BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017774
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 38/368 (10%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
RA +L+ +M +AGL + D GN+ GR EG N A +L+GSHLD+V + G FDG LG+
Sbjct: 36 RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
+ + ++ + G + P+EV+AF+DEEG RF+ +GS A+AG LP AL D
Sbjct: 96 LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXX 246
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 XXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 306
V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERN 312
Query: 307 VSCIVER-----------KLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVC 355
V ER ++K A+ AA +++ G +P SGA HD++ ++ + +
Sbjct: 313 VRVTTERLQEMPPVLCSDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPICPIG 368
Query: 356 SLLCRLNN 363
+ R +
Sbjct: 369 MIFVRSQD 376
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
pdb|1Z2L|B Chain B, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
Length = 423
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 168/365 (46%), Gaps = 32/365 (8%)
Query: 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
SP + ++ M +GL T D +GN++GR+ G + +L GSH+DTVV+ G D
Sbjct: 35 SPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLD 94
Query: 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSA 120
G G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 95 GQFGALAAWLAIDWLKT--QYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDV 152
Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
+ D G + +DA++ + L + + ++E+HIEQG VLE G +GV
Sbjct: 153 RNICDAKGNSFVDAMKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIGV 208
Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRX 240
V I GQ R VT+ G HAGT PM R+D + A R+C + G
Sbjct: 209 VNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA-------FSRICHQSVEKAKRMG-- 259
Query: 241 XXXXXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQ 300
V T G++ P+ NV+PG+ TFT+D R D A +L N +
Sbjct: 260 ---------DPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRA 310
Query: 301 ICEKRSVSCIVER-------KLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTK 353
IC++ + ++ + A L + + V+ SGAGHDA +
Sbjct: 311 ICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVP 370
Query: 354 VCSLL 358
C +
Sbjct: 371 TCMIF 375
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
pdb|2IMO|B Chain B, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
Length = 423
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 163/366 (44%), Gaps = 32/366 (8%)
Query: 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
SP + ++ +GL T D +GN++GR+ G + +L GSH+DTVV+ G
Sbjct: 34 YSPEWLETQQQFKKRXAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNL 93
Query: 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVS 119
DG G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 94 DGQFGALAAWLAIDWLKT--QYGAPLRTVEVVAXAEEEGSRFPYVFWGSKNIFGLANPDD 151
Query: 120 ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLG 179
+ D G + +DA + + L + + ++E+HIEQG VLE G +G
Sbjct: 152 VRNICDAKGNSFVDAXKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIG 207
Query: 180 VVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239
VV I GQ R VT+ G HAGT P R+D + A R+C + G
Sbjct: 208 VVNAIVGQRRYTVTLNGESNHAGTTPXGYRRDTVYA-------FSRICHQSVEKAKRXG- 259
Query: 240 XXXXXXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLY 299
V T G++ P+ NV+PG+ TFT+D R D A +L N
Sbjct: 260 ----------DPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDXR 309
Query: 300 QICEKRSVSCIV-----ERKLKSAS--YAALKRMTGATQHEIPVIMSGAGHDAMAMSHLT 352
IC++ + + E + A L + + V SGAGHDA +
Sbjct: 310 AICDEXDIGIDIDLWXDEEPVPXNKELVATLTELCEREKLNYRVXHSGAGHDAQIFAPRV 369
Query: 353 KVCSLL 358
C +
Sbjct: 370 PTCXIF 375
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 53/357 (14%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI-- 301
T G I + P + N+IPGEV+FT+D R D T+L E + + ++
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 302 ----------CEKRSVSCIV---ERKLKSASYAALKRMTGATQHEIPVIMSGAGHDA 345
E VS V E ++ S +A + + ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQF---KKDQVRQIWSGAGHDS 398
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 53/357 (14%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI-- 301
T G I + P + N+IPGEV+FT+D R D T+L E + + ++
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 302 ----------CEKRSVSCIV---ERKLKSASYAALKRMTGATQHEIPVIMSGAGHDA 345
E VS V E ++ S +A + + ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQF---KKDQVRQIWSGAGHDS 398
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 53/357 (14%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + + EG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNAEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI-- 301
T G I + P + N+IPGEV+FT+D R D T+L E + + ++
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 302 ----------CEKRSVSCIV---ERKLKSASYAALKRMTGATQHEIPVIMSGAGHDA 345
E VS V E ++ S +A + + ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQF---KKDQVRQIWSGAGHDS 398
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 53/357 (14%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI-- 301
T G I + P + N+IPGEV+FT+D D T+L E + + ++
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFAHPSDDVLATMLKEAAAEFDRLIK 344
Query: 302 ----------CEKRSVSCIV---ERKLKSASYAALKRMTGATQHEIPVIMSGAGHDA 345
E VS V E ++ S +A + + ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQF---KKDQVRQIWSGAGHDS 398
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 152/356 (42%), Gaps = 53/356 (14%)
Query: 13 RQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIIT 68
R W E G + VD +GN G N + GSHLDT +AG +DG LG++
Sbjct: 74 RDWFTNECESLGCKVKVDKIGNXFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVLA 132
Query: 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRVS 124
+ L+ K + V V+ + +EEG RF + GS+ + L + V
Sbjct: 133 GLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLXSVG 190
Query: 125 DKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGI 184
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G+
Sbjct: 191 EDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTGV 246
Query: 185 AGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXX 244
KVTV G HAGT P +R+D + +++ IV + +
Sbjct: 247 QAYNWQKVTVHGVGAHAGTTPWRLRKDALLXSSKXIVAASEIAQRHNGLF---------- 296
Query: 245 XXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQI--- 301
T G I + P + N+IPGEV+FT+D R D T L E + + ++
Sbjct: 297 ----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATXLKEAAAEFDRLIKI 346
Query: 302 ---------CEKRSVSCIV---ERKLKSASYAALKRMTGATQHEIPVIMSGAGHDA 345
E VS V E ++ S +A + + ++ I SGAGHD+
Sbjct: 347 NDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQF---KKDQVRQIWSGAGHDS 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,050,774
Number of Sequences: 62578
Number of extensions: 383305
Number of successful extensions: 928
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 19
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)