~----------~~~~~~~~~~~v~~ 102 (366)
+....++.|. |++..+++++.++.|++|+.......... .....+.. .......|...+..
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 4456677774 34433444455888999987653322100 00000000 00011122223333
Q ss_pred EEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-----EeeecCCCCceeeEEecc--------CCCceEEEecCCCcEEE
Q 017773 103 LKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI-----FERDEHGGRRVWSVDYSK--------GDPVLGASGSDDGTMQM 169 (366)
Q Consensus 103 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~v~~i~~~~--------~~~~l~~~~~~dg~v~~ 169 (366)
..+.++ +.+|++++.|++|++||...+... ..+.+|.+ .|.+++|+| +++.| ++++.|++|+|
T Consensus 95 ~~~~~~--~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~l-as~s~D~tv~~ 170 (393)
T 4gq1_A 95 NSSPVY--SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVI-ASVGDDCTLII 170 (393)
T ss_dssp --CCEE--EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEE-EEEETTSEEEE
T ss_pred eecCCC--CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEE-EEEECCCeEEE
Confidence 334444 678999999999999999887543 23567877 999999998 45555 99999999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee----------------------
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL---------------------- 227 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------------- 227 (366)
||++ ++.+...+. .|...+.+++|+|++..+|++|+.|+.|++||++++.....
T Consensus 171 Wd~~--~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 171 WRLT--DEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEE--TTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EECC--CCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9998 566555554 46679999999999867899999999999999987622111
Q ss_pred --EeecccCcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeE------------------EEEEe
Q 017773 228 --VFDGHRKTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV------------------GLSVW 285 (366)
Q Consensus 228 --~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 285 (366)
...+|...+.++.|+ ++..+++++.|+++++||+..++....+..|...+..+ .+.+.
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 123577788899986 88999999999999999999887666665554433222 22222
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+++.++++|+.||.|++||+.+++..... .+|..+|++++|+| ||++||+++.|| +.+|++.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------~~~~~~V~svafsp---dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIP--------IQLGMPIVDFCWHQ---DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEE--------EECSSCEEEEEECT---TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEe--------cCCCCcEEEEEEcC---CCCEEEEEeCCC-eEEEEEeC
Confidence 35567888999999999999998877654 34778999999999 999999998776 66777754
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=270.25 Aligned_cols=245 Identities=14% Similarity=0.245 Sum_probs=198.6
Q ss_pred cCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-----------eeEeeecCC------------CCceeeEEecc
Q 017773 96 TPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-----------PIFERDEHG------------GRRVWSVDYSK 152 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~~v~~i~~~~ 152 (366)
+.+.|++++|+|+ +++|++|+.||.|++||+.+++ ....+.+|. . .|.+++|+|
T Consensus 27 ~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~~~ 103 (447)
T 3dw8_B 27 EADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRWLP 103 (447)
T ss_dssp GGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEECC
T ss_pred ccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccC-ceEEEEEcC
Confidence 4568999999999 9999999999999999998876 467788886 5 899999999
Q ss_pred CC--CceEEEecCCCcEEEeeCCCCCCceeE--------------------------------------eecCCCCCCCe
Q 017773 153 GD--PVLGASGSDDGTMQMWDPRCDGGKCVS--------------------------------------TVQPSASRSAV 192 (366)
Q Consensus 153 ~~--~~l~~~~~~dg~v~~~d~~~~~~~~~~--------------------------------------~~~~~~~~~~i 192 (366)
++ ..+ ++++.|+.|++||+. ...... .....+|...|
T Consensus 104 ~~~~~~l-~s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 104 QKNAAQF-LLSTNDKTIKLWKIS--ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CCSSSEE-EEEECSSCEEEEEEE--EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCCcceE-EEeCCCCeEEEEecc--cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 97 455 899999999999987 322210 01124688899
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-------EeecccCcEEEEEEc-CC-CEEEEEeCCCcEEEEecCC
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-------VFDGHRKTVTYIRFL-DV-DTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~iwd~~~ 263 (366)
.+++|+|++ .+|++| .|+.|++||+++..+... .+.+|...|++++|+ ++ .+|++++.||.|++||+++
T Consensus 181 ~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 181 NSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 999999998 788888 899999999985433443 356799999999999 76 8999999999999999999
Q ss_pred Cce----eeeeecccc------------eeeeEEEEEecCCCeEEEecCCCeEEEEEeec-CceEEEEecccccccCCCC
Q 017773 264 SRV----IRTYKGHVN------------NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW-GEPVWVHDFEPVTAAGSER 326 (366)
Q Consensus 264 ~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 326 (366)
++. +..+..|.. .+..++|+ |++++|++++. +.|++||+++ ++++..+. +|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--------~~~ 327 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS--HSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--------VHE 327 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC--TTSSEEEEEES-SEEEEEETTCCSSCSCCEE--------SCG
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEEC--CCCCEEEEeeC-CeEEEEeCCCCccccceee--------ccc
Confidence 886 788888775 67777776 99999999999 9999999987 77665553 232
Q ss_pred c---------------eeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 327 G---------------FVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 327 ~---------------~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
. .+..++|+| ++++|++|+.||.|++||++++.
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~---~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNG---SDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECT---TSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccccccccccceEEEECC---CCCEEEEeccCCEEEEEEcCCCc
Confidence 2 133499999 88899999999999999998754
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=256.43 Aligned_cols=273 Identities=11% Similarity=0.037 Sum_probs=206.3
Q ss_pred EECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 017773 49 EFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDL 128 (366)
Q Consensus 49 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 128 (366)
.+.+++++|++|+.||.|++||+.+++... .+. ...|.++.|+|. +++++.|++|++|+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~---~~~------------~~~v~~~~~~~~-----~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT---TIT------------TPNPRTGGEHPA-----IISRGPCNRLLLLYP 102 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE---EEE------------EECCCTTCCCCS-----EEEECSTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE---EEe------------cCCceeeeeCCc-----eEEecCCCeEEEEEc
Confidence 455678899999999999999998876544 222 135778888874 999999999999976
Q ss_pred C---------CCceeEeeecCCCCceeeEEecc--CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 129 E---------KKVPIFERDEHGGRRVWSVDYSK--GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 129 ~---------~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
. +++.+..+...+..+|.+++|+| +++++ ++++.||.|++||++ +++....... .+...+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~~~~~~~~~-~~~~~i~~~~~ 178 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF-IWADNRGTIGFQSYE--DDSQYIVHSA-KSDVEYSSGVL 178 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEE-EEEETTCCEEEEESS--SSCEEEEECC-CSSCCCCEEEE
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEE-EEEeCCCcEEEEECC--CCcEEEEEec-CCCCceEEEEE
Confidence 5 44444455433333899999999 88877 999999999999999 6666555432 34557999999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec---
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG--- 272 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--- 272 (366)
+|++ .++++|+.||.|++||++++......+.. |..+|++++|+ ++.+|++++ |+.|++||+++++.+..+..
T Consensus 179 ~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 3lrv_A 179 HKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI 256 (343)
T ss_dssp CTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC
T ss_pred CCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc
Confidence 9998 89999999999999999998433377777 99999999999 889999999 55999999999877666554
Q ss_pred ccceeeeEEEEEecCCCeEEEecC-CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 273 HVNNRNFVGLSVWRHGGLLGCGSE-TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
|...+...+++|+|++++|++++. |+.|++|++......+.. .++..++|.|...+...|++++.||
T Consensus 257 ~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 257 PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------------DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp -----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------------EEEEECCC----CCCCEEEEEEETT
T ss_pred ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------------cCceeEecCccccccceeEEEecCC
Confidence 333443333555699999999888 999999999876554332 4567777777554666888888888
Q ss_pred cEEEEEec
Q 017773 352 LLHVFVGK 359 (366)
Q Consensus 352 ~i~iw~~~ 359 (366)
.+.++-..
T Consensus 325 ~~~~~~~~ 332 (343)
T 3lrv_A 325 GIAAILKT 332 (343)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEec
Confidence 88877543
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.8e-35 Score=257.27 Aligned_cols=285 Identities=12% Similarity=0.032 Sum_probs=229.8
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...+.+++|+|++.++++++.++.|++||+.+++... .. . ...+.+|...|.+++|+|+ +.++++++.|+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~-~----~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~ 191 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR---LS-P----PEKYKKKLGFVETISIPEH--NELWVSQMQAN 191 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE---EC-C----CHHHHTTCCEEEEEEEGGG--TEEEEEEGGGT
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee---ec-C----cccccccCCceeEEEEcCC--CEEEEEECCCC
Confidence 4456799999988888998889999999998765432 10 0 0123356678999999998 99999999999
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|++||+++++.+..+..+.. .+.+++|+|+++.++++++.|+.|++||++ +++.+..+.. ...+.+++|+|++
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~--~~~~~~~~~~---~~~~~~~~~~~~g 265 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGK-WSKILLYDPIRDLVYCSNWISEDISVIDRK--TKLEIRKTDK---IGLPRGLLLSKDG 265 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSS-SEEEEEEETTTTEEEEEETTTTEEEEEETT--TTEEEEECCC---CSEEEEEEECTTS
T ss_pred EEEEEECCCceEEEEEcCCCC-CeeEEEEcCCCCEEEEEecCCCcEEEEECC--CCcEEEEecC---CCCceEEEEcCCC
Confidence 999999999998888887776 899999999999887777789999999998 6777777653 3369999999998
Q ss_pred CcEEEEEe--------cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE-EEEEeCCCcEEEEecCCCceeeeee
Q 017773 202 SSLVAAGC--------ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT-LVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 202 ~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
..+++++ .|+.|++||++++ +....+ .|...+..++|+ +++. +++++.|+.|++||+.+++.+..+.
T Consensus 266 -~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 266 -KELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp -SEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred -CEEEEEECCCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 6777776 4889999999886 444443 466688999999 7764 5667899999999999998888776
Q ss_pred cccceeeeEEEEEecCCCeEEEecC---------------CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSE---------------TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
+...+..++++ |++++|++++. ||.|++||+.+++.+..+. +...+.+++|+|
T Consensus 343 -~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---------~~~~~~~~~~s~ 410 (433)
T 3bws_A 343 -VFDKPNTIALS--PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---------AGNQPTGLDVSP 410 (433)
T ss_dssp -CSSSEEEEEEC--TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE---------CSSSEEEEEECT
T ss_pred -CCCCCCeEEEc--CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec---------CCCCCceEEEcC
Confidence 44556666665 99998888766 5799999999998887664 235689999999
Q ss_pred cCCCceEEEEeC-CCCcEEEEEecc
Q 017773 337 VGEDECTLVAGG-SDGLLHVFVGKK 360 (366)
Q Consensus 337 ~~~~~~~l~s~~-~dg~i~iw~~~~ 360 (366)
+|++|++++ .|+.|++|++++
T Consensus 411 ---dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 ---DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ---TSCEEEEEETTTTEEEEEEETT
T ss_pred ---CCCEEEEEECCCCeEEEEEecC
Confidence 888888776 499999999864
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=287.77 Aligned_cols=250 Identities=18% Similarity=0.241 Sum_probs=207.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+|.++|++++|+|++++|++|+.||.|++|++.+... .....+.+|.++|++++|+|+.++++|++|+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----------EEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----------ccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 5999999999999999999999999999999874211 11123445678999999998755899999999
Q ss_pred CCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccC--CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 120 DGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 120 dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
||.|++||+.+++ ....+..|.. .|.+++|+|+ +..+ ++|+.||.|++||++.........+ ..|...|.++
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l-~sgs~dg~I~vwdl~~~~~~~~~~~--~~~~~~v~~l 151 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLL-LVASSDGKVSVVEFKENGTTSPIII--DAHAIGVNSA 151 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEE-EEEETTSEEEEEECCSSSCCCCEEE--ECCSSCEEEE
T ss_pred CCeEEEEECCCCcccccccccCCCC-CeEEEEECCCCCCCEE-EEEeCCCcEEEEEeecCCCcceeEe--ecCCCceEEE
Confidence 9999999999886 6677777777 9999999998 7766 9999999999999983322333333 3677899999
Q ss_pred EEcCC-------------CCcEEEEEecCCeEEEEecCCCC---CCeeEeecccCcEEEEEEc-C---CCEEEEEeCCCc
Q 017773 196 EFHPF-------------GSSLVAAGCADKKAYAYDVRKMV---DPVLVFDGHRKTVTYIRFL-D---VDTLVTAGTDGC 255 (366)
Q Consensus 196 ~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~ 255 (366)
+|+|. + .++++|+.||.|++||+++.. .....+.+|..+|++++|+ + +.+|++++.||.
T Consensus 152 ~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99994 5 799999999999999998763 2345677899999999999 6 789999999999
Q ss_pred EEEEecCCCc-----eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 256 LKLWNVNDSR-----VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 256 i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
|++||+++++ .+.....|...+..++|+ |++++|++|+.||.|++|++..
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC--TTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEc--CCCCEEEEEcCCCEEEEEecCC
Confidence 9999999864 333445577777777777 9999999999999999999974
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-35 Score=259.96 Aligned_cols=259 Identities=19% Similarity=0.338 Sum_probs=211.7
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
...+..+..|+..++....... +|.+.|.+++| ++++|++|+.||.|++||+.+++... . +
T Consensus 149 g~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~---~----------~ 209 (435)
T 1p22_A 149 GLRDNTIKIWDKNTLECKRILT----GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN---T----------L 209 (435)
T ss_dssp EESSSCEEEEESSSCCEEEEEC----CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE---E----------E
T ss_pred EeCCCeEEEEeCCCCeEEEEEc----CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE---E----------E
Confidence 3456667777776666554432 48999999999 78899999999999999998765432 2 3
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee---EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI---FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
.+|...|.+++|++ ..+++|+.||.|++||+.++... ..+.+|.. .|.+++| +++.+ ++|+.||.|++|
T Consensus 210 ~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l-~s~~~dg~i~vw 281 (435)
T 1p22_A 210 IHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYI-VSASGDRTIKVW 281 (435)
T ss_dssp CCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEE-EEEETTSEEEEE
T ss_pred cCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEE-EEEeCCCeEEEE
Confidence 34567899999974 48999999999999999987655 55667776 9999999 45666 999999999999
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEE
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 250 (366)
|++ +++.+..+. +|...|.+++++ + .++++|+.||.|++||++++ +.+..+.+|...|.+++| ++.+|+++
T Consensus 282 d~~--~~~~~~~~~--~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~-~~~~l~sg 352 (435)
T 1p22_A 282 NTS--TCEFVRTLN--GHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF-DNKRIVSG 352 (435)
T ss_dssp ETT--TCCEEEEEE--CCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC-CSSEEEEE
T ss_pred ECC--cCcEEEEEc--CCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe-cCCEEEEE
Confidence 999 788888887 677799999995 3 69999999999999999987 788899999999999999 78899999
Q ss_pred eCCCcEEEEecCCCc---------eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 251 GTDGCLKLWNVNDSR---------VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
+.||.|++||+++++ ++..+.+|...+..+++ ++.+|++++.||.|++||+.+.....
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF----DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE----CSSCEEECCSSSEEEEEC--------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe----CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 999999999998766 78889999998887766 68899999999999999998776543
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=282.14 Aligned_cols=254 Identities=19% Similarity=0.306 Sum_probs=211.7
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC--CCceeEeeecCCCCceeeEEeccC--CCceEEEecCCCcE
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE--KKVPIFERDEHGGRRVWSVDYSKG--DPVLGASGSDDGTM 167 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~~dg~v 167 (366)
.+.+|.++|++++|+|+ +++|++|+.||.|++||+. +++....+.+|.. +|.+++|+|+ +..+ ++|+.||.|
T Consensus 4 ~l~gH~~~V~~l~~s~d--g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l-~s~s~Dg~I 79 (753)
T 3jro_A 4 IANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTIL-ASCSYDGKV 79 (753)
T ss_dssp ----CCCCEEEECCCSS--SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEE-EEEETTSCE
T ss_pred ecccCcceeEEEEECCC--CCeEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEE-EEEeCCCeE
Confidence 45678899999999999 9999999999999999998 4567778888887 9999999987 6666 999999999
Q ss_pred EEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC--CCcEEEEEecCCeEEEEecCCCC-CCeeEeecccCcEEEEEEcC-
Q 017773 168 QMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF--GSSLVAAGCADKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFLD- 243 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~- 243 (366)
++||+. +++.........|...|.+++|+|+ + .++++|+.||.|++||+++.. .....+.+|...|.+++|++
T Consensus 80 ~vwd~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 80 LIWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred EEEECC--CCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999999 5553333333467889999999998 7 899999999999999998762 24556778999999999983
Q ss_pred -------------CCEEEEEeCCCcEEEEecCCC----ceeeeeecccceeeeEEEEEecC---CCeEEEecCCCeEEEE
Q 017773 244 -------------VDTLVTAGTDGCLKLWNVNDS----RVIRTYKGHVNNRNFVGLSVWRH---GGLLGCGSETNQVFVY 303 (366)
Q Consensus 244 -------------~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw 303 (366)
+.++++++.||.|++||++++ .+...+.+|...+.+++|+ |+ +.+|++++.||.|++|
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSSEEEEEEESSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec--cCCCCCCEEEEEecCCEEEEe
Confidence 789999999999999999887 5667788899988888877 98 8999999999999999
Q ss_pred EeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 304 DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
|+.+++..... .......|...|++++|+| ++++|++++.||.|++|+++.
T Consensus 235 d~~~~~~~~~~---~~~~~~~~~~~v~~l~~sp---dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 235 TQDNEQGPWKK---TLLKEEKFPDVLWRASWSL---SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EESSSSSCCBC---CBSSSSCCSSCCCCEEECT---TTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCCCccee---EEeccCCCCCceEEEEEcC---CCCEEEEEcCCCEEEEEecCC
Confidence 99987532111 1122256888999999999 888999999999999999874
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.7e-35 Score=250.47 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=202.2
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCC-ceEEEecCCCcEEE
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDP-VLGASGSDDGTMQM 169 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~dg~v~~ 169 (366)
.+|.+.|++++|+|+ +.+|++++.|+.|++|++.++. ....+..|.. .|.+++|+|+++ .+ ++++.||.|++
T Consensus 8 ~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l-~~~~~dg~i~~ 83 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNTDLQI-YVGTVQGEILK 83 (342)
T ss_dssp SCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEEESSSEEE-EEEETTSCEEE
T ss_pred cCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-ceEEEEECCCCCcEE-EEEcCCCeEEE
Confidence 367789999999999 9999999999999999998876 3444556666 999999999988 66 99999999999
Q ss_pred eeC-CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC---------CCCCeeEeecccCcEEEE
Q 017773 170 WDP-RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK---------MVDPVLVFDGHRKTVTYI 239 (366)
Q Consensus 170 ~d~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~v~~~ 239 (366)
||+ . .++. ..+....|...|.+++|+| + .++++++.|+.|++||+++ . +++..+. |...+.++
T Consensus 84 wd~~~--~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 84 VDLIG--SPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNKIFTM 156 (342)
T ss_dssp ECSSS--SSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCCEEEE
T ss_pred EEecc--CCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCceEEE
Confidence 999 7 4433 4444212788999999999 6 7999999999999999987 5 4555555 88999999
Q ss_pred EEcCCCEEEEEeCCCcEEEEecCC-Cce--eeeeecccceeeeEEEEEec-CCCeEEEecCCCeEEEEEeecC------c
Q 017773 240 RFLDVDTLVTAGTDGCLKLWNVND-SRV--IRTYKGHVNNRNFVGLSVWR-HGGLLGCGSETNQVFVYDVRWG------E 309 (366)
Q Consensus 240 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 309 (366)
+|++.. +++++.|+.|++||+++ +.. ......|...+..++++ | +++++++++.||.|++|+++.. +
T Consensus 157 ~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 157 DTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL--PKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC--SGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC--CCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 998333 99999999999999998 543 33444566677777766 9 9999999999999999999876 5
Q ss_pred eEEEEecccc-cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 310 PVWVHDFEPV-TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 310 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
....+..... ....+|...|.+++|+| ++++|++++.||.|++||++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSP---RHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECT---TTCCEEEEETTSCEEEEETTTTE
T ss_pred cceeeecccccccccccceeEEEEEEcC---CCCEEEEecCCceEEEEcCccHh
Confidence 5555532110 00113455999999999 88899999999999999998643
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.5e-33 Score=244.35 Aligned_cols=268 Identities=13% Similarity=0.044 Sum_probs=216.8
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCce
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~ 133 (366)
.++++++.|+.|++||+.+++... .+..+ ..+.+++|+|+ ++++ ++++.|+.|++||+.+++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~-----------~~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVG-----------SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECS-----------SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecC-----------CCcceEEECCC--CCEEEEECCCCCeEEEEECCCCeE
Confidence 468888999999999998765433 22222 35899999999 8876 6777899999999999998
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK 213 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 213 (366)
+..+..+. .+.+++|+|+++.++++++.++.|++||+. +++.+..+.. ...+.+++|+|++..++++++.++.
T Consensus 67 ~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~--~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 67 IATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTT--SNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp EEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECC--CCeEEEEEeC---CCCcceEEECCCCCEEEEEeCCCCE
Confidence 88887766 899999999999887788888999999999 7777777663 2378999999999545578888999
Q ss_pred EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE
Q 017773 214 AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
|++||++++ +.+..+..+ ..+..++|+ +++.+ ++++.++.|++||+++++.+..+..+ ..+..++++ |++++|
T Consensus 140 v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~--~~g~~l 214 (391)
T 1l0q_A 140 VSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVN--PEGTKA 214 (391)
T ss_dssp EEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEEC--TTSSEE
T ss_pred EEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccceEEC--CCCCEE
Confidence 999999887 566666655 456899999 77776 67788999999999999888777643 455555555 999999
Q ss_pred EEec---CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEE-EEeCCCCcEEEEEecccC
Q 017773 292 GCGS---ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL-VAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 292 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~ 362 (366)
++++ .++.|++||+.+++.+..+.. | ..+.+++|+| ++++| ++++.|+.|++||++++.
T Consensus 215 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------~-~~~~~~~~s~---dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGTNKITARIPV--------G-PDPAGIAVTP---DGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEEECSSCCEEEEEETTTTEEEEEEEC--------C-SSEEEEEECT---TSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEecCcCCCcEEEEECCCCeEEEEEec--------C-CCccEEEEcc---CCCEEEEEcCCCCEEEEEECCCCc
Confidence 9887 689999999999988776642 2 3478999999 87776 677899999999987643
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2e-32 Score=238.62 Aligned_cols=317 Identities=9% Similarity=0.002 Sum_probs=237.8
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceece
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
....+..+..|+.+++.+..... +...+.+++|+|++++| ++++.|+.|++||+.+++... .+..
T Consensus 7 s~~~d~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~---~~~~------ 72 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---TVPA------ 72 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---EEEC------
T ss_pred EcCCCCEEEEEECCCCeEEEEee-----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE---EEEC------
Confidence 34567889999999888765543 34568999999999876 677789999999998765433 2222
Q ss_pred eeeecCCceeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLG-SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
...+.+++|+|+ +++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++.++++++.++.|++|
T Consensus 73 -----~~~v~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 73 -----GSSPQGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp -----SSSEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -----CCCccceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 236999999999 88775 55677999999999998888777655 789999999999887889999999999
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
|+. +++....+... ..+.+++|+|++..++++++.++.|++||+++. +....+. +...+.+++|+ +++++++
T Consensus 144 d~~--~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 144 NTV--TKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp ETT--TTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEE
T ss_pred ECC--CCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEE
Confidence 998 77777777643 367999999999555578888999999999987 4555554 56688999999 8888888
Q ss_pred Ee---CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE-EEecCCCeEEEEEeecCceEEEEecccccccCC-
Q 017773 250 AG---TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL-GCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGS- 324 (366)
Q Consensus 250 ~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~- 324 (366)
++ .++.|++||+++++.+..+..+.. +..++++ |++++| ++++.|+.|++||+.+++.+..+.........+
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s--~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 293 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVT--PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQ 293 (391)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSS
T ss_pred EecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEc--cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccce
Confidence 87 689999999999999888887654 3445555 999877 677889999999999998887765332110000
Q ss_pred -----C-CceeeEEEeeccCCC-----c--eEEEEeCCCCcEEEEEecccC
Q 017773 325 -----E-RGFVSSVCWRRVGED-----E--CTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 325 -----~-~~~v~~~~~~~~~~~-----~--~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+ ........|+..... . ..+...+.|..+++|+...+.
T Consensus 294 ~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 294 FIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp CEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred eeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 0 000111223321101 1 457777789999999986543
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-33 Score=239.80 Aligned_cols=292 Identities=15% Similarity=0.186 Sum_probs=199.0
Q ss_pred ccccccceeeeeecCCCceeeecCCCC-------------------ccCCCceEEEEECC--CCCEEEEeecCCeEEEEE
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPN-------------------AAVSDSIGVIEFDP--SDSVFATGGIARKIRIYN 70 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-------------------~~h~~~i~~~~~s~--~~~~l~t~~~dg~i~iw~ 70 (366)
..|.+.+..+.|++++..++.+..++. .+|...|++++|+| ++++|++|+.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 344555555555555555555544431 23899999999999 699999999999999999
Q ss_pred ceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee------------
Q 017773 71 IKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD------------ 138 (366)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------ 138 (366)
+.++...... ........+..|...|.+++|+|+..+.+|++++.||.|++||+.+++.+..+.
T Consensus 88 ~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 88 EDPDQEECSG----RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp ECTTSCTTSS----CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred cCCCcccccc----cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 9876432210 001122234567789999999996337899999999999999998876544332
Q ss_pred -cCCCCceeeEEeccC---CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC---cEEEEEecC
Q 017773 139 -EHGGRRVWSVDYSKG---DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS---SLVAAGCAD 211 (366)
Q Consensus 139 -~~~~~~v~~i~~~~~---~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d 211 (366)
.+.. .+.+++|+|+ +..+ ++++.++.+.+|+.. .++........+|...|.+++|+|++. .+|++|+.|
T Consensus 164 ~~~~~-~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 164 ANHLQ-SDFCLSWCPSRFSPEKL-AVSALEQAIIYQRGK--DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp SSCSC-CCEEEEECCCSSSCCEE-EEEETTEEEEEEECT--TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred CCccc-ceeEEEeccCCCCCcEE-EEecCCCcEEEEccC--CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 3444 8999999997 5555 999999999888877 555433444447888999999999973 699999999
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE----EEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEec
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL----VTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWR 286 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l----~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (366)
|.|++||++... .......+.......... ....+ ..+.....+.+|+....+++..+.+|...|..++|+ |
T Consensus 240 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~ 316 (351)
T 3f3f_A 240 GRIRIFKITEKL-SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN--L 316 (351)
T ss_dssp SCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC--S
T ss_pred CeEEEEeCCCCc-CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc--C
Confidence 999999998763 222222222222222222 22222 233345567777777788899999999998888877 9
Q ss_pred CCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 287 HGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 287 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
++++|++++.||.|++||+.+++....+
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999999988766544
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=241.93 Aligned_cols=270 Identities=13% Similarity=0.178 Sum_probs=210.3
Q ss_pred ccccccceeeeeecCC---CceeeecCCCCc-----------------cCCCceEEEEECCCCCEEEEeecCCeEEEEEc
Q 017773 12 AETTNERARCEWDFNL---RTTVSSSSSPNA-----------------AVSDSIGVIEFDPSDSVFATGGIARKIRIYNI 71 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~---~~~~~~~~~~~~-----------------~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~ 71 (366)
..|.+.+..+.|+++. ..++.+..++.+ +|...|++++|+|++++|++++.||.|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 3455666666666663 555555544322 28999999999999999999999999999999
Q ss_pred eecccccceeeeecCceeceeeeecCCceeEEEE--ecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEE
Q 017773 72 KSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKW--KPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVD 149 (366)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~ 149 (366)
.+.+... ...|..+|.+++| +|+ +.+|++++.||.|++||+.+++.+..+..+. .+.++.
T Consensus 116 ~~~~~~~--------------~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~ 177 (368)
T 3mmy_A 116 SSNQAIQ--------------IAQHDAPVKTIHWIKAPN--YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCAD 177 (368)
T ss_dssp TTTEEEE--------------EEECSSCEEEEEEEECSS--CEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEE
T ss_pred CCCCcee--------------eccccCceEEEEEEeCCC--CCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEE
Confidence 8754321 2346778999999 666 9999999999999999999999888888776 677777
Q ss_pred eccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC---cEEEEEecCCeEEEEecCCCC--C
Q 017773 150 YSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS---SLVAAGCADKKAYAYDVRKMV--D 224 (366)
Q Consensus 150 ~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~--~ 224 (366)
+.+ ..+ ++++.++.+++|+++ ................+.++++.++.. ..+++++.||.|++||++... .
T Consensus 178 ~~~--~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 178 VIY--PMA-VVATAERGLIVYQLE--NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EET--TEE-EEEEGGGCEEEEECS--SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred ecC--Cee-EEEeCCCcEEEEEec--cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 764 345 778889999999998 333333332223344666676665441 239999999999999998763 2
Q ss_pred CeeEeecccC------------cEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE
Q 017773 225 PVLVFDGHRK------------TVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 225 ~~~~~~~~~~------------~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
....+..|.. +|++++|+ ++++|++++.||.|++||+++++++..+..|...+..++|+ |++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l 330 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN--HNGNIF 330 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC--TTSSCE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC--CCCCeE
Confidence 4556666665 79999999 88999999999999999999999999999999988888877 999999
Q ss_pred EEecCCCeEEEEEee
Q 017773 292 GCGSETNQVFVYDVR 306 (366)
Q Consensus 292 ~~~~~dg~i~iwd~~ 306 (366)
++++.|+..+.|++.
T Consensus 331 ~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 331 AYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEECCCSTTCGGGC
T ss_pred EEEeccccccccccc
Confidence 999998765555543
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5e-34 Score=248.46 Aligned_cols=248 Identities=13% Similarity=0.044 Sum_probs=175.7
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEec--------CCCCc
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKP--------GTSGR 112 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~ 112 (366)
|...+....+++++.+||+|+.|++|+|||..++.... ......+.+|.+.|++++|+| + ++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~ 157 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT--------QHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQ 157 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEE--------EEEECTTTSCSSCEEEEEEEEEECTTCSEE--EE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce--------eeeecccCCCCCceEEEEEccccccccCCC--CC
Confidence 34444445555667789999999999999998754322 011123557888999999998 5 89
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee---------
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV--------- 183 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~--------- 183 (366)
+|++|+.|++|++||+.++.+...+..|.. +|.+++|+|++..++++++.|+.|++||++ +++.....
T Consensus 158 ~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~--t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 158 VIASVGDDCTLIIWRLTDEGPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWT--LNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETT--CCC----------CSCC
T ss_pred EEEEEECCCeEEEEECCCCceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECC--CCcccccccccCCcccc
Confidence 999999999999999998888888888877 999999999987766999999999999998 43322211
Q ss_pred --------------cCCCCCCCeEEEEEc-CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE----------
Q 017773 184 --------------QPSASRSAVCCVEFH-PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY---------- 238 (366)
Q Consensus 184 --------------~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~---------- 238 (366)
...+|...+.++.|+ |++ ..+++++.|+.+++||+... +....+..|...+..
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred eEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccc
Confidence 112566788899987 676 89999999999999999876 333333333333222
Q ss_pred ---------EEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 239 ---------IRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 239 ---------~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
+.+. ++.++++++.||.|++||+.+++.+..+..|..+|..++|+ |+|++||+++.+| +.+|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs--pdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH--QDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC--TTSSEEEEEESSE-EEEEEEG
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc--CCCCEEEEEeCCC-eEEEEEe
Confidence 2222 33356778889999999999999998888898888877776 9999999998765 6777664
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-32 Score=238.84 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=195.4
Q ss_pred cCCCceEEEEECCCCCEE-EEeecCCeEEEEEce--ecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 40 AVSDSIGVIEFDPSDSVF-ATGGIARKIRIYNIK--SVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
.|.+.|++++|+|++++| ++|+.||.|++|++. ++.... .+.. ..|...|.+++|+|+ +.+|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~---~~~~--------~~~~~~v~~~~~sp~--~~~l~~ 166 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK---LRKR--------FCFSKRPNAISIAED--DTTVII 166 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE---EEEE--------EECSSCEEEEEECTT--SSEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee---eeec--------ccCCCCceEEEEcCC--CCEEEE
Confidence 356689999999999996 899999999999998 544332 2211 134568999999999 999999
Q ss_pred EcCCCcEEEEeCCCCceeE----eeecCCCCceeeEEeccC---CCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 117 GDYDGVVMEYDLEKKVPIF----ERDEHGGRRVWSVDYSKG---DPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 117 ~~~dg~i~iw~~~~~~~~~----~~~~~~~~~v~~i~~~~~---~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
|+.+|.|++|++.+++... .+..|.. .|.+++|+|+ ++.+ ++++.|+.|++||++ .++.+..+. .+|.
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~-~~h~ 241 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFI-ITSDRDEHIKISHYP--QCFIVDKWL-FGHK 241 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEECSS-CEEEEEEEECTTSCEEE-EEEETTSCEEEEEES--CTTCEEEEC-CCCS
T ss_pred EeCCCcEEEEecCCcccccccceeeecccC-ceEEEEEcCCCCCCcEE-EEEcCCCcEEEEECC--CCceeeeee-cCCC
Confidence 9999999999998876543 6677776 9999999998 6666 999999999999998 667666532 2677
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-------------------------ccCcEEEEEEc-C
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-------------------------HRKTVTYIRFL-D 243 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~~~~v~~~~~~-~ 243 (366)
..|.+++|+ ++ .+|++|+.|+.|++||++++ +.+..+.. ....+..++|+ +
T Consensus 242 ~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 242 HFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SCEEEEEEC-ST-TEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CceEEEEEC-CC-CEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 899999999 87 89999999999999999987 56666652 23568999999 8
Q ss_pred CCEEEEEe-CCCcEEEEec--CCC---ceeeeeecccceeeeEEEEEecCCCeEEEecC------CCeEEEEEeecC
Q 017773 244 VDTLVTAG-TDGCLKLWNV--NDS---RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE------TNQVFVYDVRWG 308 (366)
Q Consensus 244 ~~~l~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 308 (366)
++++++++ .|+.|++|++ .++ +.+..+..| ..+..++|+ |++.++++++. +..|.+|.+...
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~--~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAH--NDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEE--TTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEec--CCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 89999988 8999999999 555 677778877 566666666 86544544443 556899988743
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.8e-32 Score=234.23 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=188.5
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
..|..+|++++|+|+ +++|++|+.++ +++|+++.++.......+ .+..+++.++++.++++++.|+.|++||+.
T Consensus 16 ~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ---CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred ccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 456678999999999 99999998775 789999887665544332 477788888888887788889999999998
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEE--Ee
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVT--AG 251 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~--~~ 251 (366)
+++.+..+. +...|.+++++++. ++++ .++.|++||+++..+.+..+.. +...++++. .+++. ++
T Consensus 90 --~~~~~~~~~---~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~ 156 (355)
T 3vu4_A 90 --KKQDVSRIK---VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEF 156 (355)
T ss_dssp --TTEEEEEEE---CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESS
T ss_pred --CCcEEEEEE---CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCC
Confidence 788888776 34489999999853 3333 4789999999886344444443 333344444 56665 68
Q ss_pred CCCcEEEEecCCCc---------------e-eeeeecccceeeeEEEEEecCCCeEEEecCCCe-EEEEEeecCceEEEE
Q 017773 252 TDGCLKLWNVNDSR---------------V-IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQ-VFVYDVRWGEPVWVH 314 (366)
Q Consensus 252 ~d~~i~iwd~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~ 314 (366)
.||.|++||+++++ + +..+.+|...|.+++|+ |++++|++|+.|++ |++||+++++.+..+
T Consensus 157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s--~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN--RKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp CTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC--TTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999999865 2 78889999999888887 99999999999998 999999999988776
Q ss_pred ecccccccCC-CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 315 DFEPVTAAGS-ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 315 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
. .+ |...|++++|+| ++++|++++.|+.|++|+++..
T Consensus 235 ~-------~g~h~~~v~~~~~s~---~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 235 R-------RGLDRADVVDMKWST---DGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp E-------CTTCCSCEEEEEECT---TSCEEEEEETTCEEEEEESSCC
T ss_pred E-------cCCCCCcEEEEEECC---CCCEEEEEECCCEEEEEEccCC
Confidence 4 23 889999999999 8889999999999999999754
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.5e-31 Score=240.97 Aligned_cols=318 Identities=13% Similarity=0.067 Sum_probs=240.5
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEc--eecccccceeeeecCceece
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNI--KSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~ 91 (366)
...+..+..|+..++.++.....+ +. +..++|+|+|++|++++.|+.|++||+ .+.+... .+..
T Consensus 155 ~~~d~~V~v~D~~t~~~~~~i~~g---~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~---~i~~------ 220 (543)
T 1nir_A 155 LRDAGQIALVDGDSKKIVKVIDTG---YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA---EIKI------ 220 (543)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECS---TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE---EEEC------
T ss_pred EcCCCeEEEEECCCceEEEEEecC---cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE---EEec------
Confidence 345677888999888876655422 32 889999999999999999999999999 5543322 2221
Q ss_pred eeeecCCceeEEEEec----CCCCcEEEEEcC-CCcEEEEeCCCCceeEeeecC----------CCCceeeEEeccCCCc
Q 017773 92 YYICTPAKLSSLKWKP----GTSGRVLGSGDY-DGVVMEYDLEKKVPIFERDEH----------GGRRVWSVDYSKGDPV 156 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~----~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~ 156 (366)
...+..++|+| + |++|++++. +++|.+||..+++++..+..+ ....+..+.++|+++.
T Consensus 221 -----g~~p~~va~sp~~~~d--g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 221 -----GIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp -----CSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred -----CCCcceEEeCCCcCCC--CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 23578999999 9 999988874 899999999999888877642 2336889999999998
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeE--eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec---
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVS--TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--- 231 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--- 231 (366)
++++...++.|.+||.. +.+.+. .+. +...+..++|+|+|+.+++++..+++|.+||+.++ +.+..+..
T Consensus 294 ~~vs~~~~g~i~vvd~~--~~~~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ 367 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYK--DIDNLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKT 367 (543)
T ss_dssp EEEEETTTTEEEEEECT--TSSSCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSS
T ss_pred EEEEECCCCeEEEEEec--CCCcceeEEec---cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCC
Confidence 88999999999999998 444333 333 33478889999999545556667899999999987 56666653
Q ss_pred -ccCcEEEEEEcC-CCEEEEEe-CCCcEEEEecCC-------CceeeeeecccceeeeEEEEEecCCCeEEEec------
Q 017773 232 -HRKTVTYIRFLD-VDTLVTAG-TDGCLKLWNVND-------SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS------ 295 (366)
Q Consensus 232 -~~~~v~~~~~~~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 295 (366)
|.+....+...+ +..++++. .|++|.+||+.+ ++.++++.+|...+..++++ |++++|++++
T Consensus 368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~--pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH--PKSSHLYVDTTFNPDA 445 (543)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC--TTCCEEEECCTTCSSH
T ss_pred CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC--CCCCcEEEecCCCCCc
Confidence 554444443234 55666765 589999999998 89999999988776667766 9999999987
Q ss_pred -CCCeEEEEEeecCceE-EEEecccccccCCCCceeeEEEeeccCCCceEEEEe-----CCCCcEEEEEecccCC
Q 017773 296 -ETNQVFVYDVRWGEPV-WVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG-----GSDGLLHVFVGKKKPL 363 (366)
Q Consensus 296 -~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~l 363 (366)
.+++|.+||+.+++.. ..+......-+..+...+..++|+| +|+.|+.+ +.|+.|.|||.++.++
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK---RGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS---SSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC---CCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 2679999999998876 3333322122244678899999999 88888765 3479999999987543
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=232.57 Aligned_cols=269 Identities=10% Similarity=0.053 Sum_probs=199.2
Q ss_pred cccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 11 QAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
+.....+..+..|+..++..+.... ...|.++.|+|+ +++++.|++|++|+........ .........
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~---~~~~~~~~~ 118 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL---DSKTNKVLR 118 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE---ETTTCCEEE
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe---ecCCcceeE
Confidence 3445668888999998877665543 456888889988 9999999999999876422110 000000011
Q ss_pred eeeeecCCceeEEEEec--CCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 91 DYYICTPAKLSSLKWKP--GTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
.....|..+|.+++|+| + ++++++++.||+|++||+++++.......+....|.+++|+|++..+ ++|+.||.|+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l-asg~~dg~i~ 195 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVN--TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL-ALYSPDGILD 195 (343)
T ss_dssp EEECCCSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE-EEECTTSCEE
T ss_pred EeecCCCCCEEEEEcCCCCC--CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE-EEEcCCCEEE
Confidence 12234567899999999 8 99999999999999999999988776655555489999999998877 9999999999
Q ss_pred EeeCCCCCCcee-EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec---ccCcEE--EEEEc
Q 017773 169 MWDPRCDGGKCV-STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG---HRKTVT--YIRFL 242 (366)
Q Consensus 169 ~~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~--~~~~~ 242 (366)
+||++ +++.. ..+.. .|..+|.+++|+|++ .+|++++ ++.|++||+++. +....+.. |...+. +++|+
T Consensus 196 iwd~~--~~~~~~~~~~~-~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 196 VYNLS--SPDQASSRFPV-DEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp EEESS--CTTSCCEECCC-CTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEEC
T ss_pred EEECC--CCCCCccEEec-cCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEEC
Confidence 99999 66665 55553 378899999999998 7899988 559999999987 44433332 434444 69999
Q ss_pred -CCCEEEEEeC-CCcEEEEecCCCceeeeeecccceeeeEEEEEec---CCCeEEEecCCCeEEEEEee
Q 017773 243 -DVDTLVTAGT-DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWR---HGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 243 -~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~ 306 (366)
++++|++++. |+.|++|++.+....... .++..+++. + +...+++++.||.+.++-..
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQ--SDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC------CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecC--ccccccceeEEEecCCceEEEEec
Confidence 8999999998 999999999766443332 344555555 6 88899999999999987643
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=6.7e-32 Score=222.34 Aligned_cols=265 Identities=13% Similarity=0.098 Sum_probs=180.7
Q ss_pred cccccccceeeeeecCCC---ceeeecCCCCccCCCceEEEEECCCCC-EEEEeecCCeEEE---EEceeccc---ccce
Q 017773 11 QAETTNERARCEWDFNLR---TTVSSSSSPNAAVSDSIGVIEFDPSDS-VFATGGIARKIRI---YNIKSVLV---DHPV 80 (366)
Q Consensus 11 ~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~t~~~dg~i~i---w~~~~~~~---~~~~ 80 (366)
=...+.+..+..|++... +.+..... |+.+|..+.+.||.. ++..+- |.+.+ +.+.-... ....
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~v~sla~spd~~~~~~~ 129 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHF----AEVPVLQIVPVPDVYNLVCVAL--GNLEIREIRALFCSSDDESEKQV 129 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEEC----CSSCEEEECCCTTCCSCEEEEE--CSSSEEEEEEECC------CCEE
T ss_pred EEEEeccceEEEcccCCCccceeeEEEec----cCceeEEEEEcCcccceeeeee--ccccccceEEEEECCCccccccE
Confidence 345566778888988877 55544432 677788888888653 222221 11111 11110000 0000
Q ss_pred eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc--CCCcEEEEeC-CCCceeEeeecCCCCceeeEEecc---CC
Q 017773 81 VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD--YDGVVMEYDL-EKKVPIFERDEHGGRRVWSVDYSK---GD 154 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iw~~-~~~~~~~~~~~~~~~~v~~i~~~~---~~ 154 (366)
... .+|...|..+ ++ ++++.+++ .|+.|++|++ .+++.+..+..|.. .+..++|++ ++
T Consensus 130 l~s----------~g~~~~v~~l---~~--g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~ 193 (356)
T 2w18_A 130 LLK----------SGNIKAVLGL---TK--RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQ 193 (356)
T ss_dssp EEE----------EEEEEEEEEE---TT--TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETST
T ss_pred EEe----------CCCeEEEEec---CC--CcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCC
Confidence 000 1112234443 44 77777754 6999999999 45787888888887 888999998 55
Q ss_pred CceEEEecCCCcEEEeeCCCCCCceeEeecCCC-CCCCeEEEEEcCCCCcEE------------EEEecCCeEEEEecCC
Q 017773 155 PVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA-SRSAVCCVEFHPFGSSLV------------AAGCADKKAYAYDVRK 221 (366)
Q Consensus 155 ~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~ 221 (366)
..+ ++++.|++|++||++ ++++++.+.... +...+.+++|+|+| .++ ++|+.|++|++||..+
T Consensus 194 ~~L-aSgS~D~TIkIWDl~--TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 194 EAL-LGTTIMNNIVIWNLK--TGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp TEE-EEEETTSEEEEEETT--TCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTT
T ss_pred ceE-EEecCCCcEEEEECC--CCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 665 999999999999999 899999987321 23478888999998 554 6688999999999988
Q ss_pred CCCCeeEe-----ecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceee-eEEEEEecCCCeEEEec
Q 017773 222 MVDPVLVF-----DGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRN-FVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 222 ~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 295 (366)
+ +.+..+ .+|...+.+..+ ++.++++++.|++|+|||+.+++++.++.+|...+. .++|+ |||++|++|+
T Consensus 270 g-k~l~v~~~~~p~Gh~~~~lsg~~-sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS--PDG~~LaSGS 345 (356)
T 2w18_A 270 T-LSVGVMLYCLPPGQAGRFLEGDV-KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS--GTDSHLLAGQ 345 (356)
T ss_dssp T-EEEEEEEECCCTTCCCCEEEEEE-ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC--SSSSEEEEEC
T ss_pred C-EEEEEEEeeccCCCcceeEcccc-CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC--CCCCEEEEEE
Confidence 7 454443 366655544444 477899999999999999999999999999887654 35666 9999999999
Q ss_pred CCCeEEEEEe
Q 017773 296 ETNQVFVYDV 305 (366)
Q Consensus 296 ~dg~i~iwd~ 305 (366)
.|++|+|||+
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999996
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.2e-31 Score=218.29 Aligned_cols=298 Identities=9% Similarity=0.030 Sum_probs=191.8
Q ss_pred ecCCCceeeecCCCCccCCCceEEEEECCCCC---EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCce
Q 017773 24 DFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDS---VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKL 100 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (366)
++.+-.++....++.-...-.+.++-|-..|- .+++++ +..|++|+..+...-....+...+ ..+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~----------~~~v 89 (356)
T 2w18_A 21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFA----------EVPV 89 (356)
T ss_dssp ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECC----------SSCE
T ss_pred CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEecc----------Ccee
Confidence 34444555555554222333456666655543 677777 468999999886332333344444 4568
Q ss_pred eEEEEecCCCCcEEEEEcCCC---cEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEec--CCCcEEEee
Q 017773 101 SSLKWKPGTSGRVLGSGDYDG---VVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGS--DDGTMQMWD 171 (366)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--~dg~v~~~d 171 (366)
..+.+.|+. .+++..+-.+= .|+..-+... .......++.. .|.++ ++ ..++.++. .|+.|++|+
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~-~v~~l---~~-g~lv~ss~~g~d~~V~~~~ 163 (356)
T 2w18_A 90 LQIVPVPDV-YNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIK-AVLGL---TK-RRLVSSSGTLSDQQVEVMT 163 (356)
T ss_dssp EEECCCTTC-CSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEE-EEEEE---TT-TEEEEEESSSTTCEEEEEE
T ss_pred EEEEEcCcc-cceeeeeeccccccceEEEEECCCccccccEEEeCCCeE-EEEec---CC-CcEEEecccCCCCcEEEEE
Confidence 888888862 22332221111 1111111111 11111122222 45444 34 44435533 599999999
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcC---CCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc---CcEEEEEEc-CC
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHP---FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR---KTVTYIRFL-DV 244 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~-~~ 244 (366)
+. ++++.+..+. .|...+..++|+| ++ .+|++|+.|++|++||++++ +.+.++.+|. ..+.+++|+ ++
T Consensus 164 ~s-~dG~~~~s~~--~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG 238 (356)
T 2w18_A 164 FA-EDGGGKENQF--LMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMG 238 (356)
T ss_dssp EC-TTSCEEEEEE--ECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETT
T ss_pred EC-CCCceeeeec--cCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCC
Confidence 96 2467777666 4555788888888 55 89999999999999999998 7888887654 357777898 77
Q ss_pred CEE------------EEEeCCCcEEEEecCCCceeeee-----ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 245 DTL------------VTAGTDGCLKLWNVNDSRVIRTY-----KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 245 ~~l------------~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
.++ ++|+.|++|++||..+++.+..+ .+|... .+..+ .++.++++|+.|++|+|||+.+
T Consensus 239 ~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~--~sg~~lASgS~DgTIkIWDl~t 314 (356)
T 2w18_A 239 LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGD--VKDHCAAAILTSGTIAIWDLLL 314 (356)
T ss_dssp EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEE--EETTEEEEEETTSCEEEEETTT
T ss_pred CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccc--cCCCEEEEEcCCCcEEEEECCC
Confidence 765 56788999999999999887765 255443 33444 4488999999999999999999
Q ss_pred CceEEEEecccccccCCCCceee-EEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 308 GEPVWVHDFEPVTAAGSERGFVS-SVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
++.+..+ .+|...+. .++|+| ||++|++|+.|++|+|||+
T Consensus 315 Gk~l~tL--------~gH~~~vvs~vafSP---DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 315 GQCTALL--------PPVSDQHWSFVKWSG---TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSEEEEE--------CCC--CCCCEEEECS---SSSEEEEECTTSCEEEEEE
T ss_pred CcEEEEe--------cCCCCCeEEEEEECC---CCCEEEEEECCCcEEEecC
Confidence 9998877 45666554 689999 8889999999999999996
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.6e-30 Score=225.32 Aligned_cols=263 Identities=14% Similarity=0.099 Sum_probs=206.6
Q ss_pred ccceeeeeecCCCceeeecCC-CCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeee
Q 017773 16 NERARCEWDFNLRTTVSSSSS-PNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYI 94 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~-~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (366)
.+..+..|+..++........ ...+|.+.|.+++|+|+++++++++.|+.|++||+.+.+... .+.
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~---------- 208 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVD---------- 208 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEE----------
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEc----------
Confidence 345577777776665532211 123588899999999999999999999999999997654432 222
Q ss_pred ecCCceeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec--------CCC
Q 017773 95 CTPAKLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS--------DDG 165 (366)
Q Consensus 95 ~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--------~dg 165 (366)
.|...+.+++|+|+ ++.+ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++ .|+
T Consensus 209 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l-~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 209 LTGKWSKILLYDPI--RDLVYCSNWISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKEL-YIAQFSASNQESGGG 283 (433)
T ss_dssp CSSSSEEEEEEETT--TTEEEEEETTTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEE-EEEEEESCTTCSCCE
T ss_pred CCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEE-EEEECCCCccccCCC
Confidence 34567999999998 8777 556689999999999998877776644 79999999999988 5555 588
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CC
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DV 244 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~ 244 (366)
.|++||+. +++....+. +...+.+++|+|+++.++++++.++.|++||+++. +....+. +...+.+++|+ ++
T Consensus 284 ~i~~~d~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 284 RLGIYSMD--KEKLIDTIG---PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp EEEEEETT--TTEEEEEEE---EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTS
T ss_pred eEEEEECC--CCcEEeecc---CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCC
Confidence 99999998 666666653 33478999999998667788899999999999976 5555554 67789999999 88
Q ss_pred CEEEEEeC---------------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec-CCCeEEEEEee
Q 017773 245 DTLVTAGT---------------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVR 306 (366)
Q Consensus 245 ~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 306 (366)
+++++++. ||.|++||+.+++.+..+..+. .+..++++ |++++|++++ .|+.|++|+++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-QPTGLDVS--PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-SEEEEEEC--TTSCEEEEEETTTTEEEEEEET
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-CCceEEEc--CCCCEEEEEECCCCeEEEEEec
Confidence 88888776 5799999999999988887643 45555555 9999998776 49999999986
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.7e-28 Score=221.25 Aligned_cols=280 Identities=13% Similarity=0.007 Sum_probs=218.7
Q ss_pred EECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 017773 49 EFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDL 128 (366)
Q Consensus 49 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 128 (366)
+|+|++.++++++.|++|.+||..+++... .+... + .+..++|+|+ +++|++++.|+.|.+||+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g---------~--~~~~v~~spd--g~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTG---------Y--AVHISRMSAS--GRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECS---------T--TEEEEEECTT--SCEEEEEETTSEEEEEET
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecC---------c--ccceEEECCC--CCEEEEECCCCeEEEEEC
Confidence 388999999999999999999998766543 22211 1 2789999999 999999999999999999
Q ss_pred --CCCceeEeeecCCCCceeeEEecc----CCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC--------C-CCCeE
Q 017773 129 --EKKVPIFERDEHGGRRVWSVDYSK----GDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA--------S-RSAVC 193 (366)
Q Consensus 129 --~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~--------~-~~~i~ 193 (366)
.+++.+.++..+. .+..++|+| ++++++++...+++|.+||.. +.+++..+...+ | ...+.
T Consensus 208 ~~~t~~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~--t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 208 WAKEPTKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE--TLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp TSSSCEEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT--TCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred cCCCCcEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc--ccccceeecccCcccCccccccCCceE
Confidence 7888888887543 789999999 999984444468999999998 788888876432 1 23788
Q ss_pred EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCCCceeeeee
Q 017773 194 CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 194 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~ 271 (366)
.+.++|++..++++...++.|.+||+.+..........+...+..+.|+ ++++|+++ ..+++|.+||..+++++..+.
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 9999998878888888999999999987633322222355678889999 88877655 468899999999999988887
Q ss_pred c----ccceeeeEEEEEecC-CCeEEEec-CCCeEEEEEeec-------CceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 272 G----HVNNRNFVGLSVWRH-GGLLGCGS-ETNQVFVYDVRW-------GEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 272 ~----~~~~~~~~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
. |... ...+ ++|+ +.+++++. .|++|.+||+.+ .+.+..+ ..|.+.+..++++|
T Consensus 364 ~g~~ph~g~--g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l--------~~~g~~~~~v~~~p-- 430 (543)
T 1nir_A 364 VGKTPHPGR--GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--------QGQGGGSLFIKTHP-- 430 (543)
T ss_dssp CSSSBCCTT--CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE--------ECSCSCCCCEECCT--
T ss_pred cCCCCCCCC--Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE--------EcCCCCceEEEcCC--
Confidence 4 4322 2233 3477 66677765 689999999998 6777766 34667788999999
Q ss_pred CCceEEEEeC-------CCCcEEEEEecccC
Q 017773 339 EDECTLVAGG-------SDGLLHVFVGKKKP 362 (366)
Q Consensus 339 ~~~~~l~s~~-------~dg~i~iw~~~~~~ 362 (366)
++++|++++ .+++|.+||+++..
T Consensus 431 -dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 431 -KSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp -TCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred -CCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 888999987 27799999998754
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=3.5e-28 Score=212.86 Aligned_cols=278 Identities=12% Similarity=0.063 Sum_probs=204.1
Q ss_pred eeeeeec--CCCceeeecCCCCccCCCceEEEEECC--------------CCCEEEEeecC------CeEEEEEceeccc
Q 017773 19 ARCEWDF--NLRTTVSSSSSPNAAVSDSIGVIEFDP--------------SDSVFATGGIA------RKIRIYNIKSVLV 76 (366)
Q Consensus 19 ~~~~w~~--~~~~~~~~~~~~~~~h~~~i~~~~~s~--------------~~~~l~t~~~d------g~i~iw~~~~~~~ 76 (366)
.+..|+. .++..+... ...+|...+..+++++ .+..++.++.+ +.|++||++....
T Consensus 94 ~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~ 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQN--SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC
T ss_pred EEEEEeCCCCCCCEEeee--EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC
Confidence 7789998 776654321 1223666777777664 15566666554 7999999874321
Q ss_pred ccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCceeEeeecCCCCceeeEEeccC
Q 017773 77 DHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG---VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG 153 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~ 153 (366)
. . +..|...+.+++|+|+ |++|++++.++ .|++||+.+++.. .+..+.. .+.+++|+|+
T Consensus 172 -~---~----------l~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~-~~~~~~~spd 233 (415)
T 2hqs_A 172 -F---V----------VHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR-HNGAPAFSPD 233 (415)
T ss_dssp -E---E----------EEEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS-CEEEEEECTT
T ss_pred -E---E----------EeCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC-cccCEEEcCC
Confidence 1 2 3345568999999999 99999998775 9999999988765 4555555 8999999999
Q ss_pred CCceEEEecCCCc--EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-CC--eEEEEecCCCCCCeeE
Q 017773 154 DPVLGASGSDDGT--MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-DK--KAYAYDVRKMVDPVLV 228 (366)
Q Consensus 154 ~~~l~~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~ 228 (366)
++.++++++.++. |++||+. +++. ..+. .+...+.+++|+|+| +.|++++. ++ .|++||+.++ ....
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~--~~~~-~~l~--~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~--~~~~ 305 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLA--SGQI-RQVT--DGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGG--APQR 305 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETT--TCCE-EECC--CCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CCEE
T ss_pred CCEEEEEEecCCCceEEEEECC--CCCE-EeCc--CCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCC--CEEE
Confidence 9988667777665 9999998 5554 3333 456689999999999 66666654 45 6888898876 2445
Q ss_pred eecccCcEEEEEEc-CCCEEEEEeCC---CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC---eEE
Q 017773 229 FDGHRKTVTYIRFL-DVDTLVTAGTD---GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN---QVF 301 (366)
Q Consensus 229 ~~~~~~~v~~~~~~-~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~ 301 (366)
+..+...+..++|+ ++++|++++.+ ..|.+||+.+++.. .+..+. .+..++|+ |+|++|++++.++ .|+
T Consensus 306 l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~s--pdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 306 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLA--PNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEEC--TTSSEEEEEEEETTEEEEE
T ss_pred EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEc--CCCCEEEEEEcCCCccEEE
Confidence 55677788999999 99999888764 58999999988763 455553 45555555 9999999888776 799
Q ss_pred EEEeecCceEEEEecccccccCCCCceeeEEEeecc
Q 017773 302 VYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRV 337 (366)
Q Consensus 302 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 337 (366)
+||+..+. ...+ ..|.+.|.+++|+|.
T Consensus 382 ~~d~~g~~-~~~l--------~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 382 LVSTDGRF-KARL--------PATDGQVKFPAWSPY 408 (415)
T ss_dssp EEETTSCC-EEEC--------CCSSSEEEEEEECCC
T ss_pred EEECCCCc-EEEe--------eCCCCCCcCCccccc
Confidence 99987443 3333 557899999999994
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.9e-28 Score=213.40 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=204.3
Q ss_pred CCceEEEEECCCCC-EEEEee----cCC----eEEEEEc--eecccccceeeeecCceeceeeeecCCceeEEEEecC--
Q 017773 42 SDSIGVIEFDPSDS-VFATGG----IAR----KIRIYNI--KSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG-- 108 (366)
Q Consensus 42 ~~~i~~~~~s~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 108 (366)
...+...+|++.|. ++++|+ .+| .++|||+ .+++... ...+. +|...+..+++++.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~d~ 130 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-QNSYK----------VNKQWLRYAGHTASDE 130 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-EEEEE----------ECGGGHHHHHHHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-eeEEE----------cChhHHHHHHHHHHHH
Confidence 34678888988874 666876 467 8999999 7665321 11233 33345555555531
Q ss_pred ----------CCCcEEEEEcCC------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC---cEEE
Q 017773 109 ----------TSGRVLGSGDYD------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG---TMQM 169 (366)
Q Consensus 109 ----------~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg---~v~~ 169 (366)
..+..++.++.+ +.|++||++. .....+..|.. .+.+++|+|+++.+ ++++.++ .|++
T Consensus 131 ~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~-~v~~~~~Spdg~~l-a~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 131 VFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-PLMSPAWSPDGSKL-AYVTFESGRSALVI 207 (415)
T ss_dssp HHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS-CEEEEEECTTSSEE-EEEECTTSSCEEEE
T ss_pred HHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC-cceeeEEcCCCCEE-EEEEecCCCcEEEE
Confidence 003455554433 7999999975 44566667766 89999999999988 7777664 9999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe--EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK--AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
||+. +++... +. .+...+.+++|+|+|..++++++.++. |++||++++ ....+..|...+.+++|+ +++.
T Consensus 208 ~d~~--tg~~~~-l~--~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~ 280 (415)
T 2hqs_A 208 QTLA--NGAVRQ-VA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQN 280 (415)
T ss_dssp EETT--TCCEEE-EE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSE
T ss_pred EECC--CCcEEE-ee--cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--CEEeCcCCCCcccceEECCCCCE
Confidence 9998 666543 33 355689999999999444447766654 999999886 346677788899999999 8998
Q ss_pred EEEEeC-CC--cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC---CeEEEEEeecCceEEEEeccccc
Q 017773 247 LVTAGT-DG--CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET---NQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 247 l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
|++++. ++ .|.+||+.+++. ..+..+...+..++|+ |+|++|++++.+ ..|++||+.+++... +
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s--pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l------ 350 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L------ 350 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEETTTCCEEE-C------
T ss_pred EEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEEC--CCCCEEEEEECcCCceEEEEEECCCCCEEE-e------
Confidence 888776 44 677889887764 3455555555555555 999999888764 589999999887632 2
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeCCCC---cEEEEEecccC
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSDG---LLHVFVGKKKP 362 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~ 362 (366)
..+. .+.+++|+| +|++|++++.|+ .|++|+++++.
T Consensus 351 --~~~~-~~~~~~~sp---dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 351 --SSTF-LDETPSLAP---NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp --CCSS-SCEEEEECT---TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred --cCCC-CcCCeEEcC---CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 2233 789999999 888999988877 79999987654
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=5.2e-27 Score=196.06 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=192.8
Q ss_pred EeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-CceeEee
Q 017773 59 TGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK-KVPIFER 137 (366)
Q Consensus 59 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~ 137 (366)
.++.|+.|++||+.+++... +..|...|.+++|+|+ +++|++++ ++.|.+||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------~~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------VWQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------EEEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred CCCcceeEEEEeCCCCceee--------------eccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCceEec
Confidence 34678999999987654321 2234567999999999 99999987 78999999999 8777666
Q ss_pred ecCCCCceeeEEeccCCCceEEEec--CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEE
Q 017773 138 DEHGGRRVWSVDYSKGDPVLGASGS--DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 138 ~~~~~~~v~~i~~~~~~~~l~~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 215 (366)
..+....+.+++|+|+++.+ ++++ .++...+|.+....++ ...+.. ...+..++|+|++..+++++..++.+.
T Consensus 80 ~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALY-AISDKVEFGKSAIYLLPSTGGT-PRLMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEE-EEEECTTTSSCEEEEEETTCCC-CEECCS---SSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred cccccccccceEECCCCCEE-EEEEeCCCCcceEEEEECCCCc-eEEeec---CCCccceEECCCCCEEEEEECCCCceE
Confidence 66654489999999999988 6655 3345666655422333 333332 225889999999954555888999999
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecC-CCceeeeeecccceeeeEEEEEecCCCeEE
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVN-DSRVIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
+|+++........+..+...+.+++|+ +++.++.++ .++.+++|++. .+..+..+..+...+..++|+ |++++|+
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~ 232 (297)
T 2ojh_A 155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS--PSGDKVV 232 (297)
T ss_dssp EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC--TTSSEEE
T ss_pred EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC--CCCCEEE
Confidence 999754434566677788899999999 888777666 58999999987 556677777777666666665 9999998
Q ss_pred EecCC-----------CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 293 CGSET-----------NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 293 ~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
+++.+ +.|.+||+.+++....... .+|...+..++|+| +++.|++++.|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~sp---dg~~l~~~~~~~ 293 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL------FGGQGTMNSPNWSP---DGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE------EESTTTSCSCCBCT---TSSEEEEEEECC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeecc------CCCCcccccceECC---CCCEEEEEEecc
Confidence 88765 5699999988776443322 24677899999999 888888877654
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.4e-25 Score=190.86 Aligned_cols=285 Identities=13% Similarity=0.104 Sum_probs=196.3
Q ss_pred EECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEE
Q 017773 49 EFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEY 126 (366)
Q Consensus 49 ~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw 126 (366)
.|.++++ .+++++.++.|++||..+++... ....+ ...+ .++|+|+ ++++++++ .++.|.+|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~----------~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILN---QITLG----------YDFV-DTAITSD--CSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEE---EEECC----------CCEE-EEEECSS--SCEEEEEESTTCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceee---eEEcc----------CCcc-eEEEcCC--CCEEEEEeCCCCeEEEE
Confidence 4555554 57778889999999998765533 22211 2345 9999999 88665554 48899999
Q ss_pred eCCCCce-eEeeecCCCCceeeEEeccCCCceEEEecCC-C--cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC
Q 017773 127 DLEKKVP-IFERDEHGGRRVWSVDYSKGDPVLGASGSDD-G--TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS 202 (366)
Q Consensus 127 ~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g--~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (366)
|+.+++. ...+..+.. +..+++|+|+++++ +++..+ + .|.+||+. +++.+..+... ..+.+++|+|+|.
T Consensus 68 d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l-~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~---~~~~~~~~spdg~ 140 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQS-SMADVDITPDDQFA-VTVTGLNHPFNMQSYSFL--KNKFISTIPIP---YDAVGIAISPNGN 140 (331)
T ss_dssp ECSSSSCEEEEEEECSS-CCCCEEECTTSSEE-EECCCSSSSCEEEEEETT--TTEEEEEEECC---TTEEEEEECTTSS
T ss_pred ECCCCceeEEecccCCC-CccceEECCCCCEE-EEecCCCCcccEEEEECC--CCCeEEEEECC---CCccceEECCCCC
Confidence 9999887 666666554 55559999999988 555555 3 89999998 77777776542 3679999999995
Q ss_pred cEEEEEecCCe-EEEEecCCCCCCe---eEeecccCcEEEEEEc-CCCEEE-EEeCCCcEEEEecCCCce---eeeeecc
Q 017773 203 SLVAAGCADKK-AYAYDVRKMVDPV---LVFDGHRKTVTYIRFL-DVDTLV-TAGTDGCLKLWNVNDSRV---IRTYKGH 273 (366)
Q Consensus 203 ~~l~~~~~d~~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~iwd~~~~~~---~~~~~~~ 273 (366)
.++++...++. |.+|++....... ............++|+ ++++++ ++..++.|.+||+.+++. +..+..+
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence 56666667688 9999998653221 1112334567899999 888554 455689999999999888 7777654
Q ss_pred cceeeeEEEEEecCCCeEEEe-cCCCeEEEEEeecCceEEEEeccccc-ccCCCCceeeEEEeeccCCCceEEEE-eCCC
Q 017773 274 VNNRNFVGLSVWRHGGLLGCG-SETNQVFVYDVRWGEPVWVHDFEPVT-AAGSERGFVSSVCWRRVGEDECTLVA-GGSD 350 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~s-~~~d 350 (366)
..+..++++ |+|++++.+ ..++.|.+||+.+++......+.... ...........++|+| |+++|+. +..+
T Consensus 221 -~~~~~~~~s--pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~v~~~~~ 294 (331)
T 3u4y_A 221 -NLPGTIVVS--RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK---TETKLFISANIS 294 (331)
T ss_dssp -SCCCCEEEC--TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT---TSSEEEEEETTT
T ss_pred -CCCceEEEC--CCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC---CCCEEEEecCCC
Confidence 344555655 999977655 45788999999988773322211100 0011112235689999 8877754 5557
Q ss_pred CcEEEEEecccC
Q 017773 351 GLLHVFVGKKKP 362 (366)
Q Consensus 351 g~i~iw~~~~~~ 362 (366)
+.|.+|++.++.
T Consensus 295 ~~v~v~d~~~~~ 306 (331)
T 3u4y_A 295 RELKVFTISGKV 306 (331)
T ss_dssp TEEEEEETTSCE
T ss_pred CcEEEEEecCCc
Confidence 799999997643
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=9.5e-26 Score=192.62 Aligned_cols=275 Identities=12% Similarity=0.116 Sum_probs=182.4
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC-CcEEEEeCC--CCc
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-GVVMEYDLE--KKV 132 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~ 132 (366)
++++++.++.|++|++......... . ...+...+.+++|+|+ +++|++++.+ +.|.+|++. +++
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-Q----------VVDVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-E----------EEECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-e----------eEecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCc
Confidence 4444477999999998642111111 1 1123456889999999 9988888776 999999997 454
Q ss_pred e--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC-CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe
Q 017773 133 P--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD-GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC 209 (366)
Q Consensus 133 ~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 209 (366)
. +..+..+. .+..++|+|+++.+++++..++.|.+||+... ..+....+. ....+.+++|+|++ +.+++++
T Consensus 74 ~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg-~~l~~~~ 147 (343)
T 1ri6_A 74 LTFAAESALPG--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDN-RTLWVPA 147 (343)
T ss_dssp EEEEEEEECSS--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTS-SEEEEEE
T ss_pred eeeccccccCC--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---CCCCceEEEECCCC-CEEEEec
Confidence 3 33444333 78899999999988666667899999999410 223344443 23368899999998 5555555
Q ss_pred -cCCeEEEEecCCCCCCee----Eeec-ccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCC--Cce--eeeee----cc
Q 017773 210 -ADKKAYAYDVRKMVDPVL----VFDG-HRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVND--SRV--IRTYK----GH 273 (366)
Q Consensus 210 -~d~~i~i~d~~~~~~~~~----~~~~-~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~--~~~--~~~~~----~~ 273 (366)
.++.|++||+.+..+... .... ....+..++|+ ++++++++ ..++.|.+||+.. ++. ...+. ++
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 899999999987323322 2222 33478889999 88866554 4889999999954 332 22222 11
Q ss_pred cceeeeEEEEEecCCCeEE-EecCCCeEEEEEee--cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC-C
Q 017773 274 VNNRNFVGLSVWRHGGLLG-CGSETNQVFVYDVR--WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG-S 349 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~ 349 (366)
........+.++|++++|+ ++..++.|.+||+. +++......+ ..+ ..+.+++|+| +|++|++++ .
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~-~~~~~~~~s~---dg~~l~~~~~~ 297 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ------PTE-TQPRGFNVDH---SGKYLIAAGQK 297 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE------ECS-SSCCCEEECT---TSSEEEEECTT
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee------cCC-CccceEEECC---CCCEEEEecCC
Confidence 1112223444559998777 55578999999998 3332221111 112 2388999999 888887777 6
Q ss_pred CCcEEEEEec
Q 017773 350 DGLLHVFVGK 359 (366)
Q Consensus 350 dg~i~iw~~~ 359 (366)
|+.|.+|+++
T Consensus 298 ~~~v~v~~~d 307 (343)
T 1ri6_A 298 SHHISVYEIV 307 (343)
T ss_dssp TCEEEEEEEE
T ss_pred CCeEEEEEEc
Confidence 8999999665
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=3.5e-25 Score=189.99 Aligned_cols=272 Identities=10% Similarity=-0.005 Sum_probs=205.7
Q ss_pred CCCceEEEEECCCCCEEEEeec-------CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGI-------ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRV 113 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 113 (366)
....+..++|+|+++++++++. ++.|.+||..+++... .... ...+..++|+|+ +++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~~-----------~~~~~~~~~s~d--g~~ 102 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ---AIHN-----------DLKPFGATINNT--TQT 102 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE---EEEE-----------SSCCCSEEEETT--TTE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE---EEec-----------CCCcceEEECCC--CCE
Confidence 3456889999999998888774 5689999998765433 1111 124678999999 874
Q ss_pred -EEEEcCCCcEEEEeCCCCceeEeeecCCCC--------ceeeEEeccCCCceEEEe-cCCCcEEEeeCCCCCCceeEee
Q 017773 114 -LGSGDYDGVVMEYDLEKKVPIFERDEHGGR--------RVWSVDYSKGDPVLGASG-SDDGTMQMWDPRCDGGKCVSTV 183 (366)
Q Consensus 114 -l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~-~~dg~v~~~d~~~~~~~~~~~~ 183 (366)
+++...++.|.+||+.+++.+..+..+... .+.+++|+|+++.++++. ..++.|.+||+. +++....+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~--~~~~~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG--NIKLKTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT--TTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC--CCceEEEe
Confidence 455566899999999999888877765431 278899999999885555 358899999998 77777777
Q ss_pred cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec----ccCcEEEEEEc-CCCEEEEEeC-CCcEE
Q 017773 184 QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG----HRKTVTYIRFL-DVDTLVTAGT-DGCLK 257 (366)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~-d~~i~ 257 (366)
... ...+.+++|+|++ ..+++++.++.|.+||+.++ +....+.. +...+..++|+ +++++++++. ++.|.
T Consensus 181 ~~~--~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 181 QNT--GKMSTGLALDSEG-KRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp CCC--CTTCCCCEEETTT-TEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred cCC--CCccceEEECCCC-CEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 622 2357889999998 67888888999999999887 45555543 45567889999 8887666554 58999
Q ss_pred EEecCCCceeeeeecccceeeeEEEEEecCCCeEEE-ecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 258 LWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC-GSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
+||..+++.+..+..... ..++++ |+++++++ ...++.|.+||+.+++.+..+.. ...+.+++|+|
T Consensus 257 ~~d~~~~~~~~~~~~~~~--~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~ 323 (353)
T 3vgz_A 257 VVDTRNGNILAKVAAPES--LAVLFN--PARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTHPNSLALSA 323 (353)
T ss_dssp EEETTTCCEEEEEECSSC--CCEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSEEEEEEECT
T ss_pred EEECCCCcEEEEEEcCCC--ceEEEC--CCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCCCCeEEEcC
Confidence 999999998888875432 345555 99996554 45789999999999988876642 34689999999
Q ss_pred cCCCceEEEEeCCC
Q 017773 337 VGEDECTLVAGGSD 350 (366)
Q Consensus 337 ~~~~~~~l~s~~~d 350 (366)
+|++|+.+..+
T Consensus 324 ---dg~~l~v~~~~ 334 (353)
T 3vgz_A 324 ---DGKTLYVSVKQ 334 (353)
T ss_dssp ---TSCEEEEEEEC
T ss_pred ---CCCEEEEEEcc
Confidence 88876666544
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.7e-26 Score=215.23 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=204.1
Q ss_pred CCceEEEEECCCCCEEEEeec-CC-----eEEEEEceecccccceeeeecCcee------------c--eeeeecCCcee
Q 017773 42 SDSIGVIEFDPSDSVFATGGI-AR-----KIRIYNIKSVLVDHPVVAVVDHSKV------------C--DYYICTPAKLS 101 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~v~ 101 (366)
...+.+++|||||++|++++. |+ .|++||+.+++... ....+... . .........+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 567999999999999999998 88 89999998765432 11111100 0 00000002478
Q ss_pred EEEEecCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 102 SLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
+++|+|+ |++|++++. +.|.+||+.++. ....+..+.. .+..++|+|+|+.+ +.++ ++.|++||+. +++.
T Consensus 113 ~~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~-~~~~~~~SPDG~~l-a~~~-~~~i~~~d~~--~g~~ 184 (741)
T 2ecf_A 113 DYQWSPD--AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG-FATDAKLSPKGGFV-SFIR-GRNLWVIDLA--SGRQ 184 (741)
T ss_dssp CCEECTT--SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS-CEEEEEECTTSSEE-EEEE-TTEEEEEETT--TTEE
T ss_pred eeEECCC--CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc-ccccccCCCCCCEE-EEEe-CCcEEEEecC--CCCE
Confidence 9999999 999999885 999999998873 3444555555 89999999999988 6655 4689999998 5554
Q ss_pred eEeecCCCCCC----------------CeEEEEEcCCCCcEEEEEecCC-------------------------------
Q 017773 180 VSTVQPSASRS----------------AVCCVEFHPFGSSLVAAGCADK------------------------------- 212 (366)
Q Consensus 180 ~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~d~------------------------------- 212 (366)
...... +.. .+..++|+|+| +.|++++.|+
T Consensus 185 ~~~~~~--~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 185 MQLTAD--GSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EECCCC--CCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEeccC--CccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 443321 111 14789999999 6677766554
Q ss_pred --eEEEEecCC-CCCCeeEee--cccCcEEEEEEcCCCEEEEEeC-----CCcEEEEecCCCceeeeeecccc----eee
Q 017773 213 --KAYAYDVRK-MVDPVLVFD--GHRKTVTYIRFLDVDTLVTAGT-----DGCLKLWNVNDSRVIRTYKGHVN----NRN 278 (366)
Q Consensus 213 --~i~i~d~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~----~~~ 278 (366)
.|++||+.+ + +...... .|...+..++|.+++.|++++. +..|++||+.+++....+..+.. .+.
T Consensus 262 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 262 QVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCC-ceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999987 6 4433332 4667888888866777776653 56799999999987776665542 223
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEee-cCceEEEEecccccccCCCCceeeEE-EeeccCCCceEEE-EeCCCC--cE
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVR-WGEPVWVHDFEPVTAAGSERGFVSSV-CWRRVGEDECTLV-AGGSDG--LL 353 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~l~-s~~~dg--~i 353 (366)
.++|+ |||+++++++.||.++||.++ +++ ...+ ..|...|..+ .|+| +++.|+ +++.|+ .+
T Consensus 341 ~~~~s--pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l--------~~~~~~v~~~~~~s~---dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 341 SLRFL--DDGSILWSSERTGFQHLYRIDSKGK-AAAL--------THGNWSVDELLAVDE---KAGLAYFRAGIESARES 406 (741)
T ss_dssp CCEEC--TTSCEEEEECTTSSCEEEEECSSSC-EEES--------CCSSSCEEEEEEEET---TTTEEEEEECSSCTTCB
T ss_pred ceEEC--CCCeEEEEecCCCccEEEEEcCCCC-eeee--------eecceEEEeEeEEeC---CCCEEEEEEeCCCCceE
Confidence 45555 999999999999988888876 344 3322 3456678787 5999 776664 555565 89
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
+||+++.
T Consensus 407 ~l~~~~~ 413 (741)
T 2ecf_A 407 QIYAVPL 413 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9999863
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6.1e-26 Score=213.73 Aligned_cols=280 Identities=11% Similarity=0.078 Sum_probs=199.8
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecc--cccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVL--VDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.|.+++|||||++|++++. +.|++||+.++. ... . +..|...+..++|+|+ |++|+.++ ++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~----------l~~~~~~~~~~~~SPD--G~~la~~~-~~ 172 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---Q----------LTHGEGFATDAKLSPK--GGFVSFIR-GR 172 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---B----------CCCSSSCEEEEEECTT--SSEEEEEE-TT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---E----------cccCCcccccccCCCC--CCEEEEEe-CC
Confidence 3789999999999999886 899999998762 111 1 2223457999999999 99999887 56
Q ss_pred cEEEEeCCCCceeEeeecCCCC---------------ceeeEEeccCCCceEEEecCCC---------------------
Q 017773 122 VVMEYDLEKKVPIFERDEHGGR---------------RVWSVDYSKGDPVLGASGSDDG--------------------- 165 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~---------------~v~~i~~~~~~~~l~~~~~~dg--------------------- 165 (366)
.|++||+.+++.......+... .+.+++|+|+|+.| ++++.|+
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE-EEEEEcCCCCceEecCCCCCCcccceEe
Confidence 8999999988765544433320 14789999999998 6655544
Q ss_pred ------------cEEEeeCCCCC-CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-----CCeEEEEecCCCCCCee
Q 017773 166 ------------TMQMWDPRCDG-GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-----DKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 166 ------------~v~~~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~ 227 (366)
.|.+||+. + ++.........+...+..++| |+| +.|++++. +..|++||+.++ +...
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~ 326 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPA--EQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN-QQRV 326 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSS--TTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC-CEEE
T ss_pred ecCCCCCCCCeeEEEEEECC--CCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC-ceEE
Confidence 78889988 5 554443322245668999999 999 56665443 568999999987 4555
Q ss_pred EeecccC----cEEEEEEc-CCCEEEEEeCCCcEEEEecC-CCceeeeeecccceeeeE-EEEEecCCCeEE-EecCCC-
Q 017773 228 VFDGHRK----TVTYIRFL-DVDTLVTAGTDGCLKLWNVN-DSRVIRTYKGHVNNRNFV-GLSVWRHGGLLG-CGSETN- 298 (366)
Q Consensus 228 ~~~~~~~----~v~~~~~~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~~dg- 298 (366)
.+..+.. .+..++|+ +++++++++.||.+++|.+. +++ ...+..+...+..+ .|+ |+++.|+ +++.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s--~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVD--EKAGLAYFRAGIESA 403 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEE--TTTTEEEEEECSSCT
T ss_pred EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEe--CCCCEEEEEEeCCCC
Confidence 5554443 44678999 88888999999988888765 345 67777776666544 355 9998775 555555
Q ss_pred -eEEEEEeec-CceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC----CcEEEEEeccc
Q 017773 299 -QVFVYDVRW-GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD----GLLHVFVGKKK 361 (366)
Q Consensus 299 -~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~ 361 (366)
.+++|++.. ++....+. . ...+..++|+| ||++|+....+ ..+.+|+..++
T Consensus 404 ~~~~l~~~~~~g~~~~~l~--------~-~~~~~~~~~sp---dg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 404 RESQIYAVPLQGGQPQRLS--------K-APGMHSASFAR---NASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TCBEEEEEETTCCCCEECC--------C-SCSEEEEEECT---TSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCCeeecc--------c-CCCceEEEECC---CCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 899999975 44333331 1 45678999999 88888766443 46888887553
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.5e-24 Score=183.77 Aligned_cols=290 Identities=13% Similarity=0.112 Sum_probs=191.7
Q ss_pred cccceeeeeecCC-CceeeecCCCCccCCCceEEEEECCCCCEEEEeecC-CeEEEEEce--ecccccceeeeecCceec
Q 017773 15 TNERARCEWDFNL-RTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIA-RKIRIYNIK--SVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 15 ~~~~~~~~w~~~~-~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~ 90 (366)
..+..+..|+.+. +.+.... ...|...+.+++|+|+|++|++++.+ +.|++|++. ++.... ...+..
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~----- 82 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQ---VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESAL----- 82 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEE---EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEC-----
T ss_pred CCCCeEEEEEECCCCcEEEee---eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-cccccc-----
Confidence 4577888998852 2221111 12367789999999999988888876 899999997 322111 111111
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCC---CCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLE---KKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT 166 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~ 166 (366)
...+..++|+|+ +++|++++ .++.|.+||+. ..+....+..+. .+.+++|+|+++.+++++..++.
T Consensus 83 ------~~~~~~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 83 ------PGSLTHISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD--GCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp ------SSCCSEEEECTT--SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT--TBCCCEECTTSSEEEEEEGGGTE
T ss_pred ------CCCCcEEEEcCC--CCEEEEEecCCCeEEEEECCCCccccccccccCCC--CceEEEECCCCCEEEEecCCCCE
Confidence 125889999999 88776655 58899999994 334444444433 68999999999988555558999
Q ss_pred EEEeeCCCCC-CceeE----eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CC--eeEeec---c---
Q 017773 167 MQMWDPRCDG-GKCVS----TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DP--VLVFDG---H--- 232 (366)
Q Consensus 167 v~~~d~~~~~-~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~~~---~--- 232 (366)
|.+||+. . ++... .... .....+..++|+|++..+++++..++.|.+||++... +. ...... .
T Consensus 153 v~~~d~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 153 ICLFTVS--DDGHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp EEEEEEC--TTSCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred EEEEEec--CCCceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 9999998 4 43322 2222 1234788999999994455566689999999996421 22 222221 1
Q ss_pred cCcEEEEEEc-CCCEEE-EEeCCCcEEEEecC----CCceeeeeecccceeeeEEEEEecCCCeEEEec-CCCeEEEEEe
Q 017773 233 RKTVTYIRFL-DVDTLV-TAGTDGCLKLWNVN----DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDV 305 (366)
Q Consensus 233 ~~~v~~~~~~-~~~~l~-~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 305 (366)
...+..++|+ ++++|+ ++..++.|.+||+. +.+.+..+..+.. +..++++ |++++|++++ .++.|.+|++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s--~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD--HSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC--TTSSEEEEECTTTCEEEEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC--CCCCEEEEecCCCCeEEEEEE
Confidence 2356689999 787776 45578999999998 2345555554443 5556665 9999888777 6899999977
Q ss_pred e--cCceEEEEecccccccCCCCceeeEEEeec
Q 017773 306 R--WGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 306 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
+ +++......++. .....+++|.|
T Consensus 307 d~~~g~~~~~~~~~~-------g~~p~~i~~~~ 332 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAV-------GQGPMWVVVNA 332 (343)
T ss_dssp ETTTTEEEEEEEEEC-------SSSCCEEEEEE
T ss_pred cCCCceeeEcccccc-------CCCCeeEEEEc
Confidence 6 454332222111 23466788877
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=4e-25 Score=188.28 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=190.3
Q ss_pred CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCC-ceeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCc
Q 017773 55 SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPA-KLSSLKWKPGTSGRVL-GSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 55 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~ 132 (366)
++|++++.++.|++||..+++... .+.... .. .+..++|+|+ ++.+ +++..++.|.+||+.+++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~---------~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK---VITIAD---------AGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE---EEECTT---------CTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE---EEEcCC---------CCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCC
Confidence 478999999999999998765432 111110 01 3778999999 8655 566678999999999998
Q ss_pred eeEeeecCC----CCceeeEEeccCCCceEEEec------------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 133 PIFERDEHG----GRRVWSVDYSKGDPVLGASGS------------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 133 ~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~------------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
.+..+.... ...+.+++|+|+++.+ +++. .++.|.+||+. +++....+... ..+.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~---~~~~~~~ 141 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSPDGKTL-AIYESPVRLELTHFEVQPTRVALYDAE--TLSRRKAFEAP---RQITMLA 141 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEETT--TTEEEEEEECC---SSCCCEE
T ss_pred eEeeEEcCCcccccccccceEECCCCCEE-EEEecccccccccccccCceEEEEECC--CCcEEEEEeCC---CCcceeE
Confidence 877665432 1146789999999888 5553 57999999998 67777766542 3678899
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc--CcEEEEEEc-CCCEEEEEeCC-C------------------
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFL-DVDTLVTAGTD-G------------------ 254 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d-~------------------ 254 (366)
|+|++ +.++++ ++.|++||+.++ +....+..+. .+ +.|+ ++..++..+.+ +
T Consensus 142 ~s~dg-~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 142 WARDG-SKLYGL--GRDLHVMDPEAG-TLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp ECTTS-SCEEEE--SSSEEEEETTTT-EEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred ECCCC-CEEEEe--CCeEEEEECCCC-cEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 99998 556665 689999999887 4555554333 22 2566 66655443322 2
Q ss_pred -----cEEEEecCCCcee-eeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 255 -----CLKLWNVNDSRVI-RTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 255 -----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
.|.+||+.+++.. ..+..+...+..++++ |++++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~ 281 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN--PAKTRAFGA--YNVLESFDLEKNASIKRVPL---------PHS 281 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC--TTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------SSC
T ss_pred cccccceEEEeCCCCCceEeecCCCCCceeeEEEC--CCCCEEEEe--CCeEEEEECCCCcCcceecC---------CCc
Confidence 4689999988764 2223333334445554 999999988 79999999999888776642 245
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+.+++|+| +|++|++++.++.|++||++++.
T Consensus 282 ~~~~~~s~---dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 282 YYSVNVST---DGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CCEEEECT---TSCEEEEESBSSEEEEEETTTCC
T ss_pred eeeEEECC---CCCEEEEEcCCCcEEEEECcCCc
Confidence 78999999 88899989999999999997754
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.7e-25 Score=185.61 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=187.8
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEcee-cccccceeeeecCceeceee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKS-VLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (366)
..+..+..|+..++...... .|...|.+++|+|+|++|++++ ++.|++||+.+ ++... ....+
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~-----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~~~~------- 82 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVW-----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VDTGF------- 82 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEE-----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CCCTT-------
T ss_pred CcceeEEEEeCCCCceeeec-----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---ecccc-------
Confidence 45678899999887765332 2788999999999999999986 78999999987 54322 11122
Q ss_pred eecCCceeEEEEecCCCCcEEEEEc--CCCcEEEE--eCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEE
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGD--YDGVVMEY--DLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iw--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
+...+.+++|+|+ +++|++++ .++...+| ++.+++ ...+..+. .+..++|+|+++.+++++..++.+++
T Consensus 83 --~~~~~~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 83 --ATICNNDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp --CCCBCSCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred --ccccccceEECCC--CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC--CccceEECCCCCEEEEEECCCCceEE
Confidence 1246889999999 99999988 33444554 555544 33343333 58899999999998668888999999
Q ss_pred eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE
Q 017773 170 WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV 248 (366)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 248 (366)
|++....++. ..+. .+...+.+++|+|++..+++++..++.+.+|+++........+..|...+..++|+ ++++|+
T Consensus 156 ~~~~~~~~~~-~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 156 YSMDIDSGVE-TRLT--HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp EEEETTTCCE-EECC--CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred EEEECCCCcc-eEcc--cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEE
Confidence 9975323333 3333 45568999999999943444454689999999874435677777788889999999 899988
Q ss_pred EEeCC-----------CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 249 TAGTD-----------GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 249 ~~~~d-----------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
+++.+ +.|.+||+.+++. +..+.+|...+..++|+ |++++|++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS--PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC--TTSSEEEEEEECC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC--CCCCEEEEEEecc
Confidence 88766 5699999988765 44444677777777766 9999998877653
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=4e-25 Score=215.06 Aligned_cols=321 Identities=12% Similarity=0.128 Sum_probs=227.5
Q ss_pred cccccceeeeeecCCCceeeecCC----C----------------CccCCCce-------EEEEECCCCCEEEEeecC--
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSS----P----------------NAAVSDSI-------GVIEFDPSDSVFATGGIA-- 63 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~----~----------------~~~h~~~i-------~~~~~s~~~~~l~t~~~d-- 63 (366)
.+........|++++..+++.... + ...|...+ .+++|+|||+++++++.+
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 344556667777777776655322 1 12377777 899999999977777754
Q ss_pred ----CeEEEEEceecccccce------ee-------------------------------eecCceeceeeeecCCceeE
Q 017773 64 ----RKIRIYNIKSVLVDHPV------VA-------------------------------VVDHSKVCDYYICTPAKLSS 102 (366)
Q Consensus 64 ----g~i~iw~~~~~~~~~~~------~~-------------------------------~~~~~~~~~~~~~~~~~v~~ 102 (366)
..|.+|++.++...... .. .... .....+.+|...+.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~ 208 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSS 208 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCcccc
Confidence 35777777654321100 00 0000 112234678889999
Q ss_pred EEEecCCCCcEEEEEcCCCcEEEEeCCC-CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeE
Q 017773 103 LKWKPGTSGRVLGSGDYDGVVMEYDLEK-KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 103 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~ 181 (366)
+.|+++ .++++++.++.+.+|.+.. +.....+..+. .+...+|+|+|+.+ +.+ .++.|++||+. ... +.
T Consensus 209 ~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~l-a~~-~~~~i~~~d~~--~~~-l~ 278 (1045)
T 1k32_A 209 PVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRI-LFS-KGGSIYIFNPD--TEK-IE 278 (1045)
T ss_dssp EEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCE-EEE-ETTEEEEECTT--TCC-EE
T ss_pred eEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEE-EEE-eCCEEEEecCC--ceE-ee
Confidence 999974 5677788889999997653 33444454444 46677999999988 555 48899999985 333 33
Q ss_pred eecCCC---------CCCCeEEEEEc-CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC-cEEEEEEcCCCEEEEE
Q 017773 182 TVQPSA---------SRSAVCCVEFH-PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK-TVTYIRFLDVDTLVTA 250 (366)
Q Consensus 182 ~~~~~~---------~~~~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~ 250 (366)
.+.... +...+.+++|+ |+| +.+++++ ++.+++|++..+ ....+..|.. .+..++|++++.|+++
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~sdg~~l~~~ 354 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGT--YVLKVPEPLRIRYVRRGGDTKVAFIHG 354 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSS--BEEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCC--ceEEccCCCcceEEeeeEcCCCeEEEE
Confidence 443211 23368999999 998 6777765 889999999875 3444666777 8899999866788888
Q ss_pred eCCCcEE-EEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCcee
Q 017773 251 GTDGCLK-LWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFV 329 (366)
Q Consensus 251 ~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 329 (366)
+.++.+. +||+.+++.. .+..|...+..++|+ |+|++|++++.++.|++||+.+++..... .+|...+
T Consensus 355 s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~S--pDG~~la~~~~~~~v~~~d~~tg~~~~~~--------~~~~~~v 423 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIE--------RSREAMI 423 (1045)
T ss_dssp ETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE--------ECSSSCC
T ss_pred ECCCceEEEEECCCCCce-EecCCccceeeeEEC--CCCCEEEEECCCCeEEEEECCCCceEEec--------cCCCCCc
Confidence 8888888 9998877654 444666666666665 99999999999999999999998876554 2477889
Q ss_pred eEEEeeccCCCceEEEEeCCCC----------cEEEEEecccC
Q 017773 330 SSVCWRRVGEDECTLVAGGSDG----------LLHVFVGKKKP 362 (366)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg----------~i~iw~~~~~~ 362 (366)
.+++|+| ||++|++++.++ .|++||+.++.
T Consensus 424 ~~~~~Sp---DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 424 TDFTISD---NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCEEECT---TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred cceEECC---CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999999 888998887654 89999987643
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=2.7e-25 Score=208.22 Aligned_cols=281 Identities=14% Similarity=0.057 Sum_probs=196.9
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
..|.+++|||| +.++.+. ++.|++||+.+++.. .+. .+...+.+++|+|+ |++|+++ .++.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~----~l~----------~~~~~~~~~~~Spd--G~~la~~-~~~~ 142 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT----YLF----------DTNEETASLDFSPV--GDRVAYV-RNHN 142 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE----EEE----------CCTTCCTTCEECTT--SSEEEEE-ETTE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE----Ecc----------CCcccccCCcCCCC--CCEEEEE-ECCe
Confidence 56999999999 6666553 699999999765432 111 22346888999999 9999885 5899
Q ss_pred EEEEeCCC-----CceeEeeecCCCC-------------ceeeEEeccCCCceEEEec----------------------
Q 017773 123 VMEYDLEK-----KVPIFERDEHGGR-------------RVWSVDYSKGDPVLGASGS---------------------- 162 (366)
Q Consensus 123 i~iw~~~~-----~~~~~~~~~~~~~-------------~v~~i~~~~~~~~l~~~~~---------------------- 162 (366)
|++|++.+ ++.......+... .+.++.|+|+|+.| ++++
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCL-AFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEE-EEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCceE
Confidence 99999998 7665544433320 15899999999998 5554
Q ss_pred -----------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC-----eEEEEecCCCCCCe
Q 017773 163 -----------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-----KAYAYDVRKMVDPV 226 (366)
Q Consensus 163 -----------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~ 226 (366)
.+..|++||+. +++.........+...+..++|+|+| +.|++++.++ .|++||+.++. ..
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~-~~ 297 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLA--TGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGR-FV 297 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETT--TTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCC-EE
T ss_pred EeeCCCCCCCCCeeEEEEEECC--CCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCc-ee
Confidence 44679999998 55554443333455689999999999 6777776665 89999998862 22
Q ss_pred eEee-c-ccC---cEEEEEEc---CCCEEEEEeCCCcEEEEecC-CCceeeeeecccceeee-EEEEEecCCCeEEEec-
Q 017773 227 LVFD-G-HRK---TVTYIRFL---DVDTLVTAGTDGCLKLWNVN-DSRVIRTYKGHVNNRNF-VGLSVWRHGGLLGCGS- 295 (366)
Q Consensus 227 ~~~~-~-~~~---~v~~~~~~---~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~- 295 (366)
..+. . +.. .+..+.|+ ++++++++..|+.+++|++. ++..+..+..+...+.. ++|+ |+++.|+.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~s--pdg~~l~~~~~ 375 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFD--PKGTRLYFEST 375 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEEC--TTSSEEEEEES
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEc--CCCCEEEEEec
Confidence 3222 1 222 23567886 56788888899999999886 66777778777655543 4555 9998776544
Q ss_pred CCC----eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC----CcEEEEEecccC
Q 017773 296 ETN----QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD----GLLHVFVGKKKP 362 (366)
Q Consensus 296 ~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~ 362 (366)
.++ .|..||+.+++.. .+ .|...+.+++|+| ||++|+..+.+ +.|++|+++++.
T Consensus 376 ~~~~~~~~l~~~d~~~~~~~-~l---------~~~~~~~~~~~sp---dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGKTK-DL---------TPESGMHRTQLSP---DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCTTCBEEEEEETTCCCCE-ES---------CCSSSEEEEEECT---TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCceEEEEEEEcCCCCce-ec---------cCCCceEEEEECC---CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 444 5666666655422 21 1456689999999 88888766443 569999987653
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.4e-25 Score=210.68 Aligned_cols=288 Identities=7% Similarity=0.003 Sum_probs=193.0
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC--
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-- 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-- 120 (366)
..+.+++|+|||+++++ +.||+|++||+.+++... .+..+.. +...|.+++|+|+ |++|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~-------~~~~v~~~~~SpD--g~~l~~~~~~~~ 83 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKI-------ESLRAIRYEISPD--REYALFSYNVEP 83 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTT-------TTTTCSEEEECTT--SSEEEEEESCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---Eeccccc-------cccccceEEECCC--CCEEEEEecCcc
Confidence 34788999999998876 689999999998876533 2222210 0014899999999 9999998764
Q ss_pred -------CcEEEEeCCCCceeEeeecCC--CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCC--
Q 017773 121 -------GVVMEYDLEKKVPIFERDEHG--GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASR-- 189 (366)
Q Consensus 121 -------g~i~iw~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~-- 189 (366)
+.+.+||+.+++. ..+.... ...+..++|+|+|+.+ +.++. +.|++||+. +++...........
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~l-a~~~~-~~i~~~~~~--~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQL-IFIFE-NNIYYCAHV--GKQAIRVVSTGKEGVI 158 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCE-EEEET-TEEEEESSS--SSCCEEEECCCBTTTE
T ss_pred ceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEE-EEEEC-CeEEEEECC--CCceEEEecCCCCCce
Confidence 7888999998875 3332221 1148899999999998 66654 799999998 55555544321110
Q ss_pred --------------CCeEEEEEcCCCCcEEEEEecCC----------------------------------eEEEEecCC
Q 017773 190 --------------SAVCCVEFHPFGSSLVAAGCADK----------------------------------KAYAYDVRK 221 (366)
Q Consensus 190 --------------~~i~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~ 221 (366)
..+.+++|+|+| +.|++++.++ .|++||+.+
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred ECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 123789999999 6777766442 799999988
Q ss_pred CCCCeeEeecc------cCcEEEEEEc-CCCEEEEEeC----CCcEEEEecCCCceeeeeecc-cceeee--EEEEEecC
Q 017773 222 MVDPVLVFDGH------RKTVTYIRFL-DVDTLVTAGT----DGCLKLWNVNDSRVIRTYKGH-VNNRNF--VGLSVWRH 287 (366)
Q Consensus 222 ~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~-~~~~~~--~~~~~~~~ 287 (366)
+ +....+..+ ...+..++|+ +++++++... +..|++||+.+++....+..+ ...+.. ....|+||
T Consensus 238 ~-~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 238 P-THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp S-CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred C-ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence 6 334445443 5678999999 8888866653 357999999998876665433 222321 13344599
Q ss_pred CCeEEE--ecCCC------eEEEEE-eecCce--EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC---CcE
Q 017773 288 GGLLGC--GSETN------QVFVYD-VRWGEP--VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD---GLL 353 (366)
Q Consensus 288 ~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i 353 (366)
|+.|+. +..++ .|.+|| ...++. ...+. .++......++|+| ||+.|+..+.+ +.+
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-------~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-------SGDWDVTKILAYDE---KGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-------CSSSCEEEEEEEET---TTTEEEEEESSSCTTCC
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-------cCCeEEEeeeEEcC---CCCEEEEEEcCCCCcce
Confidence 997774 45666 466666 333331 22211 22223333479999 88888765544 789
Q ss_pred EEEEecc
Q 017773 354 HVFVGKK 360 (366)
Q Consensus 354 ~iw~~~~ 360 (366)
+||+++.
T Consensus 387 ~l~~~~~ 393 (723)
T 1xfd_A 387 QLYSANT 393 (723)
T ss_dssp EEEEECS
T ss_pred EEEEEeC
Confidence 9999853
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=6.9e-24 Score=180.32 Aligned_cols=270 Identities=9% Similarity=0.015 Sum_probs=191.7
Q ss_pred ccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeec-CCeEEEEEceecccccceeeeecCceec
Q 017773 12 AETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGI-ARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 12 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.....+..+..|+..++.+...... +...+ .++|+|+|+++++++. ++.|.+||..+++.. ......
T Consensus 14 v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~----- 81 (331)
T 3u4y_A 14 VVEQHLRRISFFSTDTLEILNQITL----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VVAIQE----- 81 (331)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEEC----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EEEEEE-----
T ss_pred EEecCCCeEEEEeCcccceeeeEEc----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EEeccc-----
Confidence 3445677889999998877655432 35556 9999999997666655 889999999876541 112222
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc-
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDG---VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT- 166 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~- 166 (366)
+..+..+++|+|+ +++++++..++ .|.+||+.+++.+..+..+. ...+++|+|++++++++...++.
T Consensus 82 -----~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 82 -----GQSSMADVDITPD--DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp -----CSSCCCCEEECTT--SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTE
T ss_pred -----CCCCccceEECCC--CCEEEEecCCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCce
Confidence 2234555999999 99998655553 89999999998888776654 57899999999988677777788
Q ss_pred EEEeeCCCCCCcee----EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeecccCcEEEE
Q 017773 167 MQMWDPRCDGGKCV----STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDGHRKTVTYI 239 (366)
Q Consensus 167 v~~~d~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~ 239 (366)
+.+|++.. .+... ..+ .....+..++|+|+|+.+++++..++.|++||++++ +. +..+.. ...+..+
T Consensus 153 i~~~~~~~-~g~~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 153 VRRFKIDA-DGVLFDTGQEFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp EEEEEECT-TCCEEEEEEEEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEEC-SSCCCCE
T ss_pred EEEEEECC-CCcEeecCCccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccC-CCCCceE
Confidence 99999982 22221 222 223368999999999546666667899999999887 45 555554 3567889
Q ss_pred EEc-CCCEEEEE-eCCCcEEEEecCCCce--eeeeecc----ccee---eeEEEEEecCCCeEEE-ecCCCeEEEEEeec
Q 017773 240 RFL-DVDTLVTA-GTDGCLKLWNVNDSRV--IRTYKGH----VNNR---NFVGLSVWRHGGLLGC-GSETNQVFVYDVRW 307 (366)
Q Consensus 240 ~~~-~~~~l~~~-~~d~~i~iwd~~~~~~--~~~~~~~----~~~~---~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 307 (366)
+|+ ++++++.+ ..++.|.+||+.+++. +..+..+ .... ..++|+ |++++|++ +..++.|.+||+..
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN--KTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC--TTSSEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC--CCCCEEEEecCCCCcEEEEEecC
Confidence 999 88866555 4578899999998876 4443322 2221 224555 99998765 45567999999976
Q ss_pred Cce
Q 017773 308 GEP 310 (366)
Q Consensus 308 ~~~ 310 (366)
...
T Consensus 305 ~~~ 307 (331)
T 3u4y_A 305 KVV 307 (331)
T ss_dssp CEE
T ss_pred Ccc
Confidence 543
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=1.6e-24 Score=198.34 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=195.1
Q ss_pred CCCceEEEEECCCCCEEEEeec-CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGI-ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+..+|++++|+|||++||+++. ||+++||++++++.. .+..+. ...+..++|+|+ +++++++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~---------~~~~~~~~~spd---~~l~~~~~ 83 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREP---------INSVLDPHYGVG---RVILVRDV 83 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSC---------CSEECEECTTCS---EEEEEEEC
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeeccc---------ccccccccCCCC---eEEEEecc
Confidence 3557999999999999999887 999999998554321 122221 146899999985 56666654
Q ss_pred ---CCcEEEEeCCC--CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 120 ---DGVVMEYDLEK--KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 120 ---dg~i~iw~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
+....+|.+.. ......+.... .+...+|+|+++.++++...++.+.+||+. +++....... + . .+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~--~g~~~~l~~~--~--~-~~ 154 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQRLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALD--GGGLRELARL--P--G-FG 154 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCEECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEE--TTEEEEEEEE--S--S-CE
T ss_pred CCCCcceEEEEEeccCCCccccccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEcc--CCcEEEeecC--C--C-ce
Confidence 45556654432 21122333333 445678899987655555556666799998 5655444431 1 1 78
Q ss_pred EEEcCCCCcEEEEEecC----CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC--cEEEEecCCCcee
Q 017773 195 VEFHPFGSSLVAAGCAD----KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG--CLKLWNVNDSRVI 267 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~ 267 (366)
++|+|+| +.+++++.+ +.|++||+.++ + ...+..|...+..++|+ +|+.|+++..++ .|++||+.+++..
T Consensus 155 ~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 155 FVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEET-TEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EEECCCC-CEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9999999 788877666 78999999886 3 44677888899999999 999999888888 8999999998877
Q ss_pred eeeecccceeeeEE------EEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCc
Q 017773 268 RTYKGHVNNRNFVG------LSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 268 ~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
.+..|...+..+. ..|+|||.++++++.|+.+++|++ ++... ...+.|.+++|+ ++
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----------~~~~~v~~~~~s----dg 293 (582)
T 3o4h_A 232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----------APQGNHGRVVLW----RG 293 (582)
T ss_dssp -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----------CCSSEEEEEEEE----TT
T ss_pred -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----------cCCCceEEEEec----CC
Confidence 7777766555444 114499999999999999999999 65442 124678899998 55
Q ss_pred eEEEEeCCCCc---EEEEEecc
Q 017773 342 CTLVAGGSDGL---LHVFVGKK 360 (366)
Q Consensus 342 ~~l~s~~~dg~---i~iw~~~~ 360 (366)
+++++++.+.. +.+|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 68888777744 66666543
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.5e-23 Score=177.13 Aligned_cols=277 Identities=11% Similarity=-0.000 Sum_probs=199.0
Q ss_pred cccccceeeeeecCCCceeeecCCCCccCCC-ceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 13 ETTNERARCEWDFNLRTTVSSSSSPNAAVSD-SIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~-~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
....+..+..|+..++.++.....+ +.. .+..++|+|+|+++ +++..++.|.+||+.+++... .+.....
T Consensus 6 ~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~-- 77 (337)
T 1pby_B 6 APARPDKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG---RIDLSTP-- 77 (337)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE---EEECCBT--
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcC---CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe---eEEcCCc--
Confidence 3445778889999888776544321 221 47889999999765 555667899999998765432 1111100
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEc------------CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceE
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGD------------YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLG 158 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 158 (366)
..+...+.+++|+|+ +++|+++. .++.|.+||+.+++....+.... .+.+++|+|+++.+
T Consensus 78 ---~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l- 149 (337)
T 1pby_B 78 ---EERVKSLFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKL- 149 (337)
T ss_dssp ---TEEEECTTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCE-
T ss_pred ---ccccccccceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--CcceeEECCCCCEE-
Confidence 001124678999999 98888885 57999999999988777776533 68899999999988
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC-----------------------eEE
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-----------------------KAY 215 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----------------------~i~ 215 (366)
+++ ++.|.+||+. +++....+.......++ .|+|++..+++++..++ .|.
T Consensus 150 ~~~--~~~i~~~d~~--~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 150 YGL--GRDLHVMDPE--AGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEE--SSSEEEEETT--TTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEe--CCeEEEEECC--CCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 554 6889999998 77777766643322233 78998844444333333 468
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
+||+.+.......+..+...+..++|+ ++++++++ ++.|.+||+.+++.+..+..+. .+..++++ |++++|+++
T Consensus 223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~~ 297 (337)
T 1pby_B 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH-SYYSVNVS--TDGSTVWLG 297 (337)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEEC--TTSCEEEEE
T ss_pred EEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC-ceeeEEEC--CCCCEEEEE
Confidence 999988732233344566678899999 88888887 7999999999998888776543 34555555 999999999
Q ss_pred cCCCeEEEEEeecCceEEEEecc
Q 017773 295 SETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+.++.|.+||+.+++.+..+..+
T Consensus 298 ~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEECG
T ss_pred cCCCcEEEEECcCCcEEEEEEcC
Confidence 99999999999999988777543
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1e-22 Score=178.74 Aligned_cols=211 Identities=17% Similarity=0.216 Sum_probs=152.2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccce----eeeecCceeceeeeecCCceeEEEEecCCCCcEEE-
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPV----VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG- 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~- 115 (366)
+...++.+++++++.++++++.++ +++|+.......... ....... ......+...|.+++|+|+ +++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~spd--g~~lav 109 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV--QGLLVPMKFPIHHLALSCD--NLTLSA 109 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC--CCEEECCSSCEEEEEECTT--SCEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC--ccccccCCCcccEEEEcCC--CCEEEE
Confidence 355689999999999999999887 999987543211000 0000000 0112345678999999999 99999
Q ss_pred ---EEcCCCcEEEEeCCCC--------ce---eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeE
Q 017773 116 ---SGDYDGVVMEYDLEKK--------VP---IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 116 ---~~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~ 181 (366)
+|+.|+.|++||+.++ +. ...+.+|.. .|.+++|+|++..++++++.||+|++||++ ++....
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~las~s~Dg~v~iwD~~--~~~~~~ 186 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG-MVIDMKWNPTVPSMVAVCLADGSIAVLQVT--ETVKVC 186 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG-SEEEEEECSSCTTEEEEEETTSCEEEEEES--SSEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCC-ceEEEEECCCCCCEEEEEECCCeEEEEEcC--CCccee
Confidence 7889999999998654 22 334455665 899999999855556999999999999999 554444
Q ss_pred eecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc-------cCcEEEEEEc-CCCEEEE-EeC
Q 017773 182 TVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH-------RKTVTYIRFL-DVDTLVT-AGT 252 (366)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~-~~~~l~~-~~~ 252 (366)
... +|...|.+++|+|+| .+|++|+.||.|++||++ + +....+..| ...+.+++|+ ++.++++ +..
T Consensus 187 ~~~--~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 187 ATL--PSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEE--CGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred ecc--CCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 333 466799999999998 899999999999999998 3 344444333 3378999998 5555543 334
Q ss_pred CC------cEEEEecCCC
Q 017773 253 DG------CLKLWNVNDS 264 (366)
Q Consensus 253 d~------~i~iwd~~~~ 264 (366)
|| .+++|++++.
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 43 3899999865
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=4e-23 Score=177.09 Aligned_cols=242 Identities=13% Similarity=0.053 Sum_probs=187.2
Q ss_pred CceeEEEEecCCCCcEEEEEcC-------CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEe
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDY-------DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMW 170 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~ 170 (366)
..+..++|+|+ ++++++++. ++.|.+||..+++.+..+.... .+..++|+|+++.++++...++.|.+|
T Consensus 41 ~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQ--ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETT--TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCC--CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCCCEEEEE
Confidence 35789999999 888877764 5689999999998888776544 578999999999887788888999999
Q ss_pred eCCCCCCceeEeecCCCCC-------CCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCeeEeecccCcEEEEEE
Q 017773 171 DPRCDGGKCVSTVQPSASR-------SAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRF 241 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 241 (366)
|.. +++.+..+...... ..+.+++|+|++ ..+++++ .++.|.+||.++. +....+..+...+..++|
T Consensus 117 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 117 DAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp ETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEE
T ss_pred eCC--CCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEE
Confidence 998 77777777653221 127899999998 4454444 5789999999887 566666645566788999
Q ss_pred c-CCCEEEEEeCCCcEEEEecCCCceeeeeec----ccceeeeEEEEEecCCCeEEEec-CCCeEEEEEeecCceEEEEe
Q 017773 242 L-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG----HVNNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 242 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 315 (366)
+ +++++++++.++.|.+||..+++.+..+.. +...+..++++ |+++++++++ .++.|.+||+.+++.+..+.
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLD--TARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE--TTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9 889999999999999999999988877764 23333445555 9999776655 45999999999999887765
Q ss_pred cccccccCCCCceeeEEEeeccCCCceEE-EEeCCCCcEEEEEecccC
Q 017773 316 FEPVTAAGSERGFVSSVCWRRVGEDECTL-VAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~ 362 (366)
.. . ...++|+| +++++ ++...++.|.+||..++.
T Consensus 271 ~~-------~---~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 271 AP-------E---SLAVLFNP---ARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp CS-------S---CCCEEEET---TTTEEEEEETTTTEEEEEETTTTE
T ss_pred cC-------C---CceEEECC---CCCEEEEEECCCCeEEEEECCCCe
Confidence 32 1 25799999 77754 555579999999987644
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=5.9e-23 Score=175.77 Aligned_cols=273 Identities=11% Similarity=0.094 Sum_probs=180.1
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeec---CCeEEEEEceecccccceeeeecCceeceee
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGI---ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
.+.++.|+..++.+..... ..+...+..++|+|+|+ |++++. ++.|.+|++.++.... ... +
T Consensus 17 ~i~v~~~d~~tg~~~~~~~---~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-~~~----------~ 81 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGL---LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-LNT----------V 81 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE---EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-EEE----------E
T ss_pred CEEEEEEcCCCCeEEEeee---eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-eee----------e
Confidence 4556666766665533111 12456678899999999 555544 5899999996543211 111 1
Q ss_pred eecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCC-Cc--eeEeeecCC--------CCceeeEEeccCCCceEEEe
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEK-KV--PIFERDEHG--------GRRVWSVDYSKGDPVLGASG 161 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~--~~~~~~~~~--------~~~v~~i~~~~~~~~l~~~~ 161 (366)
..+...+..++|+|+ +++|++++ .++.|.+|++.. +. .+..+.... ...+.+++|+|+++ ++++.
T Consensus 82 ~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~ 158 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEA--RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVID 158 (347)
T ss_dssp EEESCCCSEEEEETT--TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEE
T ss_pred ecCCCCCEEEEECCC--CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEe
Confidence 223456889999999 99888777 679999999963 22 223332211 11488899999999 66787
Q ss_pred cCCCcEEEeeCCCCCCcee--EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC-CC--eeEeeccc---
Q 017773 162 SDDGTMQMWDPRCDGGKCV--STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV-DP--VLVFDGHR--- 233 (366)
Q Consensus 162 ~~dg~v~~~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~~~~~--- 233 (366)
..++.|.+||+.. .++.. ..+.. .....+..++|+|+|..+++++..++.|.+|+++... +. ...+....
T Consensus 159 ~~~~~v~~~~~~~-~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 159 LGSDKVYVYNVSD-AGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp TTTTEEEEEEECT-TSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECC-CCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence 7889999999982 23222 22222 1223678899999994456666788999999987521 21 22222222
Q ss_pred ---CcEEEEEEc-CCCEE-EEEeCCCcEEEEecCC---CceeeeeecccceeeeEEEEEecCCCeEEEecC-CCeEEEEE
Q 017773 234 ---KTVTYIRFL-DVDTL-VTAGTDGCLKLWNVND---SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE-TNQVFVYD 304 (366)
Q Consensus 234 ---~~v~~~~~~-~~~~l-~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd 304 (366)
..+..++|+ ++++| ++...++.|.+|++.. .+.+..+..+...+..++|+ |+|++|++++. ++.|.+|+
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s--pdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD--PTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC--TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC--CCCCEEEEEEcCCCcEEEEE
Confidence 348889999 88877 5556689999999973 24555565555455566665 99998887765 58999996
Q ss_pred ee--cCceE
Q 017773 305 VR--WGEPV 311 (366)
Q Consensus 305 ~~--~~~~~ 311 (366)
++ +++..
T Consensus 315 ~d~~tg~l~ 323 (347)
T 3hfq_A 315 RDLTSGKLS 323 (347)
T ss_dssp ECTTTCCEE
T ss_pred EeCCCCeEE
Confidence 64 55554
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.1e-23 Score=204.87 Aligned_cols=277 Identities=12% Similarity=0.048 Sum_probs=212.3
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
.|...+.++.|+++ .++++++.++.++||.+....... ..+..+ ..+...+|+|+ |+.|+.+.
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~--~~l~~~-----------~~~~~~~~SpD--G~~la~~~- 263 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL--RKHTSF-----------TDYYPRHLNTD--GRRILFSK- 263 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC--EECCCC-----------CSSCEEEEEES--SSCEEEEE-
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc--eEecCC-----------CCcceeeEcCC--CCEEEEEe-
Confidence 47889999999998 677788888999999876422111 122222 13667799999 99888874
Q ss_pred CCcEEEEeCCCCceeEeeecCC----------CCceeeEEec-cCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCC
Q 017773 120 DGVVMEYDLEKKVPIFERDEHG----------GRRVWSVDYS-KGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSAS 188 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~----------~~~v~~i~~~-~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~ 188 (366)
++.|.+|++...+ +..+..+. ...+.+++|+ |+++.+ ++++ ++.+.+|++. .++... +. .+
T Consensus 264 ~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l-a~~~-~~~i~~~~~~--~~~~~~-~~--~~ 335 (1045)
T 1k32_A 264 GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI-AFVS-RGQAFIQDVS--GTYVLK-VP--EP 335 (1045)
T ss_dssp TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE-EEEE-TTEEEEECTT--SSBEEE-CS--CC
T ss_pred CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEE-EEEE-cCEEEEEcCC--CCceEE-cc--CC
Confidence 8999999995443 33444321 1268899999 999988 5555 7899999988 444333 32 45
Q ss_pred CC-CeEEEEEcCCCCcEEEEEecCCeEE-EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc
Q 017773 189 RS-AVCCVEFHPFGSSLVAAGCADKKAY-AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 189 ~~-~i~~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
.. .+..++|+ +| ..++.++.++.+. +||+.+. ....+..|...+..++|+ ++++|++++.++.|++||+.+++
T Consensus 336 ~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~--~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 336 LRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp SCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCC--CceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 55 78999999 88 7788877788888 9998875 334444788899999999 99999999999999999999998
Q ss_pred eeeeeecccceeeeEEEEEecCCCeEEEecCC----------CeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 266 VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET----------NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
....+..|...+..++|+ |||++|++++.+ +.|++||+.+++ ...+ ..|...+..++|+
T Consensus 412 ~~~~~~~~~~~v~~~~~S--pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l--------~~~~~~~~~~~~s 480 (1045)
T 1k32_A 412 PTVIERSREAMITDFTIS--DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA--------TTENSHDYAPAFD 480 (1045)
T ss_dssp EEEEEECSSSCCCCEEEC--TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC--------SCSSSBEEEEEEC
T ss_pred eEEeccCCCCCccceEEC--CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe--------eCCCcccCCceEc
Confidence 887777888777777766 999999887664 489999998876 3222 3467778899999
Q ss_pred ccCCCceEEEEeCCCCcEEEEEec
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
| ||++|++++.++...+|+..
T Consensus 481 p---dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 481 A---DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp T---TSCEEEEEESCCCCCEECSS
T ss_pred C---CCCEEEEEecccCCcCcchh
Confidence 9 88899999988888888653
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.7e-23 Score=196.51 Aligned_cols=301 Identities=11% Similarity=-0.034 Sum_probs=197.5
Q ss_pred cccceeeeeecCCCceeeecCCCCccCCC---ceEEEEECCCCCEEEEeecC---------CeEEEEEceecccccceee
Q 017773 15 TNERARCEWDFNLRTTVSSSSSPNAAVSD---SIGVIEFDPSDSVFATGGIA---------RKIRIYNIKSVLVDHPVVA 82 (366)
Q Consensus 15 ~~~~~~~~w~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~ 82 (366)
..+..+..|+..++........ |.. .|.+++|||||++||+++.+ +.+.+||+.+++.. .
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~----~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~ 105 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEG----KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ----S 105 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECT----TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE----E
T ss_pred eCCCCEEEEECCCCcEEEEecc----ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE----e
Confidence 4556778888877655433321 332 49999999999999998764 78889999876541 1
Q ss_pred eecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCC-----------------ce
Q 017773 83 VVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGR-----------------RV 145 (366)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------------~v 145 (366)
+... ..|...+..++|+|+ |+.|+.++. +.|++||+.+++.......+... .+
T Consensus 106 l~~~-------~~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 106 LDPP-------EVSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp CCCT-------TCCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ccCC-------ccccccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 1111 122345888999999 999998885 79999999988776655443320 23
Q ss_pred eeEEeccCCCceEEEecCCC----------------------------------cEEEeeCCCCCCceeEeecCC----C
Q 017773 146 WSVDYSKGDPVLGASGSDDG----------------------------------TMQMWDPRCDGGKCVSTVQPS----A 187 (366)
Q Consensus 146 ~~i~~~~~~~~l~~~~~~dg----------------------------------~v~~~d~~~~~~~~~~~~~~~----~ 187 (366)
.+++|+|+|+.| ++++.++ .|++||+. +++....+... .
T Consensus 176 ~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~--~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 176 IAHWWSPDGTRL-AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN--GPTHDLEMMPPDDPRM 252 (723)
T ss_dssp EEEEECTTSSEE-EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS--SSCCCEECCCCCCGGG
T ss_pred ceEEECCCCCEE-EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC--CCceeEEeeCCccCCC
Confidence 789999999988 5554332 78999998 55544444422 1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEec----CCeEEEEecCCCCCCeeEeec-ccCcEE----EEEEc-CCCEEEE--EeCCC-
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCA----DKKAYAYDVRKMVDPVLVFDG-HRKTVT----YIRFL-DVDTLVT--AGTDG- 254 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~v~----~~~~~-~~~~l~~--~~~d~- 254 (366)
+...+..++|+|+| +++++... +..|++||+.++ +....+.. +...+. .++|+ +++.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 253 REYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp SSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred ccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 24578999999999 67766543 357999999887 44444433 334333 78999 8886664 45666
Q ss_pred -----cEEEEec-CCCc--eeeeeecccceee-eEEEEEecCCCeEEEecCC---CeEEEEEeecCc--eEEEEeccccc
Q 017773 255 -----CLKLWNV-NDSR--VIRTYKGHVNNRN-FVGLSVWRHGGLLGCGSET---NQVFVYDVRWGE--PVWVHDFEPVT 320 (366)
Q Consensus 255 -----~i~iwd~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~~~~~ 320 (366)
.|.+||. ..++ ....+..+...+. .++|+ |+|+.|+..+.+ +.+++|++.... ....+. .
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~--~-- 404 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD--EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS--C-- 404 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE--TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS--T--
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc--CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec--c--
Confidence 5777773 4443 1455553333332 23454 999998765444 789999987532 111110 0
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
...|...+..++|+| ||++|+...
T Consensus 405 -~~~~~~~~~~~~~sp---dg~~l~~~~ 428 (723)
T 1xfd_A 405 -DLVENCTYFSASFSH---SMDFFLLKC 428 (723)
T ss_dssp -TSSSSCCCCEEEECT---TSSEEEEEC
T ss_pred -cccCCCCeEEEEECC---CCCEEEEEc
Confidence 011566788999999 887777643
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1.2e-22 Score=173.84 Aligned_cols=271 Identities=14% Similarity=0.120 Sum_probs=174.2
Q ss_pred cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCc--eeEe
Q 017773 62 IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY---DGVVMEYDLEKKV--PIFE 136 (366)
Q Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~--~~~~ 136 (366)
.++.|.+|.++........... ..+...+..++|+|+ |+ |++++. ++.|.+|++.+++ .+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~----------~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGL----------LAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEE----------EEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeee----------eeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcEEEeee
Confidence 3567888888653221111111 112245788999999 88 554443 6899999997765 3333
Q ss_pred eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc--eeEeecCCC-------CCCCeEEEEEcCCCCcEEEE
Q 017773 137 RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK--CVSTVQPSA-------SRSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 137 ~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~ 207 (366)
+..+.. .+..++|+|+++.++++...++.+.+|++.. .+. .+..+...+ ....+.+++|+|+|. ++++
T Consensus 81 ~~~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~ 157 (347)
T 3hfq_A 81 VVAPGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI 157 (347)
T ss_dssp EEEESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred eecCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence 334444 7889999999998855555789999999962 222 233332211 122488999999995 7777
Q ss_pred EecCCeEEEEecCCCCCCee--Eeecc-cCcEEEEEEc-CCCEEEE-EeCCCcEEEEecCC--Cce--eeeeeccc----
Q 017773 208 GCADKKAYAYDVRKMVDPVL--VFDGH-RKTVTYIRFL-DVDTLVT-AGTDGCLKLWNVND--SRV--IRTYKGHV---- 274 (366)
Q Consensus 208 ~~~d~~i~i~d~~~~~~~~~--~~~~~-~~~v~~~~~~-~~~~l~~-~~~d~~i~iwd~~~--~~~--~~~~~~~~---- 274 (366)
...++.|++||+....+... .+..+ ......++|+ +++++++ ...++.|.+|++.. ++. +..+....
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 77789999999984323221 12222 2357789999 8886555 56788999999874 432 22333222
Q ss_pred --ceeeeEEEEEecCCCeE-EEecCCCeEEEEEeecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC-
Q 017773 275 --NNRNFVGLSVWRHGGLL-GCGSETNQVFVYDVRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS- 349 (366)
Q Consensus 275 --~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~- 349 (366)
..+..+++ +|+|++| ++...++.|.+|++... +......+ ..+...+.+++|+| ||++|++++.
T Consensus 238 ~~~~~~~i~~--spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------~~~~~~~~~~~~sp---dg~~l~v~~~~ 306 (347)
T 3hfq_A 238 AHNGAAAIRL--SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI------STEGDFPRDFDLDP---TEAFVVVVNQN 306 (347)
T ss_dssp SCCEEEEEEE--CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE------ECSSSCCCEEEECT---TSSEEEEEETT
T ss_pred CCCcceeEEE--CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE------ecCCCCcCeEEECC---CCCEEEEEEcC
Confidence 22344454 4999987 45566899999999733 22211111 22345688999999 8888877765
Q ss_pred CCcEEEEEec
Q 017773 350 DGLLHVFVGK 359 (366)
Q Consensus 350 dg~i~iw~~~ 359 (366)
++.|.+|+++
T Consensus 307 ~~~v~v~~~d 316 (347)
T 3hfq_A 307 TDNATLYARD 316 (347)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEEe
Confidence 5899999654
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=4.4e-23 Score=193.18 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=187.2
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccc-cceeeeecCceec-------eeeeecCCceeEEEEecCCCCcEEE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVD-HPVVAVVDHSKVC-------DYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
.+..+.|. |+.+++++.++ | +||+.+++.. . .+..+.... .....+...|.+++|+|+ +.+++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVL 97 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT--TEEEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC--CeEEE
Confidence 35557777 55666667777 8 9999887652 2 112211100 000111246999999998 76666
Q ss_pred EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC-----CceeEeecCCCCC-
Q 017773 116 SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG-----GKCVSTVQPSASR- 189 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~~~- 189 (366)
+. ++.|++||+.+++.... ..+.. .+.+++|+|+|+.+ +++ .++.|++||+. + ++....... ...
T Consensus 98 ~~--~~~i~~~d~~~~~~~~l-~~~~~-~~~~~~~SpdG~~l-a~~-~~~~i~v~~~~--~~~~~~g~~~~~~~~-~~~~ 168 (706)
T 2z3z_A 98 FT--QGGLVGFDMLARKVTYL-FDTNE-ETASLDFSPVGDRV-AYV-RNHNLYIARGG--KLGEGMSRAIAVTID-GTET 168 (706)
T ss_dssp EE--TTEEEEEETTTTEEEEE-ECCTT-CCTTCEECTTSSEE-EEE-ETTEEEEEECB--CTTSCCCCCEESCSC-CBTT
T ss_pred EE--CCEEEEEECCCCceEEc-cCCcc-cccCCcCCCCCCEE-EEE-ECCeEEEEecC--cccccCCCcEEeccC-CCCC
Confidence 64 59999999988865443 33444 78999999999988 554 57999999998 5 554443321 111
Q ss_pred ------------CCeEEEEEcCCCCcEEEEEe---------------------------------cCCeEEEEecCCCCC
Q 017773 190 ------------SAVCCVEFHPFGSSLVAAGC---------------------------------ADKKAYAYDVRKMVD 224 (366)
Q Consensus 190 ------------~~i~~~~~~~~~~~~l~~~~---------------------------------~d~~i~i~d~~~~~~ 224 (366)
..+.+++|+|+| +.|++++ .+..|++||+.++ +
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~ 246 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-K 246 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-E
T ss_pred eEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-c
Confidence 125889999999 6777776 4467999999876 3
Q ss_pred CeeEe--ecccCcEEEEEEc-CCCEEEEEeCCC-----cEEEEecCCCceeeeeec--ccce---eeeEEEEEec--CCC
Q 017773 225 PVLVF--DGHRKTVTYIRFL-DVDTLVTAGTDG-----CLKLWNVNDSRVIRTYKG--HVNN---RNFVGLSVWR--HGG 289 (366)
Q Consensus 225 ~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~--~~~ 289 (366)
..... ..|...+..++|+ +++.|++++.++ .|.+||+.+++....+.. +... +..++|+ | +|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s--p~~dg~ 324 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL--PGSNNQ 324 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC--TTCSSE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee--cCCCCE
Confidence 32222 2466789999999 999999887776 899999999844444332 1111 2334554 9 999
Q ss_pred eEEEecCCCeEEEEEee-cCceEEEEecccccccCCCCceeeE-EEeeccCCCceEEEEe-CCCC----cEEEEEecccC
Q 017773 290 LLGCGSETNQVFVYDVR-WGEPVWVHDFEPVTAAGSERGFVSS-VCWRRVGEDECTLVAG-GSDG----LLHVFVGKKKP 362 (366)
Q Consensus 290 ~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~-~~dg----~i~iw~~~~~~ 362 (366)
++++++.|+.+++|+++ +++....+ ..|...+.. ++|+| +++.|+.+ +.++ .|+.|+++++.
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~~~~~~l--------~~~~~~v~~~~~~sp---dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTGRLIRQV--------TKGEWEVTNFAGFDP---KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEEECTTSSCEEEEEETTSCEEEEC--------CCSSSCEEEEEEECT---TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEEEccCCccEEEEEECCCCEEEec--------CCCCeEEEeeeEEcC---CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 99999999999999987 55555443 335566776 79999 77666554 4444 56666665543
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=4.1e-23 Score=176.72 Aligned_cols=237 Identities=14% Similarity=0.038 Sum_probs=176.9
Q ss_pred EEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEe
Q 017773 103 LKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVST 182 (366)
Q Consensus 103 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~ 182 (366)
++++++ +.++++++.++.|.+||+.+++.+..+..+....+..++|+|+++.+++++..++.|.+||+. +++....
T Consensus 5 ~~~~~~--~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~--t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAG--HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD--TCKNTFH 80 (349)
T ss_dssp CCCCTT--CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEEE
T ss_pred ccccCC--CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC--CCcEEEE
Confidence 456676 889999999999999999999888777665422577899999998876777789999999998 6777766
Q ss_pred ecCCCC----CCCeEEEEEcCCCCcEEEEEecC------------CeEEEEecCCCC--CCeeEeecccCcEEEEEEc-C
Q 017773 183 VQPSAS----RSAVCCVEFHPFGSSLVAAGCAD------------KKAYAYDVRKMV--DPVLVFDGHRKTVTYIRFL-D 243 (366)
Q Consensus 183 ~~~~~~----~~~i~~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~-~ 243 (366)
+..... ...+..++|+|+| +.+++++.+ +.|.+||+.++. +.+..+. +...+.+++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred EEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence 654321 2237889999998 677777654 899999998741 2233333 33468889999 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecccc------------------------ee----------------------
Q 017773 244 VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN------------------------NR---------------------- 277 (366)
Q Consensus 244 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------~~---------------------- 277 (366)
++ +++++ +.|.+||..+++.+..+..+.. ..
T Consensus 159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 77 55554 3499999999887766653310 00
Q ss_pred --------------------eeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 278 --------------------NFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 278 --------------------~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
....+.++| ++++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~ 304 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYYCVAFDK 304 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCCEEEECS
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCccceEECC
Confidence 112334458 99999888 88999999999988776642 23467899999
Q ss_pred cCCCceEEEEeCCCCcEEEEEecccC
Q 017773 337 VGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 337 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
++++|++++.++.|++||+++.+
T Consensus 305 ---dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 305 ---KGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ---SSSCEEEESBSSEEEEEETTTTE
T ss_pred ---CCCEEEEecCCCeEEEEeccccc
Confidence 88888888889999999997643
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=2.7e-21 Score=166.40 Aligned_cols=288 Identities=8% Similarity=0.034 Sum_probs=181.7
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecC----CeEEEEEceecc-cccceeeeecCceece
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIA----RKIRIYNIKSVL-VDHPVVAVVDHSKVCD 91 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~d----g~i~iw~~~~~~-~~~~~~~~~~~~~~~~ 91 (366)
.+.++.++..++.+...... +...+..++|+|+|++|++++.+ +.|.+|++.... .........
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~------- 96 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK------- 96 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-------
T ss_pred CEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-------
Confidence 34444555555554322211 46677889999999999998875 799999987631 111111111
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCceeEee------ecCC-------CCceeeEEeccCCCce
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGD-YDGVVMEYDLEKKVPIFER------DEHG-------GRRVWSVDYSKGDPVL 157 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~------~~~~-------~~~v~~i~~~~~~~~l 157 (366)
.+......+++ + +++|++++ .++.|.+|++.....+... .+.. ...+.+++|+|+++.+
T Consensus 97 ---~~~~~p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 97 ---TMGADPCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp ---CSSSCEEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred ---cCCCCcEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 11234666777 5 66666654 6889999999754322211 1100 1135789999999988
Q ss_pred EEEecCCCcEEEeeCCCCCC----c-ee-----EeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCeEEEEecCCCCCC-
Q 017773 158 GASGSDDGTMQMWDPRCDGG----K-CV-----STVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDP- 225 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~----~-~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~- 225 (366)
+++...++.|.+|++....+ + .. ..... .....+..++|+|+| +++++++ .++.|.+||++++ ..
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g-~~~ 246 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADG-MLD 246 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETT-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCC-ceE
Confidence 67777789999999874332 2 11 12222 233467899999999 5555555 6899999999864 22
Q ss_pred -eeEe---ecccCcEEEEEEc-CCCEEEEEeCC--CcEEEEecC--CCc--eeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 226 -VLVF---DGHRKTVTYIRFL-DVDTLVTAGTD--GCLKLWNVN--DSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 226 -~~~~---~~~~~~v~~~~~~-~~~~l~~~~~d--~~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
+..+ ..+......++|+ ++++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+ |+|++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s--pdg~~l~~~ 323 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT--PNGKYLLVA 323 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC--TTSCEEEEE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC--CCCCEEEEE
Confidence 2222 2233456799999 89988766654 899999996 343 4444443 3344555555 999988877
Q ss_pred c-CCCeEEEEEee--cCceEEEEecccccccCCCCceeeEEEee
Q 017773 295 S-ETNQVFVYDVR--WGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 295 ~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
+ .++.|.+|+++ +++...... ..+...+.+++|.
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~-------~~~~~~p~~v~~~ 360 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKK-------DIKVDKPVCLKFV 360 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSC-------CEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecce-------eeeCCCCeEEEEc
Confidence 6 67899997765 555443211 1133467888875
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2e-21 Score=167.18 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=178.5
Q ss_pred CCCCEEEEee----cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC----CcE
Q 017773 52 PSDSVFATGG----IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD----GVV 123 (366)
Q Consensus 52 ~~~~~l~t~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i 123 (366)
+...+++.|+ .++.|.+|.++............ +...+..++|+|+ +++|++++.+ +.|
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-----------~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v 77 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-----------EVANPSYLIPSAD--GKFVYSVNEFSKDQAAV 77 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-----------ECSCCCSEEECTT--SSEEEEEECCSSTTCEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-----------cCCCCceEEECCC--CCEEEEEEccCCCCCcE
Confidence 3344566664 35689999886432211111111 2345788999999 9999988875 799
Q ss_pred EEEeCCC--Cce--eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEe----ecCC--------C
Q 017773 124 MEYDLEK--KVP--IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVST----VQPS--------A 187 (366)
Q Consensus 124 ~iw~~~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~----~~~~--------~ 187 (366)
.+|+++. ++. +.....+.. ....+++ +++.++++...++.|.+|++.. ...+.. .... .
T Consensus 78 ~~~~~~~~~g~~~~~~~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 78 SAFAFDKEKGTLHLLNTQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQ--DGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEETTTTEEEEEEEEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCT--TSCBCSCSEEEECCCCCSCTTTC
T ss_pred EEEEEeCCCCcEEEeeEeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCC--CCcCcccceeEEccCCCCCcccc
Confidence 9998865 432 233333333 5677777 7887866666789999999972 222111 1111 1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC------Ce------eEeecccCcEEEEEEc-CCCEEEEEe-CC
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD------PV------LVFDGHRKTVTYIRFL-DVDTLVTAG-TD 253 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~------~~~~~~~~~v~~~~~~-~~~~l~~~~-~d 253 (366)
+...+.+++|+|+|..++++...++.|.+|++..... .. .....+......++|+ +++++++++ .+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 1234688999999944555555689999999886532 11 1122344567899999 888777766 68
Q ss_pred CcEEEEecCCCce--eeeeec---ccceeeeEEEEEecCCCeEEEecC--CCeEEEEEee--cCceEEEEecccccccCC
Q 017773 254 GCLKLWNVNDSRV--IRTYKG---HVNNRNFVGLSVWRHGGLLGCGSE--TNQVFVYDVR--WGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 254 ~~i~iwd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~~~~~~~~~~~~~~~~ 324 (366)
+.|.+||+.+++. +..+.. +......+++ +|+|++|+++.. ++.|.+|++. +++........ .
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~--spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~------~ 304 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL--SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL------T 304 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE--CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE------C
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEE--CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec------C
Confidence 9999999987643 333322 2222334444 499998876655 4899999996 44432221111 1
Q ss_pred CCceeeEEEeeccCCCceEEEEeC-CCCcEEEEEec
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGG-SDGLLHVFVGK 359 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 359 (366)
...+.+++|+| ||++|++++ .++.|.+|+++
T Consensus 305 -g~~~~~~~~sp---dg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 -GIHPRNFIITP---NGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SSCCCEEEECT---TSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCCceEEECC---CCCEEEEEECCCCCEEEEEEE
Confidence 34678999999 888887776 67899997664
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=2.6e-22 Score=176.27 Aligned_cols=205 Identities=12% Similarity=0.004 Sum_probs=149.1
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----------ceeEee----ecCCCCceeeEEeccCCCceEE---Ee
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----------VPIFER----DEHGGRRVWSVDYSKGDPVLGA---SG 161 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~----~~~~~~~v~~i~~~~~~~~l~~---~~ 161 (366)
.++.++++++ +.++++++.++ +++|+.... ...... ..+....|.+++|+|+++++++ ++
T Consensus 38 ~~n~lavs~~--~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 38 RSSLLAVSNK--YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CCBCEEEETT--TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CccEEEEecC--CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4788999998 88999998887 888875311 011100 1111237999999999998843 88
Q ss_pred cCCCcEEEeeCCCC------CCceeEee-cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccC
Q 017773 162 SDDGTMQMWDPRCD------GGKCVSTV-QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRK 234 (366)
Q Consensus 162 ~~dg~v~~~d~~~~------~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 234 (366)
+.|+.|++||+... ..+.+..+ ...+|...|.+++|+|++..++++++.||+|++||+++. .......+|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCCC
Confidence 99999999998721 00222222 223577899999999985589999999999999999987 45555667899
Q ss_pred cEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc-----eeeeEEEEEecCCCeEEEe-cCCC------eEE
Q 017773 235 TVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-----NRNFVGLSVWRHGGLLGCG-SETN------QVF 301 (366)
Q Consensus 235 ~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~dg------~i~ 301 (366)
.|.+++|+ ++++|++++.||.|++||++ ++....+..|.. .....+++|++++.++++. ..|| .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 99999999 99999999999999999998 555555544321 2244555555888887543 2333 389
Q ss_pred EEEeecC
Q 017773 302 VYDVRWG 308 (366)
Q Consensus 302 iwd~~~~ 308 (366)
+|++.+.
T Consensus 273 i~~l~~~ 279 (434)
T 2oit_A 273 MALLPKK 279 (434)
T ss_dssp EEECCCT
T ss_pred EEEeccC
Confidence 9999865
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=2.9e-22 Score=171.44 Aligned_cols=240 Identities=14% Similarity=0.118 Sum_probs=171.5
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE-EEEcCCCcEEE
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL-GSGDYDGVVME 125 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~i 125 (366)
.+++++++.++++++.++.|++||..+++... .+.... ...+..++|+|+ ++++ +++..++.|.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~---------~~~~~~~~~s~d--g~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPD---------KFGPGTAMMAPD--NRTAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSS---------CCSSCEEEECTT--SSEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEE---EEecCC---------CCCCceeEECCC--CCEEEEEeCCCCcEEE
Confidence 45688889999999999999999998765433 221111 114678999999 8755 55667899999
Q ss_pred EeCCCCceeEeeecCC-----CCceeeEEeccCCCceEEEecC------------CCcEEEeeCCCCCCce---eEeecC
Q 017773 126 YDLEKKVPIFERDEHG-----GRRVWSVDYSKGDPVLGASGSD------------DGTMQMWDPRCDGGKC---VSTVQP 185 (366)
Q Consensus 126 w~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~~~~------------dg~v~~~d~~~~~~~~---~~~~~~ 185 (366)
||+.+++....+.... ...+..++|+|+++.+ ++++. ++.|.+||+. +++. +....
T Consensus 70 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~- 145 (349)
T 1jmx_B 70 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTA--DGLEAKPVRTFP- 145 (349)
T ss_dssp EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGG--GGGGBCCSEEEE-
T ss_pred EeCCCCcEEEEEEcccccccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECC--Cccccceeeecc-
Confidence 9999998877766433 1237899999999988 55554 4899999998 4332 23333
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc--------------------------------
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-------------------------------- 233 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------------------- 233 (366)
+...+.+++|+|+| ++ ++++ +.|++||+.++ +....+..+.
T Consensus 146 --~~~~~~~~~~s~dg-~l-~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 146 --MPRQVYLMRAADDG-SL-YVAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp --CCSSCCCEEECTTS-CE-EEES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred --CCCcccceeECCCC-cE-EEcc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 23368899999999 54 4443 34999999876 3444333221
Q ss_pred ------------------------------------CcEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccc
Q 017773 234 ------------------------------------KTVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN 275 (366)
Q Consensus 234 ------------------------------------~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 275 (366)
..+..++++ ++++++++ ++.|.+||+.+++.+..+....
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~- 295 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH- 295 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-
Confidence 123345554 56677777 8899999999998888776433
Q ss_pred eeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 276 NRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
.+..++++ |++++|++++.++.|.+||+.+++.+..+..
T Consensus 296 ~~~~~~~s--~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 296 TYYCVAFD--KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CCCEEEEC--SSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CccceEEC--CCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34455555 9999998888899999999999988877654
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=190.20 Aligned_cols=278 Identities=9% Similarity=0.043 Sum_probs=185.3
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC-------
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY------- 119 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------- 119 (366)
.++|+|+|++++++ .|+.|++||+.+++... .+..+... ...+.+++|+|+ |++|++++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~---~~~~~~~~-------~~~~~~~~~SpD--g~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT---ILSNRTMK-------SVNASNYGLSPD--RQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE---EECHHHHH-------TTTCSEEEECTT--SSEEEEEEEEEECSSS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE---EEcccccc-------ccceeeEEECCC--CCeEEEEecCceeEEe
Confidence 77999999766665 59999999998865432 22221100 013889999999 999998876
Q ss_pred --CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe-----
Q 017773 120 --DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV----- 192 (366)
Q Consensus 120 --dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i----- 192 (366)
++.|++||+.+++.+..... .. .+..++|+|+|+.+ +.+. ++.|++||+. +++.... ...++...+
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l-~~-~~~~~~~SPDG~~l-a~~~-~~~i~~~~~~--~g~~~~l-~~~~~~~~v~~g~~ 159 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNEL-PR-PIQYLCWSPVGSKL-AYVY-QNNIYLKQRP--GDPPFQI-TFNGRENKIFNGIP 159 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCC-CS-SBCCEEECSSTTCE-EEEE-TTEEEEESST--TSCCEEC-CCCCBTTTEEESSC
T ss_pred ecceEEEEEECCCCccccceec-Cc-ccccceECCCCCEE-EEEE-CCeEEEEeCC--CCCcEEE-ecCCCcCCeEcccc
Confidence 68999999998876211111 12 68899999999998 6554 7899999998 5554432 222222222
Q ss_pred ------------EEEEEcCCCCcEEEEEecCC----------------------------------eEEEEecCCCCCCe
Q 017773 193 ------------CCVEFHPFGSSLVAAGCADK----------------------------------KAYAYDVRKMVDPV 226 (366)
Q Consensus 193 ------------~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~~ 226 (366)
.+++|+|+| +.|++++.|. .|++||+.++ +..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~ 237 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYV 237 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHH
T ss_pred cceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-Ccc
Confidence 489999999 6777776542 7889999876 221
Q ss_pred --------eEeecccCcEEEEEEc-CCCEEEEEeCC----CcEEEEe----cCCCceeeee----ecccceee-----eE
Q 017773 227 --------LVFDGHRKTVTYIRFL-DVDTLVTAGTD----GCLKLWN----VNDSRVIRTY----KGHVNNRN-----FV 280 (366)
Q Consensus 227 --------~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~----~~~~~~~~-----~~ 280 (366)
..+..|...+..++|+ +++++++.... ..|.+|| ..+++....+ ..|...+. ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc
Confidence 1133577789999999 76666664332 2488899 8777766555 35655554 45
Q ss_pred EEEEecCCCeEEE--ecCCC--eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC----CCc
Q 017773 281 GLSVWRHGGLLGC--GSETN--QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS----DGL 352 (366)
Q Consensus 281 ~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~----dg~ 352 (366)
.|+ |||+.++. ...+| .|.+||+.+++.. .+ ..+...+..+.++. ++.+++++.. ++.
T Consensus 318 ~~s--pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~l--------t~~~~~v~~~~~~d---~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 318 VFS--YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QI--------TSGKWEAINIFRVT---QDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp EEC--TTSSCEEEEEECTTSCEEEEEESSCSTTCE-EC--------SCSSSCEEEEEEEC---SSEEEEEESCGGGCTTC
T ss_pred EEC--CCCCeEEEEEEccCCceEEEEEECCCCceE-ec--------ccCceEEEEEEEEe---CCEEEEEEecCCCCCce
Confidence 555 99996553 44555 5666777666532 22 22345577776663 5555666655 588
Q ss_pred EEEEEecc
Q 017773 353 LHVFVGKK 360 (366)
Q Consensus 353 i~iw~~~~ 360 (366)
.++|.+..
T Consensus 384 ~~l~~~~~ 391 (719)
T 1z68_A 384 RNIYRISI 391 (719)
T ss_dssp BEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998753
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=1.9e-20 Score=161.19 Aligned_cols=272 Identities=10% Similarity=0.102 Sum_probs=174.2
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEce-ecccccceeeeecCceeceeeee
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIK-SVLVDHPVVAVVDHSKVCDYYIC 95 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~ 95 (366)
.+..+.++.+++.+...... .......+..++|+|+|++|++++.+ .|.+|++. +++... ...+. .
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~-~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----~~~~~-------~ 81 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRT-EIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----EASHP-------I 81 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEE-ECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE----EEEEE-------C
T ss_pred cEEEEEEECCCCCEEEeeEE-ccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE----eeEee-------c
Confidence 34555666666655322110 01134468899999999999998887 99999987 443211 11110 0
Q ss_pred cCCceeEEEEecCCCCcE--EEEEc-------------CCCcEEEEeCC-CCceeEeeec---CCCCceeeEEeccCCCc
Q 017773 96 TPAKLSSLKWKPGTSGRV--LGSGD-------------YDGVVMEYDLE-KKVPIFERDE---HGGRRVWSVDYSKGDPV 156 (366)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~--l~~~~-------------~dg~i~iw~~~-~~~~~~~~~~---~~~~~v~~i~~~~~~~~ 156 (366)
.+...+++|+|+ |++ ++++. .++.+.+|++. .++....+.. .....+.+++|+|++++
T Consensus 82 -~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 82 -GGHPRANDADTN--TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp -CSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred -CCCCccEEECCC--CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence 012455889998 884 55553 68999999997 4554433331 12237899999999998
Q ss_pred eEEEecCCCcEEEeeCCCCCCce--eEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCeEEEEecCCC-CCCe---eEe
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKC--VSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKM-VDPV---LVF 229 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~---~~~ 229 (366)
++++...++.|++||+.. +++. +..+....+...+..++|+|+| +++++++ .++.|.+|+++.. .+.. ..+
T Consensus 159 l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp EEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 844444578999999972 2332 2333322224478999999999 5666555 5789999987631 1221 112
Q ss_pred e-------cccC------cEEEEE-Ec-CCCEEEEEeCCC------cEEEEecC-CCceee---eeecccceeeeEEEEE
Q 017773 230 D-------GHRK------TVTYIR-FL-DVDTLVTAGTDG------CLKLWNVN-DSRVIR---TYKGHVNNRNFVGLSV 284 (366)
Q Consensus 230 ~-------~~~~------~v~~~~-~~-~~~~l~~~~~d~------~i~iwd~~-~~~~~~---~~~~~~~~~~~~~~~~ 284 (366)
. +|.. .+..++ |+ ++++|+++..+. .|.+|++. +++... ....+......++++
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s- 315 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS- 315 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE-
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec-
Confidence 1 1222 578999 99 888887765432 89999996 565433 133333344556666
Q ss_pred ec---CCCeEEEecC-CCeEEEEEeecC
Q 017773 285 WR---HGGLLGCGSE-TNQVFVYDVRWG 308 (366)
Q Consensus 285 ~~---~~~~l~~~~~-dg~i~iwd~~~~ 308 (366)
| +|++|++++. ++.|.+|+++..
T Consensus 316 -p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 -PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8 8999998876 489999999866
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=3e-22 Score=183.32 Aligned_cols=233 Identities=13% Similarity=0.040 Sum_probs=170.5
Q ss_pred CceeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC---CCcEEEeeCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDY-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD---DGTMQMWDPR 173 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---dg~v~~~d~~ 173 (366)
.+|++++|+|| |+.|++++. ||++.||++++++.. .+..+....+..++|+|+ + ++++++. +....+|.+.
T Consensus 22 ~~~~~~~~~~D--G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 22 VEKYSLQGVVD--GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp SCEEEEEEEET--TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEE
T ss_pred cchheeecCCC--CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEe
Confidence 46999999999 999998876 999999999666544 444444338999999998 4 5466654 4556666554
Q ss_pred C-CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 174 C-DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
. ..+... .+... ......+|+|+++.++++...++.+.+||+.++ +... +..+.. .+++|+ +|+++++++
T Consensus 97 ~~~~g~~~-~l~~~---~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~-l~~~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAV---KPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRE-LARLPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TTSTTCCE-ECTTS---CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEE-EEEESS--CEEEEEEETTEEEEEE
T ss_pred ccCCCccc-cccCC---CCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEE-eecCCC--ceEEECCCCCEEEEEE
Confidence 2 012222 33211 144566888888655555555666669999886 3333 333333 788999 999999888
Q ss_pred CC----CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC--eEEEEEeecCceEEEEecccccccCCC
Q 017773 252 TD----GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN--QVFVYDVRWGEPVWVHDFEPVTAAGSE 325 (366)
Q Consensus 252 ~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 325 (366)
.+ +.|++||+.+++.. .+..|...+...+|+ |||+.|+++..++ .|++||+.+++.. .+ .+|
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~ 236 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASIS--PGMKVTAGLETAREARLVTVDPRDGSVE-DL--------ELP 236 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEEC--TTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------CCS
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecCCCccccceEC--CCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------cCC
Confidence 77 78999999888754 667777776666665 9999999888888 8999999988766 32 345
Q ss_pred CceeeEEE--------eeccCCCceEEEEeCCCCcEEEEEe
Q 017773 326 RGFVSSVC--------WRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 326 ~~~v~~~~--------~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
...+..++ |+| ||.++++++.||.+++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~sp---dg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLP---DGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSHHHHHCCSEEEEEEECT---TSCEEEEEEETTEEEEEET
T ss_pred CcChhhhhhccccceeEcC---CCcEEEEEEcCCcEEEEEE
Confidence 66677777 999 8889999999999999998
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=6.2e-22 Score=185.79 Aligned_cols=310 Identities=10% Similarity=0.011 Sum_probs=197.8
Q ss_pred ccceeeeeecCCCceeeecCCCCccCC---CceEEEEECCCCCEEEEeec---------CCeEEEEEceecccccceeee
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVS---DSIGVIEFDPSDSVFATGGI---------ARKIRIYNIKSVLVDHPVVAV 83 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~ 83 (366)
.+..+..|+..++........ |. ..+.+++|||||++||+++. ++.|++||+.+++..... .+
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l 108 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSN----RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL 108 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECH----HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CC
T ss_pred CCCCEEEEEcCCCcEEEEEcc----ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ec
Confidence 456677788777654332211 21 13899999999999999876 689999999876541100 01
Q ss_pred ecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCce-----------------e
Q 017773 84 VDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRV-----------------W 146 (366)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v-----------------~ 146 (366)
...+..++|+|+ |+.|+.+. ++.|++|++.+++............| .
T Consensus 109 -------------~~~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 109 -------------PRPIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp -------------CSSBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred -------------CcccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 134888999999 99999886 78999999988876543322211112 4
Q ss_pred eEEeccCCCceEEEecCCC----------------------------------cEEEeeCCCCCCcee--EeecC----C
Q 017773 147 SVDYSKGDPVLGASGSDDG----------------------------------TMQMWDPRCDGGKCV--STVQP----S 186 (366)
Q Consensus 147 ~i~~~~~~~~l~~~~~~dg----------------------------------~v~~~d~~~~~~~~~--~~~~~----~ 186 (366)
+++|+|+|+.| ++++.|. .|++||+. +++.. ..+.. .
T Consensus 173 ~~~wSPDG~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 173 ALWWSPNGKFL-AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT--YPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp CEEECTTSSEE-EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS--CHHHHCCEECCCCHHHH
T ss_pred cEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC--CCCccceeEccCCccCC
Confidence 89999999998 5555431 78899998 55432 12211 1
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecC----CeEEEEe----cCCCCCCeeEe----ecccCcEE-----EEEEc-CCCEEE
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCAD----KKAYAYD----VRKMVDPVLVF----DGHRKTVT-----YIRFL-DVDTLV 248 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~~----~~~~~~v~-----~~~~~-~~~~l~ 248 (366)
.+...+..++|+|++ +++++.... ..|.+|| +.++ +....+ ..|...+. .+.|+ +++.++
T Consensus 250 ~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 250 SSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp TSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 456689999999997 777774432 2488899 7665 333333 35666666 78898 887554
Q ss_pred E--EeCCC--cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC-----CCeEEEEEeec--Cce-EEEEec
Q 017773 249 T--AGTDG--CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE-----TNQVFVYDVRW--GEP-VWVHDF 316 (366)
Q Consensus 249 ~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~--~~~-~~~~~~ 316 (366)
. +..+| .|.+||+.+++ ...+..+...+..+.+ + +++.|+..+. ++..++|.+.. +.. ...+..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~--~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFR--V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEE--E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred EEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEE--E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 3 44555 57777877665 4455555444444333 3 5665554444 48899998874 321 112110
Q ss_pred ccccccCCCCceeeEEEeeccCCCceEEEE-eCCC--CcEEEEEecccC
Q 017773 317 EPVTAAGSERGFVSSVCWRRVGEDECTLVA-GGSD--GLLHVFVGKKKP 362 (366)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s-~~~d--g~i~iw~~~~~~ 362 (366)
.+.+|...+..+.|+| ++++++. ++.+ ..+.+|++.++.
T Consensus 404 ----~~~~~~~~~~~~~~s~---dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 404 ----HLRKERCQYYTASFSD---YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp ----TTTTTTBCBEEEEECG---GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ----ccCCCCCceEEEEECC---CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 0123566788999999 7666663 4433 467888876543
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1.3e-20 Score=163.76 Aligned_cols=282 Identities=11% Similarity=0.041 Sum_probs=179.4
Q ss_pred EEECCCCCEEEEeec-CC--eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 48 IEFDPSDSVFATGGI-AR--KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 48 ~~~s~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
.+|+|||++|+.++. +| .|.+||+.+++... .... +...+..+.|+|+ ++.|+.++.++.|+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~----------~~~~~~~~~~spd--g~~l~~~~~~~~l~ 105 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEG----------RGDNTFGGFLSPD--DDALFYVKDGRNLM 105 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCS----------SCBCSSSCEECTT--SSEEEEEETTTEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeC----------CCCCccceEEcCC--CCEEEEEeCCCeEE
Confidence 789999999998887 66 47777876654322 1111 1223446789999 99999999899999
Q ss_pred EEeCCCCceeEeeecCCCCceeeEE--eccCCCceEEE---------------------ecCCCcEEEeeCCCCCCceeE
Q 017773 125 EYDLEKKVPIFERDEHGGRRVWSVD--YSKGDPVLGAS---------------------GSDDGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 125 iw~~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~---------------------~~~dg~v~~~d~~~~~~~~~~ 181 (366)
+||+.+++.......+.. .+.... +++++..++.. ...+..|.+||+. +++...
T Consensus 106 ~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~ 182 (388)
T 3pe7_A 106 RVDLATLEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK--TGESTV 182 (388)
T ss_dssp EEETTTCCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT--TCCEEE
T ss_pred EEECCCCcceeeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC--CCceEE
Confidence 999999887666655554 454443 47888876321 2245679999998 555444
Q ss_pred eecCCCCCCCeEEEEEcC-CCCcEEEEEecC------CeEEEEecCCCCCCeeEeeccc--CcEEEEEEc-CCCEEEEEe
Q 017773 182 TVQPSASRSAVCCVEFHP-FGSSLVAAGCAD------KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~ 251 (366)
... +...+..++|+| +| ..|+....+ ..|.++|.... ....+..+. ..+....|+ +++.|+..+
T Consensus 183 l~~---~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 183 ILQ---ENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp EEE---ESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred eec---CCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence 433 334789999999 88 666655543 37888887764 333444343 357788999 888775544
Q ss_pred C-CC----cEEEEecCCCce--eeeeecccce---eeeEEEEEecCCCeEEEe---------cCCCeEEEEEeecCceEE
Q 017773 252 T-DG----CLKLWNVNDSRV--IRTYKGHVNN---RNFVGLSVWRHGGLLGCG---------SETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 252 ~-d~----~i~iwd~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~ 312 (366)
. ++ .|.+||+.+++. +..+.++... .....| +|||+.|+.. ..+..|++||+.+++...
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM--VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE--EEEECCC------------CCCCEEEEEETTTTEEEE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE--ccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 3 22 399999998864 3333321110 111234 4999988754 456789999998876543
Q ss_pred EEecccc---cccCCCCceeeEEEeeccCCCceEEEEeC-CCCcEEEEEec
Q 017773 313 VHDFEPV---TAAGSERGFVSSVCWRRVGEDECTLVAGG-SDGLLHVFVGK 359 (366)
Q Consensus 313 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 359 (366)
... ... .........+.+++|+| ||+.|+..+ .+|...||.++
T Consensus 335 l~~-~~~~~~~~~~~~~~~~~~~~~sp---Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 335 VAR-HDTSWKVFEGDRQVTHPHPSFTP---DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEE-CCCCCCCBTTBSSTTCCCCEECT---TSSEEEEEECTTSSCEEEEEE
T ss_pred ecc-ccCcccccccccccCCCCccCCC---CCCEEEEEecCCCceeEEEEE
Confidence 221 100 00000111478889999 887776554 57777777654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=7.3e-20 Score=157.58 Aligned_cols=251 Identities=10% Similarity=0.038 Sum_probs=164.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCC-CCceeEeeecCCCCceeeEEeccCCCc-eEEEec-------------C
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE-KKVPIFERDEHGGRRVWSVDYSKGDPV-LGASGS-------------D 163 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~-------------~ 163 (366)
.+..++|+|+ +++|++++.+ .|.+|++. +++............+..++|+|+++. +++++. .
T Consensus 41 ~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 41 PISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCcEEEECCC--CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 5788999999 9999988877 99999997 676544332211114567999999986 335553 6
Q ss_pred CCcEEEeeCCCCCCceeEeecC--CCCCCCeEEEEEcCCCCcEEEEEe-cCCeEEEEecC-CCCCCe--eEee--cccCc
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQP--SASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVR-KMVDPV--LVFD--GHRKT 235 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~--~~~~--~~~~~ 235 (366)
+|.+.+|++.. .++....+.. ..+...+.+++|+|+| ++++++. .++.|++||+. ++ +.. ..+. .|...
T Consensus 118 ~g~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 118 AGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDH 194 (365)
T ss_dssp CCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCC
T ss_pred CceEEEEccCC-CCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCC-CEEEeeeEecCCCCCC
Confidence 89999999972 2444333321 1234578999999999 5666554 46899999998 54 322 2232 23566
Q ss_pred EEEEEEc-CCCEEEEEeC-CCcEEEEecC--CCcee---eeee---c----ccc------eeeeEEEEEecCCCeEEEec
Q 017773 236 VTYIRFL-DVDTLVTAGT-DGCLKLWNVN--DSRVI---RTYK---G----HVN------NRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 236 v~~~~~~-~~~~l~~~~~-d~~i~iwd~~--~~~~~---~~~~---~----~~~------~~~~~~~~~~~~~~~l~~~~ 295 (366)
+..++|+ +++++++++. ++.|.+|++. +++.. ..+. . |.. .+..+++ ++|||++|+++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~spdG~~l~v~~ 273 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFSGKYMFASS 273 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTTSSEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE-ECCCCCEEEEEC
Confidence 8999999 8888877764 7899999765 45432 1222 1 111 2444550 449999988765
Q ss_pred CC-C-----eEEEEEee-cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC-CCcEEEEEeccc
Q 017773 296 ET-N-----QVFVYDVR-WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS-DGLLHVFVGKKK 361 (366)
Q Consensus 296 ~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~ 361 (366)
.+ + .|.+|++. +++........ ..+...+..++|+|..-||++|++++. ++.|.+|+++..
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLS-----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEE-----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeee-----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 43 2 89999996 56544321100 112345678899981002568888876 489999998764
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=7.9e-19 Score=148.84 Aligned_cols=247 Identities=10% Similarity=0.062 Sum_probs=183.3
Q ss_pred CceeEEEEecCCCCcEEEEEcCC------------------------CcEEEEeCCCCceeEeeecCCCCceeeEEeccC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYD------------------------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG 153 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~ 153 (366)
+.+.+++++|+ |+++++...+ +.|.+||..+++....+....-.....++++++
T Consensus 24 ~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 46999999999 9999888777 479999999888776665333337889999999
Q ss_pred CCceEEEecCCCcEEEeeCCCCCCc-eeEeecC-------CCCCCCeEEEEEcC-CCCcEEEEEe-cCCeEEEEecCCCC
Q 017773 154 DPVLGASGSDDGTMQMWDPRCDGGK-CVSTVQP-------SASRSAVCCVEFHP-FGSSLVAAGC-ADKKAYAYDVRKMV 223 (366)
Q Consensus 154 ~~~l~~~~~~dg~v~~~d~~~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~~l~~~~-~d~~i~i~d~~~~~ 223 (366)
++.+ ++...++.|++||.. ... .+..+.. ..+...+..++++| ++ .++++.+ .++.|++||...
T Consensus 102 g~l~-v~d~~~~~v~~~~~~--g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g-- 175 (329)
T 3fvz_A 102 GNYW-VTDVALHQVFKLDPH--SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSG-- 175 (329)
T ss_dssp SCEE-EEETTTTEEEEECTT--CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTS--
T ss_pred CCEE-EEECCCCEEEEEeCC--CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCC--
Confidence 8854 888889999999986 221 4444421 23344789999999 66 7888876 699999999543
Q ss_pred CCeeEeec----------ccCcEEEEEEc-C-CCEEEEEeCCCcEEEEecCCCceeeeeec--ccceeeeEEEEEec---
Q 017773 224 DPVLVFDG----------HRKTVTYIRFL-D-VDTLVTAGTDGCLKLWNVNDSRVIRTYKG--HVNNRNFVGLSVWR--- 286 (366)
Q Consensus 224 ~~~~~~~~----------~~~~v~~~~~~-~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 286 (366)
..+..+.. +-.....++++ + +.++++...++.|++||..+++.+..+.. +...+..+++. |
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--pg~~ 253 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI--PGFL 253 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE--TTEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec--CCEE
Confidence 45555432 22347899998 6 67777778889999999998888888743 33444445444 7
Q ss_pred ---CCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 287 ---HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 287 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+++..++...+..|++|++.+++.+..+... .++...+.+++++| +|.++++...++.|++|+++...
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-----~~~~~~p~~ia~~~---dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-----RKHFDMPHDIVASE---DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-----SSCCSSEEEEEECT---TSEEEEEESSSCCEEEEEEEECS
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-----CCccCCeeEEEECC---CCCEEEEECCCCEEEEEeCCccc
Confidence 4444444455669999999999888765311 34567789999999 88899999999999999997643
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.87 E-value=1.4e-18 Score=144.46 Aligned_cols=250 Identities=7% Similarity=0.078 Sum_probs=176.5
Q ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEe-cCCCCcEEEEEc
Q 017773 40 AVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWK-PGTSGRVLGSGD 118 (366)
Q Consensus 40 ~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~ 118 (366)
++-..+.+++++|+++++++...++.|.+|+.+. .... .+.... ...++...+..+++. ++ +.++++..
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~---~~~~~~----~~~~~~~~p~~i~~~~~~--g~l~v~~~ 96 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF---QFGECG----KRDSQLLYPNRVAVVRNS--GDIIVTER 96 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE---EECCBS----SSTTCBSSEEEEEEETTT--TEEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEE---EecccC----CCcccccCceEEEEEcCC--CeEEEEcC
Confidence 3667799999999999888888889999999763 2211 111100 001123457899995 55 77776664
Q ss_pred C-CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 119 Y-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 119 ~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
. ++.|.+|| .+++.+..+.......+.++++.++++.+ ++...++.|.+||.. ++.+..+....+...+..+++
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRII-VVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEE-EEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEE
T ss_pred CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEE-EEECCCCEEEEEcCC---CCEEEEeCCCCccCCcEEEEE
Confidence 3 78999999 55666666644333378999999988744 777778999999965 555666543334457899999
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc--cCcEEEEEEc-CCCEEEEEeCCC-cEEEEecCCCceeeeeecc
Q 017773 198 HPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH--RKTVTYIRFL-DVDTLVTAGTDG-CLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~ 273 (366)
+|+| +++++...++.|++||... +.+..+..+ ...+..++++ ++.++++...++ .|.+||. +++.+..+..+
T Consensus 172 ~~~g-~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 172 NDKQ-EIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp CSSS-EEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred CCCC-CEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 9998 7878777899999999754 345555433 3568899998 888888887776 9999995 56777777655
Q ss_pred cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 274 VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
........++++|+|+++++ +.|+.|++|++....
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 43322233444499987777 568999999986543
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=7.4e-20 Score=171.91 Aligned_cols=287 Identities=10% Similarity=0.006 Sum_probs=181.7
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC--
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-- 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-- 120 (366)
....+++|+|||++++++ ||.|++||+.+++... .+..+... ........++|+|+ |++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~Spd--g~~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV---FLENSTFD-----EFGHSINDYSISPD--GQFILLEYNYVK 84 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE---EECTTTTT-----TCCSCCCEEEECTT--SSEEEEEEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEE---EEechhhh-----hhcccccceEECCC--CCEEEEEECCee
Confidence 346689999999999986 8999999998876532 33333210 11122355899999 9999998865
Q ss_pred -------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCe-
Q 017773 121 -------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAV- 192 (366)
Q Consensus 121 -------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i- 192 (366)
+.+.+||+.+++... +..+.. .+...+|+|+|+.+ +.+ .++.|++||+. +++.. .+...++...+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~~-l~~~~~-~~~~~~~SPdG~~l-a~~-~~~~i~~~~~~--~~~~~-~lt~~g~~~~~~ 157 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLIT-EERIPN-NTQWVTWSPVGHKL-AYV-WNNDIYVKIEP--NLPSY-RITWTGKEDIIY 157 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEECC-SSCCCT-TEEEEEECSSTTCE-EEE-ETTEEEEESST--TSCCE-ECCSCCBTTTEE
T ss_pred eEEEccceEEEEEECCCCcEEE-cccCCC-cceeeEECCCCCEE-EEE-ECCeEEEEECC--CCceE-EEcCCCCcccee
Confidence 567799999987543 445555 79999999999998 555 46899999998 44433 33322332222
Q ss_pred ----------------EEEEEcCCCCcEEEEEe-cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC
Q 017773 193 ----------------CCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG 254 (366)
Q Consensus 193 ----------------~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 254 (366)
..+.|+||| +.|+.++ .++.+.+|++....... .+...+..+.+. .+.. ....
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~----~~~~~~~~~~yp~~G~~----~~~~ 228 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDES----LQYPKTVRVPYPKAGAV----NPTV 228 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTT----CSSCEEEEEECCBTTSC----CCEE
T ss_pred cCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCC----CCCCcceeecCCCCcCc----CCee
Confidence 358999999 5666655 44558888765331110 244456667776 4432 1223
Q ss_pred cEEEEecCC---Cc--eeeeeec------ccceeeeEEEEEecCCCeEEEe----cCCCeEEEEEeecCceEEEEecccc
Q 017773 255 CLKLWNVND---SR--VIRTYKG------HVNNRNFVGLSVWRHGGLLGCG----SETNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 255 ~i~iwd~~~---~~--~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
.|++||+.+ ++ ....+.. +...+..++|+ |||+.++.. ..+..|.+||+.+++..........
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws--pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA--TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE--ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe--CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 689999998 73 2233432 55555555655 999966654 2345799999999872110000000
Q ss_pred cccCCCCceee-----EEEeeccCCCceEEE-EeC-CCC--cEEEEEecccC
Q 017773 320 TAAGSERGFVS-----SVCWRRVGEDECTLV-AGG-SDG--LLHVFVGKKKP 362 (366)
Q Consensus 320 ~~~~~~~~~v~-----~~~~~~~~~~~~~l~-s~~-~dg--~i~iw~~~~~~ 362 (366)
.....|...|. ..+|+| ||+.|+ ..+ .+| .|++|+++++.
T Consensus 307 l~~~~~~~~v~~~~~~~p~fsp---DG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTL---DGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECT---TSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eeeccCCceEccCcCCCceEcC---CCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 00023444444 788999 887766 554 344 57777876644
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=1.2e-18 Score=149.40 Aligned_cols=289 Identities=9% Similarity=0.005 Sum_probs=192.3
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecC
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDH 86 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~ 86 (366)
+..+..|+..+++++..... +..+ .++|+|||++++++. .++.|.+||..+.+..........+
T Consensus 30 d~~v~v~D~~t~~~~~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETTTCCEEEEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred cCeEEEEECCCCeEEEEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 45788999888877654432 2333 899999999999886 3578999998765543321111000
Q ss_pred ceeceeeeecCCceeEEEEecCCCCcEEEEEcC--CCcEEEEeCCCCceeEe-eecCCCCceeeEEeccCCCceEEEecC
Q 017773 87 SKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY--DGVVMEYDLEKKVPIFE-RDEHGGRRVWSVDYSKGDPVLGASGSD 163 (366)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~~ 163 (366)
. .+......++++|+ |++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++...+++.+.
T Consensus 104 ~-------~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~---~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 104 V-------QGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA---GCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp C-------CBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT---TEEEEEECTTSSSEEEEEET
T ss_pred c-------ccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCCcEEEEEecCC---CcceeEEcCCCCeeEEEECC
Confidence 0 01134677999999 999988864 58999999999988776 5433 22335677877556688889
Q ss_pred CCcEEEeeCCCCCCceeEeec----CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe-eEeec------c
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQ----PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV-LVFDG------H 232 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~------~ 232 (366)
||.+.+|++.. .++...... ......+ ..+.++|++ ..++..+.++.++++|+......+ ..+.. +
T Consensus 172 dg~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 172 DGGLLTINLGE-DGKVASQSRSKQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TSSEEEEEECT-TSSEEEEEECCCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCcEEEEEECC-CCcEeeeccccceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 99999999872 244331211 0111112 233345666 455556688999999987542111 11110 0
Q ss_pred ----cCcEEEEEEc-CCCEEEEEeC-----------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC
Q 017773 233 ----RKTVTYIRFL-DVDTLVTAGT-----------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 233 ----~~~v~~~~~~-~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
......++++ +++.++++.. .+.|.+||+.+++.+.++..+. ...++++ |+|++|++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s--pdg~~l~v~n~ 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID--QQRNLMLTLDG 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE--TTTTEEEEECS
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC--CCCCEEEEeCC
Confidence 0111126788 7677666543 3489999999999999998876 5667766 99999998887
Q ss_pred CCeEEEEEeecC--ceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 297 TNQVFVYDVRWG--EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 297 dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
+.|.+||..++ +.+..+ ..+......++++| +|.
T Consensus 325 -~~v~v~D~~t~~l~~~~~i--------~~~G~~P~~~~~~p---~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLLRTI--------EGAAEASLQVQFHP---VGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEEEEEE--------TTSCSSEEEEEECC---CSC
T ss_pred -CeEEEEECCCCcceeeEEe--------ccCCCCcEEEEecC---CCC
Confidence 99999999999 877665 22345678899999 654
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.1e-19 Score=158.16 Aligned_cols=296 Identities=9% Similarity=-0.012 Sum_probs=186.0
Q ss_pred eecCCCceeeecCCC-CccCCCceEEEEECCCCCEEEEeecC---CeEEEEEceecccccceeeeecCceeceeeeecCC
Q 017773 23 WDFNLRTTVSSSSSP-NAAVSDSIGVIEFDPSDSVFATGGIA---RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPA 98 (366)
Q Consensus 23 w~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
.++.++..+...... ...|...+..++|+|||++|+..... ..|.+|++.+++... +.... ..
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~---------~~ 81 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGK---------GD 81 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSS---------CB
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCC---------CC
Confidence 355665544443322 11234447888999999998876543 368888877654221 11111 11
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceee-------------------EEeccCCCceEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWS-------------------VDYSKGDPVLGA 159 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~ 159 (366)
....+.|+|+ |++|+.++.++.|.+||+.+++.......+.. .... +.|+|+++.+++
T Consensus 82 ~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~ 158 (396)
T 3c5m_A 82 NTFGGFISTD--ERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF 158 (396)
T ss_dssp CTTTCEECTT--SSEEEEEETTTEEEEEETTTCCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ccccceECCC--CCEEEEEEcCCcEEEEECCCCCcEEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence 2334789999 99999998888999999998876555544432 2222 467888887732
Q ss_pred Ee----cCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC-CCCcEEEEEecC------CeEEEEecCCCCCCeeE
Q 017773 160 SG----SDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCAD------KKAYAYDVRKMVDPVLV 228 (366)
Q Consensus 160 ~~----~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~ 228 (366)
.. ..+..|.+||+. +++...... +...+..+.|+| ++ ..++..+.+ ..|.+||+... +. ..
T Consensus 159 ~~~~~~~~~~~l~~~d~~--~g~~~~~~~---~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~-~~-~~ 230 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIE--TGELEVIHQ---DTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGS-NV-RK 230 (396)
T ss_dssp HHHHHTCCCEEEEEEETT--TCCEEEEEE---ESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSC-CC-EE
T ss_pred eeeccCCCcceEEEEECC--CCcEEeecc---CCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCC-ce-eE
Confidence 22 456789999998 555544442 344789999999 66 555554433 46888998764 22 33
Q ss_pred eecc--cCcEEEEEEc-CCCEEEEEeCC-----CcEEEEecCCCceeeeeecccceeeeEEEEEec-CCCeEEEec----
Q 017773 229 FDGH--RKTVTYIRFL-DVDTLVTAGTD-----GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWR-HGGLLGCGS---- 295 (366)
Q Consensus 229 ~~~~--~~~v~~~~~~-~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~---- 295 (366)
+..+ ...+..+.|+ +++.|+..+.+ +.|.+||+.+++........ . .. .. ++| +|++++.++
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~--~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HL--MSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EE--EECSSSSEEEEEECCC-
T ss_pred eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CC--ccCCCCceEEEecCCcc
Confidence 3323 2357888999 88877766544 44999999887654322211 1 12 44 448 999888754
Q ss_pred ------------CCCeEEEEEeecCceEEEEecccccccCCCCc-----------eeeEEEeeccCCCceEEEEeCC-CC
Q 017773 296 ------------ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERG-----------FVSSVCWRRVGEDECTLVAGGS-DG 351 (366)
Q Consensus 296 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~l~s~~~-dg 351 (366)
.++.|++||+.+++...... +.. .+..++|+| ||+.|+.++. ++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~s~~~~ 373 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCK---------HSTSWDVLDGDRQITHPHPSFTP---NDDGVLFTSDFEG 373 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEE---------CCCCCCCBTTBSSTTCCCCEECT---TSSEEEEEECTTS
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccC---------CCCccccccccccCCCCCceEcc---CCCeEEEEecCCC
Confidence 34789999998776532221 112 256678999 8877776654 56
Q ss_pred cEEEEEec
Q 017773 352 LLHVFVGK 359 (366)
Q Consensus 352 ~i~iw~~~ 359 (366)
...||.++
T Consensus 374 ~~~l~~~~ 381 (396)
T 3c5m_A 374 VPAIYIAD 381 (396)
T ss_dssp SCEEEEEE
T ss_pred CceEEEEE
Confidence 66666543
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.85 E-value=2.7e-17 Score=148.00 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=212.5
Q ss_pred ccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEce--ecccccceeeeecCceeceee
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIK--SVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~ 93 (366)
.+..+..+|.+++.++..... ...+..+.|+|||+++++++.|+.|.+||+. +.+... .+...
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~-----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~---~i~~G------- 239 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA---EIKIG------- 239 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---EEECC-------
T ss_pred CCCeEEEEECCCCeEEEEEeC-----CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE---EEecC-------
Confidence 456777888888877655432 3356789999999999999999999999985 433222 22111
Q ss_pred eecCCceeEEEEe----cCCCCcEEEEEcC-CCcEEEEeCCCCceeEeeecC----------CCCceeeEEeccCCCceE
Q 017773 94 ICTPAKLSSLKWK----PGTSGRVLGSGDY-DGVVMEYDLEKKVPIFERDEH----------GGRRVWSVDYSKGDPVLG 158 (366)
Q Consensus 94 ~~~~~~v~~~~~~----~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~l~ 158 (366)
.....++|+ |+ |++++++.. +++|.++|..+.+.+..+... ....+..+..+++++.++
T Consensus 240 ----~~P~~ia~s~~~~pD--Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 240 ----SEARSIETSKMEGWE--DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp ----SEEEEEEECCSTTCT--TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred ----CCCceeEEccccCCC--CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 235789999 68 888877654 589999999998888776532 122678888899888887
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-----cc
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-----HR 233 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~ 233 (366)
+....+|.|.++|........+..+. .......+.|+|+|+.++++...++.|.++|+.++ +.+..+.. |.
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~---~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Php 389 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHP 389 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCC
T ss_pred EEecCCCeEEEEecCCCccceeeeee---ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCC
Confidence 88888899999998822112222332 22367789999999555566667899999999987 45444433 33
Q ss_pred CcEEEEEEc-CCC-EEEEEe-CCCcEEEEecCC-------CceeeeeecccceeeeEEEEEecCCCeEEEecC-------
Q 017773 234 KTVTYIRFL-DVD-TLVTAG-TDGCLKLWNVND-------SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE------- 296 (366)
Q Consensus 234 ~~v~~~~~~-~~~-~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 296 (366)
+.-..+ ++ ++. .++++. .++.|.++|..+ .+.++++......-..+.. +|++++|.+...
T Consensus 390 g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~--~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT--HPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC--CTTCSEEEEECTTCSSHHH
T ss_pred ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe--CCCCCeEEEecCCCCCccc
Confidence 222222 34 434 444543 468999999987 5677887765333233444 499999988653
Q ss_pred CCeEEEEEeecC-----ceE-EEEecccccccCCCCceeeEEEeeccCCCceEEEEeC-----CCCcEEEEEecccCC
Q 017773 297 TNQVFVYDVRWG-----EPV-WVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG-----SDGLLHVFVGKKKPL 363 (366)
Q Consensus 297 dg~i~iwd~~~~-----~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-----~dg~i~iw~~~~~~l 363 (366)
.+.|.++|+.+. ... ..+.......+..-...+..+.|+| +|+.+..+. .++.|.|+|.++.++
T Consensus 467 ~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 467 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK---DGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT---TSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC---CCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 359999999877 221 2221110001111235789999999 776766552 378999999887544
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=1.7e-18 Score=148.45 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=183.5
Q ss_pred CCCEEEEee------cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc--------
Q 017773 53 SDSVFATGG------IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-------- 118 (366)
Q Consensus 53 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------- 118 (366)
+++++++.. .|+.|.+||..+++... .+... ..+ .++|+|+ +++++++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~---~i~~g----------~~p--~i~~spd--g~~lyv~~~~~~~~~~ 76 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLG---MVPTA----------FNG--HVQVSND--GKKIYTMTTYHERITR 76 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEE---EEECC----------EEE--EEEECTT--SSEEEEEEEEETTSSS
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEE---EecCC----------CCC--ceEECCC--CCEEEEEEeccccccc
Confidence 555555543 47899999987765432 22222 123 8999999 99998886
Q ss_pred --CCCcEEEEeCCCCceeEeeecCC-----CCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEe-ecCCCCC
Q 017773 119 --YDGVVMEYDLEKKVPIFERDEHG-----GRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVST-VQPSASR 189 (366)
Q Consensus 119 --~dg~i~iw~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~-~~~~~~~ 189 (366)
.++.|.+||+.+.+.+.++.... +.....++++|++++++++... ++.|.+||+. +++.+.. +...
T Consensus 77 g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~--~~~~~~~~i~~~--- 151 (361)
T 2oiz_A 77 GKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA--KGDYVEDVTAAA--- 151 (361)
T ss_dssp SCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT--TTEEEEEEGGGT---
T ss_pred CCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC--CCcEEEEEecCC---
Confidence 35779999999988888776431 1256789999999998444433 6899999999 7777776 5532
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee------EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecC
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL------VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~ 262 (366)
....+.+.|++...+++.+.||.+.+++.....+... .+.....++ .+.++ ++..++..+.++.+.++|+.
T Consensus 152 -~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 152 -GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp -TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred -CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEec
Confidence 2334667888767888888999999999876333331 122222222 22223 56667777788999999987
Q ss_pred CCc--eeeeeeccc----------ceeeeEEEEEecCCCeEEEecC-----------CCeEEEEEeecCceEEEEecccc
Q 017773 263 DSR--VIRTYKGHV----------NNRNFVGLSVWRHGGLLGCGSE-----------TNQVFVYDVRWGEPVWVHDFEPV 319 (366)
Q Consensus 263 ~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~ 319 (366)
... .+..+.... .....++++ |+++.++++.. .+.|.+||+.+++.+..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~--~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--- 304 (361)
T 2oiz_A 230 GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH--RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--- 304 (361)
T ss_dssp SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE--TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---
T ss_pred CCCceecccccccCccccccccccCCeeEEEEe--cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---
Confidence 543 222221100 111124444 99887776532 35899999999998887742
Q ss_pred cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 320 TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 320 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+. +.+++|+| ||++|++++. +.|.+||.+++
T Consensus 305 -----~~--p~~ia~sp---dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 305 -----RD--ALSMTIDQ---QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp -----TT--CCEEEEET---TTTEEEEECS-SCEEEEECSSS
T ss_pred -----CC--eeEEEECC---CCCEEEEeCC-CeEEEEECCCC
Confidence 23 89999999 8889998886 99999999876
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=3e-17 Score=136.34 Aligned_cols=238 Identities=13% Similarity=0.167 Sum_probs=171.2
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecC-----CCCceeeEEec-cCCCceEEEec-CCCcEEEe
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEH-----GGRRVWSVDYS-KGDPVLGASGS-DDGTMQMW 170 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~v~~i~~~-~~~~~l~~~~~-~dg~v~~~ 170 (366)
..+.+++++++ ++++++...++.|.+||.+ ++....+... ....+..+++. +++. ++++.. .++.|.+|
T Consensus 30 ~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 30 TEPSGVAVNAQ--NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIY 105 (286)
T ss_dssp SCEEEEEECTT--CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEE
T ss_pred CCCceEEECCC--CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEE
Confidence 45889999998 8888888889999999987 5555554321 11267899995 5554 435553 37899999
Q ss_pred eCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--cccCcEEEEEEc-CCCEE
Q 017773 171 DPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--GHRKTVTYIRFL-DVDTL 247 (366)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l 247 (366)
|.. ++.+..+.. .+...+..++++|+| +++++...++.|++||... +.+..+. .+...+..++++ +++++
T Consensus 106 d~~---g~~~~~~~~-~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 106 NQY---GQFVRKFGA-TILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp CTT---SCEEEEECT-TTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred CCC---CcEEEEecC-ccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 943 666666543 233478999999998 6888777889999999654 3444443 344568899998 77777
Q ss_pred EEEeCCCcEEEEecCCCceeeeeeccc--ceeeeEEEEEecCCCeEEEecCCC-eEEEEEeecCceEEEEecccccccCC
Q 017773 248 VTAGTDGCLKLWNVNDSRVIRTYKGHV--NNRNFVGLSVWRHGGLLGCGSETN-QVFVYDVRWGEPVWVHDFEPVTAAGS 324 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~ 324 (366)
++...++.|++||. +++.+..+..+. ..+..++++ ++|+++++...++ .|.+||. +++.+..+... .
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d--~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------~ 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGIN--SNGEILIADNHNNFNLTIFTQ-DGQLISALESK------V 248 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEEC--TTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------S
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEEC--CCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------C
Confidence 77778999999997 455666665432 344455555 9999888888776 9999995 56666555321 1
Q ss_pred CCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 325 ERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 325 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
....+.+++++| +|+++++ +.|+.|++|+...
T Consensus 249 ~~~~~~~i~~~~---~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KHAQCFDVALMD---DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCSCEEEEEEET---TTEEEEE-ETTTEEEEEECSC
T ss_pred CCCcceeEEECC---CCcEEEE-CCCCeEEEEEccc
Confidence 223478999999 8887777 5699999999865
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=4.9e-18 Score=157.84 Aligned_cols=283 Identities=10% Similarity=0.012 Sum_probs=181.3
Q ss_pred CCCceEEEEECCCCCEEEEe--ecCCeEEEEEceecccccceeeeecCceeceeeeecCCcee---------EEEEe--c
Q 017773 41 VSDSIGVIEFDPSDSVFATG--GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLS---------SLKWK--P 107 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~ 107 (366)
|...+..++|++++-+++.. +.++...||....+... ..+..+ ...+. ...|+ |
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~~~----------~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE---ESALPA----------PWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE---EESSCT----------TCCBCCCGGGTCCCCEEEECCS
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc---ceeCCC----------CccccccccccCCccceeeeec
Confidence 78899999999887777776 56889999996332211 122222 22233 45566 8
Q ss_pred CCCCcE-EEEEc-CCCcEEEEeCC--C-CceeEeeec-----CCCCceeeEEeccCCCceEEEecCC----------CcE
Q 017773 108 GTSGRV-LGSGD-YDGVVMEYDLE--K-KVPIFERDE-----HGGRRVWSVDYSKGDPVLGASGSDD----------GTM 167 (366)
Q Consensus 108 ~~~~~~-l~~~~-~dg~i~iw~~~--~-~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~~d----------g~v 167 (366)
+ |+. |+.++ .+..|.++++. . +. ...+.. +.. .+.+++|+|+|+.| ++++.+ ..|
T Consensus 89 D--g~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~-~~~~~~~spDg~~l-~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 89 A--GGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGL-RWADPVLLPERGEV-WCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp S--SSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCE-EEEEEEEETTTTEE-EEEEEEECSSSTTCEEEEE
T ss_pred C--CCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCc-cccCcEECCCCCEE-EEEEecccCCCCCCceeEE
Confidence 8 877 66554 35677777776 3 43 333433 333 78899999999988 555555 579
Q ss_pred EEeeCCCCC------CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC--------CeEEEEecCC-C--CCCeeEee
Q 017773 168 QMWDPRCDG------GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD--------KKAYAYDVRK-M--VDPVLVFD 230 (366)
Q Consensus 168 ~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~-~--~~~~~~~~ 230 (366)
++||+. + ++. ..+.. .+...+..++|+|+| +.|+.++.+ ..|++||+.. + .+......
T Consensus 164 ~~~~~~--~~~~~~~~~~-~~l~~-~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 164 AAVPLD--GSAAADRSAV-RELSD-DAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEETT--STTTTCGGGS-EESSC-SCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEECC--CCccccCCce-eEEEe-cCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 999998 4 333 33320 233477889999999 677666544 3799999984 3 12333334
Q ss_pred cccCcEEEEEEc-CCCEEEEEeCCC--cEEEEecCCCceeeeeecccce--------eeeEEEEEecCCCeEEEecCCCe
Q 017773 231 GHRKTVTYIRFL-DVDTLVTAGTDG--CLKLWNVNDSRVIRTYKGHVNN--------RNFVGLSVWRHGGLLGCGSETNQ 299 (366)
Q Consensus 231 ~~~~~v~~~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~ 299 (366)
.|...+..+.|+ ++++++++..++ .|.+||+.+++.......+... +..+ .++|+++++++++. +.
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~--~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF--APLANGLIAVVHGK-GA 315 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE--EECTTSCEEEEEBS-SS
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceE--eEeCCCEEEEEEEc-Cc
Confidence 456889999999 888888888888 6667776666654333332221 2233 44489999999998 99
Q ss_pred EEEEEee--cCceEEEEecccccccCCCCceeeEE-EeeccCCCceEEEEeCCCCcEEEE--Eeccc
Q 017773 300 VFVYDVR--WGEPVWVHDFEPVTAAGSERGFVSSV-CWRRVGEDECTLVAGGSDGLLHVF--VGKKK 361 (366)
Q Consensus 300 i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~l~s~~~dg~i~iw--~~~~~ 361 (366)
+++|.++ +++ +..+ ..|...+..+ ++++ +...+++++.+....+| ++.++
T Consensus 316 ~~l~~~d~~~~~-~~~l--------~~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 316 AVLGILDPESGE-LVDA--------AGPWTEWAATLTVSG---TRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp CEEEEEETTTTE-EEEC--------CSSCCEEEEEEEEET---TEEEEEEEETTEEEEEEEEETTTC
T ss_pred cEEEEEECCCCc-EEEe--------cCCCCeEEEEEecCC---CEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999665 343 3333 3356667776 5543 54555666666555555 54443
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=4e-17 Score=138.34 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=175.4
Q ss_pred CCceEEEEECCCCCEEEEeecC------------------------CeEEEEEceecccccceeeeecCceeceeeeecC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIA------------------------RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTP 97 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (366)
-+.+.+++++|+|+++++...+ +.|.+||..+++... .. +. .+-
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~-~~--------~~~ 90 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SS-GK--------NLF 90 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EE-CT--------TTC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---cc-CC--------Ccc
Confidence 4569999999999999888766 468999887655422 11 11 112
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-eeEeee---------cCCCCceeeEEeccCCCceEEEec-CCCc
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-PIFERD---------EHGGRRVWSVDYSKGDPVLGASGS-DDGT 166 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~---------~~~~~~v~~i~~~~~~~~l~~~~~-~dg~ 166 (366)
.....++++|+ |+++++...++.|++|+.+... .+..+. .+.. ....++++|++..++++.+ .++.
T Consensus 91 ~~p~gia~d~~--g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~-~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 91 YLPHGLSIDTD--GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC-QPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp SSEEEEEECTT--SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS-SEEEEEECTTTCCEEEEECSSCCE
T ss_pred CCceEEEECCC--CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC-CCcEEEEeCCCCeEEEEeCCCCCe
Confidence 35789999998 9999998889999999986552 444442 2222 6889999994444447765 6899
Q ss_pred EEEeeCCCCCCceeEeecCCC--------CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee--cccCcE
Q 017773 167 MQMWDPRCDGGKCVSTVQPSA--------SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD--GHRKTV 236 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v 236 (366)
|++||.. ++.+..+...+ +...+..++++|++..++++...++.|++||..++ +.+..+. .+...+
T Consensus 168 I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 168 IVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNV 243 (329)
T ss_dssp EEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCE
T ss_pred EEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCc
Confidence 9999954 66666664222 22348999999984488888888999999999865 5666653 345567
Q ss_pred EEEEEcCCCEEEEE-------eCCCcEEEEecCCCceeeeee---cccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 237 TYIRFLDVDTLVTA-------GTDGCLKLWNVNDSRVIRTYK---GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 237 ~~~~~~~~~~l~~~-------~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
..++++++..+.+. ..+..|++||..+++.+..+. .+......++++ |+|.++++...++.|++|++.
T Consensus 244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~--~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS--EDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC--TTSEEEEEESSSCCEEEEEEE
T ss_pred ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC--CCCCEEEEECCCCEEEEEeCC
Confidence 77777653333333 344589999999999888874 444445566665 999888999999999999987
Q ss_pred c
Q 017773 307 W 307 (366)
Q Consensus 307 ~ 307 (366)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=1.3e-17 Score=141.71 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=181.4
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|.+++|+|++..++..+.++.++.|.-.. ...+.. +...+.+++|+|+ +++++++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~~~~--g~l~~~~~~~~ 66 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAEP------WLEISK----------KGLQLEGLNFDRQ--GQLFLLDVFEG 66 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECEE------EEEEES----------SCCCEEEEEECTT--SCEEEEETTTC
T ss_pred ccccceeeecCCccceeEEeecccCcccccce------eEEEec----------cCccccCcEECCC--CCEEEEECCCC
Confidence 45578889999988777777788888883221 112222 2235789999998 88888888899
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC----CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD----GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
.|.+||.++++.......+.. .+.+++++++++.+ ++...+ +.|.+||.. .+.....+........+.++++
T Consensus 67 ~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~dg~l~-v~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVSHKA-NPAAIKIHKDGRLF-VCYLGDFKSTGGIFAATEN--GDNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp EEEEECTTTCCEEEEEECSSS-SEEEEEECTTSCEE-EEECTTSSSCCEEEEECTT--SCSCEEEECSSSSCCCEEEEEE
T ss_pred EEEEEeCCCCcEEEEeeCCCC-CcceEEECCCCcEE-EEeCCCCCCCceEEEEeCC--CCEEEEEEccCccCCcccceEE
Confidence 999999988876554433434 79999999998755 665555 689999988 4444333332223457999999
Q ss_pred cCCCCcEEEEEec------CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeCCCcEEEEecCC-Cceee
Q 017773 198 HPFGSSLVAAGCA------DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGTDGCLKLWNVND-SRVIR 268 (366)
Q Consensus 198 ~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~iwd~~~-~~~~~ 268 (366)
+|+| .++++... .+.|+.+|..+. ....+..+...+..++|+ +++.+ ++...++.|.+||+.+ +..+.
T Consensus 143 d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 143 DSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp CTTS-CEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred CCCC-CEEEEeccccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence 9998 66666543 356777776543 233333344567889998 77755 4555678999999964 33332
Q ss_pred ee--------ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCC
Q 017773 269 TY--------KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGED 340 (366)
Q Consensus 269 ~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 340 (366)
.+ .++ ..+..+++. ++|+++++...++.|.+||. +++.+..+..+. ...+|...+.+++|+| |
T Consensus 220 ~~~~~~~~~~~~~-~~~~~i~~d--~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~--~~~g~~~~~~~~~~~~---d 290 (333)
T 2dg1_A 220 PFGATIPYYFTGH-EGPDSCCID--SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG--RDEGHMLRSTHPQFIP---G 290 (333)
T ss_dssp EEEEEEEEECCSS-SEEEEEEEB--TTCCEEEEEETTTEEEEECT-TSCEEEEEECTT--GGGTCSCBCCEEEECT---T
T ss_pred cccceEEEecCCC-CCCCceEEC--CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC--CccccccCcceEEECC---C
Confidence 21 111 233445554 99998888877889999998 566665554221 0012333688999998 7
Q ss_pred ceEEEEeCCC
Q 017773 341 ECTLVAGGSD 350 (366)
Q Consensus 341 ~~~l~s~~~d 350 (366)
+..|+.++.+
T Consensus 291 g~~L~v~~~~ 300 (333)
T 2dg1_A 291 TNQLIICSND 300 (333)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEeCc
Confidence 6566555444
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.6e-17 Score=156.00 Aligned_cols=313 Identities=10% Similarity=0.012 Sum_probs=186.8
Q ss_pred cceeeeeecCCCceeeecCCCC-ccCCCceEEEEECCCCCEEEEeecC---------CeEEEEEceecccccceeeeecC
Q 017773 17 ERARCEWDFNLRTTVSSSSSPN-AAVSDSIGVIEFDPSDSVFATGGIA---------RKIRIYNIKSVLVDHPVVAVVDH 86 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~-~~h~~~i~~~~~s~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~~ 86 (366)
+..+..|+..++.......... ..+......++|||||++|+.++.+ +.+.+||+.+++...
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-------- 106 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------- 106 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--------
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE--------
Confidence 6677888887766433222111 1122234558999999999998875 567799998865432
Q ss_pred ceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee-cCCC----------------CceeeEE
Q 017773 87 SKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD-EHGG----------------RRVWSVD 149 (366)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~----------------~~v~~i~ 149 (366)
+..|...+...+|+|+ |+.||.+. ++.|++|++.+++...... ++.. .....+.
T Consensus 107 ------l~~~~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 107 ------EERIPNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp ------SSCCCTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ------cccCCCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 1223456899999999 99998885 7899999998876544222 2221 0123589
Q ss_pred eccCCCceEEEecCCC-----------------------------------cEEEeeCCCCC---Cc--eeEeecCC---
Q 017773 150 YSKGDPVLGASGSDDG-----------------------------------TMQMWDPRCDG---GK--CVSTVQPS--- 186 (366)
Q Consensus 150 ~~~~~~~l~~~~~~dg-----------------------------------~v~~~d~~~~~---~~--~~~~~~~~--- 186 (366)
|+|||+.|++....++ .|++||+. + ++ ....+...
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~--~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD--SLSSVTNATSIQITAPASM 255 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT--SCCSSSCCCEEEECCCHHH
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC--CCCCCCcceEEEecCCccC
Confidence 9999999844322222 47788887 4 32 23333321
Q ss_pred -CCCCCeEEEEEcCCCCcEEEEEec----CCeEEEEecCCCC-----CCeeEe--ecccCcEE-----EEEEc-CCCEEE
Q 017773 187 -ASRSAVCCVEFHPFGSSLVAAGCA----DKKAYAYDVRKMV-----DPVLVF--DGHRKTVT-----YIRFL-DVDTLV 248 (366)
Q Consensus 187 -~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-----~~~~~~--~~~~~~v~-----~~~~~-~~~~l~ 248 (366)
++...+..++|+|+| +.++.... +..|++||+.++. .....+ ..|...+. ...|+ +|+.|+
T Consensus 256 ~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (740)
T ss_dssp HTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence 255679999999998 55555432 3379999998873 012222 44555444 67899 888776
Q ss_pred -EEe-CCC--cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE-EecC----CCeEEEEEeec--CceEEEEecc
Q 017773 249 -TAG-TDG--CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG-CGSE----TNQVFVYDVRW--GEPVWVHDFE 317 (366)
Q Consensus 249 -~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----dg~i~iwd~~~--~~~~~~~~~~ 317 (366)
..+ .+| .|.+||...++.. .+......+..+ +. ++++.|+ ++.. .+...||.+.. ++....+...
T Consensus 335 ~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~-~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 335 KIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGI-EA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp EEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEE-EE--ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred EEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEE-EE--EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 555 344 5888898776554 444333333332 22 3455444 4444 34456665543 2221122110
Q ss_pred cccccCCCCceeeEEEeeccCCCceEEEEeCCC---CcEEEEEecc
Q 017773 318 PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD---GLLHVFVGKK 360 (366)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~ 360 (366)
..+.......+.|+| ++++++..... ..+.+++..+
T Consensus 411 ----~~~~~~~~~~~~~S~---dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 411 ----LNPERCQYYSVSFSK---EAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp ----TSTTTBCBEEEEECT---TSSEEEEEECSBSSCEEEEEETTT
T ss_pred ----cCCCCCceEEEEECC---CCCEEEEEeCCCCCCEEEEEECCC
Confidence 012345688899999 77766544322 3566776654
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.80 E-value=2.6e-15 Score=125.26 Aligned_cols=282 Identities=9% Similarity=-0.057 Sum_probs=187.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+...+.+++++++|+++++...++.|.+|+.. +... ..... .+...+.++++.++ +.++++...+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~----~~~~~--------~~~~~~~~i~~~~~--g~l~v~~~~~ 77 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT----EYPLP--------TPDAKVMCLTISSD--GEVWFTENAA 77 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE----EEECS--------STTCCEEEEEECTT--SCEEEEETTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE----EecCC--------cccCceeeEEECCC--CCEEEeCCCC
Confidence 45679999999999987776667899999976 3221 11100 11245889999998 8888887778
Q ss_pred CcEEEEeCCCCceeEeeec-CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDE-HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|..|+.. ++. ..+.. .....+.++++.+++..+ ++...++.|..||.. ++.. .+........+..+++.+
T Consensus 78 ~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~-v~~~~~~~i~~~d~~---g~~~-~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 78 NKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIW-FTEMNGNRIGRITDD---GKIR-EYELPNKGSYPSFITLGS 150 (299)
T ss_dssp TEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEE-EEETTTTEEEEECTT---CCEE-EEECSSTTCCEEEEEECT
T ss_pred CeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEE-EEecCCceEEEECCC---CCEE-EecCCCCCCCCceEEEcC
Confidence 899999986 332 22221 122378899999987655 666668899999974 3322 222222344789999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeE-eecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeee-eecccce
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLV-FDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT-YKGHVNN 276 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~ 276 (366)
+| .++++...++.|..||. ++ +.... .......+..+++. ++.++++...++.|.+||. +++.... ...+...
T Consensus 151 ~g-~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 226 (299)
T 2z2n_A 151 DN-ALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR 226 (299)
T ss_dssp TS-CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CC-CEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCC
Confidence 98 67777767789999998 44 23222 23334567889998 7777777667889999998 6653321 2222334
Q ss_pred eeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEE
Q 017773 277 RNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVF 356 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw 356 (366)
+..+++. ++|+++++...++.|..||. +++ +..+.. ..+...+.++++ + ++.++++.. .+.|..+
T Consensus 227 ~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~------~~~~~~~~~i~~-~---~g~l~v~~~-~~~l~~~ 291 (299)
T 2z2n_A 227 PHAITAG--AGIDLWFTEWGANKIGRLTS-NNI-IEEYPI------QIKSAEPHGICF-D---GETIWFAME-CDKIGKL 291 (299)
T ss_dssp EEEEEEC--STTCEEEEETTTTEEEEEET-TTE-EEEEEC------SSSSCCEEEEEE-C---SSCEEEEET-TTEEEEE
T ss_pred ceeEEEC--CCCCEEEeccCCceEEEECC-CCc-eEEEeC------CCCCCccceEEe-c---CCCEEEEec-CCcEEEE
Confidence 4455554 89987777767889999998 453 233322 223467899999 7 777777765 5667777
Q ss_pred EecccCC
Q 017773 357 VGKKKPL 363 (366)
Q Consensus 357 ~~~~~~l 363 (366)
+.+++.+
T Consensus 292 ~~~~~~~ 298 (299)
T 2z2n_A 292 TLIKDNM 298 (299)
T ss_dssp EEC----
T ss_pred EcCcccC
Confidence 8776543
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=1.4e-16 Score=149.06 Aligned_cols=242 Identities=9% Similarity=0.004 Sum_probs=165.2
Q ss_pred ceeEEEEecCCCCcEEEEEcCCC-----cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCc-------
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDG-----VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGT------- 166 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~------- 166 (366)
.+..++|+|+ |++|+.+..++ .|++||+.+++.......+. .+..++|+|+++.+ +.++.++.
T Consensus 126 ~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~--~~~~~~wspDg~~l-~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 126 ALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGM-FYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEECTT--SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEE-EEEECCCCSSCCSSS
T ss_pred EEEEEEECCC--CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc--ccceEEEEeCCCEE-EEEEECCcccccccc
Confidence 5889999999 99988765433 89999999988765433222 36789999999998 55555544
Q ss_pred ---------EEEeeCCCCCCc--eeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-----CCeEEEEecCC------CCC
Q 017773 167 ---------MQMWDPRCDGGK--CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-----DKKAYAYDVRK------MVD 224 (366)
Q Consensus 167 ---------v~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~ 224 (366)
|++|++. +++ ....+....+...+..+.|+|+| +.|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~--t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLG--TDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CCCCCCCCEEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred ccccCCCCEEEEEECC--CCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 9999998 443 23333433445568899999999 55555543 57899999986 422
Q ss_pred CeeEeecccCcEEEEEEc-CCCEEEEEeCC----CcEEEEecCCCc--eeeeeecccc--eeeeEEEEEecCCCeEEEec
Q 017773 225 PVLVFDGHRKTVTYIRFL-DVDTLVTAGTD----GCLKLWNVNDSR--VIRTYKGHVN--NRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 225 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~iwd~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 295 (366)
....+..+...+... |+ +++.|+..+.+ +.|.+||+.++. ....+..+.. .+..+.+. +++.++++..
T Consensus 278 ~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~lv~~~~ 354 (710)
T 2xdw_A 278 KWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV--RSNFLVLCYL 354 (710)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE--TTTEEEEEEE
T ss_pred ceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE--cCCEEEEEEE
Confidence 456666666666554 55 77777665543 369999998764 2345555544 34444444 7888888888
Q ss_pred CCCe--EEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEE-Ee---CCCCcEEEEEecccC
Q 017773 296 ETNQ--VFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLV-AG---GSDGLLHVFVGKKKP 362 (366)
Q Consensus 296 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-s~---~~dg~i~iw~~~~~~ 362 (366)
.|+. |.+|++.+++....+. .+.+.+..++++| ++..|+ +. ...+.|+.||+.++.
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~--------~~~~~v~~~~~s~---d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFP--------LEVGSVVGYSGQK---KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEEC--------CCSSEEEEEECCT---TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEecC--------CCCceEEEEecCC---CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8885 4555655677655553 2467788999998 665554 22 345789999987755
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=9.7e-16 Score=137.94 Aligned_cols=278 Identities=12% Similarity=-0.017 Sum_probs=197.0
Q ss_pred CCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCC--
Q 017773 52 PSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE-- 129 (366)
Q Consensus 52 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-- 129 (366)
|.+.++++...++.|.++|..+.+... .+... ..+..+.|+|+ |+++++++.++.|.+||+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~---~i~~g-----------~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-----------YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE---EEECS-----------SCEEEEEECTT--SCEEEEEETTSEEEEEETTSS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEE---EEeCC-----------CCccceEECCC--CCEEEEEcCCCeEEEEECCCC
Confidence 445577777788999999998865543 22211 24678999999 9999999999999999996
Q ss_pred CCceeEeeecCCCCceeeEEec----cCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC--------C-CCCeEEEE
Q 017773 130 KKVPIFERDEHGGRRVWSVDYS----KGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA--------S-RSAVCCVE 196 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~--------~-~~~i~~~~ 196 (366)
+++.+.++.... ....++|+ |+|++++++...++.+.++|.. +.+.+..+...+ | ...+..+.
T Consensus 229 t~~~v~~i~~G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~--t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 229 EPTTVAEIKIGS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE--TLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp SCCEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT--TCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred CCcEeEEEecCC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECC--CCcEEEEEeccccccccccccCCCceEEEE
Confidence 777777776644 56899999 6999997777778999999988 788887776432 1 12677889
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecCCCceeeeeec-c
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVNDSRVIRTYKG-H 273 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~ 273 (366)
.++++..+++....+|.|.++|....................+.|+ ++++|+++. .++.|.++|+.+++.+..+.. .
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 9998867777777789999999876522222122233456788898 888876655 678999999999988777654 2
Q ss_pred ccee--eeEEEEEecCCC-eEEEec-CCCeEEEEEeec-------CceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 274 VNNR--NFVGLSVWRHGG-LLGCGS-ETNQVFVYDVRW-------GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 274 ~~~~--~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
..+- ....| ++|++. +.+++. .++.|.++|..+ .+.+..+... ...-..+..+| +++
T Consensus 385 ~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--------g~g~~~i~~~p---~~~ 452 (567)
T 1qks_A 385 QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--------GGGSLFIKTHP---NSQ 452 (567)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--------CSCCCCEECCT---TCS
T ss_pred cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--------CCCCEEEEeCC---CCC
Confidence 1111 12333 348744 444543 468999999987 4555555421 12223467888 777
Q ss_pred EEEEeCC-------CCcEEEEEeccc
Q 017773 343 TLVAGGS-------DGLLHVFVGKKK 361 (366)
Q Consensus 343 ~l~s~~~-------dg~i~iw~~~~~ 361 (366)
+|..... .++|.++|+.+.
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eEEEecCCCCCcccCceEEEEECCcc
Confidence 8877653 358999998765
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.79 E-value=9.7e-17 Score=149.72 Aligned_cols=286 Identities=8% Similarity=-0.058 Sum_probs=177.3
Q ss_pred CCCCCEEEEeecCC---eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE-----EEcCCCc
Q 017773 51 DPSDSVFATGGIAR---KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG-----SGDYDGV 122 (366)
Q Consensus 51 s~~~~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-----~~~~dg~ 122 (366)
+|+|++++....++ .-.||-........ ..+..... ...+|...+..++|+|+ |++|+ .|+.+..
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~l~d~~~---~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE--KVLLDPNG---WSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAV 148 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCC--EEEECGGG---SSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc--EEEEchHH---hccCCCEEEEEEEECCC--CCEEEEEECCCCCceEE
Confidence 37888777766543 34556544211111 11111100 01123346899999999 99988 4455678
Q ss_pred EEEEeCCCCcee-EeeecCCCCceeeEEeccCCCceEEEecCCCc-------------EEEeeCCCCCCceeEeecCCCC
Q 017773 123 VMEYDLEKKVPI-FERDEHGGRRVWSVDYSKGDPVLGASGSDDGT-------------MQMWDPRCDGGKCVSTVQPSAS 188 (366)
Q Consensus 123 i~iw~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~-------------v~~~d~~~~~~~~~~~~~~~~~ 188 (366)
|++||+.+++.+ ....... ....++|+|+++.+ +.++.|.. |++|++.+...+....+....+
T Consensus 149 i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l-~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGF-YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEE-EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred EEEEECCCCCCcCCcccCcc--cccceEEecCCCEE-EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 999999998764 2111111 22689999999988 66666554 9999998322223344444455
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCC----eEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEe---CCCcEEEEec
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADK----KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAG---TDGCLKLWNV 261 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~i~iwd~ 261 (366)
...+..+.|+|+| ++|+.++.++ .|+++|..++ ....+..+...+....++++++++.+. .++.|.+||+
T Consensus 226 ~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 226 PTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp TTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBT
T ss_pred CEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeC
Confidence 5678899999999 5555555444 6777765443 345555566666666667555444443 2578999999
Q ss_pred CCCce--eeeeecc--cceeeeEEEEEecCCCeEEEecCCCeEEEEEee-cCceEEEEecccccccCCCCceeeEEEeec
Q 017773 262 NDSRV--IRTYKGH--VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR-WGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 262 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
.+++. ...+..+ ...+..+++ + ++.++++...|+..++|.+. +++....+.+ .+.+.+..++++|
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~--~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSI--V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL-------PGVGAASNLMGLE 372 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEE--E-TTEEEEEEEETTEEEEEEEETTCCEEEECCC-------SSSSEECCCBSCT
T ss_pred CCCCccCCeEEecCCCCCeEEEEEE--E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC-------CCCeEEEEeecCC
Confidence 87653 2344433 233444444 3 67888899999999998876 4554443322 1256788889998
Q ss_pred cCCCceEEE----EeCCCCcEEEEEecccC
Q 017773 337 VGEDECTLV----AGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 337 ~~~~~~~l~----s~~~dg~i~iw~~~~~~ 362 (366)
++..|+ +....+.|++||+.++.
T Consensus 373 ---d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 373 ---DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ---TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ---CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666666 33446789999987654
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=3.4e-16 Score=130.63 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=165.4
Q ss_pred CCceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 97 PAKLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
.....+++|+|+ ++ +++++..++.|..|+..++ ...+..+.. .+.++++++++..+ ++...++.|.+||..
T Consensus 27 ~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~~l~~~~dg~l~-v~~~~~~~i~~~d~~-- 98 (296)
T 3e5z_A 27 FTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-HQNGHCLNKQGHLI-ACSHGLRRLERQREP-- 98 (296)
T ss_dssp CSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-SEEEEEECTTCCEE-EEETTTTEEEEECST--
T ss_pred CccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-CcceeeECCCCcEE-EEecCCCeEEEEcCC--
Confidence 345789999998 87 7888888999999999887 555555554 78999999998855 666667899999986
Q ss_pred CCceeEeecC--CCCCCCeEEEEEcCCCCcEEEE----Ee-------------cCCeEEEEecCCCCCCeeEeecccCcE
Q 017773 176 GGKCVSTVQP--SASRSAVCCVEFHPFGSSLVAA----GC-------------ADKKAYAYDVRKMVDPVLVFDGHRKTV 236 (366)
Q Consensus 176 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~v 236 (366)
+++....... ......+..++++|+| +++++ |+ ..+.|+.++.. + ....+..+....
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--~~~~~~~~~~~~ 174 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--TLSAPIRDRVKP 174 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--CEEEEECCCSSE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C--CEEEeecCCCCC
Confidence 4554333221 1112356789999998 67776 33 13466666655 2 344445566677
Q ss_pred EEEEEc-CCCEEEEEeCCCcEEEEecC-CCce---eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 237 TYIRFL-DVDTLVTAGTDGCLKLWNVN-DSRV---IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 237 ~~~~~~-~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
..++|+ +++.+++.+.++.|.+||+. +++. ...+..+...+..+++. ++|+++++. ++.|.+||.. ++.+
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD--AGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB--TTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC--CCCCEEEEc--CCeEEEECCC-CCEE
Confidence 899999 88888777788999999987 4443 23332233334455555 999877766 7889999986 7666
Q ss_pred EEEecccccccCCCCceeeEEEee-ccCCCceEEEEeCCCCcEEEEEecccCCC
Q 017773 312 WVHDFEPVTAAGSERGFVSSVCWR-RVGEDECTLVAGGSDGLLHVFVGKKKPLS 364 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~~l~ 364 (366)
..+.. +.. +.+++|. | +++.|+.++.++ +.-++.+++.|.
T Consensus 250 ~~~~~--------~~~-~~~~~f~~~---d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 250 GRVLT--------PQT-TSNLCFGGP---EGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEEEC--------SSC-CCEEEEEST---TSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EEEEC--------CCC-ceeEEEECC---CCCEEEEEcCCe-EEEEEccccccc
Confidence 65542 334 8899994 6 777888887764 445556555543
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.5e-17 Score=154.61 Aligned_cols=257 Identities=13% Similarity=-0.036 Sum_probs=166.3
Q ss_pred eeecCCceeEEEEecCCCCcEEEEE--cCCCcEEEEeCCCCceeEeeecCCCCcee---------eEEec--cCCCc-eE
Q 017773 93 YICTPAKLSSLKWKPGTSGRVLGSG--DYDGVVMEYDLEKKVPIFERDEHGGRRVW---------SVDYS--KGDPV-LG 158 (366)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-l~ 158 (366)
+.+|...+..++|+++ ..+++.. +.++...||....+.....+..+.. .+. ...|+ |+++. ++
T Consensus 19 ~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 19 VASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPW-NVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC-CBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HhhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCc-cccccccccCCccceeeeecCCCeEEE
Confidence 3456678999999987 7777777 6688899998654544555655554 555 55565 99998 75
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecCCC---CCCCeEEEEEcCCCCcEEEEEecC----------CeEEEEecCCCC--
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQPSA---SRSAVCCVEFHPFGSSLVAAGCAD----------KKAYAYDVRKMV-- 223 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~-- 223 (366)
++...+..|.++++..........+.... +...+..++|+|+| +.|+.++.+ ..|++||+.+..
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 55555666777765400102233333211 45578899999999 677777665 589999998720
Q ss_pred --CCeeEee-cccCcEEEEEEc-CCCEEEEEeCC--------CcEEEEecC-CC---ceeeeeecccceeeeEEEEEecC
Q 017773 224 --DPVLVFD-GHRKTVTYIRFL-DVDTLVTAGTD--------GCLKLWNVN-DS---RVIRTYKGHVNNRNFVGLSVWRH 287 (366)
Q Consensus 224 --~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
.....+. .+...+..++|+ +|++|+.++.+ ..|.+||+. ++ +.......+...+..+.|+ ||
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s--pd 252 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA--PD 252 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC--TT
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC--CC
Confidence 1234444 556778889999 99999887755 379999998 56 3333334445566556655 99
Q ss_pred CCeEEEecCCC--eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 288 GGLLGCGSETN--QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 288 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
|+++++++.++ .|.+||+.+++...............-.-.+..++|+| +++++++++. +.++||.++
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~---~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA---NGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT---TSCEEEEEBS-SSCEEEEEE
T ss_pred CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC---CCEEEEEEEc-CccEEEEEE
Confidence 99888888888 55555555565432221000000000000156788888 8889999998 999999543
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=3e-16 Score=133.99 Aligned_cols=260 Identities=12% Similarity=0.023 Sum_probs=170.3
Q ss_pred CCceEEEEECCCCCEEEEee---------cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc
Q 017773 42 SDSIGVIEFDPSDSVFATGG---------IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR 112 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (366)
...+...++ ||+.++... .++.|.+|++.+++.. .+ ..+..++|+|+ |+
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l--------------~~~~~~~~SpD--g~ 71 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI--------------ENATMPRISPD--GK 71 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE--------------ESCEEEEECTT--SS
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec--------------ccCCCeEECCC--CC
Confidence 455777888 888777642 2567889998765421 11 14788999999 99
Q ss_pred EEEEEcCC---C--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC------------------------
Q 017773 113 VLGSGDYD---G--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD------------------------ 163 (366)
Q Consensus 113 ~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------------------------ 163 (366)
+|+.++.+ + .|.+|++.+++........ .+..++|+|+++.+++++..
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAK---NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---EEEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCC---CccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 88877643 2 4888898887655444332 28899999999988554432
Q ss_pred --CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC-------eEEEEecCCCCCCeeEeecccC
Q 017773 164 --DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-------KAYAYDVRKMVDPVLVFDGHRK 234 (366)
Q Consensus 164 --dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~ 234 (366)
...|.+||+. +++.+..+.. . .+..++|+|+| +++++..++ ...+|.+.++ ....+..+ .
T Consensus 149 ~~~~~l~~~d~~--~~~~~~~l~~---~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~l~~~-~ 217 (347)
T 2gop_A 149 GEKTTFWIFDTE--SEEVIEEFEK---P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG--KEEKMFEK-V 217 (347)
T ss_dssp -CEEEEEEEETT--TTEEEEEEEE---E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT--EEEEEEEE-E
T ss_pred CccceEEEEECC--CCeEEeeecC---C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC--ceEEeccC-c
Confidence 2568999998 5655344443 2 67889999997 666665432 3344444432 33444444 5
Q ss_pred cEEEEEEc-CCCEEEEEeCC--------CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 235 TVTYIRFL-DVDTLVTAGTD--------GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 235 ~v~~~~~~-~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
.+..+ + +++.|+.++.+ ..|.+|| +++.......+...+.. ...|+ ++ ++++++.++.+++| +
T Consensus 218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~-~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ-AKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE-EEEET-TE-EEEEEEETTEEEEE-E
T ss_pred ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC-ccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 55554 6 88888777644 3688888 55544444444455443 13455 77 88899999999999 8
Q ss_pred ecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcE-EEEEec
Q 017773 306 RWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLL-HVFVGK 359 (366)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i-~iw~~~ 359 (366)
.+++..... .+...|.+++|+| .++++++.++.. .||.++
T Consensus 290 ~~g~~~~~~---------~~~~~v~~~~~s~-----~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 290 WDGEIKPIA---------KGRHWIMGFDVDE-----IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ESSSEEEEE---------CSSSEEEEEEESS-----SEEEEEECSSSCCEEEEES
T ss_pred cCCceEEEe---------cCCCeEEeeeeeC-----cEEEEEcCCCChHHheEeC
Confidence 866543222 2367899999987 267777666654 777664
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=3.4e-16 Score=146.49 Aligned_cols=247 Identities=10% Similarity=0.038 Sum_probs=165.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCC-----eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIAR-----KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|...+..++|||||++||.+..++ .|++||+.+++.... .. .. ..+..++|+|+ |+.|+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~-~~-----------~~~~~~~wspD--g~~l~ 186 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL-ER-----------VKFSCMAWTHD--GKGMF 186 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE-EE-----------ECSCCEEECTT--SSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc-cC-----------cccceEEEEeC--CCEEE
Confidence 445689999999999998776543 899999988654321 11 11 12677999999 99998
Q ss_pred EEcCCCc----------------EEEEeCCCCcee--Eeeec--CCCCceeeEEeccCCCceEEEecC----CCcEEEee
Q 017773 116 SGDYDGV----------------VMEYDLEKKVPI--FERDE--HGGRRVWSVDYSKGDPVLGASGSD----DGTMQMWD 171 (366)
Q Consensus 116 ~~~~dg~----------------i~iw~~~~~~~~--~~~~~--~~~~~v~~i~~~~~~~~l~~~~~~----dg~v~~~d 171 (366)
.++.++. |++|++.+++.. ..+.. +.. .+..+.|+|++++++++... +..|++||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK-WMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT-CEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe-EEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 8877765 999999887532 22222 232 57899999999998555432 56899999
Q ss_pred CCCCC----Cc-eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC---CeEEEEecCCCCC-CeeEeecccC--cEEEEE
Q 017773 172 PRCDG----GK-CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD---KKAYAYDVRKMVD-PVLVFDGHRK--TVTYIR 240 (366)
Q Consensus 172 ~~~~~----~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~-~~~~~~~~~~--~v~~~~ 240 (366)
+.... +. ....+.. +...+.. .|+|+|..+++.+..+ +.|.+||+.++.. ....+..|.. .+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 342 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLID--NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA 342 (710)
T ss_dssp GGGSSSSSCSSCCCEEEEC--SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE
T ss_pred CcccccccCCccceEEeeC--CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE
Confidence 97200 21 2344432 2234444 5888885555554433 3799999987621 2344544544 678889
Q ss_pred Ec-CCCEEEEEeCCCc--EEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe----cCCCeEEEEEeecCc
Q 017773 241 FL-DVDTLVTAGTDGC--LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG----SETNQVFVYDVRWGE 309 (366)
Q Consensus 241 ~~-~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~ 309 (366)
|+ ++.++++...|+. |.+||+.+++.+..+..+...+..+++ +|++..++.. ...+.|+.||+.+++
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~--s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG--QKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC--CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec--CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 98 6667788888884 566777678777788777555554544 4888766532 345789999998876
No 184
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=3.5e-17 Score=142.01 Aligned_cols=239 Identities=15% Similarity=0.021 Sum_probs=156.9
Q ss_pred EEEecCCCCcEEEEEcC-CC--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 103 LKWKPGTSGRVLGSGDY-DG--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 103 ~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
.+|+|+ |++|+.++. ++ .|.+||+.+++.......+.. .+..+.|+|+++.| +.++.++.|++||+. +++.
T Consensus 41 ~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-~~~~~~~spdg~~l-~~~~~~~~l~~~d~~--~g~~ 114 (388)
T 3pe7_A 41 KCFTRD--GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-NTFGGFLSPDDDAL-FYVKDGRNLMRVDLA--TLEE 114 (388)
T ss_dssp CCBCTT--SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-CSSSCEECTTSSEE-EEEETTTEEEEEETT--TCCE
T ss_pred ccCCCC--CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-CccceEEcCCCCEE-EEEeCCCeEEEEECC--CCcc
Confidence 789999 998888876 66 488889998887666555543 55578899999998 777778899999999 6666
Q ss_pred eEeecCCCCCCCeEEE--EEcCCCCcEEEEE----------------------ecCCeEEEEecCCCCCCeeEeecccCc
Q 017773 180 VSTVQPSASRSAVCCV--EFHPFGSSLVAAG----------------------CADKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
........ ..+... .++|++ ..++.. ..+..|++||+.++ ....+..+...
T Consensus 115 ~~~~~~~~--~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~ 189 (388)
T 3pe7_A 115 NVVYQVPA--EWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG--ESTVILQENQW 189 (388)
T ss_dssp EEEEECCT--TEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC--CEEEEEEESSC
T ss_pred eeeeechh--hcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC--ceEEeecCCcc
Confidence 55555332 244333 348988 565532 23468999999886 34455556778
Q ss_pred EEEEEEc--CCCEEEEEeCC------CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecC-----CCeEEE
Q 017773 236 VTYIRFL--DVDTLVTAGTD------GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE-----TNQVFV 302 (366)
Q Consensus 236 v~~~~~~--~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i 302 (366)
+..+.|+ +++.|+....+ ..|.++|...++. ..+..+..........|+|||+.|+..+. +..|++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 8999998 46777766653 3788888765543 34443332112233445599998765432 124999
Q ss_pred EEeecCceEEEEecccccccCCCCce---eeEEEeeccCCCceEEEEe---------CCCCcEEEEEecccC
Q 017773 303 YDVRWGEPVWVHDFEPVTAAGSERGF---VSSVCWRRVGEDECTLVAG---------GSDGLLHVFVGKKKP 362 (366)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~l~s~---------~~dg~i~iw~~~~~~ 362 (366)
||+.+++.......+ ++... ...++|+| ||+.|+.. ..+..|++|+++++.
T Consensus 269 ~d~~~g~~~~l~~~~------~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 269 ADPETLENRQLTSMP------ACSHLMSNYDGSLMVG---DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp ECTTTCCEEEEEEEC------CEEEEEECTTSSEEEE---EECCC------------CCCCEEEEEETTTTE
T ss_pred EecCCCceEEEEcCC------CceeeeecCCCCeEcc---CCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 999988754433221 11000 12347999 88887754 456789999987654
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=2e-16 Score=147.54 Aligned_cols=245 Identities=12% Similarity=0.016 Sum_probs=162.2
Q ss_pred CCCceEEEEECCCCCEEE-----EeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFA-----TGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|...+..++|||||++|| .|+.+..|++||+.+++... ..+.. ......++|+|+ |+.|+
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~--------~~~~~~~~wspD--g~~l~ 183 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIE--------GGKYATPKWTPD--SKGFY 183 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBS--------CCTTCCCEECTT--SSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccC--------cccccceEEecC--CCEEE
Confidence 566799999999999999 45556789999999876531 00100 011267999999 99999
Q ss_pred EEcCCCc-------------EEEEeCCCCce----eEeeecCCCCceeeEEeccCCCceEEEecCC-C--cEEEeeCCCC
Q 017773 116 SGDYDGV-------------VMEYDLEKKVP----IFERDEHGGRRVWSVDYSKGDPVLGASGSDD-G--TMQMWDPRCD 175 (366)
Q Consensus 116 ~~~~dg~-------------i~iw~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g--~v~~~d~~~~ 175 (366)
.++.|.. |++|++.++.. +.....+.. .+..+.|+|+|++++++...+ + .|.++|..
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-- 260 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPT-TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-- 260 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTT-CEEEEEECTTSCCEEEEEEETTTEEEEEEECTT--
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCE-EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC--
Confidence 9887766 99999988762 222222333 688999999999985544333 2 56677654
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe---cCCeEEEEecCCCCC--CeeEeecc-cCcEEEEEEcCCCEEEE
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC---ADKKAYAYDVRKMVD--PVLVFDGH-RKTVTYIRFLDVDTLVT 249 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~l~~ 249 (366)
.++...... +...+....+ ++|. +++... .++.|.+||+.++.. ....+..+ ...+..++++++.++++
T Consensus 261 ~~~~~~l~~---~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~ 335 (695)
T 2bkl_A 261 EKDFRLLVK---GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLE 335 (695)
T ss_dssp CSSCEEEEE---CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEE
T ss_pred CCceEEeec---CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEE
Confidence 344333322 2224555556 6674 555544 358899999987621 13333333 45678888887778888
Q ss_pred EeCCCcEEEEecC-CCceeeeeecc-cceeeeEEEEEecCCCeEE----EecCCCeEEEEEeecCce
Q 017773 250 AGTDGCLKLWNVN-DSRVIRTYKGH-VNNRNFVGLSVWRHGGLLG----CGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 250 ~~~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~~~ 310 (366)
...|+..++|.+. +++.+..+..+ ...+..++++ |++..++ +....+.|++||+.+++.
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s--~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGL--EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSC--TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecC--CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8999988888665 45555666544 4444444444 8888777 334457899999988764
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.76 E-value=7.6e-15 Score=124.56 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=156.8
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+...+.+++|+|+|++++++..++.|.+||..+++... ... .+...+.+++|+|+ ++++++...+
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~---~~~----------~~~~~~~~i~~~~d--g~l~v~~~~~ 107 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFV----------SHKANPAAIKIHKD--GRLFVCYLGD 107 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEE----------CSSSSEEEEEECTT--SCEEEEECTT
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE---Eee----------CCCCCcceEEECCC--CcEEEEeCCC
Confidence 45667999999999988888888999999987654321 111 12346899999998 8888877666
Q ss_pred ----CcEEEEeCCCCceeEeee-cCCCCceeeEEeccCCCceEEEecC------CCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 121 ----GVVMEYDLEKKVPIFERD-EHGGRRVWSVDYSKGDPVLGASGSD------DGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 121 ----g~i~iw~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
+.|.+||.+++.....+. ......+.++++.|++..+ ++... .+.|..+|.. .++...... ..
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~---~~ 181 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY-FTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQ---NI 181 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE-EEECCCBTTBCCEEEEEECTT--SCCEEEEEE---EE
T ss_pred CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEE-EEeccccccCCCceEEEEeCC--CCEEEEeec---CC
Confidence 689999998876543332 1122378999999998765 55443 3456666655 333332221 12
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe--------ecccCcEEEEEEc-CCCEEEEEeCCCcEEEEe
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF--------DGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd 260 (366)
..+..++|+|++..++++...++.|++||+++.......+ .++ ..+..+++. +++++++...++.|.+||
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 2578999999984455666678899999996432332211 112 367789998 888777777789999999
Q ss_pred cCCCceeeeeecccc------eeeeEEEEEecCCCeEEEecCC
Q 017773 261 VNDSRVIRTYKGHVN------NRNFVGLSVWRHGGLLGCGSET 297 (366)
Q Consensus 261 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d 297 (366)
. +++.+..+..+.. .+..++++ |+++.|+.++.+
T Consensus 261 ~-~g~~~~~~~~~~~~~g~~~~~~~~~~~--~dg~~L~v~~~~ 300 (333)
T 2dg1_A 261 K-RGYPIGQILIPGRDEGHMLRSTHPQFI--PGTNQLIICSND 300 (333)
T ss_dssp T-TSCEEEEEECTTGGGTCSCBCCEEEEC--TTSCEEEEEEEC
T ss_pred C-CCCEEEEEEcCCCccccccCcceEEEC--CCCCEEEEEeCc
Confidence 8 5666667654432 45566665 898777655554
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=1.1e-15 Score=125.72 Aligned_cols=240 Identities=8% Similarity=-0.039 Sum_probs=163.5
Q ss_pred ceeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLG-SGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
...+++++++ +++++ +...++.|.+|+..+............ .+.++++.+++..+ ++.. ++.|.+||.. ..
T Consensus 25 ~p~~i~~~~~--g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g~l~-v~~~-~~~i~~~d~~--~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSA--GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY-QPQGLAVDGAGTVY-VTDF-NNRVVTLAAG--SN 97 (270)
T ss_dssp CEEEEEECTT--CCEEEEECSSSCEEEEECC-----EECCCCSCC-SCCCEEECTTCCEE-EEET-TTEEEEECTT--CS
T ss_pred CccceEECCC--CCEEEEccCCCCcEEEecCCCcccceEeeCCcC-CcceeEECCCCCEE-EEcC-CCEEEEEeCC--Cc
Confidence 4788999998 88777 547789999999866543322222222 67899999988744 5555 8899999987 33
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcE
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCL 256 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i 256 (366)
....+.. .....+..++++|+| .++++...++.|.+|+..+. ............+..+++. +++++++...++.|
T Consensus 98 -~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 98 -NQTVLPF-DGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp -CCEECCC-CSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred -eEeeeec-CCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEECCCCEE
Confidence 2333322 222478999999998 67777777899999986554 2222222233456788998 78877777778899
Q ss_pred EEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 257 KLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
.+||............+...+..+++. ++|.++++...++.|.+|+........ .. ..+...+.+++++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d--~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------~~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVD--EAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------FTGLNTPLAVAVDS 243 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEEC--TTCCEEEEETTTSCEEEECTTCSCCEE-CC-------CCSCSCEEEEEECT
T ss_pred EEEecCCCceEeecccCCCCceEEEEC--CCCCEEEEECCCCcEEEEcCCCCccee-ec-------cCCCCCceeEEECC
Confidence 999987765443322232334455555 999888888788999999986543322 11 12335689999999
Q ss_pred cCCCceEEEEeCCCCcEEEEEecccC
Q 017773 337 VGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 337 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
+|+++++...++.|+++++...+
T Consensus 244 ---~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 ---DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---TCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---CCCEEEEECCCCEEEEEcCCCcc
Confidence 88888999999999999987654
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=1.7e-15 Score=124.50 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=171.7
Q ss_pred CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc
Q 017773 53 SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 53 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 132 (366)
.+++|++++.++.|.+||.++++... .+..+. ...+.++.+.|+ |+++++ .++.|..||. +++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~---------~~~~~~~~~~pd--G~ilvs--~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEK---------GWECNSVAATKA--GEILFS--YSKGAKMITR-DGR 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE---EEECCT---------TCCCCEEEECTT--SCEEEE--CBSEEEEECT-TSC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCc---------cCCCcCeEECCC--CCEEEe--CCCCEEEECC-CCC
Confidence 45789999999999999998877654 222221 024788999998 998883 4678999999 888
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEeecCCC----CCCCeEEEEEcCCCCcEEEE
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVSTVQPSA----SRSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~ 207 (366)
.+..+..+....+.++.+.++++.+ ++.+. ++.+..+|.. ++.+..+.... +......+++.++| .++++
T Consensus 67 ~~W~~~~~~~~~~~~~~~~~dG~~l-v~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~ 141 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARILPDGNAL-VAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVP 141 (276)
T ss_dssp EEEEEECCTTCEEEEEEECTTSCEE-EEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEE
T ss_pred EEEEEcCCCCccccccEECCCCCEE-EEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCC-CEEEE
Confidence 8888887643478899999999988 55555 7777777754 67666665321 11245566788998 78999
Q ss_pred EecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccc------eeeeE
Q 017773 208 GCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN------NRNFV 280 (366)
Q Consensus 208 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~ 280 (366)
...++.|..||.. + +.+..+.... ....+... ++++++++..++.|..+|..+++.+.++..+.. .+..+
T Consensus 142 ~~~~~~v~~~d~~-G-~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 142 LFATSEVREIAPN-G-QLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp ETTTTEEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred ecCCCEEEEECCC-C-CEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 9899999999987 5 6777776543 34455666 888999988888999999999999988874321 13334
Q ss_pred EEEEecCCCeEEEecCC--------CeEEEEEe-ecCceEEEEe
Q 017773 281 GLSVWRHGGLLGCGSET--------NQVFVYDV-RWGEPVWVHD 315 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~ 315 (366)
+.. ++|.++++.... +..+++++ .+++.++.+.
T Consensus 219 ~~~--~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 219 FPL--QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EEC--TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred eEc--CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 444 899988887321 24467777 4788877764
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.5e-15 Score=124.89 Aligned_cols=240 Identities=8% Similarity=-0.033 Sum_probs=162.7
Q ss_pred ceEEEEECCCCCEEE-EeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 44 SIGVIEFDPSDSVFA-TGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
...+++++|+|++++ +...++.|.+|+..+..... . .. .+...+.++++.++ ++++++.. ++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----~-~~--------~~~~~p~~i~~~~~--g~l~v~~~-~~~ 88 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----L-PF--------NGLYQPQGLAVDGA--GTVYVTDF-NNR 88 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE----C-CC--------CSCCSCCCEEECTT--CCEEEEET-TTE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce----E-ee--------CCcCCcceeEECCC--CCEEEEcC-CCE
Confidence 789999999999777 54678899999875533211 0 00 11235788999998 88777666 889
Q ss_pred EEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCC
Q 017773 123 VMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGS 202 (366)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (366)
|.+||....... .+.......+.++++.+++..+ ++...++.|.+|+.. +....... ......+.+++++|+|
T Consensus 89 i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~-v~~~~~~~i~~~~~~--~~~~~~~~--~~~~~~p~~i~~~~~g- 161 (270)
T 1rwi_B 89 VVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVY-VADRGNNRVVKLAAG--SKTQTVLP--FTGLNDPDGVAVDNSG- 161 (270)
T ss_dssp EEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEE-EEEGGGTEEEEECTT--CCSCEECC--CCSCCSCCCEEECTTC-
T ss_pred EEEEeCCCceEe-eeecCCcCCCcceEECCCCCEE-EEECCCCEEEEEECC--CceeEeec--cccCCCceeEEEeCCC-
Confidence 999998766443 2322222378899999988744 666678899999865 33332221 1223367889999998
Q ss_pred cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEE
Q 017773 203 SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVG 281 (366)
Q Consensus 203 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (366)
+++++...++.|.+||.... ........+...+..+++. ++.++++...++.|.+||............+...+..++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~ 240 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA 240 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEE
T ss_pred CEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEE
Confidence 67777777889999998765 2222222233567899998 777777777788999999876543322222223345555
Q ss_pred EEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 282 LSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 282 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
+. ++|+++++...++.|+++++...+
T Consensus 241 ~~--~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VD--SDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EC--TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EC--CCCCEEEEECCCCEEEEEcCCCcc
Confidence 55 999988888899999999987654
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=2.2e-15 Score=123.83 Aligned_cols=218 Identities=12% Similarity=0.081 Sum_probs=163.7
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
+++|++++.++.|.+||.++++.+.++..+....+.++.+.|+|+.+ + +.++.|..||.. ++.+..+... ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~il-v--s~~~~V~~~d~~---G~~~W~~~~~-~~~ 77 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEIL-F--SYSKGAKMITRD---GRELWNIAAP-AGC 77 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEE-E--ECBSEEEEECTT---SCEEEEEECC-TTC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEE-E--eCCCCEEEECCC---CCEEEEEcCC-CCc
Confidence 78999999999999999999999999887652368899999999866 5 347789999975 7778877753 224
Q ss_pred CeEEEEEcCCCCcEEEEEec-CCeEEEEecCCCCCCeeEee------cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecC
Q 017773 191 AVCCVEFHPFGSSLVAAGCA-DKKAYAYDVRKMVDPVLVFD------GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~ 262 (366)
.+.++.+.|+| +++++.+. ++.|..+|.. + +.+..+. .+......++.. +++++++...++.|..||..
T Consensus 78 ~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDG-NALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEEECTTS-CEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccccEECCCC-CEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 78899999999 77777766 7788888863 3 4544443 122234455666 89999999999999999987
Q ss_pred CCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 263 DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
++.+.++.... ........ ++|++++++..++.|..+|..+|+.++.+...... ......+.+++..+ +|.
T Consensus 155 -G~~~w~~~~~~-~~~~~~~~--~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--~~~l~~~~~~~~~~---~G~ 225 (276)
T 3no2_A 155 -GQLLNSVKLSG-TPFSSAFL--DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--GVQLFFVAQLFPLQ---NGG 225 (276)
T ss_dssp -SCEEEEEECSS-CCCEEEEC--TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--SCCCSEEEEEEECT---TSC
T ss_pred -CCEEEEEECCC-CccceeEc--CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--CccccccccceEcC---CCC
Confidence 99998887653 23344444 89999999998899999999999999988532110 11223467777777 777
Q ss_pred EEEEe
Q 017773 343 TLVAG 347 (366)
Q Consensus 343 ~l~s~ 347 (366)
++++.
T Consensus 226 i~v~~ 230 (276)
T 3no2_A 226 LYICN 230 (276)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77776
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.74 E-value=7.6e-15 Score=124.14 Aligned_cols=270 Identities=8% Similarity=-0.038 Sum_probs=183.0
Q ss_pred ccceeeeeecCCCceeeecCCC--CccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 16 NERARCEWDFNLRTTVSSSSSP--NAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~--~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
++..+..++++++.+....... ..........+++.. ++++++...++.|.+||..+.+... .+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~---~i~~-------- 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVG---RITG-------- 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEE---EEEC--------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEE---EcCC--------
Confidence 4678888999988765432100 001234567788753 4556666667999999998876544 2211
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCC----ceeeEEeccCCCceEEEec-CCCcEE
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGR----RVWSVDYSKGDPVLGASGS-DDGTMQ 168 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~~~~~-~dg~v~ 168 (366)
......++++++ +.++++...++.|.+||+.+++....+...... ....+++ ++..++++.. .++.|.
T Consensus 83 ---~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 83 ---FTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRIL 155 (328)
T ss_dssp ---CSSEEEEEEEET--TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEE
T ss_pred ---CCCCcEEEEeCC--CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEE
Confidence 134788999998 765555547899999999999877766644310 3556777 3556645554 488999
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC----------CeEEEEecCCCCCCeeEeecc-cCcEE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD----------KKAYAYDVRKMVDPVLVFDGH-RKTVT 237 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~-~~~v~ 237 (366)
++|+. +++....+.... ....++++|+| ++++++..+ +.|.++|..+. +....+... .....
T Consensus 156 viD~~--t~~~~~~i~~g~---~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 156 KIDTE--TDKVVDELTIGI---QPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPS 228 (328)
T ss_dssp EEETT--TTEEEEEEECSS---CBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCE
T ss_pred EEECC--CCeEEEEEEcCC---CccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCce
Confidence 99998 777777776432 46788999998 666666544 78999999876 455455432 23678
Q ss_pred EEEEc-CCCEEEEEeCCCcEEEEecCCCceeee--eecccceeeeEEEEEec-CCCeEEEe----cCCCeEEEEEeecCc
Q 017773 238 YIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT--YKGHVNNRNFVGLSVWR-HGGLLGCG----SETNQVFVYDVRWGE 309 (366)
Q Consensus 238 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~ 309 (366)
.++++ +++.++++.. .|.+||..+++.... +.........++++ | ++.++++. ..++.|.+||.. ++
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd--p~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN--PNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC--TTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEc--CCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 99999 7888877754 899999988875421 22112334455555 8 55566665 578999999998 88
Q ss_pred eEEEEec
Q 017773 310 PVWVHDF 316 (366)
Q Consensus 310 ~~~~~~~ 316 (366)
.+..+..
T Consensus 304 ~~~~i~~ 310 (328)
T 3dsm_A 304 LIDEFYV 310 (328)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8877653
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=1.9e-15 Score=141.93 Aligned_cols=286 Identities=10% Similarity=-0.051 Sum_probs=174.2
Q ss_pred CCCCCEEEEeecCCe---EEEEEceec---ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC----
Q 017773 51 DPSDSVFATGGIARK---IRIYNIKSV---LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD---- 120 (366)
Q Consensus 51 s~~~~~l~t~~~dg~---i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---- 120 (366)
+|+|++++....++. -.+|..... .... ..+..... ...+|...+..++|+|+ |++|+.+..+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~lld~~~---l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e 187 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG--RVLLDPNT---WAKDGATALDAWAASDD--GRLLAYSVQDGGSD 187 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC--EEEECGGG---CC----EEEEEEEECTT--SSEEEEEEEETTCS
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC--EEEECHHH---hccCCCEEEEeEEECCC--CCEEEEEEcCCCCc
Confidence 388988877665443 566665432 1111 11111100 00112235889999999 9998876543
Q ss_pred -CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--------------cEEEeeCCCCCCceeEeecC
Q 017773 121 -GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--------------TMQMWDPRCDGGKCVSTVQP 185 (366)
Q Consensus 121 -g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--------------~v~~~d~~~~~~~~~~~~~~ 185 (366)
..|++||+.+++.+.... +.. .+..++|+|+ +.++++ +.++ .|++|++.+...+....+..
T Consensus 188 ~~~i~v~dl~tg~~~~~~~-~~~-~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLADEL-KWV-KFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp EEEEEEEETTTCCEEEEEE-EEE-ESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred eEEEEEEECCCCCCCCccC-CCc-eeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 469999999988654321 111 3468999999 888444 4443 38899987322222334443
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCC-eeEeecccCcEEEEEEcCCCEEEEEeCC----Cc
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDP-VLVFDGHRKTVTYIRFLDVDTLVTAGTD----GC 255 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~ 255 (366)
..+...+..+.|+|+| +.|+..+.+ ..|++||+.++... ...+..+........+.+++.|+..+.+ +.
T Consensus 264 ~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 264 PELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp TTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCE
T ss_pred CCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCE
Confidence 3444468899999999 566555543 38999999875223 4555555555555544577777776653 45
Q ss_pred EEEEecCCC--ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEee-cCceEEEEecccccccCCCCceeeEE
Q 017773 256 LKLWNVNDS--RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR-WGEPVWVHDFEPVTAAGSERGFVSSV 332 (366)
Q Consensus 256 i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 332 (366)
|.+||+.++ +....+..+...+.. ++++ ++.++++...|+..+||.+. +++....+.+ .+.+.+..+
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~ 412 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLES--VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-------PGIGSASGL 412 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEE--EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-------SSSCEEEEE
T ss_pred EEEEeCCCCccccEEEecCCCCeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-------CCCeEEEEe
Confidence 999999875 233333333333333 3433 56778888889988888776 4554444332 235678999
Q ss_pred EeeccCCCceEEE----EeCCCCcEEEEEeccc
Q 017773 333 CWRRVGEDECTLV----AGGSDGLLHVFVGKKK 361 (366)
Q Consensus 333 ~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~ 361 (366)
+++| ++..|+ +....+.|++||+.++
T Consensus 413 ~~s~---d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 413 SGRP---GDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp ECCB---TCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred ecCC---CCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999 665555 3344688999998764
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.1e-15 Score=128.78 Aligned_cols=242 Identities=13% Similarity=0.114 Sum_probs=153.2
Q ss_pred cceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecC---Ce--EEEEEceecccccceeeeecCceece
Q 017773 17 ERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIA---RK--IRIYNIKSVLVDHPVVAVVDHSKVCD 91 (366)
Q Consensus 17 ~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
...+..|+.+++....- ..+..++|||||++||.++.+ +. |.+|++.+++... +
T Consensus 42 ~~~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l-------- 100 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK----I-------- 100 (347)
T ss_dssp EEEEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----E--------
T ss_pred cceEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE----E--------
Confidence 34455666665443211 457889999999999887654 34 6666766543211 1
Q ss_pred eeeecCCceeEEEEecCCCCcEEEEEcCC---------------------------CcEEEEeCCCCceeEeeecCCCCc
Q 017773 92 YYICTPAKLSSLKWKPGTSGRVLGSGDYD---------------------------GVVMEYDLEKKVPIFERDEHGGRR 144 (366)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iw~~~~~~~~~~~~~~~~~~ 144 (366)
..+.. +..++|+|+ ++.|+.++.+ ..|.+||+.+++.+..+.. . .
T Consensus 101 --~~~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~ 172 (347)
T 2gop_A 101 --LEAKN-IRSLEWNED--SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-R 172 (347)
T ss_dssp --EEESE-EEEEEECTT--SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-T
T ss_pred --EcCCC-ccceeECCC--CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-C
Confidence 11123 789999999 9888877632 5799999988876344444 2 6
Q ss_pred eeeEEeccCCCceEEEecCCC-------cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC------
Q 017773 145 VWSVDYSKGDPVLGASGSDDG-------TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD------ 211 (366)
Q Consensus 145 v~~i~~~~~~~~l~~~~~~dg-------~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------ 211 (366)
+..+.|+|++ .+ +++..++ ...+|.+. +++...... + ..+..+ +|+| +.|+.++.+
T Consensus 173 ~~~~~~spdg-~~-~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~-~~~~~~--spdg-~~l~~~~~~~~~~~~ 241 (347)
T 2gop_A 173 FSSGIWHRDK-IV-VNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K-VSFYAV--DSDG-ERILLYGKPEKKYMS 241 (347)
T ss_dssp TCEEEEETTE-EE-EEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E-ESEEEE--EECS-SCEEEEECCSSSCCC
T ss_pred cccccCCCCe-EE-EEEecccccccccccccEEEeC--CCceEEecc---C-cceeeE--CCCC-CEEEEEEccccCCcc
Confidence 7899999999 44 6665442 34555544 344333222 1 345444 8998 455554433
Q ss_pred --CeEEEEecCCCCCCeeEeecccCcEEE-EEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCC
Q 017773 212 --KKAYAYDVRKMVDPVLVFDGHRKTVTY-IRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 212 --~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (366)
..|++|| ++ +.......+...+.. +.|+++ ++++++.++.+++| +.+++.. .+..+...+..++++ |
T Consensus 242 ~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s--~-- 311 (347)
T 2gop_A 242 EHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVD--E-- 311 (347)
T ss_dssp SSCEEEEEC--SS-CEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEES--S--
T ss_pred ccceEEEEC--CC-ceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeee--C--
Confidence 4788888 33 344444456677886 889855 88899999999999 8866553 444445556555554 7
Q ss_pred CeEEEecCCCeE-EEEEeecCc
Q 017773 289 GLLGCGSETNQV-FVYDVRWGE 309 (366)
Q Consensus 289 ~~l~~~~~dg~i-~iwd~~~~~ 309 (366)
.++++++.++.. .+|.+. ++
T Consensus 312 ~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 312 IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SEEEEEECSSSCCEEEEES-SS
T ss_pred cEEEEEcCCCChHHheEeC-Cc
Confidence 677777666654 778776 54
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.9e-15 Score=124.98 Aligned_cols=238 Identities=10% Similarity=-0.006 Sum_probs=162.7
Q ss_pred CCCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
+.....+++|+|+|+ +++++..++.|..|+..++ . . .+.. +...+.+++++|+ |+++++...
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~---~~~~----------~~~~~~~l~~~~d--g~l~v~~~~ 88 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S---PEMH----------PSHHQNGHCLNKQ--GHLIACSHG 88 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E---EEES----------SCSSEEEEEECTT--CCEEEEETT
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E---EEEC----------CCCCcceeeECCC--CcEEEEecC
Confidence 355678999999998 7888888999999998764 1 1 2221 2346899999998 988888877
Q ss_pred CCcEEEEeCCCCceeEeeecCC---CCceeeEEeccCCCceEEE----ec-------------CCCcEEEeeCCCCCCce
Q 017773 120 DGVVMEYDLEKKVPIFERDEHG---GRRVWSVDYSKGDPVLGAS----GS-------------DDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~----~~-------------~dg~v~~~d~~~~~~~~ 179 (366)
++.|.+||..+++......... ...+..+++.|+|+.+ ++ |+ ..+.|..++.. ++.
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~ 164 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTL 164 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCC---CCE
Confidence 7899999998776543332211 1246789999998765 65 33 12345555543 333
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeecccCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDGHRKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
..+. .+...+..++|+|++ +.+++.+.++.|++||+...... ...+..+...+..+++. +++++++. ++.
T Consensus 165 -~~~~--~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~ 238 (296)
T 3e5z_A 165 -SAPI--RDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG 238 (296)
T ss_dssp -EEEE--CCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE
T ss_pred -EEee--cCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe
Confidence 2332 234477899999999 55677778899999999732233 22333344556788998 77766555 889
Q ss_pred EEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc
Q 017773 256 LKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 309 (366)
|.+||.. ++.+..+..+.. +..+++. .|+++.|++++.++ +.-++..+.+
T Consensus 239 v~~~~~~-g~~~~~~~~~~~-~~~~~f~-~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 239 VHVLTPD-GDELGRVLTPQT-TSNLCFG-GPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp EEEECTT-SCEEEEEECSSC-CCEEEEE-STTSCEEEEEETTE-EEEEECSCCB
T ss_pred EEEECCC-CCEEEEEECCCC-ceeEEEE-CCCCCEEEEEcCCe-EEEEEccccc
Confidence 9999986 777888877766 6666663 37888888887753 4444554443
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.73 E-value=1.3e-13 Score=114.95 Aligned_cols=277 Identities=8% Similarity=-0.082 Sum_probs=184.1
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...+.+++++++|++.++...++.|.+|+.. ++... .... .....+.++++.++ +.++++...++
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~----------~~~~~~~~i~~~~~--g~l~v~~~~~~ 83 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVP----------TPDAKVMCLIVSSL--GDIWFTENGAN 83 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECS----------STTCCEEEEEECTT--SCEEEEETTTT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECC----------CCCCcceeEEECCC--CCEEEEecCCC
Confidence 5678999999999988877678899999976 33211 0111 11245889999988 88888777788
Q ss_pred cEEEEeCCCCceeE-eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 122 VVMEYDLEKKVPIF-ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 122 ~i~iw~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
.|..+|.. ++... ...... ..+.++++.+++..+ ++...++.|..+|.. ++.. .+........+..+++.++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~-~~~~~i~~~~~g~l~-v~~~~~~~i~~~~~~---g~~~-~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPD-SGPYGITEGLNGDIW-FTQLNGDRIGKLTAD---GTIY-EYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTT-CCEEEEEECSTTCEE-EEETTTTEEEEECTT---SCEE-EEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CCeEEecCCCCC-CCCccceECCCCCEE-EEccCCCeEEEECCC---CCEE-EccCCCCCCCceeEEECCC
Confidence 99999988 54432 222122 378999999988755 666667889999876 3332 2222223447899999999
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeee-eeccccee
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRT-YKGHVNNR 277 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~ 277 (366)
+ +++++...++.|..+|. ++ +... ....+...+..+++. ++.++++....+.|.+||. +++.... +..+...+
T Consensus 157 g-~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 157 N-ALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARP 232 (300)
T ss_dssp S-SEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred C-CEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence 8 66666666789999998 33 2222 122334567889998 7777776666778999998 4443322 22223334
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
..+++. ++|++.++...++.|..||. +++.. .+.. ......+.++++.+ +|+++++.. . .|..++
T Consensus 233 ~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~------~~~~~~~~~i~~~~---~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 233 HAITAG--KNSEIWFTEWGANQIGRITN-DNTIQ-EYQL------QTENAEPHGITFGK---DGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEEEC--STTCEEEEETTTTEEEEECT-TSCEE-EEEC------CSTTCCCCCEEECT---TSCEEEECS-S-EEEEEE
T ss_pred eEEEEC--CCCCEEEeccCCCeEEEECC-CCcEE-EEEC------CccCCccceeEeCC---CCCEEEEcc-C-ceEEeC
Confidence 455554 89987777777789999998 45433 2222 12345688999998 777766655 4 666666
Q ss_pred ec
Q 017773 358 GK 359 (366)
Q Consensus 358 ~~ 359 (366)
.+
T Consensus 298 p~ 299 (300)
T 2qc5_A 298 LN 299 (300)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=2e-15 Score=127.74 Aligned_cols=269 Identities=9% Similarity=-0.022 Sum_probs=179.9
Q ss_pred cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC
Q 017773 62 IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG 141 (366)
Q Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 141 (366)
.++.|.++|.++++............ ........+.+.. ++++++...++.|.+||..+++.+.++....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~-------~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~ 84 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGF-------KLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKEVGRITGFT 84 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSS-------CCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCEEEEEECCS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCc-------ccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEEEEEcCCCC
Confidence 37899999998765433110000000 0012356777753 5666777778999999999999888885433
Q ss_pred CCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC---CCCCeEEEEEcCCCCcEEEEEe-cCCeEEEE
Q 017773 142 GRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA---SRSAVCCVEFHPFGSSLVAAGC-ADKKAYAY 217 (366)
Q Consensus 142 ~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~ 217 (366)
....+++++++ .++++...++.|.+||+. +++....+.... .......+++ . +..++++.. .++.|.++
T Consensus 85 --~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~--t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 85 --SPRYIHFLSDE-KAYVTQIWDYRIFIINPK--TYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp --SEEEEEEEETT-EEEEEEBSCSEEEEEETT--TTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEE
T ss_pred --CCcEEEEeCCC-eEEEEECCCCeEEEEECC--CCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEE
Confidence 78899998887 554555478999999998 777776665432 1114556777 3 335555544 48999999
Q ss_pred ecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCC----------CcEEEEecCCCceeeeeeccc-ceeeeEEEEEe
Q 017773 218 DVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTD----------GCLKLWNVNDSRVIRTYKGHV-NNRNFVGLSVW 285 (366)
Q Consensus 218 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~ 285 (366)
|+.+. +....+... .....+.++ ++++++++..+ +.|.++|..+++....+.... .....++++
T Consensus 158 D~~t~-~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~-- 233 (328)
T 3dsm_A 158 DTETD-KVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN-- 233 (328)
T ss_dssp ETTTT-EEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC--
T ss_pred ECCCC-eEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe--
Confidence 99987 555555543 334678888 77766666554 789999999998877775432 234455555
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe----CCCCcEEEEEeccc
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG----GSDGLLHVFVGKKK 361 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~----~~dg~i~iw~~~~~ 361 (366)
|+++.|+++.. .|.+||..+++..... + .........+++++|. ++.++++. ..++.|.+|+.+++
T Consensus 234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~-~-----~~~~~~~p~gi~vdp~--~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 234 GTRDTLYWINN--DIWRMPVEADRVPVRP-F-----LEFRDTKYYGLTVNPN--NGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp TTSCEEEEESS--SEEEEETTCSSCCSSC-S-----BCCCSSCEEEEEECTT--TCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred cCCCEEEEEcc--EEEEEECCCCceeeee-e-----ecCCCCceEEEEEcCC--CCeEEEEcccccccCCEEEEECCCCC
Confidence 99999888765 8999999877653111 0 1112456889999982 23455665 57899999998743
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.72 E-value=5.6e-14 Score=120.48 Aligned_cols=273 Identities=11% Similarity=0.000 Sum_probs=180.6
Q ss_pred EECCCCCEEEEeec--CC---eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-----
Q 017773 49 EFDPSDSVFATGGI--AR---KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD----- 118 (366)
Q Consensus 49 ~~s~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----- 118 (366)
...|+++++++... .. .|.++|..+.+... .+... ..+ .++++|+ +++++.+.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~---~i~~g----------~~p--~i~~spD--g~~lyv~n~~~~~ 89 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGG----------FLP--NPVAAHS--GSEFALASTSFSR 89 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEE---EecCC----------CCC--CeEECCC--CCEEEEEeccccc
Confidence 44577877776653 22 78999988765432 11111 122 8999999 99888875
Q ss_pred -----CCCcEEEEeCCCCceeEeeecC-C-----CCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEe-ecC
Q 017773 119 -----YDGVVMEYDLEKKVPIFERDEH-G-----GRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVST-VQP 185 (366)
Q Consensus 119 -----~dg~i~iw~~~~~~~~~~~~~~-~-----~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~-~~~ 185 (366)
.++.|.+||..+.+.+..+... . ......+.|+|++++++++... ++.|.++| . +++.+.. +..
T Consensus 90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~--t~~~~~~~i~~ 166 (373)
T 2mad_H 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q--GGSSDDQLLSS 166 (373)
T ss_pred cccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C--CCCEEeEEcCC
Confidence 3678999999988887776543 1 1134589999999999544433 57899999 8 7777777 653
Q ss_pred CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-----cccCcE-EEEEEc-CCCEEEEEeCCCcEEE
Q 017773 186 SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-----GHRKTV-TYIRFL-DVDTLVTAGTDGCLKL 258 (366)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i 258 (366)
.+ ++.+.|++...+++.+.||.+.++|. ++ +...... ....++ ....+. ++..++..+..+.+.+
T Consensus 167 ~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 167 PT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ 238 (373)
T ss_pred Cc------eEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEE
Confidence 22 25566777667778889999999999 65 3332221 112222 223444 4444444446789999
Q ss_pred EecCCCc--eeeeeecc----------cceeeeEEEEEecCCCeEEEecC----------CCeEEEEEeecCceEEEEec
Q 017773 259 WNVNDSR--VIRTYKGH----------VNNRNFVGLSVWRHGGLLGCGSE----------TNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 259 wd~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 316 (366)
.|+.... .+..+... ......+.+ +|+++.++.+.. ++.|.++|+.+++.+..+..
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~--s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~ 316 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY--LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEE--CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC
Confidence 9987542 22333211 111222444 489888877543 35799999999999887753
Q ss_pred ccccccCCCCceeeEEEeeccCCCce-EEEEeC-CCCcEEEEEecccCC
Q 017773 317 EPVTAAGSERGFVSSVCWRRVGEDEC-TLVAGG-SDGLLHVFVGKKKPL 363 (366)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~l 363 (366)
+ ....+++|+| ||+ .++++. .++.|.++|+++.++
T Consensus 317 g---------~~p~~i~~s~---Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 317 G---------HDVDAISVAQ---DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred C---------CCcCeEEECC---CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 2 3578999999 888 777776 589999999987654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=2.4e-14 Score=121.22 Aligned_cols=277 Identities=11% Similarity=0.059 Sum_probs=187.9
Q ss_pred EEEECCCCCEEEEeec-----CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc---
Q 017773 47 VIEFDPSDSVFATGGI-----ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD--- 118 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--- 118 (366)
.....|+++.+++... ++.|.+.|..+.+... ..... ..+ . ++++|+ |++++++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~---~I~vG----------~~P-~-va~spD--G~~lyVan~~~ 99 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG----------FLP-N-PVVADD--GSFIAHASTVF 99 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC----------SSC-E-EEECTT--SSCEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE---EEECC----------CCC-c-EEECCC--CCEEEEEcccc
Confidence 3556789988777765 5789999988766543 21111 123 3 999999 98887765
Q ss_pred -------CCCcEEEEeCCCCceeEeeecCC------CCceeeEEeccCCCceEEEec-CCCcEEEeeCCCCCCceeEeec
Q 017773 119 -------YDGVVMEYDLEKKVPIFERDEHG------GRRVWSVDYSKGDPVLGASGS-DDGTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 119 -------~dg~i~iw~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~-~dg~v~~~d~~~~~~~~~~~~~ 184 (366)
.++.|.+||..+.+.+.++.... +.....+.++|+|++++++.. .++.|.++|+. +.+.+..+.
T Consensus 100 ~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~--t~~vv~tI~ 177 (386)
T 3sjl_D 100 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE--GKAFKRMLD 177 (386)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT--TTEEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC--CCcEEEEEE
Confidence 36789999999999888875432 124668999999999855543 37899999999 888888886
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc----cCcEE-EEEEc--CCCEEEEEeCCCcEE
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH----RKTVT-YIRFL--DVDTLVTAGTDGCLK 257 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~-~~~~~--~~~~l~~~~~d~~i~ 257 (366)
..+ +....|.+...+++.+.||++.+.++....+.......+ ..++. ...|. ++++++ .+.+|.|.
T Consensus 178 v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~ 250 (386)
T 3sjl_D 178 VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIH 250 (386)
T ss_dssp CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEE
T ss_pred CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEE
Confidence 543 122335555677788889999999987632432221111 12221 23553 554444 55689999
Q ss_pred EEecCCCc--eeeeeec----------ccceeeeEEEEEecCCCeEEEecC----------CCeEEEEEeecCceEEEEe
Q 017773 258 LWNVNDSR--VIRTYKG----------HVNNRNFVGLSVWRHGGLLGCGSE----------TNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 258 iwd~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~ 315 (366)
+.|+.+.. .+..+.. .......++++ ++++.++.... .+.|.++|+.+++.+..+.
T Consensus 251 v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~--~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 251 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH--RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp EEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE--TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcceeecceeccccccccccccCCCcceeeEC--CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 99997653 3333320 11122345555 88888887642 2579999999999998886
Q ss_pred cccccccCCCCceeeEEEeeccCCCce-EEEE-eCCCCcEEEEEecccCC
Q 017773 316 FEPVTAAGSERGFVSSVCWRRVGEDEC-TLVA-GGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 316 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s-~~~dg~i~iw~~~~~~l 363 (366)
.+ ..+.+|+++| |++ +|++ ...++.|.++|..+.++
T Consensus 329 vg---------~~~~~lavs~---D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 329 MG---------HEIDSINVSQ---DEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EE---------EEECEEEECS---SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CC---------CCcceEEECC---CCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 53 3688999999 775 5555 56699999999987553
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=3.2e-13 Score=112.46 Aligned_cols=237 Identities=8% Similarity=-0.040 Sum_probs=164.2
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..+.++++.++ |.++++...++.|.+||.. ++............+.++++.+++..+ ++...++.|..||.. +
T Consensus 15 ~~~~~i~~d~~--g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~~~~~i~~~~~~---g 87 (299)
T 2z2n_A 15 TGPYGITVSDK--GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVW-FTENAANKIGRITKK---G 87 (299)
T ss_dssp CCEEEEEECTT--SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEE-EEETTTTEEEEECTT---S
T ss_pred CCccceEECCC--CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEE-EeCCCCCeEEEECCC---C
Confidence 45899999998 8888877768899999988 543322211122378999999988755 666667889999976 2
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
+ ...+........+..+++.|+| .++++...++.|..||. ++ +... ........+..+++. ++.++++...++.
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DG-KIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred c-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CC-CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 2 2333322234478999999988 67777767889999998 43 2222 222234568899998 7777777767789
Q ss_pred EEEEecCCCceeee-eecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEe
Q 017773 256 LKLWNVNDSRVIRT-YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCW 334 (366)
Q Consensus 256 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 334 (366)
|..||. +++.... +......+..+++. +++.+.++...++.|.+||. +++... +.. ..+...+.++++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------~~~~~~~~~i~~ 232 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKG--NDDALWFVEIIGNKIGRITT-SGEITE-FKI------PTPNARPHAITA 232 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCEEE-EEC------SSTTCCEEEEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEEC--CCCCEEEEccCCceEEEECC-CCcEEE-EEC------CCCCCCceeEEE
Confidence 999998 6654432 22222334445544 89998887777889999998 665432 221 224467889999
Q ss_pred eccCCCceEEEEeCCCCcEEEEEec
Q 017773 335 RRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++ +|+++++...++.|..|+..
T Consensus 233 ~~---~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 233 GA---GIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CS---TTCEEEEETTTTEEEEEETT
T ss_pred CC---CCCEEEeccCCceEEEECCC
Confidence 98 88777777678889999874
No 200
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=2.1e-15 Score=131.12 Aligned_cols=238 Identities=13% Similarity=0.011 Sum_probs=151.1
Q ss_pred ceeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDY---DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
.+..++|+|+ |++|+.... +..|.+||+.+++...... +.......+.|+|+++.+ +.++.++.|++||+.
T Consensus 37 ~~~~~~~Spd--G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l-~~~~~~~~l~~~d~~-- 110 (396)
T 3c5m_A 37 YFYQKCFTQD--GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAF-FYVKNELNLMKVDLE-- 110 (396)
T ss_dssp CTTSCCBCTT--SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEE-EEEETTTEEEEEETT--
T ss_pred eeecCcCCCC--CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEE-EEEEcCCcEEEEECC--
Confidence 3677899999 988776643 2478888998877544333 332123348899999988 677777899999998
Q ss_pred CCceeEeecCCCCCCCeEE-------------------EEEcCCCCcEEEEE-----ecCCeEEEEecCCCCCCeeEeec
Q 017773 176 GGKCVSTVQPSASRSAVCC-------------------VEFHPFGSSLVAAG-----CADKKAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~ 231 (366)
+++......... ..... +.|+|++ ..++.. ..+..|++||+.++ +. ..+..
T Consensus 111 ~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g-~~-~~~~~ 185 (396)
T 3c5m_A 111 TLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETG-EL-EVIHQ 185 (396)
T ss_dssp TCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTC-CE-EEEEE
T ss_pred CCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCC-cE-Eeecc
Confidence 555544443222 12222 3467776 343332 35678999999876 33 33445
Q ss_pred ccCcEEEEEEcC--CCEEEEEeCC------CcEEEEecCCCceeeeeeccc--ceeeeEEEEEecCCCeEEEecCC----
Q 017773 232 HRKTVTYIRFLD--VDTLVTAGTD------GCLKLWNVNDSRVIRTYKGHV--NNRNFVGLSVWRHGGLLGCGSET---- 297 (366)
Q Consensus 232 ~~~~v~~~~~~~--~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d---- 297 (366)
+...+..+.|+. +..|+..+.+ ..|.+||+..++.. .+..+. ..+..++ |+|+|++|+.++.+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~--~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF--WIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE--ECTTSSCEEEEEEETTTC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE--ECCCCCEEEEEecCCCCc
Confidence 677888999983 6666665543 36888898765433 332222 2334444 45999988776543
Q ss_pred -CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC----------------CCCcEEEEEecc
Q 017773 298 -NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG----------------SDGLLHVFVGKK 360 (366)
Q Consensus 298 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~----------------~dg~i~iw~~~~ 360 (366)
+.|++||+.+++.......+ . .. +.|+| +||+++++++ .++.|++|++.+
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~---------~-~~-~~~s~--~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 263 DRVIYKANPETLENEEVMVMP---------P-CS-HLMSN--FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp CEEEEEECTTTCCEEEEEECC---------S-EE-EEEEC--SSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred cceEEEEECCCCCeEEeeeCC---------C-CC-CCccC--CCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 45999999888765433211 1 22 78887 1445777643 347899999876
Q ss_pred cCC
Q 017773 361 KPL 363 (366)
Q Consensus 361 ~~l 363 (366)
+.+
T Consensus 330 ~~~ 332 (396)
T 3c5m_A 330 KSA 332 (396)
T ss_dssp TBC
T ss_pred Cce
Confidence 543
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.66 E-value=1.5e-13 Score=115.45 Aligned_cols=244 Identities=10% Similarity=0.065 Sum_probs=158.5
Q ss_pred CceEEEEECCCCCEEEE-------eecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 43 DSIGVIEFDPSDSVFAT-------GGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
....+++|+++|+++++ +..++.|.+|+..+++... +... ...++...+.+++++++ +..|+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~-----~~~~~~~~~~~i~~~~~--~g~l~ 86 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----ICKP-----EVNGYGGIPAGCQCDRD--ANQLF 86 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE----EECC-----EETTEECCEEEEEECSS--SSEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE----EEec-----ccCCCCCCCceEEEecC--CCcEE
Confidence 34689999999988888 6778899999976654321 1110 00012245889999986 34444
Q ss_pred EEcCCCcEEEEeCCCCceeEe-eec---CCCCceeeEEeccCCCceEEEecCC---------------CcEEEeeCCCCC
Q 017773 116 SGDYDGVVMEYDLEKKVPIFE-RDE---HGGRRVWSVDYSKGDPVLGASGSDD---------------GTMQMWDPRCDG 176 (366)
Q Consensus 116 ~~~~dg~i~iw~~~~~~~~~~-~~~---~~~~~v~~i~~~~~~~~l~~~~~~d---------------g~v~~~d~~~~~ 176 (366)
.+...+.|.+||.+ ++.... ... .....+.++++.+++..+ ++...+ +.|..+|..
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 161 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD--- 161 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT---
T ss_pred EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC---
Confidence 44445579999998 654432 221 111258899999988765 554443 456667654
Q ss_pred CceeEeecCCCCCCCeEEEEEc----CCCCcEEEEEecCCeEEEEecCCCCC-----CeeEeeccc-CcEEEEEEc-CCC
Q 017773 177 GKCVSTVQPSASRSAVCCVEFH----PFGSSLVAAGCADKKAYAYDVRKMVD-----PVLVFDGHR-KTVTYIRFL-DVD 245 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~-~~v~~~~~~-~~~ 245 (366)
++...... .......++++ |++..++++...++.|.+||.+...+ ....+..+. .....+++. ++.
T Consensus 162 g~~~~~~~---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 162 GQMIQVDT---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp SCEEEEEE---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred CCEEEecc---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 33332222 12256889999 98833445555789999999862212 122233333 557889998 888
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE-EEecCCCeEEEEEeec
Q 017773 246 TLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL-GCGSETNQVFVYDVRW 307 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 307 (366)
++++...++.|.+||..+++.+..+..+...+..++++ |+++.| ++...++.|..|++..
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK--PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC--TTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC--CCCCEEEEEeCCCCeEEEEeCCC
Confidence 88887788999999998787777776665556666664 999944 5556678899998764
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=5.2e-13 Score=112.15 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=154.8
Q ss_pred ceeEEEEecCCCCcEEEE-------EcCCCcEEEEeCCCCceeEeee----cCCCCceeeEEeccCCCceEEEecCCCcE
Q 017773 99 KLSSLKWKPGTSGRVLGS-------GDYDGVVMEYDLEKKVPIFERD----EHGGRRVWSVDYSKGDPVLGASGSDDGTM 167 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~~dg~v 167 (366)
...+++|.++ +.++++ +..++.|..||..+++...... .+.. .+.++++.+++..++++.. .+.|
T Consensus 19 ~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 19 GAEGPVFDKN--GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGG-IPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp TCEEEEECTT--SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEEC-CEEEEEECSSSSEEEEEET-TTEE
T ss_pred CccCceECCC--CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCC-CCceEEEecCCCcEEEEEC-CCCE
Confidence 4688999987 888877 5678899999988776543221 1223 6889999998334424443 4478
Q ss_pred EEeeCCCCCCceeEe-ecCC--CCCCCeEEEEEcCCCCcEEEEEecC---------------CeEEEEecCCCCCCeeEe
Q 017773 168 QMWDPRCDGGKCVST-VQPS--ASRSAVCCVEFHPFGSSLVAAGCAD---------------KKAYAYDVRKMVDPVLVF 229 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~ 229 (366)
.+||.. ++.... .... .....+.+++++|+| +++++...+ +.|..+|.. + +. ..+
T Consensus 95 ~~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~-~~~ 167 (314)
T 1pjx_A 95 LVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QM-IQV 167 (314)
T ss_dssp EEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CE-EEE
T ss_pred EEEeCC---CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-C-CE-EEe
Confidence 889976 333222 1111 112358899999998 666666554 567777765 3 33 233
Q ss_pred ecccCcEEEEEEc----CCC-EEE-EEeCCCcEEEEecC-CCc-----eeeeeeccc-ceeeeEEEEEecCCCeEEEecC
Q 017773 230 DGHRKTVTYIRFL----DVD-TLV-TAGTDGCLKLWNVN-DSR-----VIRTYKGHV-NNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 230 ~~~~~~v~~~~~~----~~~-~l~-~~~~d~~i~iwd~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
..+......++++ ... .++ +...++.|.+||.. +++ ....+..+. .....+++. ++|+++++...
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~~~ 245 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDNNLLVANWG 245 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTCCEEEEEET
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC--CCCCEEEEEcC
Confidence 3334456778876 433 454 44567899999986 443 222333332 334445544 99998888777
Q ss_pred CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce-EEEEeCCCCcEEEEEecc
Q 017773 297 TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC-TLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~ 360 (366)
++.|.+||..+++....+.. +...+.+++|+| +++ ++++...++.|..|+++.
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~--------~~~~~~~i~~~~---dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRC--------PFEKPSNLHFKP---QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEEC--------SSSCEEEEEECT---TSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeC--------CCCCceeEEECC---CCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999886766555432 346789999988 887 555666678899999864
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.63 E-value=1.2e-12 Score=113.70 Aligned_cols=237 Identities=13% Similarity=0.065 Sum_probs=160.1
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
-.....++|+|+++++++...++.|++||..++.... +.... .... ++|+|+ ++.|+++..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~----~~~~~----------~~~~-ia~~~~--g~~l~~~d~~~ 192 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT----VHPGF----------KGGK-PAVTKD--KQRVYSIGWEG 192 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE----EEETC----------CBCB-CEECTT--SSEEEEEBSST
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE----eeccC----------CCCc-eeEecC--CCcEEEEecCC
Confidence 3568899999999988887777899999987654322 11111 1234 899998 88888887765
Q ss_pred --cEEEEeCCCCceeEee---ecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEee---cCCCCCCCe-
Q 017773 122 --VVMEYDLEKKVPIFER---DEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTV---QPSASRSAV- 192 (366)
Q Consensus 122 --~i~iw~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~i- 192 (366)
.|.+++...+.....+ .......+.+++++|++..| +.+..++.|+.||.. .... ..+ ...+....-
T Consensus 193 ~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~l-yv~d~~~~I~~~d~~--~~~~-~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWL-YFVDSNKNFGRFNVK--TQEV-TLIKQLELSGSLGTNP 268 (409)
T ss_dssp TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEE-EEECTTCEEEEEETT--TCCE-EEEEECCCCSCCCCSS
T ss_pred CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeE-EEEECCCcEEEEECC--CCCE-EEEecccccCCCCCCc
Confidence 7888988766543333 12122367899999966666 446678899999987 3432 222 111121122
Q ss_pred E-EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc---------------CcEEEEEEc-CCCEEEEEe-CCC
Q 017773 193 C-CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR---------------KTVTYIRFL-DVDTLVTAG-TDG 254 (366)
Q Consensus 193 ~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------~~v~~~~~~-~~~~l~~~~-~d~ 254 (366)
. .++|+|++..++++-..++.|+.|+.... ...+.++. .....++++ +++++++-. .++
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 3 99999965477777778899999997653 23332221 347889998 888777777 789
Q ss_pred cEEEEecCCCceeeeeecc---------------cceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 255 CLKLWNVNDSRVIRTYKGH---------------VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
.|+.|++.+++. .++.++ -.....+++. +++.++++-..+++|+.+++
T Consensus 346 ~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd--~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYD--GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEEC--SSSEEEEEESTTCEEEEEEE
T ss_pred EEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEc--CCCCEEEEECCCCeEEEEEe
Confidence 999999877753 344433 1123445555 88888888888888888775
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=4.2e-12 Score=108.87 Aligned_cols=268 Identities=11% Similarity=-0.023 Sum_probs=173.2
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecCce
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
.+..+++.+++++.....+ ..+ .++++|||++++++. .++.|.+||..+.+....... .+...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g----~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~-~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGG----FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPR 120 (373)
T ss_pred EEEEEECCCCeEEEEecCC----CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC-CCccc
Confidence 6678888888776544322 233 999999999988875 367899999986554331111 10000
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcC--CCcEEEEeCCCCceeEe-eecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDY--DGVVMEYDLEKKVPIFE-RDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
.. +......+.|+|+ |++|+++.. ++.|.++| .+++.+.. +.... ++.+.|+++..+++.+.||
T Consensus 121 ---~~--~g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 121 ---FD--VGPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred ---cc--cCCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCceEEEEcCCC
Confidence 00 0012457999999 999998864 47899999 99988777 54332 2455677766667888899
Q ss_pred cEEEeeCCCCCCceeEeecC---CCCCCC-eEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-CeeEeec---------
Q 017773 166 TMQMWDPRCDGGKCVSTVQP---SASRSA-VCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDG--------- 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~---~~~~~~-i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~--------- 231 (366)
.+.++|. . ++....... .....+ .....+.+++..++++. ..+.+.+.|+..... ....+..
T Consensus 188 ~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 188 GLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CEEEEEC-C--CcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 9999998 2 333322110 011112 12345666664445444 678999999875421 1122211
Q ss_pred -ccCcEEEEEEc-CCCEEEEEeC----------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEEec-CC
Q 017773 232 -HRKTVTYIRFL-DVDTLVTAGT----------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGS-ET 297 (366)
Q Consensus 232 -~~~~v~~~~~~-~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~d 297 (366)
.......+.++ +++.++.+.. .+.|.++|..+++.+.++.... ....+.++ |||+ +++++. .+
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s--~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVA--QDGGPDLYALSAGT 340 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEEC--CCCCeEEEEEcCCC
Confidence 11223446777 7777766543 3579999999999999886543 34556666 9999 777776 58
Q ss_pred CeEEEEEeecCceEEE
Q 017773 298 NQVFVYDVRWGEPVWV 313 (366)
Q Consensus 298 g~i~iwd~~~~~~~~~ 313 (366)
+.|.+||+.+++.+..
T Consensus 341 ~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEECCCCCEEee
Confidence 9999999999998866
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=2e-13 Score=117.71 Aligned_cols=272 Identities=12% Similarity=0.077 Sum_probs=182.2
Q ss_pred CCCCEEEEeecC-----CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc--------
Q 017773 52 PSDSVFATGGIA-----RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-------- 118 (366)
Q Consensus 52 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------- 118 (366)
|+++.+++.... +.|.++|..+.+.... +.-. ..+ .++++|+ +++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~---I~vG----------~~P--gia~SpD--gk~lyVan~~~~~~~~ 144 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM---TDGG----------FLP--HPVAAED--GSFFAQASTVFERIAR 144 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE---EEEC----------SSC--EEEECTT--SSCEEEEEEEEEETTE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE---EECC----------CCC--ceEECCC--CCEEEEEecccccccc
Confidence 466655555442 6899999988765442 1111 123 7999999 88887775
Q ss_pred --CCCcEEEEeCCCCceeEeeecC-C-----CCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEeecCCCCC
Q 017773 119 --YDGVVMEYDLEKKVPIFERDEH-G-----GRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVSTVQPSASR 189 (366)
Q Consensus 119 --~dg~i~iw~~~~~~~~~~~~~~-~-----~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~~~ 189 (366)
.++.|.++|..+++.+..+... . ......+.++|++++++++... ++.|.+.|+. +.+.+..+...+
T Consensus 145 G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~--t~kvv~~I~v~g-- 220 (426)
T 3c75_H 145 GKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE--GKTFDRMLDVPD-- 220 (426)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT--TTEEEEEEECCS--
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC--CCeEEEEEEcCC--
Confidence 3678999999999988877543 1 1145689999999998554433 6889999999 788888887532
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeE----eecccCcE-EEEEEc-CCCEEEEEeCCCcEEEEecCC
Q 017773 190 SAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLV----FDGHRKTV-TYIRFL-DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 190 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~v-~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 263 (366)
+....|++...+++.+.||.+.+.+..++ +.... +.....++ ..+.+. ++..++.....+.+.+.|+..
T Consensus 221 ----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 221 ----CYHIFPASPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp ----EEEEEEEETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred ----ceeeccCCCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence 13445555566777778888888888443 33321 11111221 123456 667766667788999999865
Q ss_pred Cce--eeeeec----------ccceeeeEEEEEecCCCeEEEecC----------CCeEEEEEeecCceEEEEecccccc
Q 017773 264 SRV--IRTYKG----------HVNNRNFVGLSVWRHGGLLGCGSE----------TNQVFVYDVRWGEPVWVHDFEPVTA 321 (366)
Q Consensus 264 ~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 321 (366)
... +..+.. .......++++ |+++.+++... ++.|.++|+.+.+.+..+..+
T Consensus 296 ~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s--~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---- 369 (426)
T 3c75_H 296 EGATFRAPIEALTEAERADDWRPGGWQQTAYH--RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---- 369 (426)
T ss_dssp SCEEECCCEESSCTTTGGGTEEECSSSCEEEE--GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----
T ss_pred CceEEeeeeeeccccccccccccCCceeeEEc--CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----
Confidence 432 122110 00111224555 99887776532 357999999999999888643
Q ss_pred cCCCCceeeEEEeeccCCCce-EEEEeC-CCCcEEEEEecccCC
Q 017773 322 AGSERGFVSSVCWRRVGEDEC-TLVAGG-SDGLLHVFVGKKKPL 363 (366)
Q Consensus 322 ~~~~~~~v~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~l 363 (366)
....+++|+| ||+ ++++.. .++.|.++|+.+.++
T Consensus 370 -----~~P~gia~sp---Dg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 370 -----HEIDSINVSQ---DAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp -----EEECEEEECC---SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred -----CCcCeEEEcc---CCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 3588999999 888 777776 599999999987653
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=1.2e-13 Score=129.70 Aligned_cols=245 Identities=11% Similarity=0.003 Sum_probs=153.1
Q ss_pred CCCceEEEEECCCCCEEEEeecC-----CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIA-----RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|...+..++|||||++||.+..+ ..|++||+.+++.... .. . ...+..++|+|+ . .|+
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~----------~~~~~~~~wspD--~-~l~ 223 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--K----------WVKFSGLAWLGN--D-ALL 223 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--E----------EEESCCCEESTT--S-EEE
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--C----------CceeccEEEECC--C-EEE
Confidence 33478899999999999887654 3699999988764320 00 0 012357899996 4 444
Q ss_pred EEcCCC--------------cEEEEeCCCCce--eEeeecCCC-CceeeEEeccCCCceEEEecC----CCcEEEeeCCC
Q 017773 116 SGDYDG--------------VVMEYDLEKKVP--IFERDEHGG-RRVWSVDYSKGDPVLGASGSD----DGTMQMWDPRC 174 (366)
Q Consensus 116 ~~~~dg--------------~i~iw~~~~~~~--~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~~----dg~v~~~d~~~ 174 (366)
.++.++ .|++|++.++.. ...+..... ..+..+.|+|+|+++++++.. ...|++||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~- 302 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT- 302 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE-
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC-
Confidence 444433 389999987652 222222221 148899999999988555532 3489999998
Q ss_pred CCC--ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec----CCeEEEEecCCCC-CCeeEeecccCcEEEEEEcCCCEE
Q 017773 175 DGG--KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA----DKKAYAYDVRKMV-DPVLVFDGHRKTVTYIRFLDVDTL 247 (366)
Q Consensus 175 ~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l 247 (366)
++ +....+.. +........ +|+| ..|+..+. ++.|++||+.+.. .....+..+...+..+.+.++.++
T Consensus 303 -~~~~~~~~~l~~--~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv 377 (741)
T 1yr2_A 303 -NGKIGPVTALIP--DLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLF 377 (741)
T ss_dssp -TTEECCCEEEEC--SSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEE
T ss_pred -CCCCcccEEecC--CCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEE
Confidence 44 31333332 222344443 4887 45555443 4569999988741 333444445556667777766788
Q ss_pred EEEeCCCcEEEEecC-CCceeeeeecc-cceeeeEEEEEecCCCeEE----EecCCCeEEEEEeecCce
Q 017773 248 VTAGTDGCLKLWNVN-DSRVIRTYKGH-VNNRNFVGLSVWRHGGLLG----CGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~~~ 310 (366)
++...|+..++|.+. +++....+..+ ...+..+++ +|+++.|+ +....++|++||+.+++.
T Consensus 378 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~--s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 378 ASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG--RPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC--CBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec--CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888889987777654 45555666543 344444444 48888666 334457899999987763
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=1.7e-12 Score=110.05 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=174.5
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecCc
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
..+...|..+.+++.....+ ..+ . ++++|||++++++. .++.|.+||..+.+....+..-.+..
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG----~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r 132 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGG----FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 132 (386)
T ss_dssp EEEEEEETTTTEEEEEEEEC----SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CEEEEEECCCCeEEEEEECC----CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc
Confidence 46777788887776555433 233 4 99999999887765 35789999998866544221110000
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcC--CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY--DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
. ........++|+|+ |++++++.. ++.|.++|+.+++.+.++.... . ....|.+...+++.+.||
T Consensus 133 ~------~~g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~---~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 133 F------LVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C---YHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp C------CBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTS
T ss_pred c------ccCCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c---ceeecCCCceeEEECCCC
Confidence 0 00113456999999 998888763 6899999999999988886532 1 122354544447778899
Q ss_pred cEEEeeCCCCCCceeEeecCC--CCCCCeE-EEEEc-CCCCcEEEEEecCCeEEEEecCCCCC-CeeEee---c------
Q 017773 166 TMQMWDPRCDGGKCVSTVQPS--ASRSAVC-CVEFH-PFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFD---G------ 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~--~~~~~i~-~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~---~------ 231 (366)
.+.+.++.. .++........ ....++. ...|. ++| ++++ .+.+|.|++.|+.+... ....+. .
T Consensus 200 ~~~~v~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 200 SLAKVAFGT-EGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp CEEEEECCS-SSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CEEEEECCC-CCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 999999872 13332221110 1111221 23554 566 5544 45689999999976521 111111 0
Q ss_pred -ccCcEEEEEEc-CCCEEEEEeC----------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEE-ecCC
Q 017773 232 -HRKTVTYIRFL-DVDTLVTAGT----------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGC-GSET 297 (366)
Q Consensus 232 -~~~~v~~~~~~-~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~d 297 (366)
.......++++ +++.++.... .+.|.+.|+++++.+.++.... .+..++++ +|++ +|++ ...+
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs--~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVS--QDEKPLLYALSTGD 353 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEEC--SSSSCEEEEEETTT
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEEC--CCCCeEEEEEcCCC
Confidence 11233346667 6777666542 2579999999999999987543 45566666 9986 6655 4568
Q ss_pred CeEEEEEeecCceEEEEec
Q 017773 298 NQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 298 g~i~iwd~~~~~~~~~~~~ 316 (366)
+.|.++|..+++.+..+..
T Consensus 354 ~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TEEEEEETTTCCEEEEECC
T ss_pred CeEEEEECCCCcEEEEecC
Confidence 9999999999999888754
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=1e-11 Score=103.34 Aligned_cols=236 Identities=8% Similarity=-0.037 Sum_probs=161.7
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..+.++++.++ +.++++...++.|.+||.. ++............+.++++.+++..+ ++...++.|..+|.. +
T Consensus 20 ~~p~~i~~d~~--g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~~~~~v~~~d~~---g 92 (300)
T 2qc5_A 20 SGPYGITSSED--GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIW-FTENGANKIGKLSKK---G 92 (300)
T ss_dssp CCEEEEEECTT--SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEE-EEETTTTEEEEECTT---S
T ss_pred CCcceeeECCC--CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEE-EEecCCCeEEEECCC---C
Confidence 35789999998 8888887778999999988 544332111222378899999888755 666667889999976 3
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEc-CCCEEEEEeCCCc
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFL-DVDTLVTAGTDGC 255 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 255 (366)
+. ..+........+.++++.++| .++++...++.|..+|.. + +... .+......+..+++. +++++++...++.
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred Ce-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-C-CEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 32 233322233578999999988 677776668899999987 3 3322 222234568889998 7776666666788
Q ss_pred EEEEecCCCceeeeee--cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEE
Q 017773 256 LKLWNVNDSRVIRTYK--GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVC 333 (366)
Q Consensus 256 i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 333 (366)
|..+|. +++... +. .+...+..+++. ++|.+.++....+.|.+||. +++.... .. ..+...+.+++
T Consensus 169 i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~------~~~~~~~~~i~ 236 (300)
T 2qc5_A 169 IGRITN-TGKLEE-YPLPTNAAAPVGITSG--NDGALWFVEIMGNKIGRITT-TGEISEY-DI------PTPNARPHAIT 236 (300)
T ss_dssp EEEECT-TCCEEE-EECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCEEEE-EC------SSTTCCEEEEE
T ss_pred EEEECC-CCcEEE-eeCCCCCCCcceEEEC--CCCCEEEEccCCCEEEEEcC-CCcEEEE-EC------CCCCCCceEEE
Confidence 999998 554432 32 222334445554 89988887777788999998 5544332 11 12345688999
Q ss_pred eeccCCCceEEEEeCCCCcEEEEEec
Q 017773 334 WRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+.+ +|+++++...++.|..|+..
T Consensus 237 ~d~---~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGK---NSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECS---TTCEEEEETTTTEEEEECTT
T ss_pred ECC---CCCEEEeccCCCeEEEECCC
Confidence 998 77777777777889998864
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.60 E-value=2.3e-13 Score=126.81 Aligned_cols=244 Identities=16% Similarity=0.096 Sum_probs=155.4
Q ss_pred CceeEEEEecCCCCcEEEE-----EcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-------
Q 017773 98 AKLSSLKWKPGTSGRVLGS-----GDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG------- 165 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg------- 165 (366)
..+..++|+|+ |++|+- |+....|++||+++++.+....... ....++|+ |++.+ +.++.+.
T Consensus 129 ~~l~~~~~SpD--g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l-~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 129 TALDQLSFSRD--GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGF-FYSSYDKPDGSELS 202 (693)
T ss_dssp CEEEEEEECTT--SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEE-EEEESSCCC-----
T ss_pred EEEEEEEECCC--CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEE-EEEEecCccccccc
Confidence 35888999999 998884 3333679999999998654311110 23578999 99988 4444442
Q ss_pred ------cEEEeeCCCCCCceeEeecCCC-CCCCeEEEEEcCCCCcEEEEEec---CCeEEEEecCCCCCCeeEeecccCc
Q 017773 166 ------TMQMWDPRCDGGKCVSTVQPSA-SRSAVCCVEFHPFGSSLVAAGCA---DKKAYAYDVRKMVDPVLVFDGHRKT 235 (366)
Q Consensus 166 ------~v~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~ 235 (366)
.|++|++.+...+....+.... +......+.|+|+|..++++... ...|+++|+.++......+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 4999998843333344444333 44467889999999544454432 3589999998764455666666666
Q ss_pred EEEEEEcCCCEE-EEEeCC---CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecC-CC--eEEEEEee
Q 017773 236 VTYIRFLDVDTL-VTAGTD---GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSE-TN--QVFVYDVR 306 (366)
Q Consensus 236 v~~~~~~~~~~l-~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~ 306 (366)
......++++.| +....+ +.|..+|+.++.. ...+..|...+. .++ ++++.|+.... ++ .|++|++.
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s--~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH--SGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE--EETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE--EECCEEEEEEEECCeeEEEEEECC
Confidence 555533455554 444433 5799999987654 345666655542 444 88888776654 43 68888887
Q ss_pred cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC----CcEEEEEecccC
Q 017773 307 WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD----GLLHVFVGKKKP 362 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~ 362 (366)
.+ ....+.++ ..+.+..+.++| ++..|+....+ +.|+.||+.++.
T Consensus 359 g~-~~~~l~~p-------~~~~~~~~~~~~---d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 359 GK-RVREVALP-------GLGSVSGFNGKH---DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SC-EEEEECCS-------SSSEEEECCCCT---TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CC-eeEEeecC-------CCceEEeeecCC---CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 44 34444322 345677788877 55555544333 789999886643
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.58 E-value=7.7e-12 Score=104.12 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=145.7
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
..+..|+|+ .+.++++...++.|..||..+++. ..+... . .+.+++++++++.+ ++ . ++.|.+||.. +++.
T Consensus 15 ~Egp~w~~~-~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~-~-~~~~i~~~~dG~l~-v~-~-~~~l~~~d~~--~g~~ 85 (297)
T 3g4e_A 15 GESPVWEEV-SNSLLFVDIPAKKVCRWDSFTKQV-QRVTMD-A-PVSSVALRQSGGYV-AT-I-GTKFCALNWK--EQSA 85 (297)
T ss_dssp EEEEEEETT-TTEEEEEETTTTEEEEEETTTCCE-EEEECS-S-CEEEEEEBTTSSEE-EE-E-TTEEEEEETT--TTEE
T ss_pred ccCCeEECC-CCEEEEEECCCCEEEEEECCCCcE-EEEeCC-C-ceEEEEECCCCCEE-EE-E-CCeEEEEECC--CCcE
Confidence 567899996 266777777889999999988764 233322 3 79999999999844 43 3 5679999987 4443
Q ss_pred eEeecCC--CCCCCeEEEEEcCCCCcEEEEEec-----------CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 180 VSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCA-----------DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 180 ~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
....... .....+..++++|+| +++++... .+.|+.+|... + ...+..+....+.++|+ +++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~-~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDH--H-VKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTS--C-EEEEEEEESBEEEEEECTTSC
T ss_pred EEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCC--C-EEEEeeccccccceEEcCCCC
Confidence 3322221 122358899999998 55554422 23444444432 2 33333344567889999 787
Q ss_pred EE-EEEeCCCcEEEEec--CCCce-----eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 246 TL-VTAGTDGCLKLWNV--NDSRV-----IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 246 ~l-~~~~~d~~i~iwd~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.| ++.+.++.|.+||+ .++.. +..+..+......+++. ++|++.++...++.|..||..+++.+..+..+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d--~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID--AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB--TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC--CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 66 45566789999987 44432 22222233344455555 99988888777889999999989888777532
Q ss_pred cccccCCCCceeeEEEee-ccCCCceEEEE
Q 017773 318 PVTAAGSERGFVSSVCWR-RVGEDECTLVA 346 (366)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~-~~~~~~~~l~s 346 (366)
...+++++|. | +++.|+.
T Consensus 240 --------~~~~t~~~f~g~---d~~~L~v 258 (297)
T 3g4e_A 240 --------VDKTTSCCFGGK---NYSEMYV 258 (297)
T ss_dssp --------SSBEEEEEEESG---GGCEEEE
T ss_pred --------CCCceEEEEeCC---CCCEEEE
Confidence 3578999998 7 6555443
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=7e-12 Score=108.97 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=160.6
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDPRCD 175 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~~~~ 175 (366)
.....++|+++ ++++++...++.|+.||++++.......... ... ++|+++++.+ +++..++ .|.+++..
T Consensus 131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~~~g~~l-~~~d~~~~~~I~~~d~~-- 202 (409)
T 3hrp_A 131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNKVTTVHPGFK--GGK-PAVTKDKQRV-YSIGWEGTHTVYVYMKA-- 202 (409)
T ss_dssp CCEEEEEECST--TEEEEEETTTTEEEEEETTTTEEEEEEETCC--BCB-CEECTTSSEE-EEEBSSTTCEEEEEEGG--
T ss_pred CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCEEEEeeccCC--CCc-eeEecCCCcE-EEEecCCCceEEEEEcC--
Confidence 35788999998 8888888888999999998877655544432 344 9999999987 5555544 78888877
Q ss_pred CCceeEee-cC-CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEe-----ecccCc--EEEEEEc-C-C
Q 017773 176 GGKCVSTV-QP-SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVF-----DGHRKT--VTYIRFL-D-V 244 (366)
Q Consensus 176 ~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~--v~~~~~~-~-~ 244 (366)
.......+ .. ......+.+++++|++..+++ +..++.|+.||..+.. ...+ .++... ...++|+ + +
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCC
Confidence 34333333 11 113346788999995434444 6678899999998752 2222 112222 2389998 3 4
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeeccc---------------ceeeeEEEEEecCCCeEEEec-CCCeEEEEEeecC
Q 017773 245 DTLVTAGTDGCLKLWNVNDSRVIRTYKGHV---------------NNRNFVGLSVWRHGGLLGCGS-ETNQVFVYDVRWG 308 (366)
Q Consensus 245 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 308 (366)
.++++-..++.|+.|+.... +..+.++. .....+++. |+|+++++-. .++.|+.|++.++
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d--~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD--EDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC--TTCCEEEEETTTTCEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe--CCCCEEEEeCCCCCEEEEEECCCC
Confidence 55566667889999987543 33333321 123345554 9999888887 8899999998777
Q ss_pred ceEEEEecccccc------cCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 309 EPVWVHDFEPVTA------AGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 309 ~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+............ ....-....+++++| +|.++++-..++.|+.++++
T Consensus 356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~---~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG---EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS---SSEEEEEESTTCEEEEEEEC
T ss_pred EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC---CCCEEEEECCCCeEEEEEeC
Confidence 6543322100000 001124588999999 88899998889999988764
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=2.3e-13 Score=115.71 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=131.8
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
..+++.+++++...++++|+.++ +++|++++......... .... ......++. |+.++| + +.+|+++ .++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~-~~~~--~~~~~~lp~-V~~l~f--d--~~~L~v~-~~~ 106 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS-TPLT--FKWEKEIPD-VIFVCF--H--GDQVLVS-TRN 106 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS-CCCC--CSEEEECTT-EEEEEE--E--TTEEEEE-ESS
T ss_pred cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc-cccc--ceEEeeCCC-eeEEEE--C--CCEEEEE-cCC
Confidence 34799999999999999999874 67799876541100000 0000 011233556 999999 6 8899998 789
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|++||+.+.........+.. ++.++.+.+. .+ ++++.||.|.+||+. .+.... + ...|+|++|+|+|
T Consensus 107 ~l~v~dv~sl~~~~~~~~~~~-~v~~i~~~~p--~~-av~~~dG~L~v~dl~--~~~~~~-~-----~~~Vs~v~WSpkG 174 (388)
T 1xip_A 107 ALYSLDLEELSEFRTVTSFEK-PVFQLKNVNN--TL-VILNSVNDLSALDLR--TKSTKQ-L-----AQNVTSFDVTNSQ 174 (388)
T ss_dssp EEEEEESSSTTCEEEEEECSS-CEEEEEECSS--EE-EEEETTSEEEEEETT--TCCEEE-E-----EESEEEEEECSSE
T ss_pred cEEEEEchhhhccCccceeec-ceeeEEecCC--CE-EEEECCCCEEEEEcc--CCcccc-c-----cCCceEEEEcCCc
Confidence 999999987765555666665 7888877654 35 888999999999998 555443 2 2389999999987
Q ss_pred CcEEEEEecCCeEEEEecCCCCCC--eeEe------e---cccCcEEEEEEc-CCCEEEEE
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDP--VLVF------D---GHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~--~~~~------~---~~~~~v~~~~~~-~~~~l~~~ 250 (366)
++.|..||++++|+.... .. ...+ . +|...|.++.|. ++.++++-
T Consensus 175 ---~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 175 ---LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ---EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ---eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 567889999999988775 22 3344 2 367889999999 76666653
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.55 E-value=1.1e-12 Score=122.21 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=154.0
Q ss_pred CCCceEEEEECCCCCEEEEe-----ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEE
Q 017773 41 VSDSIGVIEFDPSDSVFATG-----GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLG 115 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 115 (366)
|...+..++|||||++||.+ +....|++||+.+++.... .... .....++|+ | ++.|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~------------~k~~~~~Ws-D--g~~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD------------VKFSGISWL-G--NEGFF 189 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE------------EESCCCEEE-T--TTEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC------------ceeccEEEe-C--CCEEE
Confidence 56689999999999988843 3335799999998764321 1110 013568899 8 88888
Q ss_pred EEcCCC-------------cEEEEeCCCCce----eEeeec-CCCCceeeEEeccCCCceEEEecC---CCcEEEeeCCC
Q 017773 116 SGDYDG-------------VVMEYDLEKKVP----IFERDE-HGGRRVWSVDYSKGDPVLGASGSD---DGTMQMWDPRC 174 (366)
Q Consensus 116 ~~~~dg-------------~i~iw~~~~~~~----~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~~---dg~v~~~d~~~ 174 (366)
.++.+. .|++|++.++.. +..... +.. .+..+.|+|++++++++... +..|+++|+..
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHH-RYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCC-SEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCe-EEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 877664 499999987643 222222 222 47789999999998666543 35899999973
Q ss_pred CCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC---CeEEEEecCCCCC-CeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 175 DGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD---KKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
...+ ...+.. +....... ++++|+.+++....+ +.|..+|+.++.. ....+..|...+. .|+ +++.|+.
T Consensus 269 ~~~~-~~~l~~--~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 269 ENAP-LLTVQG--DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TTCC-CEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCc-eEEEeC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 2223 333332 22244443 666665666666543 6899999987622 1345555665554 676 6676665
Q ss_pred EeC-CC--cEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCC----CeEEEEEeecCceE
Q 017773 250 AGT-DG--CLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSET----NQVFVYDVRWGEPV 311 (366)
Q Consensus 250 ~~~-d~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 311 (366)
... ++ .|++||+..+ ....+.. ....+. .+++++++..++....+ +.|..||+.+++..
T Consensus 343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~--~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGK-RVREVALPGLGSVS--GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEECTTSC-EEEEECCSSSSEEE--ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCeeEEEEEECCCC-eeEEeecCCCceEE--eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 554 44 6889998744 3444432 223333 33444788776655443 78999998777643
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=1.7e-11 Score=102.04 Aligned_cols=226 Identities=8% Similarity=0.003 Sum_probs=147.2
Q ss_pred ceEEEEECCC-CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCc
Q 017773 44 SIGVIEFDPS-DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGV 122 (366)
Q Consensus 44 ~i~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 122 (366)
-.-...|+|+ +.++++...++.|..|+..++... ... ....+.+++++|+ ++++++. ++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-----------~~~~~~~i~~~~d--G~l~v~~--~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RVT-----------MDAPVSSVALRQS--GGYVATI--GTK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEE-----------CSSCEEEEEEBTT--SSEEEEE--TTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EEe-----------CCCceEEEEECCC--CCEEEEE--CCe
Confidence 3567889985 456666667889999998765331 111 1246899999998 8855554 567
Q ss_pred EEEEeCCCCceeEeeecC---CCCceeeEEeccCCCceEEEe-cC--------CCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 123 VMEYDLEKKVPIFERDEH---GGRRVWSVDYSKGDPVLGASG-SD--------DGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 123 i~iw~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~-~~--------dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
|.+||.++++........ ....+.++++.|+|+.+ ++. .. ...-.+|.+.. .++...... ...
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~-~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~~~~---~~~ 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYF-AGTMAEETAPAVLERHQGALYSLFP-DHHVKKYFD---QVD 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEE-EEEEECCSBTTBCCTTCEEEEEECT-TSCEEEEEE---EES
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEE-EecCCcccccccccCCCcEEEEEEC-CCCEEEEee---ccc
Confidence 999999887654332221 12258899999999865 433 21 12234554441 133322222 223
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecC--CCCCC-----eeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecC
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVR--KMVDP-----VLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVN 262 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~-----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~ 262 (366)
....++|+|++..++++.+.++.|.+||+. ++ .. ...+..+......+++. ++++.++...++.|..||..
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 678999999995566677778999999974 33 21 12223344567889998 88877777778899999999
Q ss_pred CCceeeeeecccceeeeEEEEEecCCCeEEEec
Q 017773 263 DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
+++.+..+..+...+.+++|. -|+++.|+..+
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~-g~d~~~L~vt~ 260 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFG-GKNYSEMYVTC 260 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEE-SGGGCEEEEEE
T ss_pred CceEEEEEECCCCCceEEEEe-CCCCCEEEEEc
Confidence 899998888775566666554 16666655443
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=5.4e-12 Score=107.34 Aligned_cols=269 Identities=10% Similarity=-0.021 Sum_probs=166.1
Q ss_pred CceEEEEECCCCCEEEEee--cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC-
Q 017773 43 DSIGVIEFDPSDSVFATGG--IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY- 119 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~- 119 (366)
..+..++++|+|+++++.. .++.++||.+.++.. ..+.... .....+-..+..++++++ ++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~----~~~p~~~---~~~~~~~~~p~gv~~d~~--g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL----IPFPPQS---GNAIITFDTVLGIKSDGN--GIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE----EESCCCC---SSCCCCCSCEEEEEECSS--SEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe----ecCCCcc---cCcccceeEeeEEEEcCC--CcEEEEcCCC
Confidence 5689999999999988864 234467777763221 1111100 001133457999999998 877666543
Q ss_pred ----CCcEEEEeCCCCceeEeeecCC-----CCceeeEEeccCCCceEEEec---CCCcEEEeeCCCCCCceeEeecCCC
Q 017773 120 ----DGVVMEYDLEKKVPIFERDEHG-----GRRVWSVDYSKGDPVLGASGS---DDGTMQMWDPRCDGGKCVSTVQPSA 187 (366)
Q Consensus 120 ----dg~i~iw~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~~~---~dg~v~~~d~~~~~~~~~~~~~~~~ 187 (366)
++.|.+||+.+++.+..+.... ...+..+++.+++..++++.. .++.|.+||+. +++....+....
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~--~g~~~r~~~~~~ 165 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ--TGLAARVLQGYP 165 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT--TCCEEEECTTCT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC--CCCEEEEecCCC
Confidence 5789999999888766654321 124688999987666656655 67899999998 666655553210
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCC-cEEEEecC---
Q 017773 188 SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG-CLKLWNVN--- 262 (366)
Q Consensus 188 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~iwd~~--- 262 (366)
...+ ....+.++| ..+.+...++.+..|. ..+..|+++ +++.|+.+..++ .+..++..
T Consensus 166 ~~~~-~~~~~~~~g-~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~ 228 (343)
T 2qe8_A 166 GIAP-EDIDLVIDG-VPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS 228 (343)
T ss_dssp TTSC-CSCCCEETT-EECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred cccc-cccceeECC-EEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence 1000 013344455 5666666666664442 235789999 888888777666 45444432
Q ss_pred CC-----ceee--eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 263 DS-----RVIR--TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 263 ~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
.+ +... ...++......+++. ++|.++++...++.|.+||..+++...... ..+...+.+++|.
T Consensus 229 ~~~~~~~~~~~~~~~~g~~g~pdgia~d--~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~~~~~~p~~va~~ 299 (343)
T 2qe8_A 229 NLQLTDAELGSKIERYSEKPICDGISID--KDHNIYVGDLAHSAIGVITSADRAYKLLVT-------DEKLSWTDSFNFG 299 (343)
T ss_dssp CTTCCHHHHHTTCEEEEECCSCSCEEEC--TTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------CGGGSCEEEEEEC
T ss_pred CCCCChhhhhcceEecccCCCCceEEEC--CCCCEEEEccCCCeEEEEECCCCCEEEEEE-------CCceecCCeeEEC
Confidence 11 1111 111222233456665 999999999899999999985565432221 1124568899999
Q ss_pred ccCCCceEEEEeCCCC
Q 017773 336 RVGEDECTLVAGGSDG 351 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg 351 (366)
+ +++++++.+..+
T Consensus 300 ~---~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 S---DGYLYFDCNQLH 312 (343)
T ss_dssp T---TSCEEEEECCGG
T ss_pred C---CCcEEEEeCccc
Confidence 8 777887776443
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=7.5e-13 Score=112.61 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=130.7
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCC---------CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeE
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG---------GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKA 214 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 214 (366)
++..+++++....+ ++|+.+ .+.+|++..-. .+...... ... |+.++| ++ ..|+++ .++.|
T Consensus 39 ~~nlLais~~~gll-~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~-~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLF-VAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HG-DQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEE-EEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ET-TEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEE-EEeCCC-EEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CC-CEEEEE-cCCcE
Confidence 68899999988876 777776 56679875111 11112222 344 999999 66 788888 88999
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
++||+++.. .......|..++..+.+...+ ++++..||.|.+||++++.... +...+.+++|+ |+| ++.|
T Consensus 109 ~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS--pkG--~~vg 178 (388)
T 1xip_A 109 YSLDLEELS-EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT--NSQ--LAVL 178 (388)
T ss_dssp EEEESSSTT-CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC--SSE--EEEE
T ss_pred EEEEchhhh-ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEc--CCc--eEEE
Confidence 999999873 555666788888888877333 8889999999999999887643 33466666666 999 6778
Q ss_pred cCCCeEEEEEeecCce--EEEEecccccc-cCCCCceeeEEEeeccCCCceEEEE
Q 017773 295 SETNQVFVYDVRWGEP--VWVHDFEPVTA-AGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 295 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
..||.+++|+...++. ...+..++... ..+|...|.++.|.+ ++.+|++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~---~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS---PQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS---SSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec---CCeEEEE
Confidence 8999999999887775 44443322110 124778999999999 7778876
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.52 E-value=1e-11 Score=107.20 Aligned_cols=271 Identities=14% Similarity=0.047 Sum_probs=176.4
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecCc
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDHS 87 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~ 87 (366)
..+...|+.+.+++.....+ ..+ .++++|||++|+++. .++.|.++|..+.+....+. +.+..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCC
T ss_pred CeEEEEECCCCEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCcc
Confidence 57778888888887666543 234 799999999888875 36789999998876544221 11000
Q ss_pred eeceeeeecCCceeEEEEecCCCCcEEEEEcC--CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC
Q 017773 88 KVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY--DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
.. ........+.|+|+ |++|+++.. ++.|.+.|+.+++.+..+.... . ....|+++..+++.+.||
T Consensus 172 r~-----~~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~---~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 172 RF-----LVGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C---YHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CC-----CBSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTS
T ss_pred cc-----ccCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c---eeeccCCCcEEEEEcCCC
Confidence 00 00012456899999 999988764 5789999999999888876532 1 334455555557777888
Q ss_pred cEEEeeCCCCCCceeEe----ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC-eeEeec---------
Q 017773 166 TMQMWDPRCDGGKCVST----VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP-VLVFDG--------- 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~--------- 231 (366)
.+.+.+.. .++.... +..... .....+.+.+++..++ .....+.+++.|....... ...+..
T Consensus 240 ~~~~V~~~--~~~v~~~~~~~~~v~~~-p~~~~~~~~~dg~~~~-~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 240 SLARVDFA--DGETKVTNTEVFHTEDE-LLINHPAFSLRSGRLV-WPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp SEEEEECC--TTCCEEEECCCCSCTTS-CBCSCCEECTTTCEEE-EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred CEEEEECC--CCcEEEEeeeeeccCCC-ceeeEeeecCCCCEEE-EEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 88888885 4444422 111111 1112356788884444 4457889999998654110 011100
Q ss_pred -ccCcEEEEEEc-CCCEEEEEeC----------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEEec-CC
Q 017773 232 -HRKTVTYIRFL-DVDTLVTAGT----------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGS-ET 297 (366)
Q Consensus 232 -~~~~v~~~~~~-~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~d 297 (366)
.......++++ +++.+++... ++.|.++|..+.+.+.++.... ....+.++ ||++ ++++.. .+
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~s--pDg~~~lyv~n~~s 392 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVS--QDAEPLLYALSAGT 392 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEEC--CSSSCEEEEEETTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEc--cCCCEEEEEEcCCC
Confidence 01112235777 7676665532 3579999999999999987543 24455665 9999 888777 58
Q ss_pred CeEEEEEeecCceEEEE
Q 017773 298 NQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 298 g~i~iwd~~~~~~~~~~ 314 (366)
+.|.++|+.+++.+..+
T Consensus 393 ~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEe
Confidence 99999999999988775
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=3.7e-11 Score=100.41 Aligned_cols=224 Identities=13% Similarity=0.059 Sum_probs=144.9
Q ss_pred CceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC
Q 017773 98 AKLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG 176 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~ 176 (366)
.......|+|+ ++ ++++...++.|..|+.. ++ ...+..... .+..+++.++++.+ ++...++.|.+|+..
T Consensus 45 ~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~-~~~gl~~d~dG~l~-v~~~~~~~v~~~~~~--- 115 (305)
T 3dr2_A 45 TWSEGPAWWEA--QRTLVWSDLVGRRVLGWRED-GT-VDVLLDATA-FTNGNAVDAQQRLV-HCEHGRRAITRSDAD--- 115 (305)
T ss_dssp SSEEEEEEEGG--GTEEEEEETTTTEEEEEETT-SC-EEEEEESCS-CEEEEEECTTSCEE-EEETTTTEEEEECTT---
T ss_pred cCccCCeEeCC--CCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCC-ccceeeECCCCCEE-EEECCCCEEEEECCC---
Confidence 34678999998 77 67788888999999984 44 333444444 78999999998844 655566789999975
Q ss_pred CceeEeec--CCCCCCCeEEEEEcCCCCcEEEE----Eec-------------CCeEEEEecCCCCCCeeEeecccCcEE
Q 017773 177 GKCVSTVQ--PSASRSAVCCVEFHPFGSSLVAA----GCA-------------DKKAYAYDVRKMVDPVLVFDGHRKTVT 237 (366)
Q Consensus 177 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~v~ 237 (366)
++...... .......+..++++|+| .++++ |.. .+.|+.+|..++ +... +. .....+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~-~~-~~~~p~ 191 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQR-MA-DLDHPN 191 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEE-EE-EESSEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEE-Ee-cCCCCc
Confidence 33222211 11112357789999998 67765 332 356888887665 3332 22 445668
Q ss_pred EEEEc-CCCEEEEEeCC------CcEEEEecCCCceee---eee-cccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 238 YIRFL-DVDTLVTAGTD------GCLKLWNVNDSRVIR---TYK-GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 238 ~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
.++|+ +++.|+.+... +.|.+|++.... +. .+. ........+++. ++|++.++. .+ .|.+|+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d--~~G~lwv~~-~~-gv~~~~~- 265 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVD--RGGWLWSSS-GT-GVCVFDS- 265 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEEC--TTSCEEECC-SS-EEEEECT-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEEC--CCCCEEEec-CC-cEEEECC-
Confidence 89999 88877776655 789999987653 21 111 111222345555 899855444 44 4999997
Q ss_pred cCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCc
Q 017773 307 WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGL 352 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 352 (366)
.++.+..+..+ ..+.+++|+| +++.|..++.++.
T Consensus 266 ~g~~~~~~~~~---------~~~~~~~f~~---d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTP---------GTASNCTFDQ---AQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECS---------SCCCEEEECT---TSCEEEEEETTEE
T ss_pred CCCEEEEEECC---------CceeEEEEeC---CCCEEEEEcCCeE
Confidence 56666665432 2488999997 7777777766653
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=7.7e-11 Score=99.42 Aligned_cols=223 Identities=14% Similarity=0.031 Sum_probs=141.9
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
..+..|+|+ .+.++++...++.|..||..+++.. .+.. .. .+.++++.++++.+ ++. .+ .|.+||.. +++.
T Consensus 51 ~egp~~~~~-~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~-~v~~i~~~~dg~l~-v~~-~~-gl~~~d~~--~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNILERELHELHLASGRKT-VHAL-PF-MGSALAKISDSKQL-IAS-DD-GLFLRDTA--TGVL 121 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SS-CEEEEEEEETTEEE-EEE-TT-EEEEEETT--TCCE
T ss_pred CcCCeEeCC-CCEEEEEECCCCEEEEEECCCCcEE-EEEC-CC-cceEEEEeCCCeEE-EEE-CC-CEEEEECC--CCcE
Confidence 457889996 2566777777899999999877543 2332 23 79999999998765 443 33 49999987 5554
Q ss_pred eEeecCC--CCCCCeEEEEEcCCCCcEEEEEec------CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEE-
Q 017773 180 VSTVQPS--ASRSAVCCVEFHPFGSSLVAAGCA------DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVT- 249 (366)
Q Consensus 180 ~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~- 249 (366)
....... .....+..++++|+| +++++... .+.|+.++ ++ ....+..+......++|+ +++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g--~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KG--KVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TT--EEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CC--cEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 3332221 112368899999998 55554432 24566666 33 233333344567889999 8876654
Q ss_pred EeCCCcEEEEecC--CC-ce-----eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccc
Q 017773 250 AGTDGCLKLWNVN--DS-RV-----IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTA 321 (366)
Q Consensus 250 ~~~d~~i~iwd~~--~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 321 (366)
.+.++.|.+||+. ++ .. +..+.........+++. ++|.+.++...++.|..||. +++.+..+..
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d--~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~----- 268 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD--AEGHIWNARWGEGAVDRYDT-DGNHIARYEV----- 268 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC--TTSCEEEEEETTTEEEEECT-TCCEEEEEEC-----
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC--CCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-----
Confidence 4557899999986 55 32 22222222333444444 89988777766788999998 5766655543
Q ss_pred cCCCCceeeEEEee-ccCCCceEE-EEeCCC
Q 017773 322 AGSERGFVSSVCWR-RVGEDECTL-VAGGSD 350 (366)
Q Consensus 322 ~~~~~~~v~~~~~~-~~~~~~~~l-~s~~~d 350 (366)
+...+.+++|. | ++..| ++...+
T Consensus 269 ---~~~~~~~~af~g~---d~~~L~vt~~~~ 293 (326)
T 2ghs_A 269 ---PGKQTTCPAFIGP---DASRLLVTSARE 293 (326)
T ss_dssp ---SCSBEEEEEEEST---TSCEEEEEEBCT
T ss_pred ---CCCCcEEEEEecC---CCCEEEEEecCC
Confidence 23569999998 7 65555 444433
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.50 E-value=2.3e-10 Score=98.60 Aligned_cols=296 Identities=12% Similarity=0.019 Sum_probs=176.1
Q ss_pred ccceeeeeecCCCceeeecCCCCcc---C--CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceec
Q 017773 16 NERARCEWDFNLRTTVSSSSSPNAA---V--SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVC 90 (366)
Q Consensus 16 ~~~~~~~w~~~~~~~~~~~~~~~~~---h--~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.+..+..++.++++++......... + ...+.+.- ..++..++.++.++.|..+|..+++... .......
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W---~~~~~~~-- 134 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAW---QTKVAGE-- 134 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEE---EEECSSC--
T ss_pred CCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEE---EEeCCCc--
Confidence 3446666777666655433221100 0 12232221 1234567778889999999998876543 1111110
Q ss_pred eeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCce-----eeEEeccCCCceEEEecCCC
Q 017773 91 DYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRV-----WSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~~dg 165 (366)
........ +..++.++.++.|..+|..+++.+........ .. ...... +..+ +.+..++
T Consensus 135 --------~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v-~~g~~~g 198 (376)
T 3q7m_A 135 --------ALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAA-VVGGDNG 198 (376)
T ss_dssp --------CCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEE-EECCTTT
T ss_pred --------eEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEE-EEEcCCC
Confidence 01111122 44777788899999999999988777655432 11 122222 3444 7788899
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCC-----eEEEEEcC--CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEE
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSA-----VCCVEFHP--FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTY 238 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 238 (366)
.+..+|.. +++.+........... +..+...| .+ ..++.++.++.++.+|.+++ +.+.... ......
T Consensus 199 ~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG-~~~w~~~--~~~~~~ 272 (376)
T 3q7m_A 199 RVSAVLME--QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSG-QIMWKRE--LGSVND 272 (376)
T ss_dssp EEEEEETT--TCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTC-CEEEEEC--CCCEEE
T ss_pred EEEEEECC--CCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCC-cEEeecc--CCCCCC
Confidence 99999998 7777766653321000 00000111 12 46777778999999999887 4443333 223344
Q ss_pred EEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecc-cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 239 IRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH-VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 239 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
+.. ++..++.++.++.|..+|..+++.+...... ........+ .+..|+.++.+|.|.++|..+++.+......
T Consensus 273 ~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~----~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 273 FIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL----YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp EEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred ceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE----ECCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 433 4667888888999999999999887766522 112222222 3567888889999999999999998877542
Q ss_pred cccccCCCCceee-EEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 318 PVTAAGSERGFVS-SVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 318 ~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
. ..+. ..... ++ .|+.++.+|.|+.|+
T Consensus 348 ~--------~~~~~~~~~~----~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 348 S--------SGFQTEPVAA----DG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp T--------TCBCSCCEEE----TT-EEEEEBTTSCEEEEE
T ss_pred C--------CcceeCCEEE----CC-EEEEEeCCCEEEEEe
Confidence 1 1222 12221 33 677788899999886
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.47 E-value=2.6e-10 Score=105.44 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=175.1
Q ss_pred CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC------CCcEEEE
Q 017773 53 SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY------DGVVMEY 126 (366)
Q Consensus 53 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iw 126 (366)
++..|++++.|+.|..+|..+++.... ......... ...+.+--... +..++.++. ++.|..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~---~~~~~~~~~-----~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWH---QNTFEGQKG-----SLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE---EETTTTCCS-----SCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEee---ecCCcCcCc-----CcccccCcEEE---CCEEEEEecccccCCCCEEEEE
Confidence 355788888899999999998876542 221100000 00111100111 334455443 6899999
Q ss_pred eCCCCceeEeeecCCCC-------------------------------ceeeEEeccCCCceEEEecCCC----------
Q 017773 127 DLEKKVPIFERDEHGGR-------------------------------RVWSVDYSKGDPVLGASGSDDG---------- 165 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-------------------------------~v~~i~~~~~~~~l~~~~~~dg---------- 165 (366)
|..+++.+..+...... ....+++.+++..+ +.+..++
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~v-y~~~~~~~~w~~~~~~~ 274 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTM-YVGTGNGSPWSHKVRSP 274 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHST
T ss_pred ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEE-EEECCCCccccCCCCCc
Confidence 99999988776543210 11246788887776 6665553
Q ss_pred ---------cEEEeeCCCCCCceeEeecCCCCC-------CCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCCCCCee
Q 017773 166 ---------TMQMWDPRCDGGKCVSTVQPSASR-------SAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 166 ---------~v~~~d~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~ 227 (366)
.|..+|.. +++.+..++...+. .....+....+|. ..++.++.+|.++++|.+++ +.+.
T Consensus 275 ~~gd~~~~~sv~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~ 351 (677)
T 1kb0_A 275 KGGDNLYLASIVALDPD--TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFIS 351 (677)
T ss_dssp TCCCCTTTTEEEEECTT--TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEE
T ss_pred cCCCCeeeEEEEEEECC--CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEec
Confidence 48899998 88888887654331 1222233333553 57888999999999999988 4544
Q ss_pred Eeeccc-----------CcE------------------------EEEEEc-CCCEEEEEeC-------------------
Q 017773 228 VFDGHR-----------KTV------------------------TYIRFL-DVDTLVTAGT------------------- 252 (366)
Q Consensus 228 ~~~~~~-----------~~v------------------------~~~~~~-~~~~l~~~~~------------------- 252 (366)
.+.... .++ ..++++ +..++++...
T Consensus 352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~ 431 (677)
T 1kb0_A 352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP 431 (677)
T ss_dssp EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence 433110 011 135666 5566666433
Q ss_pred ------------------------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 253 ------------------------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 253 ------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
.|.|..||+.+++.+-++.... +.....+. .++.+++.++.||.+++||..++
T Consensus 432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~--~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT--TAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE--ETTTEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceE--eCCCEEEEECCCCcEEEEECCCC
Confidence 2789999999999888876432 33333444 67888888999999999999999
Q ss_pred ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe-CC----------------CCcEEEEEecc
Q 017773 309 EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG-GS----------------DGLLHVFVGKK 360 (366)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-~~----------------dg~i~iw~~~~ 360 (366)
+.++.+..+. ...-.-+.|.+ +|+.++.. +. .+.+..|.+..
T Consensus 509 ~~lw~~~~~~-------~~~~~p~~y~~---~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 509 EKLWEAPTGT-------GVVAAPSTYMV---DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CEEEEEECSS-------CCCSCCEEEEE---TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred ceeeeeeCCC-------CcccCCEEEEe---CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999887542 22233455656 66544432 21 36788888764
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=2.6e-10 Score=96.16 Aligned_cols=221 Identities=12% Similarity=0.043 Sum_probs=139.9
Q ss_pred eEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 45 IGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 45 i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
....+|+|++ .++++...++.|..|+..+++.. .+. .+..+.+++|+|+ ++++++. .+ .|
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-----------~~~~v~~i~~~~d--g~l~v~~-~~-gl 111 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-----------LPFMGSALAKISD--SKQLIAS-DD-GL 111 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-----------CSSCEEEEEEEET--TEEEEEE-TT-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-----------CCCcceEEEEeCC--CeEEEEE-CC-CE
Confidence 4678899974 56666667889999998764321 111 1235899999998 8877765 34 49
Q ss_pred EEEeCCCCceeEeeec---CCCCceeeEEeccCCCceEEEecC------CCcEEEeeCCCCCCceeEeecCCCCCCCeEE
Q 017773 124 MEYDLEKKVPIFERDE---HGGRRVWSVDYSKGDPVLGASGSD------DGTMQMWDPRCDGGKCVSTVQPSASRSAVCC 194 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~ 194 (366)
.+||..+++....... .....+.+++++|+|+.+ ++... .+.|..++ . ++...... .......
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l~~~~-~---g~~~~~~~---~~~~~~~ 183 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA-K---GKVTKLFA---DISIPNS 183 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE-T---TEEEEEEE---EESSEEE
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEEEEEe-C---CcEEEeeC---CCcccCC
Confidence 9999988765433221 112268899999999865 44321 24455555 2 33322221 1225678
Q ss_pred EEEcCCCCcEEEEEecCCeEEEEecC--CC-CC----CeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce
Q 017773 195 VEFHPFGSSLVAAGCADKKAYAYDVR--KM-VD----PVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV 266 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~d~~i~i~d~~--~~-~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 266 (366)
++|+|++..++++.+.++.|.+||+. ++ .. ....+.........+++. ++.+.++...++.|.+||. +++.
T Consensus 184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence 99999984455555667899999986 33 11 111222234556788888 7777777666788999998 6777
Q ss_pred eeeeecccceeeeEEEEEecCCCeEEEe
Q 017773 267 IRTYKGHVNNRNFVGLSVWRHGGLLGCG 294 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (366)
+..+..+...+..++|. .++++.|+.+
T Consensus 263 ~~~i~~~~~~~~~~af~-g~d~~~L~vt 289 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFI-GPDASRLLVT 289 (326)
T ss_dssp EEEEECSCSBEEEEEEE-STTSCEEEEE
T ss_pred EEEEECCCCCcEEEEEe-cCCCCEEEEE
Confidence 77777665555555543 1676665444
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.45 E-value=1.1e-11 Score=105.29 Aligned_cols=252 Identities=9% Similarity=-0.028 Sum_probs=164.6
Q ss_pred eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc----------CCCcEEEEeCCCCcee
Q 017773 65 KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD----------YDGVVMEYDLEKKVPI 134 (366)
Q Consensus 65 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~ 134 (366)
.|.+.|..+.+... .+... ..+ .+.++|+ +++++++. .++.|.+||+.+++.+
T Consensus 47 ~vsvID~~t~~v~~---~i~vG----------~~P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 47 ENWVSCAGCGVTLG---HSLGA----------FLS--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEEETTTTEEEE---EEEEC----------TTC--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCeEEE---EEeCC----------CCC--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 78899988766544 22111 124 6999999 88888875 3688999999999999
Q ss_pred EeeecCC------CCceeeEEeccCCCceEEEecC-CCcEEE--eeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEE
Q 017773 135 FERDEHG------GRRVWSVDYSKGDPVLGASGSD-DGTMQM--WDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLV 205 (366)
Q Consensus 135 ~~~~~~~------~~~v~~i~~~~~~~~l~~~~~~-dg~v~~--~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 205 (366)
.++.... ......++++|++++++++... +..+.+ +|+. + +..+...+ . ....|++...+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~--t---v~~i~v~~---~---~~~~p~g~~~~ 178 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS--D---DQLTKSAS---C---FHIHPGAAATH 178 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE--E---EEEEECSS---C---CCCEEEETTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh--h---ceEEECCC---c---eEEccCCCeEE
Confidence 9886541 1145689999999998444333 467888 9988 3 45554322 1 22446665677
Q ss_pred EEEecCCeEEEEecCC----CCCCee----EeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCC--ceeeeeecc--
Q 017773 206 AAGCADKKAYAYDVRK----MVDPVL----VFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDS--RVIRTYKGH-- 273 (366)
Q Consensus 206 ~~~~~d~~i~i~d~~~----~~~~~~----~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~-- 273 (366)
++.+.|+.+.+.|+.+ ..+... .+.....+. ...++..++..+. +.+.+.|.... +.+..+...
T Consensus 179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~ 254 (368)
T 1mda_H 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES 254 (368)
T ss_dssp ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence 7777889988888876 212211 111123343 3445566555556 89999998653 233322210
Q ss_pred -----c---ceeeeEEEEEecCCCeEEEecC---------CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 274 -----V---NNRNFVGLSVWRHGGLLGCGSE---------TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 274 -----~---~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
. .....++++ |+++.++.+.. ++.+.++|+.+++.+..+..+ ....+++|+|
T Consensus 255 ~~~~~~~~p~g~~~v~~s--~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------~~p~gi~~s~ 323 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKL--KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------HDSDAIIAAQ 323 (368)
T ss_dssp HHHHTTEEECSSSCEEEE--TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------EEECEEEECC
T ss_pred cccccccccCcceeeEEc--CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---------CCcceEEECC
Confidence 0 111124555 99988876532 235669999999988776542 2588999999
Q ss_pred cCCCce-EEEEeC-CCCcEEEEEecccC
Q 017773 337 VGEDEC-TLVAGG-SDGLLHVFVGKKKP 362 (366)
Q Consensus 337 ~~~~~~-~l~s~~-~dg~i~iw~~~~~~ 362 (366)
||+ .+++.. .++.|.++|+.+.+
T Consensus 324 ---Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 324 ---DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ---SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ---CCCEEEEEccCCCCeEEEEECCCCc
Confidence 886 566666 59999999998754
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.45 E-value=6.2e-11 Score=109.85 Aligned_cols=285 Identities=12% Similarity=0.111 Sum_probs=173.8
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecC-Cce-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTP-AKL-SSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
+..|++++.++.|..+|..+++...... ..... ....... ..+ ..+... +..++.++.|+.|..+|..++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~---~~~~~-~~~~~~~~~~~~~~~~~~----~g~v~v~~~dg~l~AlDa~TG 141 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYD---PQSDR-HRAGEACCDAVNRGVAVW----KGKVYVGVLDGRLEAIDAKTG 141 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEEC---CCCCG-GGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEc---CCCCc-cccccccccCCCCccEEE----CCEEEEEccCCEEEEEECCCC
Confidence 4566677778899999998887655221 11100 0000000 000 112222 557888888999999999999
Q ss_pred ceeEeeecC-CCCceeeEEecc--CCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCC-C------------
Q 017773 132 VPIFERDEH-GGRRVWSVDYSK--GDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSAS-R------------ 189 (366)
Q Consensus 132 ~~~~~~~~~-~~~~v~~i~~~~--~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~-~------------ 189 (366)
+.+..+... .......+...| .+..+ +.+. .+|.|+.||.+ +++.+..+..... .
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~sP~v~~g~v-~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITGAPRVVNGKV-VIGNGGAEFGVRGYVTAYDAE--TGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred CEeeeecCcCCCCCCccccCCcEEECCEE-EEEeCCCccCCCCEEEEEECC--CCcEEEEecccCCCccccccccccccc
Confidence 988776653 110111122222 13344 3433 36899999999 7888776653110 0
Q ss_pred ----------------CCeEEEEEcCCCCcEEEEEecCC-------------------eEEEEecCCCCCCeeEeec--c
Q 017773 190 ----------------SAVCCVEFHPFGSSLVAAGCADK-------------------KAYAYDVRKMVDPVLVFDG--H 232 (366)
Q Consensus 190 ----------------~~i~~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~--~ 232 (366)
.....++++|++ .+++.+..++ .|..+|.+++ +.+-.+.. |
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~ 296 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPG 296 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred ccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCc
Confidence 011257888877 6788887776 3999999998 55544432 2
Q ss_pred c-------CcEEEEEEc-CCC---EEEEEeCCCcEEEEecCCCceeeeeecccc------------ee------------
Q 017773 233 R-------KTVTYIRFL-DVD---TLVTAGTDGCLKLWNVNDSRVIRTYKGHVN------------NR------------ 277 (366)
Q Consensus 233 ~-------~~v~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------~~------------ 277 (366)
. .+....... +++ .++.++.+|.++++|.++++++........ ++
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 122222222 454 788999999999999999988744321110 00
Q ss_pred -------------eeEEEEEecCCCeEEEecC---------------------------------------------CCe
Q 017773 278 -------------NFVGLSVWRHGGLLGCGSE---------------------------------------------TNQ 299 (366)
Q Consensus 278 -------------~~~~~~~~~~~~~l~~~~~---------------------------------------------dg~ 299 (366)
..-.++++|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0001334487777776421 478
Q ss_pred EEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 300 VFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 300 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
|..||+.+++.++.+... .++..-.+.. .+.+++.++.||.|+.||.+++++
T Consensus 457 l~A~D~~tG~~~W~~~~~---------~~~~~g~~~t---agglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYV---------TIFNGGTLST---AGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEETTTTEEEEEEEES---------SSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEECCCCCeEeEccCC---------CCccCccceE---CCCEEEEECCCCcEEEEECCCCcc
Confidence 999999999999887542 2233334555 555888899999999999987653
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=1.4e-10 Score=96.90 Aligned_cols=224 Identities=8% Similarity=-0.037 Sum_probs=143.0
Q ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
........|+|+|+ +++++..++.|..|+.. +.. ..+.. +...+..++++++ |+++++...+
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----~~~~~----------~~~~~~gl~~d~d--G~l~v~~~~~ 106 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----DVLLD----------ATAFTNGNAVDAQ--QRLVHCEHGR 106 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----EEEEE----------SCSCEEEEEECTT--SCEEEEETTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----EEEeC----------CCCccceeeECCC--CCEEEEECCC
Confidence 44567899999998 66777778899999863 221 11111 2345889999998 8877776666
Q ss_pred CcEEEEeCCCCceeEeeec---CCCCceeeEEeccCCCceEEE----ecC-------------CCcEEEeeCCCCCCcee
Q 017773 121 GVVMEYDLEKKVPIFERDE---HGGRRVWSVDYSKGDPVLGAS----GSD-------------DGTMQMWDPRCDGGKCV 180 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~----~~~-------------dg~v~~~d~~~~~~~~~ 180 (366)
+.|.+|+.+ ++....... .....+.++++.++|..+ ++ |.. .+.|..+|.. +++..
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~--~g~~~ 182 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPD--GSPLQ 182 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSS--SCCCE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCC--CCcEE
Confidence 889999986 543222111 111246789999998865 65 332 2567777775 34433
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEecC------CeEEEEecCCCCCCe--eEe-ecccCcEEEEEEc-CCCEEEEE
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCAD------KKAYAYDVRKMVDPV--LVF-DGHRKTVTYIRFL-DVDTLVTA 250 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~-~~~~~~v~~~~~~-~~~~l~~~ 250 (366)
... .......++|+|++ +.|+.+... +.|++||+.... .. ..+ .........+++. +++ |.++
T Consensus 183 ~~~----~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~ 255 (305)
T 3dr2_A 183 RMA----DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSS 255 (305)
T ss_dssp EEE----EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEEC
T ss_pred EEe----cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEe
Confidence 322 11267889999998 555555444 789999987642 11 111 1122334567887 777 4444
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCC
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN 298 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 298 (366)
..+ .|.+|+. +++.+..+..+. .+..++|. ++++.|..++.++
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~--~d~~~L~it~~~~ 298 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFD--QAQQRLFITGGPC 298 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEECSS-CCCEEEEC--TTSCEEEEEETTE
T ss_pred cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEe--CCCCEEEEEcCCe
Confidence 444 4999997 577777776554 35566666 8988888777654
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.42 E-value=8.1e-10 Score=95.16 Aligned_cols=275 Identities=15% Similarity=0.121 Sum_probs=165.8
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+..+++++.++.|..+|..+++...... ...... ........+.+... .+ +..++.++.++.|..+|..+++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~---~~~~~~-~~~~~~~~~~~~~~-~~--~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVS---LAEKDG-WFSKEPALLSGGVT-VS--GGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE---CCC----CCSCCCCCEEEEEE-EE--TTEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeec---Cccccc-cccccCcccccCce-Ee--CCEEEEEcCCCEEEEEECCCCCE
Confidence 5577777888999999998876544211 110000 00000112222111 12 55777788899999999999988
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC---CeEEEEEcCCCCcEEEEEec
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS---AVCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~ 210 (366)
......... ........ +..+ +.++.++.|..+|.. +++.+.......... ........ + ..+++++.
T Consensus 126 ~W~~~~~~~-~~~~p~~~--~~~v-~v~~~~g~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~-~--~~v~~g~~ 196 (376)
T 3q7m_A 126 AWQTKVAGE-ALSRPVVS--DGLV-LIHTSNGQLQALNEA--DGAVKWTVNLDMPSLSLRGESAPTTA-F--GAAVVGGD 196 (376)
T ss_dssp EEEEECSSC-CCSCCEEE--TTEE-EEECTTSEEEEEETT--TCCEEEEEECCC-----CCCCCCEEE-T--TEEEECCT
T ss_pred EEEEeCCCc-eEcCCEEE--CCEE-EEEcCCCeEEEEECC--CCcEEEEEeCCCCceeecCCCCcEEE-C--CEEEEEcC
Confidence 776655432 11122222 3445 778889999999998 788777765432110 00111222 2 36777888
Q ss_pred CCeEEEEecCCCCCCeeEeecccCc----------EEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKT----------VTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
++.+..+|.+++ +.+......... +.......+..++.++.++.+..+|.++++.+...... ....
T Consensus 197 ~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~- 272 (376)
T 3q7m_A 197 NGRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVND- 272 (376)
T ss_dssp TTEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEE-
T ss_pred CCEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCC-
Confidence 999999999887 444433321100 00000113567788888999999999999887665532 1222
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.. .++..++.++.++.|..+|..+++.++..... ....+...... + ..|+.++.+|.|+++|.++
T Consensus 273 -~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~~~~~~~----~-~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 273 -FI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-------LHRLLTSPVLY----N-GNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp -EE--EETTEEEEEETTCCEEEEETTTCCEEEEECTT-------TTSCCCCCEEE----T-TEEEEECTTSEEEEEETTT
T ss_pred -ce--EECCEEEEEcCCCeEEEEECCCCcEEEeeccc-------CCCcccCCEEE----C-CEEEEEeCCCeEEEEECCC
Confidence 22 34667777888999999999999988776411 11122223332 2 3677888899999999877
Q ss_pred cCC
Q 017773 361 KPL 363 (366)
Q Consensus 361 ~~l 363 (366)
+++
T Consensus 338 G~~ 340 (376)
T 3q7m_A 338 GRF 340 (376)
T ss_dssp CCE
T ss_pred CcE
Confidence 543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.40 E-value=2.2e-10 Score=105.94 Aligned_cols=286 Identities=10% Similarity=0.085 Sum_probs=176.7
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+..|++++.++.|.-+|..+++............. .....++ .....+++. +..++.++.|+.|..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~-~~~~~~~-~~~~~~a~~----~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRST-GFKGCCD-VVNRGVALW----KGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGG-GGGSSSC-SCCCCCEEE----TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc-ccccccc-CCCCCceEE----CCEEEEEcCCCEEEEEECCCCCE
Confidence 44566666788899999888776542211100000 0000000 001123332 56788888899999999999998
Q ss_pred eEeeecC-CC---CceeeEEeccCCCceEEEecC------CCcEEEeeCCCCCCceeEeecCCCCC--------------
Q 017773 134 IFERDEH-GG---RRVWSVDYSKGDPVLGASGSD------DGTMQMWDPRCDGGKCVSTVQPSASR-------------- 189 (366)
Q Consensus 134 ~~~~~~~-~~---~~v~~i~~~~~~~~l~~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~~~-------------- 189 (366)
+..+... .. ..+.+--.. .+..+ +.++. ++.|+.+|.. +++.+..+......
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v-~~~~v-~v~~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV-FKGKV-IIGNGGAEYGVRGYITAYDAE--TGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE-ETTEE-EECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EeeecCCcCcCcCcccccCcEE-ECCEE-EEEecccccCCCCEEEEEECC--CCcEEEEeccCCCCcccccccccccccc
Confidence 8887654 21 012111111 13444 44432 6899999998 78888776543211
Q ss_pred ----------------CCeEEEEEcCCCCcEEEEEecCC-------------------eEEEEecCCCCCCeeEeec--c
Q 017773 190 ----------------SAVCCVEFHPFGSSLVAAGCADK-------------------KAYAYDVRKMVDPVLVFDG--H 232 (366)
Q Consensus 190 ----------------~~i~~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~--~ 232 (366)
.....++++|++ .+++.+..++ .|..+|.+++ +.+-.+.. |
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~~ 304 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETPG 304 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTT
T ss_pred ccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCCC
Confidence 011357888887 6777776554 5999999988 45444432 2
Q ss_pred c-------CcEEEEEEc-CC---CEEEEEeCCCcEEEEecCCCceeeeeecccce-----------ee------------
Q 017773 233 R-------KTVTYIRFL-DV---DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNN-----------RN------------ 278 (366)
Q Consensus 233 ~-------~~v~~~~~~-~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~------------ 278 (366)
. .....+... ++ ..++.++.+|.+.++|.++++++..+.....+ +.
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 1 112222333 56 67899999999999999999988766522100 00
Q ss_pred ----------eEEEEEecCCCeEEEecC-------------------------------------------CCeEEEEEe
Q 017773 279 ----------FVGLSVWRHGGLLGCGSE-------------------------------------------TNQVFVYDV 305 (366)
Q Consensus 279 ----------~~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iwd~ 305 (366)
.-.++++|+..++++... .|.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 002344588888876432 278999999
Q ss_pred ecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 306 RWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.+++.++.+... .++.+..+.+ ++..++.++.||.+++||.+++++
T Consensus 465 ~tG~~~W~~~~~---------~~~~~g~~~~---~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 465 VAQKAAWSVEHV---------SPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp TTTEEEEEEEES---------SSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCcEEeecCCC---------CCCcCcceEe---CCCEEEEECCCCcEEEEECCCCce
Confidence 999999887532 2344445555 556888899999999999987653
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=5.6e-10 Score=103.44 Aligned_cols=264 Identities=17% Similarity=0.150 Sum_probs=161.8
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-----CCCcEEEEeC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD-----YDGVVMEYDL 128 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 128 (366)
+..|++++.|+.|..+|..+++............. .......++ .. + +..++..+ .+|.|..||.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~---~~~~~~sP~----v~-~--g~v~vg~~~~~~~~~g~v~a~D~ 190 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR---SYTITGAPR----VV-N--GKVVIGNGGAEFGVRGYVTAYDA 190 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS---CCBCCSCCE----EE-T--TEEEECCBCTTTCCBCEEEEEET
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC---CccccCCcE----EE-C--CEEEEEeCCCccCCCCEEEEEEC
Confidence 45788888899999999998876552221100000 000001111 11 2 44443322 3689999999
Q ss_pred CCCceeEeeecCCC------------------------------CceeeEEeccCCCceEEEecCCC-------------
Q 017773 129 EKKVPIFERDEHGG------------------------------RRVWSVDYSKGDPVLGASGSDDG------------- 165 (366)
Q Consensus 129 ~~~~~~~~~~~~~~------------------------------~~v~~i~~~~~~~~l~~~~~~dg------------- 165 (366)
.+++.+..+..... .....+++.|++..+ +.+..++
T Consensus 191 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~v-y~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 191 ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLL-YIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHHTTCS
T ss_pred CCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEE-EEeCCCCCccccCCCCCCCC
Confidence 99998776652110 011256788877766 7777665
Q ss_pred ------cEEEeeCCCCCCceeEeecCCCCC-------CCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCCCCCeeEee
Q 017773 166 ------TMQMWDPRCDGGKCVSTVQPSASR-------SAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKMVDPVLVFD 230 (366)
Q Consensus 166 ------~v~~~d~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 230 (366)
.|..+|.+ +++.+..++...+. .++.......+|. ..++.++.+|.++++|.+++ +++....
T Consensus 270 d~~y~~~v~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~ 346 (689)
T 1yiq_A 270 DNLFLSSIVAVNAD--TGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKG 346 (689)
T ss_dssp CCTTTTEEEEEETT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEE
T ss_pred CceeeeeEEEEEcc--CCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEecccc
Confidence 39999999 88888877654331 1222222222441 37888999999999999988 4442211
Q ss_pred ccc-Cc--------------------------------------EEEEEEc-CCCEEEEEeC------------------
Q 017773 231 GHR-KT--------------------------------------VTYIRFL-DVDTLVTAGT------------------ 252 (366)
Q Consensus 231 ~~~-~~--------------------------------------v~~~~~~-~~~~l~~~~~------------------ 252 (366)
... .. -..++++ +..++++...
T Consensus 347 ~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~ 426 (689)
T 1yiq_A 347 IVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPF 426 (689)
T ss_dssp SSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSC
T ss_pred ccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccc
Confidence 000 00 0114555 4455555421
Q ss_pred ---------------------------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEe
Q 017773 253 ---------------------------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDV 305 (366)
Q Consensus 253 ---------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 305 (366)
+|.|+.||+.+++.+-++..+.. .....+. ..+.+++.|+.||.|+.||.
T Consensus 427 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~--tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 427 KSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLS--TAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp TTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEE--ETTTEEEEECTTSEEEEEET
T ss_pred ccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccce--ECCCEEEEECCCCcEEEEEC
Confidence 37899999999999888775542 2223344 67889999999999999999
Q ss_pred ecCceEEEEecccccccCCCCceeeEEEeeccCCCceEE
Q 017773 306 RWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTL 344 (366)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 344 (366)
++|+.++.++.+. ...-.-+.|.. +|+..
T Consensus 504 ~tG~~lw~~~~~~-------~~~~~p~ty~~---~G~qy 532 (689)
T 1yiq_A 504 DTGEKLWEQPAAS-------GVMAAPVTYSV---DGEQY 532 (689)
T ss_dssp TTCCEEEEEECSS-------CCCSCCEEEEE---TTEEE
T ss_pred CCCccceeeeCCC-------CcccCceEEEE---CCEEE
Confidence 9999999887542 22223466666 66544
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.38 E-value=4e-11 Score=101.75 Aligned_cols=267 Identities=12% Similarity=0.015 Sum_probs=165.0
Q ss_pred eeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee----------cCCeEEEEEceecccccceeeeecCce
Q 017773 19 ARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG----------IARKIRIYNIKSVLVDHPVVAVVDHSK 88 (366)
Q Consensus 19 ~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 88 (366)
.+...|.++.+++.....+ ..+ .+.++||+++++++. .++.|.+||..+.+....+.. .+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-PDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-TTSCS
T ss_pred eEEEEECCCCeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-CCccc
Confidence 5556778887777655443 334 799999999888886 368899999998776552221 10000
Q ss_pred eceeeeecCCceeEEEEecCCCCcEEEEEcC--CCcEEE--EeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC
Q 017773 89 VCDYYICTPAKLSSLKWKPGTSGRVLGSGDY--DGVVME--YDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD 164 (366)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 164 (366)
... ......++++|+ |++++++.. +..|.+ +|+.+ +..+.... . ..+.|+++..+++.+.|
T Consensus 120 ---~~~--g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~---~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 120 ---FSV--GPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C---FHIHPGAAATHYLGSCP 184 (368)
T ss_dssp ---CCB--SCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C---CCCEEEETTEEECCCCT
T ss_pred ---ccc--CCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c---eEEccCCCeEEEEEcCC
Confidence 000 012457999999 998888864 467888 88877 44443321 1 23456676666777889
Q ss_pred CcEEEeeCCCC---CCceeEee--cCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-CeeEeec-------
Q 017773 165 GTMQMWDPRCD---GGKCVSTV--QPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDG------- 231 (366)
Q Consensus 165 g~v~~~d~~~~---~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~------- 231 (366)
|.+.+.|+... .++..... ...-...+. . .++++.++++. . +.+.+.|+..... .+..+..
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 99998888720 02221100 011112233 3 55553444444 5 9999999865311 1111110
Q ss_pred ---ccCcEEEEEEc-CCCEEEEEeC---------CCcEEEEecCCCceeeeeecccceeeeEEEEEecCCC-eEEEec-C
Q 017773 232 ---HRKTVTYIRFL-DVDTLVTAGT---------DGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGG-LLGCGS-E 296 (366)
Q Consensus 232 ---~~~~v~~~~~~-~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ 296 (366)
.......++++ +++.++.+.. ++.+.++|+.+.+.+.++.... ....++++ |||+ ++++.. .
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s--~Dg~~l~va~~~~ 335 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA--QDGASDNYANSAG 335 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC--CSSSCEEEEEETT
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC--CCCCEEEEEccCC
Confidence 01111225788 7777776533 2356699999999999887654 34455655 9998 455555 5
Q ss_pred CCeEEEEEeecCceEEEEec
Q 017773 297 TNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 297 dg~i~iwd~~~~~~~~~~~~ 316 (366)
++.|.++|+.+++.+..+..
T Consensus 336 ~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 336 TEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp TTEEEEEESSSCEEEEECCC
T ss_pred CCeEEEEECCCCcEEEEEEC
Confidence 89999999999999887753
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=2e-08 Score=81.94 Aligned_cols=255 Identities=9% Similarity=-0.021 Sum_probs=153.2
Q ss_pred CCEEEEeecCCeEEEEEceecccccc-eeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHP-VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 132 (366)
|++|+.+.. +.|+.++++....... ...... .....+..++|+++ .+.++++-..++.|..++++...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~gi~~d~~-~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH---------IPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE---------EEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeec---------CCCCcEEEEEEecC-CCEEEEEECCCCEEEEEecCCCC
Confidence 345666553 4788888765432110 000000 00124789999986 14555566667899999997665
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec--
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-- 210 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 210 (366)
.......... ....+++.+++..++++-...+.|.++++. .......... .......++++|+++.++++...
T Consensus 70 ~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 70 PTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDRIEVAKMD--GTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp CEEEECTTCC-CEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCSS
T ss_pred cEEEEECCCC-CccEEEEEecCCeEEEEECCCCEEEEEEcC--CCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCCC
Confidence 4333332223 678999999877776777778899999987 2222222221 12367899999975455555433
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCC
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (366)
.+.|..+++... .........-.....++++ ++..| ++-...+.|.++|.........+.....+ .. +++. .+
T Consensus 145 ~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-~g--i~~d-~~ 219 (267)
T 1npe_A 145 NPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FA--VTSY-GK 219 (267)
T ss_dssp SCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EE--EEEE-TT
T ss_pred CcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-eE--EEEe-CC
Confidence 478988888654 2222222223457889998 56555 55556678999998755433333322222 23 3322 34
Q ss_pred CeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeec
Q 017773 289 GLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRR 336 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 336 (366)
.++++...++.|..+|..+++.+..+... ......++++.|
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g-------~~~~p~gi~~~~ 260 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISKEMDTFHPH-------KQTRLYGITIAL 260 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECCS-------SCCCCCCEEEEC
T ss_pred EEEEEECCCCeEEEEeCCCCCceEEEccc-------cccccceeeecC
Confidence 45555556789999999989887776421 122467788887
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.36 E-value=5e-10 Score=94.53 Aligned_cols=290 Identities=12% Similarity=0.068 Sum_probs=173.3
Q ss_pred ccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceee
Q 017773 14 TTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYY 93 (366)
Q Consensus 14 ~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 93 (366)
...+..++.|+ .++.+..... .+...+.++...++|. |..++.+ |..+|. +++...... ...
T Consensus 36 ~t~~~~l~~~d-~~g~~~~~~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~---~~~------ 97 (330)
T 3hxj_A 36 GSSNKNLYAIN-TDGSVKWFFK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD---TKK------ 97 (330)
T ss_dssp SSTTTTTEEEC-TTSCEEESSC----GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC---C--------
T ss_pred EcCCCEEEEEC-CCCcEEEEEe----cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE---CCC------
Confidence 33444566666 4444433322 1244567777877775 4445444 777875 433322111 000
Q ss_pred eecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 94 ICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
......... + + .+..++.++.|..+|.. ++.......... .+.++...+++. + ..++.++.|..+|..
T Consensus 98 ----~~~~~~~~~-~--~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l-~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 98 ----AIVSDFTIF-E--D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-I-YVGSNDNYLYAINPD 165 (330)
T ss_dssp -------CCEEEE-T--T-EEEEECTTSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-E-EEECTTSEEEEECTT
T ss_pred ----CcccCceEE-C--C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-E-EEEcCCCEEEEECCC
Confidence 011222222 3 3 56677778999999998 776666655443 566677766665 4 567778999999976
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCC
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTD 253 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 253 (366)
++....+... ...+.++...+++ .+ ..++ +.++.+| .++ +...........+.++.......+..++.+
T Consensus 166 ---g~~~~~~~~~--~~~~~~~~~d~~g-~l-~v~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ 234 (330)
T 3hxj_A 166 ---GTEKWRFKTN--DAITSAASIGKDG-TI-YFGS--DKVYAIN-PDG-TEKWNFYAGYWTVTRPAISEDGTIYVTSLD 234 (330)
T ss_dssp ---SCEEEEEECS--SCCCSCCEECTTC-CE-EEES--SSEEEEC-TTS-CEEEEECCSSCCCSCCEECTTSCEEEEETT
T ss_pred ---CCEeEEEecC--CCceeeeEEcCCC-EE-EEEe--CEEEEEC-CCC-cEEEEEccCCcceeceEECCCCeEEEEcCC
Confidence 4555555432 2356777787777 44 4444 8899999 554 444455444456777777633356667778
Q ss_pred CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEE
Q 017773 254 GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVC 333 (366)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 333 (366)
+.|..+| .+++.+..+.........+.+. +++ .|..++.+|.|..+|. +++....+..+ ...+.++.
T Consensus 235 ~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~--~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--------~~~~~~~~ 301 (330)
T 3hxj_A 235 GHLYAIN-PDGTEKWRFKTGKRIESSPVIG--NTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--------SWIIATPV 301 (330)
T ss_dssp TEEEEEC-TTSCEEEEEECSSCCCSCCEEC--TTS-CEEEECTTCEEEEECT-TSCEEEEEECS--------SCCCSCCE
T ss_pred CeEEEEC-CCCCEeEEeeCCCCccccceEc--CCC-eEEEecCCCCEEEECC-CCcEEEEEEcC--------CccccceE
Confidence 8888887 4566666665443333333332 444 5667777888999995 67777665432 34566676
Q ss_pred eeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 334 WRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
..+ +|. |..++.+|.+++...+..
T Consensus 302 ~d~---~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 302 IDE---NGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECT---TCC-EEEECTTSCEEEEEC---
T ss_pred EcC---CCE-EEEEcCCCeEEEEecccc
Confidence 665 654 566889999998876653
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=111.84 Aligned_cols=187 Identities=10% Similarity=0.072 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
+..+++++.||.|..||..+++.+..+.. + ++.+..+..++..+ ++++.||.|+.||.. +++.+........ .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~-~~~s~p~~~~g~~~-v~~s~dg~l~a~d~~--tG~~~w~~~~~~~-~ 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--D-PVLQVPTHVEEPAF-LPDPNDGSLYTLGSK--NNEGLTKLPFTIP-E 81 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--C-CSCCCC-----CCE-EECTTTCCEEEC-------CCSEECSCCHH-H
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--C-CceecceEcCCCEE-EEeCCCCEEEEEECC--CCceeeeeeccCc-c
Confidence 77899999999999999999998888776 3 56666666666555 777899999999998 6666555542210 0
Q ss_pred CeE-EEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceee
Q 017773 191 AVC-CVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIR 268 (366)
Q Consensus 191 ~i~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 268 (366)
.+. +..+. .+ ..+++|+.++.++.||.+++ +.+..+..+.. ..++ ++..+++++.|+.|+.||.++++.+.
T Consensus 82 ~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 82 LVQASPCRS-SD-GILYMGKKQDIWYVIDLLTG-EKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccCceEe-cC-CEEEEEeCCCEEEEEECCCC-cEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 010 00111 23 46778889999999999988 45555544331 2233 67788889999999999999998877
Q ss_pred eeecccceeeeEEEEEecCC---CeEEEecCCCeEEEEEeecCceEEEEe
Q 017773 269 TYKGHVNNRNFVGLSVWRHG---GLLGCGSETNQVFVYDVRWGEPVWVHD 315 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 315 (366)
++..+. .....+. ++. ..+++++.||.|+.||..+|+.++...
T Consensus 155 ~~~~~~--~~~~~~~--~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFD--YAASLPE--DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEE--ECCBCCC--CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEeccc--ccCcccc--CCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 765332 1122222 322 567778889999999999999988775
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=2.7e-12 Score=110.12 Aligned_cols=258 Identities=12% Similarity=0.018 Sum_probs=140.0
Q ss_pred CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc
Q 017773 53 SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 53 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 132 (366)
++..+++++.||.|+.||..+++..... .. . ++.+..+..+ +..+++++.||.|+.||.++++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~---~~-~-----------~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL---KE-D-----------PVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE---EC-C-----------CSCCCC-------CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe---cC-C-----------CceecceEcC--CCEEEEeCCCCEEEEEECCCCc
Confidence 4678999999999999999988765522 11 1 2333444455 7788888899999999999888
Q ss_pred eeEeeecCCCCceee-EEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC
Q 017773 133 PIFERDEHGGRRVWS-VDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 211 (366)
.+.....+....+.+ ..+. .+..+ ++++.++.++.||.. +++.+..+.... ...++|++ ..+++++.+
T Consensus 71 ~~w~~~~~~~~~~~~sp~~~-~~~~v-~~g~~dg~v~a~D~~--tG~~~w~~~~~~------~~~~~p~~-~~v~~~~~d 139 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCRS-SDGIL-YMGKKQDIWYVIDLL--TGEKQQTLSSAF------ADSLSPST-SLLYLGRTE 139 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC------C-CCCEEEEEEEEECCC-------------------------------EEEEEEE
T ss_pred eeeeeeccCccccccCceEe-cCCEE-EEEeCCCEEEEEECC--CCcEEEEecCCC------cccccccC-CEEEEEecC
Confidence 766554332111111 1111 24445 778889999999998 787777665322 23456666 688888899
Q ss_pred CeEEEEecCCCCCCeeEeecccCcEEEEEEcC----CCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecC
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLD----VDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRH 287 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
+.|+.||.+++ +.+..+..+. .....+.. +..+++++.||.|..||.++++.+.++.... ++.. .+..+++
T Consensus 140 g~v~a~d~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-pv~~-~~~~~~d 214 (369)
T 2hz6_A 140 YTITMYDTKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS-PVVA-FYVWQRE 214 (369)
T ss_dssp EEEECCCSSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS-CEEE-EEECTTS
T ss_pred CEEEEEECCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC-ceEE-EEEecCC
Confidence 99999999987 4444433211 11222222 1567788899999999999999887776433 3221 2233345
Q ss_pred CCeE----EEecCCCeEEEEEeecCc----eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 288 GGLL----GCGSETNQVFVYDVRWGE----PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 288 ~~~l----~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
+... +.+ ++.++.+|..+|+ .++.+... +.+. +|.- .+..|+.++.||.|+.++..
T Consensus 215 g~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~---------~~~~----sp~~-~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 215 GLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP---------KETE----AKSK-LTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp SCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC---------CHHH----HHHH-SEEEECBEECSSCEECCEEE
T ss_pred ceEeccceeec--ccceeeeehhcCCcccceeeeeccC---------cccc----cccc-ccceEEEecccCCEEecCcc
Confidence 5432 112 3456677777776 55544321 1111 2322 23467777888888888775
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=2.5e-09 Score=98.88 Aligned_cols=286 Identities=13% Similarity=0.122 Sum_probs=169.9
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCce-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKL-SSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV 132 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 132 (366)
+..|++++.++.|.-+|..+++...... ...............+ ..+++. +..++.++.|+.|..+|..+++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYD---PEVAKVKARTSCCDAVNRGVALW----GDKVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEEC---CCCCGGGGGGCTTCSCCCCCEEE----BTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEEC---CCCCccccccccccCCccceEEE----CCEEEEEcCCCEEEEEECCCCC
Confidence 4466666778899999988877654221 1110000000000000 112232 4577888889999999999999
Q ss_pred eeEeeecCCCCceeeEEecc--CCCceEEEecC------CCcEEEeeCCCCCCceeEeecCCC-CC--------------
Q 017773 133 PIFERDEHGGRRVWSVDYSK--GDPVLGASGSD------DGTMQMWDPRCDGGKCVSTVQPSA-SR-------------- 189 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~-~~-------------- 189 (366)
.+..+..........+...| .+..+ +.+.. +|.|..+|.+ +++.+..+.... ..
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v-~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRVVKGKV-IIGNGGAEYGVRGFVSAYDAD--TGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred EeeeeccCCCCCcceecCCCEEECCEE-EEeCCCCCcCCCCEEEEEECC--CCcEEEEecccCCCCCccccccccccccc
Confidence 88777653210111111111 13344 44432 5899999998 788887775321 10
Q ss_pred --------------CCeEEEEEcCCCCcEEEEEecCC-------------------eEEEEecCCCCCCeeEeec--cc-
Q 017773 190 --------------SAVCCVEFHPFGSSLVAAGCADK-------------------KAYAYDVRKMVDPVLVFDG--HR- 233 (366)
Q Consensus 190 --------------~~i~~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~--~~- 233 (366)
.....++++|.. .+++.++.++ .|..+|.+++ +.+-.+.. |.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~~ 293 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDS 293 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCC
T ss_pred cCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCcc
Confidence 011246888876 5777777665 4999999988 45544432 22
Q ss_pred ------CcEEEEEEc-CCC---EEEEEeCCCcEEEEecCCCceeeeeecccc------------eee-------------
Q 017773 234 ------KTVTYIRFL-DVD---TLVTAGTDGCLKLWNVNDSRVIRTYKGHVN------------NRN------------- 278 (366)
Q Consensus 234 ------~~v~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------~~~------------- 278 (366)
.+.....+. +++ .++.++.+|.+.++|..+++++...+.... ++.
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 233323333 554 688999999999999999988754432110 000
Q ss_pred ---------eEEEEEecCCCeEEE------------------------------------ecCCCeEEEEEeecCceEEE
Q 017773 279 ---------FVGLSVWRHGGLLGC------------------------------------GSETNQVFVYDVRWGEPVWV 313 (366)
Q Consensus 279 ---------~~~~~~~~~~~~l~~------------------------------------~~~dg~i~iwd~~~~~~~~~ 313 (366)
.-.++++|+..+++. ...+|.|..||+.+++.++.
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~ 453 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK 453 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEE
Confidence 000233466555543 11348899999999999988
Q ss_pred EecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 314 HDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.... .......+.. .+.+++.++.||.|+.||.+++++
T Consensus 454 ~~~~---------~~~~~~~~~t---~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 454 VPYP---------THWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEES---------SSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCC---------CCCcCceeEe---CCCEEEEECCcccchhhhhhcChh
Confidence 7542 2223333444 455888889999999999987653
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=1.1e-08 Score=87.54 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=136.3
Q ss_pred Eec--cCCCceEEEecCCCcEEEeeCCCCCC--ceeEeecC-----CCCCCCeEEEEEcCCCCcEEEEEecC------Ce
Q 017773 149 DYS--KGDPVLGASGSDDGTMQMWDPRCDGG--KCVSTVQP-----SASRSAVCCVEFHPFGSSLVAAGCAD------KK 213 (366)
Q Consensus 149 ~~~--~~~~~l~~~~~~dg~v~~~d~~~~~~--~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d------~~ 213 (366)
.++ ++.+++++.+-.++.|.++|+.+... +..+.++. .........+...|+| +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 78899989999999999999973222 44444420 0011245677889998 55555444 78
Q ss_pred EEEEecCCCCCCeeEeecccC---cEEEEEEc-CCCEEEEEe-------------------CCCcEEEEecCCCceeeee
Q 017773 214 AYAYDVRKMVDPVLVFDGHRK---TVTYIRFL-DVDTLVTAG-------------------TDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~-~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~ 270 (366)
|.++|.++. +.+.++..... .-+.+.|+ +++.++++. .+.+|.+||+.+++.+.++
T Consensus 166 v~vlD~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 166 ILMLDHYSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEEECTTTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 999999987 56666653222 23457778 888888874 3689999999999888888
Q ss_pred ecc-c-ceeeeEEEEEecCCCeEEEec------CCCeEEEEEeecCceE--EEEecccccccC----------CCCceee
Q 017773 271 KGH-V-NNRNFVGLSVWRHGGLLGCGS------ETNQVFVYDVRWGEPV--WVHDFEPVTAAG----------SERGFVS 330 (366)
Q Consensus 271 ~~~-~-~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~~~~~----------~~~~~v~ 330 (366)
... . ....-+.+.++|++++++++. .+++|.+|..+.++.. ..+.++...... +-.....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 753 1 223345565679999988776 5678988887765322 122112110000 0024578
Q ss_pred EEEeeccCCCceEEEEeCC-CCcEEEEEec
Q 017773 331 SVCWRRVGEDECTLVAGGS-DGLLHVFVGK 359 (366)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~ 359 (366)
.+.++| ||++|..+.. .+.|.+|++.
T Consensus 325 ~I~lS~---DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 325 DIDISL---DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CEEECT---TSCEEEEEETTTTEEEEEECS
T ss_pred EEEECC---CCCEEEEEeCCCCEEEEEEec
Confidence 999999 8888876654 6899999985
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=3e-09 Score=94.16 Aligned_cols=290 Identities=13% Similarity=-0.003 Sum_probs=177.3
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCc-------eec-eee------------eec------CCce--eEEEE--
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHS-------KVC-DYY------------ICT------PAKL--SSLKW-- 105 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~-~~~------------~~~------~~~v--~~~~~-- 105 (366)
.+.+|+..|.++|+-+.+.+....+..+.... +.. ..+ ..+ .+.. ..+++
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 37788899999999988877655332221110 000 000 000 1112 33444
Q ss_pred -ecCCCCcEEEEEcC-CCcEEEEeCCCCceeEeeecCCCCceeeEEe-c-cCCCceEEEe-----------------cCC
Q 017773 106 -KPGTSGRVLGSGDY-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDY-S-KGDPVLGASG-----------------SDD 164 (366)
Q Consensus 106 -~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~l~~~~-----------------~~d 164 (366)
.++ |++++.... +..|.+.|+.+.+....+..........+++ . |+++++++++ -.+
T Consensus 97 g~~D--G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 97 GKYD--GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp TEEE--EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCcC--CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 235 777776554 5679999999999887555444336888887 4 8999985553 234
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--------------------------------
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK-------------------------------- 212 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-------------------------------- 212 (366)
+.+.+.|.. +.+...++...+ ....++++|+| +++++.+.+.
T Consensus 175 ~~vtvID~~--t~~v~~qI~Vgg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 175 NVFTAVDAD--KWEVAWQVLVSG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEEEEEETT--TTEEEEEEEESS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ceEEEEECC--CCeEEEEEEeCC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 579999998 788888877544 34567899998 5666655332
Q ss_pred ------eEEEEecCC--CCCCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecCCCc------------eeeee
Q 017773 213 ------KAYAYDVRK--MVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVNDSR------------VIRTY 270 (366)
Q Consensus 213 ------~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~------------~~~~~ 270 (366)
.|.+.|.++ ....+..+... ....++.++ +|+++++++ .+.+|.++|+.+.+ .+.++
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 366667666 31113344322 344678888 888766554 67899999998653 33344
Q ss_pred ecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec----------CceEEEEecccccccCCCCceeeEEEeeccCCC
Q 017773 271 KGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW----------GEPVWVHDFEPVTAAGSERGFVSSVCWRRVGED 340 (366)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 340 (366)
....++ .-++| +|+|...++...|++|.+||+.+ .+.+..+.... ..+|...-.++..+| |
T Consensus 328 ~vG~gP-~h~aF--~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y---qpGh~~~~~g~t~~~---D 398 (595)
T 1fwx_A 328 ELGLGP-LHTAF--DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY---QPGHLKTVMGETLDA---T 398 (595)
T ss_dssp BCCSCE-EEEEE--CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS---CEEEEEETTTTSTTC---C
T ss_pred CCCCCc-ceEEE--CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc---ccccceeccceEeCC---C
Confidence 332322 34444 49995556677899999999987 44555554321 113322223345566 8
Q ss_pred ceEEEEeCC---CCcE----------EEEEecccCC
Q 017773 341 ECTLVAGGS---DGLL----------HVFVGKKKPL 363 (366)
Q Consensus 341 ~~~l~s~~~---dg~i----------~iw~~~~~~l 363 (366)
|++|+++.. |+.+ .++|+.++++
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 989988743 4431 7788866543
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.23 E-value=8.7e-09 Score=82.76 Aligned_cols=196 Identities=8% Similarity=0.013 Sum_probs=137.1
Q ss_pred eeEEEEecCCCCcEEEEEcC--CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDY--DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
...+.|+|+ +.++++.+. ++.|.++|+.+++.+..+..........+++. ++.+.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~--t~ 96 (266)
T 2iwa_A 23 TQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR--TL 96 (266)
T ss_dssp EEEEEECST--TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT--TT
T ss_pred cccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC--CC
Confidence 578999997 766665543 68999999999998888764432133455554 56676777778999999998 78
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----CcEEEEEEcCCCEEEEEeC
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----KTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~ 252 (366)
+.+..+... .. . ...++++|..+++ +..++.|.++|..+. +....+.... ..++.+.|.++..++....
T Consensus 97 ~v~~~i~~g-~~-~--g~glt~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~ 170 (266)
T 2iwa_A 97 SNIKNFTHQ-MK-D--GWGLATDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQ 170 (266)
T ss_dssp EEEEEEECC-SS-S--CCEEEECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred cEEEEEECC-CC-C--eEEEEECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEECCEEEEecCC
Confidence 888888654 11 1 2335557745554 457889999999887 5555554321 2366788876655556557
Q ss_pred CCcEEEEecCCCceeeeeeccc-------------ceeeeEEEEEecCCC-eEEEecCCCeEEEEEeecCc
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHV-------------NNRNFVGLSVWRHGG-LLGCGSETNQVFVYDVRWGE 309 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 309 (366)
++.|.+.|..+++.+..+.... .....+++. |+++ +++++...+.|.+.++....
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~--~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD--QENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE--TTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc--CCCCEEEEECCCCCeEEEEEEeccc
Confidence 8899999999999998887421 122455555 8876 55667778899999987653
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.23 E-value=1.4e-08 Score=81.63 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=143.6
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecC--CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSD--DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 210 (366)
.+.++..........+.|++++ .|+++.+. ++.|.++|+. +++.+..+....+ .....+++. +..+.++.-.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~--tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQ--TGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETT--TCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETT
T ss_pred EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECC--CCCEEEEEecCCC-cceEEEEEe--CCEEEEEEec
Confidence 3444533332236789999875 55355443 6799999999 8888888765432 233355665 4356666667
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc--ce---eeeEEEEEe
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--NN---RNFVGLSVW 285 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~---~~~~~~~~~ 285 (366)
++.+.++|..+. +.+..+......-..++. +++.++.+..++.|.++|..+.+.+.++.... .+ .+.+.+.
T Consensus 85 ~~~v~viD~~t~-~v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTL-SNIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-- 160 (266)
T ss_dssp CSEEEEEETTTT-EEEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred CCEEEEEECCCC-cEEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--
Confidence 899999999987 566666432112233444 66666666678899999999998888876432 12 2334433
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEeccccc-----ccCCCCceeeEEEeeccCCCc-eEEEEeCCCCcEEEEEec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVT-----AAGSERGFVSSVCWRRVGEDE-CTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~ 359 (366)
++...+....++.|.+.|..+++.+..+.+.... .........++++|+| ++ ++++++...+.|.+-++.
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~---~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ---ENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET---TTTEEEEEETTCSEEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC---CCCEEEEECCCCCeEEEEEEe
Confidence 6766666667889999999999999888764210 0011124678999999 54 567777788989888886
Q ss_pred cc
Q 017773 360 KK 361 (366)
Q Consensus 360 ~~ 361 (366)
..
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=5e-10 Score=95.17 Aligned_cols=233 Identities=12% Similarity=0.078 Sum_probs=141.8
Q ss_pred ceeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCceeEeeec------CCCCceeeEEeccCCCceEEEecC-----CC
Q 017773 99 KLSSLKWKPGTSGRVLGSGD--YDGVVMEYDLEKKVPIFERDE------HGGRRVWSVDYSKGDPVLGASGSD-----DG 165 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~~-----dg 165 (366)
....++++|+ |+++++.. .++.++||.+.+++. ..+.. .....+..+++.++++.+ ++-.. ++
T Consensus 18 ~p~~va~~~~--g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~-v~D~g~~~~~~~ 93 (343)
T 2qe8_A 18 APGNITLTPD--GRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVW-MLDNGNQSKSVP 93 (343)
T ss_dssp CEEEEEECTT--SCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEE-EEECHHHHTSCC
T ss_pred CcceEEECCC--CCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEE-EEcCCCCcCCCC
Confidence 5789999998 99888864 234345555544432 22211 111378999999987644 44332 57
Q ss_pred cEEEeeCCCCCCceeEeecCC----CCCCCeEEEEEcCCCCcEEEEEe---cCCeEEEEecCCCCCCeeEeecccCcEE-
Q 017773 166 TMQMWDPRCDGGKCVSTVQPS----ASRSAVCCVEFHPFGSSLVAAGC---ADKKAYAYDVRKMVDPVLVFDGHRKTVT- 237 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~v~- 237 (366)
.|.+||+. +++.+..+... .+...+..++++|++..++++.. .++.|.+||+.++ +....+..|.....
T Consensus 94 ~i~~~d~~--tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 94 KLVAWDTL--NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPE 170 (343)
T ss_dssp EEEEEETT--TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCC
T ss_pred eEEEEECC--CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccc
Confidence 89999998 67766666542 12235789999986545666655 6789999999876 44454544322110
Q ss_pred EEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce----EE
Q 017773 238 YIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP----VW 312 (366)
Q Consensus 238 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~ 312 (366)
...+. ++..+.+.+.++.++.|.. .+..++++ |+++.|+.+..++. ++|.+..... +.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s--~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLD--AENEWLYLSPMHST-SMYRIKSADLSNLQLT 233 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCC--------------CEEEEEEC--TTSCEEEEEESSCS-EEEEEEHHHHTCTTCC
T ss_pred ccceeECCEEEEeccCCCceeceec--------------ccceeEec--cCCCEEEEEeCCCC-eEEEEEHHHhcCCCCC
Confidence 12333 6666666777777765531 22345655 99998888766553 4454432100 00
Q ss_pred EEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 313 VHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
..+........++.+....+++++ +|.++++...++.|.+|+.
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~---~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDK---DHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECT---TCCEEEEEGGGTEEEEEET
T ss_pred hhhhhcceEecccCCCCceEEECC---CCCEEEEccCCCeEEEEEC
Confidence 000000000012334567899999 8889999989999999998
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.20 E-value=1.4e-08 Score=80.64 Aligned_cols=201 Identities=12% Similarity=0.154 Sum_probs=133.6
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 210 (366)
.+.++......-...+.|+ ++ .|+.+.+.+| .|+.+|+. +++.+..+..... ..-..++.. +..+....-.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~--Tgkv~~~~~l~~~-~FgeGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIE--SGKTLQQIELGKR-YFGEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTT--TCCEEEEEECCTT-CCEEEEEEE--TTEEEEEESS
T ss_pred EEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECC--CCcEEEEEecCCc-cceeEEEEe--CCEEEEEEee
Confidence 3455543333345788888 44 5657777666 89999999 8888888876432 122334444 4456666667
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc--ceee---eEEEEEe
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--NNRN---FVGLSVW 285 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~---~~~~~~~ 285 (366)
++.+.+||..+. +.+.++...... ..++. +++.|+.+..++.|.++|..+.+.+.++.... .++. -+.+.
T Consensus 106 ~~~v~v~D~~t~-~~~~ti~~~~eG-~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-- 180 (262)
T 3nol_A 106 NGLGFVWNIRNL-RQVRSFNYDGEG-WGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-- 180 (262)
T ss_dssp SSEEEEEETTTC-CEEEEEECSSCC-CCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--
T ss_pred CCEEEEEECccC-cEEEEEECCCCc-eEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--
Confidence 899999999988 677777643222 34443 56666666667889999999998888876532 2322 24443
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEeccccccc----CCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA----GSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
+|+..+..-.++.|.+.|..+++.+..+.+...... ..-....++|||+| +++.|+..+.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp---~~~~lfVTGK 244 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK---EHHRLFVTGK 244 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET---TTTEEEEEET
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC---CCCEEEEECC
Confidence 777776666788999999999999999887543211 11234679999999 5545555543
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=6.9e-08 Score=82.63 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=142.1
Q ss_pred CCCCEEEE-eecCCeEEEEEceeccc-ccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC------CcE
Q 017773 52 PSDSVFAT-GGIARKIRIYNIKSVLV-DHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD------GVV 123 (366)
Q Consensus 52 ~~~~~l~t-~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i 123 (366)
+++++|+. +..++.|.++|+.+... ........... ... ......-..+...|+ | +++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-~~~--~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-VKK--VSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-HHH--HHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-ccc--ccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeE
Confidence 77776555 55678999999875422 11111111000 000 000012355677888 7 66666555 789
Q ss_pred EEEeCCCCceeEeeecCCCC--ceeeEEeccCCCceEEEec-------------------CCCcEEEeeCCCCCCceeEe
Q 017773 124 MEYDLEKKVPIFERDEHGGR--RVWSVDYSKGDPVLGASGS-------------------DDGTMQMWDPRCDGGKCVST 182 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~-------------------~dg~v~~~d~~~~~~~~~~~ 182 (366)
.++|.++.+.+.++...... --..+.|+|+++.+ ++.. .+.+|.+||+. +++.+.+
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m-vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~--~~k~~~t 243 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL-VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR--KRKRIHS 243 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE-EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT--TTEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEE-EEccCcCccccccccchhhhhhccCCEEEEEECC--CCcEeeE
Confidence 99999999988888644321 23458889998876 6653 36899999999 6777777
Q ss_pred ecCCCCCCCeEEEEE--cCCCCcEEEEEe-----cCCeEEEEecCCCC-CCeeE--eecc----------------cCcE
Q 017773 183 VQPSASRSAVCCVEF--HPFGSSLVAAGC-----ADKKAYAYDVRKMV-DPVLV--FDGH----------------RKTV 236 (366)
Q Consensus 183 ~~~~~~~~~i~~~~~--~~~~~~~l~~~~-----~d~~i~i~d~~~~~-~~~~~--~~~~----------------~~~v 236 (366)
+...........+.| +|++...++++. .+++|.+|..+.+. +..+. +... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 776422234556656 999844444444 56788776654320 00111 0000 1346
Q ss_pred EEEEEc-CCCEEEEEeC-CCcEEEEecCCC---ceeeeeecccc--------------eeeeEEEEEecCCCeEEEec
Q 017773 237 TYIRFL-DVDTLVTAGT-DGCLKLWNVNDS---RVIRTYKGHVN--------------NRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 237 ~~~~~~-~~~~l~~~~~-d~~i~iwd~~~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~ 295 (366)
..+.++ ++++|+++.. .+.|.+||+... +.+..+..... ....++++ |||++|+++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS--pDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS--RDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC--TTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc--CCCCEEEEEc
Confidence 788899 8888876654 679999998633 45555543200 13456666 9999999887
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.17 E-value=1.7e-08 Score=80.00 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=133.8
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
.+.++......-...+.|+ +..|+.+.+.+|.|+.+|+. +++.+..+ .... ..-..+++. +..++...-.++
T Consensus 45 Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~--Tgkv~~~~-l~~~-~FgeGit~~--g~~Ly~ltw~~~ 116 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLE--SAQPVWME-RLGN-IFAEGLASD--GERLYQLTWTEG 116 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSS--CSSCSEEE-ECTT-CCEEEEEEC--SSCEEEEESSSC
T ss_pred EEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECC--CCcEEeEE-CCCC-cceeEEEEe--CCEEEEEEccCC
Confidence 3445533333245688887 45676888889999999999 78877777 4331 122345554 445666666899
Q ss_pred eEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc--cee---eeEEEEEecC
Q 017773 213 KAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--NNR---NFVGLSVWRH 287 (366)
Q Consensus 213 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~---~~~~~~~~~~ 287 (366)
.+.+||..+. +.+.++..... -..+++ +++.|+.+..++.|.++|..+.+.+.++.... .++ +-+.+. +
T Consensus 117 ~v~V~D~~Tl-~~~~ti~~~~e-GwGLt~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---d 190 (268)
T 3nok_A 117 LLFTWSGMPP-QRERTTRYSGE-GWGLCY-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---N 190 (268)
T ss_dssp EEEEEETTTT-EEEEEEECSSC-CCCEEE-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred EEEEEECCcC-cEEEEEeCCCc-eeEEec-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe---C
Confidence 9999999987 67777664322 234444 56677777678999999999999888876532 222 233443 7
Q ss_pred CCeEEEecCCCeEEEEEeecCceEEEEecccccc-----cCCCCceeeEEEeeccCCCce-EEEEe
Q 017773 288 GGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTA-----AGSERGFVSSVCWRRVGEDEC-TLVAG 347 (366)
Q Consensus 288 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~-~l~s~ 347 (366)
|+..+..-.++.|.+.|..+++.+..+.+..... ...-....++|||+| +++ +++||
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp---~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP---GSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT---TTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC---CCCEEEEeC
Confidence 8766666678899999999999999988653211 112235689999999 443 45554
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.17 E-value=6.7e-08 Score=76.02 Aligned_cols=210 Identities=12% Similarity=0.117 Sum_probs=136.5
Q ss_pred eeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec
Q 017773 133 PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA 210 (366)
Q Consensus 133 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 210 (366)
.+.++......-...+.|++ ..|+.+.+.+| .|+.+|+. +++.+..+...... .-..++.. +..++...-.
T Consensus 11 v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~--tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLE--TGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETT--TCCEEEEEECCTTC-CEEEEEEE--TTEEEEEESS
T ss_pred EEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECC--CCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEee
Confidence 34455333333567899986 45556666654 89999999 88988888765431 12334444 4366666668
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeeccc--cee---eeEEEEEe
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV--NNR---NFVGLSVW 285 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~---~~~~~~~~ 285 (366)
++.+.+||.++. +.+.++...... ..++. +++.|+.+..++.|.++|..+.+.+.++.... .++ +-+.+
T Consensus 84 ~~~v~v~D~~tl-~~~~ti~~~~~G-wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--- 157 (243)
T 3mbr_X 84 NHEGFVYDLATL-TPRARFRYPGEG-WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--- 157 (243)
T ss_dssp SSEEEEEETTTT-EEEEEEECSSCC-CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE---
T ss_pred CCEEEEEECCcC-cEEEEEeCCCCc-eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE---
Confidence 999999999987 677776643322 45554 55556655668899999999998888876532 222 23333
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEecccccccC-----CCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAG-----SERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.+|+..+..-.+..|.+.|..+++.+..+.+....... ......++||++| +++.|+..+.. -=++|.++
T Consensus 158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~---~~~~lfVTGK~-wp~~~~v~ 232 (243)
T 3mbr_X 158 VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA---EHDRLFVTGKR-WPMLYEIR 232 (243)
T ss_dssp ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET---TTTEEEEEETT-CSEEEEEE
T ss_pred eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC---CCCEEEEECCC-CCcEEEEE
Confidence 37777766667889999999999999998866432111 1234689999999 44444444432 12455544
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.16 E-value=2.2e-07 Score=75.71 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=138.8
Q ss_pred CceEEEEECCCCCEEEEe-ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 43 DSIGVIEFDPSDSVFATG-GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
..+..++++|++..|+.+ ...+.|..++....... ...... ......+++.|+ .+.++++-...+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----~~~~~~---------~~~p~~ia~d~~-~~~lyv~d~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT----TIIRQD---------LGSPEGIALDHL-GRTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE----EEECTT---------CCCEEEEEEETT-TTEEEEEETTTT
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE----EEEECC---------CCCccEEEEEec-CCeEEEEECCCC
Confidence 357899999976555544 45678999998654321 111110 124688999986 144555556678
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC--CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD--DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
.|.+++++............. ....+++.|++..++++... .+.|..+++. +.....+.. ........++++|
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~-~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d---g~~~~~~~~-~~~~~P~gia~d~ 176 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLV-NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD---GTNRRILAQ-DNLGLPNGLTFDA 176 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCS-SEEEEEEETTTTEEEEEECCSSSCEEEEEETT---SCCCEEEEC-TTCSCEEEEEEET
T ss_pred EEEEEEcCCCCEEEEEECCCC-CccEEEEeeCCCEEEEEECCCCCcEEEEEecC---CCCcEEEEE-CCCCCCcEEEEcC
Confidence 999999875433222222222 67899999977777455443 4688888876 222222221 1223688999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccc-eee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-NRN 278 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~ 278 (366)
+++.++++-...+.|..+|+... ........ ......++...+.++++....+.|..+|..+++.+.++..... ...
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~ 254 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLY 254 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCC
T ss_pred CCCEEEEEECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccc
Confidence 87566667667789999998764 22222332 2233566665444555555678999999999988888864321 234
Q ss_pred eEEEEEecCC
Q 017773 279 FVGLSVWRHG 288 (366)
Q Consensus 279 ~~~~~~~~~~ 288 (366)
.+++. |++
T Consensus 255 gi~~~--~~~ 262 (267)
T 1npe_A 255 GITIA--LSQ 262 (267)
T ss_dssp CEEEE--CSC
T ss_pred eeeec--Ccc
Confidence 55555 554
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.16 E-value=2.6e-09 Score=94.53 Aligned_cols=238 Identities=13% Similarity=0.086 Sum_probs=156.6
Q ss_pred CCCCEEEEeec-CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEE-e-cCCCCcEEEEEc----------
Q 017773 52 PSDSVFATGGI-ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKW-K-PGTSGRVLGSGD---------- 118 (366)
Q Consensus 52 ~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~~~~---------- 118 (366)
+||+++..... ++.|.+.|+.+.+..... .+.. ......+++ + |+ +.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-----------g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-----------AKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-----------CCSEEEEEECCSSB--CSEEEEEECSCEESSCSS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-----------CCCCcceeeeecCC--CcEEEEecccccccCCCC
Confidence 37887777665 457999999886654321 1111 123677887 4 77 88888773
Q ss_pred --------CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--------------------------
Q 017773 119 --------YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-------------------------- 164 (366)
Q Consensus 119 --------~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-------------------------- 164 (366)
.++.+.+.|.++.+....+.... ....++++|+++++++++..+
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 34689999999998888776543 346788999999886555433
Q ss_pred -----------CcEEEeeCCCCCCce-eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC---------
Q 017773 165 -----------GTMQMWDPRCDGGKC-VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--------- 223 (366)
Q Consensus 165 -----------g~v~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------- 223 (366)
+.|.+.|.++..++. +..+.... ...++.++|||..+++++..+.+|.++|+.+..
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 246777777211333 34443221 567899999996677777788999999998641
Q ss_pred --CCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC----------Cceeeeeeccccee---eeEEEEEecC
Q 017773 224 --DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND----------SRVIRTYKGHVNNR---NFVGLSVWRH 287 (366)
Q Consensus 224 --~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~ 287 (366)
....... -......++|+ +|...++...|++|.+||+.+ .+.+.++..|..+- .......+||
T Consensus 320 ~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 320 RSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp GGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred ccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 0122222 22456889999 785556777899999999987 45667776664431 1122234599
Q ss_pred CCeEEEecC---CCe----------EEEEEeecCc
Q 017773 288 GGLLGCGSE---TNQ----------VFVYDVRWGE 309 (366)
Q Consensus 288 ~~~l~~~~~---dg~----------i~iwd~~~~~ 309 (366)
|++|++... |+. -.++|+..++
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 999998743 432 1788985544
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=1.8e-08 Score=84.96 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=139.7
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP 133 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 133 (366)
+..|..++.++.|..+|.. ++... ..... ...+.++...++ +. ++.++.++.|..+|.. ++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~---~~~~~----------~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKW---RFKTK----------KAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEE---EEECS----------SCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEE---EEcCC----------CceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CCE
Confidence 4467777778899999877 44322 11111 123555666665 55 5567778999999998 777
Q ss_pred eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCe
Q 017773 134 IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKK 213 (366)
Q Consensus 134 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 213 (366)
...+..... .+.++...+++.. ..++ +.|..+| . +++........ ...+.++...++| .+..++.++.
T Consensus 169 ~~~~~~~~~-~~~~~~~d~~g~l--~v~t--~~l~~~d-~--~g~~~~~~~~~--~~~~~~~~~~~~g--~l~v~t~~~g 236 (330)
T 3hxj_A 169 KWRFKTNDA-ITSAASIGKDGTI--YFGS--DKVYAIN-P--DGTEKWNFYAG--YWTVTRPAISEDG--TIYVTSLDGH 236 (330)
T ss_dssp EEEEECSSC-CCSCCEECTTCCE--EEES--SSEEEEC-T--TSCEEEEECCS--SCCCSCCEECTTS--CEEEEETTTE
T ss_pred eEEEecCCC-ceeeeEEcCCCEE--EEEe--CEEEEEC-C--CCcEEEEEccC--CcceeceEECCCC--eEEEEcCCCe
Confidence 666655444 6777777666654 3444 7899999 5 56666665532 2467888888876 4555667888
Q ss_pred EEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEE
Q 017773 214 AYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
+..+|... +.+..+......+..+....+..+..++.+|.|..+|. +++.+..+......+..+... +++. |..
T Consensus 237 l~~~~~~g--~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d--~~g~-l~~ 310 (330)
T 3hxj_A 237 LYAINPDG--TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVID--ENGT-IYF 310 (330)
T ss_dssp EEEECTTS--CEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEEC--TTCC-EEE
T ss_pred EEEECCCC--CEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEc--CCCE-EEE
Confidence 99887533 34444444333334455553556778888889999995 677776666544444444443 5665 566
Q ss_pred ecCCCeEEEEEeec
Q 017773 294 GSETNQVFVYDVRW 307 (366)
Q Consensus 294 ~~~dg~i~iwd~~~ 307 (366)
++.+|.+++...+.
T Consensus 311 gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 311 GTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTSCEEEEEC--
T ss_pred EcCCCeEEEEeccc
Confidence 78899999877653
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1.1e-07 Score=87.95 Aligned_cols=245 Identities=17% Similarity=0.167 Sum_probs=150.1
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC------CCcEEEEe
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY------DGVVMEYD 127 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iw~ 127 (366)
+..++.++.|+.|..+|..+++......... ... .......++ .. + + .++.+.. +|.|..+|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~---~~~~~~~P~----v~-~--~-~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTD-PAK---PYSITGAPR----VV-K--G-KVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSC-TTS---SCBCCSCCE----EE-T--T-EEEECCBCTTTCCBCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCC-CCC---cceecCCCE----EE-C--C-EEEEeCCCCCcCCCCEEEEEE
Confidence 4567788889999999999887655222110 000 000001111 11 2 4 4444432 58999999
Q ss_pred CCCCceeEeeecCCCC------------------------------ceeeEEeccCCCceEEEecCCC------------
Q 017773 128 LEKKVPIFERDEHGGR------------------------------RVWSVDYSKGDPVLGASGSDDG------------ 165 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~------------------------------~v~~i~~~~~~~~l~~~~~~dg------------ 165 (366)
..+++.+..+...... ....+++.+.+..+ +.++.++
T Consensus 185 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~v-y~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 185 ADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLL-YVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHSTTC
T ss_pred CCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEE-EEeCCCCCccccCCCCCCC
Confidence 9999988776532100 11236777776666 6666655
Q ss_pred -------cEEEeeCCCCCCceeEeecCCCCC-------CCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCCCCCeeEe
Q 017773 166 -------TMQMWDPRCDGGKCVSTVQPSASR-------SAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKMVDPVLVF 229 (366)
Q Consensus 166 -------~v~~~d~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~ 229 (366)
.|..+|.+ +++.+..++...|. .++....+..+|. ..++.++.+|.++++|.+++ +.+...
T Consensus 264 gd~l~~~~v~AlD~~--tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~ 340 (668)
T 1kv9_A 264 GDNLYLSSILAIRPD--TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAE 340 (668)
T ss_dssp CCCTTTTEEEEECTT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEE
T ss_pred CCceeeeeEEEEcCC--CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEeccc
Confidence 38899988 88888887754332 2222223333452 26888999999999999887 444222
Q ss_pred eccc------------CcE------------------------EEEEEc-CCCEEEEE----------------------
Q 017773 230 DGHR------------KTV------------------------TYIRFL-DVDTLVTA---------------------- 250 (366)
Q Consensus 230 ~~~~------------~~v------------------------~~~~~~-~~~~l~~~---------------------- 250 (366)
.... .++ ..++++ +..+++..
T Consensus 341 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~ 420 (668)
T 1kv9_A 341 KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN 420 (668)
T ss_dssp ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCC
T ss_pred cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccc
Confidence 1110 000 013444 33333321
Q ss_pred --------------eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 251 --------------GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 251 --------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
..+|.|..||+.+++.+-++..+. +.....+. ..+.+++.++.|+.|+.||.++++.++.++.
T Consensus 421 ~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~--t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 421 TAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLS--TAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp CSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeE--eCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 134789999999999887776433 22223344 5688899999999999999999999998865
Q ss_pred c
Q 017773 317 E 317 (366)
Q Consensus 317 ~ 317 (366)
+
T Consensus 498 ~ 498 (668)
T 1kv9_A 498 Q 498 (668)
T ss_dssp S
T ss_pred C
Confidence 4
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.11 E-value=8.3e-08 Score=76.15 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=126.0
Q ss_pred eeEEEEecCCCCcEEEEEcCCC--cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDG--VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
...+.|+ + +.++.+.+.+| .|+.+|+++++.+..+.... ........+.++.+....-.++.+.++|.. +.
T Consensus 45 tqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v~D~~--t~ 117 (262)
T 3nol_A 45 TEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFVWNIR--NL 117 (262)
T ss_dssp EEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETT--TC
T ss_pred cceEEEE-C--CEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEEEECc--cC
Confidence 5788898 5 77777777665 89999999999988887654 343333333466775666678999999999 88
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----CcEEEEEEcCCCEEEEEeC
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----KTVTYIRFLDVDTLVTAGT 252 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~ 252 (366)
+.+.++..... -..++ +++ ..|+.+..++.|.++|..+. +.+..+.... ..++.+.|.++..++..-.
T Consensus 118 ~~~~ti~~~~e---G~glt--~dg-~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLT--HND-QYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp CEEEEEECSSC---CCCEE--ECS-SCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCC---ceEEe--cCC-CEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 99998886442 12333 556 44555455788999999987 5555554321 3355677777766666667
Q ss_pred CCcEEEEecCCCceeeeeeccc------------ceeeeEEEEEecCCCeEEEecC
Q 017773 253 DGCLKLWNVNDSRVIRTYKGHV------------NNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
++.|.+.|.++++.+..+.... ...+.+++. |+++.|+..+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d--p~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD--KEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE--TTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc--CCCCEEEEECC
Confidence 8899999999999988876421 122455655 88776666554
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.10 E-value=3.9e-08 Score=90.98 Aligned_cols=273 Identities=12% Similarity=0.030 Sum_probs=148.1
Q ss_pred EEEECC-CCCEEEEeecCC-----------eEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE
Q 017773 47 VIEFDP-SDSVFATGGIAR-----------KIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 47 ~~~~s~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 114 (366)
++++.| ++++++.|+.+. .+.+||..+.+-.... ..... +.....++++.++ +.++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~---------~~~~~~~~~~~~~--g~ly 257 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTK---------HDMFCPGISMDGN--GQIV 257 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECS---------CCCSSCEEEECTT--SCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCCC---------CCCccccccCCCC--CCEE
Confidence 556677 888888887543 5788888775543211 11111 1122445777787 8999
Q ss_pred EEEcC-CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec-CC-----CcEEEeeCCCCCCceeEee----
Q 017773 115 GSGDY-DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS-DD-----GTMQMWDPRCDGGKCVSTV---- 183 (366)
Q Consensus 115 ~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~d-----g~v~~~d~~~~~~~~~~~~---- 183 (366)
+.|+. +..+.+||+.+++-...-.....+.-.+++..++++.+ +.|+ .+ ..+.+||.. +.+....-
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iy-v~GG~~~~~~~~~~~e~yd~~--t~~W~~~~~~~~ 334 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVF-TIGGSWSGGVFEKNGEVYSPS--SKTWTSLPNAKV 334 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEE-EECCCCCSSSCCCCEEEEETT--TTEEEEETTSCS
T ss_pred EeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEE-EEeCcccCCcccccceEeCCC--CCcceeCCCccc
Confidence 99884 46899999987754433222222223345566677766 6676 34 468999998 44332210
Q ss_pred -cCCCCCCCeEEEEEcCCCCcEEEEEecC---------CeEEEEecCCCCCCeeEeeccc---------CcEEEEEEc--
Q 017773 184 -QPSASRSAVCCVEFHPFGSSLVAAGCAD---------KKAYAYDVRKMVDPVLVFDGHR---------KTVTYIRFL-- 242 (366)
Q Consensus 184 -~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~-- 242 (366)
...... . ...+..++ .+++.|+.+ ..+..||..+. ........+. ..-.++.+.
T Consensus 335 ~p~~~~~-~--~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 335 NPMLTAD-K--QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp GGGCCCC-T--TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred ccccccc-c--cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCC
Confidence 000000 0 01122333 455555444 35678888765 2222221111 122444443
Q ss_pred CCCEEEEEeCCC-----------cEEEEecCCCceeeee--ecccceeeeEEEEEecCCCeEEEecCC-----------C
Q 017773 243 DVDTLVTAGTDG-----------CLKLWNVNDSRVIRTY--KGHVNNRNFVGLSVWRHGGLLGCGSET-----------N 298 (366)
Q Consensus 243 ~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g 298 (366)
++++++.|+.++ .|.+||..+..-.... ..+...... .....|++++++.|+.+ .
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~-~~~~l~~g~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH-TSVVLPDGSTFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC-EEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC-CeEECCCCCEEEECCcccCcCcCCCCccc
Confidence 677888888543 6778887765433222 112212111 11222799999999854 4
Q ss_pred eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCC
Q 017773 299 QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGS 349 (366)
Q Consensus 299 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 349 (366)
.+.+||..+.+-... ... ......-....+.| ++++++.||.
T Consensus 489 ~v~~ydp~t~~W~~~---~~~---~~~R~~hs~a~ll~---dg~v~v~GG~ 530 (656)
T 1k3i_A 489 TPEIYVPEQDTFYKQ---NPN---SIVRVYHSISLLLP---DGRVFNGGGG 530 (656)
T ss_dssp CCEEEEGGGTEEEEC---CCC---SSCCCTTEEEEECT---TSCEEEEECC
T ss_pred ceEEEcCCCCceeec---CCC---CCccccccHhhcCC---CcEEEecCCC
Confidence 689999887653321 111 11111122344557 8889999985
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.07 E-value=2.3e-07 Score=77.93 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=142.5
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC-------------------CCceeeEEeccCCCceEEE
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG-------------------GRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~v~~i~~~~~~~~l~~~ 160 (366)
..+++|.++ +++++++..++.|..|+..+++.. .+.... ...+..+++.+++..| +.
T Consensus 21 p~~i~~d~~--g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l-~v 96 (322)
T 2fp8_A 21 PNSFTFDST--NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL-YI 96 (322)
T ss_dssp CCCEECCTT--CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE-EE
T ss_pred ceEEEEcCC--CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE-EE
Confidence 567889988 887888888999999998765432 221100 0146889999733445 34
Q ss_pred ecCCCcEEEeeCCCCCCceeEeecC---CCCCCCeEEEEEcC-CCCcEEEEEec-----------------CCeEEEEec
Q 017773 161 GSDDGTMQMWDPRCDGGKCVSTVQP---SASRSAVCCVEFHP-FGSSLVAAGCA-----------------DKKAYAYDV 219 (366)
Q Consensus 161 ~~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~~~l~~~~~-----------------d~~i~i~d~ 219 (366)
+...+.+..+|.. .+. +..+.. .........+++.| +| .++++-.. ++.|+.+|.
T Consensus 97 ~d~~~~i~~~d~~--~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 97 VDCYYHLSVVGSE--GGH-ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EETTTEEEEECTT--CEE-CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EECCCCEEEEeCC--CCE-EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 4344558888876 332 222211 01123578899999 88 56555322 367888987
Q ss_pred CCCCCCeeEeecccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEec
Q 017773 220 RKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 220 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
.+. + ...+...-.....++++ +++.|+.+ ...+.|.+|++.... ....+....+ ...+++. ++|++.++..
T Consensus 173 ~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d--~~G~l~va~~ 247 (322)
T 2fp8_A 173 STK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN--ADGHFWVSSS 247 (322)
T ss_dssp TTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC--TTSCEEEEEE
T ss_pred CCC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC--CCCCEEEEec
Confidence 654 2 22222222345678998 77755544 566899999987531 1112211112 3345554 8998776654
Q ss_pred C----------CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 296 E----------TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 296 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
. .+.|..+|. .++.+..+..+. ......+.++++ . +++++++...++.|..++++.+
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~----g~~~~~~~~~~~-~---~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPP----PFAGEHFEQIQE-H---DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEECCT----TTTTSCCCEEEE-E---TTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEECCC----CCccccceEEEE-e---CCEEEEeecCCCceEEEecccc
Confidence 4 466777775 466666654321 111234666766 3 6777777778889999998754
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=9.2e-07 Score=80.15 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=146.5
Q ss_pred EEECCCCCE----EEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEc-----
Q 017773 48 IEFDPSDSV----FATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGD----- 118 (366)
Q Consensus 48 ~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----- 118 (366)
++++|.+.. |+.++.|+.|..+|..+++....... ..+.. .......++ .. + + .++.++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~-~~~~~---~~~~~ssP~----v~-~--g-~V~vg~~g~e~ 178 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN-SDIKV---GSTLTIAPY----VV-K--D-KVIIGSSGAEL 178 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC-CCGGG---TCBCCSCCE----EE-T--T-EEEECCBCGGG
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC-CCCCc---cceeecCCE----EE-C--C-EEEEEeccccc
Confidence 445444444 77788899999999988876542111 01000 000001111 11 2 4 445544
Q ss_pred -CCCcEEEEeCCCCceeEeeecCCCC------------------------------------ce-eeEEeccCCCceEEE
Q 017773 119 -YDGVVMEYDLEKKVPIFERDEHGGR------------------------------------RV-WSVDYSKGDPVLGAS 160 (366)
Q Consensus 119 -~dg~i~iw~~~~~~~~~~~~~~~~~------------------------------------~v-~~i~~~~~~~~l~~~ 160 (366)
.++.|+.+|..+++.+..+...... .+ ..+++.+....+ +.
T Consensus 179 g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~v-y~ 257 (599)
T 1w6s_A 179 GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLI-YF 257 (599)
T ss_dssp TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE-EE
T ss_pred CCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEE-EE
Confidence 3799999999999987766543210 01 124455555655 55
Q ss_pred ecCC----------------CcEEEeeCCCCCCceeEeecCCCCCC-------CeEEEEEc-CCCC--cEEEEEecCCeE
Q 017773 161 GSDD----------------GTMQMWDPRCDGGKCVSTVQPSASRS-------AVCCVEFH-PFGS--SLVAAGCADKKA 214 (366)
Q Consensus 161 ~~~d----------------g~v~~~d~~~~~~~~~~~~~~~~~~~-------~i~~~~~~-~~~~--~~l~~~~~d~~i 214 (366)
+..+ +.|.-+|.+ +++.+..++...|.. ...-+... .+|. ..++.++.+|.+
T Consensus 258 g~g~~~p~~~~~r~gd~~y~~sv~Ald~~--TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l 335 (599)
T 1w6s_A 258 GTGNPAPWNETMRPGDNKWTMTIFGRDAD--TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIV 335 (599)
T ss_dssp ECCCCSCSCGGGSCSCCTTSSEEEEEETT--TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEE
T ss_pred eCCCCccccCcccCCCccccceEEEEeCC--CCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEE
Confidence 5544 378889998 888888877654421 11112222 4453 467778899999
Q ss_pred EEEecCCCCCCeeEeecc-------------cCcE--------------------------EEEEEc-CCCEEEEE----
Q 017773 215 YAYDVRKMVDPVLVFDGH-------------RKTV--------------------------TYIRFL-DVDTLVTA---- 250 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~-------------~~~v--------------------------~~~~~~-~~~~l~~~---- 250 (366)
+++|.+++ +++...... ..++ ..++++ +..++++.
T Consensus 336 ~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~ 414 (599)
T 1w6s_A 336 YTLDRTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHI 414 (599)
T ss_dssp EEEETTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE
T ss_pred EEEECCCC-CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecccc
Confidence 99999887 444333211 0011 012222 22222211
Q ss_pred -----------------------------e------CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec
Q 017773 251 -----------------------------G------TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 251 -----------------------------~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
+ .+|.|..||+.+++.+-+..... +...-.+. ..+.+++.++
T Consensus 415 ~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~--tagg~vf~gt 491 (599)
T 1w6s_A 415 CMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMA--TAGDLVFYGT 491 (599)
T ss_dssp EEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEE--ETTTEEEEEC
T ss_pred ceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceE--ecCCEEEEEC
Confidence 1 35789999999998877765321 11111222 4577788899
Q ss_pred CCCeEEEEEeecCceEEEEecc
Q 017773 296 ETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 296 ~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.|+.|+.||.++|+.++.++++
T Consensus 492 ~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 492 LDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEeeCC
Confidence 9999999999999999998754
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.07 E-value=2.1e-07 Score=84.30 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=162.2
Q ss_pred CCEEEEeec-CCeEEEEEc-eecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 017773 54 DSVFATGGI-ARKIRIYNI-KSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK 131 (366)
Q Consensus 54 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 131 (366)
+..++.++. ++.|.-+|. .+++............. .....++ ..-..++.. +..++.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~-~~~~~~~-~~~~~~~~~----~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST-KAVMCCD-VVDRGLAYG----AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG-GGGCTTC-SCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc-ccccccc-ccccccEEE----CCEEEEEeCCCEEEEEECCCC
Confidence 345555566 788988998 77776542111100000 0000000 000112222 557788888999999999999
Q ss_pred ceeEeeecCCCCceeeEEecc--CCCceEEEecC------CCcEEEeeCCCCCCceeEeecCCCCC--------------
Q 017773 132 VPIFERDEHGGRRVWSVDYSK--GDPVLGASGSD------DGTMQMWDPRCDGGKCVSTVQPSASR-------------- 189 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~~~-------------- 189 (366)
+.+..........-..+.-.| .+..+ +.++. ++.|..+|.+ +++.+..+......
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~~g~v-~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVAKDTV-LMGCSGAELGVRGAVNAFDLK--TGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEE-EEECBCGGGTCCCEEEEEETT--TCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEEecCCCCCccceeccCCEEECCEE-EEEecCCccCCCCEEEEEECC--CCcEEEEEccCCCccccccCcccccccc
Confidence 888766543210000111111 13445 44443 7899999998 78887766543210
Q ss_pred ----------------------CCeEEEEEcCCCCcEEEEEecC----------------CeEEEEecCCCCCCeeEeec
Q 017773 190 ----------------------SAVCCVEFHPFGSSLVAAGCAD----------------KKAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 190 ----------------------~~i~~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~ 231 (366)
.....+++.+.. ..++.+..+ +.|..+|.+++ +.+-.+..
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~ 290 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK 290 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence 000235666765 455555432 36999999987 45444432
Q ss_pred --c--------cCcEEEEEEc-CC---CEEEEEeCCCcEEEEecCCCceeeeeeccc-------------ceee------
Q 017773 232 --H--------RKTVTYIRFL-DV---DTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-------------NNRN------ 278 (366)
Q Consensus 232 --~--------~~~v~~~~~~-~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~------ 278 (366)
| ..++. +... ++ ..++.++.+|.+.++|..+++.+..++... .++.
T Consensus 291 ~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp STTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 1 12222 2222 45 357788899999999999998877654321 0110
Q ss_pred ---------e---------EEEEEecCCCeEEEec-------------------------------------CCCeEEEE
Q 017773 279 ---------F---------VGLSVWRHGGLLGCGS-------------------------------------ETNQVFVY 303 (366)
Q Consensus 279 ---------~---------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~iw 303 (366)
+ -..+++|+..+++... .+|.|..|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 0 0123447766666542 35789999
Q ss_pred EeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 304 DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
|+.+++.++.+... ..+.+..... .+..++.++.||.|+.||.+++++
T Consensus 450 D~~tG~~~W~~~~~---------~~~~~~~~~t---~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 450 DLTTGKAKWTKWEK---------FAAWGGTLYT---KGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CTTTCCEEEEEEES---------SCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCCCCEEEEecCC---------CCccceeEEE---CCCEEEEEcCCCeEEEEECCCCCE
Confidence 99999999887542 1222222222 334677788999999999887653
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.06 E-value=2.7e-06 Score=80.61 Aligned_cols=288 Identities=12% Similarity=0.101 Sum_probs=169.2
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|.++...+++.+.+ |+.++-+.+|+..+.+... ........ ..-....|.++...++ |.+.+ |+.+
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~----~~~~~~~~--~~l~~~~i~~i~~d~~--g~lWi-gt~~- 282 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKN----YLHSPSNP--KSISSNYIRSLAMDSQ--NRLWI-GTFN- 282 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEE----ECCCTTCT--TSCSCSBEEEEEECTT--SCEEE-EESS-
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEE----eecCCCCc--cccCCCeEEEEEEcCC--CCEEE-EeCC-
Confidence 56789998888886555 4444348888876533211 11000000 0001246899988876 66554 4445
Q ss_pred cEEEEeCCCCceeEeeec------CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC-----CCCC
Q 017773 122 VVMEYDLEKKVPIFERDE------HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS-----ASRS 190 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~-----~~~~ 190 (366)
-|.+||..+++....... -....|.++...++|.. ..|+.++-|..++.. .... ..+... -...
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l--Wigt~~~Gl~~~~~~--~~~~-~~~~~~~~~~~l~~~ 357 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM--WLGTYFGGLNYYHPI--RNRF-KNIRNIPYKNSLSDN 357 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE--EEEESSSCEEEECGG--GGSS-EEECCCTTSSSCSCS
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE--EEEECCCCeEEeCCC--cccc-eEEcCCCCCCCCCCC
Confidence 488999877654332211 11237999998887764 556677779999876 2222 222210 1234
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec---------ccCcEEEEEEc-CCCEEEEEeCCCcEEEEe
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG---------HRKTVTYIRFL-DVDTLVTAGTDGCLKLWN 260 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd 260 (366)
.|.++...++| . |..|+.++-|..||..+. ....+.. ....|.++... ++..|..|+.++-|..||
T Consensus 358 ~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 358 VVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQ--RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp SEEEEEECTTS-C-EEEEESSSCEEEECTTTC--CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred eeEEEEECCCC-C-EEEEECCCCeEEEcCCCC--cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 69999999887 3 455777778999998764 2333221 23568888887 666477777777799999
Q ss_pred cCCCceeeeeec-----ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEee
Q 017773 261 VNDSRVIRTYKG-----HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWR 335 (366)
Q Consensus 261 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 335 (366)
..+++.. .+.. ....+..+... ++|.+.+... + -|.+||..+++..... ... ....-....|.++...
T Consensus 434 ~~~~~~~-~~~~~~~~l~~~~v~~i~~d--~~g~lwigt~-~-Gl~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 434 RNSGQVE-NFNQRNSQLVNENVYAILPD--GEGNLWLGTL-S-ALVRFNPEQRSFTTIE-KEK-DGTPVVSKQITTLFRD 506 (795)
T ss_dssp TTTCCEE-EECTTTSCCSCSCEEEEEEC--SSSCEEEEES-S-CEEEEETTTTEEEECC-BCT-TCCBCCCCCEEEEEEC
T ss_pred CCCCcEE-EeecCCCCcCCCeeEEEEEC--CCCCEEEEec-C-ceeEEeCCCCeEEEcc-ccc-cccccCCceEEEEEEC
Confidence 8876533 2321 12344444433 6777655544 4 4888988766443211 100 0001123568899888
Q ss_pred ccCCCceEEEEeCCCCcEEEEEeccc
Q 017773 336 RVGEDECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 336 ~~~~~~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+ +|.+.+... +| |..|+.+++
T Consensus 507 ~---~g~lWigt~-~G-l~~~~~~~~ 527 (795)
T 4a2l_A 507 S---HKRLWIGGE-EG-LSVFKQEGL 527 (795)
T ss_dssp T---TCCEEEEES-SC-EEEEEEETT
T ss_pred C---CCCEEEEeC-Cc-eEEEeCCCC
Confidence 7 776666554 44 778887543
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=2.6e-06 Score=80.73 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=167.4
Q ss_pred eEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEE
Q 017773 45 IGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVM 124 (366)
Q Consensus 45 i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 124 (366)
|.++...+++.+.+ |+.++-|..|+..+.+... .... .....|.++...++ +.+.+ |+.++-+.
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~----~~~~--------~~~~~i~~i~~d~~--g~lwi-gt~~~Gl~ 238 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK----VIPI--------LGTKQIQAILQQSP--TRIWV-ATEGAGLF 238 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE----CC------------CCCEEEEEEEET--TEEEE-EEBSSCEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE----ecCC--------CCCCeeEEEEEcCC--CCEEE-EECCCCeE
Confidence 88888888886555 5554458888876543211 0000 01245888888876 66555 44443488
Q ss_pred EEeCCCCceeEeeecC------CCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC------CCCCCe
Q 017773 125 EYDLEKKVPIFERDEH------GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS------ASRSAV 192 (366)
Q Consensus 125 iw~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~------~~~~~i 192 (366)
.||..+++........ ....|.++...+++... .|+.+ -|.+||.. .... ..+... -....|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW--igt~~-Gl~~~~~~--~~~~-~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 239 LINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW--IGTFN-DLNIYHEG--TDSF-ASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp EEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE--EEESS-CEEEEETT--TTEE-EEECCCTTSTTSCSSSCE
T ss_pred EEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE--EEeCC-hhheEcCC--CCeE-EEEecCCCCCCCCCCCcE
Confidence 9998776543322111 12379999988877654 34444 58899977 4433 233211 123479
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-------ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCc
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-------HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
.++...++| . +..|+.++-|..|+..+. ....+.. ....|.++.......|..|+.++-|..||..+++
T Consensus 313 ~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 313 RSIFMDSQG-G-MWLGTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp EEEEECTTS-C-EEEEESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC
T ss_pred EEEEEeCCc-C-EEEEECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc
Confidence 999999987 3 556667788999987654 2222221 2346888888733456667777779999987764
Q ss_pred eeeeeec--------ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeecc
Q 017773 266 VIRTYKG--------HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRV 337 (366)
Q Consensus 266 ~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 337 (366)
....... ....|..+... ++++.|..|+.++-|..||..+++... +.... .......|.++...+
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~---~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVD--EKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRN---SQLVNENVYAILPDG- 461 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEE--TTTTEEEEEETTTEEEEEETTTCCEEE-ECTTT---SCCSCSCEEEEEECS-
T ss_pred EEEEecCCCCcccCCCCccEEEEEEc--CCCCEEEEEeCcCceeEEeCCCCcEEE-eecCC---CCcCCCeeEEEEECC-
Confidence 3322111 12344444444 778746667776779999988765432 21110 012345788998877
Q ss_pred CCCceEEEEeCCCCcEEEEEecc
Q 017773 338 GEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 338 ~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+|.+.+... +| |.+|+.++
T Consensus 462 --~g~lwigt~-~G-l~~~~~~~ 480 (795)
T 4a2l_A 462 --EGNLWLGTL-SA-LVRFNPEQ 480 (795)
T ss_dssp --SSCEEEEES-SC-EEEEETTT
T ss_pred --CCCEEEEec-Cc-eeEEeCCC
Confidence 676666554 54 77888655
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=3.1e-07 Score=83.20 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=146.2
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC------CCcEEEEe
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY------DGVVMEYD 127 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iw~ 127 (366)
+..++.++.|+.|..+|..+++....... ..+.. .......++ .. + + .++.++. ++.|..+|
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~~---~~~~~~~P~----v~-~--g-~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEV-CDPKV---GSTLTQAPF----VA-K--D-TVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC-CCGGG---TCBCCSCCE----EE-T--T-EEEEECBCGGGTCCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecC-CCCCc---cceeccCCE----EE-C--C-EEEEEecCCccCCCCEEEEEE
Confidence 45677777899999999988876542211 11000 000001111 11 2 4 4455544 78999999
Q ss_pred CCCCceeEeeecCCCC------------------------------------ce-eeEEeccCCCceEEEecCC------
Q 017773 128 LEKKVPIFERDEHGGR------------------------------------RV-WSVDYSKGDPVLGASGSDD------ 164 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~------------------------------------~v-~~i~~~~~~~~l~~~~~~d------ 164 (366)
..+++.+..+...... .+ ..+++.+....+ +.+..+
T Consensus 183 ~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v-y~~~g~~~~~~~ 261 (571)
T 2ad6_A 183 LKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF-YYGSGNPAPWNE 261 (571)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE-EEECCCCSCSCG
T ss_pred CCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE-EEECCCCccccC
Confidence 9999888766543210 00 124556655555 444422
Q ss_pred ----------CcEEEeeCCCCCCceeEeecCCCCC-------CCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCCCCC
Q 017773 165 ----------GTMQMWDPRCDGGKCVSTVQPSASR-------SAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKMVDP 225 (366)
Q Consensus 165 ----------g~v~~~d~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~ 225 (366)
+.|..+|.+ +++.+..++...+. ....-+...++|. .+++.++.+|.++++|.+++ +.
T Consensus 262 ~~~~gd~~y~~~v~Ald~~--tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~ 338 (571)
T 2ad6_A 262 TMRPGDNKWTMTIWGRDLD--TGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NL 338 (571)
T ss_dssp GGSCSCCTTTTEEEEEETT--TCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CE
T ss_pred CccCCCceeEEEEEEEecC--CCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-CE
Confidence 358889988 78888877654321 1111122224552 35778889999999999887 44
Q ss_pred eeEeeccc-------------CcE--------------------------EEEEEc-CCCEEEEEe--------------
Q 017773 226 VLVFDGHR-------------KTV--------------------------TYIRFL-DVDTLVTAG-------------- 251 (366)
Q Consensus 226 ~~~~~~~~-------------~~v--------------------------~~~~~~-~~~~l~~~~-------------- 251 (366)
+....... .++ ..++++ +..+++...
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 44332111 111 123454 344554432
Q ss_pred -----------------------CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecC
Q 017773 252 -----------------------TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWG 308 (366)
Q Consensus 252 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 308 (366)
.+|.|..||..+++.+-++.... .+....+. ..+..++.++.||.|+.+|.++|
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~--t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLY--TKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEE--ETTTEEEEECTTSEEEEEETTTC
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEE--ECCCEEEEEcCCCeEEEEECCCC
Confidence 35789999999999887776432 22222222 45667778999999999999999
Q ss_pred ceEEEEecc
Q 017773 309 EPVWVHDFE 317 (366)
Q Consensus 309 ~~~~~~~~~ 317 (366)
+.++.+...
T Consensus 496 ~~lw~~~~~ 504 (571)
T 2ad6_A 496 KELWNFKMP 504 (571)
T ss_dssp CEEEEEECS
T ss_pred CEEEEEeCC
Confidence 999988754
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.03 E-value=5.1e-07 Score=75.78 Aligned_cols=246 Identities=11% Similarity=-0.029 Sum_probs=143.2
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee-----c-----eeeeecCCceeEEEEec-CCCCc
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV-----C-----DYYICTPAKLSSLKWKP-GTSGR 112 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~v~~~~~~~-~~~~~ 112 (366)
....++++++|++++++..++.|..|+..+.... .+...... + .........+..+++.+ + ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~--g~ 93 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV----DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN--NQ 93 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE----EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT--TE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE----EEecccccccccccccccchhccccCCCCceEEEcCCC--Cc
Confidence 3567889999987888888899999987653221 11100000 0 00000112478899997 5 65
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEee---ecCCCCceeeEEecc-CCCceEEEecC-----------------CCcEEEee
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPIFER---DEHGGRRVWSVDYSK-GDPVLGASGSD-----------------DGTMQMWD 171 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~v~~i~~~~-~~~~l~~~~~~-----------------dg~v~~~d 171 (366)
++++.. .+.|..+|..++...... ..........+++.+ ++..+ ++-.. ++.|..+|
T Consensus 94 l~v~d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~-v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVY-FTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEE-EEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEE-EECCcccccccccceehcccCCCceEEEEe
Confidence 555434 445888888765422111 111112467899999 88655 44322 36788888
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCC-CeeEeecccCcEEEEEEc-CCCEEEE
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVD-PVLVFDGHRKTVTYIRFL-DVDTLVT 249 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~ 249 (366)
.. .++....... ......++++|++..++++-...+.|+.|++..... ....+....+ ...+++. ++++.++
T Consensus 172 ~~--~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 172 PS--TKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp TT--TTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred CC--CCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 76 4433222211 124567999999843555556678999999875311 1222221223 6778888 7776666
Q ss_pred EeC----------CCcEEEEecCCCceeeeeeccc----ceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 250 AGT----------DGCLKLWNVNDSRVIRTYKGHV----NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 250 ~~~----------d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
... .+.|..+|. .++.+..+.... ..+..+.. .+++++++...++.|..+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~---~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE---HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE---ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE---eCCEEEEeecCCCceEEEeccc
Confidence 544 467888886 477776665432 22333333 4677777777788899988763
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.02 E-value=3.7e-06 Score=72.35 Aligned_cols=245 Identities=9% Similarity=-0.041 Sum_probs=148.1
Q ss_pred ceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcE
Q 017773 44 SIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVV 123 (366)
Q Consensus 44 ~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 123 (366)
.-+|.+..+.+ +|+.+. ...|+..++....... .... ......++|.+. .+.++++-...+.|
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~---~~~~-----------~~~~~gl~~d~~-~~~ly~~D~~~~~I 140 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL---LLNN-----------LENAIALDFHHR-RELVFWSDVTLDRI 140 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEE---EECS-----------CSCEEEEEEETT-TTEEEEEETTTTEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEEE---EecC-----------CCccEEEEEecC-CCeEEEEeCCCCcE
Confidence 34455555533 444443 3467777776533211 1111 234789999976 25555666677899
Q ss_pred EEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc
Q 017773 124 MEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS 203 (366)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (366)
..++++.......+..... ....+++.+.+..|+++-...+.|.+.++. .......+. ........++++|.++.
T Consensus 141 ~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~~~~~l~~--~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 141 LRANLNGSNVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW--QSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEEETTSCCEEEEECSSCS-CCCCEEEETTTTEEEEEETTTTEEEECBTT--SCSCEEEEC--SSCSCEEEEEEETTTTE
T ss_pred EEEecCCCCcEEEEeCCCC-CccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CCceEEeec--CCCCCCcEEEEEcCCCe
Confidence 9999987654333332222 557889988777776777777889999987 333222232 22347899999997756
Q ss_pred EEEEEecC-CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCE-EEEEeCCCcEEEEecCCCceeeeeecccceeeeE
Q 017773 204 LVAAGCAD-KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDT-LVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFV 280 (366)
Q Consensus 204 ~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (366)
++.+-... +.|+.+++... .........-...+.|+++ ++.. +++-...+.|..+|+........+.........+
T Consensus 216 ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi 294 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 294 (386)
T ss_dssp EEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred EEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence 66665555 78999988764 2323333333456889998 4554 4555566789999986433222222222222344
Q ss_pred EEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 281 GLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 281 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
++ ..+.++++-...+.|..++..+++....+
T Consensus 295 av---~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 295 TV---FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EE---ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EE---ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 44 24566667777888988886666655554
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.02 E-value=1.6e-07 Score=74.46 Aligned_cols=158 Identities=9% Similarity=0.064 Sum_probs=115.0
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC 179 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~ 179 (366)
...+.|+. +.++.+.+.+|.|+++|+++++.+..+ ... ........+.++.+....-.++.+.+||.. +.+.
T Consensus 57 tqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~--Tl~~ 128 (268)
T 3nok_A 57 TQGLVFHQ---GHFFESTGHQGTLRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQLTWTEGLLFTWSGM--PPQR 128 (268)
T ss_dssp EEEEEEET---TEEEEEETTTTEEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEEESSSCEEEEEETT--TTEE
T ss_pred cceEEEEC---CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEEEccCCEEEEEECC--cCcE
Confidence 56888874 778888888899999999999988877 333 333322333456665666678999999999 8899
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----CcEEEEEEcCCCEEEEEeCCC
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----KTVTYIRFLDVDTLVTAGTDG 254 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~d~ 254 (366)
+.++..... -..++ +++ ..|+.+..++.|.++|..+. +.+..+.... ..++.+.|.++..++..-.+.
T Consensus 129 ~~ti~~~~e---GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~ 201 (268)
T 3nok_A 129 ERTTRYSGE---GWGLC--YWN-GKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECANGVIYANIWHSS 201 (268)
T ss_dssp EEEEECSSC---CCCEE--EET-TEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS
T ss_pred EEEEeCCCc---eeEEe--cCC-CEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC
Confidence 998886432 23344 456 45555566899999999987 5555554322 245677887776666666788
Q ss_pred cEEEEecCCCceeeeeec
Q 017773 255 CLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~ 272 (366)
.|.+.|.++++.+..+..
T Consensus 202 ~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEEEECTTTCBEEEEEEC
T ss_pred eEEEEeCCCCcEEEEEEC
Confidence 999999999998888764
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.02 E-value=4.9e-06 Score=70.51 Aligned_cols=248 Identities=9% Similarity=-0.033 Sum_probs=149.6
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
+.+..+|.+..+++ +|+.+. ...|+..++....... .... ......++|++. ++.++++-...
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~---~~~~-----------~~~~~~l~~d~~-~~~ly~~D~~~ 94 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL---LLNN-----------LENAIALDFHHR-RELVFWSDVTL 94 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEE---EECS-----------CSCEEEEEEETT-TTEEEEEETTT
T ss_pred CCCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEE---eecC-----------CCceEEEEEecc-ccEEEEEeccC
Confidence 34556777777744 444443 3457777765432211 1111 134789999976 25555565677
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
+.|..++++............. ....+++.+.+..++++-...+.|.+.++. .......+. ........++++|.
T Consensus 95 ~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~--~~l~~P~~iavdp~ 169 (349)
T 3v64_C 95 DRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW--QSLEKPRAIALHPM 169 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEC--TTCSCEEEEEEETT
T ss_pred CceEEEecCCCCceEEEeCCCC-CccEEEEecCCCeEEEEcCCCCeEEEEcCC--CCceEEEEe--CCCCCcceEEEecC
Confidence 8999999987654443333222 567889988777776777778899999987 332222222 22346799999997
Q ss_pred CCcEEEEEecC-CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeCCCcEEEEecCCCceeeeeeccccee
Q 017773 201 GSSLVAAGCAD-KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGTDGCLKLWNVNDSRVIRTYKGHVNNR 277 (366)
Q Consensus 201 ~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (366)
++.++.+-... +.|..+++... .........-...+.++++ ++..| ++-...+.|..+|+........+.......
T Consensus 170 ~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P 248 (349)
T 3v64_C 170 EGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 248 (349)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred cCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCc
Confidence 65666665555 88999988764 2222222233456889998 55555 454556789999976433222222222222
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
..+++. .+.++++-...+.|..++..+|+....+
T Consensus 249 ~giav~---~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 249 FAITVF---EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEE---CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 344442 4566666667788888886566554444
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.01 E-value=6e-07 Score=70.62 Aligned_cols=183 Identities=9% Similarity=-0.027 Sum_probs=125.9
Q ss_pred CceeEEEEecCCCCcEEEEEcCC--CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYD--GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD 175 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~ 175 (366)
.-...+.|++ +.++.+.+.+ ..|+.+|+++++.+........ .........++.+....-.++.+.++|..
T Consensus 21 ~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~~~~ly~ltw~~~~v~v~D~~-- 93 (243)
T 3mbr_X 21 AFTEGLFYLR---GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--YFGAGIVAWRDRLIQLTWRNHEGFVYDLA-- 93 (243)
T ss_dssp CCEEEEEEET---TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTEEEEEESSSSEEEEEETT--
T ss_pred cccccEEEEC---CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--cceeEEEEeCCEEEEEEeeCCEEEEEECC--
Confidence 3466899986 5666666654 4899999999999888866543 33333333456675667778999999999
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc-----CcEEEEEEcCCCEEEEE
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR-----KTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~ 250 (366)
+.+.+.++..... -..++ +++ ..|+.+..++.|.++|..+. +.+..+.... ..++.+.+.++..++..
T Consensus 94 tl~~~~ti~~~~~---Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGE---GWALT--SDD-SHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp TTEEEEEEECSSC---CCEEE--ECS-SCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred cCcEEEEEeCCCC---ceEEe--eCC-CEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 8899999886542 23444 456 34445556889999999987 5655554322 34567777777777666
Q ss_pred eCCCcEEEEecCCCceeeeeeccc-------------ceeeeEEEEEecCCCeEEEecC
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHV-------------NNRNFVGLSVWRHGGLLGCGSE 296 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~ 296 (366)
-.+..|.+.|.++++.+..+.... .-.+.+++. |+++.|+..+.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d--~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD--AEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE--TTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc--CCCCEEEEECC
Confidence 678899999999999888876321 123445555 87666655543
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=3.8e-07 Score=82.65 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=162.0
Q ss_pred CCEEEEeec-CCeEEEEEc-eecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcE----EEEEcCCCcEEEEe
Q 017773 54 DSVFATGGI-ARKIRIYNI-KSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRV----LGSGDYDGVVMEYD 127 (366)
Q Consensus 54 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~~~~~dg~i~iw~ 127 (366)
+..|++++. ++.|.-+|. .+++............. ... .+.......+++.|. +.. ++.++.|+.|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~-~~~-~~~~~~~~g~av~p~--~g~~~~rV~v~t~dg~l~AlD 137 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAA-RAV-ACCDLVNRGLAYWPG--DGKTPALILKTQLDGNVAALN 137 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG-GGG-CSSCSCCCCCEEECC--CSSSCCEEEEECTTSEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccc-ccc-ccccccccceEEEec--CCcceeEEEEEcCCCEEEEEE
Confidence 345555566 788888898 77776542211100000 000 000000123455443 333 78888899999999
Q ss_pred CCCCceeEeeecCCC---Cceee-EEeccCCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCCCC-------
Q 017773 128 LEKKVPIFERDEHGG---RRVWS-VDYSKGDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSASRS------- 190 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~---~~v~~-i~~~~~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~~~------- 190 (366)
..+++.+........ ..+.+ -... +..+ +.++ .+|.|+-+|.+ +++.+..+.......
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V-~vg~~g~e~g~~g~v~A~D~~--TG~~~W~~~~~~~~~~~~~~p~ 212 (599)
T 1w6s_A 138 AETGETVWKVENSDIKVGSTLTIAPYVV--KDKV-IIGSSGAELGVRGYLTAYDVK--TGEQVWRAYATGPDKDLLLASD 212 (599)
T ss_dssp TTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEE-EECCBCGGGTCCCEEEEEETT--TCCEEEEEESSSCHHHHTBCTT
T ss_pred CCCCCEEEeecCCCCCccceeecCCEEE--CCEE-EEEecccccCCCCeEEEEECC--CCcEEEEEcCCCCccccccccc
Confidence 999998776544321 01111 1111 3344 4444 37899999999 788877765432100
Q ss_pred -----------------------------CeEEEEEcCCCCcEEEEEecC----------------CeEEEEecCCCCCC
Q 017773 191 -----------------------------AVCCVEFHPFGSSLVAAGCAD----------------KKAYAYDVRKMVDP 225 (366)
Q Consensus 191 -----------------------------~i~~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~ 225 (366)
.-...++.+.. .+++.+..+ +.|..+|.+++ +.
T Consensus 213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~ 290 (599)
T 1w6s_A 213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EA 290 (599)
T ss_dssp TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CE
T ss_pred cccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ce
Confidence 00134566665 566666554 38999999988 45
Q ss_pred eeEeec--cc--------CcEEEEEE--cCC---CEEEEEeCCCcEEEEecCCCceeeeeeccc-------------cee
Q 017773 226 VLVFDG--HR--------KTVTYIRF--LDV---DTLVTAGTDGCLKLWNVNDSRVIRTYKGHV-------------NNR 277 (366)
Q Consensus 226 ~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~ 277 (366)
+-.+.. |. .++. +.. .++ ..++.++.+|.+.++|.++++++....... .++
T Consensus 291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 369 (599)
T 1w6s_A 291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV 369 (599)
T ss_dssp EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCcee
Confidence 444432 21 2222 222 245 467778899999999999998876654211 000
Q ss_pred e------------------------eEEEEEecCCCeEEEe---------------------------------c-----
Q 017773 278 N------------------------FVGLSVWRHGGLLGCG---------------------------------S----- 295 (366)
Q Consensus 278 ~------------------------~~~~~~~~~~~~l~~~---------------------------------~----- 295 (366)
. .-..+++|+..++++. +
T Consensus 370 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~ 449 (599)
T 1w6s_A 370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY 449 (599)
T ss_dssp ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred eccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccC
Confidence 0 0012233554444331 1
Q ss_pred -CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 296 -ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 296 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.+|.|..||+.+++.++...... ++.+-.... .+.+++.++.||.|+.||.+++++
T Consensus 450 ~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 450 EGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp BCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCcCeEEEEECCCCCEEeEecCCC---------CccCcceEe---cCCEEEEECCCCeEEEEECCCCCE
Confidence 35789999999999998875321 111111112 334677788999999999887653
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.96 E-value=8.7e-06 Score=68.97 Aligned_cols=210 Identities=7% Similarity=-0.063 Sum_probs=134.3
Q ss_pred CCceEEEEECCCCCEEE-EeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVFA-TGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...+..++|++.+..|. +-...+.|..++........ +.... ......+++.+. .+.++++-...
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~----~~~~~---------~~~p~glavd~~-~g~ly~~d~~~ 137 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE----VVSTG---------LESPGGLAVDWV-HDKLYWTDSGT 137 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----EECSS---------CSCCCEEEEETT-TTEEEEEETTT
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE----EEeCC---------CCCccEEEEecC-CCeEEEEcCCC
Confidence 34478999997655554 44456788888877543211 11110 123577889875 25566666677
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|.+.+++.......+...-. ....+++.|.+..++++-... +.|..+++. +.....+.. ........++++|
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~-~P~~iavdp~~g~ly~td~~~~~~I~r~~~d---G~~~~~~~~-~~~~~PnGla~d~ 212 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSMD---GSGRRIIAD-THLFWPNGLTIDY 212 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCS-CEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCSCEESCC-SSCSCEEEEEEET
T ss_pred CeEEEEcCCCCceEEEEeCCCC-CcceEEEecCcCeEEEeccCCCCEEEEEeCC---CCCcEEEEE-CCCCCcceEEEeC
Confidence 8999999876543333333323 678999999888775665555 788888887 333333321 2233688999998
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
+++.++++-...+.|..+|+... .....+.........+++..+.++++-...+.|..++..+++.+..+.
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 77566666667789999998764 333333333345567777655566666677888888876776666554
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.96 E-value=3.5e-06 Score=72.46 Aligned_cols=211 Identities=7% Similarity=-0.070 Sum_probs=134.6
Q ss_pred CCceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...+..++|++.+..| ++-...+.|..++.+...... +.... ......+++.+. .+.++++-...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~----~~~~~---------~~~p~glavd~~-~g~lY~~d~~~ 180 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE----VVSTG---------LESPGGLAVDWV-HDKLYWTDSGT 180 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE----EECSS---------CSCCCCEEEETT-TTEEEEEETTT
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE----EEeCC---------CCCccEEEEEeC-CCeEEEEcCCC
Confidence 3457899999765544 444456788888876543211 11110 123567888875 25566666667
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|.+.+++.......+..... ....+++.|.+..++++-... +.|..+++. ......... ........|+++|
T Consensus 181 ~~I~~~~~dg~~~~~l~~~~l~-~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~--~~~~~PnGlavd~ 255 (386)
T 3v65_B 181 SRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD--THLFWPNGLTIDY 255 (386)
T ss_dssp TEEEECBTTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC--SSCSCEEEEEEEG
T ss_pred CeEEEEeCCCCceEEeecCCCC-CCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE--CCCCCeeeEEEeC
Confidence 8899988875543333333323 678999999888775665555 788888887 222222222 2223688999998
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 272 (366)
+++.++++-...+.|..+|+... .....+.........+++..+.++++-...+.|..++..+++.+..+..
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 77566666667789999998764 3333333333455677776556667777788899998777776666653
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1e-05 Score=76.52 Aligned_cols=294 Identities=12% Similarity=0.014 Sum_probs=164.9
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceeccccccee-eeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVV-AVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...|.++...++|. |..|+..+-|.+++..+........ .+................|.++...++ |. |..|+.+
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CC-EEEEEBS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CC-EEEEecC
Confidence 46799999998886 4445553558888876643321000 000000000000112346888888876 65 5566666
Q ss_pred CcEEEEeCCCCceeEeee--------cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC--CCCCC
Q 017773 121 GVVMEYDLEKKVPIFERD--------EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP--SASRS 190 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~ 190 (366)
+-|..++...+....... .-....|.++...+++.. ..|+.++-|..||.. +.. ...+.. .....
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l--Wigt~~~Gl~~~~~~--~~~-~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL--WIGTDGGGINVFENG--KRV-AIYNKENRELLSN 407 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE--EEEEBSSCEEEEETT--EEE-EECC-----CCCS
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE--EEEeCCCcEEEEECC--CCe-EEEccCCCCCCCc
Confidence 678889887654322211 111236889988876654 456656668889876 322 222110 12235
Q ss_pred CeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---cccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCcee
Q 017773 191 AVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---GHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 191 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
.|.++...++| . |..|+.++-+..+|.++. ....+. .....|.++.......|..++. +-|..||..+++..
T Consensus 408 ~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 408 SVLCSLKDSEG-N-LWFGTYLGNISYYNTRLK--KFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp BEEEEEECTTS-C-EEEEETTEEEEEECSSSC--EEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred ceEEEEECCCC-C-EEEEeccCCEEEEcCCCC--cEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 78999998877 4 444667677999998764 233332 1345788888773345655665 55889998776543
Q ss_pred eeeecc-----cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCce
Q 017773 268 RTYKGH-----VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC 342 (366)
Q Consensus 268 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 342 (366)
...... ...+..+... ++|.+.+....+| |..||..+++.. .+.... .-....|.++...+ +|.
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d--~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~----~l~~~~i~~i~~d~---~g~ 551 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQD--SEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYE----GFCSNTINQIYRSS---KGQ 551 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEEC--TTCCEEEEESSSC-EEEECTTCCEEE-EECTTT----TCSCSCEEEEEECT---TSC
T ss_pred ecccCcccccccceeEEEEEc--CCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCC----CCCCCeeEEEEECC---CCC
Confidence 322211 2344444443 7777665543344 777887655432 221110 11245688998877 776
Q ss_pred EEEEeCCCCcEEEEEeccc
Q 017773 343 TLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 343 ~l~s~~~dg~i~iw~~~~~ 361 (366)
+.++.. +|.|..|+.+++
T Consensus 552 lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 552 MWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp EEEEET-TEEEEESCTTTC
T ss_pred EEEEEC-CCceEEECCCCC
Confidence 666554 675477776554
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.91 E-value=2.3e-06 Score=77.60 Aligned_cols=283 Identities=13% Similarity=0.094 Sum_probs=157.8
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF 135 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 135 (366)
.+++++.++.|.-+|..+++............. ...+ ...-..++.. +..++.++.|+.|..+|..+++.+.
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~---~~~~-~~~~~g~a~~----~~~v~~~t~dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDI---RPCC-DVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVW 141 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTC---CCSS-CSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCccc---cccc-ccCCCccEEE----CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 444445544588888888776542211111000 0000 0000112222 4567778889999999999999887
Q ss_pred eeecCCCC---cee-eEEecc---CCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCC--------------
Q 017773 136 ERDEHGGR---RVW-SVDYSK---GDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSAS-------------- 188 (366)
Q Consensus 136 ~~~~~~~~---~v~-~i~~~~---~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~-------------- 188 (366)
........ .+. .-.... +++.++++++ .++.|.-+|.. +++.+........
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~--tG~~~W~~~~~~~~~~p~~~~~~~~~g 219 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD--TGEEIWMRPFVEGHMGRLNGKDSTVTG 219 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT--TCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC--CCCEEeecCCCccccccccCccccccc
Confidence 66543210 111 111111 1232335554 37899999998 7777665542100
Q ss_pred -------------------------CCCeEEEEEcCCCCcEEEEEec--------------------C----CeEEEEec
Q 017773 189 -------------------------RSAVCCVEFHPFGSSLVAAGCA--------------------D----KKAYAYDV 219 (366)
Q Consensus 189 -------------------------~~~i~~~~~~~~~~~~l~~~~~--------------------d----~~i~i~d~ 219 (366)
...-..++++|.. .+++.+.. | +.|..+|.
T Consensus 220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred ccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 0000235666765 46665542 2 58999999
Q ss_pred CCCCCCeeEeec--cc--------CcEEEEEE--cCC---CEEEEEeCCCcEEEEecCCCceeeeeecccc---------
Q 017773 220 RKMVDPVLVFDG--HR--------KTVTYIRF--LDV---DTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN--------- 275 (366)
Q Consensus 220 ~~~~~~~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------- 275 (366)
+++ +.+-.++. |. .++. +.. .++ ..++.++.+|.++++|.++++++..+.....
T Consensus 299 ~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 376 (582)
T 1flg_A 299 SSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL 376 (582)
T ss_dssp TTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred CCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence 988 45444432 21 2222 222 145 3788899999999999999988876553310
Q ss_pred ----ee-----------------ee-------------EEEEEecCCCeEEEec--------------------------
Q 017773 276 ----NR-----------------NF-------------VGLSVWRHGGLLGCGS-------------------------- 295 (366)
Q Consensus 276 ----~~-----------------~~-------------~~~~~~~~~~~l~~~~-------------------------- 295 (366)
++ .. -..+++|+..++++..
T Consensus 377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 456 (582)
T 1flg_A 377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR 456 (582)
T ss_dssp TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence 00 00 0112335544444321
Q ss_pred -------CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCC
Q 017773 296 -------ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPL 363 (366)
Q Consensus 296 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l 363 (366)
.+|.|..||+.+++.++...... ++..-.... .+.+++.++.||.|+.||.+++++
T Consensus 457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~t---agglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLAT---AGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEEE---TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceEe---CCCEEEEECCCCcEEEEECCCCCE
Confidence 36889999999999998875421 121111112 334677799999999999887653
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.91 E-value=5.4e-06 Score=68.97 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=130.9
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC--
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD-- 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-- 120 (366)
.....++|+++|+++++-..++.|..|+...... .... .......+++.++ ++++++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----~~~~----------~~~~p~gia~~~d--G~l~vad~~~~~ 94 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----IHAT----------VEGKVSGLAFTSN--GDLVATGWNADS 94 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----EEEE----------CSSEEEEEEECTT--SCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----EEEe----------CCCCceeEEEcCC--CcEEEEeccCCc
Confidence 4578899999998777766788999988764211 1111 1134788999998 8866655332
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc-eeEee-------cCCCCCCCe
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK-CVSTV-------QPSASRSAV 192 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~-~~~~~-------~~~~~~~~i 192 (366)
..|..++..+++...............++..+. ..++++-..++.|..+|.. .++ .+... .........
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~--~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVV--QPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETT--TTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCC--CCcEeEEEECCccccccccCCCCcC
Confidence 247777877776543332222213345554443 3443555568889999876 332 11110 111112245
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC--eeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceee-
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP--VLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIR- 268 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~- 268 (366)
..+ +|++..++++-...+.|+.||+...... ...+.. ......+++. +++++++....+.|.++|.. ++...
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 556 7777556666667889999998752111 122211 1234567887 88877777778899999975 55422
Q ss_pred -eeecccceeeeEEEEEe---cCCCeEEEecC
Q 017773 269 -TYKGHVNNRNFVGLSVW---RHGGLLGCGSE 296 (366)
Q Consensus 269 -~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 296 (366)
.+........ ++++. |+++.|+..+.
T Consensus 248 ~~~~~~~~~p~--~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 248 AQAEQGVIGST--AVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECGGGTCTTEE--EEEECCSTTTTTEEEEEEC
T ss_pred eecccccCCce--EEEEecccCCCCEEEEECC
Confidence 2322212223 34444 56666655443
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.89 E-value=5.9e-06 Score=74.93 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=144.7
Q ss_pred CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc-EEEEEc------CCCcEEEE
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR-VLGSGD------YDGVVMEY 126 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~------~dg~i~iw 126 (366)
+..++.++.|+.|..+|..+++........ .+.. . ......++ + .....+++ .+++++ .++.|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~-~~~~--~-~~~~~sP~--v-~~~~~~G~~~v~vg~~~~e~~~~g~v~al 189 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFA-DHGA--G-YTMTGAPT--I-VKDGKTGKVLLIHGSSGDEFGVVGRLFAR 189 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECS-CGGG--T-CBCCSCCE--E-EECTTTCCEEEEECCBCGGGCCBCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCC-CCCc--C-cccccCCE--E-eCCCcCCcEEEEEeccccccCCCCEEEEE
Confidence 456777788999999999888765422110 0000 0 00001111 1 11100133 555654 37899999
Q ss_pred eCCCCceeEeeecCCC-----------------C----------------------ce-eeEEeccCCCceEEEecC---
Q 017773 127 DLEKKVPIFERDEHGG-----------------R----------------------RV-WSVDYSKGDPVLGASGSD--- 163 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~-----------------~----------------------~v-~~i~~~~~~~~l~~~~~~--- 163 (366)
|..+++.+........ . .+ ..+++.|....+ +.+..
T Consensus 190 D~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~v-yv~~gn~~ 268 (582)
T 1flg_A 190 DPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTI-IVGAGNPG 268 (582)
T ss_dssp CTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEE-EEEECCBS
T ss_pred ECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEE-EEeCCCCC
Confidence 9999987765543210 0 00 124555655655 44332
Q ss_pred -----------------C----CcEEEeeCCCCCCceeEeecCCCCC--------CCeEEEEEc-CCCC--cEEEEEecC
Q 017773 164 -----------------D----GTMQMWDPRCDGGKCVSTVQPSASR--------SAVCCVEFH-PFGS--SLVAAGCAD 211 (366)
Q Consensus 164 -----------------d----g~v~~~d~~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~--~~l~~~~~d 211 (366)
| +.|.-+|.. +++.+..++...|. .++. +... .+|. ..++.++.+
T Consensus 269 ~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~--TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~ 345 (582)
T 1flg_A 269 PWNTWARTAKGGNPHDYDSLYTSGQVGVDPS--SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRN 345 (582)
T ss_dssp SSCGGGGSCTTSCSTTCCCTTCSEEEEECTT--TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTT
T ss_pred cccCcccccCCCcccccCCcccceEEEEeCC--CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCC
Confidence 2 579999998 88888887654332 1221 2221 4553 378889999
Q ss_pred CeEEEEecCCCCCCeeEeeccc-------------CcE--------------------------------EEEEEc-CCC
Q 017773 212 KKAYAYDVRKMVDPVLVFDGHR-------------KTV--------------------------------TYIRFL-DVD 245 (366)
Q Consensus 212 ~~i~i~d~~~~~~~~~~~~~~~-------------~~v--------------------------------~~~~~~-~~~ 245 (366)
|.++++|.+++ +.+..+.... .++ ..++++ +..
T Consensus 346 G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 424 (582)
T 1flg_A 346 GFFYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG 424 (582)
T ss_dssp SEEEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC
T ss_pred ceEEEEECCCC-CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC
Confidence 99999999887 4443332211 000 012333 222
Q ss_pred EEEEEe---------------------------------CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE
Q 017773 246 TLVTAG---------------------------------TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 246 ~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
++++.. .+|.|..||+.+++.+-+..... +.....+. ..+.+++
T Consensus 425 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~--tagglvf 501 (582)
T 1flg_A 425 LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLA--TAGNLVF 501 (582)
T ss_dssp CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEE--ETTTEEE
T ss_pred EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceE--eCCCEEE
Confidence 333221 36789999999999887766432 22222222 3567788
Q ss_pred EecCCCeEEEEEeecCceEEEEecc
Q 017773 293 CGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.|+.||.++.||.++|+.++.++.+
T Consensus 502 ~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 502 TGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECS
T ss_pred EECCCCcEEEEECCCCCEEEEecCC
Confidence 8999999999999999999998754
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.87 E-value=1.1e-05 Score=67.34 Aligned_cols=236 Identities=8% Similarity=-0.072 Sum_probs=143.9
Q ss_pred cccccceeeeeecCCCc--eeeecCCCCccCCCceEEEEECCCC-CEEEEeecCCeEEEEEceecccccceeeeecCcee
Q 017773 13 ETTNERARCEWDFNLRT--TVSSSSSPNAAVSDSIGVIEFDPSD-SVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV 89 (366)
Q Consensus 13 ~~~~~~~~~~w~~~~~~--~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 89 (366)
..+....+...++++.. ...... ......+++|++.+ .++++-...+.|..++.......... ...+
T Consensus 8 l~~~~~~I~~i~l~~~~~~~~~~~~-----~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~~~---- 77 (318)
T 3sov_A 8 LYANRRDLRLVDATNGKENATIVVG-----GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSG---- 77 (318)
T ss_dssp EEECEEEEEEEETTCTTSCCEEEEE-----EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-EEEC----
T ss_pred EEEccCeEEEEECCCCceEEEEEec-----CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-EcCC----
Confidence 33444556666676653 111000 12346789999854 45555455678988888765321100 1111
Q ss_pred ceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec-CCCcEE
Q 017773 90 CDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS-DDGTMQ 168 (366)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~dg~v~ 168 (366)
-.....+++.+. .+.++++-...+.|.+++++............. ....+++.|.+..++.+-. ..+.|.
T Consensus 78 -------l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~-~P~giavdp~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 78 -------LLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD-QPRAIALDPSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp -------CSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred -------CCCccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCCEEE
Confidence 123667888875 256666666778999999876543333323333 6789999998777745542 357888
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEE
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLV 248 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 248 (366)
..++. +.....+.. ..-.....++++|+++.++.+=...+.|..+|+... ...............+++..+.++.
T Consensus 149 r~~~d---G~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~~~lyw 223 (318)
T 3sov_A 149 RAGMD---GSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFEDILYW 223 (318)
T ss_dssp EEETT---SCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEETTEEEE
T ss_pred EEEcC---CCCeEEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeCCEEEE
Confidence 88876 332222211 122367899999977566666667889999998764 2333333233455677776556667
Q ss_pred EEeCCCcEEEEecCCCceeeeeec
Q 017773 249 TAGTDGCLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 249 ~~~~d~~i~iwd~~~~~~~~~~~~ 272 (366)
+-...+.|..++..+++....+..
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEEC
T ss_pred EecCCCeEEEEECCCCCceEEEeC
Confidence 766778899999888876666553
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.86 E-value=3.2e-05 Score=66.79 Aligned_cols=216 Identities=8% Similarity=-0.060 Sum_probs=134.8
Q ss_pred CCceEEEEECCCCCEEEEe-ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVFATG-GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...+..++|++.+..|..+ ...+.|+.+++...........+... .......+++.+. .+.++++-...
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---------~~~~p~glavD~~-~~~lY~~d~~~ 180 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------DIQAPDGLAVDWI-HSNIYWTDSVL 180 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---------SCSCEEEEEEETT-TTEEEEEETTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---------CCCCcccEEEEec-CCceEEEECCC
Confidence 5568899999865555444 45678888887653211101111111 1134678899874 15666666778
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC-CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD-DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|.+.+++.......+..... ....|++.|.+..++.+-.. .+.|...++. .......+. ..-.....|+++|
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~-~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~--~~l~~P~glavd~ 255 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT--ENIQWPNGITLDL 255 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSC-CEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEEC--SSCSCEEEEEEET
T ss_pred CeEEEEeCCCCceEEEEeCCCC-CcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEE--CCCCceEEEEEEe
Confidence 8999999986654444433333 67899999987777555433 4788888887 322222222 2224789999998
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
+++.++++-...+.|..+|+... ........ .-.....+++..+.++++-...+.|..+|..+++.+..+...
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330 (400)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECS
T ss_pred CCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecC
Confidence 87556666566789999998764 33333322 123445676655566777777788999998888777666543
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.86 E-value=1.4e-05 Score=66.40 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=131.8
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC-CC-cEEEeeCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD-DG-TMQMWDPRCDG 176 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-dg-~v~~~d~~~~~ 176 (366)
....++|+++ ++++++-..++.|..||.+.. ....+... . .+..+++.++++.+ ++... ++ .|..+|.. +
T Consensus 33 ~pegia~~~~--g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~-~-~p~gia~~~dG~l~-vad~~~~~~~v~~~d~~--~ 104 (306)
T 2p4o_A 33 FLENLASAPD--GTIFVTNHEVGEIVSITPDGN-QQIHATVE-G-KVSGLAFTSNGDLV-ATGWNADSIPVVSLVKS--D 104 (306)
T ss_dssp CEEEEEECTT--SCEEEEETTTTEEEEECTTCC-EEEEEECS-S-EEEEEEECTTSCEE-EEEECTTSCEEEEEECT--T
T ss_pred CcceEEECCC--CCEEEEeCCCCeEEEECCCCc-eEEEEeCC-C-CceeEEEcCCCcEE-EEeccCCcceEEEEcCC--C
Confidence 4678999998 888888778899999998754 33333322 2 78899999998854 44432 22 46667766 4
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee---------cccCcEEEEEEc-CCCE
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD---------GHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~~-~~~~ 246 (366)
++........ .......++..+.+ ..+++-..++.|+.+|.......+.... ..-...+.+ + +++.
T Consensus 105 g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 5543333221 12244566666654 5555555688999999765310111000 111234455 4 5554
Q ss_pred E-EEEeCCCcEEEEecCC-Cce--eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEeccccccc
Q 017773 247 L-VTAGTDGCLKLWNVND-SRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAA 322 (366)
Q Consensus 247 l-~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 322 (366)
| ++-...+.|..+++.. ++. ...+... .....+++. ++|++.++....+.|.++|.. ++........
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd--~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----- 251 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFD--VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----- 251 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEB--TTCCEEEECBTTCCEEEECTT-CCEEEEECGG-----
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEEC--CCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-----
Confidence 4 5555678999999874 321 1112111 123345555 899888887778899999864 5543221111
Q ss_pred CCCCceeeEEEee---ccCCCceEEEEeC
Q 017773 323 GSERGFVSSVCWR---RVGEDECTLVAGG 348 (366)
Q Consensus 323 ~~~~~~v~~~~~~---~~~~~~~~l~s~~ 348 (366)
......++++|. | ++..|+.++
T Consensus 252 -~~~~~p~~~a~~g~~~---d~~~LyVt~ 276 (306)
T 2p4o_A 252 -QGVIGSTAVAFGQTEG---DCTAIYVVT 276 (306)
T ss_dssp -GTCTTEEEEEECCSTT---TTTEEEEEE
T ss_pred -cccCCceEEEEecccC---CCCEEEEEC
Confidence 112457899998 7 654554443
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.85 E-value=1.4e-06 Score=81.76 Aligned_cols=196 Identities=9% Similarity=-0.011 Sum_probs=111.1
Q ss_pred ceeEEEEe-cCCCCcEEEEEcC-C----CcEEEEeCCCC-ceeEe-eecCCCCceeeEEeccCCCceEEEecCC----Cc
Q 017773 99 KLSSLKWK-PGTSGRVLGSGDY-D----GVVMEYDLEKK-VPIFE-RDEHGGRRVWSVDYSKGDPVLGASGSDD----GT 166 (366)
Q Consensus 99 ~v~~~~~~-~~~~~~~l~~~~~-d----g~i~iw~~~~~-~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~~d----g~ 166 (366)
.+...+|+ |+ |++|+-+.. + ..|+++|+.++ +.+.. +. . ....+.|+|+++.++++...+ ..
T Consensus 175 ~~~~~~~S~PD--G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~-~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPE--HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---G-TNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTT--TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---E-ECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCC--CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---C-ceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 47789999 99 988775432 2 35999999988 63211 11 1 234789999999885654322 25
Q ss_pred EEEeeCCCCCCc--eeEeecCCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEEecCCCCCCe--eEe-ecccCcEEEE
Q 017773 167 MQMWDPRCDGGK--CVSTVQPSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAYDVRKMVDPV--LVF-DGHRKTVTYI 239 (366)
Q Consensus 167 v~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~--~~~-~~~~~~v~~~ 239 (366)
|+++++. +.. ....+... .......+.|+|+|..++++.. ....|+++|+.++.... ..+ .........+
T Consensus 249 v~~~~lg--t~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 249 VWRHVMG--KLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEETT--SCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred EEEEECC--CCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 8888887 332 22333222 2235678899999944444432 23468889988752122 333 3344566777
Q ss_pred EEcCCCEEE-EEeCC----CcEEEEecCCCceeee-eecccceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 240 RFLDVDTLV-TAGTD----GCLKLWNVNDSRVIRT-YKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 240 ~~~~~~~l~-~~~~d----~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
.|+.++.|+ ....+ ..|..+|+.++..... +..+...+....+++. .+.++++...++..++|-
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 766455554 44333 2566777664322223 3334433333445532 344556666677544443
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.84 E-value=2.7e-05 Score=64.98 Aligned_cols=232 Identities=10% Similarity=-0.009 Sum_probs=137.7
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCC----C
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEK----K 131 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~ 131 (366)
+|+.+.. ..|+..++....... .... ......++|++. ++.++++-..++.|..++++. .
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~~~-----------~~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~ 66 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LIPN-----------LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVS 66 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EECS-----------CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC-------
T ss_pred EEEEECC-CeEEEEECCCcceEe---hhcC-----------CCceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCc
Confidence 3444433 468888877644322 1111 134788999986 245556666678999999876 2
Q ss_pred ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC
Q 017773 132 VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD 211 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 211 (366)
.....+..... ....+++.+.++.+.++-...+.|.++++. .......+. ........++++|.++.++.+....
T Consensus 67 ~~~~~~~~~~~-~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 67 SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp -CEEEECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSS
T ss_pred ccEEEEeCCCC-CcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCC
Confidence 22222222222 567899987677775666778899999987 332222222 1223788999999764555555443
Q ss_pred -CeEEEEecCCCCCCeeEe-ecccCcEEEEEEc-CCCEEE-EEeCCCcEEEEecCCCceeeeee-c--ccceeeeEEEEE
Q 017773 212 -KKAYAYDVRKMVDPVLVF-DGHRKTVTYIRFL-DVDTLV-TAGTDGCLKLWNVNDSRVIRTYK-G--HVNNRNFVGLSV 284 (366)
Q Consensus 212 -~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~-~--~~~~~~~~~~~~ 284 (366)
+.|..+++... ....+ ...-...+.++++ ++..|+ +-...+.|..+|+... ....+. . .-.....+++.
T Consensus 142 ~~~I~~~~~dG~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~- 217 (316)
T 1ijq_A 142 PAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF- 217 (316)
T ss_dssp SCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-
T ss_pred CCeEEEEcCCCC--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-
Confidence 78988888653 33332 2233457889998 555554 4455678999998643 223332 1 11122344443
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.+.++++-...+.|..++..+++.+..+
T Consensus 218 --~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 218 --EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred --CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 4666667777888999987666654443
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.9e-05 Score=74.70 Aligned_cols=287 Identities=14% Similarity=0.089 Sum_probs=161.9
Q ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCcee-ceeeeecCCceeEEEEecCCCCcEEEEEcC
Q 017773 41 VSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKV-CDYYICTPAKLSSLKWKPGTSGRVLGSGDY 119 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 119 (366)
....|.++...++|. |..|+.++-|..++........ .. +... ..........|.++...++ +. |..|+.
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~v~~i~~d~~--g~-lWigt~ 381 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT----WS-YSPTQMNESSLSNKVVSSVCDDGQ--GK-LWIGTD 381 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE----EC-----CCCSSCCSSSCEEEEEECTT--SC-EEEEEB
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee----ec-cCccccccCCCCCcceEEEEEcCC--CC-EEEEeC
Confidence 456799999999886 5566666668888876533211 10 0000 0000001245888888776 65 445665
Q ss_pred CCcEEEEeCCCCceeEeee--cCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecC-CCCCCCeEEEE
Q 017773 120 DGVVMEYDLEKKVPIFERD--EHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQP-SASRSAVCCVE 196 (366)
Q Consensus 120 dg~i~iw~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~ 196 (366)
++-|..++..++....... ......|.++...+++.. ..|+.++-+..+|.. +++. ..+.. ......|.++.
T Consensus 382 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l--Wigt~~~Gl~~~~~~--~~~~-~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 382 GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL--WFGTYLGNISYYNTR--LKKF-QIIELEKNELLDVRVFY 456 (781)
T ss_dssp SSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE--EEEETTEEEEEECSS--SCEE-EECCSTTTCCCCEEEEE
T ss_pred CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE--EEEeccCCEEEEcCC--CCcE-EEeccCCCCCCeEEEEE
Confidence 5668889987553322110 112237889988776654 446666678899876 4433 33321 12335799999
Q ss_pred EcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc-----cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeee
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH-----RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTY 270 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 270 (366)
..++| . +..|+. +-+..||..+. +........ ...|.++... ++. |..|+.++-+..||..+++. ..+
T Consensus 457 ~d~~g-~-lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~ 530 (781)
T 3v9f_A 457 EDKNK-K-IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLV-RKF 530 (781)
T ss_dssp ECTTS-E-EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEE-EEE
T ss_pred ECCCC-C-EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeE-EEc
Confidence 99887 4 444545 56899998765 222222111 3568888887 554 55555544477888766543 233
Q ss_pred ecc----cceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 271 KGH----VNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 271 ~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
... ...+..+.. .++|.+.++.. +|.|..||..+++.. .+... . .-....|.++...+ +|.+.++
T Consensus 531 ~~~~~l~~~~i~~i~~--d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~--~--gl~~~~i~~i~~d~---~g~lW~~ 599 (781)
T 3v9f_A 531 NQYEGFCSNTINQIYR--SSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRK--E--GLPNTHIRAISEDK---NGNIWAS 599 (781)
T ss_dssp CTTTTCSCSCEEEEEE--CTTSCEEEEET-TEEEEESCTTTCCCE-EECGG--G--TCSCCCCCEEEECS---SSCEEEE
T ss_pred cCCCCCCCCeeEEEEE--CCCCCEEEEEC-CCceEEECCCCCcEE-Ecccc--C--CCCCceEEEEEECC---CCCEEEE
Confidence 211 223444443 37777665544 665588887766432 22111 0 11124577888877 6666555
Q ss_pred eCCCCcEEEEEecc
Q 017773 347 GGSDGLLHVFVGKK 360 (366)
Q Consensus 347 ~~~dg~i~iw~~~~ 360 (366)
+.+| |..|+.++
T Consensus 600 -t~~G-l~~~~~~~ 611 (781)
T 3v9f_A 600 -TNTG-ISCYITSK 611 (781)
T ss_dssp -CSSC-EEEEETTT
T ss_pred -cCCc-eEEEECCC
Confidence 4555 55566543
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.83 E-value=3.2e-05 Score=64.58 Aligned_cols=233 Identities=7% Similarity=-0.062 Sum_probs=139.4
Q ss_pred ceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEE-EEeecCCeEEEEEceecccccceeeeecCceeceeeeec
Q 017773 18 RARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVF-ATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICT 96 (366)
Q Consensus 18 ~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (366)
..+...++++........ ....+..++|++.+..| ++-...+.|..+++...........+... .
T Consensus 10 ~~I~~i~~~~~~~~~~~~-----~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~---------~ 75 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------D 75 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------S
T ss_pred CeEEEEECCCcceEehhc-----CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---------C
Confidence 334555666554332221 24567899999866544 44445688999988752100000011110 0
Q ss_pred CCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEEeeCCCC
Q 017773 97 PAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQMWDPRCD 175 (366)
Q Consensus 97 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~~d~~~~ 175 (366)
-.....+++.+. .+.++++-...+.|.+.+++.......+..... ....+++.|.+..++++.... +.|...++.
T Consensus 76 ~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-- 151 (316)
T 1ijq_A 76 IQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-- 151 (316)
T ss_dssp CSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred CCCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCC-CcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence 123578899875 155556666788999999876543333332223 678999999888775555443 788888876
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEcCCCEEEEEeCC
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFLDVDTLVTAGTD 253 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d 253 (366)
+.....+.. ..-.....++++|+++.++++-...+.|..+|+... ........ .-.....+++..+.++++-...
T Consensus 152 -G~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~ 228 (316)
T 1ijq_A 152 -GVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN 228 (316)
T ss_dssp -SCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTT
T ss_pred -CCCeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEECCEEEEEECCC
Confidence 333333321 122378899999987566666667789999999754 22222221 1234567777655666666677
Q ss_pred CcEEEEecCCCceeeeee
Q 017773 254 GCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~ 271 (366)
+.|..++..+++.+..+.
T Consensus 229 ~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CeEEEEeCCCCcceEEEe
Confidence 889999987777666554
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.80 E-value=2e-05 Score=62.88 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=123.5
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
..+..++|+|+ .+.++++...++.|...|+. ++.+..+..........|++.+++.++ ++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~-vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFV-ISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEE-EEETTTTEEEEEEECTTCC
T ss_pred cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEE-EEECCCCcEEEEEcCCCCe
Confidence 46999999997 24455567778899999998 777777654333378899998877654 5655678899998873221
Q ss_pred -ceeEeecC----CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC--CCCCeeEee-------cccCcEEEEEEc-
Q 017773 178 -KCVSTVQP----SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK--MVDPVLVFD-------GHRKTVTYIRFL- 242 (366)
Q Consensus 178 -~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~-------~~~~~v~~~~~~- 242 (366)
..+..... .........++|+|.+..+++ +.......+|.++. ....+.... .+...+..++++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 12233321 123456789999999844444 44444444444431 111222221 123356788887
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCceeeeeeccc---------ceeeeEEEEEecCCCeEEEecCCCeEEEEE
Q 017773 243 -DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV---------NNRNFVGLSVWRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 243 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 304 (366)
.+.+++.+.....+..+|.. ++.+..+.-.. .....+++. ++|++.++ ++-+.++.+.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d--~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD--ASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC--TTCCEEEE-ETTTEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC--CCCCEEEE-cCCceEEEEE
Confidence 66677777788889999965 55555544221 123456666 99985555 5666666554
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.77 E-value=4.6e-05 Score=63.52 Aligned_cols=236 Identities=8% Similarity=-0.002 Sum_probs=139.9
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee-
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI- 134 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~- 134 (366)
+|+.+. ...|+..+++...... .....+. .....++|.+. ++.++++-...+.|..++++.+...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~-~~~~~~~-----------~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~ 71 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENA-TIVVGGL-----------EDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQ 71 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCC-EEEEEEE-----------EEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCC
T ss_pred EEEEEc-cCeEEEEECCCCceEE-EEEecCC-----------CccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceE
Confidence 344443 4578888887653211 1111111 23678999986 2556666667789999998876422
Q ss_pred EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCe
Q 017773 135 FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKK 213 (366)
Q Consensus 135 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~ 213 (366)
..+...-. ....+++.+.+..++++-...+.|.++++. ......... ........++++|.++.++.+-. ..+.
T Consensus 72 ~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~--~~~~~P~giavdp~~g~ly~td~~~~~~ 146 (318)
T 3sov_A 72 NVVVSGLL-SPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPK 146 (318)
T ss_dssp EEEEECCS-CCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEC--SSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred EEEcCCCC-CccEEEEEcCCCeEEEEECCCCEEEEEECC--CCcEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence 12222222 566888887777776776777899999987 322222222 22347889999997645554432 3578
Q ss_pred EEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE-EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeE
Q 017773 214 AYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV-TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLL 291 (366)
Q Consensus 214 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 291 (366)
|...++... .........-...+.++++ ++..|+ +-+..+.|..+|+........+.........+++. .+.++
T Consensus 147 I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~---~~~ly 222 (318)
T 3sov_A 147 IERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF---EDILY 222 (318)
T ss_dssp EEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE---TTEEE
T ss_pred EEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe---CCEEE
Confidence 998888754 2222222223456889998 555554 44566789999986432222222122222344443 34556
Q ss_pred EEecCCCeEEEEEeecCceEEEE
Q 017773 292 GCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 292 ~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.+-...+.|..++..+++....+
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEE
T ss_pred EEecCCCeEEEEECCCCCceEEE
Confidence 66667788999998777665444
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.73 E-value=8.5e-05 Score=64.13 Aligned_cols=234 Identities=10% Similarity=-0.021 Sum_probs=139.5
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK---- 131 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---- 131 (366)
+|+.+. ...|+..++....... ... ....+..++|++. ++.++++-...+.|..+++...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~---~~~-----------~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS---LIP-----------NLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVS 148 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE---EEC-----------SCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------C
T ss_pred eeEEec-cceeEEEccCCcceeE---ecc-----------ccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCC
Confidence 455444 4678888876543221 111 1235889999986 2455555566788999998752
Q ss_pred ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-
Q 017773 132 VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA- 210 (366)
Q Consensus 132 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~- 210 (366)
.....+..... ....+++.+.++.|.++-...+.|.+.++. .......+. ........++++|.++.++.+-..
T Consensus 149 ~~~~~~~~~~~-~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 149 SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp CCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEE--CSSCCEEEEEEETTTTEEEEEECSS
T ss_pred cceEEEeCCCC-CcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEe--CCCCCcceEEEecccCeEEEEeCCC
Confidence 22222322222 678899988777776777778899999987 333333332 223368899999976455555423
Q ss_pred CCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCCCceeeeeecc--cceeeeEEEEEec
Q 017773 211 DKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVNDSRVIRTYKGH--VNNRNFVGLSVWR 286 (366)
Q Consensus 211 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~ 286 (366)
.+.|...++... .........-...+.|+++ ++..|+.+ ...+.|..+|+........+... -.....+++ .
T Consensus 224 ~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v---~ 299 (400)
T 3p5b_L 224 PAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV---F 299 (400)
T ss_dssp SCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE---E
T ss_pred CCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE---e
Confidence 478999988764 2333333333567889998 55555544 45678999998654332222221 111223333 2
Q ss_pred CCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 287 HGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 287 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
.+.++.+-...+.|..+|..+|+.+..+
T Consensus 300 ~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 300 EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 4456666667788999987777655444
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=8.3e-06 Score=76.63 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=115.7
Q ss_pred ceEEEEEC-CCCCEEEEeec-C----CeEEEEEceec-ccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEE
Q 017773 44 SIGVIEFD-PSDSVFATGGI-A----RKIRIYNIKSV-LVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGS 116 (366)
Q Consensus 44 ~i~~~~~s-~~~~~l~t~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 116 (366)
.+...+|| |||++||.+.. + ..|+++|+.++ +.... .+. .....++|+|+ ++.|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~-------------~~~~~~~WspD--g~~l~y 237 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS-------------GTNGEIVWGPD--HTSLFY 237 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE-------------EECSCCEECSS--TTEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc-------------CceeeEEEecC--CCEEEE
Confidence 68899999 99998886543 2 25999999887 42210 000 11356889999 877776
Q ss_pred EcCC-----CcEEEEeCCCCce--eEeeecCCCCceeeEEeccCCCceEEEecC--CCcEEEeeCCCCCCce-eEeecCC
Q 017773 117 GDYD-----GVVMEYDLEKKVP--IFERDEHGGRRVWSVDYSKGDPVLGASGSD--DGTMQMWDPRCDGGKC-VSTVQPS 186 (366)
Q Consensus 117 ~~~d-----g~i~iw~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--dg~v~~~d~~~~~~~~-~~~~~~~ 186 (366)
...+ ..|.++++.++.. ...+..........+.|+|++++|+++... ...|.++|+.....+. +..+..
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~- 316 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP- 316 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-
Confidence 6554 3688888877642 233332222246688999999998666543 3458888887321222 133321
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEecC----CeEEEEecCCCCCCeeEeecccC--cEEEEEEcCCCEEEEEeCCCc--EEE
Q 017773 187 ASRSAVCCVEFHPFGSSLVAAGCAD----KKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDVDTLVTAGTDGC--LKL 258 (366)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~--i~i 258 (366)
.......++.|+. |..+++....+ ..|..+|+.+.......+..+.. .+..+.+..+.++++...++. |.+
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence 2233555666554 43555555443 36777787642122220223333 345555555556667777775 455
Q ss_pred Eec
Q 017773 259 WNV 261 (366)
Q Consensus 259 wd~ 261 (366)
+|+
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.70 E-value=0.00015 Score=67.91 Aligned_cols=214 Identities=7% Similarity=-0.042 Sum_probs=129.1
Q ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
...+..++|++.+. ++++-...+.|+.+++...........+... .......|++.+. .++++++-...
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---------~l~~P~GLAvD~~-~~~LY~tD~~~ 492 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------DIQAPDGLAVDWI-HSNIYWTDSVL 492 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------SCSCCCEEEEETT-TTEEEEEETTT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---------CCCCcceeeeeec-CCcEEEEecCC
Confidence 45678999998554 4445455678888887653211111111111 1134678999876 13566666678
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|.+.+++.......+..... ....|++.|.+..|+++-... +.|...++. +.....+.. ........|++++
T Consensus 493 ~~I~v~~ldG~~~~~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d---G~~~~~lv~-~~l~~P~GLavD~ 567 (791)
T 3m0c_C 493 GTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIYSLVT-ENIQWPNGITLDL 567 (791)
T ss_dssp TEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCCEEEEEC-SSCSCEEEEEEET
T ss_pred CeEEEEeCCCCeEEEEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEecC---CCceEEEEe-CCCCCceEEEEec
Confidence 8999999976554333333333 688999999877775554333 678888887 333333321 2234789999998
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecc--cCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH--RKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
.++.++++=...+.|..+++... ......... -.....|++..+.++++-...+.|...|..+++.+..+.
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 77556555556778999998765 333333321 123456666555566666677888888877775555443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=5.9e-05 Score=60.16 Aligned_cols=209 Identities=10% Similarity=0.063 Sum_probs=132.8
Q ss_pred eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE
Q 017773 137 RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216 (366)
Q Consensus 137 ~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 216 (366)
+.+-.. .+..++|+|++..|+++...++.|...|.. ++.+..+...+ ......+++.+++ .++++.-.++.+.+
T Consensus 22 l~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 22 IAGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDF-VKDLETIEYIGDN-QFVISDERDYAIYV 95 (255)
T ss_dssp CTTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSS-CSSEEEEEECSTT-EEEEEETTTTEEEE
T ss_pred CCCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCC-CCChHHeEEeCCC-EEEEEECCCCcEEE
Confidence 334444 799999999988887778888889998886 67777775533 2478889999887 66666667789999
Q ss_pred EecCCCCC--CeeEee------cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCC---Cceeeeeec-------cccee
Q 017773 217 YDVRKMVD--PVLVFD------GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVND---SRVIRTYKG-------HVNNR 277 (366)
Q Consensus 217 ~d~~~~~~--~~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-------~~~~~ 277 (366)
+++..... .+.... ..+.....++|. .++.|+++.......+|.+.. ...+..+.. +....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98876532 112221 234456899998 666777776665556665541 111222211 12234
Q ss_pred eeEEEEEec-CCCeEEEecCCCeEEEEEeecCceEEEEecccc-cccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 278 NFVGLSVWR-HGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV-TAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 278 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
..+++. | .+++++.......|.++|.. ++.+..+.+... ..+..--..--+|+|.| +|+..++ ++.+.++.
T Consensus 176 S~l~~d--p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~---~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 176 SGAEFN--QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA---SGNIYIV-SEPNRFYR 248 (255)
T ss_dssp CEEEEE--TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT---TCCEEEE-ETTTEEEE
T ss_pred eeEEEc--CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC---CCCEEEE-cCCceEEE
Confidence 455555 6 45667777778889999965 667766655421 01111123568999999 8875555 56665655
Q ss_pred EEe
Q 017773 356 FVG 358 (366)
Q Consensus 356 w~~ 358 (366)
+.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=1.5e-05 Score=69.51 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=95.5
Q ss_pred ceEEEEECC-CCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcC-CC
Q 017773 44 SIGVIEFDP-SDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDY-DG 121 (366)
Q Consensus 44 ~i~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg 121 (366)
....++++| ++..|..+...+.|+.+|........ +.. .......++|+++ ++.|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~----------~~~~P~~ia~d~~--G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYS----------GLSKVRTICWTHE--ADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EEC----------CCSCEEEEEECTT--SSEEEEEECCSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----Eec----------CCCCcceEEEeCC--CCEEEEEeCCCC
Confidence 457889998 45556666555788888876543211 111 1234788999998 885555543 22
Q ss_pred ----cEEEEeCCCCcee--EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 122 ----VVMEYDLEKKVPI--FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 122 ----~i~iw~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
.+...+.. +... ..+... . ....++++|++..++++-..++.|..++.. .......... ........+
T Consensus 202 ~~~~~v~~~~~~-g~~~~~~~l~~~-~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~--~~~~~~~~~~-~~~~~P~gi 275 (430)
T 3tc9_A 202 NDRPNNYILTRE-SGFKVITELTKG-Q-NCNGAETHPINGELYFNSWNAGQVFRYDFT--TQETTPLFTI-QDSGWEFHI 275 (430)
T ss_dssp TTSEEEEEEEGG-GTSCSEEEEEEC-S-SCCCEEECTTTCCEEEEETTTTEEEEEETT--TTEEEEEEEC-SSSSCCEEE
T ss_pred cccceEEEEeCC-CceeeeeeeccC-C-CceEEEEeCCCCEEEEEECCCCEEEEEECC--CCcEEEEEEc-CCCCcceeE
Confidence 23334433 2221 222221 1 567889999555564666678899999987 4433222222 122357899
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCC
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
+++|+|..++++-...+.|+.++...
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999943666666788999988764
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.67 E-value=2.4e-06 Score=79.10 Aligned_cols=244 Identities=10% Similarity=0.075 Sum_probs=131.4
Q ss_pred eEEEEec-CCCCcEEEEEcCCC-----------cEEEEeCCCCceeE--eeecCCCCceeeEEeccCCCceEEEec-CCC
Q 017773 101 SSLKWKP-GTSGRVLGSGDYDG-----------VVMEYDLEKKVPIF--ERDEHGGRRVWSVDYSKGDPVLGASGS-DDG 165 (366)
Q Consensus 101 ~~~~~~~-~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~-~dg 165 (366)
..+++.+ + +++++.|+.+. .+.+||+.+++... .+.........++++..++..+ +.|+ .+.
T Consensus 189 ~~~av~~~~--g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ly-v~GG~~~~ 265 (656)
T 1k3i_A 189 AAAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV-VTGGNDAK 265 (656)
T ss_dssp SEEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE-EECSSSTT
T ss_pred eeEEEEecC--CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEE-EeCCCCCC
Confidence 3566777 6 88888886543 58899998875332 2322222123346677777766 6666 456
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cC-----CeEEEEecCCCCCCeeEee-----cccC
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-AD-----KKAYAYDVRKMVDPVLVFD-----GHRK 234 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~~~-----~~~~ 234 (366)
.+.+||.. +.+....-..... ..-.+++..+++ ++++.|+ .+ ..+.+||..+. ....+. ....
T Consensus 266 ~v~~yd~~--t~~W~~~~~~~~~-R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~--~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 266 KTSLYDSS--SDSWIPGPDMQVA-RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLT 339 (656)
T ss_dssp CEEEEEGG--GTEEEECCCCSSC-CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTT--EEEEETTSCSGGGCC
T ss_pred ceEEecCc--CCceeECCCCCcc-ccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCC--cceeCCCcccccccc
Confidence 89999998 4433332222111 122455666777 7888887 34 56899998764 222221 0000
Q ss_pred cEEEEEEc-CCCEEEEEeCCC---------cEEEEecCCCceeeeeecccc-------eeeeEEEEEe-cCCCeEEEecC
Q 017773 235 TVTYIRFL-DVDTLVTAGTDG---------CLKLWNVNDSRVIRTYKGHVN-------NRNFVGLSVW-RHGGLLGCGSE 296 (366)
Q Consensus 235 ~v~~~~~~-~~~~l~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~l~~~~~ 296 (366)
.-....+. ++..++.++.+| .+..||..+.........+.. .....++.+. .++++++.|+.
T Consensus 340 ~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 340 ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred ccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 00001112 444555554443 567888877653333222211 1112222221 37888888885
Q ss_pred CC-----------eEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCC-----------CcEE
Q 017773 297 TN-----------QVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD-----------GLLH 354 (366)
Q Consensus 297 dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----------g~i~ 354 (366)
++ .|.+||..+.+-.... .+.. .....-.+++..| ++++++.||.+ ..+.
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~m----p~~R~~~~~~~l~---~g~i~v~GG~~~~~~~~~~~~~~~v~ 491 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGL----YFARTFHTSVVLP---DGSTFITGGQRRGIPFEDSTPVFTPE 491 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCC----SSCCBSCEEEECT---TSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCC----CCCcccCCeEECC---CCCEEEECCcccCcCcCCCCcccceE
Confidence 42 5777777655433221 0010 0111122445567 88899999865 4688
Q ss_pred EEEeccc
Q 017773 355 VFVGKKK 361 (366)
Q Consensus 355 iw~~~~~ 361 (366)
+||.++.
T Consensus 492 ~ydp~t~ 498 (656)
T 1k3i_A 492 IYVPEQD 498 (656)
T ss_dssp EEEGGGT
T ss_pred EEcCCCC
Confidence 9998653
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.67 E-value=3e-05 Score=67.65 Aligned_cols=202 Identities=11% Similarity=0.102 Sum_probs=114.7
Q ss_pred CceEEEEECCC--CCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 43 DSIGVIEFDPS--DSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 43 ~~i~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
.....++++|+ +..|..+...+.|+.++..++.... +... ......++++++ ++++++-...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~----------~~~P~giavd~d--G~lyVad~~~ 202 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTN----------IGQCADVNFTLN--GDMVVVDDQS 202 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCC----------CSCEEEEEECTT--CCEEEEECCS
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecC----------CCCccEEEECCC--CCEEEEcCCC
Confidence 34678999995 3344444444789999886543321 1111 134789999998 8855554321
Q ss_pred ---C-cEEEEeCCCCce-eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEE
Q 017773 121 ---G-VVMEYDLEKKVP-IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCV 195 (366)
Q Consensus 121 ---g-~i~iw~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 195 (366)
. .+...+...+.. ...+.. .. ....+++.|.+..|+++-..++.|+.+|.. ++.....+...........+
T Consensus 203 ~~~~~gv~~~~~~~~~~~~~~~~~-~~-~P~giavd~~~G~lyv~d~~~~~V~~~d~~--~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 203 SDTNTGIYLFTRASGFTERLSLCN-AR-GAKTCAVHPQNGKIYYTRYHHAMISSYDPA--TGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp CTTSEEEEEECGGGTTCCEEEEEE-CS-SBCCCEECTTTCCEEECBTTCSEEEEECTT--TCCEEEEEEECSCCSSCEEE
T ss_pred CcccceEEEEECCCCeeccccccc-cC-CCCEEEEeCCCCeEEEEECCCCEEEEEECC--CCeEEEEEeccCCCCCcccE
Confidence 1 233333322211 011211 12 456789999555554566667889999987 45542222211222234579
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCC---eeEeecc---------------cCcEEEEEE---------c-CCCEE
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDP---VLVFDGH---------------RKTVTYIRF---------L-DVDTL 247 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~---------------~~~v~~~~~---------~-~~~~l 247 (366)
+++|++..++++-...+.|+.++....... ...+-+. -.....+++ . ++.++
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 999999446666667789999887532111 1111111 123567888 5 55666
Q ss_pred EEEeCCCcEEEEecCCCc
Q 017773 248 VTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 248 ~~~~~d~~i~iwd~~~~~ 265 (366)
++-...+.|+.++. ++.
T Consensus 359 vaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 359 FCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEETTTTEEEEECT-TSE
T ss_pred EEECCCCEEEEECC-CCC
Confidence 66667788999984 453
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=4.2e-05 Score=66.74 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=139.2
Q ss_pred ceeEEEEec-CCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC----cEEEeeCC
Q 017773 99 KLSSLKWKP-GTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG----TMQMWDPR 173 (366)
Q Consensus 99 ~v~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg----~v~~~d~~ 173 (366)
....++++| + +..|+.+...+.|+.+|++.+....... ... ....++++++++.++++...++ .+..++..
T Consensus 138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~-~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS-KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS-CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCEEEEEec-CCC-CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457899997 4 4455555544889999998766444333 222 6889999999997756554333 23444433
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec-ccCcEEEEEEc-CCCE-EEEE
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG-HRKTVTYIRFL-DVDT-LVTA 250 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~-l~~~ 250 (366)
........+.. ......++++|++..++++-..++.|+.++.... ........ .......++++ ++++ +++-
T Consensus 214 -g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 214 -SGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -Cceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 11111122221 1256788999943367777767889999998765 22122211 12346789999 8884 4555
Q ss_pred eCCCcEEEEecCC--Cce--eeeeecc------cc---------eee-eEEEEE------ecCCCeEEEecCCCeEEEEE
Q 017773 251 GTDGCLKLWNVND--SRV--IRTYKGH------VN---------NRN-FVGLSV------WRHGGLLGCGSETNQVFVYD 304 (366)
Q Consensus 251 ~~d~~i~iwd~~~--~~~--~~~~~~~------~~---------~~~-~~~~~~------~~~~~~l~~~~~dg~i~iwd 304 (366)
...+.|..++... ++. +..+.+. .. ... .+.+.. .+++.+.++=...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 5678899987653 211 1222211 00 011 222210 13355666655667788877
Q ss_pred eecCceEEEEeccc--c-------cccCCCCceeeEEEeeccCCC-ceEEEEeCCCCcEEEEEec
Q 017773 305 VRWGEPVWVHDFEP--V-------TAAGSERGFVSSVCWRRVGED-ECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 305 ~~~~~~~~~~~~~~--~-------~~~~~~~~~v~~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~ 359 (366)
.+|+......... . ....+.-.....+++.| + +.++++-..++.|+.++++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~---~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE---ERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET---TTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC---CCCEEEEEECCCCeEEEEccC
Confidence 3454333222100 0 00001123578999988 4 5566666667888888765
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.59 E-value=0.00019 Score=67.27 Aligned_cols=209 Identities=11% Similarity=-0.020 Sum_probs=125.2
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC----ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKK----VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
..+..|+|.+. .+.++++-...+.|+.+++... .....+..... ....|++.+.++.|+++-...+.|.+.++.
T Consensus 424 ~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 424 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC-CcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 35788999985 2556666666788999998753 22233332222 567899998888886777788899999987
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-CeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE-EE
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV-TA 250 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~ 250 (366)
+.....+.. ........|+++|.++.++.+-... +.|...++... .....+...-...+.|++. .+..|+ +-
T Consensus 502 ---G~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 502 ---GVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp ---SSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ---CCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 333333321 2233689999999764555554333 78999988764 2333333333567889987 455554 44
Q ss_pred eCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
...+.|...++........+.........+++++ ..+.++++-...+.|...|..+|+.+..+
T Consensus 577 ~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 577 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCcEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 5567899999865433333332111112233332 23455555566788888887666554443
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.58 E-value=0.00019 Score=59.61 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=143.7
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccC----CC---ceEEEecC--CCcEEEeeCCCCCCceeE
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKG----DP---VLGASGSD--DGTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~~~--dg~v~~~d~~~~~~~~~~ 181 (366)
..+++.....+-+.+||+ .++.+..+.. + .+..+..-|. ++ ..+++.-. +++|.+|++..... .+.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g-~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--G-KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--S-CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--C-CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 345555566778999999 7888887754 2 6777776663 22 23344444 58899997742123 344
Q ss_pred eecC---C--CCCCCeEEEEE--cCCCC-cEEEEEecCCeEEEEecCCC------CCCeeEeecccCcEEEEEEc-CCCE
Q 017773 182 TVQP---S--ASRSAVCCVEF--HPFGS-SLVAAGCADKKAYAYDVRKM------VDPVLVFDGHRKTVTYIRFL-DVDT 246 (366)
Q Consensus 182 ~~~~---~--~~~~~i~~~~~--~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~-~~~~ 246 (366)
.+.. + .....+..+++ +|.+. .++++...+|.+..|++... .+.++.+.. .+.+..+... ....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 4421 1 11146667777 77543 46788888999999998431 134555553 3467777776 6778
Q ss_pred EEEEeCCCcEEEEecC-----CCceeeeee-cc-cceeeeEEEEEecCCC-eEEEec-CCCeEEEEEee-cCceEEEEec
Q 017773 247 LVTAGTDGCLKLWNVN-----DSRVIRTYK-GH-VNNRNFVGLSVWRHGG-LLGCGS-ETNQVFVYDVR-WGEPVWVHDF 316 (366)
Q Consensus 247 l~~~~~d~~i~iwd~~-----~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~~ 316 (366)
|+.+-.+.-|..++.+ +++.+..+. ++ ...+..+++...++++ +|++++ .+++..+||.. +.+.+..+.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 9999888777777754 344554442 21 2356677776446655 555555 57799999997 6777777654
Q ss_pred ccccc--cCCCCce--eeEEEeeccCCCceEEEEeCC--------CCcEEEEEec
Q 017773 317 EPVTA--AGSERGF--VSSVCWRRVGEDECTLVAGGS--------DGLLHVFVGK 359 (366)
Q Consensus 317 ~~~~~--~~~~~~~--v~~~~~~~~~~~~~~l~s~~~--------dg~i~iw~~~ 359 (366)
..... -..+... |..+.+.+.-|.|-+++-=+. +...++.+.+
T Consensus 274 g~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~qnFk~v~w~ 328 (355)
T 3amr_A 274 TDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQNFKIVPWE 328 (355)
T ss_dssp CCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEEHH
T ss_pred cCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCceEEEEEHH
Confidence 33110 0112222 344434332345644444332 4667777643
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.55 E-value=0.00017 Score=62.87 Aligned_cols=247 Identities=10% Similarity=0.050 Sum_probs=139.1
Q ss_pred ceeEEEEecC-CCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC---C-cEEEeeCC
Q 017773 99 KLSSLKWKPG-TSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD---G-TMQMWDPR 173 (366)
Q Consensus 99 ~v~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---g-~v~~~d~~ 173 (366)
....++|.|+ ..+. |+.+...+.|+.+++.++....... ... ....++++++++ |+++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~-~~~-~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT-NIG-QCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC-CCS-CEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec-CCC-CccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 4678999982 1244 4444434889999998776554433 222 688999999998 53554321 1 23333332
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcC-CCCcEEEEEecCCeEEEEecCCCCCC-eeEeec-ccCcEEEEEEc-CCCE-EE
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCADKKAYAYDVRKMVDP-VLVFDG-HRKTVTYIRFL-DVDT-LV 248 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~-~~~~v~~~~~~-~~~~-l~ 248 (366)
. .......+. .......++++| +| .++++-..++.|+.+|..++ .. ...+.. ....-..++++ +++. ++
T Consensus 216 ~-~~~~~~~~~---~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 216 S-GFTERLSLC---NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATG-TLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp G-TTCCEEEEE---ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTC-CEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred C-Ceecccccc---ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCC-eEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 1 111111121 112567789999 55 66666667789999998765 23 122211 12223469998 7774 45
Q ss_pred EEeCCCcEEEEecC--CCce--eeeeecc------c---------ceeeeEEEEE-------ecCCCeEEEecCCCeEEE
Q 017773 249 TAGTDGCLKLWNVN--DSRV--IRTYKGH------V---------NNRNFVGLSV-------WRHGGLLGCGSETNQVFV 302 (366)
Q Consensus 249 ~~~~d~~i~iwd~~--~~~~--~~~~~~~------~---------~~~~~~~~~~-------~~~~~~l~~~~~dg~i~i 302 (366)
+-...+.|+.++.. ++.. ...+.+. . .....+++.. .+++.+.++-...+.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 55567889998765 2321 1122211 0 0122344410 367777777777888998
Q ss_pred EEeecCceEEEEeccc---c------cccCCCCceeeEEEee-ccCCCceEEEEeCCCCcEEEEEec
Q 017773 303 YDVRWGEPVWVHDFEP---V------TAAGSERGFVSSVCWR-RVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 303 wd~~~~~~~~~~~~~~---~------~~~~~~~~~v~~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
++. +|.......... . ......-....+|++. + +|.++++=..++.|+.++++
T Consensus 370 ~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~---~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK---RKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT---TTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC---CCEEEEEeCCCCEEEEEecC
Confidence 874 454332221100 0 0001112347789999 5 77777777778888888775
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.50 E-value=6.3e-06 Score=76.46 Aligned_cols=214 Identities=7% Similarity=-0.052 Sum_probs=127.0
Q ss_pred CceEEEEECCCCCEEEEee-cCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 43 DSIGVIEFDPSDSVFATGG-IARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
..+..++|++.+..|+.+. ..+.|+.+++...........+... .......|++.+. .+.++++-...+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------~~~~P~glavD~~-~g~LY~tD~~~~ 475 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------DIQAPDGLAVDWI-HSNIYWTDSVLG 475 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------CC--CCCEECCCS-SSBCEECCTTTS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------CCCCcceEEEEee-CCcEEEEeccCC
Confidence 4567889998766665554 4578888887651100000000000 0012456777754 155556556678
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF 200 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 200 (366)
.|.++++........+..... ....|++.|.+..|+++-... +.|..+++. +.....+.. ........|+++|+
T Consensus 476 ~I~v~d~dg~~~~~l~~~~~~-~P~giavDp~~g~ly~td~~~~~~I~~~~~d---G~~~~~l~~-~~l~~PnGlavd~~ 550 (699)
T 1n7d_A 476 TVSVADTKGVKRKTLFREQGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIYSLVT-ENIQWPNGITLDLL 550 (699)
T ss_dssp CEEEEBSSSCCEEEECCCSSC-CCCCEECCSSSSCCEECCCSSSCCEEBCCSS---SCCCCEESC-SSCSSCCCEEECTT
T ss_pred eEEEEecCCCceEEEEeCCCC-CcceEEEccCCCcEEEcccCCCCeEEEEeCC---CCCeeEEEe-CCCCCccEEEEecc
Confidence 899999876544333332222 567899999877774544333 788888876 222222211 12236778999998
Q ss_pred CCcEEEEEecCCeEEEEecCCCCCCeeEeec--ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 017773 201 GSSLVAAGCADKKAYAYDVRKMVDPVLVFDG--HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG 272 (366)
Q Consensus 201 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 272 (366)
++.++++-...+.|..+|+... .....+.. .-.....|++..+.++++....+.|..++..+++.+..+..
T Consensus 551 ~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp TCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred CCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 7677777777889999998754 22222221 11223455555445666776778999999888887776654
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00047 Score=60.51 Aligned_cols=249 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred ceEEEEECCC-CC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEE-------ecCCCCcEE
Q 017773 44 SIGVIEFDPS-DS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKW-------KPGTSGRVL 114 (366)
Q Consensus 44 ~i~~~~~s~~-~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~l 114 (366)
....|+|+|. +. ++++-...+.|++.|.++..... +..... ........++| +++ ++.|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~----l~~~~~------~~~~~p~~ia~~~~~~~~d~~--G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS----PLNINT------IPTNRIRSIAFNKKIEGYADE--AEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE----EECCTT------SSCSBEEEEEECCCBTTTBCT--TCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE----EEccCc------cccCCCcEEEEeecccccCCC--CCEE
Confidence 4678999983 44 44444334567778876643322 111100 00134789999 998 8866
Q ss_pred EEEcCCC-------cEEEEeCCC-Ccee-----EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC-------C
Q 017773 115 GSGDYDG-------VVMEYDLEK-KVPI-----FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR-------C 174 (366)
Q Consensus 115 ~~~~~dg-------~i~iw~~~~-~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~-------~ 174 (366)
+.+...+ .|.+.+... +... ..+.... ....++++|++..|+++-..++.|..+|+. .
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~--~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t 285 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK--QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES--CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC--CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence 6555443 266665444 2221 2222211 445788999878876777788899999986 2
Q ss_pred CCC------c---eeEe-ecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe---eEeecc---c-----
Q 017773 175 DGG------K---CVST-VQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV---LVFDGH---R----- 233 (366)
Q Consensus 175 ~~~------~---~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~---~----- 233 (366)
... . .... +.. ........++|+|+|..++++-.....|+.++.......+ ..+-+. .
T Consensus 286 g~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG 364 (496)
T 3kya_A 286 GGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364 (496)
T ss_dssp TCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred ceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence 221 0 0111 222 2233578999999994355555677889997765421111 122111 0
Q ss_pred -------CcEE-EEEEc--------CCCEEEEEeCCCcEEEEecCCCceeeeeeccc---------------c-------
Q 017773 234 -------KTVT-YIRFL--------DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHV---------------N------- 275 (366)
Q Consensus 234 -------~~v~-~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~------- 275 (366)
.... .++.. ++.++++-....+|+.++ .++ .+.++.+.. +
T Consensus 365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~ 442 (496)
T 3kya_A 365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVAR 442 (496)
T ss_dssp BGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCC
T ss_pred cccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhh
Confidence 1123 33442 245566666778899998 455 344443320 0
Q ss_pred --eeeeEEEEEecC-CCeEEEecCCCeEEEEEeecCceE
Q 017773 276 --NRNFVGLSVWRH-GGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 276 --~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
....+++. ++ +.++++=..+.+|+.++++.....
T Consensus 443 f~~P~gIavd--~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 443 FRDVSGLVYD--DVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CSSEEEEEEE--TTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred cCCCcEEEEE--CCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 12234444 75 666666667778888887654443
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.42 E-value=0.00027 Score=64.53 Aligned_cols=238 Identities=8% Similarity=-0.082 Sum_probs=132.4
Q ss_pred CCCcccccccceeeeeecCCCceeeecCCCCccCCCceEEEEECCCCCEEEEee-cCCeEEEEEceecccccceeeeecC
Q 017773 8 QQPQAETTNERARCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGG-IARKIRIYNIKSVLVDHPVVAVVDH 86 (366)
Q Consensus 8 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~ 86 (366)
..|++-.++...+...+.++...-... ....-.....++|++.+..|..+. ..+.|..++++...... .....
T Consensus 8 ~~~~~~~~~~~~I~~i~~~~~~~~~~~---~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~---~v~~~ 81 (619)
T 3s94_A 8 HAPLLLYANRRDLRLVDATNGKENATI---VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVS 81 (619)
T ss_dssp --CCEEEECSSBEEEECCC------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE---EEECS
T ss_pred cCceEEEeccccEEEEeCCCCcceEEE---EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE---EEEeC
Confidence 345555555566666666654210000 011244578999999766665554 45778888876542111 11111
Q ss_pred ceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEec-CCC
Q 017773 87 SKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGS-DDG 165 (366)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~dg 165 (366)
. -.....+++.+. .++++++-...+.|.+.+++...........-. ....|++.|.+..++++-- ..+
T Consensus 82 ~---------~~~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~-~P~~Iavdp~~g~ly~tD~g~~~ 150 (619)
T 3s94_A 82 G---------LLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD-QPRAIALDPSSGFMYWTDWGEVP 150 (619)
T ss_dssp S---------CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCCEEEETTTTEEEEEECSSSC
T ss_pred C---------CCCcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCC-CCceEEEecCCCeEEEeccCCCC
Confidence 0 124788999985 155666666788999999976543333322222 6779999998777755542 246
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCC
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVD 245 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 245 (366)
.|...++. +.....+.. ..-.....++++++++.++.+-...+.|..+|+.... ......+.......|++..+.
T Consensus 151 ~I~r~~~d---G~~~~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~~ 225 (619)
T 3s94_A 151 KIERAGMD---GSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFEDI 225 (619)
T ss_dssp EEEEEETT---SCSCEEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSSE
T ss_pred EEEEEECC---CCceEEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCCE
Confidence 67777776 332222221 1233789999999775666666667889999987642 222222111222456665445
Q ss_pred EEEEEeCCCcEEEEecCCCcee
Q 017773 246 TLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
.+++-...+.|...|..+++..
T Consensus 226 ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 226 LYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEECTTTCSEEEEESSSCCCC
T ss_pred EEEecCCCCEEEEEECCCCccc
Confidence 5556556778988888776443
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.39 E-value=5.7e-06 Score=76.78 Aligned_cols=205 Identities=8% Similarity=-0.073 Sum_probs=119.6
Q ss_pred ceeEEEEecCCCCcEEEE-EcCCCcEEEEeCCC----CceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCC
Q 017773 99 KLSSLKWKPGTSGRVLGS-GDYDGVVMEYDLEK----KVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPR 173 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~ 173 (366)
.+..++|.+. +..|+. -...+.|+.+++.. ......+..... ....|++.+.+..|+++-...+.|.++++.
T Consensus 407 ~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 407 NVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred ceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 4678999986 555544 45568899999875 222222221112 456788887666675665667889999987
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-CeEEEEecCCCCCCeeEeecccCcEEEEEEc-C-CCEEEEE
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-KKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-D-VDTLVTA 250 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~ 250 (366)
.. ....+.. ........++++|.++.++++-... +.|..+++.... ........-...+.|+++ + +.++++-
T Consensus 484 --g~-~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 484 --GV-KRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp --SC-CEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred --CC-ceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 33 3333321 1223567889999764555544333 788888876542 222222222345678897 4 4555666
Q ss_pred eCCCcEEEEecCCCceeeeeec--ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEE
Q 017773 251 GTDGCLKLWNVNDSRVIRTYKG--HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 314 (366)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 314 (366)
...+.|..+++........+.. .......+++. .+ .++++....+.|..++..+++.+..+
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 6677899999864322222211 11112234443 43 55556667789999998777766554
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.38 E-value=0.0023 Score=62.70 Aligned_cols=287 Identities=11% Similarity=0.030 Sum_probs=148.4
Q ss_pred CCceEEEEECCC------CCEEEEeec-CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEE
Q 017773 42 SDSIGVIEFDPS------DSVFATGGI-ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVL 114 (366)
Q Consensus 42 ~~~i~~~~~s~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 114 (366)
...|.|+++.|. ++++|.|.. |++|+|+++.+.+... ...+... ....++.+..-....+|
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~-~~~L~~~-----------~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH-KEMLGGE-----------IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE-EEECCSS-----------CCEEEEEEEEETTEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE-EEECCCC-----------CCCcEEEEEEeCCCcEE
Confidence 567999999864 369999996 9999999997533221 1111110 12233333221125688
Q ss_pred EEEcCCCcEEEEeCC--CCceeEe--eecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCC
Q 017773 115 GSGDYDGVVMEYDLE--KKVPIFE--RDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRS 190 (366)
Q Consensus 115 ~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~ 190 (366)
..|-.||.+.-+.++ ++..... ...... ++.-..+...+..-+++.+ +....++.-+ ..-....+... .
T Consensus 621 ~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~-pv~L~~~~~~~~~~V~a~s-~rp~liy~~~--~~l~~s~l~~~---~ 693 (1158)
T 3ei3_A 621 LCALGDGALFYFGLNIETGLLSDRKKVTLGTQ-PTVLRTFRSLSTTNVFACS-DRPTVIYSSN--HKLVFSNVNLK---E 693 (1158)
T ss_dssp EEEETTSEEEEEEECTTTCCEEEEEEEECCSS-CCEEEEEESSSCEEEEEES-SSCEEEEESS--SSEEEEEBSSS---C
T ss_pred EEEeCCCeEEEEEEcCCCCccccceeEEcCCC-ceEEEEEeeCCceeEEEEC-CCCEEEEEcC--CceEEeccChH---H
Confidence 899999988666554 4433221 112222 5544444444443323333 3444444433 11111122211 1
Q ss_pred CeEEEEEcCCC-CcEEEEEecCCeEEEEecCCCCCC-eeEeecccCcEEEEEEc-CCCEEEEEeC---------------
Q 017773 191 AVCCVEFHPFG-SSLVAAGCADKKAYAYDVRKMVDP-VLVFDGHRKTVTYIRFL-DVDTLVTAGT--------------- 252 (366)
Q Consensus 191 ~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~--------------- 252 (366)
--....|+... +.-++.. .++.++|..+....+. ++.+. -...+..++++ +.+.++.+..
T Consensus 694 v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~ 771 (1158)
T 3ei3_A 694 VNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR 771 (1158)
T ss_dssp CCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred hceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence 11233443221 1233333 3456888887654222 22222 23456666666 4443332221
Q ss_pred ----------------------------------CCcEEEEecCCCceeeeeecccc-eeeeEEE-EEec-CCCeEEEec
Q 017773 253 ----------------------------------DGCLKLWNVNDSRVIRTYKGHVN-NRNFVGL-SVWR-HGGLLGCGS 295 (366)
Q Consensus 253 ----------------------------------d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~l~~~~ 295 (366)
-+.|++.|..+.+.+..++-... .+.+++. .+.. ...+++.|.
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGT 851 (1158)
T 3ei3_A 772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGT 851 (1158)
T ss_dssp CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEE
T ss_pred hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEe
Confidence 12477788777776666543222 2333332 2212 246788775
Q ss_pred ----------CCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccC
Q 017773 296 ----------ETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKP 362 (366)
Q Consensus 296 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 362 (366)
..|.|.+|++..++.....+.+ ..++|++++-- +|++|++.+ ..|++|++..++
T Consensus 852 a~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-------v~g~v~al~~~----~g~Lla~ig--~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 852 AMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-------VKGAVYSMVEF----NGKLLASIN--STVRLYEWTTEK 915 (1158)
T ss_dssp EECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-------ESSCEEEEEEE----TTEEEEEET--TEEEEEEECTTS
T ss_pred eecCCCCCCCCceEEEEEEEECCEEEEEEEEE-------cCCcCEEEeee----CCEEEEEcC--CEEEEEECCCCc
Confidence 3589999999855443333221 35788888754 555665554 679999997643
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.0014 Score=57.51 Aligned_cols=254 Identities=10% Similarity=-0.005 Sum_probs=145.0
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC--CCceeeEEe-------ccCCCceEEEecCCCc---
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG--GRRVWSVDY-------SKGDPVLGASGSDDGT--- 166 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~v~~i~~-------~~~~~~l~~~~~~dg~--- 166 (366)
....|+|.|...++++++-...+.|++.|++++.......... ......++| +++++.++++-..++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999982124445544445679999998876655443322 125889999 9999877555444422
Q ss_pred ---EEEeeCCCCCCcee-----EeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecC-------CCCC-----C-
Q 017773 167 ---MQMWDPRCDGGKCV-----STVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVR-------KMVD-----P- 225 (366)
Q Consensus 167 ---v~~~d~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~-----~- 225 (366)
|.+++... .+... ..+.... ....++++|+++.++++-..++.|+.+|+. ++.. +
T Consensus 220 ~~~V~~i~r~~-~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNA-DGTFDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCT-TSCCSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCC-CCceeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 66666431 11211 1222111 456789999665777777788999999997 4421 0
Q ss_pred ----eeE-ee-cccCcEEEEEEc-CCCE-EEEEeCCCcEEEEecC--CCce--eeeeecc---cc------------eee
Q 017773 226 ----VLV-FD-GHRKTVTYIRFL-DVDT-LVTAGTDGCLKLWNVN--DSRV--IRTYKGH---VN------------NRN 278 (366)
Q Consensus 226 ----~~~-~~-~~~~~v~~~~~~-~~~~-l~~~~~d~~i~iwd~~--~~~~--~~~~~~~---~~------------~~~ 278 (366)
... +. +.......++|+ ++++ +++-.....|+.++.. .+.. ...+.+. .+ ...
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 111 21 123445789999 8885 4555567788886653 3221 1222221 00 011
Q ss_pred -eEEEEEe------cCCCeEEEecCCCeEEEEEeecCceEEEEecccc---------------cccCCCCceeeEEEeec
Q 017773 279 -FVGLSVW------RHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPV---------------TAAGSERGFVSSVCWRR 336 (366)
Q Consensus 279 -~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~ 336 (366)
.+... + +++.++++=..+.+|+.++ .+|........... ....+.-....+|++.+
T Consensus 376 ~gv~vd-~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVK-NPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEE-CTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEc-cccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 12221 1 3456666666778888888 45543322211000 00011223477899998
Q ss_pred cCCC-ceEEEEeCCCCcEEEEEeccc
Q 017773 337 VGED-ECTLVAGGSDGLLHVFVGKKK 361 (366)
Q Consensus 337 ~~~~-~~~l~s~~~dg~i~iw~~~~~ 361 (366)
+ |.++++=..+..|+.++++..
T Consensus 454 ---~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 454 ---VKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp ---TTTEEEEEETTTTEEEEEEECCC
T ss_pred ---CCCEEEEEeCCCCEEEEEECCCC
Confidence 6 677777778889999998763
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.31 E-value=0.0019 Score=59.04 Aligned_cols=232 Identities=6% Similarity=-0.092 Sum_probs=140.4
Q ss_pred EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE
Q 017773 56 VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF 135 (366)
Q Consensus 56 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 135 (366)
+|+.+ ..+.|+..++++..... ...+.+ -..+..++|++. ++.++++-..++.|..++++......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~-----------~~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~~~~~ 73 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLTG-----------VKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEH 73 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCCS-----------CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcCC-----------CCceEEEEEECC-CCEEEEEECCCCeEEEEECCCCCcEE
Confidence 44444 45689988887643211 011111 124789999987 25555666678899999987654433
Q ss_pred eeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEE-ecCCeE
Q 017773 136 ERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAG-CADKKA 214 (366)
Q Consensus 136 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i 214 (366)
.+..... ....+++.+.++.|.++-...+.|.+.++. .......+. ........++++|..+.++.+- +..+.|
T Consensus 74 v~~~g~~-~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 74 VVEFGLD-YPEGMAVDWLGKNLYWADTGTNRIEVSKLD--GQHRQVLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp EECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETT--STTCEEEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEeCCCC-CcceEEEEeCCCEEEEEECCCCEEEEEecC--CCcEEEEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 3333222 567889988778776777778899999987 322222222 2234679999999653555543 235788
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEE-EEeCCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEE
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLV-TAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
...++... ...... ..-.....+++. +++.|+ +-...+.|..+|+..... ..+...-.....+++. . +.+++
T Consensus 149 ~r~~~dG~-~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~--~-~~ly~ 222 (628)
T 4a0p_A 149 DRAAMDGS-ERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY--Q-DYIYW 222 (628)
T ss_dssp EEEETTSC-SCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE--T-TEEEE
T ss_pred EEEeCCCC-ceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE--C-CEEEE
Confidence 88888765 232223 334567889998 555554 445667899999865433 2333222222344443 3 45555
Q ss_pred EecCCCeEEEEEeecCceEE
Q 017773 293 CGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 293 ~~~~dg~i~iwd~~~~~~~~ 312 (366)
+-...+.|...|..+++...
T Consensus 223 tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 223 TDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp EETTTTEEEEEETTTCCSCE
T ss_pred ecCCCCEEEEEECCCCCceE
Confidence 65567888888876665433
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.28 E-value=0.0023 Score=58.57 Aligned_cols=204 Identities=7% Similarity=-0.067 Sum_probs=128.2
Q ss_pred CCceEEEEECCCCCEEE-EeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 42 SDSIGVIEFDPSDSVFA-TGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
-..+..++|++.+..|. +-..++.|..++++..... ...... ......+++.+. .++++++-...
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~----~v~~~g---------~~~P~GlAvD~~-~~~LY~tD~~~ 101 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE----HVVEFG---------LDYPEGMAVDWL-GKNLYWADTGT 101 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEECSS---------CSCCCEEEEETT-TTEEEEEETTT
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE----EEEeCC---------CCCcceEEEEeC-CCEEEEEECCC
Confidence 34678999999665554 4445688888887653221 111110 123667888865 24555666667
Q ss_pred CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEe-cCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcC
Q 017773 121 GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASG-SDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199 (366)
Q Consensus 121 g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (366)
+.|.+.+++.......+...-. ....|++.|....++.+- +..+.|...++. ......... .......|++++
T Consensus 102 ~~I~v~~~dG~~~~~l~~~~l~-~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~---~~~~P~GlalD~ 175 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQVLVWKDLD-SPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP---NVGRANGLTIDY 175 (628)
T ss_dssp TEEEEEETTSTTCEEEECSSCC-CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC---SCSSEEEEEEET
T ss_pred CEEEEEecCCCcEEEEEeCCCC-CcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC---CCCCcceEEEcc
Confidence 8999999976543333323223 678999999777774553 235678888876 332222222 234789999999
Q ss_pred CCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCcee
Q 017773 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVI 267 (366)
Q Consensus 200 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 267 (366)
+++.++.+=...+.|..+|+.... . ..+...-.....+++..+.++++-...+.|...|..+++..
T Consensus 176 ~~~~LY~aD~~~~~I~~~d~dG~~-~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 176 AKRRLYWTDLDTNLIESSNMLGLN-R-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCS-C-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ccCEEEEEECCCCEEEEEcCCCCc-e-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCce
Confidence 875666666677899999997753 2 33333333456777765555666666788988887666433
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.26 E-value=0.0022 Score=58.66 Aligned_cols=203 Identities=8% Similarity=-0.023 Sum_probs=119.2
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce-eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCC
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP-IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGG 177 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~ 177 (366)
....++|++. ++.++++-...+.|..++++.... ...+...-. ....+++.+.++.++++-...+.|.+.++. +
T Consensus 41 ~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d---G 115 (619)
T 3s94_A 41 DAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNRIEVSNLD---G 115 (619)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETT---S
T ss_pred ceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCCCEEEEEECC---C
Confidence 4788999986 244455555678899999876532 222322223 688999999788776777778999999987 3
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-cCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEE-EEEeCCC
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-ADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTL-VTAGTDG 254 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~ 254 (366)
.....+.. ........|+++|.++.++.+-- ..+.|...++... .........-...+.+++. +++.| ++-...+
T Consensus 116 ~~~~~l~~-~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~ 193 (619)
T 3s94_A 116 SLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 193 (619)
T ss_dssp CSCEEEEC-SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEe-CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence 33222221 22336789999997645555532 2467877777654 2333333334457889998 44544 4545567
Q ss_pred cEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceE
Q 017773 255 CLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPV 311 (366)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 311 (366)
.|..+|+..........+.......+++. .+ .+.++-...+.|...|..+++..
T Consensus 194 ~I~~~~~dG~~~~~~~~~~~~~P~gi~~~--~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 194 FIHKSNLDGTNRQAVVKGSLPHPFALTLF--ED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp CEEEESSSCCEEC---------CCCEEES--SS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred eEEEecCCCCccEEEEeCCCCCceEEEEe--CC-EEEEecCCCCEEEEEECCCCccc
Confidence 89999986543322222111112234443 44 45555556788999988777544
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.21 E-value=0.0018 Score=54.18 Aligned_cols=275 Identities=9% Similarity=0.016 Sum_probs=139.4
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...+.+|.|.+++..+++| ..|.| +...+.++.-. ....... .....+.++.|.+ +..++. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~-~~~~~~~--------~~~~~~~~i~~~~---~~~~~~-g~~g 99 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWE-PRTLVLD--------HSDYRFNSVSFQG---NEGWIV-GEPP 99 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCE-ECCCCCS--------CCCCEEEEEEEET---TEEEEE-EETT
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCe-ECCCCCC--------CCCccEEEEEecC---CeEEEE-ECCC
Confidence 4579999999888777754 56754 22222222111 0001000 0123588899875 444444 4456
Q ss_pred cEEEEeCCCCceeEeeec---CCCCceeeEEeccCCCceEEEecCCCcEE-EeeCCCCCCceeEeecCCCCCCCeEEEEE
Q 017773 122 VVMEYDLEKKVPIFERDE---HGGRRVWSVDYSKGDPVLGASGSDDGTMQ-MWDPRCDGGKCVSTVQPSASRSAVCCVEF 197 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~~dg~v~-~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (366)
.|.. ..+.++.-..... ... .+..+.+.+++..+ +.+. +|.|. -.| .++.-..... .....+..+++
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~-~g~v~~S~D----gG~tW~~~~~-~~~~~~~~~~~ 170 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPG-SPRLIKALGNGSAE-MITN-VGAIYRTKD----SGKNWQALVQ-EAIGVMRNLNR 170 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSS-CEEEEEEEETTEEE-EEET-TCCEEEESS----TTSSEEEEEC-SCCCCEEEEEE
T ss_pred eEEE-ECCCCCCceECccccCCCC-CeEEEEEECCCCEE-EEeC-CccEEEEcC----CCCCCEEeec-CCCcceEEEEE
Confidence 4443 3343443222221 122 56778777655443 5554 55443 233 2333333322 23447889999
Q ss_pred cCCCCcEEEEEecCCeEEE-EecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeeec---
Q 017773 198 HPFGSSLVAAGCADKKAYA-YDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYKG--- 272 (366)
Q Consensus 198 ~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--- 272 (366)
.|++ .+++++ .+|.++. .|- .+..-...-......+..+.+. ++. ++..+.+|.+++.+...++.-..+..
T Consensus 171 ~~~~-~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~ 246 (327)
T 2xbg_A 171 SPSG-EYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSPLR 246 (327)
T ss_dssp CTTS-CEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCTTS
T ss_pred cCCC-cEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCCcc
Confidence 9987 676666 4555544 332 1111111222345678888887 554 45566678877764222332222221
Q ss_pred -ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 273 -HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
....+..+. +.+++.+++++. +|.| .+..+.|+.-..+... ......+.++.|.+ ++. +++++.+|
T Consensus 247 ~~~~~~~~v~--~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~-----~~~~~~~~~v~~~~---~~~-~~~~G~~G 313 (327)
T 2xbg_A 247 RNSVGFLDLA--YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV-----KKVPSNFYKILFFS---PDQ-GFILGQKG 313 (327)
T ss_dssp SCCSCEEEEE--ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGG-----TTSSSCCCEEEEEE---TTE-EEEECSTT
T ss_pred cCCcceEEEE--ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCcc-----CCCCCCeEEEEEEC---CCc-eEEEcCCc
Confidence 111233444 447777777665 5665 3344444332222110 11234578888875 544 56667899
Q ss_pred cEEEEE
Q 017773 352 LLHVFV 357 (366)
Q Consensus 352 ~i~iw~ 357 (366)
.|.-++
T Consensus 314 ~i~~~~ 319 (327)
T 2xbg_A 314 ILLRYV 319 (327)
T ss_dssp EEEEEC
T ss_pred eEEEEc
Confidence 766554
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.19 E-value=0.0016 Score=53.12 Aligned_cols=259 Identities=10% Similarity=0.126 Sum_probs=158.6
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCC
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGR 143 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 143 (366)
..|.|-|+.++.... .... .--+.-.+|. .+.+|.-. ..++.++|+++.+.+......+
T Consensus 49 ~~VvIiDl~n~~~~~-Rrpi---------------~AdsAIMnP~--~~ViALra-g~~LQiFnletK~klks~~~~e-- 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPI-RRPI---------------SADSAIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-- 107 (365)
T ss_dssp EEEEEEETTSTTSCE-EEEC---------------CCSEEEECSS--SSEEEEEE-TTEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEECCCCCCcc-cccc---------------ccceeeeCCC--ccEEEEec-CCeEEEechHHhhhhcceecCC--
Confidence 368888888755432 0011 1234556887 77776655 6789999999998888887765
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC--CCCCeEEEEEcCCCCcEEEEEe------cCCeEE
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA--SRSAVCCVEFHPFGSSLVAAGC------ADKKAY 215 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~------~d~~i~ 215 (366)
.|.-=.|-.....-+++ +..|+-|++.. ...+.+.+.... ....|..-..+++..-++++|- -.|.+.
T Consensus 108 ~VvfWkWis~~~L~lVT---~taVyHWs~~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVT---DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp CEEEEEECSSSEEEEEE---SSEEEEEESST-TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred ccEEEEecCCCeEEEEc---CCcEEEEcccC-CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEE
Confidence 67777777544433333 45799999983 446666665432 1346777778888744444442 247789
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc----CCCEEEEEeC---CCcEEEEecCCC---ce------eeee-ecccceee
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL----DVDTLVTAGT---DGCLKLWNVNDS---RV------IRTY-KGHVNNRN 278 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~---d~~i~iwd~~~~---~~------~~~~-~~~~~~~~ 278 (366)
+|..+. +..+.+++|......+... +..+|+.+.. .+.+.+-++... .+ +..+ ......-.
T Consensus 184 LYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DF 261 (365)
T 2xzh_A 184 LYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 261 (365)
T ss_dssp EEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCC
T ss_pred EEeecc--cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCc
Confidence 999887 4677888887766555443 1123443332 258889888432 11 1111 11111112
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEe
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVG 358 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 358 (366)
-+++..++.-..++.-+.-|.|++||++++.+++.-++. ...|..-+-.. ...=++.....|.|.--.+
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--------~d~iF~ta~~~---~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--------GETIFVTAPHE---ATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEEEEEEEG---GGTEEEEEETTCEEEEEEE
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--------CCceEEecccC---CCCcEEEEcCCCEEEEEEE
Confidence 344444588888888889999999999999999887654 34454444433 2123444456776655555
Q ss_pred cc
Q 017773 359 KK 360 (366)
Q Consensus 359 ~~ 360 (366)
+.
T Consensus 331 ~~ 332 (365)
T 2xzh_A 331 EE 332 (365)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.18 E-value=0.0015 Score=53.94 Aligned_cols=226 Identities=13% Similarity=0.072 Sum_probs=113.0
Q ss_pred CcEEEEEc-CC-----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCC---
Q 017773 111 GRVLGSGD-YD-----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDG--- 176 (366)
Q Consensus 111 ~~~l~~~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~--- 176 (366)
+.+++.|+ .+ ..+.+||+.+++-...-.....+.-.+++. . +..+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45666666 32 368889988775332211111111112222 2 34455777654 468899988333
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEE
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVT 249 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~ 249 (366)
-+.+..+. ........+.+ ++ .+++.|+.+ ..+.+||+.+. ....+.... ..-.+++..++.+++.
T Consensus 93 W~~~~~~p--~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 165 (301)
T 2vpj_A 93 WYSVAPMN--VRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGAGLVVASGVIYCL 165 (301)
T ss_dssp CEEECCCS--SCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSCEEEEETTEEEEE
T ss_pred eEECCCCC--CCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccceEEEECCEEEEE
Confidence 22222222 11112222333 34 677777654 36889998765 222221111 1111222236777788
Q ss_pred EeCC-----CcEEEEecCCCceee--eeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCceEEEEecc
Q 017773 250 AGTD-----GCLKLWNVNDSRVIR--TYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 250 ~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 317 (366)
|+.+ ..+.+||..+.+-.. .+.... ....+.. .++++++.|+.+ ..+.+||+.+.+-...-..+
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKR--SGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCccc--ccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7765 358899987763322 221111 1111222 367777888764 46889998776543221111
Q ss_pred cccccCCCCceeeEEEeeccCCCceEEEEeCCC-----CcEEEEEecc
Q 017773 318 PVTAAGSERGFVSSVCWRRVGEDECTLVAGGSD-----GLLHVFVGKK 360 (366)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~ 360 (366)
. ....-..+.+ ++++++.|+.+ ..+.+||+++
T Consensus 242 ~------~r~~~~~~~~-----~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 242 T------PRCYVGATVL-----RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp S------CCBSCEEEEE-----TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred C------cccceeEEEE-----CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 0 1111112222 66688888765 3577888765
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.04 E-value=0.0036 Score=51.59 Aligned_cols=226 Identities=18% Similarity=0.150 Sum_probs=111.7
Q ss_pred CcEEEEEcCC----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCCCceeE
Q 017773 111 GRVLGSGDYD----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDGGKCVS 181 (366)
Q Consensus 111 ~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~~~~~~ 181 (366)
+.+++.|+.+ ..+..||+.+.+-...-.....+.-.+++.. +..+++.|+.+ ..+.+||.. +.+...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~--~~~W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV--KDQWTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETT--TTEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCC--CCceee
Confidence 4455556543 4578899887753322111111111122222 34455777654 358889987 333322
Q ss_pred eecCCCCCCCeEEEEEcCCCCcEEEEEecCC-----eEEEEecCCCCCCeeEeecccC--cEEEEEEcCCCEEEEEeCC-
Q 017773 182 TVQPSASRSAVCCVEFHPFGSSLVAAGCADK-----KAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDVDTLVTAGTD- 253 (366)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d- 253 (366)
.-...........+.+ ++ .+++.|+.++ .+.+||+.+. ....+..... .-.+++..++.+++.|+.+
T Consensus 92 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred CCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 2222121112222232 34 6777777553 5778888764 2222211111 1112222366777777643
Q ss_pred ------CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCceEEEEeccccc
Q 017773 254 ------GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 254 ------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
..+.+||..+.+- +..+..... ...... -++++++.|+.+ ..+.+||+.+.+-...-..+.
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-- 240 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRS--GAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-- 240 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCB--SCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccc--cccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--
Confidence 3588999877632 222221111 111122 367888888764 368888887664432211111
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeCCCC-----cEEEEEecc
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSDG-----LLHVFVGKK 360 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~ 360 (366)
....| +++. - ++++++.|+.++ .+.+||+++
T Consensus 241 ~r~~~-----~~~~-~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 241 CRRNA-----GVCA-V---NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp CCBSC-----EEEE-E---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred ccccC-----eEEE-E---CCEEEEECCcCCCcccccEEEEcCCC
Confidence 00111 1222 2 667888887654 488888765
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.02 E-value=0.0039 Score=51.47 Aligned_cols=227 Identities=12% Similarity=0.070 Sum_probs=112.8
Q ss_pred CcEEEEEcC--CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC----CcEEEeeCCCCCCceeEeec
Q 017773 111 GRVLGSGDY--DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD----GTMQMWDPRCDGGKCVSTVQ 184 (366)
Q Consensus 111 ~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----g~v~~~d~~~~~~~~~~~~~ 184 (366)
+.+++.|+. ...+.+||+.+++-...-.....+.-.+++. - +..+++.|+.+ ..+.+||+. +.+....-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~--~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVV--KDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETT--TTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCC--CCeEEECCC
Confidence 345555654 3578899998875433211111111112222 2 34455777654 568889988 443332222
Q ss_pred CCCCCCCeEEEEEcCCCCcEEEEEecC------CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEEEeC----
Q 017773 185 PSASRSAVCCVEFHPFGSSLVAAGCAD------KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVTAGT---- 252 (366)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~---- 252 (366)
.+........+.+ ++ .+++.|+.+ ..+.+||+.+. ....+.... ..-.+++..++.+++.|+.
T Consensus 88 ~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN 162 (306)
T ss_dssp CSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEESCT
T ss_pred CCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEEEEECCEEEEECCCCCCC
Confidence 2222112222333 34 677777765 46889998775 222221111 1111222236677777764
Q ss_pred -----CCcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCceEEEEeccccc
Q 017773 253 -----DGCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEPVWVHDFEPVT 320 (366)
Q Consensus 253 -----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 320 (366)
-..+.+||..+.+- +..+... .....+.. -++++++.|+.+ ..+.+||+.+.+-...-..+
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--- 235 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEA--RKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP--- 235 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSC--CBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS---
T ss_pred CcccccceEEEeCCCCCeEEECCCccch--hhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC---
Confidence 34588999887632 2222111 11111222 367777777754 35788888766433211111
Q ss_pred ccCCCCceeeEEEeeccCCCceEEEEeCCC-----CcEEEEEeccc
Q 017773 321 AAGSERGFVSSVCWRRVGEDECTLVAGGSD-----GLLHVFVGKKK 361 (366)
Q Consensus 321 ~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 361 (366)
........+.+ ++++++.|+.+ ..+.+||+++.
T Consensus 236 ---~~r~~~~~~~~-----~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 236 ---WKGVTVKCAAV-----GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ---CCBSCCEEEEE-----TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ---CCccceeEEEE-----CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 11111222222 56688888754 45788887653
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.99 E-value=0.0043 Score=50.74 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=143.7
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEE
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEY 126 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 126 (366)
+.-.+|..+.+|.-. ..++.|+|+++..... ...- +.+|.-=.|-.+ +.|+-.+ +..|.-|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klk---s~~~-----------~e~VvfWkWis~---~~L~lVT-~taVyHW 131 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---AHTM-----------TDDVTFWKWISL---NTVALVT-DNAVYHW 131 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE---EEEC-----------SSCEEEEEECSS---SEEEEEE-SSEEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhc---ceec-----------CCccEEEEecCC---CeEEEEc-CCcEEEE
Confidence 345688888887765 6789999998865433 1111 234666667653 3444444 4679999
Q ss_pred eCCC-CceeEeeecCC---CCceeeEEeccCCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 127 DLEK-KVPIFERDEHG---GRRVWSVDYSKGDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 127 ~~~~-~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
+++. ..+.+.+..|. +..|..-..+++.+.++++|- -.|.+.+|..+ .+..+.++ +|......+.
T Consensus 132 s~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e---r~~sQ~ie--Ghaa~F~~~~ 206 (365)
T 2xzh_A 132 SMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQPIE--GHAASFAQFK 206 (365)
T ss_dssp ESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT---TTEEEEEC--CSEEEEEEEC
T ss_pred cccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec---ccccceee--eeeeeeEEEe
Confidence 9975 35555555443 236777777888888866654 24778999987 44555555 4422222222
Q ss_pred Ec--CCCCcEEEEEec---CCeEEEEecCCC--CCC------eeEeec---ccCcEEEEEEc-CCCEEEEEeCCCcEEEE
Q 017773 197 FH--PFGSSLVAAGCA---DKKAYAYDVRKM--VDP------VLVFDG---HRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 197 ~~--~~~~~~l~~~~~---d~~i~i~d~~~~--~~~------~~~~~~---~~~~v~~~~~~-~~~~l~~~~~d~~i~iw 259 (366)
+. +....+++.+.. .+.+++.++... ..+ +..+.. ..+-..++..+ .-..++.-+.-|.|.+|
T Consensus 207 ~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihly 286 (365)
T 2xzh_A 207 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 286 (365)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEE
Confidence 21 111123443333 258999998543 111 111111 13344567777 66788888899999999
Q ss_pred ecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 260 NVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
|+.++.++..-+-....+...+-. .+..=++.....|.|.--.++..+.
T Consensus 287 DleTgt~i~~nrIS~d~iF~ta~~--~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 287 DLETGTCIYMNRISGETIFVTAPH--EATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE--GGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EcccCcEEEEeccCCCceEEeccc--CCCCcEEEEcCCCEEEEEEECcccE
Confidence 999999998877666666444432 4433344444777777666665443
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.99 E-value=0.016 Score=56.98 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=105.6
Q ss_pred cEEEeeCCCCCCceeEeecCCCCCCCeEEEE---EcCCCCcEEEEEe----------cCCeEEEEecCCCCCCeeE-eec
Q 017773 166 TMQMWDPRCDGGKCVSTVQPSASRSAVCCVE---FHPFGSSLVAAGC----------ADKKAYAYDVRKMVDPVLV-FDG 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~-~~~ 231 (366)
.|++.|.. +.+.+..+..... ..+.+++ |..+...++++|+ ..|.|++|++... +.... -..
T Consensus 808 ~i~lidp~--t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~ 883 (1158)
T 3ei3_A 808 NLLIIDQH--TFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKE 883 (1158)
T ss_dssp EEEEEETT--TCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEE
T ss_pred EEEEEeCC--CCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEE
Confidence 36666665 5566555554432 2444444 3333346888886 3578999999743 22111 123
Q ss_pred ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeec-ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCc-
Q 017773 232 HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKG-HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGE- 309 (366)
Q Consensus 232 ~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 309 (366)
.++++++++--+|.++++. ...|++|++...+.+. ... +-..+..+.+. ..+++++.|..-..|.+...+..+
T Consensus 884 v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~--~~~~~I~vgD~~~Sv~~~~y~~~~~ 958 (1158)
T 3ei3_A 884 VKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELR-TECNHYNNIMALYLK--TKGDFILVGDLMRSVLLLAYKPMEG 958 (1158)
T ss_dssp ESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEE-EEEEECCCSCEEEEE--EETTEEEEEESSBCEEEEEEETTTT
T ss_pred cCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEE-EEeeccccEEEEEEe--ccCCEEEEEEhhheEEEEEEEcCCC
Confidence 4678888876666444433 4789999998765444 211 11112233333 457889999887788887665322
Q ss_pred eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 310 PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
.+..+.. ..+..+++++.+-. + ..++.+..+|.|.+.....
T Consensus 959 ~L~~~a~------D~~~~~vta~~~ld---~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 959 NFEEIAR------DFNPNWMSAVEILD---D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEEE------CCSCBCEEEEEEEE---T-TEEEEEETTSEEEEEEECT
T ss_pred eEEEEEe------ecccccEEEEEEEc---c-CcEEEEcCCCcEEEEecCC
Confidence 2222211 22456788998874 3 3677789999999998765
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.98 E-value=0.0047 Score=50.85 Aligned_cols=188 Identities=17% Similarity=0.139 Sum_probs=95.7
Q ss_pred CcEEEEEcCC-----CcEEEEeCCCCc---eeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCCC
Q 017773 111 GRVLGSGDYD-----GVVMEYDLEKKV---PIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDGG 177 (366)
Q Consensus 111 ~~~l~~~~~d-----g~i~iw~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~~ 177 (366)
+.+++.|+.+ ..+.+||+.+++ -...-.....+.-.+++.. + ..+++.|+.+ ..+.+||+.+..-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-G-DMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-C-CEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 6777777754 468999998776 3332221211111222222 3 4454666643 3588899883222
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCCeeEeecccCc--EEEEEEcCCCEEEEE
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGHRKT--VTYIRFLDVDTLVTA 250 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~ 250 (366)
..+..+. .....-..+.+ ++ .+++.|+.+ ..+.+||+.+. ....+.....+ -.++...++.+++.|
T Consensus 141 ~~~~~~p--~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 141 SMLGDMQ--TAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp EEEEECS--SCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred EECCCCC--CCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEe
Confidence 2222222 11112222233 34 677777754 45889998764 22222211111 112222367777888
Q ss_pred eCC-----CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCc
Q 017773 251 GTD-----GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGE 309 (366)
Q Consensus 251 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 309 (366)
+.+ ..+.+||+.+.+-...-..........+.. -++++++.|+.+ ..+.+||+++.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 764 468899998764322111111111112222 367788888765 357777776554
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0059 Score=50.75 Aligned_cols=186 Identities=10% Similarity=0.120 Sum_probs=113.9
Q ss_pred eEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCC----CCc--EEEEEec---CCeEEEEecCCCCCCee
Q 017773 157 LGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPF----GSS--LVAAGCA---DKKAYAYDVRKMVDPVL 227 (366)
Q Consensus 157 l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--~l~~~~~---d~~i~i~d~~~~~~~~~ 227 (366)
+++.....+-+.+||+. ++.+..+.. +.++.+..-|. |.. ++++... +++|.+|++......+.
T Consensus 42 ~ii~t~k~~gL~Vydl~---G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD---GKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp EEEEEETTTEEEEEETT---SCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCCEEEEcCC---CcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 33666667889999996 788887753 26777777662 111 3333333 57899997742223444
Q ss_pred Eeec------cc-CcEEEEEE--c--CCC-EEEEEeCCCcEEEEecC-------CCceeeeeecccceeeeEEEEEecCC
Q 017773 228 VFDG------HR-KTVTYIRF--L--DVD-TLVTAGTDGCLKLWNVN-------DSRVIRTYKGHVNNRNFVGLSVWRHG 288 (366)
Q Consensus 228 ~~~~------~~-~~v~~~~~--~--~~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (366)
.+.. .. ..+..+++ + .+. ++++...+|.+..|++. +.+.++++.... .+..+... +..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvD--d~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAAD--DEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEE--TTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEc--CCC
Confidence 4421 11 45666777 4 343 67888889999999983 346677777543 44455555 888
Q ss_pred CeEEEecCCCeEEEEEee-----cCceEEEEecccccccCCCCceeeEEEeeccCCCce--EEEEeCCCCcEEEEEec
Q 017773 289 GLLGCGSETNQVFVYDVR-----WGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDEC--TLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~l~s~~~dg~i~iw~~~ 359 (366)
..|+.+-++.-|..++.+ +++.+..+.. ..-...+..|+.-+.. +++ .|+++=.++++.+|+.+
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 899999888665555543 2333332211 1123358888885422 333 44454467889999986
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.90 E-value=0.0084 Score=51.08 Aligned_cols=260 Identities=10% Similarity=0.126 Sum_probs=159.8
Q ss_pred CCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCC
Q 017773 63 ARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGG 142 (366)
Q Consensus 63 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 142 (366)
+..|.|-|+.++.... .... .--+.-.+|. .+.+|.-. ..++.++|+++...+.......
T Consensus 47 ~~~vvIiDl~~~~~~~-rrpi---------------~AdsAIMnP~--~~iiALra-g~~lQiFnle~K~klks~~~~e- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPI-RRPI---------------SADSAIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTD- 106 (494)
T ss_dssp CCEEEEEETTSTTSCE-EEEC---------------CCSEEEECSS--SSCEEEEE-TTEEEEEETTTTEEEEEEECSS-
T ss_pred CCeEEEEECCCCCcce-eccc---------------ccceeeeCCC--CcEEEEec-CCeEEEEchHHhhhhcceecCC-
Confidence 3478888888755432 0011 1234567787 66666654 6899999999998888887766
Q ss_pred CceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC--CCCCeEEEEEcCCCCcEEEEEe------cCCeE
Q 017773 143 RRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA--SRSAVCCVEFHPFGSSLVAAGC------ADKKA 214 (366)
Q Consensus 143 ~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~------~d~~i 214 (366)
.|.-=.|-.... | +-.+ +..|+-|++.. ...+.+.+.... ....|..-..+++..-++++|- -.|.+
T Consensus 107 -~VvfWkWis~~~-l-~lVT-~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 107 -DVTFWKWISLNT-V-ALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp -CCCEEEEEETTE-E-EEEC-SSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred -CceEEEecCCCe-E-EEEc-CCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 566666765433 3 3322 45799999973 345666665432 1346777778888744444442 34788
Q ss_pred EEEecCCCCCCeeEeecccCcEEEEEEc-C---CCEEEEEeCC---CcEEEEecCCC---ce------eeee-eccccee
Q 017773 215 YAYDVRKMVDPVLVFDGHRKTVTYIRFL-D---VDTLVTAGTD---GCLKLWNVNDS---RV------IRTY-KGHVNNR 277 (366)
Q Consensus 215 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d---~~i~iwd~~~~---~~------~~~~-~~~~~~~ 277 (366)
.+|..+. +..+.+.+|......+... + ...|+.+... +.+.+-++... .+ +..+ ......-
T Consensus 182 QLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 182 QLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp EEEESTT--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred EEeeccc--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 9999887 4778888888776666554 1 1244444432 78999998543 11 1111 1111111
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.-+++..++.-..++.-+.-|.|++||++++.+++.-++. ...|...+-... .+ =++.....|.|.--.
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--------~~~iF~t~~~~~--~~-Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--------GETIFVTAPHEA--TA-GIIGVNRKGQVLSVC 328 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEEEEEEETT--TT-EEEEEETTCEEEEEE
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--------CCceEEecccCC--CC-cEEEEccCceEEEEE
Confidence 2344445588888888889999999999999999887653 244544444331 22 344444667665544
Q ss_pred ecc
Q 017773 358 GKK 360 (366)
Q Consensus 358 ~~~ 360 (366)
++.
T Consensus 329 v~e 331 (494)
T 1bpo_A 329 VEE 331 (494)
T ss_dssp ECT
T ss_pred Ecc
Confidence 443
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.87 E-value=0.0077 Score=49.59 Aligned_cols=156 Identities=11% Similarity=0.093 Sum_probs=101.9
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC----C--CCCeEEEEE---cCCCCcEEEEEec----
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA----S--RSAVCCVEF---HPFGSSLVAAGCA---- 210 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~~l~~~~~---- 210 (366)
--.++.|.+....++++.-..+.|..||.. .+..... .... . ...+..|.| .|++ .++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~--~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK--TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTT--TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCC--CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 345789988777775666579999999987 3433322 2221 1 124689999 6886 67775432
Q ss_pred ---------CCeEEEEecC---CCCCCeeEee--ccc-----------CcEEEEEEc-CCCEEEEEeCC-CcEEEEecCC
Q 017773 211 ---------DKKAYAYDVR---KMVDPVLVFD--GHR-----------KTVTYIRFL-DVDTLVTAGTD-GCLKLWNVND 263 (366)
Q Consensus 211 ---------d~~i~i~d~~---~~~~~~~~~~--~~~-----------~~v~~~~~~-~~~~l~~~~~d-~~i~iwd~~~ 263 (366)
+..+..||+. ++ +.+.... ... .....++.. +|+..++++.. +.|...+...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 6789999998 55 3443332 111 247888888 89999988888 8877777543
Q ss_pred Cceeeeeeccc------ceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 264 SRVIRTYKGHV------NNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 264 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
. .+..+.... ...+.+++. |+|+.|++....|.|..+|+.+
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~--pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFD--PHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEE--TTTTEEEEESSSSSEEEEECSS
T ss_pred C-EEeeeeecCCCcccccCcceEEEe--CCCCEEEEEcCCCeEEEEcCCC
Confidence 3 233221111 113345555 9999888887799999999874
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.82 E-value=0.0095 Score=49.21 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=111.5
Q ss_pred CcEEEEEcC----CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC----C-----CcEEEeeCCCCCC
Q 017773 111 GRVLGSGDY----DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD----D-----GTMQMWDPRCDGG 177 (366)
Q Consensus 111 ~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~----d-----g~v~~~d~~~~~~ 177 (366)
+.+++.|+. -..+.+||+.+++-...-.....+.-.+++.. +..+++.|+. + ..+.+||+. +.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~--~~ 100 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM--TN 100 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT--TT
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC--CC
Confidence 556666663 24688999887754332111111111122222 3445466665 2 468889987 33
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCCeeEeecccC--cEEEEEEcCCCEEEEE
Q 017773 178 KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDVDTLVTA 250 (366)
Q Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~ 250 (366)
+....-...........+.+ ++ .+++.|+.+ ..+.+||+.+. ....+..... .-.+++..++.+++.|
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~G 175 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVGVAVLNRLLYAVG 175 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred eEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceEEEEECCEEEEEe
Confidence 32222111111112222333 34 677777643 46888998764 1222111111 1112222267777777
Q ss_pred eCC-----CcEEEEecCCCcee--eeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCceEEEEeccc
Q 017773 251 GTD-----GCLKLWNVNDSRVI--RTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEPVWVHDFEP 318 (366)
Q Consensus 251 ~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 318 (366)
+.+ ..+.+||..+.+-. ..+..... ...+.. -++++++.|+.+ ..+.+||+.+.+-...-..+
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p- 250 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRS--GAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK- 250 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccc--cceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-
Confidence 765 45889998776322 22211111 111222 367777888764 46888988766433211111
Q ss_pred ccccCCCCceeeEEEeeccCCCceEEEEeCCC-----CcEEEEEeccc
Q 017773 319 VTAAGSERGFVSSVCWRRVGEDECTLVAGGSD-----GLLHVFVGKKK 361 (366)
Q Consensus 319 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 361 (366)
.....- +++.. ++++++.|+.+ ..+.+||+++.
T Consensus 251 -----~~r~~~-~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 -----HRRSAL-GITVH----QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp -----SCCBSC-EEEEE----TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred -----CCccce-EEEEE----CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 011111 22222 66788888754 35778887653
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.011 Score=48.57 Aligned_cols=186 Identities=17% Similarity=0.161 Sum_probs=94.7
Q ss_pred CcEEEEEcCC-----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC-----cEEEeeCCCCCCcee
Q 017773 111 GRVLGSGDYD-----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG-----TMQMWDPRCDGGKCV 180 (366)
Q Consensus 111 ~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg-----~v~~~d~~~~~~~~~ 180 (366)
+.+++.|+.+ ..+.+||+.+.+-...-.....+.-.+++.. ++ .+++.|+.++ .+.+||+. +.+..
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~--~~~W~ 137 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIK--SNEWF 137 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEECSSCEEEEEEEEETT--TTEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CC-EEEEEcCCCCCccCceEEEEeCC--CCeEe
Confidence 6777777754 3588899887753332222221111222222 34 4446666543 47788887 44333
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEecC-------CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEEEe
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCAD-------KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVTAG 251 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~ 251 (366)
..-...........+.+ ++ .+++.|+.+ ..+.+||+.+. ....+.... ..-.+++..++.+++.|+
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 212 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGG 212 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred ecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECC
Confidence 22221111112222222 34 677777643 45889998764 222221111 111122333777888887
Q ss_pred CC-----CcEEEEecCCCcee--eeeecccceeeeEEEEEecCCCeEEEecCCC-----eEEEEEeecCc
Q 017773 252 TD-----GCLKLWNVNDSRVI--RTYKGHVNNRNFVGLSVWRHGGLLGCGSETN-----QVFVYDVRWGE 309 (366)
Q Consensus 252 ~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 309 (366)
.+ ..+.+||..+.+-. ..+.... ....... .++++++.|+.++ .+.+||+.+.+
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r--~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCR--RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCcc--ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 65 36889998876322 2221111 1111222 3677888887653 48888887654
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.70 E-value=0.015 Score=48.12 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=89.3
Q ss_pred EEEEEcCCCcEEEEeCCCCceeE-eeecCCCCceeeEEeccCCCceEEEecC-----C------CcEEEeeCCCCCCcee
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPIF-ERDEHGGRRVWSVDYSKGDPVLGASGSD-----D------GTMQMWDPRCDGGKCV 180 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~~-----d------g~v~~~d~~~~~~~~~ 180 (366)
+++.|+ ..+..||+.+++-.. .+.....+.-.+++. .++..+ +.|+. . ..+..||.. +.+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iy-v~GG~~~~~~~~~~~~~~~~~~~d~~--~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT-KENQVF-VAGGLFYNEDNKEDPMSAYFLQFDHL--DSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-TTCCEE-EEEEEEECSSCSSSCEEEEEEEEETT--TTEEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE-ECCEEE-EEcCcccCCCCCccccccceEEecCC--CCeEE
Confidence 444555 568999998876433 111111212223333 344444 66662 1 127788887 44332
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEecC--------CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEEE
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCAD--------KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVTA 250 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~ 250 (366)
..-..+.....- +++.. ++ .+++.|+.+ ..+.+||+.+. .-..+.... ..-.+++..++.+++.|
T Consensus 81 ~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~G 155 (315)
T 4asc_A 81 GMPPLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVLSHMDLVYVIG 155 (315)
T ss_dssp ECCCBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred ECCCCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEEEECCEEEEEe
Confidence 221111111111 22222 33 677777742 45889998764 122221111 11112222366777888
Q ss_pred eC-C-----CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCCC-----eEEEEEeecCce
Q 017773 251 GT-D-----GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN-----QVFVYDVRWGEP 310 (366)
Q Consensus 251 ~~-d-----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 310 (366)
+. + ..+.+||..+.+- +..+... .....+.. -++++++.|+.++ .+.+||+.+.+-
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTA--RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCc--hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 76 2 3688999887632 2222211 11111222 3677777777654 477888776643
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=0.019 Score=48.49 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=115.5
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC--CCcEEEEEcCC
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT--SGRVLGSGDYD 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d 120 (366)
.....++|.|+|+++++ ..+|.|++++ ++.. . .+.... ...........|+|+|+. ++.+.++-...
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~---~~~~~~----v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-S---TYAELS----VYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-E---EEEECC----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-c---Eeecce----EeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 34689999999986555 5679999988 2221 1 111000 011112457899999851 13444443322
Q ss_pred -----CcEEEEeCCCCc-----eeEe-eec--CCCCceeeEEeccCCCceEEEecC-------------CCcEEEeeCCC
Q 017773 121 -----GVVMEYDLEKKV-----PIFE-RDE--HGGRRVWSVDYSKGDPVLGASGSD-------------DGTMQMWDPRC 174 (366)
Q Consensus 121 -----g~i~iw~~~~~~-----~~~~-~~~--~~~~~v~~i~~~~~~~~l~~~~~~-------------dg~v~~~d~~~ 174 (366)
+.|..++...+. .+.. +.. ........++|.|+|..+ ++.+. .|.|.-++..
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Ly-v~~G~~~~~~~~~d~~~~~g~I~ri~~d- 177 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLY-VTTGEVYERELAQDLASLGGKILRLTPE- 177 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEE-EECCCTTCGGGGGCTTCSSSEEEEECTT-
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEE-EEECCCCCCccccCCCCCceEEEEEcCC-
Confidence 568888876431 1111 321 111134689999998654 44322 1455555544
Q ss_pred CCC------------ceeEeecCCCCCCCeEEEEEcC-CCCcEEEEEecCCe--------EEEEecCC------------
Q 017773 175 DGG------------KCVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCADKK--------AYAYDVRK------------ 221 (366)
Q Consensus 175 ~~~------------~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~--------i~i~d~~~------------ 221 (366)
.. .....+.. ++ .....++|+| ++ .++++-..... |.+...-.
T Consensus 178 -G~~p~~npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g-~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~ 253 (352)
T 2ism_A 178 -GEPAPGNPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTG-ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGN 253 (352)
T ss_dssp -SSBCTTCTTTTCTTSCTTEEEE-CC-SEECCCEECTTTC-CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCC
T ss_pred -CCCCCCCcccCCCCCCccEEEE-cC-CCcccEEEECCCC-CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCC
Confidence 10 00011110 11 2467789999 55 55555333232 33332111
Q ss_pred ---CCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCce------eeeeecccceeeeEEEEEecCCCeEE
Q 017773 222 ---MVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRV------IRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 222 ---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
...+...+..| .....++|.++.++++.-..+.|...++..... ...+......+..+++. |||.+++
T Consensus 254 ~~~~~~p~~~~~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~--pdG~lyv 330 (352)
T 2ism_A 254 DPRYRDPLYFWPQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVG--PDGALYV 330 (352)
T ss_dssp CTTSCCCSEECTTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEEC--TTSCEEE
T ss_pred CCCCcCCeEecCCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEEC--CCCcEEE
Confidence 01233333222 345677777777777766777788777764331 11221111233344444 8887666
Q ss_pred Ee
Q 017773 293 CG 294 (366)
Q Consensus 293 ~~ 294 (366)
+.
T Consensus 331 ~~ 332 (352)
T 2ism_A 331 TT 332 (352)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.67 E-value=0.017 Score=47.61 Aligned_cols=187 Identities=10% Similarity=0.034 Sum_probs=96.3
Q ss_pred CcEEEEEcCC----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC------CcEEEeeCCCCCCcee
Q 017773 111 GRVLGSGDYD----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD------GTMQMWDPRCDGGKCV 180 (366)
Q Consensus 111 ~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------g~v~~~d~~~~~~~~~ 180 (366)
+.+++.|+.+ ..+.+||+.+++-...-.....+.-.+++.. ++ .+++.|+.+ ..+.+||+. +.+..
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~--~~~W~ 131 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTR--TESWH 131 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETT--TTEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCC--CCceE
Confidence 6677777754 6788999988754333222221111122222 34 454677654 458899988 44333
Q ss_pred EeecCCCCCCCeEEEEEcCCCCcEEEEEec---------CCeEEEEecCCCCCCeeEeecccC--cEEEEEEcCCCEEEE
Q 017773 181 STVQPSASRSAVCCVEFHPFGSSLVAAGCA---------DKKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDVDTLVT 249 (366)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~ 249 (366)
..-........-..+.+ ++ .+++.|+. -..+.+||+.+. ....+..... .-.++...++.+++.
T Consensus 132 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp EECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECCEEEEE
Confidence 22221111112222222 34 67777764 345889998775 2222221111 111222236777777
Q ss_pred EeCC-----CcEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCce
Q 017773 250 AGTD-----GCLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEP 310 (366)
Q Consensus 250 ~~~d-----~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 310 (366)
|+.+ ..+.+||+.+.+ .+..+..... ...+.. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV--TVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSCCBS--CCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc--ceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 7754 358899988763 2222221111 111222 367788888754 4688888876543
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.63 E-value=0.024 Score=48.37 Aligned_cols=238 Identities=15% Similarity=0.146 Sum_probs=145.0
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEE
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEY 126 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 126 (366)
+.-.+|..+.+|.-. ..++.|||+++..... ...- +.+|.-=.|-.+ +.|+-.+ +..|+-|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klk---s~~~-----------~e~VvfWkWis~---~~l~lVT-~taVyHW 130 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---AHTM-----------TDDVTFWKWISL---NTVALVT-DNAVYHW 130 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---EEEC-----------SSCCCEEEEEET---TEEEEEC-SSEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---ceec-----------CCCceEEEecCC---CeEEEEc-CCeeEEe
Confidence 455788888887765 6799999998765433 1111 134555566653 3555544 5679999
Q ss_pred eCCCC-ceeEeeecCC---CCceeeEEeccCCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 127 DLEKK-VPIFERDEHG---GRRVWSVDYSKGDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 127 ~~~~~-~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
+++.. .+...+..|. +..|..-..+++.+.++++|- -.|.+.+|..+ .+..+.++ +|......+.
T Consensus 131 si~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e---r~~sQ~ie--Ghaa~F~~~~ 205 (494)
T 1bpo_A 131 SMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQPIE--GHAASFAQFK 205 (494)
T ss_dssp ESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST---TCCEEEEC--CSEEEEEEEE
T ss_pred cccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc---ccccchhe--eeeeeeEEEe
Confidence 99753 4555555443 236777778888888866654 24778999987 44455555 5532332222
Q ss_pred EcC--CCCcEEEEEecC---CeEEEEecCCC--CC-Ce-----eEeec---ccCcEEEEEEc-CCCEEEEEeCCCcEEEE
Q 017773 197 FHP--FGSSLVAAGCAD---KKAYAYDVRKM--VD-PV-----LVFDG---HRKTVTYIRFL-DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 197 ~~~--~~~~~l~~~~~d---~~i~i~d~~~~--~~-~~-----~~~~~---~~~~v~~~~~~-~~~~l~~~~~d~~i~iw 259 (366)
... ....+++.+... +.+++.++... .. +. ..+.. ..+--.++..+ .-..++.-+.-|.|.+|
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ly 285 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEE
Confidence 221 111344444332 78999998543 11 11 11111 13344567777 66788888899999999
Q ss_pred ecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 260 NVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
|+.++.++..-+-....+...+-. ....=++.....|.|.--.++....
T Consensus 286 DleTgt~i~~nrIs~~~iF~t~~~--~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 286 DLETGTCIYMNRISGETIFVTAPH--EATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE--TTTTEEEEEETTCEEEEEEECTTTH
T ss_pred ecccceeeeeecccCCceEEeccc--CCCCcEEEEccCceEEEEEEccccc
Confidence 999999988877666665443333 4444444445777777766665443
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.62 E-value=0.02 Score=47.16 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=119.5
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEe-eec-----CCCCceeeEEe---ccCCCceEEEec--------
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFE-RDE-----HGGRRVWSVDY---SKGDPVLGASGS-------- 162 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~-----~~~~~v~~i~~---~~~~~~l~~~~~-------- 162 (366)
-.++.|++. .+.++++.-..++|..|+...+..... +.. .....+..|.| .|+++.+ ++..
T Consensus 15 PE~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~-vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLF-AVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEE-EEEEETTTTCTT
T ss_pred CcCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEE-EEEccccccccc
Confidence 567899886 255556665899999999986543322 221 11114678999 5775554 5433
Q ss_pred -----CCCcEEEeeCCC-CCCceeEeecCCC-----------CCCCeEEEEEcCCCCcEEEEEecC-CeEEEEecCCCCC
Q 017773 163 -----DDGTMQMWDPRC-DGGKCVSTVQPSA-----------SRSAVCCVEFHPFGSSLVAAGCAD-KKAYAYDVRKMVD 224 (366)
Q Consensus 163 -----~dg~v~~~d~~~-~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~ 224 (366)
.+..|..+|+.- .+++.+....+.. .......++..++| +..++++.. +.|..++....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~-- 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK-- 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC--
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC--
Confidence 257789999860 1233333332210 11258899999999 788888888 88888877653
Q ss_pred CeeEee------cccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCce--eeeee--cc---cceeeeEEEEEecCCCe
Q 017773 225 PVLVFD------GHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRV--IRTYK--GH---VNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 225 ~~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~---~~~~~~~~~~~~~~~~~ 290 (366)
.+..+. ......+.|+++ +++.|++....|.+..+|+.+... +. .. +. -.....+ +..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgi-lp~~~~G~v 247 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKI-VTVPVGNES 247 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEE-EEEEETTEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccc-cccccCCEE
Confidence 222221 111236689998 888888887799999999885432 21 11 21 0111222 222247777
Q ss_pred -EEEecCCCeEEEEEeec
Q 017773 291 -LGCGSETNQVFVYDVRW 307 (366)
Q Consensus 291 -l~~~~~dg~i~iwd~~~ 307 (366)
|++....+.+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 44555566555555443
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.60 E-value=0.016 Score=47.83 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=94.0
Q ss_pred CcEEEEEcC----C-----CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-----CcEEEeeCCCCC
Q 017773 111 GRVLGSGDY----D-----GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-----GTMQMWDPRCDG 176 (366)
Q Consensus 111 ~~~l~~~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----g~v~~~d~~~~~ 176 (366)
+.+++.|+. + ..+.+||+.+.+-...-.....+.-.+++.. ++ .+++.|+.+ ..+.+||+. +
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~--~ 146 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPE--R 146 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETT--T
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCC--C
Confidence 667777765 2 4688899887653332211111111122222 34 454666543 358889987 3
Q ss_pred CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-----CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcCCCEEEE
Q 017773 177 GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-----KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLDVDTLVT 249 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~ 249 (366)
.+....-........-..+.+ ++ .+++.|+.+ ..+.+||+.+. ....+.... ..-.+++..++.+++.
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEE
Confidence 332222121111112223333 34 677777754 45889998764 222211111 1111222236777888
Q ss_pred EeCC-----CcEEEEecCCCcee--eeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCce
Q 017773 250 AGTD-----GCLKLWNVNDSRVI--RTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGEP 310 (366)
Q Consensus 250 ~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 310 (366)
|+.+ ..+.+||+.+.+-. ..+..... ...... -++++++.|+.+ ..+.+||+.+.+-
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--ALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCcc--ceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 8765 46899998876322 22221111 111222 367788888754 3577788766543
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.59 E-value=0.026 Score=47.63 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=119.0
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCce--eEeee--cCCCCceeeEEeccC---CCceEEEecCC-----Cc
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVP--IFERD--EHGGRRVWSVDYSKG---DPVLGASGSDD-----GT 166 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~~d-----g~ 166 (366)
....++|.|+ |+++++ ..+|.|.+++ .++. +..+. .........|+++|+ +..+.++-... +.
T Consensus 32 ~P~~ia~~pd--G~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPD--GGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTT--SCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCC--CeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 3578999998 886555 4569999998 3332 22221 111226889999998 56664544432 56
Q ss_pred EEEeeCCCCCCc-----ee-EeecC-CCCCCCeEEEEEcCCCCcEEEEEec-------------CCeEEEEecCCC----
Q 017773 167 MQMWDPRCDGGK-----CV-STVQP-SASRSAVCCVEFHPFGSSLVAAGCA-------------DKKAYAYDVRKM---- 222 (366)
Q Consensus 167 v~~~d~~~~~~~-----~~-~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~---- 222 (366)
|..++.. ... .+ ..+.. .........++|.|+| .++++-+. .|.|.-++....
T Consensus 107 v~r~~~~--~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHL--GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEC--SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeC--CCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 7788776 221 11 11221 1111145689999998 55555322 256777766541
Q ss_pred --------CCCeeEeecccCcEEEEEEc--CCCEEEEEeCCCcE------EEEecCCCc------------------eee
Q 017773 223 --------VDPVLVFDGHRKTVTYIRFL--DVDTLVTAGTDGCL------KLWNVNDSR------------------VIR 268 (366)
Q Consensus 223 --------~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i------~iwd~~~~~------------------~~~ 268 (366)
........++. ....++|+ ++.++++-.....+ .+.-+..+. ++.
T Consensus 184 npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 01111112232 24567787 34444433322221 122222221 222
Q ss_pred eeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE-EEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 269 TYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW-VHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
.+..|.. ...+++ .+|.++++.-..+.|...+++...... ...... .+ .....+..+++.| ||.++++.
T Consensus 263 ~~~~~~a-p~G~~~---~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~--~~-~~~~rp~~v~~~p---dG~lyv~~ 332 (352)
T 2ism_A 263 FWPQGFP-PGNLAF---FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVET--AL-SGFGRLREVQVGP---DGALYVTT 332 (352)
T ss_dssp ECTTCCC-EEEEEE---ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE--EE-ESSCCEEEEEECT---TSCEEEEE
T ss_pred ecCCCCC-CcceEE---ECCEEEEEECCCCEEEEEEECCCCcceeecchhe--ec-ccCCCeeEEEECC---CCcEEEEE
Confidence 3322222 223444 467777777777888888887543211 000000 00 1135689999999 88776665
Q ss_pred C
Q 017773 348 G 348 (366)
Q Consensus 348 ~ 348 (366)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 317
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.58 E-value=0.025 Score=47.18 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=115.1
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeec---CCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE---HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC 174 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~ 174 (366)
..+.++.|.+. +..+++| .+|.| +...+.++.-..... .....+.+|.+.+ +.+++. +..+.|.. ..
T Consensus 36 ~~~~~v~~~~~--~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~-g~~g~i~~--S~- 105 (327)
T 2xbg_A 36 ATILDMSFIDR--HHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIV-GEPPIMLH--TT- 105 (327)
T ss_dssp SCEEEEEESSS--SCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEE-EETTEEEE--ES-
T ss_pred CcEEEEEECCC--CcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEE-ECCCeEEE--EC-
Confidence 35889998876 6777755 46655 334444432222211 1123788999976 344344 44564443 22
Q ss_pred CCCceeEeecCC-CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCee-EeecccCcEEEEEEc-CCCEEEEEe
Q 017773 175 DGGKCVSTVQPS-ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVL-VFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 175 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
+.++.-..+... .....+..+.+.+++ .+++++ .++.|+. .....+.-. ........+..+.+. ++.+++.+
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g- 180 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR--TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS- 180 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE--ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-
T ss_pred CCCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE--EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-
Confidence 123333333221 122357778877665 566555 4565432 222212222 223445678888888 66666555
Q ss_pred CCCcEEE-Eec--CCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCce
Q 017773 252 TDGCLKL-WNV--NDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGF 328 (366)
Q Consensus 252 ~d~~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
.+|.+.. .|- .+.+.+.. .....+..+.+ .+++.+++.+ .+|.+++.+.+.++.-..+..+. ..+...
T Consensus 181 ~~G~~~~S~d~gG~tW~~~~~--~~~~~~~~~~~--~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~----~~~~~~ 251 (327)
T 2xbg_A 181 SRGSFYSTWEPGQTAWEPHNR--TTSRRLHNMGF--TPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPL----RRNSVG 251 (327)
T ss_dssp TTSSEEEEECTTCSSCEEEEC--CSSSCEEEEEE--CTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTT----SSCCSC
T ss_pred CCCcEEEEeCCCCCceeECCC--CCCCccceeEE--CCCCCEEEEe-CCceEEEecCCCCCeeEeccCCc----ccCCcc
Confidence 4454433 342 23333321 22233444444 4888766554 56877765422233221111110 012235
Q ss_pred eeEEEeeccCCCceEEEEeCCCCcE
Q 017773 329 VSSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 329 v~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
+.++++.| ++..++++. +|.|
T Consensus 252 ~~~v~~~~---~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 252 FLDLAYRT---PNEVWLAGG-AGAL 272 (327)
T ss_dssp EEEEEESS---SSCEEEEES-TTCE
T ss_pred eEEEEecC---CCEEEEEeC-CCeE
Confidence 88899987 666666654 6656
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.52 E-value=0.03 Score=46.81 Aligned_cols=239 Identities=11% Similarity=0.048 Sum_probs=123.6
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCCcEEEEE--
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSGRVLGSG-- 117 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~-- 117 (366)
-.....|+|.|+|+++++--..|.|++++..++... .+.... ............|+++|+ .++.+.++-
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~----~v~~~~---~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT----ELGEVP---GVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----EEEECT---TCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe----eecccC---ceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 345689999999997777644899998875443221 110000 011122346889999984 124444432
Q ss_pred cCCCcEEEEeCCCC----------ceeE-eeecCCCCceeeEEeccCCCceEEEec------------CCCcEEEeeCCC
Q 017773 118 DYDGVVMEYDLEKK----------VPIF-ERDEHGGRRVWSVDYSKGDPVLGASGS------------DDGTMQMWDPRC 174 (366)
Q Consensus 118 ~~dg~i~iw~~~~~----------~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~------------~dg~v~~~d~~~ 174 (366)
..++.|.-|.+..+ +.+. .+.......-..|.|.|++..++.+|. ..|.|.-.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d- 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD- 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-
Confidence 23456666665541 1111 122111114567999999876633332 12444444543
Q ss_pred CCCc--------eeEeecCCCCCCCeEEEEEcCCCCcEEEEE-ecCCeEEEEecCCC-----------------CCCeeE
Q 017773 175 DGGK--------CVSTVQPSASRSAVCCVEFHPFGSSLVAAG-CADKKAYAYDVRKM-----------------VDPVLV 228 (366)
Q Consensus 175 ~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~-----------------~~~~~~ 228 (366)
+. ....+. .++ .....++|+|+| .++++- +.++.-.|--+..+ ..++..
T Consensus 183 --G~ip~~nPf~~~~i~a-~G~-RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 183 --GEPAPGNPFPGSPVYS-YGH-RNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp --SSBCTTCSSTTCCEEE-BCC-SBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred --CCccCCCCCCCCeEEe-eCC-CCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 11 001111 122 245689999987 555443 22332222222221 112333
Q ss_pred eecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCce----eeeeecccceeeeEEEEEecCCCeEEEec
Q 017773 229 FDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRV----IRTYKGHVNNRNFVGLSVWRHGGLLGCGS 295 (366)
Q Consensus 229 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (366)
+..+......++|.++..++..-..+.|....+..... ...+.+....+..+... |||.++++-.
T Consensus 258 ~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~--pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPA--GGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEE--ETTEEEEEEC
T ss_pred cCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEEC--CCCcEEEEEc
Confidence 33333456788887777777776677777777655432 12233333445556666 8887766543
No 319
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.45 E-value=0.036 Score=45.89 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=87.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEe-eecCCCCceeeEEeccCCCceEEEecC----CC-------cEEEeeCCCCCCce
Q 017773 112 RVLGSGDYDGVVMEYDLEKKVPIFE-RDEHGGRRVWSVDYSKGDPVLGASGSD----DG-------TMQMWDPRCDGGKC 179 (366)
Q Consensus 112 ~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~~----dg-------~v~~~d~~~~~~~~ 179 (366)
.+++.|+. .+..||+.+++-... ......+.-.+++ ..++. +++.|+. ++ .+..||.. +.+.
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~--~~~W 90 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNV--SSEW 90 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSC-EEEEESSCC-------CCCBEEEEEETT--TTEE
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCE-EEEECCcccCccccCCCccccEEEEeCC--CCcE
Confidence 34445543 378999988764431 1111111222232 23344 4466662 12 17778887 3333
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCcEEEEEecC-------CeEEEEecCCCCCCeeEeecccCcE--EEEEEcCCCEEEEE
Q 017773 180 VSTVQPSASRSAVCCVEFHPFGSSLVAAGCAD-------KKAYAYDVRKMVDPVLVFDGHRKTV--TYIRFLDVDTLVTA 250 (366)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~ 250 (366)
...-..+........+.+ ++ .+++.|+.+ ..+.+||+.+. .-..+.....+. .+++..++.+++.|
T Consensus 91 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~G 165 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNVISHNGMIYCLG 165 (318)
T ss_dssp EECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEEEEETTEEEEEC
T ss_pred EECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccccEEEEECCEEEEEc
Confidence 222111111112222223 34 677777754 35788888764 222221111111 11222367777777
Q ss_pred eCC------CcEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCC-----CeEEEEEeecCc
Q 017773 251 GTD------GCLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET-----NQVFVYDVRWGE 309 (366)
Q Consensus 251 ~~d------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 309 (366)
+.+ ..+.+||..+.+- +..+..... ...+.. -++++++.|+.+ ..+.+||+.+.+
T Consensus 166 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS--MFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CEESSSCBCCCEEEEETTTTEEEEECCCSSCCB--SCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCCCCCCccceEEEEcCCCCEEEECCCCCCCcc--cceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 642 3588999887632 222211111 111122 367777777643 346778877654
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0016 Score=54.21 Aligned_cols=195 Identities=12% Similarity=0.063 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEec--cCCCceEEEe-cCCCcEEEeeCCCCCCceeEeecCCC
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYS--KGDPVLGASG-SDDGTMQMWDPRCDGGKCVSTVQPSA 187 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~ 187 (366)
+..++.++.||.|.-.|.++|+....+......++....-. +.+..+++.. +.||.|..++.. ++.....+....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~--~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH--QGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT--TEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC--CCcEEeeecccc
Confidence 45788889999999999999998888766511122221110 1122342443 689999999987 554443333211
Q ss_pred --CCCCeEE---EEE-c----CCCCcEEEEEecCCeEEEEecCCCCCCeeEeeccc--Cc-----EEEEE---E---cCC
Q 017773 188 --SRSAVCC---VEF-H----PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHR--KT-----VTYIR---F---LDV 244 (366)
Q Consensus 188 --~~~~i~~---~~~-~----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~-----v~~~~---~---~~~ 244 (366)
...++.. ... . ..+ ..+++|+.+|.++..|++++ +.+..+.... .. ..|.. + ..+
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNG-EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTC-CEEEEESTTCBCC--------------------C
T ss_pred ceeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCC-cEEEEEecCCCcccccccccccccccccccccCC
Confidence 1112221 000 0 023 58899999999999999998 5666654321 10 00111 1 123
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeee-----cccceeee-EEEEEecCCCeEEEecCCCeEEEEEeecCceEE
Q 017773 245 DTLVTAGTDGCLKLWNVNDSRVIRTYK-----GHVNNRNF-VGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW 312 (366)
Q Consensus 245 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 312 (366)
..++.+..+..+.+.+ ++++ +-.+. ........ .....+.++.+ +.++.||.|..+|..+|+.++
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677777777777766 4453 22221 00000000 00000124555 446778888888888888776
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.42 E-value=0.044 Score=46.25 Aligned_cols=233 Identities=15% Similarity=0.066 Sum_probs=116.8
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCCcEEEEEcC-
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSGRVLGSGDY- 119 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~- 119 (366)
.....++|.|+|+++++ ..+|.|++++. ++. .....+. ...........|+++|+ .++.+.++-..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~~-------v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~ 97 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASFD-------VANVGEAGLLGLALHPEFPKKSWVYLYASYF 97 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEECC-------CCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeeccc-------eeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence 34689999999985555 56799998863 222 1111110 00111245789999984 11444444332
Q ss_pred --C----CcEEEEeCCCC-------cee-EeeecCCCCceeeEEeccCCCceEEEecC-------------CCcEEEeeC
Q 017773 120 --D----GVVMEYDLEKK-------VPI-FERDEHGGRRVWSVDYSKGDPVLGASGSD-------------DGTMQMWDP 172 (366)
Q Consensus 120 --d----g~i~iw~~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-------------dg~v~~~d~ 172 (366)
+ ..|..++.... +.+ ..+..........++|.|++..+ ++.+. .|.|.-++.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly-vt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY-ITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE-EECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEE-EEECCCCCCccccCCCCCCeEEEEEcC
Confidence 3 56777776654 111 11221111134679999999755 44322 244555554
Q ss_pred CCCCCc--------eeEeecCCCCCCCeEEEEEcC-CCCcEEEEEecCC---eEEEEecCC---------------CCCC
Q 017773 173 RCDGGK--------CVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCADK---KAYAYDVRK---------------MVDP 225 (366)
Q Consensus 173 ~~~~~~--------~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~---~i~i~d~~~---------------~~~~ 225 (366)
. ++ ....+.. ++ .....++|+| ++ .++++-.... .|.+...-. ...+
T Consensus 177 d---G~~p~~npf~~~~i~a~-G~-rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 250 (354)
T 3a9g_A 177 E---GRPPADNPFPNSPIWSY-GH-RNPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDP 250 (354)
T ss_dssp T---SCCCTTSSSTTCCEEEE-CC-SCCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred C---CCCCCCCCCCCCcEEEE-cc-CCcceEEEeCCCC-CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCC
Confidence 3 21 0011110 12 2456899999 55 5555532221 233332111 0012
Q ss_pred eeEeecccCcEEEEEE-------c-CCCEEEEEeCCCcEEEEecCCC-cee--eeee-cccceeeeEEEEEecCCCeEEE
Q 017773 226 VLVFDGHRKTVTYIRF-------L-DVDTLVTAGTDGCLKLWNVNDS-RVI--RTYK-GHVNNRNFVGLSVWRHGGLLGC 293 (366)
Q Consensus 226 ~~~~~~~~~~v~~~~~-------~-~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~ 293 (366)
+..+.........++| . ++.++++.-..+.|...++... +.. ..+. +....+..+++. |||.+.++
T Consensus 251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~--pDG~lyv~ 328 (354)
T 3a9g_A 251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID--DDGGILIS 328 (354)
T ss_dssp SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC--TTSCEEEE
T ss_pred EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC--CCCcEEEE
Confidence 3333112235677888 2 5667777667778888888753 221 2222 112233444444 88876665
Q ss_pred ec
Q 017773 294 GS 295 (366)
Q Consensus 294 ~~ 295 (366)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.39 E-value=0.039 Score=46.53 Aligned_cols=231 Identities=11% Similarity=0.021 Sum_probs=107.2
Q ss_pred CcEEEEEcC-CCcEEEEeCCC--CceeEeeecC-CCCceeeEEeccCCCceEEEecC-C---------CcEEEeeCCCCC
Q 017773 111 GRVLGSGDY-DGVVMEYDLEK--KVPIFERDEH-GGRRVWSVDYSKGDPVLGASGSD-D---------GTMQMWDPRCDG 176 (366)
Q Consensus 111 ~~~l~~~~~-dg~i~iw~~~~--~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~~-d---------g~v~~~d~~~~~ 176 (366)
+.+++.|+. ...+.++|+.. .+-...-... ..+.-.+++.. ++ .+++.|+. + ..+.+||+. +
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~--~ 95 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPK--T 95 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT-EEEEECCEEECTTSCEEECCCEEEEETT--T
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC-EEEEEcCCCCCCCccceeeccEEEEeCC--C
Confidence 666676654 35688899874 3222111111 11111222222 33 45466665 2 468899988 4
Q ss_pred CceeEeecCC-CCCCCeEEEEEcCCCCcEEEEEecC---------------------------------------CeEEE
Q 017773 177 GKCVSTVQPS-ASRSAVCCVEFHPFGSSLVAAGCAD---------------------------------------KKAYA 216 (366)
Q Consensus 177 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d---------------------------------------~~i~i 216 (366)
.+-...-... .......++. .++ ++++.|+.+ ..+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNG-KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETT-EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECC-EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 3322221111 1111222222 344 788888754 57899
Q ss_pred EecCCCCCCeeEeeccc--CcE-EEEEEcCCCEEEEEeC------CCcEEEEec--CCC--ceeeeeecccceeeeEEEE
Q 017773 217 YDVRKMVDPVLVFDGHR--KTV-TYIRFLDVDTLVTAGT------DGCLKLWNV--NDS--RVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 217 ~d~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~l~~~~~------d~~i~iwd~--~~~--~~~~~~~~~~~~~~~~~~~ 283 (366)
||+.+. .-..+..-. ... .+++..++.+++.|+. ...+.+||+ .+. ..+..+..........+..
T Consensus 173 yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 173 FDPSTQ--QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EETTTT--EEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EeCCCC--cEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 998775 222221111 111 2333336677777764 235777876 333 2222221111111111222
Q ss_pred EecCCCeEEEecCC----------------------CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCc
Q 017773 284 VWRHGGLLGCGSET----------------------NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE 341 (366)
Q Consensus 284 ~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 341 (366)
.++++++.|+.+ ..+.+||+.+.+-...-..+. ....-.++. . ++
T Consensus 251 --~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~------~r~~~~~~~--~---~~ 317 (357)
T 2uvk_A 251 --SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ------GRAYGVSLP--W---NN 317 (357)
T ss_dssp --ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS------CCBSSEEEE--E---TT
T ss_pred --ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC------CcccceeEE--e---CC
Confidence 467777887732 257788887654333222211 111111222 2 66
Q ss_pred eEEEEeCCCC------cEEEEEecccCC
Q 017773 342 CTLVAGGSDG------LLHVFVGKKKPL 363 (366)
Q Consensus 342 ~~l~s~~~dg------~i~iw~~~~~~l 363 (366)
++++.||.++ .|.+++++++++
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 7888888653 355567776654
No 323
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.35 E-value=0.1 Score=49.05 Aligned_cols=269 Identities=11% Similarity=0.074 Sum_probs=140.2
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|+++.-..+| +|..|..+| +..||-..... ...... .....|.++.-..+ + .|..|+.+|
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~------~~~~~~------~~~~~i~~i~~d~~--g-~lWigT~~G 83 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQ------HFTYGE------NNNTRIYCGVIIDN--T-YLYMGTDNG 83 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEE------CSCTTS------TTSSCEEEEEEETT--T-EEEEEETTE
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEE------EEccCC------CCCceEEEEEEcCC--C-cEEEEeCCC
Confidence 5679999999888 566667777 55566322110 000000 01235888877665 5 555666555
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeec---CCCCCCCeEEEEEc
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQ---PSASRSAVCCVEFH 198 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~ 198 (366)
+..||..+.+........ ...|.++.. .++ .+ ..++.+ -+..+|.. +.+. ..+. .......|.++...
T Consensus 84 -l~~yd~~~~~f~~~~~~~-~~~i~~i~~-~~g-~l-Wigt~~-Gl~~~~~~--~~~~-~~~~~~~~~l~~~~i~~i~~d 154 (758)
T 3ott_A 84 -ILVYNYRADRYEQPETDF-PTDVRTMAL-QGD-TL-WLGALN-GLYTYQLQ--SRKL-TSFDTRRNGLPNNTIYSIIRT 154 (758)
T ss_dssp -EEEEETTTTEECCCSCCC-CSCEEEEEE-ETT-EE-EEEETT-EEEEEETT--TCCE-EEECHHHHCCSCSCEEEEEEC
T ss_pred -eEEEeCCCCEEECcccCC-CceEEEEEe-cCC-cE-EEEcCC-cceeEeCC--CCeE-EEeccCCCCcCCCeEEEEEEc
Confidence 788998776433211111 125776654 344 44 445555 58888876 3332 2221 11122468888888
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCCCCeeEeecc------cCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCceeeeee
Q 017773 199 PFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGH------RKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSRVIRTYK 271 (366)
Q Consensus 199 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 271 (366)
++| .+.+ |+.+ -+..+|..+. ....+... ...|.++... ++..|..++. +-+..+|..+++......
T Consensus 155 ~~g-~lWi-gt~~-Gl~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 155 KDN-QIYV-GTYN-GLCRYIPSNG--KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp TTC-CEEE-EETT-EEEEEETTTT--EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE
T ss_pred CCC-CEEE-EeCC-CHhhCccCCC--ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC
Confidence 877 4444 4444 5778887654 22222111 1247777776 5565555554 458888877664322111
Q ss_pred cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCC
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDG 351 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 351 (366)
.....|..+... ++|.+.+. +.+ -+.+++..+++.. .+.........-....|.++.... +|.+-+ |+..|
T Consensus 229 l~~~~i~~i~~d--~~g~lWig-T~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~---~g~lWi-GT~~G 299 (758)
T 3ott_A 229 FHNNSIKSLALD--GNGDLLAG-TDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQ---EHNIWL-GTDYG 299 (758)
T ss_dssp EEEEEEEEEEEC--TTCCEEEE-ETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECT---TCCEEE-EESSS
T ss_pred CCCCeEEEEEEc--CCCCEEEE-eCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcC---CCCEEE-EeCCc
Confidence 112234444333 66665554 444 4778887655432 221111000011234588887765 554444 33445
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.28 E-value=0.064 Score=45.21 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=116.8
Q ss_pred ceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCCcEEEEEcC-
Q 017773 44 SIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSGRVLGSGDY- 119 (366)
Q Consensus 44 ~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~- 119 (366)
....|+|.|+|+ +++ +...|.|++++.... .... +.... ............|+++|+ .++.+.++-..
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~-~~~~---~~~~~---~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKG-LSAP---LSGVP---DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETTTE-ECCC---CBSCC---CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCc-eeeE---ecCCc---ccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 468999999998 555 456899999874321 1110 00000 001111245789999983 11555554332
Q ss_pred ------CCcEEEEeCCCC--c--eeE----eeec--CCCCceeeEEeccCCCceEEEecC------------CCcEEEee
Q 017773 120 ------DGVVMEYDLEKK--V--PIF----ERDE--HGGRRVWSVDYSKGDPVLGASGSD------------DGTMQMWD 171 (366)
Q Consensus 120 ------dg~i~iw~~~~~--~--~~~----~~~~--~~~~~v~~i~~~~~~~~l~~~~~~------------dg~v~~~d 171 (366)
...|..+++... . ... .+.. ........++|.|++..++..|.. .|.|.-++
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666666432 1 111 1111 000124679999998655333322 24566666
Q ss_pred CCCCCCc------------eeEeecCCCCCCCeEEEEEcC-CCCcEEEEEec-CCeEEEEecCCC---------------
Q 017773 172 PRCDGGK------------CVSTVQPSASRSAVCCVEFHP-FGSSLVAAGCA-DKKAYAYDVRKM--------------- 222 (366)
Q Consensus 172 ~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~-d~~i~i~d~~~~--------------- 222 (366)
.. ... ....+.. ++ .....++|+| .| .++++-.. ++.=.|.-+..+
T Consensus 171 ~d--G~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~ 245 (353)
T 2g8s_A 171 DQ--GEIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYS 245 (353)
T ss_dssp TT--SCCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTT
T ss_pred CC--CCCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCC
Confidence 54 110 1111111 11 2578899999 55 55544221 111122211111
Q ss_pred ---------------CCCeeEeecccCcEEEEEEc--------CCCEEEEEeCCCcEEEEecCCCceeee--ee-cccce
Q 017773 223 ---------------VDPVLVFDGHRKTVTYIRFL--------DVDTLVTAGTDGCLKLWNVNDSRVIRT--YK-GHVNN 276 (366)
Q Consensus 223 ---------------~~~~~~~~~~~~~v~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~-~~~~~ 276 (366)
..++..+..| .....+.|. ++.++++.-..+.|...++..++.... +. .....
T Consensus 246 ~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 324 (353)
T 2g8s_A 246 GFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQR 324 (353)
T ss_dssp SSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCC
T ss_pred CCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCc
Confidence 0122223322 356677774 256777776778888888776543322 11 11123
Q ss_pred eeeEEEEEecCCCeEEEec-CCCe
Q 017773 277 RNFVGLSVWRHGGLLGCGS-ETNQ 299 (366)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~-~dg~ 299 (366)
+..+++ .|||.++++.. .+|.
T Consensus 325 p~~v~~--~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 325 IRDVRT--GPDGYLYVLTDESSGE 346 (353)
T ss_dssp EEEEEE--CTTSCEEEEECSTTEE
T ss_pred eeEEEE--CCCCcEEEEEeCCCCE
Confidence 334444 48988666533 3443
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.24 E-value=0.072 Score=44.92 Aligned_cols=233 Identities=13% Similarity=0.006 Sum_probs=121.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-eeEeee--cCCCCceeeEEeccC---CCceEEEecC---C----C
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-PIFERD--EHGGRRVWSVDYSKG---DPVLGASGSD---D----G 165 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~~---d----g 165 (366)
....|+|.|+ |+++++ ..+|.|++++. .++ .+..+. .........|+++|+ +..|.++-+. + +
T Consensus 30 ~P~~ia~~pd--G~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGG--GRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEET--TEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCC--CeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 4678999998 875555 45699999974 443 222221 111226889999997 5666444332 3 5
Q ss_pred cEEEeeCCCCCCc-----ee-EeecC-CCCCCCeEEEEEcCCCCcEEEEEec-------------CCeEEEEecCCCC--
Q 017773 166 TMQMWDPRCDGGK-----CV-STVQP-SASRSAVCCVEFHPFGSSLVAAGCA-------------DKKAYAYDVRKMV-- 223 (366)
Q Consensus 166 ~v~~~d~~~~~~~-----~~-~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~-- 223 (366)
.|..|+....... .+ ..+.. ..| ....++|.|+| .++++-+. .|.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 6777776621101 11 11221 123 45679999999 55555322 2566666654320
Q ss_pred -----CCeeEeecccCcEEEEEEc-CCCEEEEEeCCC----cEEEEecCC----------------Cceeeee-ecccce
Q 017773 224 -----DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG----CLKLWNVND----------------SRVIRTY-KGHVNN 276 (366)
Q Consensus 224 -----~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~iwd~~~----------------~~~~~~~-~~~~~~ 276 (366)
.......++.. ...++|+ +...|.++.... .|.+...-. ..++..+ ..+. .
T Consensus 183 ~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~-a 260 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW-A 260 (354)
T ss_dssp TSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC-C
T ss_pred CCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc-C
Confidence 01111223433 3578887 233344433221 233322110 0122233 1222 2
Q ss_pred eeeEEEEE-----ecCCCeEEEecCCCeEEEEEeecC-ceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 277 RNFVGLSV-----WRHGGLLGCGSETNQVFVYDVRWG-EPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 277 ~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
...+.+.- ..+|.++++.-..+.|...++... +......+ ..+....+..+++.| ||.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~~~~rp~~v~~~p---DG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-----FKNVFGRLRDVVIDD---DGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-----CTTTSCCEEEEEECT---TSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-----ccCCCCCeeEEEECC---CCcEEEEEe
Confidence 23344410 146777777777788988888753 32211111 112245789999999 887776654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.22 E-value=0.08 Score=45.15 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=77.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc------------eeEeeecC-----CCCceeeEEeccCCCc--eEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV------------PIFERDEH-----GGRRVWSVDYSKGDPV--LGA 159 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~-----~~~~v~~i~~~~~~~~--l~~ 159 (366)
.|..+..+|+ |++||..+ +..|.|..+..+. ..+.+... ...+|..+.|+|-+.. .++
T Consensus 67 ~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 67 DTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp TTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred ceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 4788999999 99999987 5679998887331 11122221 1237999999997543 337
Q ss_pred EecCCCcEEEeeCCCCCCceeEeec-------CCCCCCCeEEEEEcCCCCcEEEEEe--cCCeEEEE
Q 017773 160 SGSDDGTMQMWDPRCDGGKCVSTVQ-------PSASRSAVCCVEFHPFGSSLVAAGC--ADKKAYAY 217 (366)
Q Consensus 160 ~~~~dg~v~~~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~ 217 (366)
+-..|+.|++||+.....++. .+. .......|.+++|.+++ -.|...+ ..|.|+-.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence 888899999999984333333 332 11223578899999966 6666644 77888765
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.11 E-value=0.089 Score=43.51 Aligned_cols=187 Identities=12% Similarity=0.143 Sum_probs=90.0
Q ss_pred CcEEEEEcC----CC-------cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-------CcEEEeeC
Q 017773 111 GRVLGSGDY----DG-------VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-------GTMQMWDP 172 (366)
Q Consensus 111 ~~~l~~~~~----dg-------~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-------g~v~~~d~ 172 (366)
+.+++.|+. ++ .+..||+.+.+-...-.....+.-.+++.. ++ .+++.|+.+ ..+.+||+
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeC
Confidence 677777773 12 177888877654332111111111122222 33 444666643 24778888
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec------CCeEEEEecCCCCCCeeEeecccC--cEEEEEEcCC
Q 017773 173 RCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA------DKKAYAYDVRKMVDPVLVFDGHRK--TVTYIRFLDV 244 (366)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~ 244 (366)
. +.+-...-..+.....- +++. .++ .+++.|+. -..+.+||+.+. .-..+..... .-.+++..++
T Consensus 135 ~--~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~ 207 (318)
T 2woz_A 135 V--AAKWSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIHKG 207 (318)
T ss_dssp T--TTEEEEECCCSSCEESC-EEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETT
T ss_pred C--CCCEeECCCCCCccccc-EEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEECC
Confidence 7 43333221211111111 2222 234 67777764 245899998875 2222211111 1112233367
Q ss_pred CEEEEEeCCC-----cEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCC--------------CeEEEE
Q 017773 245 DTLVTAGTDG-----CLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET--------------NQVFVY 303 (366)
Q Consensus 245 ~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iw 303 (366)
.+++.|+.++ .+.+||+.+.+- +..+..... ...... .++++++.|+.+ ..+.+|
T Consensus 208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS--SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB--SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc--ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 7777777543 467889877532 222221111 111122 367777777654 347777
Q ss_pred EeecCce
Q 017773 304 DVRWGEP 310 (366)
Q Consensus 304 d~~~~~~ 310 (366)
|+.+.+-
T Consensus 284 d~~~~~W 290 (318)
T 2woz_A 284 EDDKKEW 290 (318)
T ss_dssp ETTTTEE
T ss_pred eCCCCEe
Confidence 7766543
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.07 E-value=0.097 Score=43.22 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=90.4
Q ss_pred CcEEEEEcC----C-------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC--------CcEEEee
Q 017773 111 GRVLGSGDY----D-------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD--------GTMQMWD 171 (366)
Q Consensus 111 ~~~l~~~~~----d-------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--------g~v~~~d 171 (366)
+.+++.|+. + ..+..||+.+++-...-.....+.-.+++.. +..+++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 677777763 1 1277888887654322111111011122222 34454666632 4588899
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec-C-----CeEEEEecCCCCCCeeEeeccc--CcEEEEEEcC
Q 017773 172 PRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA-D-----KKAYAYDVRKMVDPVLVFDGHR--KTVTYIRFLD 243 (366)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~ 243 (366)
+. +.+-...-..+.....- +++. -++ .+++.|+. + ..+.+||+.+. .-..+.... ..-.+++..+
T Consensus 124 ~~--~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 124 RL--SFKWGESDPLPYVVYGH-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp TT--TTEEEECCCCSSCCBSC-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEET
T ss_pred CC--CCcEeECCCCCCcccce-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEEC
Confidence 88 43322221111111122 2222 233 67777776 2 46889998764 222221111 1111222337
Q ss_pred CCEEEEEeCCC-----cEEEEecCCCce--eeeeecccceeeeEEEEEecCCCeEEEecCCC--------------eEEE
Q 017773 244 VDTLVTAGTDG-----CLKLWNVNDSRV--IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETN--------------QVFV 302 (366)
Q Consensus 244 ~~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~i 302 (366)
+.+++.|+.++ .+.+||..+.+- +..+.... ....+.. -++++++.|+.++ .+.+
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~ 272 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER--SSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWR 272 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC--BSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc--cceeEEE--ECCEEEEECCccccCcCCccccccccCcEEE
Confidence 77888887654 478899877632 22221111 1111222 3667777776532 3566
Q ss_pred EEeecCc
Q 017773 303 YDVRWGE 309 (366)
Q Consensus 303 wd~~~~~ 309 (366)
||+.+.+
T Consensus 273 yd~~~~~ 279 (315)
T 4asc_A 273 YNEEEKK 279 (315)
T ss_dssp EETTTTE
T ss_pred ecCCCCh
Confidence 7766554
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.03 E-value=0.12 Score=43.59 Aligned_cols=243 Identities=13% Similarity=-0.005 Sum_probs=125.8
Q ss_pred ceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCc--eeEeee---cCCCCceeeEEeccC---CCceEEEecC------
Q 017773 99 KLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKV--PIFERD---EHGGRRVWSVDYSKG---DPVLGASGSD------ 163 (366)
Q Consensus 99 ~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~--~~~~~~---~~~~~~v~~i~~~~~---~~~l~~~~~~------ 163 (366)
....|+|.|+ |+ +++ +...|.|++++..... .+..+. .........|+++|+ +..+.++-..
T Consensus 19 ~P~~i~~~pd--G~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPD--NHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECST--TCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCC--CCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3678999998 88 554 4557999999864321 111111 111225789999996 5555444332
Q ss_pred -CCcEEEeeCCCCCCc--eeE-eec-C-----CCCCCCeEEEEEcCCCCcEEEEEec-------------CCeEEEEecC
Q 017773 164 -DGTMQMWDPRCDGGK--CVS-TVQ-P-----SASRSAVCCVEFHPFGSSLVAAGCA-------------DKKAYAYDVR 220 (366)
Q Consensus 164 -dg~v~~~d~~~~~~~--~~~-~~~-~-----~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~ 220 (366)
...|..+++...... ... .+. . ..| ....++|.|+| .++++-+. .|.|.-+|..
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666521111 111 111 1 123 35679999998 55555432 2567777765
Q ss_pred CCC------------CCeeEeecccCcEEEEEEc-CCCEEEEEeCCC--cEEEEecCCC---------------------
Q 017773 221 KMV------------DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDG--CLKLWNVNDS--------------------- 264 (366)
Q Consensus 221 ~~~------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~i~iwd~~~~--------------------- 264 (366)
... .....-.++. ....++|. ....|.++.... .=.|.-+..+
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 420 0111112332 35778887 345555544321 1122211111
Q ss_pred ----------ceeeeeecccceeeeEEEEE-----ecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCcee
Q 017773 265 ----------RVIRTYKGHVNNRNFVGLSV-----WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFV 329 (366)
Q Consensus 265 ----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 329 (366)
.++..+..|. ....+.+.- ..+|.++++.-..+.|...++..++......+ +......+
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~rp 325 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI-----LTDRGQRI 325 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCC-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE-----SGGGCCCE
T ss_pred ccCCCCCCccCCeEEeCCCc-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc-----ccCCCCce
Confidence 1111222222 223344431 02577888777788898888886654433221 11223578
Q ss_pred eEEEeeccCCCceEEEEeC-CCCcEEEEEec
Q 017773 330 SSVCWRRVGEDECTLVAGG-SDGLLHVFVGK 359 (366)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 359 (366)
..+++.| ||.++++.. .+| +||.+.
T Consensus 326 ~~v~~~p---dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 326 RDVRTGP---DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EEEEECT---TSCEEEEECSTTE--EEEEEE
T ss_pred eEEEECC---CCcEEEEEeCCCC--EEEEEe
Confidence 9999999 887666543 455 566654
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.14 Score=50.73 Aligned_cols=226 Identities=12% Similarity=0.128 Sum_probs=135.4
Q ss_pred CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCC
Q 017773 64 RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGR 143 (366)
Q Consensus 64 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 143 (366)
..|.|-|+.++....+. . -.--+.-.+|. .+.+|.-. ..++.|+|+++...+.......
T Consensus 48 ~~vvIidl~~~~~~~rr-p---------------i~AdsAIMnP~--~~iiALra-g~~lQiFnl~~k~klks~~~~e-- 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR-P---------------ISADSAIMNPA--SKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-- 106 (1630)
T ss_pred ceEEEEECCCCCCcccc-c---------------ccchhhccCCC--cceEEEec-CCeEEEeehHHhhhhcccccCC--
Confidence 47888888775543200 0 01233456776 66666554 6889999999988777776655
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCC--CCCCeEEEEEcCCCCcEEEEEe------cCCeEE
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSA--SRSAVCCVEFHPFGSSLVAAGC------ADKKAY 215 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~------~d~~i~ 215 (366)
+|.-=.|-.....-++| +..|+-|++.. ...+.+.+.... ....|..-..+++..-++++|- -.|.+.
T Consensus 107 ~VvfWkWis~~~l~lVT---~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT---DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CceEEEecCCCeeEEEc---CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence 56666776544433233 45799999972 334444443221 1246777777888744444442 458899
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc----CCCEEEEEeC---CCcEEEEecCCC---ceee------ee-ecccceee
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL----DVDTLVTAGT---DGCLKLWNVNDS---RVIR------TY-KGHVNNRN 278 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~---d~~i~iwd~~~~---~~~~------~~-~~~~~~~~ 278 (366)
+|..+.. ..+.+.+|.+....+... +...|+.+.. .+.+.|-++... .+.. .+ ......-.
T Consensus 183 LyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 183 LYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 9998774 556677776665554443 1223332222 368888888543 1111 11 11001112
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
-+++..++.-..+..-+.-|.|+++|+.++.+++.-.+
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 23444447777888888999999999999998876543
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.98 E-value=0.13 Score=43.17 Aligned_cols=212 Identities=9% Similarity=0.040 Sum_probs=113.3
Q ss_pred EEEEECCCCCEEEEe------------ecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCc-
Q 017773 46 GVIEFDPSDSVFATG------------GIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGR- 112 (366)
Q Consensus 46 ~~~~~s~~~~~l~t~------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 112 (366)
-.++..|+|..+.++ ..+|.|.++|.++...........+.. +....-....+.+.++.++.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-----~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-----LDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-----CCGGGCCEEEEEEEECTTCCE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-----CCcCceeeeeeEEEECCCCcE
Confidence 345567887554444 168999999987432211111222210 00011235667776632242
Q ss_pred EEEEE-cC--CCcEEEEeCCCCc----eeEeeecCCCCceeeEEeccCCCceEEEec-----------------CCCcEE
Q 017773 113 VLGSG-DY--DGVVMEYDLEKKV----PIFERDEHGGRRVWSVDYSKGDPVLGASGS-----------------DDGTMQ 168 (366)
Q Consensus 113 ~l~~~-~~--dg~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----------------~dg~v~ 168 (366)
+|+.+ .. +.+|.+|+++... .+..+.+..-...+++.+.++|..+ ++.. ..|.|.
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fy-vt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFY-ATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEE-EEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEE-ecCCcEeCCcccccchhhccCCccEEE
Confidence 34443 32 5678888776532 2233444333467899999988755 5543 124455
Q ss_pred EeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC--eeEeecccCcEEEEEEc-C-C
Q 017773 169 MWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP--VLVFDGHRKTVTYIRFL-D-V 244 (366)
Q Consensus 169 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~-~-~ 244 (366)
.+|.. +...... .-...+.++|+|+++.++++-+..+.|+.|++...... ...+ ...+....+++. + |
T Consensus 207 r~d~~----~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 207 YYSPN----DVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp EECTT----CCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred EEECC----eEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 55532 2222221 12267899999999656666667899999998743222 1223 224556778887 4 7
Q ss_pred CEEEEEeCC-CcEEEEecC--CCceeeeee
Q 017773 245 DTLVTAGTD-GCLKLWNVN--DSRVIRTYK 271 (366)
Q Consensus 245 ~~l~~~~~d-~~i~iwd~~--~~~~~~~~~ 271 (366)
++.+++..+ +.|..|+.. .+..+..++
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 776666534 345555543 233444443
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.18 Score=43.13 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEeeecC---CCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCC---C-------
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKVPIFERDEH---GGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDG---G------- 177 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~---~------- 177 (366)
|..++.+- ++.||.-++......+.+... ....|..+..+|+|.+|.+.| +..|.+..+.... .
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccc
Confidence 55555554 477888888754444444443 122678899999999884443 4578887776211 0
Q ss_pred ceeEeecCCC----CCCCeEEEEEcCCCC--cEEEEEecCCeEEEEecCCC-CCCeeEee---------cccCcEEEEEE
Q 017773 178 KCVSTVQPSA----SRSAVCCVEFHPFGS--SLVAAGCADKKAYAYDVRKM-VDPVLVFD---------GHRKTVTYIRF 241 (366)
Q Consensus 178 ~~~~~~~~~~----~~~~i~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~-~~~~~~~~---------~~~~~v~~~~~ 241 (366)
-..+.+.... ...+|..+.|+|-+. ..|++-..|+.|++||+... .++. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 0112222211 246899999999763 37888889999999999863 2233 222 12256889999
Q ss_pred c-CCCEEEEEe--CCCcEEEE
Q 017773 242 L-DVDTLVTAG--TDGCLKLW 259 (366)
Q Consensus 242 ~-~~~~l~~~~--~d~~i~iw 259 (366)
. ++-.|...+ .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 8 666666644 77877643
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.14 Score=50.63 Aligned_cols=238 Identities=15% Similarity=0.139 Sum_probs=131.3
Q ss_pred EEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEE
Q 017773 47 VIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEY 126 (366)
Q Consensus 47 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 126 (366)
+.-.+|..+.+|.-. ..++.|||+++..... ...- +.+|.-=.|-.. +.|+-.+ +..|..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klk---s~~~-----------~e~VvfWkWis~---~~l~lVT-~~aVyHW 130 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---AHTM-----------TDDVTFWKWISL---NTVALVT-DNAVYHW 130 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhc---cccc-----------CCCceEEEecCC---CeeEEEc-CCeEEEe
Confidence 345678777777764 6789999998865543 1111 124555566543 3444444 4579999
Q ss_pred eCCCC-ceeEeeecCC---CCceeeEEeccCCCceEEEec------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEE
Q 017773 127 DLEKK-VPIFERDEHG---GRRVWSVDYSKGDPVLGASGS------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 127 ~~~~~-~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (366)
++... .+...+..|. +..|..-..+++.+.++++|- -.|.+.+|..+ .+..+.+. +|......+.
T Consensus 131 ~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e---r~~sQ~ie--gha~~F~~~~ 205 (1630)
T 1xi4_A 131 SMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQPIE--GHAASFAQFK 205 (1630)
T ss_pred ccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc---cccchhhh--HhHhhhheec
Confidence 99743 3444333331 236777777888888866654 35788999987 22333332 3322222222
Q ss_pred Ec--CCCCcEEEEEec---CCeEEEEecCCC--CCC------eeEeecc---cCcEEEEEEc-CCCEEEEEeCCCcEEEE
Q 017773 197 FH--PFGSSLVAAGCA---DKKAYAYDVRKM--VDP------VLVFDGH---RKTVTYIRFL-DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 197 ~~--~~~~~~l~~~~~---d~~i~i~d~~~~--~~~------~~~~~~~---~~~v~~~~~~-~~~~l~~~~~d~~i~iw 259 (366)
.. +....+++.+.. .+.++|.++... +.+ +..+.+. ..-..++..+ .-..+..-+.-|.|.+|
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence 21 111123322222 268888888543 111 1111111 2233456666 56677888889999999
Q ss_pred ecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce
Q 017773 260 NVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP 310 (366)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 310 (366)
|+.++.++..-+-...++...+-. ....=++.....|.|.-..++....
T Consensus 286 d~~t~~~i~~~ris~~~iF~~~~~--~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 286 DLETGTCIYMNRISGETIFVTAPH--EATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ecccchhhhhccccCCceEEeccC--CCCCceEEEcCCceEEEEEEccchh
Confidence 999998887665544444333322 2222233334666666655554443
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.79 E-value=0.19 Score=42.27 Aligned_cols=142 Identities=10% Similarity=-0.021 Sum_probs=66.8
Q ss_pred CcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEec------CCeEEEEecCCCCCCeeEeecc---cCc
Q 017773 165 GTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCA------DKKAYAYDVRKMVDPVLVFDGH---RKT 235 (366)
Q Consensus 165 g~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~---~~~ 235 (366)
..+.+||+.+..-..+..+.... ..-.+++.. ++ .+++.|+. ...+.+||+......-..+... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~--~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~ 243 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYG--TAGAAVVNK-GD-KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCC--CBSCEEEEE-TT-EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred ccEEEEeCCCCcEEECCCCCCCC--cccccEEEE-CC-EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence 47889998832222333222111 111233333 33 67777764 3457778772221122222111 111
Q ss_pred -EEEEEEcCCCEEEEEeCC----------------------CcEEEEecCCCc--eeeeeecccceeeeEEEEEecCCCe
Q 017773 236 -VTYIRFLDVDTLVTAGTD----------------------GCLKLWNVNDSR--VIRTYKGHVNNRNFVGLSVWRHGGL 290 (366)
Q Consensus 236 -v~~~~~~~~~~l~~~~~d----------------------~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (366)
-.++...++.+++.|+.+ ..+.+||+.+.+ .+..+..... ...++. .++++
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~--~~~~i 319 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA--YGVSLP--WNNSL 319 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB--SSEEEE--ETTEE
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc--cceeEE--eCCEE
Confidence 112333367777877742 247789987653 3333322211 122232 46788
Q ss_pred EEEecCCC------eEEEEEeecCceEEEE
Q 017773 291 LGCGSETN------QVFVYDVRWGEPVWVH 314 (366)
Q Consensus 291 l~~~~~dg------~i~iwd~~~~~~~~~~ 314 (366)
++.|+.++ .|.++++++++.+...
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 88887543 3566677777766544
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0022 Score=53.42 Aligned_cols=112 Identities=11% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEE--cCCCCcEEEEE-ecCCeEEEEecCCCCCCeeEeec---
Q 017773 158 GASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEF--HPFGSSLVAAG-CADKKAYAYDVRKMVDPVLVFDG--- 231 (366)
Q Consensus 158 ~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~--- 231 (366)
++.++.||.|.-+|.. +++....++.. ...++....- .+.+...++.. +.||.|+.+|..++ .....+..
T Consensus 13 V~v~t~dG~l~Ald~~--tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~l 88 (339)
T 2be1_A 13 LIAADVEGGLHAVDRR--NGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQL 88 (339)
T ss_dssp EEEEETTSCEEEEETT--TTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHH
T ss_pred EEEEeCCCeEEEEECC--CCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeeccccc
Confidence 4888999999999988 88888888654 1112222110 01121344443 58999999998776 22222221
Q ss_pred -ccCcEEE---EEE------cCCCEEEEEeCCCcEEEEecCCCceeeeeecc
Q 017773 232 -HRKTVTY---IRF------LDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGH 273 (366)
Q Consensus 232 -~~~~v~~---~~~------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (366)
...++.. ... +.+..+++++.+|.+...|+++|+.+.++...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1122221 001 24568899999999999999999999888643
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.34 E-value=0.59 Score=43.42 Aligned_cols=203 Identities=14% Similarity=0.095 Sum_probs=100.9
Q ss_pred CCCCEEEEeecC----CeEEEEEceecccccceeeee-cCceeceeeeecCCceeEEEEec-CCCCcEEEEEcCC-----
Q 017773 52 PSDSVFATGGIA----RKIRIYNIKSVLVDHPVVAVV-DHSKVCDYYICTPAKLSSLKWKP-GTSGRVLGSGDYD----- 120 (366)
Q Consensus 52 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d----- 120 (366)
.++.+++.||.+ ..+.+||..+..-........ +... .+..-.+++..+ + +.+++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p-------~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP-------VARMCHTFTTISRN--NQLLLIGGRKAPHQG 466 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC-------CCCBSCEEEEETTT--TEEEEECCBSSTTCB
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC-------ccccceEEEEEccC--CEEEEEcCCCCCCCc
Confidence 456778888754 357777776543211000000 0000 001122334443 5 7788887754
Q ss_pred -CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCC--cEEEeeCCCCCCceeEeec---CCCCCCCeEE
Q 017773 121 -GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDG--TMQMWDPRCDGGKCVSTVQ---PSASRSAVCC 194 (366)
Q Consensus 121 -g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg--~v~~~d~~~~~~~~~~~~~---~~~~~~~i~~ 194 (366)
..+.+||+.+.+-...-.....+.-.+++...++..+ +.|+.++ .+.+||+. +......-. .+.......+
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iy-v~GG~~~~~~v~~yd~~--t~~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVL-ILGGVTEGPAMLLYNVT--EEIFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEE-EECCBCSSCSEEEEETT--TTEEEECCCSSGGGGSCCBSCE
T ss_pred cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEE-EECCCCCCCCEEEEECC--CCceEEccCCCCCCCcccceeE
Confidence 3578899887643332211111112223332345544 7776544 68999988 333222211 1111123334
Q ss_pred EEEcCCCCcEEEEEec--C-----CeEEEEecCCCCC--C--eeEeec--cc--CcEEEEEEcCCCEEEEEeCC------
Q 017773 195 VEFHPFGSSLVAAGCA--D-----KKAYAYDVRKMVD--P--VLVFDG--HR--KTVTYIRFLDVDTLVTAGTD------ 253 (366)
Q Consensus 195 ~~~~~~~~~~l~~~~~--d-----~~i~i~d~~~~~~--~--~~~~~~--~~--~~v~~~~~~~~~~l~~~~~d------ 253 (366)
+.+....+.+++.|+. + ..+.+||+.+..- . ...+.. .. .....+.+.++.+++.|+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 5556552368888875 2 4689999987630 0 122211 11 11122222237888888743
Q ss_pred --CcEEEEecCCCce
Q 017773 254 --GCLKLWNVNDSRV 266 (366)
Q Consensus 254 --~~i~iwd~~~~~~ 266 (366)
..+.+||..+.+-
T Consensus 624 ~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 624 RTNSIISLDPLSETL 638 (695)
T ss_dssp TTTSEEEEETTTTEE
T ss_pred CCCeEEEEECCCCeE
Confidence 4589999887643
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.30 E-value=0.39 Score=40.11 Aligned_cols=234 Identities=13% Similarity=0.063 Sum_probs=122.4
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeE--eee---cCCCCceeeEEeccC---CCceEEEe--cCCCcEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIF--ERD---EHGGRRVWSVDYSKG---DPVLGASG--SDDGTMQ 168 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~---~~~~~~v~~i~~~~~---~~~l~~~~--~~dg~v~ 168 (366)
....|+|.|+ |.++++--..|.|++++...++... .+. .........|+++|+ +..+.++- ..++.|.
T Consensus 33 ~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 33 SPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CceEEEEcCC--CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 4688999999 9887777668999999876554321 111 112236889999995 44453332 2345566
Q ss_pred EeeCCCCC--------CceeE-eecC-CCCCCCeEEEEEcCCCCcEEEEEec-------------CCeEEEEecCCCC--
Q 017773 169 MWDPRCDG--------GKCVS-TVQP-SASRSAVCCVEFHPFGSSLVAAGCA-------------DKKAYAYDVRKMV-- 223 (366)
Q Consensus 169 ~~d~~~~~--------~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~-- 223 (366)
-|...... .+.+. .+.. ..| ....|+|.|+| .++++.+. .|.|.-++.....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 66655210 11111 1221 123 56679999998 55555332 3556555654320
Q ss_pred -----CCeeEeecccCcEEEEEEc-CCCEEEEEe-CCCcEEEEecCCC------------------ceeeeeecccceee
Q 017773 224 -----DPVLVFDGHRKTVTYIRFL-DVDTLVTAG-TDGCLKLWNVNDS------------------RVIRTYKGHVNNRN 278 (366)
Q Consensus 224 -----~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~------------------~~~~~~~~~~~~~~ 278 (366)
.....-.+|.. ...++|+ ++.++++-. .|+.=.|--+..+ .++..+..+.....
T Consensus 188 ~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 188 GNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp TCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 01111224433 3567887 655444332 2222222222222 11222222211223
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeC
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGG 348 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 348 (366)
.+++. ++.++...-..+.|....+........ ....+.+..+.+..++..| ||.++++..
T Consensus 267 G~~~~---~g~~~~~~l~~~~l~~v~~~~~~~~~~----~e~~l~~~~gR~~dv~~~p---DG~lyv~td 326 (347)
T 3das_A 267 GIAYA---EGSVWMAGLRGERLWRIPLKGTAAAAD----PQAFLEGEYGRLRTVAPAG---GDKLWLVTS 326 (347)
T ss_dssp EEEEE---TTEEEEEESTTCSEEEEEEETTEESSC----CEEESTTTSSCEEEEEEEE---TTEEEEEEC
T ss_pred ceEEE---cCceeeccccCCEEEEEEecCCceecc----eEEeecCCCCCccEEEECC---CCcEEEEEc
Confidence 34443 566666666667777777765533110 0111233356899999999 887776644
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.27 E-value=0.031 Score=42.96 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceeccccc--ceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCC
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDH--PVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYD 120 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 120 (366)
..+..++|+|+|.+.++ .+|.+.-.+..+..... ...+..+.. +- ..-.++.|.|+ |.+.++ .|
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-------Gw-~~F~a~~fD~~--G~LYav--~d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-------GW-NQFQFLFFDPN--GYLYAV--SK 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-------CG-GGCSEEEECTT--SCEEEE--ET
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-------cc-ccceEEEECCC--CCEEEe--CC
Confidence 46789999999987666 67765544433211110 000000000 00 11378999998 888877 46
Q ss_pred CcEEEEeCCCCcee------EeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc------eeEeecCCCC
Q 017773 121 GVVMEYDLEKKVPI------FERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK------CVSTVQPSAS 188 (366)
Q Consensus 121 g~i~iw~~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~------~~~~~~~~~~ 188 (366)
|.|.-++..+.... ..+....-..+..|.+.|+|... +.. |+.++-.... ... ....+- ...
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~--dg~lyr~~~P--~~~~~~wl~~~~~~g-~~g 180 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH--GQQFYKALPP--VSNQDNWLARATKIG-QGG 180 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE--TTEEEEECCC--SSTTCCHHHHCEEEE-SSS
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe--CCcEEecCCC--CCCCcccccccceec-cCC
Confidence 99988876432111 11111111278999999998765 444 7765432222 111 011111 011
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCeEE
Q 017773 189 RSAVCCVEFHPFGSSLVAAGCADKKAY 215 (366)
Q Consensus 189 ~~~i~~~~~~~~~~~~l~~~~~d~~i~ 215 (366)
-..-+-+.|.|++ .+.++. ++.++
T Consensus 181 ~~~yr~l~f~~~G-~l~~v~--~g~~Y 204 (236)
T 1tl2_A 181 WDTFKFLFFSSVG-TLFGVQ--GGKFY 204 (236)
T ss_dssp GGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred cceEEEEEECCCC-cEEEEe--CCeEE
Confidence 1244557788987 555554 77443
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.12 E-value=0.32 Score=37.44 Aligned_cols=137 Identities=11% Similarity=0.003 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCcEEEEeCCCCc------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCce-----
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKV------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKC----- 179 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~----- 179 (366)
..+|+....| +++.=...++. ....+-...-..+..++|+|++... ++ .+|.++-.+.. +...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LY-aV--~~G~Ly~~~~~--t~~~~~W~~ 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELY-GV--LNDKIYKGTPP--THDNDNWMG 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEE-EE--ETTEEEEESCC--CSTTCCHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEE-EE--eCCeEEEECCC--CCCcccccc
Confidence 4556666666 65554444433 1122222111268899999977644 44 67776666654 2111
Q ss_pred -eEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCe-----eEe-ecccCcEEEEEEc-CCCEEEEEe
Q 017773 180 -VSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPV-----LVF-DGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~-~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
-..+-..+- ..-.++.|.|+| .+.++ .||.|+-++..+..... ..+ ..-=..+..|.+. ++.+.+..
T Consensus 78 s~t~IG~~Gw-~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 78 RAKKIGNGGW-NQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp HCEEEECSCG-GGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cccEeccccc-ccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 111111011 124789999998 56666 66999888764321110 011 1111457888888 66555444
Q ss_pred CCCcEEEE
Q 017773 252 TDGCLKLW 259 (366)
Q Consensus 252 ~d~~i~iw 259 (366)
|+.+.-.
T Consensus 153 -dg~lyr~ 159 (236)
T 1tl2_A 153 -GQQFYKA 159 (236)
T ss_dssp -TTEEEEE
T ss_pred -CCcEEec
Confidence 7775433
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.04 E-value=0.68 Score=40.44 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=59.9
Q ss_pred CceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCC--CCcEEEEEcC-
Q 017773 43 DSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGT--SGRVLGSGDY- 119 (366)
Q Consensus 43 ~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~- 119 (366)
.....|+|.|+|+++++-...+.|++++..++.... ...+.... ...........|+|+|+. ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~----~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIV----NDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCC----CCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccc----cccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 346799999999977775433478888754332111 11111000 000113467899999941 1555554432
Q ss_pred -----------CCcEEEEeCCCC-------ceeEe-eecCCCCceeeEEeccCCCceEEEec
Q 017773 120 -----------DGVVMEYDLEKK-------VPIFE-RDEHGGRRVWSVDYSKGDPVLGASGS 162 (366)
Q Consensus 120 -----------dg~i~iw~~~~~-------~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~ 162 (366)
...|.-+++..+ +.+.. +..........|+|.|+|..++.+|.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655322 11111 22111115788999999986644443
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.71 E-value=1 Score=41.75 Aligned_cols=193 Identities=12% Similarity=0.065 Sum_probs=98.8
Q ss_pred CcEEEEEcCC----CcEEEEeCCCCceeEee-e-----cCCCCceeeEEecc-CCCceEEEecCC------CcEEEeeCC
Q 017773 111 GRVLGSGDYD----GVVMEYDLEKKVPIFER-D-----EHGGRRVWSVDYSK-GDPVLGASGSDD------GTMQMWDPR 173 (366)
Q Consensus 111 ~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~-----~~~~~~v~~i~~~~-~~~~l~~~~~~d------g~v~~~d~~ 173 (366)
+.+++.|+.+ ..+.+||+.+++-...- . ....+.-.+++..+ ++. +++.|+.+ ..+.+||+.
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeCC
Confidence 6677777643 46888998877543322 1 11111222333333 444 44666643 357889988
Q ss_pred CCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC--eEEEEecCCCCCCeeEeec------ccCcEEEEEEc-C-
Q 017773 174 CDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK--KAYAYDVRKMVDPVLVFDG------HRKTVTYIRFL-D- 243 (366)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~-~- 243 (366)
+.+....-...... .-.+++...++ .+++.|+.++ .+.+||+.+. ....+.. .......+.+. +
T Consensus 477 --t~~W~~~~~~p~~R-~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 477 --TREWSMIKSLSHTR-FRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp --TTEEEECCCCSBCC-BSCEEEECTTS-CEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred --CCcEEECCCCCCCc-ccceEEEEcCC-EEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeEEEEeCCC
Confidence 33322221111111 22233332355 7888887654 6899998875 2222211 11112234444 3
Q ss_pred CCEEEEEeC--C-----CcEEEEecCCCce-----eeeeecc--cceeeeEEEEEecCCCeEEEecC--------CCeEE
Q 017773 244 VDTLVTAGT--D-----GCLKLWNVNDSRV-----IRTYKGH--VNNRNFVGLSVWRHGGLLGCGSE--------TNQVF 301 (366)
Q Consensus 244 ~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~ 301 (366)
+.+++.|+. + ..+.+||+.+..- -..+... .......+.. ..++++++.|+. ...+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777775 2 3588999887661 1122111 1111111122 134788888874 34689
Q ss_pred EEEeecCceE
Q 017773 302 VYDVRWGEPV 311 (366)
Q Consensus 302 iwd~~~~~~~ 311 (366)
+||+.+.+-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9998876543
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.59 E-value=1.5 Score=41.09 Aligned_cols=281 Identities=10% Similarity=0.038 Sum_probs=142.7
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|.++...++|.+.+ |+..| |..++..+..... ....... ......|.++...++ +..|..|+. +
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~--~~~~~~~------~~~~~~i~~i~~d~~--~~~lWigt~-~ 211 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG--IPLPVHS------SQSNLFVNSLLEDTT--RQCVWIGTE-G 211 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE--ECCCCCT------TCSSCCEEEEEEETT--TTEEEEEEE-E
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE--ecCCCcc------ccccceeEEEEEECC--CCEEEEEEC-C
Confidence 45688888888886554 44444 6667755432111 0000000 001124788887776 665555654 4
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC------CCCCCeEEE
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS------ASRSAVCCV 195 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~------~~~~~i~~~ 195 (366)
-+..+|..+++.......... .|.++...+++... .|+.+ -+.+++.. +.+. ..+... -....|.++
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lW--igT~~-Gl~~~~~~--~~~~-~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNN-SIKSLALDGNGDLL--AGTDN-GLYVYHND--TTPL-QHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEE-EEEEEEECTTCCEE--EEETT-EEEEECCT--TSCC-EEECCCTTCTTSCSCSCEEEE
T ss_pred CCeEEcCCCCeEEeccCCCCC-eEEEEEEcCCCCEE--EEeCC-ceeEEecC--CCcE-EEEEcCCCCcCcCCcCeEEEE
Confidence 588889877653322111122 68888887776655 34444 58888876 3332 222111 122368999
Q ss_pred EEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEee-------cccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCc--e
Q 017773 196 EFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFD-------GHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSR--V 266 (366)
Q Consensus 196 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~ 266 (366)
....+| . |-.|+..| +.++.... ....+. .....|.++.-.....|..|+.+| +..++..+++ .
T Consensus 285 ~~D~~g-~-lWiGT~~G-l~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 285 FADQEH-N-IWLGTDYG-ISLSRYNS---ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHD 357 (758)
T ss_dssp EECTTC-C-EEEEESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCC
T ss_pred EEcCCC-C-EEEEeCCc-ccccccCC---ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccce
Confidence 888887 3 33444556 55443321 122211 112457777766333455555554 6667655432 1
Q ss_pred eeeeec-------ccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCC
Q 017773 267 IRTYKG-------HVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGE 339 (366)
Q Consensus 267 ~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 339 (366)
...+.. ....|.+ +...++|.+.+ |+. +-|..||..+++........... ......|.++...+
T Consensus 358 ~~~~~~~~~~~~l~~~~v~~--i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d~--- 428 (758)
T 3ott_A 358 AIWYRMGDKTYPLSHNRIRH--IYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTG--TYNTNWTYYIFEDT--- 428 (758)
T ss_dssp CEEECTTCSSSCCSCSCEEE--EEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC----CBSSSEEEEEECT---
T ss_pred eEEeccCCcCCCCCCCceEE--EEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcC--CCCCceEEEEEEcC---
Confidence 212211 1112333 33335666544 443 46888998776543221101000 00234578887765
Q ss_pred CceEEEEeCCCCcEEEEEec
Q 017773 340 DECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 340 ~~~~l~s~~~dg~i~iw~~~ 359 (366)
+|.+.+ |+..+-|.+++.+
T Consensus 429 ~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 429 AGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp TSEEEE-EESSSCEEEEEHH
T ss_pred CCCEEE-EECCCceEEEccc
Confidence 665544 5544447777654
No 343
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.37 E-value=1 Score=37.71 Aligned_cols=186 Identities=13% Similarity=0.030 Sum_probs=105.3
Q ss_pred ceeEEEEecCCCCcEEEEEc------------CCCcEEEEeCCCC--ce-eEeeecC----CCCceeeEEecc--CCC-c
Q 017773 99 KLSSLKWKPGTSGRVLGSGD------------YDGVVMEYDLEKK--VP-IFERDEH----GGRRVWSVDYSK--GDP-V 156 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~--~~-~~~~~~~----~~~~v~~i~~~~--~~~-~ 156 (366)
....+...|+ |..+++++ .+|.|.++|+++. +. ...+.+. ..-....+.+.+ ++. +
T Consensus 51 G~EDi~~~~~--G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTT--SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCC--CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 4566777776 76666552 6899999999743 21 1122221 112566777766 343 4
Q ss_pred eEEEecC--CCcEEEeeCCCCCCc--eeEeecCCCCCCCeEEEEEcCCCCcEEEEEe-----------------cCCeEE
Q 017773 157 LGASGSD--DGTMQMWDPRCDGGK--CVSTVQPSASRSAVCCVEFHPFGSSLVAAGC-----------------ADKKAY 215 (366)
Q Consensus 157 l~~~~~~--dg~v~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------------~d~~i~ 215 (366)
|+++-.. +..+.+|++...... .+..+.. ..-...+.+.+.++| .++++.. ..|.|+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEE
Confidence 5454333 567888887732222 2222322 223468899999998 6666543 135566
Q ss_pred EEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEE-eCCCcEEEEecCC-Cce--eeeeecccceeeeEEEEEec-CCC
Q 017773 216 AYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTA-GTDGCLKLWNVND-SRV--IRTYKGHVNNRNFVGLSVWR-HGG 289 (366)
Q Consensus 216 i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~ 289 (366)
.+|.. +. ..+...-...+.++|+ +++.|+.+ +..+.|..|++.. ++. ...+.. ......+++. + +|+
T Consensus 207 r~d~~---~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD--~e~G~ 279 (355)
T 3sre_A 207 YYSPN---DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVD--PVTGD 279 (355)
T ss_dssp EECTT---CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEEC--TTTCC
T ss_pred EEECC---eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEe--CCCCc
Confidence 66652 22 2233334557899999 87766555 4578899999863 322 122321 2233345555 7 488
Q ss_pred eEEEec
Q 017773 290 LLGCGS 295 (366)
Q Consensus 290 ~l~~~~ 295 (366)
+.+++.
T Consensus 280 lwva~~ 285 (355)
T 3sre_A 280 LWVGCH 285 (355)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 777554
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.35 E-value=1.8 Score=35.41 Aligned_cols=172 Identities=7% Similarity=0.038 Sum_probs=86.5
Q ss_pred CcEEEEEc--CCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCC-------------CcEEEeeCCCC
Q 017773 111 GRVLGSGD--YDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDD-------------GTMQMWDPRCD 175 (366)
Q Consensus 111 ~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-------------g~v~~~d~~~~ 175 (366)
+..++-.. .++.|...+.+...... +... . +--+++++..+..+...+ ..|+..++.
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~-l~~~---~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d-- 96 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHK-LSND---T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN-- 96 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEE-EEEE---E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT--
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEE-ccCC---c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC--
Confidence 44544442 35666666665444322 2221 2 234578888886665543 356666766
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEE---ecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCCEEEEEe
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAG---CADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVDTLVTAG 251 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 251 (366)
..+. ..+.. . . +..+++++..+..+- .....|+..++... ....+..+.. ..++ +++.|+-.+
T Consensus 97 g~~~-~~l~~--~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~lt~~~~----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 97 GHGS-TVLDP--D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--EKKKIKNHYL----FTCNTSDRYFYYNN 163 (302)
T ss_dssp SCCC-EEEEC--S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC--CCEEEESSCC----CCSEEETTEEEEEC
T ss_pred CCcc-eEeec--C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC--CeEEEeCCCc----eEeeEECCEEEEEe
Confidence 3332 22221 1 1 236777774444443 23456666676653 3344443432 2334 455555444
Q ss_pred -CCCcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCC--CeEEEEEeecCc
Q 017773 252 -TDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSET--NQVFVYDVRWGE 309 (366)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~ 309 (366)
....|...++..+.....+.+ .. ...+. |++.+|+-...+ ..|..-++..+.
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~--P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYDC---NC-YKPVV--LDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEECS---CE-EEEEE--EETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CCCceEEEEECCCCCEEEEeCC---Cc-cceee--ecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 366788888766544333332 11 12233 888887754432 345555555433
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.88 E-value=3 Score=36.35 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=60.4
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCcee--Eeeec-----CCCCceeeEEeccC---CCceEEEecC-----
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPI--FERDE-----HGGRRVWSVDYSKG---DPVLGASGSD----- 163 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~~v~~i~~~~~---~~~l~~~~~~----- 163 (366)
....|+|.|+ |+++++-...+.|++++..+++.. ..+.. .....+..|+|+|+ +..|.++-+.
T Consensus 28 ~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPD--NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCC--CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4679999999 987777655457888887555432 22221 11236779999996 5666444432
Q ss_pred -------CCcEEEeeCCCCCC-----ceeE-eecC-CCCCCCeEEEEEcCCCCcEEEE
Q 017773 164 -------DGTMQMWDPRCDGG-----KCVS-TVQP-SASRSAVCCVEFHPFGSSLVAA 207 (366)
Q Consensus 164 -------dg~v~~~d~~~~~~-----~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~ 207 (366)
...|.-++...... +.+. .+.. ..| ....|+|.|+| .++++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG-~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQ-KIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTS-CEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCC-eEEEE
Confidence 23466665541111 1111 1221 124 68899999999 45544
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.61 E-value=3.4 Score=36.09 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=57.4
Q ss_pred ceeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCc---eeEeeec--------CCCCceeeEEeccC---CCceEEEecC
Q 017773 99 KLSSLKWKPGTSGR-VLGSGDYDGVVMEYDLEKKV---PIFERDE--------HGGRRVWSVDYSKG---DPVLGASGSD 163 (366)
Q Consensus 99 ~v~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~~--------~~~~~v~~i~~~~~---~~~l~~~~~~ 163 (366)
.-..|+|.|+ +. .|+++...|.|++++..... .+..+.. ........|+|+|+ +..+.++-+.
T Consensus 15 ~P~~~a~~pd--G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGD--GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSS--SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCC--CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3578999998 75 45555678999999764321 2222210 01236789999996 3344333221
Q ss_pred --C----------CcEEEeeCCCC--------CCceeEeec--CCCCCCCeEEEEEcCCCCcEEEEE
Q 017773 164 --D----------GTMQMWDPRCD--------GGKCVSTVQ--PSASRSAVCCVEFHPFGSSLVAAG 208 (366)
Q Consensus 164 --d----------g~v~~~d~~~~--------~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~ 208 (366)
+ ..|.-|.+... +.+.+..+. ...| ....|+|.|+| .++++.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG-~LYv~~ 156 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDG-FLYIIL 156 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTS-CEEEEE
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCC-cEEEEe
Confidence 1 13444555411 112222322 1234 67899999999 454443
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.28 E-value=1.3 Score=39.41 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=68.6
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEEeeCCCC-----------CCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCC
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD-----------GGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADK 212 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 212 (366)
....+..+|+|++++++|-.+.++.++|++.- ........+. + -...-.+|.++| +...+-.-|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G--lGPlHt~Fd~~G-~aYTtlfidS 399 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G--LGPLHTTFDGRG-NAYTTLFIDS 399 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C--SCEEEEEECSSS-EEEEEETTTT
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C--CcccEEEECCCC-ceEeeeeecc
Confidence 56678999999999888989999999998720 0011222221 2 267788999998 7777778999
Q ss_pred eEEEEecCCC---------CCCeeEeecccCcEEEEEE-----c-CCCEEEEEe
Q 017773 213 KAYAYDVRKM---------VDPVLVFDGHRKTVTYIRF-----L-DVDTLVTAG 251 (366)
Q Consensus 213 ~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~-----~-~~~~l~~~~ 251 (366)
.|.-|++... ...+..+..|-.+-...+- . +|++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999642 1244455555443322221 1 566666654
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.02 E-value=4.7 Score=35.95 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=60.9
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEeeecCCCC------------------------cee--eEEec---cCCCceEEEecC
Q 017773 113 VLGSGDYDGVVMEYDLEKKVPIFERDEHGGR------------------------RVW--SVDYS---KGDPVLGASGSD 163 (366)
Q Consensus 113 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------------~v~--~i~~~---~~~~~l~~~~~~ 163 (366)
.+.+|+..|.|+++-+.+++.+..+...... ... .+.+. -+|+++++---.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678889999999999988877765432110 000 11221 246777666556
Q ss_pred CCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEc--CCCCcEEEEEec
Q 017773 164 DGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFH--PFGSSLVAAGCA 210 (366)
Q Consensus 164 dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~ 210 (366)
+..|-..++. ..++-+.+..+ ....+..+++. |+. .++++++.
T Consensus 152 n~RvAri~l~--~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T-~yv~~~~e 196 (638)
T 3sbq_A 152 NSRVARIRLD--IMKCDKMITVP-NVQAIHGLRLQKVPHT-KYVFANAE 196 (638)
T ss_dssp TTEEEEEETT--TTEEEEEEECT-TCSCEEEEEECCSSBC-CEEEEEEC
T ss_pred CcceEEEECC--cEeeceeEeCC-CCcCcccccccccCCc-cEEEecce
Confidence 7778888888 77777766654 44588888886 665 56666654
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.22 E-value=9.4 Score=35.47 Aligned_cols=248 Identities=6% Similarity=-0.030 Sum_probs=122.0
Q ss_pred ceEEEE-ECCCCCEEEEeec----C-CeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEE
Q 017773 44 SIGVIE-FDPSDSVFATGGI----A-RKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSG 117 (366)
Q Consensus 44 ~i~~~~-~s~~~~~l~t~~~----d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 117 (366)
....+. ++|++++++.+-. | ..++++|+.+++....... .. .+..... ......++|..+ ...+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~---~~~~~~~~W~d~--~~~~~~~ 202 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLL---EGKFTYPTWINK--DTIIFNL 202 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBC---CEETCCEEEEET--TEEEECC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-ccccccc---ccccceeeEECC--CEEEEEe
Confidence 345555 8999987776522 2 3699999988765431111 00 0000000 001234577743 3444431
Q ss_pred ----------cCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCc----eEEEec---CCCcEEEeeCCCCCCc
Q 017773 118 ----------DYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPV----LGASGS---DDGTMQMWDPRCDGGK 178 (366)
Q Consensus 118 ----------~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~----l~~~~~---~dg~v~~~d~~~~~~~ 178 (366)
+...+|+.|.+.+.. -...+......--.....+++++. ++++.+ ....+.+.|...+.++
T Consensus 203 ~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (711)
T 4hvt_A 203 VLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK 282 (711)
T ss_dssp CCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE
T ss_pred CCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc
Confidence 123578899887652 223333333312234445566663 345433 2245666676532233
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCcEEEEE----------ecCCeEEEEecCCCC------CCeeE-eec-ccCcEEEEE
Q 017773 179 CVSTVQPSASRSAVCCVEFHPFGSSLVAAG----------CADKKAYAYDVRKMV------DPVLV-FDG-HRKTVTYIR 240 (366)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~d~~i~i~d~~~~~------~~~~~-~~~-~~~~v~~~~ 240 (366)
...+..+.. ..+..+..+ .+++.. ...+.|...|+.+.. ..... +.. ....+..+.
T Consensus 283 -~~~l~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (711)
T 4hvt_A 283 -LQKINMPSD----ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIS 356 (711)
T ss_dssp -EEECCSCTT----CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEE
T ss_pred -ceEeecCCc----ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEE
Confidence 233332221 112334444 454422 246789999987641 22232 322 234567778
Q ss_pred EcCCCEEEEEeCCCc--EEEEecCCCc-eeee-eecc-cceeeeEEEEEecCCCe-EEEec---CCCeEEEEEee
Q 017773 241 FLDVDTLVTAGTDGC--LKLWNVNDSR-VIRT-YKGH-VNNRNFVGLSVWRHGGL-LGCGS---ETNQVFVYDVR 306 (366)
Q Consensus 241 ~~~~~~l~~~~~d~~--i~iwd~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~-l~~~~---~dg~i~iwd~~ 306 (366)
+..+.++++...++. +.++|+.+++ .... +... ...+...... +++.. +++.+ .-+.+..+|+.
T Consensus 357 ~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~--~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 357 TTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSY--EEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECC--TTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeec--CcCCEEEEEEecCCCCCEEEEEeCC
Confidence 876677788877774 6677776664 2233 2211 1233333333 55543 33332 23567777765
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.95 E-value=5.3 Score=32.16 Aligned_cols=221 Identities=14% Similarity=0.022 Sum_probs=110.8
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCc
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGK 178 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~ 178 (366)
.|..++-... ..++. . ||.|..|-....-.+.. +......|..++... .+.++. . ||.|+.|-... .++
T Consensus 25 ~i~~ia~G~~---h~~~l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~-~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF---HGLAL-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNE-DGQ 93 (282)
T ss_dssp SCCEEEECSS---EEEEE-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCT-TST
T ss_pred CCcEEEeCCC---eEEEE-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCC-CCC
Confidence 4667766542 33333 4 89999997654322111 111112566666653 233233 4 89999998662 122
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEE
Q 017773 179 CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKL 258 (366)
Q Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i 258 (366)
.-.... -...|..++.... ..++-. +|.|+.|-.....+.- ........|..++......++. . ||.|..
T Consensus 94 lg~P~~---~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~ 163 (282)
T 3qhy_B 94 TTVPAE---ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTALAV-K-NGGVIA 163 (282)
T ss_dssp TCCCGG---GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-E-TTEEEE
T ss_pred CCCCcc---cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEEEEE-E-CCEEEE
Confidence 111111 1236777777654 333334 9999999876543321 1112335677776643333333 3 799999
Q ss_pred EecCCCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccC
Q 017773 259 WNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVG 338 (366)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 338 (366)
|-......+..-..-...+..++.- ....++. .||.|+.|-......+. .+. .....|..++...
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G---~~hs~al--~~G~v~~wG~n~~gqlg---~p~-----~~~~~v~~i~~G~-- 228 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGG---IFHSLAL--KDGKVIAWGDNRYKQTT---VPT-----EALSGVSAIASGE-- 228 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEEC---SSEEEEE--ETTEEEEEECCTTSTTC---CCG-----GGGSSCCEEEECS--
T ss_pred ecCCCCCCCCCceecCCCeEEEEec---CCEEEEE--ECCeEEEEECCCCCCCC---CCc-----ccCCCceEEEcCC--
Confidence 9765432221111111233333332 2233333 58999999765432221 110 0123467776643
Q ss_pred CCceEEEEeCCCCcEEEEEec
Q 017773 339 EDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 339 ~~~~~l~s~~~dg~i~iw~~~ 359 (366)
.. .++.. ||.|+.|-..
T Consensus 229 -~h-~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 229 -WY-SLALK--NGKVIAWGSS 245 (282)
T ss_dssp -SC-EEEEE--TTEEEEESTT
T ss_pred -CE-EEEEE--CCEEEEecCC
Confidence 32 33333 8999999543
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.45 E-value=5.9 Score=31.87 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=114.6
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
...|..++....- .++. . ||.|..|-....-..... .. ....|..++-... ..++. . ||
T Consensus 23 ~~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p--~~-----------~~~~i~~ia~G~~---hs~~l-~-~G 81 (282)
T 3qhy_B 23 QSGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMP--AA-----------TQSGVDAIAAGNY---HSLAL-K-DG 81 (282)
T ss_dssp SSSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCC--GG-----------GGSCCCEEEECSS---EEEEE-E-TT
T ss_pred cCCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCC--cc-----------CCCCEEEEEeCCC---EEEEE-E-CC
Confidence 4467888776543 3333 4 899999976543222210 00 0124677776543 33333 4 89
Q ss_pred cEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCC
Q 017773 122 VVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFG 201 (366)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (366)
.|..|-....-.+..-..-. ..|..++.... +. +.-. ||.|+.|-... .++.-... .....|..++....
T Consensus 82 ~v~~wG~n~~Gqlg~P~~~~-~~v~~ia~G~~--hs-~al~-~G~v~~wG~n~-~gqlg~~~---~~~~~i~~i~~G~~- 151 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTVPAEAR-SGVDAIAAGAW--AS-YALK-DGKVIAWGDDS-DGQTTVPA---EAQSGVTALDGGVY- 151 (282)
T ss_dssp EEEEEECCTTSTTCCCGGGS-SSEEEEEEETT--EE-EEEE-TTEEEEEECCT-TSTTSCCG---GGGSSEEEEEECSS-
T ss_pred EEEEeeCCCCCCCCCCcccC-CCeEEEECcCC--EE-EEEe-CCeEEEecCCC-CCcCCCCc---cCCCCeEEEEcccC-
Confidence 99999765422111111111 26777776543 33 3334 89999998662 12211111 11236777766553
Q ss_pred CcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEE
Q 017773 202 SSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVG 281 (366)
Q Consensus 202 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (366)
..++. . ||.|+.|-.....+.- ....-...|..++.-....++. .||.|..|=......+..-......+..++
T Consensus 152 -~~~~l-~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~ 225 (282)
T 3qhy_B 152 -TALAV-K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIA 225 (282)
T ss_dssp -EEEEE-E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEE
T ss_pred -EEEEE-E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEE
Confidence 23333 3 7999999876543321 1111235677776654344444 599999997654322211111112333333
Q ss_pred EEEecCCCeEEEecCCCeEEEEEeec
Q 017773 282 LSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 282 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
.- . ...++. . ||.|+.|-...
T Consensus 226 ~G--~-~h~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 226 SG--E-WYSLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EC--S-SCEEEE-E-TTEEEEESTTC
T ss_pred cC--C-CEEEEE-E-CCEEEEecCCC
Confidence 32 2 223333 3 89999986543
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.89 E-value=10 Score=36.62 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=31.8
Q ss_pred eEEEEEecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 279 FVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
.++....++..++++-+.|+++|+|++.+++++...++.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 344444478889999999999999999999998887653
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.23 E-value=9.3 Score=31.10 Aligned_cols=174 Identities=8% Similarity=-0.010 Sum_probs=90.3
Q ss_pred EEecCCCCcEEEEEcC--------------CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEe---cCCCc
Q 017773 104 KWKPGTSGRVLGSGDY--------------DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASG---SDDGT 166 (366)
Q Consensus 104 ~~~~~~~~~~l~~~~~--------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~~dg~ 166 (366)
-++++ +.+|+-... ...|+..+++.++..... .. . +..++++++.+..+- ..+..
T Consensus 59 ~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~~---~--~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 59 YINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-PD---P--CIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-CS---C--EEEEEEETTEEEEEEESSSSCEE
T ss_pred eEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-cC---C--ccEEEEeCCEEEEEeecCCCCce
Confidence 44666 666665543 246777787766533322 21 1 235677888885554 23445
Q ss_pred EEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEEc-CCC
Q 017773 167 MQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 167 v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
|...++. .. ....+.. + .+ .+++|+++.+..+......|+..++... .....+. +... ..+. ++.
T Consensus 131 Iy~~~~d--Gs-~~~~lt~--~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~-~~~~l~~---~~~~-~~~~P~g~ 196 (302)
T 3s25_A 131 LYRIRID--GE-EKKKIKN--H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQ-SEALFYD---CNCY-KPVVLDDT 196 (302)
T ss_dssp EEEEETT--SC-CCEEEES--S--CC--CCSEEETTEEEEECTTTCCEEEEETTTT-EEEEEEC---SCEE-EEEEEETT
T ss_pred EEEEECC--CC-CeEEEeC--C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCC-CEEEEeC---CCcc-ceeeecCC
Confidence 5555655 33 3333332 1 11 3467777555556544678888888765 2222222 2222 2244 566
Q ss_pred EEEEEeCC--CcEEEEecCCCceeeeeecccceeeeEEEEEecCCCeEEEec--CCCeEEEEEee
Q 017773 246 TLVTAGTD--GCLKLWNVNDSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGS--ETNQVFVYDVR 306 (366)
Q Consensus 246 ~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 306 (366)
+|+-...+ ..|..-++.... ...+... .+ ..++ |++.+|+-+. ..+.|..-++.
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~--~~--~~~~--~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPN-PVVLTEA--NI--EHYN--VYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCC-CEECSCS--CE--EEEE--EETTEEEEEECSSSCEEEEEETT
T ss_pred EEEEEEcCCCcEEEEEECCCCC-eEEEeCC--Cc--ceEE--ECCCEEEEEECCCCcEEEEEECC
Confidence 66554433 356666665443 3333322 22 2244 7888887542 23556655554
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.66 E-value=16 Score=31.97 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=58.8
Q ss_pred ceEEEEECCCCC-EEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecC--CCCcEEEEEcC-
Q 017773 44 SIGVIEFDPSDS-VFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPG--TSGRVLGSGDY- 119 (366)
Q Consensus 44 ~i~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~- 119 (366)
....|+|.|+|. .|+++...|.|++++............+..... .............|+|+|+ .++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQ-SGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBC-CCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceec-cCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 358999999996 444556789999997543211111111100000 0000011346789999984 11344443321
Q ss_pred -C----------CcEEEEeCCC----------CceeEeee-cCCCCceeeEEeccCCCceEEEec
Q 017773 120 -D----------GVVMEYDLEK----------KVPIFERD-EHGGRRVWSVDYSKGDPVLGASGS 162 (366)
Q Consensus 120 -d----------g~i~iw~~~~----------~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~ 162 (366)
+ ..|.-|.+.. .+.+..+. .........|+|.|++..++.+|.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 12223322 111115678999999976644444
No 355
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=86.12 E-value=18 Score=33.43 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=44.0
Q ss_pred cEEEEEEcCCCEEEEEeCCCcEEEEecCCCceeeeeecccc-------------eeeeEEEEEecCCCeEEEe--cCCCe
Q 017773 235 TVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVN-------------NRNFVGLSVWRHGGLLGCG--SETNQ 299 (366)
Q Consensus 235 ~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~--~~dg~ 299 (366)
.|.++.+ +..++++-+.|.++|+|++++++++.+..-... +-..+.+. +.++++- ..+|.
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~----~~~lv~y~P~~~G~ 297 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY----NNTLVTLLPLENGL 297 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES----SSEEEEEETTTTCE
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe----eeEEEEEecCCCCe
Confidence 3444444 578999999999999999999988877654111 11112221 2444432 35689
Q ss_pred EEEEEeecC
Q 017773 300 VFVYDVRWG 308 (366)
Q Consensus 300 i~iwd~~~~ 308 (366)
.++|.+...
T Consensus 298 Fk~~~l~~~ 306 (729)
T 3f7f_A 298 FQMGTLLVD 306 (729)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEEEc
Confidence 999998643
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.45 E-value=21 Score=29.23 Aligned_cols=193 Identities=11% Similarity=0.095 Sum_probs=103.5
Q ss_pred cCCCceEEEecCCCcEEEeeCCCCC-----CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCC---
Q 017773 152 KGDPVLGASGSDDGTMQMWDPRCDG-----GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMV--- 223 (366)
Q Consensus 152 ~~~~~l~~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--- 223 (366)
++.+.+ ++.+.+|.|+-..+..-. +.-...+..... +.+..+...... ..++..+..|.++-+....-.
T Consensus 6 ~~e~~~-v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIV-VMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEE-EEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEE-EEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCC
Confidence 334444 788899999987665210 112223332222 244444443333 456666789988877664321
Q ss_pred -----CC---eeEeecccCcEEEEEE-c---CCCEEEEEeCCCcEEEEecCCC-------ceeeeeecccceeeeEEEEE
Q 017773 224 -----DP---VLVFDGHRKTVTYIRF-L---DVDTLVTAGTDGCLKLWNVNDS-------RVIRTYKGHVNNRNFVGLSV 284 (366)
Q Consensus 224 -----~~---~~~~~~~~~~v~~~~~-~---~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~ 284 (366)
.+ ...+.. ...|..+.. . ++.+++..+..|.++.-.+... .....+.. ...+-.+...
T Consensus 83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~- 159 (312)
T 1suu_A 83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIV- 159 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEE-
T ss_pred ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEe-
Confidence 11 111222 233444432 2 4667888999999988877432 22223332 2233233332
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCce-------EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEE
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEP-------VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFV 357 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 357 (366)
.....++..+.+|.+..+....-.. ...+.+ . ....|.++...+ ++..|+..+..|..+...
T Consensus 160 -~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L------~-~~d~vv~~~~v~---~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 160 -FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL------K-EGDLFVKVLSVK---ENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp -CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC------C-TTCCEEEEEECT---TCSEEEEEETTSEEEEEE
T ss_pred -CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe------C-CCCEEEEEEEEC---CCCeEEEEECCCceEEEE
Confidence 4455677778889988888754111 111111 1 234566665544 344677888899988888
Q ss_pred eccc
Q 017773 358 GKKK 361 (366)
Q Consensus 358 ~~~~ 361 (366)
+..-
T Consensus 229 ~~e~ 232 (312)
T 1suu_A 229 MSKI 232 (312)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 7653
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.71 E-value=46 Score=32.20 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=33.1
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD 138 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 138 (366)
..+.+++..++ ..++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~--~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLST--YNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETT--TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCC--CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 35777888877 8899999999999999999998877654
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.68 E-value=42 Score=31.18 Aligned_cols=204 Identities=8% Similarity=-0.013 Sum_probs=100.3
Q ss_pred eeEEE-EecCCCCcEEEEE-c----CCCcEEEEeCCCCceeEe-eecCCCC------ceeeEEeccCCCceEEEec----
Q 017773 100 LSSLK-WKPGTSGRVLGSG-D----YDGVVMEYDLEKKVPIFE-RDEHGGR------RVWSVDYSKGDPVLGASGS---- 162 (366)
Q Consensus 100 v~~~~-~~~~~~~~~l~~~-~----~dg~i~iw~~~~~~~~~~-~~~~~~~------~v~~i~~~~~~~~l~~~~~---- 162 (366)
...+. ++|+ +++++.+ + .-..++++|+.+++.+.. +....+. ....++|.. +..++++..
T Consensus 131 ~~g~~~~~~~--~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 131 YRGVSNCFQN--PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEECSSS--TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTT
T ss_pred EeceeecCCC--CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCC
Confidence 34444 7777 7766654 2 224799999999876532 1100000 113347763 444424321
Q ss_pred ------CCCcEEEeeCCCCCCceeEeecCCCCCCCeEEEEEcCCCCc----EEEEEe---cCCeEEEEecCCCCCCeeEe
Q 017773 163 ------DDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHPFGSS----LVAAGC---ADKKAYAYDVRKMVDPVLVF 229 (366)
Q Consensus 163 ------~dg~v~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~l~~~~---~d~~i~i~d~~~~~~~~~~~ 229 (366)
....|+.|.+.++..+-...+...... .-.....++++.. .+++.+ ....+++.|..........+
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEY-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTS-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCc-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence 124688898874433444445433322 2334555666642 344433 22456777765432222333
Q ss_pred ecccCcEEEEEEcCCCEEEEE----------eCCCcEEEEecCCCc-------eeeeeecccceeeeEEEEEecCCCeEE
Q 017773 230 DGHRKTVTYIRFLDVDTLVTA----------GTDGCLKLWNVNDSR-------VIRTYKGHVNNRNFVGLSVWRHGGLLG 292 (366)
Q Consensus 230 ~~~~~~v~~~~~~~~~~l~~~----------~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (366)
....... -+...++.+++.. ...+.|...|+.++. ....+-.+......-.+.+..+ .+++
T Consensus 287 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 287 NMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred ecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2222211 1222245444432 246678899987642 2223222333333334444343 5666
Q ss_pred EecCCC--eEEEEEeecCc
Q 017773 293 CGSETN--QVFVYDVRWGE 309 (366)
Q Consensus 293 ~~~~dg--~i~iwd~~~~~ 309 (366)
+...++ .|.++++.+++
T Consensus 365 ~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEEETTEEEEEEECEETTE
T ss_pred EEEECCEEEEEEEECCCCc
Confidence 666666 46777777664
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.43 E-value=36 Score=28.67 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=72.6
Q ss_pred CceeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCceeEeeec------C-------CCCceeeEEeccC--CCceE
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDG----VVMEYDLEKKVPIFERDE------H-------GGRRVWSVDYSKG--DPVLG 158 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~------~-------~~~~v~~i~~~~~--~~~l~ 158 (366)
..|.+|++.|...+.+++ +...| .|... .+.++.-..+.. . ....|.++++.|. ...+
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l- 131 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW- 131 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE-
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE-
Confidence 359999999831244444 44344 34333 223322111111 0 1115778888873 3445
Q ss_pred EEecCCCcEEEeeCCCCCCceeEeecC-----------------CCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCC
Q 017773 159 ASGSDDGTMQMWDPRCDGGKCVSTVQP-----------------SASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 159 ~~~~~dg~v~~~d~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
..+...+.|...+-. ++.-..+.. ......+.+|.++|.....+..+..++.|+..+ .
T Consensus 132 ~~g~~~ggl~~S~Dg---G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~--D 206 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDH---GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST--D 206 (394)
T ss_dssp EEEEETTEEEEESST---TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES--S
T ss_pred EEEecCCcEEEEcCC---CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC--C
Confidence 555555555544322 222222210 011236789999985334455555555454432 2
Q ss_pred CCCCeeEeecc-------------cCcEEEEEEc--CCCEEEEEeCCCcEEEE
Q 017773 222 MVDPVLVFDGH-------------RKTVTYIRFL--DVDTLVTAGTDGCLKLW 259 (366)
Q Consensus 222 ~~~~~~~~~~~-------------~~~v~~~~~~--~~~~l~~~~~d~~i~iw 259 (366)
..+....+... ...+..+.+. +...++.+...+ |...
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 21222222110 1247888887 346677766544 4433
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.05 E-value=14 Score=33.30 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=43.6
Q ss_pred eeEEEEecCCCCcEEEEEcCC------------CcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEE
Q 017773 100 LSSLKWKPGTSGRVLGSGDYD------------GVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGAS 160 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 160 (366)
.--|+|+|. |.+++.-..+ ..+.+.+..+++...-+..+.+.+++.++|+|+++.|++.
T Consensus 478 PDNL~fd~~--G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKA--GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTT--CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCC--CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 356889998 8866654321 2466667777887777777777799999999999988554
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.94 E-value=16 Score=36.17 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=29.3
Q ss_pred EecCCCeEEEecCCCeEEEEEeecCceEEEEecc
Q 017773 284 VWRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFE 317 (366)
Q Consensus 284 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 317 (366)
..++..++++-+.|+++|||++.+++++...++.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3378899999999999999999999998887653
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.22 E-value=18 Score=35.78 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=31.8
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeee
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERD 138 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 138 (366)
.+.+++..++ ..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~--~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLST--YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETT--TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCC--ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4566667776 7899999999999999999998887754
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.08 E-value=42 Score=30.16 Aligned_cols=64 Identities=14% Similarity=-0.005 Sum_probs=44.5
Q ss_pred CceeEEEEecCCCCcEEEEEcC------------CCcEEEEeCCCCceeEeeecCCCCceeeEEeccCCCceEEEecC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDY------------DGVVMEYDLEKKVPIFERDEHGGRRVWSVDYSKGDPVLGASGSD 163 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 163 (366)
.....|.|.++ |.+.+.-.. ...|..++..+++....+.......++.++|+|+++.|++....
T Consensus 476 nsPDnL~fd~~--G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKA--GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTT--CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCC--CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 34677999998 877773221 12577777777876665655544489999999999998665543
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.09 E-value=64 Score=27.07 Aligned_cols=179 Identities=13% Similarity=0.013 Sum_probs=79.6
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecC-C-----------CCceeeEEeccCCCceEEEecCCC
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEH-G-----------GRRVWSVDYSKGDPVLGASGSDDG 165 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~-----------~~~v~~i~~~~~~~~l~~~~~~dg 165 (366)
..+.+|.+.|.. ...|+.+..++.|...+ +.++.-..+... . ...+.++.+.|.+...++.+...+
T Consensus 177 ~~i~~i~~d~~~-~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRD-PKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTC-TTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCC-CCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 357899998842 33344444344444332 223222222110 0 124889999986433335555444
Q ss_pred cEEEeeCCCCCCceeEeecC--CC-CCCCeEEEEEcCCCCcEEEEEec-----------CCeEEEEecCCCCCCeeEeec
Q 017773 166 TMQMWDPRCDGGKCVSTVQP--SA-SRSAVCCVEFHPFGSSLVAAGCA-----------DKKAYAYDVRKMVDPVLVFDG 231 (366)
Q Consensus 166 ~v~~~d~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~ 231 (366)
|...+-. ++.-..+.. .. ....+.+++++|.....+.++.. ++...+|......+....+..
T Consensus 255 -l~~s~D~---G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~ 330 (394)
T 3b7f_A 255 -IYRMDRR---EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR 330 (394)
T ss_dssp -EEEEETT---TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB
T ss_pred -EEEeCCC---CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC
Confidence 4444322 333333321 11 00246778888743344444432 333456655543333333321
Q ss_pred -cc--C-----cEEEEEEc--CCCEEEEEeCCCcEEEEecCCCceeeeeecccceeeeEEEE
Q 017773 232 -HR--K-----TVTYIRFL--DVDTLVTAGTDGCLKLWNVNDSRVIRTYKGHVNNRNFVGLS 283 (366)
Q Consensus 232 -~~--~-----~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
-. . ....++++ +...|+.++.++.|..-+ ..++.-..+..+-..+.++.+.
T Consensus 331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 01 0 01246665 345566666555544322 2233333333333344455443
No 365
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=62.03 E-value=71 Score=26.88 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCcEEEEeCCCC--------ce---eEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC----
Q 017773 111 GRVLGSGDYDGVVMEYDLEKK--------VP---IFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD---- 175 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~---- 175 (366)
....+.-..||.|..|-.... .. ...+.......+..++......+. +.-..||.|+.|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~-~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHC-LALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEE-EEEETTSCEEEEECCGGGTTC
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeE-EEEcCCCCEEEEeCCCCCcCC
Confidence 344555566888888864321 00 111111122234445555545555 55677999999965410
Q ss_pred --C-C--ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC-------e---eEee-cccCcEEEE
Q 017773 176 --G-G--KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP-------V---LVFD-GHRKTVTYI 239 (366)
Q Consensus 176 --~-~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~---~~~~-~~~~~v~~~ 239 (366)
. . .....+.. .....|..++... ...++-..+|.|+.|-.....+. . ..+. .....|..+
T Consensus 141 ~g~~~~~~~p~~v~~-l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~i 216 (389)
T 3kci_A 141 HGNRSPCDRPRVIES-LRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI 216 (389)
T ss_dssp SSSCCCEEEEEECGG-GTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CCCCccCcCCeEecc-cCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEE
Confidence 0 0 01111111 1112566666553 34455568999999975432110 0 0111 122356666
Q ss_pred EEc-CCCEEEEEeCCCcEEEEecCCCce-----------eeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 240 RFL-DVDTLVTAGTDGCLKLWNVNDSRV-----------IRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 240 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
+.. ...+.+.-..||.|..|-...... ...+.... ......++ .-..+.++-..||.|+.|-...
T Consensus 217 a~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~v~--~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT-GLGVVKVE--CGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT-TSCEEEEE--EETTEEEEEETTSCEEEEECCG
T ss_pred EEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC-CCcEEEEe--CCCCEEEEEeCCCeEEEEeCCC
Confidence 654 335667777899999996432111 11111111 11123333 2233444446789999997542
Q ss_pred Cce------EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEec
Q 017773 308 GEP------VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGK 359 (366)
Q Consensus 308 ~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 359 (366)
... .......... .-....|..++... ...+....||.|+.|-..
T Consensus 294 ~GqLG~g~~~~~~~P~~v~--~l~~~~v~~ia~G~-----~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 294 YHRLGHGSDDHVRRPRQVQ--GLQGKKVIAIATGS-----LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GGTTCSSSCCCEEEEEECG--GGTTCCEEEEEECS-----SEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCccccCCeEec--cCCCCCEEEEEecc-----CeEEEECCCCCEEEeeCC
Confidence 110 0000000000 11123466666543 244555689999999654
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=61.62 E-value=73 Score=26.88 Aligned_cols=212 Identities=9% Similarity=0.116 Sum_probs=111.1
Q ss_pred CCceEEEEE-CCCCCEEEEeec--CC---eEEEEEceeccc----ccce-eeeecCceeceeeeecCCceeEEEEecCCC
Q 017773 42 SDSIGVIEF-DPSDSVFATGGI--AR---KIRIYNIKSVLV----DHPV-VAVVDHSKVCDYYICTPAKLSSLKWKPGTS 110 (366)
Q Consensus 42 ~~~i~~~~~-s~~~~~l~t~~~--dg---~i~iw~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 110 (366)
..-.+.++. +.+++++++--+ +| ++-..+...... .... ..+... ..+. +--.|..+...+.
T Consensus 25 n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w-~~~~----~lvsV~~v~iD~~-- 97 (381)
T 3q6k_A 25 NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGH-KTGK----ELTSIYQPVIDDC-- 97 (381)
T ss_dssp GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTC-SSSC----SSSCEEEEEECTT--
T ss_pred ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCC-cccc----ceEEeeEEEEcCC--
Confidence 334567888 688888887643 22 344444332110 0111 122211 0011 1135777777775
Q ss_pred CcEEEE--Ec-------------CCCcEEEEeCCCC--ceeEeeecCC-----CCceeeEEec---cC----CCceEEEe
Q 017773 111 GRVLGS--GD-------------YDGVVMEYDLEKK--VPIFERDEHG-----GRRVWSVDYS---KG----DPVLGASG 161 (366)
Q Consensus 111 ~~~l~~--~~-------------~dg~i~iw~~~~~--~~~~~~~~~~-----~~~v~~i~~~---~~----~~~l~~~~ 161 (366)
+++-+. |. ..-+|.+||+.++ +.++.+.... ...+..+.+. |. +.+..++=
T Consensus 98 ~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD 177 (381)
T 3q6k_A 98 RRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITN 177 (381)
T ss_dssp CEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEE
T ss_pred CcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEc
Confidence 544332 21 1236889999999 8887765432 2357777777 22 23333444
Q ss_pred cCCCcEEEeeCCCCCCceeEeec----CC--------CC----CCCeEEEEEcCC----CCcEEEEEecCCeEEEEec--
Q 017773 162 SDDGTMQMWDPRCDGGKCVSTVQ----PS--------AS----RSAVCCVEFHPF----GSSLVAAGCADKKAYAYDV-- 219 (366)
Q Consensus 162 ~~dg~v~~~d~~~~~~~~~~~~~----~~--------~~----~~~i~~~~~~~~----~~~~l~~~~~d~~i~i~d~-- 219 (366)
...+.|.++|+. +++..+... .. +. ...+..++++|+ ++.+....-....++--..
T Consensus 178 ~~~~gLIVydl~--~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~ 255 (381)
T 3q6k_A 178 FLRGALFIYDHK--KQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKE 255 (381)
T ss_dssp TTTTEEEEEETT--TTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHH
T ss_pred CCCCcEEEEECC--CCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHH
Confidence 456789999998 554444331 11 00 247889999997 5333333333334444332
Q ss_pred -CCC--CCCeeEeeccc---CcEEEEEEc--CCCEEEEEeCCCcEEEEecCC
Q 017773 220 -RKM--VDPVLVFDGHR---KTVTYIRFL--DVDTLVTAGTDGCLKLWNVND 263 (366)
Q Consensus 220 -~~~--~~~~~~~~~~~---~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 263 (366)
+.. ...++.+ +.. ..-..++.. +|.++++--....|..|+..+
T Consensus 256 L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 256 LKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred hhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 221 1122222 222 233345553 566677777888999999875
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.59 E-value=72 Score=25.87 Aligned_cols=205 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred cCCCceEEEecCCCcEEEeeCCCCCCceeEeecCC------CCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC
Q 017773 152 KGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPS------ASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP 225 (366)
Q Consensus 152 ~~~~~l~~~~~~dg~v~~~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 225 (366)
|+.+.+ ++.+.+|.|+--.+. ..+....-... ...+.+..+...... ..++..+..|.++-+....-...
T Consensus 1 ~~e~~~-v~~T~~G~iKr~~~~--~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~ 76 (307)
T 1zi0_A 1 TQEDVV-VTLSHQGYVKYQPLS--EYEAQRRGGKGKSAARIKEEDFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEA 76 (307)
T ss_dssp CCCEEE-EEEETTSEEEEEECC----------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCC
T ss_pred CCCcEE-EEEeCCCEEEEeeHH--HhhhhccCCCCceeeeeCCCCEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCC
Q ss_pred ee-----------EeecccCcEEEEEEc---CCCEEEEEeCCCcEEEEecC-------CCceeeeeecccceeeeEEEEE
Q 017773 226 VL-----------VFDGHRKTVTYIRFL---DVDTLVTAGTDGCLKLWNVN-------DSRVIRTYKGHVNNRNFVGLSV 284 (366)
Q Consensus 226 ~~-----------~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
-. .+.....-+..+... ++.+++..+.+|.++.-.+. .+.....+..+ ..+-.+...
T Consensus 77 ~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~- 154 (307)
T 1zi0_A 77 TRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT- 154 (307)
T ss_dssp CSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE-
T ss_pred CCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe-
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCCC
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPLS 364 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l~ 364 (366)
.....++..+.+|.+..++...-........+.....-.....|.++...+ ++..|+..+..|.++-.++..-+..
T Consensus 155 -~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~---~~~~ll~~T~~G~~Kr~~~~e~~~~ 230 (307)
T 1zi0_A 155 -SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR---GDGAILTATQNGYGKRTAVAEYPTK 230 (307)
T ss_dssp -CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC---SSCEEEEEETTSEEEEECGGGSCCC
T ss_pred -CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec---CCCEEEEEEcCCceEEEEHHHhccC
Q ss_pred CC
Q 017773 365 AQ 366 (366)
Q Consensus 365 ~~ 366 (366)
.+
T Consensus 231 ~R 232 (307)
T 1zi0_A 231 SR 232 (307)
T ss_dssp CT
T ss_pred CC
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.41 E-value=63 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=28.2
Q ss_pred cCCCeEEEecCCCeEEEEEeecCceEEEEec
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGEPVWVHDF 316 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 316 (366)
.+..++++-+.|.++|+|++.+++++....+
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999999988877
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.16 E-value=77 Score=26.04 Aligned_cols=239 Identities=10% Similarity=0.002 Sum_probs=117.6
Q ss_pred CCEEEEeecCCeEEEEEceecccccce-eeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCCcEEEEe---CC
Q 017773 54 DSVFATGGIARKIRIYNIKSVLVDHPV-VAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYD---LE 129 (366)
Q Consensus 54 ~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~---~~ 129 (366)
...+++.+.+|.|+--.+.+-.....- ....+. .+ .....+..+.-... .+.|+.-+..|.++-.. +.
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-----~~-ke~D~~~~~~~~~t--~d~ll~fT~~Gr~y~~~~~~lp 74 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-----GL-KQDDIVAHFFVCST--HDLILFFTTQGRVYRAKAYDLP 74 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------C-----CC-CGGGCEEEEEEEET--TSEEEEEETTSEEEEEEGGGSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-----cc-CCCCEEEEEEEeCC--CCEEEEEeCCCeEEEEEHHHCc
Confidence 346778888998886654432111000 000000 00 00123444444444 55565556677665443 33
Q ss_pred C------CceeEe-eecCCCCceeeEEecc---CCCceEEEecCCCcEEEeeCCCC---CCceeEeecCCCCCCCeEEEE
Q 017773 130 K------KVPIFE-RDEHGGRRVWSVDYSK---GDPVLGASGSDDGTMQMWDPRCD---GGKCVSTVQPSASRSAVCCVE 196 (366)
Q Consensus 130 ~------~~~~~~-~~~~~~~~v~~i~~~~---~~~~l~~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~~~~~i~~~~ 196 (366)
. |.++.. +....+..|..+...+ +...+ +..+.+|.++...+..- ...-...+.... .+.+..+.
T Consensus 75 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~-v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~ 152 (327)
T 3uc1_A 75 EASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYL-VLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAV 152 (327)
T ss_dssp BCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEE-EEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEE
T ss_pred CCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEE-EEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEE
Confidence 2 222111 1112223565554433 34555 88899999998876621 111233333333 23454444
Q ss_pred EcCCCCcEEEEEecCCeEEEEecC--CCC---CC---e--eEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCCc
Q 017773 197 FHPFGSSLVAAGCADKKAYAYDVR--KMV---DP---V--LVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDSR 265 (366)
Q Consensus 197 ~~~~~~~~l~~~~~d~~i~i~d~~--~~~---~~---~--~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 265 (366)
..... ..++..+..|.+..+... .-. .. + ..+. ....|.++... ++..++..+..|.++.-.+....
T Consensus 153 ~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 153 LCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp EECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred EecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcc
Confidence 44443 466677789999888776 321 10 1 1122 23456666655 66789999999999887764322
Q ss_pred e-------eeeee--cccceeeeEEEEEecCCCeEEEecCCCeEEEEEee
Q 017773 266 V-------IRTYK--GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVR 306 (366)
Q Consensus 266 ~-------~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 306 (366)
. +..++ .....+-.+... .+...++..+.+|.+.-++..
T Consensus 231 ~~~R~~~G~~~~~l~~~~d~lv~~~~~--~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 231 VQGRGGKGVLTVMYDRRRGRLVGALIV--DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp BCCTTSCCEESSCCCTTTCSEEEEEEE--CTTCEEEEEEGGGCEEEEEGG
T ss_pred ccCcCCCcEEEEEecCCCCeEEEEEEe--CCCccEEEEcCCCeEEEEehh
Confidence 1 11222 111222222222 334455555666776666654
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=54.18 E-value=81 Score=25.10 Aligned_cols=201 Identities=10% Similarity=-0.033 Sum_probs=103.5
Q ss_pred ceeeEEeccCCCceEEEecCCCcEEE---eeCCCCCCceeEeecCCCCCCCeEEEEEcCC-CCcEEEEEecCCeEEEEec
Q 017773 144 RVWSVDYSKGDPVLGASGSDDGTMQM---WDPRCDGGKCVSTVQPSASRSAVCCVEFHPF-GSSLVAAGCADKKAYAYDV 219 (366)
Q Consensus 144 ~v~~i~~~~~~~~l~~~~~~dg~v~~---~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~ 219 (366)
.+..+.-.....++ +.-+..|.++- +++. ...... + .. ....|..+.. ++ ....++..+.+|.++...+
T Consensus 25 ~~~~~~~~~t~~~l-l~fT~~G~v~~~~~~~lp--~~~~~~-l-l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 25 PVVNILRVPFTEGL-FLVSNRGRVYWIAGSQAL--QGSKVS-L-KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CEEEEEEEETTSCE-EEEETTSEEEEECSHHHH--TSEECC-C-SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred eEEEEEEECCCCEE-EEEcCCCeEEEEEhhhCc--cCcccc-c-CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 55555544445555 44456777664 4433 111111 2 22 2346666644 32 2368888999999999987
Q ss_pred CCCC-----CCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEEEecCCC---------ceeeeeecccceeeeEEEEE
Q 017773 220 RKMV-----DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKLWNVNDS---------RVIRTYKGHVNNRNFVGLSV 284 (366)
Q Consensus 220 ~~~~-----~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~ 284 (366)
.... .....+.. ...+..+... ..+.++..+..|.+..+....- .....+... ..+..+...
T Consensus 98 ~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-d~vv~~~~~- 174 (276)
T 3no0_A 98 AEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-DETSGLRIW- 174 (276)
T ss_dssp GGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-CCEEEEEEE-
T ss_pred HHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-CEEEEEEEe-
Confidence 6541 01111222 2345555444 5567888888998888775421 111223222 223222222
Q ss_pred ecCCCeEEEecCCCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE--EEecc
Q 017773 285 WRHGGLLGCGSETNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV--FVGKK 360 (366)
Q Consensus 285 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i--w~~~~ 360 (366)
+++..++..+..|.++...+..-.....-....... ...+.+..+.... +...++..+.+|.+.. ++.+.
T Consensus 175 -~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~---~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 -NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIK---EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp -SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEES---SEEEEEEEETTSCEEEEEEEGGG
T ss_pred -CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeC---CCCEEEEEcCCCeEEEeeeCHHH
Confidence 556678888888988888765322111000000000 1233454444332 3345666677888777 77654
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=52.36 E-value=1.6e+02 Score=27.81 Aligned_cols=151 Identities=12% Similarity=0.062 Sum_probs=75.3
Q ss_pred CceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCceeEeeecCC------CCceeeEEeccCCCceEEEecCCCc----E
Q 017773 98 AKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDEHG------GRRVWSVDYSKGDPVLGASGSDDGT----M 167 (366)
Q Consensus 98 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~~dg~----v 167 (366)
+.|.+|+++|.. ...++++...+.|...+ +.++.-..+.... ...+.+|++.|.+...++.+..+.. -
T Consensus 15 g~i~~i~~~p~~-~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 15 GYITGIVAHPKT-KDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp SCEEEEEECSSS-TTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CcEEEEEECCCC-CCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 469999999973 34555666566665544 2333222222211 1269999999865433344432211 3
Q ss_pred EEeeCCCCCCceeEeecCCC-------CCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCCeeEeec------ccC
Q 017773 168 QMWDPRCDGGKCVSTVQPSA-------SRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDPVLVFDG------HRK 234 (366)
Q Consensus 168 ~~~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~ 234 (366)
.||.... .++.-..+.... ....+..++++|.....+.++...+.| |-.....+.-..+.. ...
T Consensus 93 ~v~~S~D-gG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSED-RGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESS-TTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECC-CCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCC
Confidence 3443331 343333332110 111356788888655667776644443 333332233333321 124
Q ss_pred cEEEEEEc--CCCEEEEEeCC
Q 017773 235 TVTYIRFL--DVDTLVTAGTD 253 (366)
Q Consensus 235 ~v~~~~~~--~~~~l~~~~~d 253 (366)
.+..+.+. ++..++.+..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 57778876 44556555544
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.58 E-value=74 Score=28.78 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=35.7
Q ss_pred EEEEEecCCCeEEEecCC------------CeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEEe
Q 017773 280 VGLSVWRHGGLLGCGSET------------NQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAG 347 (366)
Q Consensus 280 ~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 347 (366)
+.|+ |.|++++.-..+ +.+.+.+..+++....+.. .....++.++|+| |++.|+..
T Consensus 481 L~fd--~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-------P~gaE~TG~~fsp---Dg~tlfvn 548 (592)
T 3zwu_A 481 LGFD--KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSP---DQKTLFVG 548 (592)
T ss_dssp EEEC--TTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECT---TSSEEEEE
T ss_pred eEEC--CCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-------CCCccCcCeeECC---CCCEEEEE
Confidence 4454 899877765432 2355555556666544432 2357899999999 87777654
No 373
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=42.52 E-value=1.2e+02 Score=26.94 Aligned_cols=61 Identities=5% Similarity=-0.040 Sum_probs=38.7
Q ss_pred cCCCeEEEecCCCeEEEEEeecCc----eEEEEecccccccCCCCceee-EEEeeccCCCceEEEEeCCCCcEEE
Q 017773 286 RHGGLLGCGSETNQVFVYDVRWGE----PVWVHDFEPVTAAGSERGFVS-SVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 286 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
.+-..++.|+.+|.|.=..+..+. .+..+.+ .....+|. .|.+++ +..+|..++.++.++|
T Consensus 411 ~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v------~~~~~pv~~~l~~~~---~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 411 NGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV------FKDGSPILRDMAFSI---NQLYLYVMSERQVTRV 476 (539)
T ss_dssp TTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC------CTTCCCCCSCCEECT---TSSEEEEECSSEEEEE
T ss_pred CCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe------ecCCCccccceEEcc---CCCeEEEEecccccee
Confidence 344567888999987766665332 1222221 11245775 899998 7779999988875554
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.05 E-value=1.5e+02 Score=24.23 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=115.5
Q ss_pred CcEEEEEcCCCcEEEEeCCCC-------ceeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEE---eeCCCC----C
Q 017773 111 GRVLGSGDYDGVVMEYDLEKK-------VPIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQM---WDPRCD----G 176 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~---~d~~~~----~ 176 (366)
...+++.+.+|.|+--.+.+- +-...+....+..+..+........+ +.-+..|.++- +++... .
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~l-l~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLI-LFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEE-EEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEE-EEEeCCCeEEEEEHHHCcCCCccCC
Confidence 457777888888886653221 11111111112144444444444555 33345666554 444411 1
Q ss_pred CceeEe-ecCCCCCCCeEEEEEcC---CCCcEEEEEecCCeEEEEecCCCCCC----e--eEeecccCcEEEEEEc-CCC
Q 017773 177 GKCVST-VQPSASRSAVCCVEFHP---FGSSLVAAGCADKKAYAYDVRKMVDP----V--LVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 177 ~~~~~~-~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~----~--~~~~~~~~~v~~~~~~-~~~ 245 (366)
+.++.. +... ....|..+..-+ +. ..++..+.+|.++...+...... . ..+.. ...+..+... ..+
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e-~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 82 GQHVANLLAFQ-PEERIAQVIQIRGYTDA-PYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGD 158 (327)
T ss_dssp CEEHHHHTTCC-TTCCEEEEEEESSTTSS-SEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTC
T ss_pred CEEHHHccCCC-CCCEEEEEEEeccCCCC-CEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCC
Confidence 222222 2222 233555544333 33 68889999999999887653111 1 12222 3445444444 566
Q ss_pred EEEEEeCCCcEEEEecC--CCc---------eeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce----
Q 017773 246 TLVTAGTDGCLKLWNVN--DSR---------VIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP---- 310 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---- 310 (366)
.++..+..|.+..+... .-. ..-.+.. ...+ +++...+++..++..+..|.++.-.+..-..
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~V--v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~ 235 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRL--LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 235 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCE--EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEE--EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcC
Confidence 78888889988877766 211 1112221 1222 2222224566788888899888877643221
Q ss_pred ---EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecc
Q 017773 311 ---VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKK 360 (366)
Q Consensus 311 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 360 (366)
+..+.+ ..-.+.+..+.... +...++..+.+|.+.-+....
T Consensus 236 ~~G~~~~~l------~~~~d~lv~~~~~~---~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 236 GKGVLTVMY------DRRRGRLVGALIVD---DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SCCEESSCC------CTTTCSEEEEEEEC---TTCEEEEEEGGGCEEEEEGGG
T ss_pred CCcEEEEEe------cCCCCeEEEEEEeC---CCccEEEEcCCCeEEEEehhh
Confidence 111111 11123344444333 223455566677776666543
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=39.10 E-value=1.7e+02 Score=24.59 Aligned_cols=173 Identities=10% Similarity=0.063 Sum_probs=90.3
Q ss_pred CCCceEEEEECCCCCEEEE--eec-------------CCeEEEEEceec--ccccceeeeecCceeceeeeecCCceeEE
Q 017773 41 VSDSIGVIEFDPSDSVFAT--GGI-------------ARKIRIYNIKSV--LVDHPVVAVVDHSKVCDYYICTPAKLSSL 103 (366)
Q Consensus 41 h~~~i~~~~~s~~~~~l~t--~~~-------------dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 103 (366)
+--.|..+...+++++-+. |-. --.|.+||+.+. +..+... +.... . ...+.+..+
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~-~p~~~-----~-~~~S~l~di 157 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYY-FPTRL-----V-EKPTYFGGF 157 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEE-CCGGG-----C-CCGGGEEEE
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEE-CCHHh-----c-ccCCccceE
Confidence 3456778888877753222 211 125778888887 5443211 11110 0 112457888
Q ss_pred EEe-c--C--CCCcEEE-EEcCCCcEEEEeCCCCceeEeee----cCC-------------CCceeeEEeccC----CCc
Q 017773 104 KWK-P--G--TSGRVLG-SGDYDGVVMEYDLEKKVPIFERD----EHG-------------GRRVWSVDYSKG----DPV 156 (366)
Q Consensus 104 ~~~-~--~--~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~----~~~-------------~~~v~~i~~~~~----~~~ 156 (366)
.+. . . .++.++. +=...+.|.++|+.+++.-+... ... ...+..|+++|+ ++.
T Consensus 158 ~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~ 237 (381)
T 3q6k_A 158 AVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRP 237 (381)
T ss_dssp EEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCE
T ss_pred EEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeE
Confidence 887 2 1 0123333 33346789999999886544331 000 126778888887 666
Q ss_pred eEEEecCCCcEEEee---CCCCC-CceeEeecCCCCCCCeEEEEEc-CCCCcEEEEEecCCeEEEEecCC
Q 017773 157 LGASGSDDGTMQMWD---PRCDG-GKCVSTVQPSASRSAVCCVEFH-PFGSSLVAAGCADKKAYAYDVRK 221 (366)
Q Consensus 157 l~~~~~~dg~v~~~d---~~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~ 221 (366)
|.+..-....++--. ++..+ ...++.+-..+....-..+++. .+| .++++--....|..|+..+
T Consensus 238 LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 238 AYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTS
T ss_pred EEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCC
Confidence 644443333333322 12111 1122222111111234456776 555 7777777888999999876
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=37.91 E-value=96 Score=27.64 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=42.5
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc----eeEeeecCC-CCcee-eEEeccCCCceEEEecCCCcEEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV----PIFERDEHG-GRRVW-SVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~-~~~v~-~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
..++++.....+-..++.|+.+|.|.-..+.... ...++.... +.+|. .|.++++..+| +.++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~L-yv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYL-YVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEE-EEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeE-EEEecccccee
Confidence 4666666654335678889999987665554321 222333222 33785 89999988877 66665544443
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=35.83 E-value=1.8e+02 Score=23.64 Aligned_cols=190 Identities=11% Similarity=0.049 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCcEEEEeCCCCc-------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCCC-C------
Q 017773 111 GRVLGSGDYDGVVMEYDLEKKV-------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCD-G------ 176 (366)
Q Consensus 111 ~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~~-~------ 176 (366)
..++++.+.+|.|+--.+..-+ -...+....+..+..+........+ +..+..|.++-+....- .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~l-l~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYL-FMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEE-EEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEE-EEEECCCeEEEEEHHHCCCCCccCC
Confidence 6788888999999887654321 1111111222245555554445555 55567787666554310 1
Q ss_pred Ccee-EeecCCCCCCCeEEEEEcC---CCCcEEEEEecCCeEEEEecCCCC------CCeeEeecccCcEEEEEEc-CCC
Q 017773 177 GKCV-STVQPSASRSAVCCVEFHP---FGSSLVAAGCADKKAYAYDVRKMV------DPVLVFDGHRKTVTYIRFL-DVD 245 (366)
Q Consensus 177 ~~~~-~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~-~~~ 245 (366)
+.++ ..+.... ...|..+...+ .. ..++..+..|.++...+.... .....+.. .+.+..+... +++
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~-~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDD-AYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTT-CEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCC-CEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 1110 0112222 23454443332 23 567777899999988875431 11112332 4556666554 567
Q ss_pred EEEEEeCCCcEEEEecCCC---------ceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeec
Q 017773 246 TLVTAGTDGCLKLWNVNDS---------RVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRW 307 (366)
Q Consensus 246 ~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 307 (366)
.++..+.+|.+..+....- .....+.. ...+ +.+..-.++..+++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~v--v~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLF--VKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCE--EEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEE--EEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 7888899999988887542 11122222 1222 2222224566677888889888887753
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.40 E-value=1.5e+02 Score=26.74 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=35.0
Q ss_pred eEEEEEecCCCeEEEecC------------CCeEEEEEeecCceEEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 279 FVGLSVWRHGGLLGCGSE------------TNQVFVYDVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
-+.+. ++|.+.++... .+.+..++..+++....+.. .....++.++|+| |++.|+.
T Consensus 480 nL~fd--~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-------P~~aEpnGiafSP---D~ktLfV 547 (592)
T 4a9v_A 480 GLGFD--KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSP---DQKTLFV 547 (592)
T ss_dssp EEEEC--TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECT---TSSEEEE
T ss_pred ceEEC--CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-------CCCccccCCEECC---CCCEEEE
Confidence 45555 88887773321 12456666656765544421 1246799999999 8877766
Q ss_pred e
Q 017773 347 G 347 (366)
Q Consensus 347 ~ 347 (366)
+
T Consensus 548 ~ 548 (592)
T 4a9v_A 548 G 548 (592)
T ss_dssp E
T ss_pred E
Confidence 4
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=31.53 E-value=1.9e+02 Score=22.87 Aligned_cols=205 Identities=12% Similarity=0.028 Sum_probs=106.3
Q ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEEceecccccceeeeecCceeceeeeecCCceeEEEEecCCCCcEEEEEcCCC
Q 017773 42 SDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHPVVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDG 121 (366)
Q Consensus 42 ~~~i~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 121 (366)
.+.+..+.......+|+.-+..|.++--.+..-...... .+ ......|..+.- ++.+...++..+.+|
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-~l----------l~~~e~i~~v~~-~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKV-SL----------KSREEKIVGAFI-REKFGNRLLLATKKG 90 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEEC-CC----------SSTTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccc-cc----------CCCCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence 445555555545555666667887664333221100000 00 112345666644 310267899999999
Q ss_pred cEEEEeCCCCc----eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeCCC-----CCCceeEeecCCCCCCCe
Q 017773 122 VVMEYDLEKKV----PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRC-----DGGKCVSTVQPSASRSAV 192 (366)
Q Consensus 122 ~i~iw~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~~~-----~~~~~~~~~~~~~~~~~i 192 (366)
.++-..+..-. -...+....+..+..+........+ +..+..|.+..++... ....-+..+.... ...|
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~i-ll~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~v 168 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHI-LLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDET 168 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEE-EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCE
T ss_pred EEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEE-EEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEE
Confidence 99998765421 1111212222255555555455556 6667788887776541 0112222333322 2456
Q ss_pred EEEEEcCCCCcEEEEEecCCeEEEEecCCCC------CCeeEeecccCcEEEEEEc-CCCEEEEEeCCCcEEE--EecC
Q 017773 193 CCVEFHPFGSSLVAAGCADKKAYAYDVRKMV------DPVLVFDGHRKTVTYIRFL-DVDTLVTAGTDGCLKL--WNVN 262 (366)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i--wd~~ 262 (366)
..+...+++ ..++..+..|.++...+.... +-+..+ ...+.+..+... +++.++..+.+|.+.. ++..
T Consensus 169 v~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 169 SGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 555544444 577777899999888775321 112222 223444444333 4456666677777766 6654
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.44 E-value=2.1e+02 Score=23.31 Aligned_cols=248 Identities=8% Similarity=-0.022 Sum_probs=0.0
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCc--eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEEEeeC---------CCC
Q 017773 107 PGTSGRVLGSGDYDGVVMEYDLEKKV--PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDP---------RCD 175 (366)
Q Consensus 107 ~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~~~d~---------~~~ 175 (366)
|+ ...+++.+.+|.|+--.+..-+ ....+....+..+..+........+ +..+..|.++-+.. .
T Consensus 3 ~~--e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~l-l~fT~~Gr~~~~~~~elp~~~r~a-- 77 (323)
T 1wp5_A 3 AS--EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVL-LLFTNKGNYLYCPVHELPDIRWKD-- 77 (323)
T ss_dssp SC--CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEE-EEEETTSEEEEEEGGGSCBCCTTS--
T ss_pred cC--CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEE-EEEECCCEEEEEEHHHCcCCCCCC--
Q ss_pred CCceeEeecCCCCCCCeEEEEEcCC---CCcEEEEEecCCeEEEEecC-------CCCCCeeEeecccCcEEEEEEc-CC
Q 017773 176 GGKCVSTVQPSASRSAVCCVEFHPF---GSSLVAAGCADKKAYAYDVR-------KMVDPVLVFDGHRKTVTYIRFL-DV 244 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~~-~~ 244 (366)
.+.++..+-.......|..+..-++ + ..++..+.+|.++...+. ........+... +.+..+... ..
T Consensus 78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~-~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~ 155 (323)
T 1wp5_A 78 LGQHIANIIPIDRDEEIIKAIPINDFELN-GYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGM 155 (323)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCTTSS-CEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSC
T ss_pred CCcChhhccCCCCCCEEEEEEEecccCCC-ceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCC
Q ss_pred CEEEEEeCCCcEEEEecC---------CCceeeeeecccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCceEE--E
Q 017773 245 DTLVTAGTDGCLKLWNVN---------DSRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVW--V 313 (366)
Q Consensus 245 ~~l~~~~~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 313 (366)
+.++..+.+|.+..+... .|.....+.....-+....+. ++...++..+..|..+..++..-.... .
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~--~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~ 233 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLIT--SKDESIVVATQRGAVKKMKLTEFEKATRAK 233 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEC--CTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEc--CCCcEEEEEECCCceEEEEHHHccccCCCC
Q ss_pred EecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEEEEecccCCCCC
Q 017773 314 HDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKKPLSAQ 366 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~l~~~ 366 (366)
...............+..+.... ++..++..+.+|.+.-..+..-++..+
T Consensus 234 kGv~~~~~~~~~~~~l~~~~~v~---~~~~i~~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 234 RGVVILRELKANPHRISGFVVAQ---DSDTIYLQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp CCEECSCCCSSSCCCEEEEEEEC---TTCEEEEEETTSCEEEEEGGGSCBCCS
T ss_pred CCEECeeecCCCCceEEEEEEeC---CCCeEEEEeCCCeEEEEEhhhcCccCc
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.92 E-value=1.8e+02 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=35.9
Q ss_pred ceEEEecCCCcEEEeeCCCCC------CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE
Q 017773 156 VLGASGSDDGTMQMWDPRCDG------GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 216 (366)
.+++.|+.+|.|.-.-+.... ...+..+.......+|..|.++++. ..|++++.++.+++
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEECCeEEEE
Confidence 345778888887543332111 1133344433334589999999987 78888877765554
No 382
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=30.82 E-value=2.5e+02 Score=24.99 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=43.3
Q ss_pred ceeEEEEecCCCCcEEEEEcCCCcEEEEeCC-CC--ceeEeeecCCCCce-eeEEeccCCCceEEEecCCCcEEE
Q 017773 99 KLSSLKWKPGTSGRVLGSGDYDGVVMEYDLE-KK--VPIFERDEHGGRRV-WSVDYSKGDPVLGASGSDDGTMQM 169 (366)
Q Consensus 99 ~v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~--~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~~dg~v~~ 169 (366)
..+.|+.....+-..++.|+.+|.|.-.-+. .+ ..+.++......+| ..+.+++....| +.++.++.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~L-yv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHL-YVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEE-EEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEE-EEEeCCEEEEE
Confidence 4666766554224667788899988755443 21 22333333334478 489998887777 67777766555
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.39 E-value=2.5e+02 Score=24.70 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=34.7
Q ss_pred CeEEEecCCCeEEEEEee-cCc--eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 289 GLLGCGSETNQVFVYDVR-WGE--PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
..+..|+.+|.|.=.-+. .+. ......++.... .....+|..|.+++ +..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v-~~~~~pI~~m~l~~---~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV-FREPTTISAMELST---KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECC-SSSCCCCCEEEEET---TTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee-cCCCCccceEEEcC---CCCEEEEEECCeEEEE
Confidence 356788888876543332 211 000010111111 12346889999999 6779999998886654
No 384
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=25.96 E-value=2.7e+02 Score=25.13 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=36.0
Q ss_pred ceEEEecCCCcEEEeeCCCCC----CceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE
Q 017773 156 VLGASGSDDGTMQMWDPRCDG----GKCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216 (366)
Q Consensus 156 ~l~~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 216 (366)
.+++.|+.+|.|.-.-..... ...+..+.......+|..+.++++. ..|++++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~-~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAER-RKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTT-TEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCC-CEEEEEecceEEEc
Confidence 455778889987643332111 1122334332345589999999986 67778777665554
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=25.78 E-value=2.4e+02 Score=22.05 Aligned_cols=145 Identities=10% Similarity=-0.062 Sum_probs=73.2
Q ss_pred cEEEEEecCCeEEEEecCCCCCCeeEeecccCcEEEEEE-cCCCEEEEEeCCCcEEEEecCC-------Cceee---eee
Q 017773 203 SLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRF-LDVDTLVTAGTDGCLKLWNVND-------SRVIR---TYK 271 (366)
Q Consensus 203 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~iwd~~~-------~~~~~---~~~ 271 (366)
..+++.+.+|.|+--...........+.... .+..+.. +..+.++..+..|.++-+.... |.++. .+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3556667888887666544211112233333 3334333 3555666677788766554322 22211 122
Q ss_pred cccceeeeEEEEEecCCCeEEEecCCCeEEEEEeecCce-----EEEEecccccccCCCCceeeEEEeeccCCCceEEEE
Q 017773 272 GHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEP-----VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVA 346 (366)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 346 (366)
. ...+ +++....++.+|+..+..|.++...+..-.. ...+.+ . ..+.+..+...+. ++..|+.
T Consensus 82 ~-~e~I--v~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L------~-~~d~lv~~~~~~~--~~~~i~l 149 (256)
T 1zvt_A 82 P-GATV--DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL------P-ENAHVMPPVVIED--ASDMLLA 149 (256)
T ss_dssp T-TCCE--EEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC------C-TTCCBCCCEECCC--TTCEEEE
T ss_pred C-CCEE--EEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE------C-CCCEEEEEEEecC--CCCEEEE
Confidence 1 1222 2222213566788889999999888743211 111111 1 1234444444311 2346777
Q ss_pred eCCCCcEEEEEecc
Q 017773 347 GGSDGLLHVFVGKK 360 (366)
Q Consensus 347 ~~~dg~i~iw~~~~ 360 (366)
.+.+|.+..+.+..
T Consensus 150 ~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 150 ITQAGRMLMFPVSD 163 (256)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EcCCCeEEEEEHHH
Confidence 88899888887754
No 386
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=25.75 E-value=2.1e+02 Score=25.87 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=35.0
Q ss_pred CeEEEecCCCeEEEEEeecCc----eEEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 289 GLLGCGSETNQVFVYDVRWGE----PVWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 289 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
..+..|+.+|.|.-.-+.... .....++.. .....+|..|.+++ +...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~----~~~~~pi~~L~ls~---~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQP----FRRAAAIQTMSLDA---ERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECC----CSSCCCCCEEEEET---TTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeec----cCCCCceeeEEEcC---CCCEEEEEecceEEEc
Confidence 356677788876533322211 111111111 12356789999998 6668888888876665
No 387
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=25.72 E-value=2.7e+02 Score=25.64 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=34.5
Q ss_pred eEEEecCCCeEEEE-EeecCceEEEEecccccccCCCCceeeEEEeeccCCCc--eEEEEeCCCCcEEE
Q 017773 290 LLGCGSETNQVFVY-DVRWGEPVWVHDFEPVTAAGSERGFVSSVCWRRVGEDE--CTLVAGGSDGLLHV 355 (366)
Q Consensus 290 ~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~l~s~~~dg~i~i 355 (366)
.++.|+.+|.|.=. ....+..+. .+. .. .....+|..|.+++ +. .+|..++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~-ee~---~~-~~~~~pI~~l~l~~---~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHII-EET---QL-FQDFEPVQTLLLSS---KKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEE-EEE---EC-CTTCCCCCEEEECC---SSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEE-EEe---cc-cCCCCcceeeEecc---CCCccEEEEEEcCeEEEE
Confidence 67778888876433 332222111 111 11 12346788999998 55 78888888876654
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.46 E-value=2.5e+02 Score=25.80 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=35.3
Q ss_pred CeEEEecCCCeEE-EEEeecCce--EEEEecccccccCCCCceeeEEEeeccCCCceEEEEeCCCCcEEE
Q 017773 289 GLLGCGSETNQVF-VYDVRWGEP--VWVHDFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHV 355 (366)
Q Consensus 289 ~~l~~~~~dg~i~-iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~i 355 (366)
..++.|+.+|.|. +.-...+.. .....++.... .....+|..|.+++ +.++|..++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v-~~~~~pI~~L~ld~---~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV-FREPTTISAMELST---KQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEEC-SSSCCCCCEEEEET---TTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEee-cCCCceeeeEEEcC---CCCEEEEEECCEEEEE
Confidence 3567788888765 332222110 01111111111 23457899999999 7779999998886655
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.26 E-value=2.5e+02 Score=25.86 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=35.8
Q ss_pred eEEEecCCCcEE-EeeCCCCCC-----ceeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEE
Q 017773 157 LGASGSDDGTMQ-MWDPRCDGG-----KCVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYA 216 (366)
Q Consensus 157 l~~~~~~dg~v~-~~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i 216 (366)
+++.|+.+|.|. +.-...... ..+..+.......+|..|.++++. ..|++++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~-~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTT-TEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCC-CEEEEEECCEEEEE
Confidence 457788888875 332221111 123334443455689999999987 78888877765554
No 390
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.03 E-value=3.5e+02 Score=22.56 Aligned_cols=197 Identities=12% Similarity=0.111 Sum_probs=96.6
Q ss_pred eeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCc-----------eeEeeecCCCCceeeEEeccCCCceEEEecCCCcEE
Q 017773 100 LSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKV-----------PIFERDEHGGRRVWSVDYSKGDPVLGASGSDDGTMQ 168 (366)
Q Consensus 100 v~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~dg~v~ 168 (366)
+..++.+.. ....+.-..||.|..|-....- ....+.......|..++.. ..+. +.-..+|.|+
T Consensus 107 ~~~v~i~~G--~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs-~alt~~G~v~ 181 (389)
T 3kci_A 107 IKKVAVNSG--GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHS-ACVTAAGDLY 181 (389)
T ss_dssp EEEEEECTT--CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEE-EEEETTSCEE
T ss_pred eeEEEECcC--CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeE-EEEeCCCeEE
Confidence 444566554 5566666778999999643210 0111111122246666553 2333 4556789999
Q ss_pred EeeCCCC-------CCc--eeEeecCCCCCCCeEEEEEcCCCCcEEEEEecCCeEEEEecCCCCCC-------e---eEe
Q 017773 169 MWDPRCD-------GGK--CVSTVQPSASRSAVCCVEFHPFGSSLVAAGCADKKAYAYDVRKMVDP-------V---LVF 229 (366)
Q Consensus 169 ~~d~~~~-------~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~---~~~ 229 (366)
.|-.... ... ....+.. .....|..++..... ...++-..+|.|+.|-.....+. . ..+
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~-~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEA-LQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred EeCCCCCCCcCCCCCcccccceEecc-cCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 9975410 000 0111111 112256666654422 34555568999999965432111 0 111
Q ss_pred ec-ccCcEEEEEEcCCCEEEEEeCCCcEEEEecCCCce-----------eeeeecccceeeeEEEEEecCCCeEEEecCC
Q 017773 230 DG-HRKTVTYIRFLDVDTLVTAGTDGCLKLWNVNDSRV-----------IRTYKGHVNNRNFVGLSVWRHGGLLGCGSET 297 (366)
Q Consensus 230 ~~-~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 297 (366)
.. ....|..++.- ....+.-..||.|..|=...... ...+.... ....+.++ .-....++-..|
T Consensus 260 ~~~~~~~v~~v~~G-~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~v~~ia--~G~~h~~al~~~ 335 (389)
T 3kci_A 260 DSLTGLGVVKVECG-SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ-GKKVIAIA--TGSLHCVCCTED 335 (389)
T ss_dssp GGGTTSCEEEEEEE-TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT-TCCEEEEE--ECSSEEEEEETT
T ss_pred cccCCCcEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCC-CCCEEEEE--eccCeEEEECCC
Confidence 11 11235555543 34455557889999996532110 11111111 11233333 334445555678
Q ss_pred CeEEEEEeec
Q 017773 298 NQVFVYDVRW 307 (366)
Q Consensus 298 g~i~iwd~~~ 307 (366)
|.|+.|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999997653
No 391
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=21.29 E-value=3.2e+02 Score=24.28 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=40.1
Q ss_pred eeEEEEEecCCCeEEEecCCCeEEEEEee-cCc--eEEEEecccccccCCCCcee-eEEEeeccCCCceEEEEeCCCCcE
Q 017773 278 NFVGLSVWRHGGLLGCGSETNQVFVYDVR-WGE--PVWVHDFEPVTAAGSERGFV-SSVCWRRVGEDECTLVAGGSDGLL 353 (366)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~s~~~dg~i 353 (366)
+.+++.....-..+..|+.+|.|.-.-+. ++. .+..+.+ ....+| ..|.+++ +...|..++.++.+
T Consensus 390 T~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-------~~~~pi~~~l~l~~---~~~~Lyv~s~~~V~ 459 (528)
T 3ol2_B 390 TAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-------QQGSAVSRDLTFDG---TFEHLYVMTQSTLL 459 (528)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-------STTSCCCSCCEECT---TSSEEEEECSSCEE
T ss_pred EEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-------CCCCcceeeEEEec---CCCEEEEEeCCEEE
Confidence 34444432334466688888987644443 211 1222222 234567 4899988 66789999888876
Q ss_pred EE
Q 017773 354 HV 355 (366)
Q Consensus 354 ~i 355 (366)
+|
T Consensus 460 ~v 461 (528)
T 3ol2_B 460 KV 461 (528)
T ss_dssp EE
T ss_pred EE
Confidence 65
Done!