Query 017776
Match_columns 366
No_of_seqs 307 out of 3080
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 9E-65 1.9E-69 510.4 33.1 347 1-353 162-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 6.1E-50 1.3E-54 400.9 29.5 276 1-352 153-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 4.1E-48 8.9E-53 389.2 29.6 280 1-352 161-441 (441)
4 COG0548 ArgB Acetylglutamate k 99.9 1.9E-27 4.1E-32 219.7 11.7 126 1-201 136-264 (265)
5 PRK04531 acetylglutamate kinas 99.9 1.1E-26 2.3E-31 229.0 17.1 216 1-300 122-340 (398)
6 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 1.2E-24 2.5E-29 204.0 10.0 124 1-200 146-271 (271)
7 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 7E-24 1.5E-28 201.0 12.5 126 1-200 154-280 (280)
8 COG1246 ArgA N-acetylglutamate 99.9 1E-23 2.2E-28 178.5 11.0 145 206-350 1-146 (153)
9 CHL00202 argB acetylglutamate 99.9 3.4E-22 7.5E-27 189.9 12.1 126 1-201 154-283 (284)
10 KOG2436 Acetylglutamate kinase 99.9 1.3E-23 2.8E-28 205.3 0.1 284 1-291 229-518 (520)
11 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 2.5E-21 5.5E-26 180.6 11.8 122 1-200 123-248 (248)
12 PRK00942 acetylglutamate kinas 99.8 1.4E-20 2.9E-25 179.1 12.2 128 1-203 155-283 (283)
13 PLN02512 acetylglutamate kinas 99.8 3.7E-20 8E-25 177.8 11.9 126 1-201 179-308 (309)
14 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.8 7.5E-20 1.6E-24 173.6 12.1 125 1-200 151-279 (279)
15 cd04238 AAK_NAGK-like AAK_NAGK 99.8 1.4E-19 3E-24 169.7 12.2 125 1-200 131-256 (256)
16 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.8 5.1E-19 1.1E-23 165.6 12.0 123 1-200 129-252 (252)
17 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.8 6E-19 1.3E-23 165.5 11.8 120 1-200 138-257 (257)
18 PRK14058 acetylglutamate/acety 99.8 6.9E-19 1.5E-23 166.1 11.9 122 1-202 142-267 (268)
19 PRK12352 putative carbamate ki 99.8 1.8E-18 4E-23 165.4 10.7 122 1-201 179-314 (316)
20 cd04241 AAK_FomA-like AAK_FomA 99.7 1.9E-17 4.1E-22 154.9 10.3 128 1-200 120-252 (252)
21 TIGR00761 argB acetylglutamate 99.7 3E-17 6.4E-22 151.7 10.4 75 1-75 128-204 (231)
22 PRK07757 acetyltransferase; Pr 99.7 9.2E-16 2E-20 131.8 16.8 129 206-336 2-130 (152)
23 PRK10146 aminoalkylphosphonic 99.7 6.8E-16 1.5E-20 130.9 12.5 125 205-329 3-139 (144)
24 PRK07922 N-acetylglutamate syn 99.6 8.6E-15 1.9E-19 128.9 15.5 126 205-332 5-131 (169)
25 cd04242 AAK_G5K_ProB AAK_G5K_P 99.6 9.3E-16 2E-20 143.4 9.8 126 1-200 116-250 (251)
26 cd02115 AAK Amino Acid Kinases 99.6 1.6E-15 3.4E-20 141.1 9.2 118 1-200 121-248 (248)
27 PTZ00330 acetyltransferase; Pr 99.6 1.5E-14 3.3E-19 123.0 14.6 124 205-328 6-141 (147)
28 PRK12454 carbamate kinase-like 99.6 2.9E-15 6.3E-20 142.5 11.0 122 1-201 178-312 (313)
29 cd04256 AAK_P5CS_ProBA AAK_P5C 99.6 4.2E-15 9.2E-20 141.1 11.0 126 1-200 143-283 (284)
30 COG0263 ProB Glutamate 5-kinas 99.6 3.6E-15 7.8E-20 141.5 9.6 132 1-204 123-261 (369)
31 TIGR00746 arcC carbamate kinas 99.6 7.9E-15 1.7E-19 140.3 11.2 122 1-201 175-309 (310)
32 PRK12308 bifunctional arginino 99.6 3.4E-14 7.3E-19 148.7 16.6 129 206-336 464-592 (614)
33 PRK05429 gamma-glutamyl kinase 99.6 6.2E-15 1.3E-19 145.1 9.9 129 1-203 125-262 (372)
34 PTZ00489 glutamate 5-kinase; P 99.6 1.2E-14 2.7E-19 136.3 10.5 128 1-203 121-260 (264)
35 PRK09411 carbamate kinase; Rev 99.6 1.5E-14 3.3E-19 136.2 10.6 73 1-73 169-251 (297)
36 TIGR03827 GNAT_ablB putative b 99.6 1.1E-13 2.4E-18 130.5 16.3 125 204-329 114-246 (266)
37 PF13527 Acetyltransf_9: Acety 99.5 5.8E-14 1.3E-18 116.7 11.6 119 207-326 1-127 (127)
38 PRK13402 gamma-glutamyl kinase 99.5 2E-14 4.3E-19 140.8 9.9 129 1-203 121-258 (368)
39 PRK03624 putative acetyltransf 99.5 1.7E-13 3.7E-18 114.6 13.9 121 205-330 2-132 (140)
40 PRK12314 gamma-glutamyl kinase 99.5 3.6E-14 7.7E-19 133.8 9.9 127 1-202 126-264 (266)
41 PRK12353 putative amino acid k 99.5 6E-14 1.3E-18 135.0 10.7 75 1-75 178-265 (314)
42 PRK12686 carbamate kinase; Rev 99.5 5E-14 1.1E-18 134.3 9.9 75 1-76 176-264 (312)
43 PF00696 AA_kinase: Amino acid 99.5 6.4E-14 1.4E-18 129.9 9.9 74 1-74 127-211 (242)
44 PHA00673 acetyltransferase dom 99.5 3E-13 6.6E-18 116.2 13.1 120 210-329 11-147 (154)
45 KOG3216 Diamine acetyltransfer 99.5 1E-12 2.2E-17 110.5 14.8 124 205-328 3-146 (163)
46 TIGR02382 wecD_rffC TDP-D-fuco 99.5 4.9E-13 1.1E-17 119.8 13.9 123 206-329 44-186 (191)
47 PRK09491 rimI ribosomal-protei 99.5 6.6E-13 1.4E-17 113.3 13.9 118 206-329 2-126 (146)
48 PF00583 Acetyltransf_1: Acety 99.5 4.9E-13 1.1E-17 102.4 11.6 75 250-324 1-83 (83)
49 PF13673 Acetyltransf_10: Acet 99.5 7.7E-13 1.7E-17 107.9 13.5 103 215-323 1-117 (117)
50 PLN02706 glucosamine 6-phospha 99.5 4.5E-13 9.8E-18 114.7 12.1 122 205-329 6-145 (150)
51 cd04235 AAK_CK AAK_CK: Carbama 99.5 1.9E-13 4E-18 130.3 10.1 120 1-200 174-307 (308)
52 PRK10975 TDP-fucosamine acetyl 99.5 9.9E-13 2.1E-17 118.0 14.3 123 206-329 47-189 (194)
53 PRK09831 putative acyltransfer 99.5 7.1E-13 1.5E-17 113.5 12.5 114 206-330 1-128 (147)
54 TIGR01027 proB glutamate 5-kin 99.5 1.8E-13 3.9E-18 134.3 10.0 130 1-203 117-254 (363)
55 PRK10140 putative acetyltransf 99.5 1.6E-12 3.4E-17 112.1 14.6 123 206-329 4-142 (162)
56 TIGR02406 ectoine_EctA L-2,4-d 99.5 9.7E-13 2.1E-17 114.3 13.0 120 208-327 1-127 (157)
57 PRK12354 carbamate kinase; Rev 99.5 2.9E-13 6.3E-18 128.5 10.4 120 1-203 168-301 (307)
58 PF13523 Acetyltransf_8: Acety 99.4 2.3E-12 5.1E-17 110.6 13.2 125 208-332 1-145 (152)
59 PLN02418 delta-1-pyrroline-5-c 99.4 6.7E-13 1.5E-17 140.7 11.6 136 1-210 142-290 (718)
60 PF13420 Acetyltransf_4: Acety 99.4 7.2E-12 1.6E-16 107.5 15.9 121 208-329 1-140 (155)
61 TIGR01575 rimI ribosomal-prote 99.4 2.1E-12 4.5E-17 106.9 12.0 109 215-329 1-117 (131)
62 PRK10314 putative acyltransfer 99.4 1.5E-12 3.3E-17 112.7 11.3 120 208-329 9-135 (153)
63 TIGR01092 P5CS delta l-pyrroli 99.4 8.2E-13 1.8E-17 140.2 11.4 133 1-206 134-279 (715)
64 PF13508 Acetyltransf_7: Acety 99.4 6E-12 1.3E-16 96.2 12.1 75 246-325 4-79 (79)
65 COG1247 Sortase and related ac 99.4 6.5E-12 1.4E-16 109.5 13.7 126 206-332 2-147 (169)
66 KOG3139 N-acetyltransferase [G 99.4 7.8E-12 1.7E-16 106.4 12.5 85 245-329 55-147 (165)
67 TIGR03103 trio_acet_GNAT GNAT- 99.4 7.1E-12 1.5E-16 129.4 14.4 122 204-329 81-218 (547)
68 PRK10514 putative acetyltransf 99.4 1.5E-11 3.2E-16 104.5 13.6 114 206-330 2-128 (145)
69 KOG1154 Gamma-glutamyl kinase 99.4 1.6E-12 3.4E-17 116.6 7.7 130 1-203 138-276 (285)
70 cd04246 AAK_AK-DapG-like AAK_A 99.3 4.7E-12 1E-16 117.6 9.8 74 1-74 119-203 (239)
71 cd04261 AAK_AKii-LysC-BS AAK_A 99.3 4.7E-12 1E-16 117.6 9.7 74 1-74 119-203 (239)
72 cd04240 AAK_UC AAK_UC: Unchara 99.3 5.4E-12 1.2E-16 114.3 9.1 68 2-69 85-157 (203)
73 COG0456 RimI Acetyltransferase 99.3 1.5E-11 3.3E-16 107.7 11.6 125 203-329 9-155 (177)
74 cd04260 AAK_AKi-DapG-BS AAK_AK 99.3 9E-12 1.9E-16 116.1 9.8 75 2-76 125-210 (244)
75 TIGR01686 FkbH FkbH-like domai 99.3 6.6E-11 1.4E-15 114.6 15.2 122 203-326 184-319 (320)
76 PRK10151 ribosomal-protein-L7/ 99.3 1.6E-10 3.4E-15 102.1 16.0 125 204-329 9-156 (179)
77 PRK15130 spermidine N1-acetylt 99.3 8.4E-11 1.8E-15 104.4 13.8 123 205-328 6-145 (186)
78 COG3153 Predicted acetyltransf 99.3 1.4E-10 3.1E-15 101.3 14.6 143 204-354 2-152 (171)
79 cd04255 AAK_UMPK-MosAB AAK_UMP 99.3 1.7E-11 3.6E-16 115.2 9.3 72 1-72 128-213 (262)
80 cd04234 AAK_AK AAK_AK: Amino A 99.2 2.8E-11 6.2E-16 111.5 9.5 75 1-75 105-191 (227)
81 TIGR03448 mycothiol_MshD mycot 99.2 2.8E-10 6E-15 108.3 16.6 125 205-329 149-289 (292)
82 PRK10562 putative acetyltransf 99.2 1.3E-10 2.7E-15 99.2 12.7 112 208-329 2-126 (145)
83 PRK01346 hypothetical protein; 99.2 1E-10 2.2E-15 117.0 14.0 123 204-328 5-136 (411)
84 TIGR03585 PseH pseudaminic aci 99.2 1.3E-10 2.9E-15 99.6 12.1 121 207-329 2-139 (156)
85 KOG3396 Glucosamine-phosphate 99.2 1.3E-10 2.7E-15 96.0 10.8 124 206-329 7-145 (150)
86 PHA01807 hypothetical protein 99.2 3.1E-10 6.8E-15 98.1 12.6 112 210-321 8-136 (153)
87 PRK10809 ribosomal-protein-S5- 99.2 6.6E-10 1.4E-14 99.4 15.0 124 205-329 17-167 (194)
88 TIGR03448 mycothiol_MshD mycot 99.2 4.1E-10 8.9E-15 107.1 13.8 114 209-328 4-128 (292)
89 cd02169 Citrate_lyase_ligase C 99.2 1.6E-10 3.5E-15 110.3 10.4 76 246-327 7-83 (297)
90 PF13302 Acetyltransf_3: Acety 99.2 8.2E-10 1.8E-14 92.8 13.6 118 206-324 2-142 (142)
91 PRK13688 hypothetical protein; 99.1 2.6E-10 5.6E-15 99.1 9.6 108 205-329 17-134 (156)
92 cd04239 AAK_UMPK-like AAK_UMPK 99.1 2E-10 4.3E-15 106.0 8.8 66 2-72 112-184 (229)
93 PRK08210 aspartate kinase I; R 99.1 4.6E-10 9.9E-15 112.1 9.8 75 2-76 127-212 (403)
94 TIGR00124 cit_ly_ligase [citra 99.1 4.3E-09 9.3E-14 102.1 15.3 81 243-329 29-110 (332)
95 PRK00358 pyrH uridylate kinase 99.1 6.4E-10 1.4E-14 102.8 9.2 63 2-69 114-183 (231)
96 cd04244 AAK_AK-LysC-like AAK_A 99.1 8.5E-10 1.8E-14 105.6 10.2 73 3-75 179-262 (298)
97 TIGR02076 pyrH_arch uridylate 99.0 1.3E-09 2.9E-14 99.9 9.9 116 3-200 98-220 (221)
98 PRK06635 aspartate kinase; Rev 99.0 1.4E-09 3.1E-14 108.5 9.6 74 1-74 121-205 (404)
99 COG0549 ArcC Carbamate kinase 99.0 1.7E-09 3.8E-14 100.1 8.8 122 1-201 177-311 (312)
100 TIGR00657 asp_kinases aspartat 99.0 2E-09 4.3E-14 108.7 10.0 74 2-75 162-246 (441)
101 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.0 2.9E-09 6.3E-14 97.8 9.3 117 2-200 97-220 (221)
102 COG1608 Predicted archaeal kin 99.0 2.3E-09 4.9E-14 97.3 8.3 129 1-201 120-251 (252)
103 TIGR00656 asp_kin_monofn aspar 99.0 2.6E-09 5.7E-14 106.5 9.7 75 2-76 123-208 (401)
104 cd04254 AAK_UMPK-PyrH-Ec UMP k 98.9 3.5E-09 7.5E-14 97.9 9.4 64 2-70 114-184 (231)
105 PRK06291 aspartate kinase; Pro 98.9 6.2E-09 1.3E-13 105.8 10.1 72 2-73 182-264 (465)
106 PRK14558 pyrH uridylate kinase 98.8 1.2E-08 2.7E-13 94.2 9.3 65 2-71 112-183 (231)
107 PRK08841 aspartate kinase; Val 98.8 1.3E-08 2.8E-13 101.0 9.8 74 2-75 122-206 (392)
108 PF08445 FR47: FR47-like prote 98.8 2.2E-08 4.8E-13 78.1 8.5 57 271-328 22-82 (86)
109 PRK07431 aspartate kinase; Pro 98.8 1.7E-08 3.7E-13 105.5 10.3 75 1-75 121-208 (587)
110 KOG3235 Subunit of the major N 98.8 4.1E-09 9E-14 89.3 4.6 124 206-329 2-136 (193)
111 KOG2488 Acetyltransferase (GNA 98.8 4.2E-08 9.1E-13 85.8 10.5 116 214-329 54-183 (202)
112 TIGR02075 pyrH_bact uridylate 98.8 2.1E-08 4.6E-13 92.8 9.3 64 2-70 115-186 (233)
113 COG2153 ElaA Predicted acyltra 98.8 1.8E-08 3.9E-13 84.5 6.6 93 239-331 44-139 (155)
114 KOG3397 Acetyltransferases [Ge 98.7 1.3E-07 2.9E-12 81.3 9.7 114 214-327 19-140 (225)
115 KOG3234 Acetyltransferase, (GN 98.7 6.8E-08 1.5E-12 82.0 7.4 147 206-358 2-157 (173)
116 KOG3138 Predicted N-acetyltran 98.6 5E-08 1.1E-12 86.4 6.0 124 205-329 16-153 (187)
117 COG3393 Predicted acetyltransf 98.6 2.3E-07 4.9E-12 85.5 10.1 78 250-328 182-262 (268)
118 cd04301 NAT_SF N-Acyltransfera 98.6 4.7E-07 1E-11 63.8 8.4 62 248-309 2-64 (65)
119 TIGR01211 ELP3 histone acetylt 98.5 8.2E-07 1.8E-11 91.0 11.9 84 246-329 412-517 (522)
120 TIGR02078 AspKin_pair Pyrococc 98.5 9.9E-07 2.1E-11 85.4 10.5 71 2-72 151-231 (327)
121 PRK08373 aspartate kinase; Val 98.5 1E-06 2.2E-11 85.8 10.6 72 2-73 161-242 (341)
122 COG1670 RimL Acetyltransferase 98.4 2.2E-06 4.8E-11 74.6 11.4 76 254-330 77-160 (187)
123 PRK14557 pyrH uridylate kinase 98.4 7.9E-07 1.7E-11 83.0 8.9 112 3-204 120-240 (247)
124 PF14542 Acetyltransf_CG: GCN5 98.4 2.9E-06 6.2E-11 65.0 10.4 70 249-321 3-72 (78)
125 COG3981 Predicted acetyltransf 98.4 3.1E-06 6.7E-11 73.3 11.1 83 246-329 70-160 (174)
126 COG3818 Predicted acetyltransf 98.4 1.2E-06 2.6E-11 72.1 6.8 128 204-334 6-154 (167)
127 cd04259 AAK_AK-DapDC AAK_AK-Da 98.3 2.8E-06 6E-11 81.3 10.2 68 8-75 181-259 (295)
128 COG3053 CitC Citrate lyase syn 98.3 1.2E-05 2.5E-10 75.0 13.0 111 205-328 3-115 (352)
129 cd04243 AAK_AK-HSDH-like AAK_A 98.3 3.2E-06 7E-11 80.8 9.6 74 3-76 173-258 (293)
130 PF13718 GNAT_acetyltr_2: GNAT 98.3 1.7E-05 3.6E-10 71.1 13.2 103 245-352 27-195 (196)
131 PRK14556 pyrH uridylate kinase 98.2 3.8E-06 8.2E-11 78.1 8.5 63 2-69 130-199 (249)
132 PF04768 DUF619: Protein of un 98.0 3.4E-05 7.3E-10 67.8 9.6 132 186-325 2-143 (170)
133 cd04257 AAK_AK-HSDH AAK_AK-HSD 98.0 3.1E-05 6.7E-10 74.2 9.9 67 8-74 180-257 (294)
134 PF12568 DUF3749: Acetyltransf 98.0 0.00033 7.1E-09 58.1 13.4 104 211-327 10-124 (128)
135 PF12746 GNAT_acetyltran: GNAT 97.9 0.00029 6.2E-09 66.3 14.2 90 236-329 157-248 (265)
136 cd04245 AAK_AKiii-YclM-BS AAK_ 97.9 8E-05 1.7E-09 71.1 10.4 73 3-75 169-252 (288)
137 PRK05925 aspartate kinase; Pro 97.9 6.9E-05 1.5E-09 75.6 10.5 71 4-74 161-242 (440)
138 COG1444 Predicted P-loop ATPas 97.9 0.00019 4E-09 75.9 12.9 80 269-354 530-612 (758)
139 PRK09084 aspartate kinase III; 97.8 9.9E-05 2.1E-09 74.8 10.5 72 3-75 170-252 (448)
140 COG2388 Predicted acetyltransf 97.8 8.2E-05 1.8E-09 59.3 7.7 64 245-309 15-78 (99)
141 PRK08961 bifunctional aspartat 97.8 0.0001 2.2E-09 80.6 10.3 67 9-75 191-268 (861)
142 COG4552 Eis Predicted acetyltr 97.7 4.3E-05 9.3E-10 73.2 5.5 83 245-328 39-127 (389)
143 PRK09436 thrA bifunctional asp 97.7 0.00017 3.6E-09 78.3 10.7 70 5-74 179-259 (819)
144 cd04258 AAK_AKiii-LysC-EC AAK_ 97.7 0.00029 6.4E-09 67.3 10.9 71 6-76 176-257 (292)
145 cd04247 AAK_AK-Hom3 AAK_AK-Hom 97.6 0.00066 1.4E-08 65.3 11.2 69 7-75 189-268 (306)
146 COG0527 LysC Aspartokinases [A 97.6 0.00051 1.1E-08 69.4 10.5 75 2-76 168-253 (447)
147 PF08444 Gly_acyl_tr_C: Aralky 97.5 0.0003 6.4E-09 54.8 6.3 72 250-327 4-79 (89)
148 PF00765 Autoind_synth: Autoin 97.4 0.0026 5.6E-08 56.7 11.8 116 213-328 7-155 (182)
149 COG0454 WecD Histone acetyltra 97.3 0.00037 8.1E-09 53.5 5.0 44 276-323 87-130 (156)
150 KOG4144 Arylalkylamine N-acety 97.3 0.00018 4E-09 61.1 3.2 120 205-329 11-162 (190)
151 PF04958 AstA: Arginine N-succ 97.3 0.0027 5.8E-08 61.6 11.6 125 205-329 1-189 (342)
152 TIGR03694 exosort_acyl putativ 97.3 0.0044 9.4E-08 57.7 12.2 122 206-327 8-197 (241)
153 KOG4135 Predicted phosphogluco 97.2 0.0077 1.7E-07 51.1 11.6 123 206-328 14-170 (185)
154 PRK10456 arginine succinyltran 97.1 0.0017 3.6E-08 62.9 7.7 89 206-294 2-143 (344)
155 PRK09034 aspartate kinase; Rev 97.1 0.0034 7.3E-08 63.8 10.3 73 4-76 170-253 (454)
156 PF13480 Acetyltransf_6: Acety 97.0 0.017 3.6E-07 47.9 12.4 98 212-311 27-135 (142)
157 PRK13834 putative autoinducer 97.0 0.013 2.9E-07 53.2 12.4 115 213-327 15-164 (207)
158 TIGR03244 arg_catab_AstA argin 96.8 0.0042 9.1E-08 60.0 7.4 86 208-293 2-140 (336)
159 COG2054 Uncharacterized archae 96.7 0.0038 8.3E-08 54.7 6.3 66 5-70 90-162 (212)
160 TIGR03245 arg_AOST_alph argini 96.7 0.0045 9.7E-08 59.8 7.0 87 208-294 2-142 (336)
161 TIGR03243 arg_catab_AOST argin 96.6 0.0056 1.2E-07 59.1 7.0 87 208-294 2-141 (335)
162 COG5628 Predicted acetyltransf 96.5 0.013 2.8E-07 47.9 7.4 85 238-324 30-119 (143)
163 PF06852 DUF1248: Protein of u 96.5 0.026 5.6E-07 50.0 10.1 75 253-328 55-137 (181)
164 COG0528 PyrH Uridylate kinase 96.5 0.02 4.4E-07 52.5 9.5 66 3-73 120-193 (238)
165 cd04248 AAK_AK-Ectoine AAK_AK- 96.5 0.031 6.7E-07 53.6 11.0 70 7-76 189-269 (304)
166 COG3916 LasI N-acyl-L-homoseri 96.3 0.073 1.6E-06 47.9 11.5 117 212-328 13-163 (209)
167 PRK09181 aspartate kinase; Val 96.1 0.034 7.3E-07 56.9 10.1 70 7-76 195-275 (475)
168 PRK09466 metL bifunctional asp 96.1 0.013 2.8E-07 63.7 7.3 71 8-78 185-266 (810)
169 KOG2036 Predicted P-loop ATPas 96.0 0.02 4.2E-07 59.7 7.3 86 270-360 614-752 (1011)
170 COG1243 ELP3 Histone acetyltra 95.7 0.014 3E-07 58.2 4.9 51 279-329 459-510 (515)
171 PLN02551 aspartokinase 95.5 0.045 9.8E-07 56.6 8.1 72 6-77 230-313 (521)
172 COG3882 FkbH Predicted enzyme 95.3 0.042 9.1E-07 55.2 6.5 124 204-329 412-551 (574)
173 PF13880 Acetyltransf_13: ESCO 95.0 0.025 5.4E-07 42.1 3.1 30 270-299 5-34 (70)
174 COG3138 AstA Arginine/ornithin 94.9 0.055 1.2E-06 50.7 5.8 86 206-291 2-140 (336)
175 PF01853 MOZ_SAS: MOZ/SAS fami 94.4 0.13 2.8E-06 45.8 6.6 48 255-303 66-113 (188)
176 cd04264 DUF619-NAGS DUF619 dom 94.1 0.19 4.1E-06 40.2 6.5 52 248-299 11-63 (99)
177 COG5630 ARG2 Acetylglutamate s 93.6 0.13 2.9E-06 49.9 5.5 110 213-326 344-458 (495)
178 cd04265 DUF619-NAGS-U DUF619 d 93.0 0.38 8.3E-06 38.4 6.5 50 250-299 14-63 (99)
179 TIGR03019 pepcterm_femAB FemAB 92.9 1.3 2.9E-05 42.8 11.5 114 214-329 158-282 (330)
180 PLN03238 probable histone acet 92.7 0.26 5.6E-06 46.6 5.9 57 246-303 128-188 (290)
181 KOG2535 RNA polymerase II elon 92.5 0.18 3.8E-06 48.7 4.6 50 280-329 497-548 (554)
182 COG3375 Uncharacterized conser 91.7 1.4 3E-05 40.2 9.1 104 208-311 5-115 (266)
183 PF02799 NMT_C: Myristoyl-CoA: 91.6 2.8 6.1E-05 37.5 10.9 115 208-327 31-164 (190)
184 PTZ00064 histone acetyltransfe 91.3 0.72 1.6E-05 46.7 7.6 57 246-303 357-417 (552)
185 PF04377 ATE_C: Arginine-tRNA- 91.3 3.7 8E-05 34.4 10.7 62 247-310 41-102 (128)
186 PLN03239 histone acetyltransfe 91.1 0.46 1E-05 46.1 5.9 57 246-303 186-246 (351)
187 COG2401 ABC-type ATPase fused 90.7 0.18 3.9E-06 50.3 2.6 58 269-326 240-306 (593)
188 PRK01305 arginyl-tRNA-protein 90.1 8.2 0.00018 35.9 13.0 63 247-311 146-208 (240)
189 KOG2747 Histone acetyltransfer 90.0 0.36 7.8E-06 47.6 4.1 55 247-302 236-292 (396)
190 TIGR03827 GNAT_ablB putative b 89.7 1.7 3.8E-05 40.7 8.5 66 285-357 20-86 (266)
191 PLN00104 MYST -like histone ac 89.4 0.43 9.3E-06 48.0 4.2 57 246-303 279-339 (450)
192 KOG2779 N-myristoyl transferas 89.1 3.3 7.1E-05 40.3 9.7 117 206-327 261-396 (421)
193 PRK14852 hypothetical protein; 88.6 3.1 6.7E-05 46.1 10.3 122 207-328 30-181 (989)
194 PF12261 T_hemolysin: Thermost 88.2 5.1 0.00011 35.6 9.7 96 251-351 41-171 (179)
195 PF01233 NMT: Myristoyl-CoA:pr 87.1 9.1 0.0002 33.2 10.3 102 206-307 24-147 (162)
196 PF13444 Acetyltransf_5: Acety 85.4 1.8 3.9E-05 34.3 5.0 47 246-292 32-100 (101)
197 PF09390 DUF1999: Protein of u 84.8 24 0.00051 30.1 11.7 121 206-327 1-140 (161)
198 PF09924 DUF2156: Uncharacteri 84.6 12 0.00027 35.5 11.3 105 206-311 133-246 (299)
199 PF05301 Mec-17: Touch recepto 82.8 2.8 6.1E-05 34.5 5.0 48 272-320 48-97 (120)
200 KOG3698 Hyaluronoglucosaminida 78.6 5.8 0.00013 41.0 6.6 127 203-329 677-879 (891)
201 PHA01733 hypothetical protein 76.1 13 0.00027 32.1 7.1 116 208-327 5-131 (153)
202 PF02474 NodA: Nodulation prot 75.8 6.9 0.00015 34.4 5.5 95 269-364 84-188 (196)
203 COG2898 Uncharacterized conser 73.6 14 0.0003 38.4 7.9 66 245-311 393-458 (538)
204 COG5027 SAS2 Histone acetyltra 72.3 1.8 4E-05 41.8 1.2 101 195-300 186-292 (395)
205 KOG4601 Uncharacterized conser 71.1 5.1 0.00011 36.7 3.7 94 206-299 21-137 (264)
206 cd04266 DUF619-NAGS-FABP DUF61 65.5 31 0.00067 28.0 6.9 31 268-298 37-68 (108)
207 KOG2696 Histone acetyltransfer 62.5 11 0.00025 36.9 4.4 46 255-300 199-247 (403)
208 PF11124 Pho86: Inorganic phos 60.4 64 0.0014 31.0 8.9 85 248-332 172-276 (304)
209 PHA00432 internal virion prote 58.3 24 0.00052 29.9 5.1 78 246-328 38-121 (137)
210 PRK02983 lysS lysyl-tRNA synth 55.1 72 0.0016 36.4 9.8 59 251-311 427-485 (1094)
211 cd03173 DUF619-like DUF619 dom 54.9 63 0.0014 25.7 6.8 46 253-299 17-62 (98)
212 PF04339 DUF482: Protein of un 54.6 1.3E+02 0.0028 30.0 10.4 114 211-329 210-330 (370)
213 PLN00083 photosystem II subuni 52.9 19 0.00041 27.9 3.3 44 7-50 55-98 (101)
214 cd08353 Glo_EDI_BRP_like_7 Thi 52.3 44 0.00095 27.3 6.0 29 304-332 4-35 (142)
215 KOG3014 Protein involved in es 51.5 70 0.0015 29.8 7.4 31 269-299 182-212 (257)
216 KOG2779 N-myristoyl transferas 50.9 66 0.0014 31.6 7.4 54 252-305 143-202 (421)
217 KOG0456 Aspartate kinase [Amin 49.7 14 0.0003 36.7 2.7 71 6-76 257-339 (559)
218 PHA02769 hypothetical protein; 49.5 13 0.00029 30.3 2.2 42 288-329 94-140 (154)
219 COG5092 NMT1 N-myristoyl trans 45.4 94 0.002 30.1 7.4 122 206-327 259-413 (451)
220 PRK00756 acyltransferase NodA; 45.3 57 0.0012 28.6 5.5 57 269-326 84-144 (196)
221 PF07395 Mig-14: Mig-14; Inte 42.2 1.8E+02 0.004 27.4 8.8 100 206-305 127-239 (264)
222 cd07235 MRD Mitomycin C resist 39.4 36 0.00077 26.9 3.4 22 306-327 3-27 (122)
223 PF11305 DUF3107: Protein of u 37.2 48 0.001 25.0 3.3 27 27-53 20-47 (74)
224 cd04263 DUF619-NAGK-FABP DUF61 36.6 98 0.0021 24.6 5.3 32 268-299 31-62 (98)
225 TIGR02990 ectoine_eutA ectoine 34.3 91 0.002 28.9 5.6 43 289-331 105-154 (239)
226 COG2935 Putative arginyl-tRNA: 33.6 4.1E+02 0.0088 24.9 10.5 57 253-311 159-215 (253)
227 PF02388 FemAB: FemAB family; 32.2 1.8E+02 0.0039 29.1 7.7 102 246-354 36-160 (406)
228 PRK15312 antimicrobial resista 30.0 2.9E+02 0.0062 26.6 8.1 87 206-292 155-252 (298)
229 PRK13497 chemoreceptor glutami 29.0 4.1E+02 0.0089 23.6 8.5 69 287-355 70-158 (184)
230 cd09012 Glo_EDI_BRP_like_24 Th 28.6 65 0.0014 25.6 3.2 21 307-327 4-27 (124)
231 cd07267 THT_Oxygenase_N N-term 25.7 69 0.0015 25.0 2.9 25 304-328 4-31 (113)
232 PF04725 PsbR: Photosystem II 24.1 1.2E+02 0.0026 23.9 3.6 43 7-49 48-93 (99)
233 cd08344 MhqB_like_N N-terminal 23.7 86 0.0019 24.4 3.0 25 304-328 3-30 (112)
234 PRK13489 chemoreceptor glutami 23.6 5.9E+02 0.013 23.6 9.0 72 287-358 81-174 (233)
235 PLN00053 photosystem II subuni 23.4 1.2E+02 0.0027 24.4 3.7 43 7-49 66-111 (117)
236 PF08901 DUF1847: Protein of u 23.4 1.8E+02 0.0039 25.2 5.0 36 292-327 43-86 (157)
237 COG3473 Maleate cis-trans isom 23.3 1.5E+02 0.0034 27.0 4.7 32 297-328 111-149 (238)
238 cd08342 HPPD_N_like N-terminal 20.6 1.3E+02 0.0028 24.5 3.6 24 306-329 3-30 (136)
239 cd08356 Glo_EDI_BRP_like_17 Th 20.1 77 0.0017 25.0 2.0 18 312-329 13-30 (113)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=9e-65 Score=510.36 Aligned_cols=347 Identities=81% Similarity=1.256 Sum_probs=312.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccccCCcccccCCHHHHHHHHHHhhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQS 80 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~ 80 (366)
|+++|++|.||||+|+|+|++|++||||+|++|+++|.+|+|+|||||||+++++.+|++|++|+++|++++++++.+|+
T Consensus 162 i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~~ 241 (515)
T PLN02825 162 IKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQS 241 (515)
T ss_pred HHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhcc
Confidence 56899999999999999999999999999999999999999999999999999899999999999999999998777788
Q ss_pred HHHHhHHhhhhccccccccCCCCCC-----ccccCCCCCcc--chhhhhhccCCCccCCCCCCcccccccccccchhhhh
Q 017776 81 EIAANYVKAVAEEDITCFGHSDSIG-----SVYSSQNGKTF--SERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 153 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
.+||++.+|+++++.+ .+.+ ..+++.++..+ +-++...|.++.+++++.|. ...++|+.++.+++++
T Consensus 242 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 315 (515)
T PLN02825 242 EIAANYVKAVGGEDYS-----YSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGL-SGEQGFAIGGEERLSR 315 (515)
T ss_pred hhhhhhhhhccccccc-----cccccccccccccccccccccccccccccccccccccCcccc-cccccccccchhhchh
Confidence 8999999999988622 2221 22222222222 12344456666667665553 5679999999999999
Q ss_pred ccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccceEEeCcccCHHHHHHHHHHHHHcCcCc
Q 017776 154 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALV 233 (366)
Q Consensus 154 ~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~ 233 (366)
...+.++|.+|+.||+.||+|+|+++++.+++|+.||||++|+||||+.++|..||+++.+|++.|.+|+++....++..
T Consensus 316 ~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~lv 395 (515)
T PLN02825 316 LNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGILV 395 (515)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cCCHHHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHH
Q 017776 234 RRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTR 313 (366)
Q Consensus 234 ~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~ 313 (366)
.++++.+..++..|++++.||+++||+.+.++.+...++|.+++|+|+|||+|+|++||++++++|+++|++.+++.+++
T Consensus 396 ~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~ 475 (515)
T PLN02825 396 RRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTR 475 (515)
T ss_pred CCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCc
Confidence 89999999999999999999999999999987777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEeccccccHHHHhhhcCCCCceeEEeecC
Q 017776 314 TADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 353 (366)
Q Consensus 314 a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L~ 353 (366)
+.+||+|+||+..+.+.+|..|+..||++|+|++|+|.|.
T Consensus 476 a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 476 TADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKLL 515 (515)
T ss_pred HHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999999983
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=6.1e-50 Score=400.92 Aligned_cols=276 Identities=44% Similarity=0.759 Sum_probs=255.4
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+++|++|+|||++|+|++.+|+++|||+|++|++||.+|+|+|||||||++|+ +++|++|++|+.+++++++.. .
T Consensus 153 l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~-~-- 229 (429)
T TIGR01890 153 IRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAER-L-- 229 (429)
T ss_pred HHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHh-c--
Confidence 467999999999999999999999999999999999999999999999999955 567999999999999999854 1
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
.+ || |.+
T Consensus 230 ----------------------------------------------------~~-~~--------------------~~~ 236 (429)
T TIGR01890 230 ----------------------------------------------------GS-ET--------------------TRR 236 (429)
T ss_pred ----------------------------------------------------cC-CC--------------------cHH
Confidence 11 21 588
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHH
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEE 239 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~ 239 (366)
||++|..|+..|++++||++++.+++++.|+|+++|.||+|..++|+.||+++.+|++++.+++++.....+..+++++.
T Consensus 237 kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~ 316 (429)
T TIGR01890 237 LLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSREY 316 (429)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888777888888
Q ss_pred HHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHH
Q 017776 240 LLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFK 319 (366)
Q Consensus 240 l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~ 319 (366)
+..+...+++++.+++++||+.+.++.+...++|..++|+|+|||+|+|++||++++++++++|++.+++.++++.+||+
T Consensus 317 l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY~ 396 (429)
T TIGR01890 317 LEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWFR 396 (429)
T ss_pred HHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHHH
Confidence 88888888999999999999999877656788999999999999999999999999999999999999888878899999
Q ss_pred hCCCeEeccccccHHHHhhhcCCCCceeEEeec
Q 017776 320 SRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 352 (366)
Q Consensus 320 klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L 352 (366)
|+||+.++...+|..++..|+++|+|++|+|+|
T Consensus 397 k~GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~~ 429 (429)
T TIGR01890 397 ERGFQTASVDELPEARRKLYNYQRNSKILMKRL 429 (429)
T ss_pred HCCCEECChhhCCHHHHHHhcccccCceeeecC
Confidence 999999999999999999999999999999986
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=4.1e-48 Score=389.19 Aligned_cols=280 Identities=47% Similarity=0.761 Sum_probs=254.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcc-cccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPI-LDESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~-~~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+.+|++|+|||++|++++++|+++|||+|++|++||.+|+|+|||||||+++ +++++++|++++.+++++++..-.
T Consensus 161 i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~~~-- 238 (441)
T PRK05279 161 IRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEALE-- 238 (441)
T ss_pred HHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhhhh--
Confidence 46799999999999999999999999999999999999999999999999995 467899999999999998875211
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
. | ..+|| |.+
T Consensus 239 ----------------------------------------------------~--~-------~~~gg---------M~~ 248 (441)
T PRK05279 239 ----------------------------------------------------D--G-------DYNSG---------TAR 248 (441)
T ss_pred ----------------------------------------------------c--C-------CCCcc---------HHH
Confidence 0 0 01222 999
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHH
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEE 239 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~ 239 (366)
||++|..+++.|++++||++++.++.++.++|+.+|.||+|..+.|+.||+++.+|++++.+++.+.....+..+++.+.
T Consensus 249 Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~ 328 (441)
T PRK05279 249 FLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRRSREQ 328 (441)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877777777778888
Q ss_pred HHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHH
Q 017776 240 LLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFK 319 (366)
Q Consensus 240 l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~ 319 (366)
+......+++++.+++++||+.+.++.....++|..++|+|+|||+|+|++||++++++++++|++.+++.++++.+||+
T Consensus 329 l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~~fY~ 408 (441)
T PRK05279 329 LEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTAHWFL 408 (441)
T ss_pred HhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHH
Confidence 88888889999999999999988866555678999999999999999999999999999999999999888888999999
Q ss_pred hCCCeEeccccccHHHHhhhcCCCCceeEEeec
Q 017776 320 SRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 352 (366)
Q Consensus 320 klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L 352 (366)
|+||+.++...+|..++..|+++|+|++|+|.|
T Consensus 409 k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 409 ERGFVPVDVDDLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred HCcCEECChhhCcHHHHHhhCcccCceeeeecC
Confidence 999999999999999999999999999999986
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=219.74 Aligned_cols=126 Identities=40% Similarity=0.653 Sum_probs=115.5
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCc--ccccCCHHHHHHHHHHhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGH--LIRFLTLQEADSLIRQRV 77 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~--~i~~l~~~~~~~l~~~~~ 77 (366)
|+.+|++|+||||+|+|++++|+.||||+|++|+++|.+|+|+|||||||++|+ +..+. +|++++.+++++++++++
T Consensus 136 i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~ 215 (265)
T COG0548 136 IERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI 215 (265)
T ss_pred HHHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC
Confidence 467999999999999999999999999999999999999999999999999954 55554 999999999999998764
Q ss_pred hhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhcccc
Q 017776 78 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 157 (366)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (366)
+ .+ | |
T Consensus 216 ----i-------------------------------------------------~~-G---------------------M 220 (265)
T COG0548 216 ----I-------------------------------------------------TG-G---------------------M 220 (265)
T ss_pred ----c-------------------------------------------------cC-c---------------------c
Confidence 1 22 3 9
Q ss_pred HHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 158 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 158 ~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
.+|+++|++||..|++++||++++.+++++.|+|++.|.|||+.
T Consensus 221 i~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 221 IPKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 99999999999999999999999999999999999999999985
No 5
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.94 E-value=1.1e-26 Score=229.00 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=167.6
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCH-HHHHHHHHHhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEADSLIRQRVK 78 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~-~~~~~l~~~~~~ 78 (366)
|+++|++|.|||++|+|.+++|++||||+|++|++||.+|+|+|||||||++|+ +.+|++|++|+. ++++.+++.+.
T Consensus 122 I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~~~l~~~~~- 200 (398)
T PRK04531 122 VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEYDHLMQQPW- 200 (398)
T ss_pred HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHHHHHHhcCC-
Confidence 467899999999999999999999999999999999999999999999999965 568999999997 56777764322
Q ss_pred hhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccH
Q 017776 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
+ ++ | |.
T Consensus 201 -------------------v---------------------------------tg-G---------------------M~ 206 (398)
T PRK04531 201 -------------------I---------------------------------NG-G---------------------MK 206 (398)
T ss_pred -------------------C---------------------------------Cc-c---------------------HH
Confidence 1 23 3 99
Q ss_pred HHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccce-EEeCcccCHHHHHHHHHHHHHcCcCccCCH
Q 017776 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEG-TRTAKVTDLSGIKQIIQPLVESGALVRRTD 237 (366)
Q Consensus 159 ~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~-iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~ 237 (366)
+||++|.+++. +++++|+++++.++.++.|+|+++|.||+|.++..+. .+.+..=|.+.+.+++...+.... .
T Consensus 207 ~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~~sf~r~~----~- 280 (398)
T PRK04531 207 LKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIESSFGRTL----K- 280 (398)
T ss_pred HHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHhhhcccch----H-
Confidence 99999999984 6788999999999999999999999999999876422 223344488888888744433221 1
Q ss_pred HHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH
Q 017776 238 EELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 300 (366)
Q Consensus 238 e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~ 300 (366)
+.+.+. ...+-++.++..-|++.+.. ++..++|+.|+|.+..||.|++..++..+.+...
T Consensus 281 ~~y~~~-~~~~~~y~~~~y~~~Aiv~~--~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~~ 340 (398)
T PRK04531 281 PDYFDT-TQLLRAYVSENYRAAAILTE--TGGGPYLDKFAVLDDARGEGLGRAVWNVMREETP 340 (398)
T ss_pred HHHhcc-CCceEEEEeCCCcEEEEEec--CCCceEeEEEEEccchhhcChHHHHHHHHHhhCC
Confidence 223232 23333333444445555542 3568999999999999999999999998887753
No 6
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.91 E-value=1.2e-24 Score=203.96 Aligned_cols=124 Identities=23% Similarity=0.283 Sum_probs=110.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCH-HHHHHHHHHhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEADSLIRQRVK 78 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~-~~~~~l~~~~~~ 78 (366)
|+.+|++|+||||+|+|++++|++||||+|++|++||.+|+|+|||||||++|+ ++++++|++|++ +++++|+++++
T Consensus 146 I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~~~li~~g~- 224 (271)
T cd04236 146 LQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADLPSLSDAEW- 224 (271)
T ss_pred HHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHHHHHHhCCE-
Confidence 467899999999999999999999999999999999999999999999999955 678999999996 89999998876
Q ss_pred hhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccH
Q 017776 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
+ ++ ||.+| .
T Consensus 225 -------------------i---------------------------------~g-Gm~~k------------------i 233 (271)
T cd04236 225 -------------------L---------------------------------SE-TEQNR------------------I 233 (271)
T ss_pred -------------------E---------------------------------cC-Ceeec------------------h
Confidence 1 33 42111 7
Q ss_pred HHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 159 ~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
+|+++|..++..|+. |+|++ +++++.|+|++.|.||+|
T Consensus 234 ~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 234 QDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 799999999999999 99998 788999999999999986
No 7
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.90 E-value=7e-24 Score=200.98 Aligned_cols=126 Identities=51% Similarity=0.774 Sum_probs=114.9
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+++|++|+|||++|+|++++|+++|+|+|++|++||.+|+|+||+||||++++ +.++++|++++.+++++++..+.
T Consensus 154 i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~~-- 231 (280)
T cd04237 154 IRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETGA-- 231 (280)
T ss_pred HHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcCC--
Confidence 467999999999999999999999999999999999999999999999999954 56899999999999999987644
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
++ ++ | |.+
T Consensus 232 -----------------~~---------------------------------~g-g---------------------M~~ 239 (280)
T cd04237 232 -----------------LL---------------------------------TN-D---------------------TAR 239 (280)
T ss_pred -----------------CC---------------------------------CC-C---------------------HHH
Confidence 00 12 2 999
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
||++|.++++.||+++||++++.+++++.|+|+++|.||++
T Consensus 240 Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 240 LLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 99999999999999999999999999999999999999986
No 8
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-23 Score=178.45 Aligned_cols=145 Identities=39% Similarity=0.738 Sum_probs=137.7
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~Rgq 285 (366)
++||.++.+|++.|.++++++..++.+.+++++.++..+..|++++++|+++||++++++...+.+++.+++|+|+|||+
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCC
Confidence 36999999999999999999999999999999999999999999999999999999998777799999999999999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEeccccccHHHHhhhcCC-CCceeEEe
Q 017776 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS-RNSKYYMK 350 (366)
Q Consensus 286 GiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~-r~s~vl~k 350 (366)
|+|..|+.+++..|++.|++++++.|+.+.+||+++||+.++.+.+|...+..|++. +.++..+.
T Consensus 81 G~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~~~~ 146 (153)
T COG1246 81 GRGERLLERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYNFCERRSKCLAF 146 (153)
T ss_pred CcHHHHHHHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 76665543
No 9
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.87 E-value=3.4e-22 Score=189.87 Aligned_cols=126 Identities=26% Similarity=0.452 Sum_probs=112.4
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccc----cCCcccccCCHHHHHHHHHHh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~----~~~~~i~~l~~~~~~~l~~~~ 76 (366)
|+.+|++|.|||++|++++.+|+.+|+|+|++|+++|.+|+|+||+||||++++. +++++|++++.+++++++..+
T Consensus 154 i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g 233 (284)
T CHL00202 154 IDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTG 233 (284)
T ss_pred HHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999999999999999999653 347899999999988887432
Q ss_pred hhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccc
Q 017776 77 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (366)
. .+| |
T Consensus 234 ~-----------------------------------------------------~tG-G--------------------- 238 (284)
T CHL00202 234 I-----------------------------------------------------ISG-G--------------------- 238 (284)
T ss_pred C-----------------------------------------------------CCC-C---------------------
Confidence 1 022 3
Q ss_pred cHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 157 ~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
|.+||++|..+++.|++++||++++.+++++.|+|+.++.||+|.
T Consensus 239 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 239 MIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 999999999999999999999999999999999999999999984
No 10
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-23 Score=205.27 Aligned_cols=284 Identities=41% Similarity=0.517 Sum_probs=225.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCc-ccccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~-~~~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+++++.|.+|++++++.+.+|+++|||+|++|.++|.+|+|+|+++|+|++ +++++|+.++.++.++...++++..+|
T Consensus 229 i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~~l~k~~qq 308 (520)
T KOG2436|consen 229 IRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDAGLRKPSQQ 308 (520)
T ss_pred hhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHhhhhhhhhh
Confidence 6789999999999999999999999999999999999999999999999954 889999999999999999999988888
Q ss_pred hHHHHhHHhhhhccccccccCCCC-CCccccCC--CCCccchh-hhhhccCCCccCCCCCCcccccccccccchhhhhcc
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDS-IGSVYSSQ--NGKTFSER-RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 155 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (366)
..+|+..++++.+...+=++..-+ ++.+-+-+ ..+.+.|- .+.++.++.+++.++++|+..+++..++-+++.|+|
T Consensus 309 ~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~~~~~~rln 388 (520)
T KOG2436|consen 309 KNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGGVGINKGNSLISQSFKRALDLEEYIDRLN 388 (520)
T ss_pred cccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCccccCceeeecCcccccchhhhhcchHHHHHHhh
Confidence 889999999988766443433222 11111111 11122222 788999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccceEEeCcccCHHHHHHHHHHHHHc-CcCcc
Q 017776 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVES-GALVR 234 (366)
Q Consensus 156 ~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~iR~a~~~Di~~i~~L~~~~~~~-~~~~~ 234 (366)
+.+.++-+|..-|..++.+++..|++..+.++.+.|.+.+.+||. .+.+-.++.+..+|+|+|....++.... .|...
T Consensus 389 ~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~~~~~w~f~ 467 (520)
T KOG2436|consen 389 GSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLNEVNKWYFR 467 (520)
T ss_pred chHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeecccccccceEEEe
Confidence 999999999999999999999999999998899999999999998 4444556666777888776666554333 23344
Q ss_pred CCHHHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHH
Q 017776 235 RTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKL 291 (366)
Q Consensus 235 ~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~L 291 (366)
++...+. ..+.+++.+.++++..|+.+.++. ++..+.|.++.|+++-+.++
T Consensus 468 rs~g~L~-~~~~~lfwyg~~~i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~ 518 (520)
T KOG2436|consen 468 RSEGSLR-ALDFKLFWYGEGQIIKCAALFQFF-----EVAAMSVASDIRPSWQNDKL 518 (520)
T ss_pred ccHHHHh-ccCcEEEEecCcHHHHHHHhhhhh-----HHHHhhhccccCccccCCCC
Confidence 4444443 445566666778888888888653 56677888888887765543
No 11
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.86 E-value=2.5e-21 Score=180.60 Aligned_cols=122 Identities=26% Similarity=0.343 Sum_probs=102.6
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHH-HHHHHHHHhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQ-EADSLIRQRVK 78 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~-~~~~l~~~~~~ 78 (366)
|+++|++|+|||++|++++++|+++|+|+|++|+++|.+|+|+|||||||++++ +.++++|++++.. ++++++..+.
T Consensus 123 i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~~- 201 (248)
T cd04252 123 IEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQPW- 201 (248)
T ss_pred HHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcCC-
Confidence 467899999999999999999999999999999999999999999999999954 5679999999974 6777774332
Q ss_pred hhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccH
Q 017776 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
+ +| | |.
T Consensus 202 -------------------v---------------------------------tg-G---------------------M~ 207 (248)
T cd04252 202 -------------------V---------------------------------KY-G---------------------TK 207 (248)
T ss_pred -------------------c---------------------------------CC-c---------------------hH
Confidence 1 33 3 89
Q ss_pred HHHHHHHHHHHc--CCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 159 SELAAAAFVCRR--GVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 159 ~~l~~A~~al~~--Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
+||++|..+.+. ++..++|.+ +++++.|+|+++|.||+|
T Consensus 208 ~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 208 LKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred HHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence 999987776665 555566665 688999999999999986
No 12
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.84 E-value=1.4e-20 Score=179.08 Aligned_cols=128 Identities=40% Similarity=0.638 Sum_probs=114.0
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+.+|++|.|||++|++++++|+++|+|+|++|+.+|.+|+|++|+|+||++++ +.++++|++++.+|+++++..+.
T Consensus 155 l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~-- 232 (283)
T PRK00942 155 LEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIEDGV-- 232 (283)
T ss_pred HHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHHcCC--
Confidence 457899999999999999999999999999999999999999999999999955 55799999999999888864321
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
+ +| | |.+
T Consensus 233 ------------------~---------------------------------tg-g---------------------m~~ 239 (283)
T PRK00942 233 ------------------I---------------------------------TG-G---------------------MIP 239 (283)
T ss_pred ------------------C---------------------------------CC-c---------------------hHH
Confidence 0 22 3 999
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
|+++|..+++.|+.+++|+++..++.++.++|++++.||+|.++
T Consensus 240 Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 240 KVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999999999999999999999999899999999999999753
No 13
>PLN02512 acetylglutamate kinase
Probab=99.82 E-value=3.7e-20 Score=177.84 Aligned_cols=126 Identities=28% Similarity=0.487 Sum_probs=112.0
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccc----cCCcccccCCHHHHHHHHHHh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~----~~~~~i~~l~~~~~~~l~~~~ 76 (366)
|+++|+.|.|||++|++++++|+.+|+|+|++|+.+|.+|+|++|+|+||++++. +++++|++++.+++++++..+
T Consensus 179 i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~ 258 (309)
T PLN02512 179 LRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADG 258 (309)
T ss_pred HHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCC
Confidence 4678999999999999999999999999999999999999999999999999552 468999999999988887432
Q ss_pred hhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccc
Q 017776 77 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (366)
. + +| |
T Consensus 259 ~----v-------------------------------------------------tG-G--------------------- 263 (309)
T PLN02512 259 K----I-------------------------------------------------AG-G--------------------- 263 (309)
T ss_pred C----C-------------------------------------------------CC-c---------------------
Confidence 2 0 22 3
Q ss_pred cHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 157 ~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
|.+||++|..+++.|+++++|+++..++.++.++|+..+.||+|.
T Consensus 264 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 264 MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 999999999999999999999999999998899999999999985
No 14
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.82 E-value=7.5e-20 Score=173.64 Aligned_cols=125 Identities=34% Similarity=0.590 Sum_probs=111.0
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-cc---CCcccccCCHHHHHHHHHHh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DE---SGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~---~~~~i~~l~~~~~~~l~~~~ 76 (366)
|+++|+.|.|||+++++++++|+.+|+|+|.+|+.+|.+|+|++|+|+||++++ +. ++++|++++.+++++++..+
T Consensus 151 i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~ 230 (279)
T cd04250 151 LETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADG 230 (279)
T ss_pred HHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcC
Confidence 457899999999999999999999999999999999999999999999999965 33 48999999999988876432
Q ss_pred hhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccc
Q 017776 77 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (366)
. + .| |
T Consensus 231 ~--------------------~---------------------------------tG-g--------------------- 235 (279)
T cd04250 231 I--------------------I---------------------------------SG-G--------------------- 235 (279)
T ss_pred C--------------------C---------------------------------CC-c---------------------
Confidence 1 0 22 2
Q ss_pred cHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 157 ~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|.+|+++|..+++.|+.+|+|+++..+++++.++|+.++.||+|
T Consensus 236 m~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 236 MIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999986
No 15
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.81 E-value=1.4e-19 Score=169.74 Aligned_cols=125 Identities=38% Similarity=0.617 Sum_probs=110.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+.+|++|.|||++|++++++|+++|+|+|++|+.+|.+|+|++|+|+||++++ +.++++|++++.+++++++..+.
T Consensus 131 l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~-- 208 (256)
T cd04238 131 LETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDGV-- 208 (256)
T ss_pred HHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcCC--
Confidence 457899999999999999999999999999999999999999999999999955 45699999999988888764221
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
+ +| | |.+
T Consensus 209 ------------------~---------------------------------~g-g---------------------m~~ 215 (256)
T cd04238 209 ------------------I---------------------------------SG-G---------------------MIP 215 (256)
T ss_pred ------------------C---------------------------------CC-C---------------------hHH
Confidence 0 22 2 999
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|+++|..+++.|+.+++|+++..++.++.++|...+.||+|
T Consensus 216 Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 216 KVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999878899986
No 16
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.79 E-value=5.1e-19 Score=165.56 Aligned_cols=123 Identities=27% Similarity=0.365 Sum_probs=108.2
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHHHHHHHHhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~~~l~~~~~~~ 79 (366)
|+.+|++|.|||++|+|++++|+++|+|+|++|+.+|.+|+|+ +||+||++++ +.++++|++++..++++++..+.
T Consensus 129 l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~-- 205 (252)
T cd04249 129 LNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV-- 205 (252)
T ss_pred HHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC--
Confidence 4578999999999999999999999999999999999999999 8999999955 56789999999999888875322
Q ss_pred hHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHH
Q 017776 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
+ ++ | |.+
T Consensus 206 ------------------~---------------------------------~g-G---------------------m~~ 212 (252)
T cd04249 206 ------------------I---------------------------------TD-G---------------------MIV 212 (252)
T ss_pred ------------------C---------------------------------cC-C---------------------cHH
Confidence 0 22 3 899
Q ss_pred HHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|+++|..++..|+.+++|+++..++. +.++|++++.||+|
T Consensus 213 kl~~a~~~~~~~~~~v~I~~g~~~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 213 KVNAALDAAQSLRRGIDIASWQYPEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccH-HHHHHcCCCCCcCC
Confidence 99999999999998999999998885 77899999999986
No 17
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.79 E-value=6e-19 Score=165.48 Aligned_cols=120 Identities=33% Similarity=0.454 Sum_probs=103.9
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccccCCcccccCCHHHHHHHHHHhhhhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQS 80 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~ 80 (366)
|+.+|++|.|||++|++++++|+.+|+|+|++|+.+|.+|+|++|+|+||++++..++++|++++.+++++++.. .
T Consensus 138 i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~-~--- 213 (257)
T cd04251 138 IEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK-A--- 213 (257)
T ss_pred HHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh-C---
Confidence 467899999999999999999999999999999999999999999999999977667999999999998888621 1
Q ss_pred HHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccccHHH
Q 017776 81 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 160 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
+| | |.+|
T Consensus 214 ---------------------------------------------------~g-g---------------------m~~K 220 (257)
T cd04251 214 ---------------------------------------------------GG-G---------------------MKRK 220 (257)
T ss_pred ---------------------------------------------------CC-c---------------------hHHH
Confidence 23 3 9999
Q ss_pred HHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 161 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 161 l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|++|..+++.|+.++||++++.++.+.. ++ .|.||.|
T Consensus 221 l~aa~~a~~~gv~~v~i~~g~~~~~l~~-~l--~g~gT~i 257 (257)
T cd04251 221 LLAAAEAVEGGVREVVIGDARADSPISS-AL--NGGGTVI 257 (257)
T ss_pred HHHHHHHHHcCCCEEEEecCCCccHHHH-HH--cCCCcCC
Confidence 9999999999999999999999987543 33 2567754
No 18
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.79 E-value=6.9e-19 Score=166.06 Aligned_cols=122 Identities=30% Similarity=0.415 Sum_probs=106.1
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccc----cCCcccccCCHHHHHHHHHHh
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~----~~~~~i~~l~~~~~~~l~~~~ 76 (366)
|+++|++|.|||++|++++.+|+.+|+|+|.+|+.+|.+|+|++|+|+||++++. +++++|++++.+++++++..
T Consensus 142 i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~- 220 (268)
T PRK14058 142 LKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA- 220 (268)
T ss_pred HHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc-
Confidence 4678999999999999999999999999999999999999999999999999653 34889999998888777521
Q ss_pred hhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhccc
Q 017776 77 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (366)
. +| |
T Consensus 221 ~------------------------------------------------------tG-g--------------------- 224 (268)
T PRK14058 221 A------------------------------------------------------GG-G--------------------- 224 (268)
T ss_pred c------------------------------------------------------CC-c---------------------
Confidence 1 22 3
Q ss_pred cHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccccc
Q 017776 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 157 ~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~ 202 (366)
|.+||++|..+++.|+.+++|++++.++.++.++ .|.||+|.+
T Consensus 225 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 225 MKKKVLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 9999999999999999999999999999877766 567999864
No 19
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.76 E-value=1.8e-18 Score=165.43 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=101.1
Q ss_pred CcccccCCceEEEc-----CcccCCCCCeee----cCHHHHHHHHHHHcCCCEEEEEecCccc-----ccCCcccccCCH
Q 017776 1 MRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDGPIL-----DESGHLIRFLTL 66 (366)
Q Consensus 1 i~~ll~~g~ipvi~-----~~g~~~~g~~~n----in~D~~A~~~A~al~a~kLi~ltd~~~~-----~~~~~~i~~l~~ 66 (366)
|++||++|+|||++ |++.+.+|+++| ||+|.+|+++|.+|+|||||||||++++ ++++++|++++.
T Consensus 179 I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~~~~~li~~lt~ 258 (316)
T PRK12352 179 IKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDI 258 (316)
T ss_pred HHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCcccccccCH
Confidence 56899999998888 999988877666 9999999999999999999999999954 235789999999
Q ss_pred HHHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccc
Q 017776 67 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 146 (366)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (366)
.+++++++++. |..|
T Consensus 259 ~e~~~li~~g~-----------------------------------------------------------------i~~G 273 (316)
T PRK12352 259 ATMTRYMQEGH-----------------------------------------------------------------FPPG 273 (316)
T ss_pred HHHHHHHhcCC-----------------------------------------------------------------cCCC
Confidence 99999986543 1112
Q ss_pred cchhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 147 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 147 ~~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
| |.+||++|.+++..|+.++||++ +.. +.++++.. .||.|.
T Consensus 274 g---------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~ 314 (316)
T PRK12352 274 S---------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHII 314 (316)
T ss_pred C---------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEE
Confidence 2 99999999999999999999996 443 55667665 778874
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.72 E-value=1.9e-17 Score=154.93 Aligned_cols=128 Identities=18% Similarity=0.295 Sum_probs=104.7
Q ss_pred CcccccCCceEEEcC-cccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-cc---CCcccccCCHHHHHHHHHH
Q 017776 1 MRERLDGGCLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DE---SGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 1 i~~ll~~g~ipvi~~-~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~---~~~~i~~l~~~~~~~l~~~ 75 (366)
|+++|+.|.|||+++ .+.+++|+++|+|+|++|+.+|.+|+|++|+|+||++++ +. ++++|++++.+++++++..
T Consensus 120 l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~ 199 (252)
T cd04241 120 IKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAA 199 (252)
T ss_pred HHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHh
Confidence 457899999999987 467889999999999999999999999999999999965 43 6999999999888887643
Q ss_pred hhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhcc
Q 017776 76 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 155 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (366)
.. .+ ....+||
T Consensus 200 ~~------------------------------------------------------~~-------~~~~tGG-------- 210 (252)
T cd04241 200 LG------------------------------------------------------SA-------GTDVTGG-------- 210 (252)
T ss_pred cC------------------------------------------------------cC-------CccccCC--------
Confidence 11 00 0012233
Q ss_pred ccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 156 ~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|.+||++|..+++.|++ ++|+++..++. +.+++.....||.|
T Consensus 211 -m~~Kl~aa~~a~~~Gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 211 -MAGKIEELLELARRGIE-VYIFNGDKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred -HHHHHHHHHHHHhcCCe-EEEEeCCCHHH-HHHHHcCCCCceEC
Confidence 99999999999999998 99999999876 56677777788875
No 21
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.71 E-value=3e-17 Score=151.69 Aligned_cols=75 Identities=32% Similarity=0.483 Sum_probs=67.4
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccC-CcccccCCHHHHHHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DES-GHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~-~~~i~~l~~~~~~~l~~~ 75 (366)
|+++|++|.|||++|+|++.+|+++|+|+|.+|+.||.+|+|++|+|+||++++ +.+ +++|++|+.+++++++..
T Consensus 128 i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~~ 204 (231)
T TIGR00761 128 LEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIEQ 204 (231)
T ss_pred HHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999999955 444 459999999999888743
No 22
>PRK07757 acetyltransferase; Provisional
Probab=99.70 E-value=9.2e-16 Score=131.76 Aligned_cols=129 Identities=33% Similarity=0.614 Sum_probs=111.4
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~Rgq 285 (366)
+.||+++++|++.+.+++..........+.+.+.+...+..++++..+++++|++.+.... .+..+|..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~~-~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHILW-EDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEecc-CCceEEEEEEECHHHcCC
Confidence 5799999999999999998877666666667778877888888999999999999998543 356789999999999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEeccccccHHHH
Q 017776 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERR 336 (366)
Q Consensus 286 GiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~~lp~~~~ 336 (366)
|+|++|++.+++.+++.|+..+.+.+ .+.+||+|+||+..+...+|...+
T Consensus 81 Glg~~Ll~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~ 130 (152)
T PRK07757 81 GIGRMLVEACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVW 130 (152)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHH
Confidence 99999999999999999999987666 457999999999999988886544
No 23
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.67 E-value=6.8e-16 Score=130.90 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=98.0
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----CcEEEEEECCEEEEEEEEeeecC----CCeEEEEEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAI 276 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~v~~~dg~iVG~~~l~~~~~----~~~~~L~~l 276 (366)
.+.||+++.+|++.+.+++.......+......+.+...+ ..++++..++++||++.+..... ...++|..+
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheehee
Confidence 4679999999999999998876543332222223333322 35778888999999999874321 124679999
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 277 ~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
+|+|+|||+|+|+.|+.++++.|++.|+..+.+.+ ..|++||+++||+..+..
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~ 139 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFR 139 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhhh
Confidence 99999999999999999999999999999999988 489999999999987543
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.63 E-value=8.6e-15 Score=128.88 Aligned_cols=126 Identities=28% Similarity=0.564 Sum_probs=102.2
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEE-ECCEEEEEEEEeeecCCCeEEEEEEEEccCCc
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~-~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~R 283 (366)
.+.+|+++++|.+.+.++++...............+..+...++++. .+++++|++.+.... ...++|..++|+|+||
T Consensus 5 ~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~r 83 (169)
T PRK07922 5 AITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAAR 83 (169)
T ss_pred CceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHHh
Confidence 46899999999999999998766544333333444445566788887 899999999887543 3568899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEecccccc
Q 017776 284 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIP 332 (366)
Q Consensus 284 gqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~~lp 332 (366)
|+|+|++|++++++++++.|++.+++.+ .+.+||+|+||+..+....+
T Consensus 84 gkGiG~~Ll~~~~~~a~~~g~~~l~~~~-~~~~fY~k~GF~~~~~~~~~ 131 (169)
T PRK07922 84 GRGVGHAIVERLLDVARELGLSRVFVLT-FEVEFFARHGFVEIDGTPVT 131 (169)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEe-ccHHHHHHCCCEECccccCC
Confidence 9999999999999999999999998877 35799999999998755433
No 25
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.63 E-value=9.3e-16 Score=143.44 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=102.2
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCC--HHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLT--LQEADS 71 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~--~~~~~~ 71 (366)
|+++|+.|+|||+++.+...++++.++|+|.+|+.+|.+|+||+|+|+|||+|+ + +++++|++++ .+++..
T Consensus 116 i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~ 195 (251)
T cd04242 116 LETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEA 195 (251)
T ss_pred HHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHH
Confidence 457899999999998777667778899999999999999999999999999965 2 2589999999 777666
Q ss_pred HHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhh
Q 017776 72 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 151 (366)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
+..... ..+.+||
T Consensus 196 ~~~~~~---------------------------------------------------------------~~~~tgg---- 208 (251)
T cd04242 196 MAGGSG---------------------------------------------------------------SSVGTGG---- 208 (251)
T ss_pred HhcccC---------------------------------------------------------------cCcccCC----
Confidence 531100 0123344
Q ss_pred hhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 152 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 152 ~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|.+|+++|..+.+.|++ ++|+++..++. +.+++...+.||+|
T Consensus 209 -----m~~Kl~a~~~a~~~gi~-v~I~~g~~~~~-i~~~l~g~~~GT~i 250 (251)
T cd04242 209 -----MRTKLKAARIATEAGIP-VVIANGRKPDV-LLDILAGEAVGTLF 250 (251)
T ss_pred -----cHHHHHHHHHHHHCCCc-EEEEcCCCCCH-HHHHHcCCCCCeEe
Confidence 99999999999999998 99999998875 66677777889987
No 26
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.61 E-value=1.6e-15 Score=141.15 Aligned_cols=118 Identities=29% Similarity=0.394 Sum_probs=102.6
Q ss_pred CcccccCCceEEEcCcccCC---CCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-cc------CCcccccCCHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSS---SGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DE------SGHLIRFLTLQEAD 70 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~---~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~------~~~~i~~l~~~~~~ 70 (366)
|+.+|+.|.|||+++.+... .+++.|+++|.+|+.+|.+|+|++|+|+|||+++ +. ++++|++|+.+|++
T Consensus 121 l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~ 200 (248)
T cd02115 121 LKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAA 200 (248)
T ss_pred HHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHH
Confidence 35688999999999999887 8999999999999999999999999999999955 32 38999999999988
Q ss_pred HHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchh
Q 017776 71 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 150 (366)
Q Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (366)
++...|.
T Consensus 201 ~l~~~g~------------------------------------------------------------------------- 207 (248)
T cd02115 201 ELAYAGA------------------------------------------------------------------------- 207 (248)
T ss_pred HHHHcCC-------------------------------------------------------------------------
Confidence 8763321
Q ss_pred hhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 151 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 151 ~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|..|++++..+.+.|+ +++|+++..++.+ ++|+..+.||+|
T Consensus 208 ------~~~k~~a~~~~~~~~~-~v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 208 ------MVLKPKAADPAARAGI-PVRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred ------CccCHHHHHHHHHcCC-cEEEEeCCCcccc--cccCCCCCCCCC
Confidence 6678889999999995 5999999999886 899999999986
No 27
>PTZ00330 acetyltransferase; Provisional
Probab=99.61 E-value=1.5e-14 Score=122.98 Aligned_cols=124 Identities=24% Similarity=0.357 Sum_probs=93.8
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhc-----c-CcEEEEEECCEEEEEEEEeeec-----CCCeEEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA-----L-DSFYVVEREGQIIACAALFPFF-----KEKCGEV 273 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~-----~-~~~~v~~~dg~iVG~~~l~~~~-----~~~~~~L 273 (366)
.++||+++++|++.+.++++...............+... . ..+++...+|++||++.+...+ ....++|
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i 85 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHI 85 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEE
Confidence 368999999999999999876543222111112222221 1 1345556789999999886422 1135789
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEecc
Q 017776 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 274 ~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~ 328 (366)
..++|+|+|||+|+|++|++++++++++.++..+.+.+ ..+.+||+|+||+..+.
T Consensus 86 ~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 86 EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEece
Confidence 99999999999999999999999999999999888877 58999999999998764
No 28
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.61 E-value=2.9e-15 Score=142.47 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=98.5
Q ss_pred CcccccCCceEEEcCcc----cCCCCCeeec----CHHHHHHHHHHHcCCCEEEEEecCccc-----ccCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLG----YSSSGEVLNC----NTYEVATACALAIEADKLICIIDGPIL-----DESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g----~~~~g~~~ni----n~D~~A~~~A~al~a~kLi~ltd~~~~-----~~~~~~i~~l~~~ 67 (366)
|++||++|.|||+++.| ++.+|+++|+ |+|.+|+.+|.+|+||+||||||++++ ++++++|++++.+
T Consensus 178 I~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p~~~~i~~It~~ 257 (313)
T PRK12454 178 IKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVE 257 (313)
T ss_pred HHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCCCCeEccccCHH
Confidence 56899999999999665 7788999995 679999999999999999999999954 3568999999999
Q ss_pred HHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccccc
Q 017776 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
++++++.++. |.+|+
T Consensus 258 e~~~~i~~g~-----------------------------------------------------------------~~~Gg 272 (313)
T PRK12454 258 EAKKYYEEGH-----------------------------------------------------------------FKAGS 272 (313)
T ss_pred HHHHHHhcCC-----------------------------------------------------------------cCCCC
Confidence 9999885432 22333
Q ss_pred chhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
|.+|+++|.+++..|+.+++|.+. .. +.+++... .||.|.
T Consensus 273 ---------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 273 ---------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRII 312 (313)
T ss_pred ---------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeC
Confidence 999999999999999999999853 22 44455443 688874
No 29
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.60 E-value=4.2e-15 Score=141.09 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=97.8
Q ss_pred CcccccCCceEEEcCcccCC-------CCCeee--cCHHHHHHHHHHHcCCCEEEEEecCccc-c-----cCCcccccCC
Q 017776 1 MRERLDGGCLVILSNLGYSS-------SGEVLN--CNTYEVATACALAIEADKLICIIDGPIL-D-----ESGHLIRFLT 65 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~-------~g~~~n--in~D~~A~~~A~al~a~kLi~ltd~~~~-~-----~~~~~i~~l~ 65 (366)
|+.||+.|+||||++++... +|+.+| +|+|++|+.||.+|+||+|||||||+++ + +++++|++++
T Consensus 143 l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~ 222 (284)
T cd04256 143 LEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFY 222 (284)
T ss_pred HHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEccccc
Confidence 46789999999999755533 355666 9999999999999999999999999965 2 3588999999
Q ss_pred HHHHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccc
Q 017776 66 LQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAI 145 (366)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (366)
..+...+... . .+ .+.+
T Consensus 223 ~~~~~~~~~~-~-------------------------------------------------~s-------------~~gt 239 (284)
T cd04256 223 PGDQQSITFG-T-------------------------------------------------KS-------------RVGT 239 (284)
T ss_pred HhHHHHhhcc-c-------------------------------------------------cc-------------Cccc
Confidence 7664433210 0 00 1223
Q ss_pred ccchhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 146 GGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|| |.+||++|..+.+.|++ ++|+++..++. +.+++.....||.|
T Consensus 240 GG---------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~ 283 (284)
T cd04256 240 GG---------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFF 283 (284)
T ss_pred CC---------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEe
Confidence 34 99999999999999998 89999999987 56677777889987
No 30
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.59 E-value=3.6e-15 Score=141.51 Aligned_cols=132 Identities=20% Similarity=0.288 Sum_probs=104.3
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-------ccCCcccccCCHHHHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-------~~~~~~i~~l~~~~~~~l~ 73 (366)
|..||+.|.||||++++...+-|+.+.|+|.+|+.+|...+||.||+|||++++ +++.+.|++++...-+-..
T Consensus 123 l~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~ 202 (369)
T COG0263 123 LSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEA 202 (369)
T ss_pred HHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHH
Confidence 457999999999999999999999999999999999999999999999999977 2456777766533211111
Q ss_pred HHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhh
Q 017776 74 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 153 (366)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
..+ +.++. +.+||
T Consensus 203 ~ag------------------------------------------------gsgs~-------------~GTGG------ 215 (369)
T COG0263 203 MAG------------------------------------------------GSGSE-------------LGTGG------ 215 (369)
T ss_pred Hhc------------------------------------------------CCCCC-------------CCccc------
Confidence 111 12222 33444
Q ss_pred ccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCc
Q 017776 154 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 204 (366)
Q Consensus 154 ~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~ 204 (366)
|.+||.+|..|+.+|++ +.|.+|..++. +..+......||.|.+..
T Consensus 216 ---M~TKl~AA~iA~~aG~~-~iI~~g~~~~~-i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 216 ---MRTKLEAAKIATRAGVP-VIIASGSKPDV-ILDALEGEAVGTLFEPQA 261 (369)
T ss_pred ---HHHHHHHHHHHHHcCCc-EEEecCCCcch-HHHHHhCCCCccEEecCC
Confidence 99999999999999999 99999999985 556777888999997543
No 31
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.58 E-value=7.9e-15 Score=140.26 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=94.6
Q ss_pred CcccccCCceEEEcCcccCCC----CCe----eecCHHHHHHHHHHHcCCCEEEEEecCccc-----ccCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLGYSSS----GEV----LNCNTYEVATACALAIEADKLICIIDGPIL-----DESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~----g~~----~nin~D~~A~~~A~al~a~kLi~ltd~~~~-----~~~~~~i~~l~~~ 67 (366)
|++||++|.|+|.++.|.+|. |++ +|+|+|++|+.+|.+|+||+||||||++++ +++++++++++.+
T Consensus 175 I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~~~p~a~~i~~it~~ 254 (310)
T TIGR00746 175 IKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINYGKPDEKALREVTVE 254 (310)
T ss_pred HHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCCCCCCCcCCcCcCHH
Confidence 467999998666665555443 444 499999999999999999999999999955 3568999999999
Q ss_pred HHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccccc
Q 017776 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
+++.++.++. |.+||
T Consensus 255 e~~~~~~~g~-----------------------------------------------------------------~~tGg 269 (310)
T TIGR00746 255 ELEDYYKAGH-----------------------------------------------------------------FAAGS 269 (310)
T ss_pred HHHHHHhcCC-----------------------------------------------------------------cCCCC
Confidence 8888764321 23333
Q ss_pred chhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
|.+|+++|..++..|+.+++|.+ ++ .+.+++... .||.|.
T Consensus 270 ---------M~~Kl~AA~~~~~~g~~~v~I~~---~~-~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 270 ---------MGPKVEAAIEFVESGGKRAIITS---LE-NAVEALEGK-AGTRVT 309 (310)
T ss_pred ---------cHHHHHHHHHHHHhCCCeEEEec---hH-HHHHHHCCC-CCcEEe
Confidence 99999999999999988999987 33 355666666 799874
No 32
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.58 E-value=3.4e-14 Score=148.72 Aligned_cols=129 Identities=29% Similarity=0.582 Sum_probs=111.3
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~Rgq 285 (366)
++||+++++|++.+.+++..+.......++..+.+......+++++.++++|||+.+... +....+|..++|+|+||||
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCC
Confidence 679999999999999999877655555566777777777788999999999999998754 3356899999999999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEeccccccHHHH
Q 017776 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERR 336 (366)
Q Consensus 286 GiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~~lp~~~~ 336 (366)
|+|++||+++++++++.|++.+++.+ .+..||+|+||+.++...+|....
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~ 592 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVL 592 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHH
Confidence 99999999999999999999998876 467999999999999988885433
No 33
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.57 E-value=6.2e-15 Score=145.14 Aligned_cols=129 Identities=25% Similarity=0.340 Sum_probs=103.7
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCH--HHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTL--QEADS 71 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~--~~~~~ 71 (366)
|+.||+.|.|||+++.+...+.++.++|+|.+|+.||.+|+||+|+|||||+++ + +++++|++++. ++++.
T Consensus 125 i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~ 204 (372)
T PRK05429 125 LRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEA 204 (372)
T ss_pred HHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHH
Confidence 356889999999998887777778899999999999999999999999999965 2 35789999986 45555
Q ss_pred HHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhh
Q 017776 72 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 151 (366)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
++.... .++.+||
T Consensus 205 ~~~~~~---------------------------------------------------------------~~~gtGG---- 217 (372)
T PRK05429 205 MAGGAG---------------------------------------------------------------SGLGTGG---- 217 (372)
T ss_pred HhcCCC---------------------------------------------------------------CCcCcCC----
Confidence 542100 0123344
Q ss_pred hhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 152 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 152 ~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
|.+||++|..+.+.|++ ++|+++..++. +.+++...+.||.|.+.
T Consensus 218 -----M~~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 218 -----MATKLEAARIATRAGIP-VVIASGREPDV-LLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred -----cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHhcCCCCCEEEeeC
Confidence 99999999999999998 99999999875 66777777889999754
No 34
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.56 E-value=1.2e-14 Score=136.31 Aligned_cols=128 Identities=18% Similarity=0.220 Sum_probs=98.6
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-cc------CCcc---cccCCHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DE------SGHL---IRFLTLQEAD 70 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~------~~~~---i~~l~~~~~~ 70 (366)
|+.||+.|.|||+++++..+..|++|.|+|.+|+.||.+++||.||||||++|+ +. ++++ +++++.++..
T Consensus 121 l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~ 200 (264)
T PTZ00489 121 IEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLV 200 (264)
T ss_pred HHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHH
Confidence 357999999999999999999999999999999999999999999999999965 22 2344 6677766542
Q ss_pred HHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchh
Q 017776 71 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 150 (366)
Q Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (366)
.. .+. + ..+.+||
T Consensus 201 ~~--~~~-------------------------------------------------------~-------~~~~tGG--- 213 (264)
T PTZ00489 201 AE--ATP-------------------------------------------------------N-------NRFATGG--- 213 (264)
T ss_pred Hh--cCc-------------------------------------------------------C-------CCcccCC---
Confidence 21 110 0 0123444
Q ss_pred hhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcC--CCccccccC
Q 017776 151 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVASD 203 (366)
Q Consensus 151 ~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~--g~gTmi~~d 203 (366)
|.+||.+|..+.+.|++ +.|+++..++.+ ..++... ..||.|.+.
T Consensus 214 ------M~~Kl~aa~~a~~~Gi~-v~I~~g~~~~~i-~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 214 ------IVTKLQAAQFLLERGGK-MYLSSGFHLEKA-RDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred ------hHHHHHHHHHHHHCCCC-EEEEeCCCchHH-HHHHcCCCCCCceEEeec
Confidence 99999999999999997 999999999874 4455443 379998653
No 35
>PRK09411 carbamate kinase; Reviewed
Probab=99.56 E-value=1.5e-14 Score=136.18 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=64.2
Q ss_pred CcccccCCceEEEc-----CcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c----cCCcccccCCHHHHH
Q 017776 1 MRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 1 i~~ll~~g~ipvi~-----~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~----~~~~~i~~l~~~~~~ 70 (366)
|+.||++|+|||++ |++.+.+|..+|||+|.+|+.||.+|+||+||||||++++ + +++++|++++.++++
T Consensus 169 I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~~p~~~~I~~it~~e~~ 248 (297)
T PRK09411 169 IELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELA 248 (297)
T ss_pred HHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCCcCCCCcCHHHHH
Confidence 57899999999998 7777767999999999999999999999999999999954 2 457899999999987
Q ss_pred HHH
Q 017776 71 SLI 73 (366)
Q Consensus 71 ~l~ 73 (366)
+++
T Consensus 249 ~~~ 251 (297)
T PRK09411 249 PFA 251 (297)
T ss_pred Hhc
Confidence 664
No 36
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.56 E-value=1.1e-13 Score=130.46 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=100.1
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHHcCcCccC-CHHHHHhc---cCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEc
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKA---LDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 279 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~-~~e~l~~~---~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~ 279 (366)
..+.||+++++|++.+.+++...+... ..++ ..+.+... ...+++++.++++||++.+........++|..++|+
T Consensus 114 ~~~~IR~a~~~D~~~l~~L~~~v~~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~ 192 (266)
T TIGR03827 114 EGFTLRIATEDDADAMAALYRKVFPTY-PFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATL 192 (266)
T ss_pred CceEEEECCHHHHHHHHHHHHHHhccC-CCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEEC
Confidence 346899999999999999998865432 2222 22333322 235778888999999998754444567899999999
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 280 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 280 p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
|+|||+|+|++||++++++++++|++.+++.+ ..+..+|+|+||+..+..
T Consensus 193 P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l 246 (266)
T TIGR03827 193 PEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTL 246 (266)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEE
Confidence 99999999999999999999999999998877 477899999999998864
No 37
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.54 E-value=5.8e-14 Score=116.66 Aligned_cols=119 Identities=21% Similarity=0.366 Sum_probs=90.7
Q ss_pred eEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHh--ccCcEEEEEECCEEEEEEEEeeec----C--CCeEEEEEEEE
Q 017776 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK--ALDSFYVVEREGQIIACAALFPFF----K--EKCGEVAAIGV 278 (366)
Q Consensus 207 ~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~--~~~~~~v~~~dg~iVG~~~l~~~~----~--~~~~~L~~l~V 278 (366)
+||+++++|++++.+|++..+.......+....... ....++++++++++||++.+.+.. + -..+.+..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 489999999999999998887665543311111111 235788899999999999998741 1 14689999999
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEe
Q 017776 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 326 (366)
Q Consensus 279 ~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~ 326 (366)
+|+|||+|+|++|++++++.+++.|+..+++.. ....||+|+||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 999999999999999999999999999888766 55899999999864
No 38
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.54 E-value=2e-14 Score=140.76 Aligned_cols=129 Identities=21% Similarity=0.296 Sum_probs=101.2
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCH--HHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTL--QEADS 71 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~--~~~~~ 71 (366)
|++||+.|.||||++.+...+.++...|+|++|+.+|.+|+||.|+|||||+|+ + +++++|++++. +++..
T Consensus 121 l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~ 200 (368)
T PRK13402 121 INVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYA 200 (368)
T ss_pred HHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHH
Confidence 357899999999999777777788888999999999999999999999999965 2 25889999975 33333
Q ss_pred HHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhh
Q 017776 72 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 151 (366)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
+. +. .+++ +.+||
T Consensus 201 l~--~~------------------------------------------------~~s~-------------~gtGG---- 213 (368)
T PRK13402 201 MA--GG------------------------------------------------AGSN-------------VGTGG---- 213 (368)
T ss_pred Hh--cc------------------------------------------------cccC-------------cCcCC----
Confidence 21 10 0111 23344
Q ss_pred hhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 152 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 152 ~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
|.+||++|..|...|++ ++|+++..++. +..++.....||.|.+.
T Consensus 214 -----M~~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 214 -----MRTKIQAAKIAMSHGIE-TFIGNGFTADI-FNQLLKGQNPGTYFTPE 258 (368)
T ss_pred -----chHHHHHHHHHHHcCCc-EEEEcCCCchH-HHHHhcCCCCceEEecC
Confidence 99999999999999998 88999998875 55667777789999654
No 39
>PRK03624 putative acetyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=114.58 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=93.7
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCC--HHHHHh----ccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRT--DEELLK----ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 278 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~--~e~l~~----~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V 278 (366)
.+.+|+++++|++.+.+++... ....++. ...+.. ....++++..++++||++.+... .....+..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~--~~~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYD--GHRGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeecc--CCCceEEEEEE
Confidence 3679999999999999998765 2222221 111221 22357788888999999987632 23467888999
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecccc
Q 017776 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 279 ~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~~ 330 (366)
+|+|||+|+|++|++++++.+++.+++.+.+.+ ..+.+||+|+||+..+...
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~ 132 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRIS 132 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEEe
Confidence 999999999999999999999999999998887 4789999999999876543
No 40
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.52 E-value=3.6e-14 Score=133.75 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=93.5
Q ss_pred CcccccCCceEEEcCccc---CCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCH--HH
Q 017776 1 MRERLDGGCLVILSNLGY---SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QE 68 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~---~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~--~~ 68 (366)
|+.||+.|+|||+++.+. ...|+. +.++|.+|+.||.+|+|++|+|||||+|+. +++++|+.++. .+
T Consensus 126 l~~ll~~g~IPVv~~nd~v~~~~~~~~-~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~ 204 (266)
T PRK12314 126 FESLLELGILPIVNENDAVATDEIDTK-FGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEE 204 (266)
T ss_pred HHHHHHCCCEEEEcCCCCeeeccccce-ecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHH
Confidence 457899999999996444 444443 457999999999999999999999999652 34677787763 22
Q ss_pred HHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccc
Q 017776 69 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 148 (366)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (366)
..+.. .+. . ..+.+||
T Consensus 205 ~~~~~-~~~-------------------------------------------------~-------------~~~~tGG- 220 (266)
T PRK12314 205 ILALA-GGA-------------------------------------------------G-------------SKFGTGG- 220 (266)
T ss_pred HHHHh-ccC-------------------------------------------------C-------------CCcccCc-
Confidence 22111 000 0 0123344
Q ss_pred hhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccccc
Q 017776 149 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 149 ~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~ 202 (366)
|.+|+.+|..|.+.|++ ++|+++..++. +.+++.....||.|.+
T Consensus 221 --------M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 221 --------MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAP 264 (266)
T ss_pred --------hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEcc
Confidence 99999999999999998 99999999987 5667777778999864
No 41
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.51 E-value=6e-14 Score=134.98 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=61.4
Q ss_pred CcccccCCceEEEcCcccCCC----CCee----ecCHHHHHHHHHHHcCCCEEEEEecCcccc-----cCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLGYSSS----GEVL----NCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~----g~~~----nin~D~~A~~~A~al~a~kLi~ltd~~~~~-----~~~~~i~~l~~~ 67 (366)
|++||+.|+|||+++.|.++. +.++ |+|+|++|+.+|.+|+||+||||||++++. +++++|++++..
T Consensus 178 i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~~~a~~i~~i~~~ 257 (314)
T PRK12353 178 IKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGKPNQKKLDEVTVS 257 (314)
T ss_pred HHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCCCCCeECcCcCHH
Confidence 357899999999997765443 3334 499999999999999999999999999652 357899999988
Q ss_pred HHHHHHHH
Q 017776 68 EADSLIRQ 75 (366)
Q Consensus 68 ~~~~l~~~ 75 (366)
++++++..
T Consensus 258 e~~~~~~~ 265 (314)
T PRK12353 258 EAEKYIEE 265 (314)
T ss_pred HHHHHHhc
Confidence 88887643
No 42
>PRK12686 carbamate kinase; Reviewed
Probab=99.51 E-value=5e-14 Score=134.27 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=61.1
Q ss_pred CcccccCCceEEEc-----CcccCCCCCee----ecCHHHHHHHHHHHcCCCEEEEEecCcccc-----cCCcccccCCH
Q 017776 1 MRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTL 66 (366)
Q Consensus 1 i~~ll~~g~ipvi~-----~~g~~~~g~~~----nin~D~~A~~~A~al~a~kLi~ltd~~~~~-----~~~~~i~~l~~ 66 (366)
|+.||++|+|||.+ |+.. ..+.++ +||+|.+|+.||.+|+||+||||||++++. +++++|++++.
T Consensus 176 I~~Ll~~G~IpI~~GgggIPVv~-~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~~p~ak~I~~I~~ 254 (312)
T PRK12686 176 IRTLVDGGNIVIACGGGGIPVIR-DDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDITV 254 (312)
T ss_pred HHHHHHCCCEEEEeCCCCCCeEe-cCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccCCCCCCCeECCccCH
Confidence 46899999999865 5544 345555 569999999999999999999999999552 45799999999
Q ss_pred HHHHHHHHHh
Q 017776 67 QEADSLIRQR 76 (366)
Q Consensus 67 ~~~~~l~~~~ 76 (366)
+++++++.++
T Consensus 255 ~e~~~li~~g 264 (312)
T PRK12686 255 AEAKQYIAEG 264 (312)
T ss_pred HHHHHHhhCC
Confidence 9999887543
No 43
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.51 E-value=6.4e-14 Score=129.87 Aligned_cols=74 Identities=32% Similarity=0.410 Sum_probs=67.8
Q ss_pred CcccccCCceEEEcCcc-cCCCCCe---eecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHH
Q 017776 1 MRERLDGGCLVILSNLG-YSSSGEV---LNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEA 69 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g-~~~~g~~---~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~ 69 (366)
|+.+|++|.|||++|.+ .+.+|++ .|+|+|.+|+.+|.+|+|++|+|+||++|+ + ++++++++|+.+|+
T Consensus 127 i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~ 206 (242)
T PF00696_consen 127 IRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEA 206 (242)
T ss_dssp HHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHH
T ss_pred HHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHH
Confidence 35788999999999988 8999999 999999999999999999999999999955 3 47899999999999
Q ss_pred HHHHH
Q 017776 70 DSLIR 74 (366)
Q Consensus 70 ~~l~~ 74 (366)
.++..
T Consensus 207 ~~l~~ 211 (242)
T PF00696_consen 207 EELAS 211 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99974
No 44
>PHA00673 acetyltransferase domain containing protein
Probab=99.50 E-value=3e-13 Score=116.20 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=93.0
Q ss_pred eCcccCHHHHHHHHHHHHHcCc---C-ccCC----HHHHHhc-cCcEEEEEECCEEEEEEEEeeecC-----CCeEEEEE
Q 017776 210 TAKVTDLSGIKQIIQPLVESGA---L-VRRT----DEELLKA-LDSFYVVEREGQIIACAALFPFFK-----EKCGEVAA 275 (366)
Q Consensus 210 ~a~~~Di~~i~~L~~~~~~~~~---~-~~~~----~e~l~~~-~~~~~v~~~dg~iVG~~~l~~~~~-----~~~~~L~~ 275 (366)
-++.+|+++|.+|+.+...... . .+.. .+.+..+ ...+++++++|++||++.+...+. ...+.|..
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~ 90 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTES 90 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEE
Confidence 4788999999999877311111 1 1111 1223322 346788888999999998875432 25678999
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeH---HHHHHHHhCCCeEeccc
Q 017776 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFRECSIE 329 (366)
Q Consensus 276 l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~---~a~~~Y~klGF~~~g~~ 329 (366)
++|+|++||+|+|++|+++++++++++|+..+++..+ ++.+||.++|+++..+.
T Consensus 91 l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~~ 147 (154)
T PHA00673 91 IFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNRT 147 (154)
T ss_pred EEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhchh
Confidence 9999999999999999999999999999999999883 78999999999997754
No 45
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=1e-12 Score=110.52 Aligned_cols=124 Identities=22% Similarity=0.279 Sum_probs=101.0
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCc---CccCCHHHHHhcc------CcEEEEEE---CCEEEEEEEEeeecC----C
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGA---LVRRTDEELLKAL------DSFYVVER---EGQIIACAALFPFFK----E 268 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~---~~~~~~e~l~~~~------~~~~v~~~---dg~iVG~~~l~~~~~----~ 268 (366)
...||.++++|.+.+.+|++++..... +...+.+.+..+. .+++++.. ++.++|++.++...+ .
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k 82 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGK 82 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccccc
Confidence 468999999999999999998755443 3444566666642 34555544 789999999886433 2
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecc
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~ 328 (366)
...||..++|.|+|||+|+|+.|++.+.+.|.+.|+.++...+ .+|+.||+|.|++....
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 5779999999999999999999999999999999999999888 69999999999997543
No 46
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.49 E-value=4.9e-13 Score=119.78 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=94.3
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcC-cCccCC-HH---H-H----Hhc---c-Cc--EEEEEECCEEEEEEEEeeecCCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRRT-DE---E-L----LKA---L-DS--FYVVEREGQIIACAALFPFFKEK 269 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~-~~~~~~-~e---~-l----~~~---~-~~--~~v~~~dg~iVG~~~l~~~~~~~ 269 (366)
+.||+++++|.+.+.+++.+..... +..++. .+ . + ... . .. +++...+++++|++.+.... ..
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~-~~ 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN-DT 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC-CC
Confidence 5799999999999999998874321 222221 11 1 1 111 1 12 23445688999999997553 34
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
.++|+.++|+|+|||+|+|++|+++++++++++|+..+.+.+ ..|.+||+|+||+..+..
T Consensus 123 ~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 123 DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 678999999999999999999999999999999999999987 589999999999987754
No 47
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.49 E-value=6.6e-13 Score=113.26 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=93.1
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc-Cc--EEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DS--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 282 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~-~~--~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~ 282 (366)
++||+++.+|++.+.++.... ...++..+.+.... .. .+++..+++++|++.+.... +..++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA----HAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc----CCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 579999999999999986533 22345555554332 22 23456789999999887543 34667889999999
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 283 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 283 RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
||+|+|+.+++.+++.+++.+++.+.+.+ .++.+||+|+||+..+..
T Consensus 76 rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~ 126 (146)
T PRK09491 76 QRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIR 126 (146)
T ss_pred ccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeee
Confidence 99999999999999999999999998887 589999999999987743
No 48
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.48 E-value=4.9e-13 Score=102.40 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.2
Q ss_pred EEECCEEEEEEEEeeecCC----CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhC
Q 017776 250 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 321 (366)
Q Consensus 250 ~~~dg~iVG~~~l~~~~~~----~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~kl 321 (366)
++++|++||++.+.+.... ...+|..++|+|+|||+|+|+.|++++++.+++.|++.+.+.+ ..+.+||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4689999999999986553 7999999999999999999999999999999999999999998 5789999999
Q ss_pred CCe
Q 017776 322 GFR 324 (366)
Q Consensus 322 GF~ 324 (366)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 49
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.48 E-value=7.7e-13 Score=107.92 Aligned_cols=103 Identities=30% Similarity=0.474 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCcCcc---------CCHHHHHhcc----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccC
Q 017776 215 DLSGIKQIIQPLVESGALVR---------RTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 215 Di~~i~~L~~~~~~~~~~~~---------~~~e~l~~~~----~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~ 281 (366)
|++++.+|+........... ...+.+...+ ..+++++.+++++|++.+. ...+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 78899999988655533211 3344444333 3689999999999999986 2345999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCC
Q 017776 282 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 323 (366)
Q Consensus 282 ~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF 323 (366)
|||+|+|++|+++++++++. +++.+.+.. ..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999976 899888887 589999999998
No 50
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.47 E-value=4.5e-13 Score=114.71 Aligned_cols=122 Identities=25% Similarity=0.387 Sum_probs=90.8
Q ss_pred cceEEeCcccCHH-HHHHHHHHHHHcCcCccCCHHHHHhcc---------CcEEEEEE--CCEEEEEEEEeee-----cC
Q 017776 205 YEGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL---------DSFYVVER--EGQIIACAALFPF-----FK 267 (366)
Q Consensus 205 ~~~iR~a~~~Di~-~i~~L~~~~~~~~~~~~~~~e~l~~~~---------~~~~v~~~--dg~iVG~~~l~~~-----~~ 267 (366)
.+.||+++++|.+ .+..++..... ..+++.+.+...+ ..+++++. +++++|++.+... ..
T Consensus 6 ~~~ir~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~ 82 (150)
T PLN02706 6 KFKVRRLEISDKSKGFLELLQQLTV---VGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNC 82 (150)
T ss_pred ceEEeEhhhcccchHHHHHHHhccC---CCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCC
Confidence 4679999999998 58888765422 2244433333321 12455555 6899999987422 11
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 268 ~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
...++|..++|+|+|||+|+|+.|++.++++|+++|++++.+.+ .....||+|+||+..+..
T Consensus 83 ~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~~ 145 (150)
T PLN02706 83 GKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQ 145 (150)
T ss_pred CcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehhh
Confidence 24567888999999999999999999999999999999999998 344679999999997754
No 51
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.47 E-value=1.9e-13 Score=130.31 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=92.9
Q ss_pred CcccccCCceEEEc-----CcccCCCCCeee----cCHHHHHHHHHHHcCCCEEEEEecCccc-c----cCCcccccCCH
Q 017776 1 MRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDGPIL-D----ESGHLIRFLTL 66 (366)
Q Consensus 1 i~~ll~~g~ipvi~-----~~g~~~~g~~~n----in~D~~A~~~A~al~a~kLi~ltd~~~~-~----~~~~~i~~l~~ 66 (366)
|+.||++|+|||++ |+..+. |+++| ||+|.+|+.+|.+|+||+|||||||+++ + +++++|++++.
T Consensus 174 I~~Ll~~g~IpI~~GggGiPv~~~~-~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~~pda~~i~~Is~ 252 (308)
T cd04235 174 IKTLVDNGVIVIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKALEQVTV 252 (308)
T ss_pred HHHHHHCCCEEEEECCCccCEEEcC-CceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCCCCCCeEcCCcCH
Confidence 45789999999999 666654 66665 6889999999999999999999999954 2 35899999999
Q ss_pred HHHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccc
Q 017776 67 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 146 (366)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (366)
+++.+++.++. |.+|
T Consensus 253 ~e~~~l~~~g~-----------------------------------------------------------------~~tG 267 (308)
T cd04235 253 EELEKYIEEGQ-----------------------------------------------------------------FAPG 267 (308)
T ss_pred HHHHHHHhcCc-----------------------------------------------------------------cccC
Confidence 99888875432 2233
Q ss_pred cchhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 147 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 147 ~~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
| |.+|+++|..++..|...++|.+ ++. +.+++... .||.|
T Consensus 268 G---------M~pKv~aA~~~a~~gg~~v~I~~---~~~-i~~aL~G~-~GT~I 307 (308)
T cd04235 268 S---------MGPKVEAAIRFVESGGKKAIITS---LEN-AEAALEGK-AGTVI 307 (308)
T ss_pred C---------cHHHHHHHHHHHHhCCCeEEECC---HHH-HHHHHCCC-CCeEE
Confidence 3 99999999999998877788876 233 44445444 68876
No 52
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.47 E-value=9.9e-13 Score=118.01 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=93.7
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHc-CcCccC-CHH----HH----Hhcc-----CcEEEEE-ECCEEEEEEEEeeecCCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVES-GALVRR-TDE----EL----LKAL-----DSFYVVE-REGQIIACAALFPFFKEK 269 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~-~~~~~~-~~e----~l----~~~~-----~~~~v~~-~dg~iVG~~~l~~~~~~~ 269 (366)
..||+++++|++.+.+++...+.. .+..++ +.+ .+ .... ..++++. .++++||++.+.... ..
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~-~~ 125 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN-DT 125 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC-CC
Confidence 568999999999999999876432 222222 111 11 1111 1344444 568999999987543 34
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
..+|..++|+|+|||+|+|++|++.+++++++.|++.+.+.+ +.+.+||+|+||+..+..
T Consensus 126 ~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 126 DARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 688999999999999999999999999999999999999887 588999999999998765
No 53
>PRK09831 putative acyltransferase; Provisional
Probab=99.46 E-value=7.1e-13 Score=113.52 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=86.8
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHH-----------Hhc--cCcEEEEEECCEEEEEEEEeeecCCCeEE
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEL-----------LKA--LDSFYVVEREGQIIACAALFPFFKEKCGE 272 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l-----------~~~--~~~~~v~~~dg~iVG~~~l~~~~~~~~~~ 272 (366)
+.||+++++|.+.+.+++............+.+.+ ... ...++++..+|+++|++.+.. .+
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~ 74 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HY 74 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------ce
Confidence 36899999999999999987654433222222222 111 135788888999999988762 46
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEecccc
Q 017776 273 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 273 L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~~ 330 (366)
+..++|+|+|||+|+|++||+++++.+.. +.+.+ ..+.+||+|+||+.++...
T Consensus 75 i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 75 IDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHHCCCEEeeccc
Confidence 78899999999999999999999999875 22333 5889999999999998754
No 54
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.46 E-value=1.8e-13 Score=134.35 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=98.8
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHH-HHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQE-ADSL 72 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~-~~~l 72 (366)
|+.||+.|.|||+++.+.....++-.+|+|.+|+.||.+|+||+|+|||||+++ + +++++|++++..+ ....
T Consensus 117 i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~ 196 (363)
T TIGR01027 117 LEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLG 196 (363)
T ss_pred HHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHH
Confidence 357899999999998776655566678999999999999999999999999965 2 2468999997542 2222
Q ss_pred HHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhh
Q 017776 73 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 152 (366)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
+..+. + .++.+||
T Consensus 197 i~~~~-------------------------------------------------~-------------~~~gtGG----- 209 (363)
T TIGR01027 197 VAGDS-------------------------------------------------G-------------SSVGTGG----- 209 (363)
T ss_pred hhcCC-------------------------------------------------C-------------cCcCcCC-----
Confidence 21110 0 1133444
Q ss_pred hccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 153 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 153 ~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
|.+||.+|..|...|++ ++|+++..++. +..++.....||.|.+.
T Consensus 210 ----M~~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 210 ----MRTKLQAADLATRAGVP-VIIASGSKPEK-IADALEGAPVGTLFHAQ 254 (363)
T ss_pred ----chHHHHHHHHHHHCCCe-EEEEeCCCccH-HHHHhcCCCCcEEEeeC
Confidence 99999999999999999 99999998875 55667777789999653
No 55
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.46 E-value=1.6e-12 Score=112.13 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=92.0
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcC---cCccCCHHHHHhcc-----CcEEEEEECCEEEEEEEEeeecC---CCeEEEE
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK---EKCGEVA 274 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~---~~~~~~~e~l~~~~-----~~~~v~~~dg~iVG~~~l~~~~~---~~~~~L~ 274 (366)
+.||+++.+|++.+.+++.+..... .....+.+.+...+ ..++++..++++||++.+..... ...+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 6799999999999999986432111 11122333343322 24577778899999999875322 123455
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHH-cCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 275 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 275 ~l~V~p~~RgqGiG~~Ll~~l~~~a~~-~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
.++|+|+|||+|+|++|++.+++++.+ .+++.+.+.+ .++.+||+|+||+..+..
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 499999999999999999999999987 6888888777 589999999999998863
No 56
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.46 E-value=9.7e-13 Score=114.32 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=89.3
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc-CcEEEEE-ECCEEEEEEEEeee-cCCCeEEEEEEEEccCCcC
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPF-FKEKCGEVAAIGVSPECRG 284 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~-~~~~v~~-~dg~iVG~~~l~~~-~~~~~~~L~~l~V~p~~Rg 284 (366)
||+++.+|++++.+|+................+.... ..+++++ .++++||++.+... ......++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 5889999999999999765322211111111122222 3456666 46899999876533 2335678889999999999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEec
Q 017776 285 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 327 (366)
Q Consensus 285 qGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g 327 (366)
+|+|++|+++++++++..++..+.+.+ +.+++||+|+||+...
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 999999999999999999999998877 5889999999998744
No 57
>PRK12354 carbamate kinase; Reviewed
Probab=99.46 E-value=2.9e-13 Score=128.53 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=94.3
Q ss_pred CcccccCCceEEEc-----CcccCCCCCeee----cCHHHHHHHHHHHcCCCEEEEEecCccc-c----cCCcccccCCH
Q 017776 1 MRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDGPIL-D----ESGHLIRFLTL 66 (366)
Q Consensus 1 i~~ll~~g~ipvi~-----~~g~~~~g~~~n----in~D~~A~~~A~al~a~kLi~ltd~~~~-~----~~~~~i~~l~~ 66 (366)
|++||++|+|||.+ |+..+.+|+++| ||+|.+|+.||.+|+||+|+|||||+++ + ++.++|++++.
T Consensus 168 I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~~p~~k~i~~it~ 247 (307)
T PRK12354 168 IRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGKPTQRAIAQATP 247 (307)
T ss_pred HHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCCCCCCeECCCCCH
Confidence 46899999998887 888877787877 5799999999999999999999999954 2 34679999998
Q ss_pred HHHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccc
Q 017776 67 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 146 (366)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (366)
++++++ . |.+|
T Consensus 248 ~e~~~~----~-----------------------------------------------------------------f~~G 258 (307)
T PRK12354 248 DELREL----G-----------------------------------------------------------------FAAG 258 (307)
T ss_pred HHHHhh----C-----------------------------------------------------------------CCcC
Confidence 887765 1 1222
Q ss_pred cchhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 147 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 147 ~~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
| |.+|+++|.+++..|..+++|.+ .. .+.+++... .||.|..+
T Consensus 259 g---------M~pKV~AA~~~~~~gg~~viI~~---~~-~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 259 S---------MGPKVEAACEFVRATGKIAGIGS---LE-DIQAILAGE-AGTRISPE 301 (307)
T ss_pred C---------hHHHHHHHHHHHHhCCCEEEECC---HH-HHHHHHCCC-CceEEecC
Confidence 3 99999999999998888888853 22 255666543 79998654
No 58
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.43 E-value=2.3e-12 Score=110.61 Aligned_cols=125 Identities=26% Similarity=0.278 Sum_probs=94.4
Q ss_pred EEeCc-ccCHHHHHHHHHHHHHcCc-CccCC---HHHHHhcc-----CcEEEEEECCEEEEEEEEeee-----cCCCeEE
Q 017776 208 TRTAK-VTDLSGIKQIIQPLVESGA-LVRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPF-----FKEKCGE 272 (366)
Q Consensus 208 iR~a~-~~Di~~i~~L~~~~~~~~~-~~~~~---~e~l~~~~-----~~~~v~~~dg~iVG~~~l~~~-----~~~~~~~ 272 (366)
+|+++ .+|++.|.+++++.....+ ...++ .+.+...+ ...+|+..+|+++|++.+... ..+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 69999 9999999999987643333 22222 22222222 257899999999999988641 1346778
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHc-CCCEEEEEe----HHHHHHHHhCCCeEecccccc
Q 017776 273 VAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSIEMIP 332 (366)
Q Consensus 273 L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~-g~~~v~l~t----~~a~~~Y~klGF~~~g~~~lp 332 (366)
++.++|+|+|||+|+|+.+++.+++.+.+. +++++.+.+ .+++++|+|+||+.++...+|
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~~ 145 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEFP 145 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEES
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEECC
Confidence 999999999999999999999999999876 899999998 589999999999999988777
No 59
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.42 E-value=6.7e-13 Score=140.68 Aligned_cols=136 Identities=20% Similarity=0.177 Sum_probs=103.2
Q ss_pred CcccccCCceEEEcCcccCCCC-------CeeecCHHHHHHHHHHHcCCCEEEEEecCcccc------cCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSG-------EVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g-------~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~------~~~~~i~~l~~~ 67 (366)
|+.||+.|.|||+++++...+- ...|+|+|.+|+.||.+|+||+|+|+||++++. +++++|++++..
T Consensus 142 l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~ 221 (718)
T PLN02418 142 VESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKE 221 (718)
T ss_pred HHHHHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceeccc
Confidence 4678999999999997765532 337999999999999999999999999999652 246788888765
Q ss_pred HHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccccc
Q 017776 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
+.+..+..+. .+ ...+||
T Consensus 222 ~~~~~i~~~~-------------------------------------------------~s-------------~~~tGG 239 (718)
T PLN02418 222 KHQDEITFGE-------------------------------------------------KS-------------RVGRGG 239 (718)
T ss_pred chhhhhhccc-------------------------------------------------cc-------------ccCCCC
Confidence 5444332111 00 112333
Q ss_pred chhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccceEEe
Q 017776 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRT 210 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~~iR~ 210 (366)
|.+||++|..+.+.|++ ++|+++..++. +.+++.....||.|.++.-+ +.+
T Consensus 240 ---------M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~-~~~ 290 (718)
T PLN02418 240 ---------MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQDAHL-WAP 290 (718)
T ss_pred ---------cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEeccccch-hhh
Confidence 99999999999999998 99999999986 55677788899999876543 444
No 60
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.42 E-value=7.2e-12 Score=107.53 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=91.3
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCcc----CCHHHH---Hh-----ccCcEEEEEE-CCEEEEEEEEeeecC-CCeEEE
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEEL---LK-----ALDSFYVVER-EGQIIACAALFPFFK-EKCGEV 273 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~----~~~e~l---~~-----~~~~~~v~~~-dg~iVG~~~l~~~~~-~~~~~L 273 (366)
||+++.+|++.+.++++......+... .+.+.+ .. .-..++++.. +|+++|++.+.+... ...+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 799999999999999987543333321 122121 11 1234566665 999999999986543 466777
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHH-HHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 274 AAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 274 ~~l~V~p~~RgqGiG~~Ll~~l~~~a-~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
. ++|.|+||++|+|+.|+..++++| ++.|++.+++.+ .+++.||+++||+..+..
T Consensus 81 ~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~ 140 (155)
T PF13420_consen 81 S-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGEL 140 (155)
T ss_dssp E-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEE
T ss_pred e-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEE
Confidence 5 888899999999999999999999 999999999888 589999999999999854
No 61
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.42 E-value=2.1e-12 Score=106.89 Aligned_cols=109 Identities=24% Similarity=0.405 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCcCccCCHHHHHhcc----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHH
Q 017776 215 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 290 (366)
Q Consensus 215 Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~ 290 (366)
|++++.++....+. .+++.+.+...+ ..+++...+++++|++.+.... ...++..++|+|+|||+|+|++
T Consensus 1 d~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAAFA----FPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVL--DEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhhCC----CCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecC--CCeEEEEEEECHHHcCCCHHHH
Confidence 56777777654433 355555555443 2456677789999999987433 4567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 291 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 291 Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
|++++++++.+.+++.+.+.+ ..+.+||+|+||+..+..
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 117 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIR 117 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccc
Confidence 999999999999999998876 478999999999998753
No 62
>PRK10314 putative acyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=112.71 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=89.1
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHh-c---cCcEEEEEECCEEEEEEEEeeecC-CCeEEEEEEEEccCC
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK-A---LDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPEC 282 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~-~---~~~~~v~~~dg~iVG~~~l~~~~~-~~~~~L~~l~V~p~~ 282 (366)
+..++.+++.++..+..+.+......+.. ++.. + ....+++..+++++|++.+.+..+ ....+|+.++|+|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~--e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~ 86 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ--DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEAL 86 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc--ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHH
Confidence 34566677778888877766544333322 2221 1 123455667899999999986432 235799999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHc-CCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 283 RGQGQGDKLLDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 283 RgqGiG~~Ll~~l~~~a~~~-g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
||+|+|++||++++++++.. +...+.+.+ ..+..||+|+||+.++..
T Consensus 87 rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 87 RGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 99999999999999999765 677888887 467899999999998864
No 63
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.41 E-value=8.2e-13 Score=140.19 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=100.9
Q ss_pred CcccccCCceEEEcCcccCCCCC-------eeecCHHHHHHHHHHHcCCCEEEEEecCcccc------cCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGE-------VLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~-------~~nin~D~~A~~~A~al~a~kLi~ltd~~~~~------~~~~~i~~l~~~ 67 (366)
|+.||+.|.||||++++...+.+ -+|+|+|.+|+.||.+|+||+|+|||||+|+. +++++|++++..
T Consensus 134 l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~ 213 (715)
T TIGR01092 134 VHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKE 213 (715)
T ss_pred HHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeeccc
Confidence 46789999999999866654332 25999999999999999999999999999652 347889988865
Q ss_pred HHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccccc
Q 017776 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
+.+..+..+. .+. ..+||
T Consensus 214 ~~~~~i~~~~-------------------------------------------------~~~-------------~~tGG 231 (715)
T TIGR01092 214 KHQGEITFGT-------------------------------------------------KSR-------------LGRGG 231 (715)
T ss_pred chhhhhccCc-------------------------------------------------ccc-------------cCCCC
Confidence 5442221111 011 22333
Q ss_pred chhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCccc
Q 017776 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 206 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~~~ 206 (366)
|.+||++|..+.+.|++ ++|+++..++. +..++.....||.|..+..|
T Consensus 232 ---------M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 232 ---------MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred ---------chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEecccchh
Confidence 99999999999999998 99999998876 56677777789999766443
No 64
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.40 E-value=6e-12 Score=96.23 Aligned_cols=75 Identities=35% Similarity=0.679 Sum_probs=64.6
Q ss_pred cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCe
Q 017776 246 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 324 (366)
Q Consensus 246 ~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~ 324 (366)
.+++++++++++|++.+.+.. +..+|..++|+|+|||+|+|++|++++++.+. ...+++.+ +.+.+||+++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~--~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~---~~~i~l~~~~~~~~fY~~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE--DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK---SKKIFLFTNPAAIKFYEKLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT--TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT---CSEEEEEEEHHHHHHHHHTTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC--CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC---CCcEEEEEcHHHHHHHHHCcCC
Confidence 578899999999999997543 58999999999999999999999999988884 35667776 7899999999998
Q ss_pred E
Q 017776 325 E 325 (366)
Q Consensus 325 ~ 325 (366)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 65
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=6.5e-12 Score=109.52 Aligned_cols=126 Identities=28% Similarity=0.316 Sum_probs=101.3
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcC----ccCCHHHHHhcc----C---cEEEEEEC-CEEEEEEEEeeecCC----C
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL----D---SFYVVERE-GQIIACAALFPFFKE----K 269 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~----~~~~~e~l~~~~----~---~~~v~~~d-g~iVG~~~l~~~~~~----~ 269 (366)
+.||+++..|++.|.++|+........ .+.+.+.+..+. . .++|+..+ |+++|++.+.++.+. .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 579999999999999999998766542 444555554332 1 56677655 999999999987542 3
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecccccc
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIP 332 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~~lp 332 (366)
..+. .++|+|++||+|+|++|++.+++.++.+|++.+.... ..+.+|++++||+.++...--
T Consensus 82 tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~v 147 (169)
T COG1247 82 TVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEV 147 (169)
T ss_pred EEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEecccccc
Confidence 4555 7999999999999999999999999999998887766 489999999999999976433
No 66
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.37 E-value=7.8e-12 Score=106.37 Aligned_cols=85 Identities=21% Similarity=0.238 Sum_probs=69.0
Q ss_pred CcEEEEEECCE--EEEEEEEeeec--CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHH
Q 017776 245 DSFYVVEREGQ--IIACAALFPFF--KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTAD 316 (366)
Q Consensus 245 ~~~~v~~~dg~--iVG~~~l~~~~--~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~ 316 (366)
.+++++..|++ .||++...... +...++|..++|+++|||+|||++|.+.+++.++.+|+..|.|+| ..|.+
T Consensus 55 p~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~ 134 (165)
T KOG3139|consen 55 PCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALR 134 (165)
T ss_pred ceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHH
Confidence 34444433333 58877766321 135799999999999999999999999999999999999999999 48999
Q ss_pred HHHhCCCeEeccc
Q 017776 317 WFKSRGFRECSIE 329 (366)
Q Consensus 317 ~Y~klGF~~~g~~ 329 (366)
+|+++||+..++.
T Consensus 135 LY~sLGF~r~~r~ 147 (165)
T KOG3139|consen 135 LYESLGFKRDKRL 147 (165)
T ss_pred HHHhcCceEecce
Confidence 9999999998765
No 67
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.37 E-value=7.1e-12 Score=129.36 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=94.8
Q ss_pred ccceEEeC-cccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----CcEEEEEE--CCEEEEEEEEeee-----cCCCeE
Q 017776 204 LYEGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF-----FKEKCG 271 (366)
Q Consensus 204 ~~~~iR~a-~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~v~~~--dg~iVG~~~l~~~-----~~~~~~ 271 (366)
..+.||++ +++|++++.++++... ..+++.+.+.... ..++++.. +|++|||+..... ......
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~----~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~ 156 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARG----MVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGS 156 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcC----CCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCe
Confidence 34789997 6899999999987632 2334444443322 34677764 6899999975421 112357
Q ss_pred EEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 272 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 272 ~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
+|.+++|+|+|||+|+|++||+++++++++.|+..+.+.+ ..+++||+|+||+.+...
T Consensus 157 ~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y 218 (547)
T TIGR03103 157 SLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVF 218 (547)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEE
Confidence 8999999999999999999999999999999999999887 588999999999987643
No 68
>PRK10514 putative acetyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=104.48 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=82.3
Q ss_pred ceEEeCcccCHHHHHHHHHHHHH--cCcCccCCHHHHHhcc------CcEEEE-EECCEEEEEEEEeeecCCCeEEEEEE
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRRTDEELLKAL------DSFYVV-EREGQIIACAALFPFFKEKCGEVAAI 276 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~--~~~~~~~~~e~l~~~~------~~~~v~-~~dg~iVG~~~l~~~~~~~~~~L~~l 276 (366)
+.||+++++|.+.+.+++.+... ..+..+.+.+.+...+ ..++++ ..+++++|++.+.. .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 57999999999999999987432 2222233333332211 223444 46899999998752 246689
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecccc
Q 017776 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 277 ~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~~ 330 (366)
+|+|+|||+|+|++|++++++.+. .+.+.+ .++.+||+|+||+..+...
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~~~~~-----~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHALSLHP-----ELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EECHHhccCCHHHHHHHHHHHhcc-----ccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 999999999999999999998753 333333 5899999999999988654
No 69
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.36 E-value=1.6e-12 Score=116.60 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=102.1
Q ss_pred CcccccCCceEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccccc---C---CcccccCCHHHHHH
Q 017776 1 MRERLDGGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILDE---S---GHLIRFLTLQEADS 71 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~~~---~---~~~i~~l~~~~~~~ 71 (366)
|..||.-|.|||++.++..+.-++.|-| +|.+|+.+|..++||-||+||||+++.. + .++|...+..+
T Consensus 138 i~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~--- 214 (285)
T KOG1154|consen 138 ISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGD--- 214 (285)
T ss_pred HHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCC---
Confidence 4679999999999999998888888988 9999999999999999999999997732 1 23333222211
Q ss_pred HHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhh
Q 017776 72 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 151 (366)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
. -..-+||.++.++.| |
T Consensus 215 -----~-----------------------------------------~v~~tfG~~SkvGtG-G---------------- 231 (285)
T KOG1154|consen 215 -----P-----------------------------------------QVSTTFGSKSKVGTG-G---------------- 231 (285)
T ss_pred -----C-----------------------------------------CCccccCccCccCcC-c----------------
Confidence 0 012356777777777 5
Q ss_pred hhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccC
Q 017776 152 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 152 ~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d 203 (366)
|.+|+.+|..|+..||+ |.|++|..+.. +..++.....||+|...
T Consensus 232 -----M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 232 -----METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQL 276 (285)
T ss_pred -----chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhhc
Confidence 89999999999999999 89999999986 55677777788988654
No 70
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.33 E-value=4.7e-12 Score=117.59 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=66.0
Q ss_pred CcccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCHHHH
Q 017776 1 MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEA 69 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~~~~ 69 (366)
|++++++|.|||+++. |.+++|+++|+ |+|.+|+.+|.+|+|++|+|+||++|+. ++++++++|+.+|+
T Consensus 119 l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~ 198 (239)
T cd04246 119 ILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEM 198 (239)
T ss_pred HHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHH
Confidence 3568999999999997 88999999999 8999999999999999999999999652 35889999999998
Q ss_pred HHHHH
Q 017776 70 DSLIR 74 (366)
Q Consensus 70 ~~l~~ 74 (366)
+++..
T Consensus 199 ~~l~~ 203 (239)
T cd04246 199 LEMAS 203 (239)
T ss_pred HHHHh
Confidence 88763
No 71
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.33 E-value=4.7e-12 Score=117.63 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=66.2
Q ss_pred CcccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHH
Q 017776 1 MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEA 69 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~ 69 (366)
|+.+++.|.|||+++. +.+++|+++|+ |+|.+|+.+|.+|+|++|+|+||++|+ | ++++++++|+.+|+
T Consensus 119 l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea 198 (239)
T cd04261 119 IRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEM 198 (239)
T ss_pred HHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHH
Confidence 3568999999999998 88999999999 999999999999999999999999965 2 25889999999998
Q ss_pred HHHHH
Q 017776 70 DSLIR 74 (366)
Q Consensus 70 ~~l~~ 74 (366)
+++..
T Consensus 199 ~~l~~ 203 (239)
T cd04261 199 LEMAS 203 (239)
T ss_pred HHHHh
Confidence 88763
No 72
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.32 E-value=5.4e-12 Score=114.34 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=60.7
Q ss_pred cccccCCceEEEcCccc----CCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-ccCCcccccCCHHHH
Q 017776 2 RERLDGGCLVILSNLGY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEA 69 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~----~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~~~~~~i~~l~~~~~ 69 (366)
++++..|.|||+.|.+. ...++.+|+|+|++|+.+|.+|+|++|||+||++++ +.+++++++++..++
T Consensus 85 ~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 85 TDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred HHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 45788999999999988 678899999999999999999999999999999965 567999999987654
No 73
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=107.68 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=95.0
Q ss_pred CccceEEeCcccCHH--HHHHHHHHHHHcCcCccCCHHHHHhcc----CcEEEEEE---CC----EEEEEEEEeeecCC-
Q 017776 203 DLYEGTRTAKVTDLS--GIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE- 268 (366)
Q Consensus 203 d~~~~iR~a~~~Di~--~i~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~v~~~---dg----~iVG~~~l~~~~~~- 268 (366)
.....+|++...|++ .+..+....+... .+|+...+...+ ..+++... ++ +++|++........
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~ 86 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR--LPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRP 86 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC--CcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCc
Confidence 445779999999998 6666644333221 566666666544 34555554 33 59999998643332
Q ss_pred ---CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCC-CEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 269 ---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-DMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 269 ---~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~-~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
..++|..++|+|+|||+|+|++|++.+++.+++.+. ..+.+.+ ..|++||+|+||+.....
T Consensus 87 ~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 87 SADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155 (177)
T ss_pred cccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeee
Confidence 278999999999999999999999999999999886 8888888 589999999999998754
No 74
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.30 E-value=9e-12 Score=116.09 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=66.9
Q ss_pred cccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~~~~~ 70 (366)
+.+|+.|.|||+++. +.+++|+++|+ ++|.+|+.||.+|+|++|+|+||++|+. +++++|++|+.+|++
T Consensus 125 ~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~ 204 (244)
T cd04260 125 LSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVF 204 (244)
T ss_pred HHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHH
Confidence 568899999999997 88999999999 5999999999999999999999999652 368999999999999
Q ss_pred HHHHHh
Q 017776 71 SLIRQR 76 (366)
Q Consensus 71 ~l~~~~ 76 (366)
+++..|
T Consensus 205 ~l~~~g 210 (244)
T cd04260 205 QMAHQG 210 (244)
T ss_pred HHHHcC
Confidence 987543
No 75
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.29 E-value=6.6e-11 Score=114.60 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=95.7
Q ss_pred CccceEEeCcccCHHHHHHHHHHHHHcCc-CccCCHHHHHhccC--cEEEEEE-----CCEEEEEEEEeeecCCCeEEEE
Q 017776 203 DLYEGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD--SFYVVER-----EGQIIACAALFPFFKEKCGEVA 274 (366)
Q Consensus 203 d~~~~iR~a~~~Di~~i~~L~~~~~~~~~-~~~~~~e~l~~~~~--~~~v~~~-----dg~iVG~~~l~~~~~~~~~~L~ 274 (366)
++.++||+++++|++.+.+|.+....... ...++.+.+...+. ..+++.. ++.+||++.+.. .....+|.
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~ 261 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFID 261 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEE
Confidence 34478999999999999999987643332 23456666655442 3443332 567999998764 34678999
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe------HHHHHHHHhCCCeEe
Q 017776 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 326 (366)
Q Consensus 275 ~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t------~~a~~~Y~klGF~~~ 326 (366)
.++|+|.+||+|+|++||+++++.+++.|++.+++.+ .+++.||+++||+..
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 9999999999999999999999999999999888865 479999999999864
No 76
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.28 E-value=1.6e-10 Score=102.05 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=93.8
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHH---c--CcC-ccCCHHHHHhcc-----------CcEEEEEECCEEEEEEEEeeec
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVE---S--GAL-VRRTDEELLKAL-----------DSFYVVEREGQIIACAALFPFF 266 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~---~--~~~-~~~~~e~l~~~~-----------~~~~v~~~dg~iVG~~~l~~~~ 266 (366)
+.+.+|+++++|.+.+.+++..... . .+. .+.+.+...+.+ ..++++..++++||++.+....
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 4578999999999999999843221 1 111 112333322221 1257777799999999987643
Q ss_pred -CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-cCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 267 -KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 267 -~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~-~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
....++++ ++++|+|||+|+|+++++.+++++.+ .+++++.+.+ .++.++|+|+||+..+..
T Consensus 89 ~~~~~~~ig-~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~ 156 (179)
T PRK10151 89 PLNKTAYIG-YWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCL 156 (179)
T ss_pred cCCCceEEE-EEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEe
Confidence 33567885 78999999999999999999999964 5899998877 589999999999998864
No 77
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.27 E-value=8.4e-11 Score=104.42 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=92.0
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcC-cC-ccC-CHHH----HHh----ccCcEEEEEECCEEEEEEEEeeecC-CCeEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESG-AL-VRR-TDEE----LLK----ALDSFYVVEREGQIIACAALFPFFK-EKCGE 272 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~-~~-~~~-~~e~----l~~----~~~~~~v~~~dg~iVG~~~l~~~~~-~~~~~ 272 (366)
.+.+|+++++|++.+.++........ +. .+. .... +.. .....|++..+|++||++.+..... ...++
T Consensus 6 ~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~ 85 (186)
T PRK15130 6 SVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAE 85 (186)
T ss_pred eeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEE
Confidence 46899999999999999976543222 21 111 1111 111 1224677778999999999876432 34567
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHH-HcCCCEEEEEe----HHHHHHHHhCCCeEecc
Q 017776 273 VAAIGVSPECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 273 L~~l~V~p~~RgqGiG~~Ll~~l~~~a~-~~g~~~v~l~t----~~a~~~Y~klGF~~~g~ 328 (366)
+ .++|+|+|||+|+|+++++.+++++. ..+++++.+.+ .++.+||+|+||+..+.
T Consensus 86 ~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 86 F-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred E-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 7 59999999999999999999999996 57999998887 48999999999999875
No 78
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.27 E-value=1.4e-10 Score=101.28 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=107.7
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----CcEEEEEECCEEEEEEEEeeecC----CCeEEEEE
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAA 275 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~v~~~dg~iVG~~~l~~~~~----~~~~~L~~ 275 (366)
+++.||..++.|++.+.++.+..+..+. ....-+.+.... ..-+|+.++|++||++.+++..- ....-|+.
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~~~~-e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFGPGR-EAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhhcch-HHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 3578999999999999999988877221 111122222222 24678888899999999997532 24566899
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEeccccccHHHHhhhcCCCCceeEEeecCC
Q 017776 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 354 (366)
Q Consensus 276 l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L~~ 354 (366)
++|+|+|||||||++|++..++.++..|+..+.+. ....+|.++||+......++.. + +..+..++++.|..
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vl--Gdp~YY~rfGF~~~~~~~l~~p----~-~~~~~~fl~~~L~~ 152 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVL--GDPTYYSRFGFEPAAGAKLYAP----G-PVPDERFLALELGD 152 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEe--cCcccccccCcEEccccccccC----C-CCCCceEEEEEccC
Confidence 99999999999999999999999999999998764 4468999999999987766531 1 13455777788754
No 79
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.26 E-value=1.7e-11 Score=115.18 Aligned_cols=72 Identities=21% Similarity=0.143 Sum_probs=60.2
Q ss_pred CcccccCCceEEEcCccc-------CCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCH
Q 017776 1 MRERLDGGCLVILSNLGY-------SSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTL 66 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~-------~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~ 66 (366)
|+++|+.|.|||+++... +..|+..|+|+|++|+.+|.+|+|++|+|+||++|+ + +++++|++++.
T Consensus 128 l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~ 207 (262)
T cd04255 128 LPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISA 207 (262)
T ss_pred HHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCH
Confidence 357899999999999832 345778999999999999999999999999999965 2 36899999998
Q ss_pred HHHHHH
Q 017776 67 QEADSL 72 (366)
Q Consensus 67 ~~~~~l 72 (366)
.++.++
T Consensus 208 ~~~~~~ 213 (262)
T cd04255 208 AELLKK 213 (262)
T ss_pred HHHHHH
Confidence 665444
No 80
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.24 E-value=2.8e-11 Score=111.53 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=65.7
Q ss_pred CcccccC-CceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCHHH
Q 017776 1 MRERLDG-GCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE 68 (366)
Q Consensus 1 i~~ll~~-g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~~~ 68 (366)
|+.+++. |.|||+++ ++.++.|++.++ ++|.+|+.+|.+|+|++|+|+||++|+. ++++++++++.+|
T Consensus 105 l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e 184 (227)
T cd04234 105 LKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDE 184 (227)
T ss_pred HHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHH
Confidence 3567888 99999999 888999999888 6999999999999999999999999652 2578999999999
Q ss_pred HHHHHHH
Q 017776 69 ADSLIRQ 75 (366)
Q Consensus 69 ~~~l~~~ 75 (366)
++++...
T Consensus 185 ~~~l~~~ 191 (227)
T cd04234 185 ALELAYF 191 (227)
T ss_pred HHHHHhC
Confidence 9888643
No 81
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.24 E-value=2.8e-10 Score=108.30 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=92.8
Q ss_pred cceEEeCcc-cCHHHHHHHHHHHHHcCcC-ccCCHHHHHhc-------cCcEEEEEE--CCEEEEEEEEeeec-CCCeEE
Q 017776 205 YEGTRTAKV-TDLSGIKQIIQPLVESGAL-VRRTDEELLKA-------LDSFYVVER--EGQIIACAALFPFF-KEKCGE 272 (366)
Q Consensus 205 ~~~iR~a~~-~Di~~i~~L~~~~~~~~~~-~~~~~e~l~~~-------~~~~~v~~~--dg~iVG~~~l~~~~-~~~~~~ 272 (366)
-+++|+++. .|.+.+.++.+..+..... ..|+.+.+... -..++++.. ++++||++.+.... ....++
T Consensus 149 g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~ 228 (292)
T TIGR03448 149 GVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGE 228 (292)
T ss_pred CeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeE
Confidence 478899864 5888888887665543321 34555554432 123566665 68999997655332 223567
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 273 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 273 L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
|..++|+|+|||+|+|++|+..+++++++.|+..+.+.+ ..+.+||+|+||+..+..
T Consensus 229 i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 229 VYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 878899999999999999999999999999999988877 478999999999987643
No 82
>PRK10562 putative acetyltransferase; Provisional
Probab=99.24 E-value=1.3e-10 Score=99.17 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=79.9
Q ss_pred EEeCcccCHHHHHHHHHHHHHc--CcCcc--C--CHHHHHh---ccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEE
Q 017776 208 TRTAKVTDLSGIKQIIQPLVES--GALVR--R--TDEELLK---ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 278 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~--~~~~~--~--~~e~l~~---~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V 278 (366)
||+++.+|++.+.+++...... .+... + ....+.+ ....++++..++++||++.+... .++..++|
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~v 76 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-----RFVGALFV 76 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-----cEEEEEEE
Confidence 7999999999999998654221 11100 0 0111111 11246777788999999988632 36888999
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 279 ~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
+|+|||+|+|++|++++++.+ ..+.+.+ ..+.+||+|+||+.++..
T Consensus 77 ~~~~rg~G~g~~ll~~~~~~~-----~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 77 APKAVRRGIGKALMQHVQQRY-----PHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred CHHHcCCCHHHHHHHHHHhhC-----CeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 999999999999999998854 3444444 589999999999998865
No 83
>PRK01346 hypothetical protein; Provisional
Probab=99.24 E-value=1e-10 Score=116.99 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=94.5
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhc--cCcEEEEEECCEEEEEEEEeeec-----C--CCeEEEE
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA--LDSFYVVEREGQIIACAALFPFF-----K--EKCGEVA 274 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~--~~~~~v~~~dg~iVG~~~l~~~~-----~--~~~~~L~ 274 (366)
+.+.||+++.+|++++.++....+.... .....+.+... ....++++++++++|++.+.++. . ....+|.
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~ 83 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATGFGDSP-SDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVT 83 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEE
Confidence 3468999999999999999876654322 11122222221 23567888899999999987532 1 1468999
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEecc
Q 017776 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 328 (366)
Q Consensus 275 ~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~ 328 (366)
.++|+|+|||+|+|++||+++++.++++|+..+.+.+. ...||+|+||.....
T Consensus 84 ~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~-~~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 84 AVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTAS-EGGIYGRFGYGPATY 136 (411)
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECC-chhhHhhCCCeeccc
Confidence 99999999999999999999999999999988877763 358999999998753
No 84
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.22 E-value=1.3e-10 Score=99.61 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=91.1
Q ss_pred eEEeCcccCHHHHHHHHHHHHHcCcC--cc-CCHHH---HHhcc-----CcEEEEEECCEEEEEEEEeeecC-CCeEEEE
Q 017776 207 GTRTAKVTDLSGIKQIIQPLVESGAL--VR-RTDEE---LLKAL-----DSFYVVEREGQIIACAALFPFFK-EKCGEVA 274 (366)
Q Consensus 207 ~iR~a~~~Di~~i~~L~~~~~~~~~~--~~-~~~e~---l~~~~-----~~~~v~~~dg~iVG~~~l~~~~~-~~~~~L~ 274 (366)
.+|+++++|.+.+.++..+.....+. .+ .+.+. +.... ..++++..+|++||++.+..... ....+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g 81 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWG 81 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEE
Confidence 48999999999999998654433322 11 22222 11111 24677888999999999986442 3466775
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHH-cCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 275 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 275 ~l~V~p~~RgqGiG~~Ll~~l~~~a~~-~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
+++.|.+| +|+|++++..+++++.+ .+++.+.+.+ ..+++||+|+||+..+..
T Consensus 82 -~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~ 139 (156)
T TIGR03585 82 -IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred -EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeee
Confidence 55999999 99999999999999974 6999998877 589999999999998854
No 85
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.21 E-value=1.3e-10 Score=96.01 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=98.5
Q ss_pred ceEEeCcccCHHH-HHHHHHHHHHcCcCccCCHHHHHh----ccC-c-EEEEEE--CCEEEEEEEEeee-----cCCCeE
Q 017776 206 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLK----ALD-S-FYVVER--EGQIIACAALFPF-----FKEKCG 271 (366)
Q Consensus 206 ~~iR~a~~~Di~~-i~~L~~~~~~~~~~~~~~~e~l~~----~~~-~-~~v~~~--dg~iVG~~~l~~~-----~~~~~~ 271 (366)
+.+|++..+|+.. ..++..++...+...+..++.... ... + ..|+++ .++++|.+.+... .-...+
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rG 86 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSRG 86 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccccC
Confidence 6899999999996 899998888877764433222222 222 2 334443 3789999998752 224678
Q ss_pred EEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 272 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 272 ~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
+|..++|+++|||+++|+.|+..+...++..|+-.+.|.| +....||+|+||...+..
T Consensus 87 hiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~~ 145 (150)
T KOG3396|consen 87 HIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGNE 145 (150)
T ss_pred ceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccchh
Confidence 9999999999999999999999999999999999999999 688999999999987643
No 86
>PHA01807 hypothetical protein
Probab=99.19 E-value=3.1e-10 Score=98.14 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=80.6
Q ss_pred eCcccCHHHHHHHHHHHHHcCcCc-cCC--H---HHHHh----ccCcEEEEEECCEEEEEEEEeeecCCCeEE---EEEE
Q 017776 210 TAKVTDLSGIKQIIQPLVESGALV-RRT--D---EELLK----ALDSFYVVEREGQIIACAALFPFFKEKCGE---VAAI 276 (366)
Q Consensus 210 ~a~~~Di~~i~~L~~~~~~~~~~~-~~~--~---e~l~~----~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~---L~~l 276 (366)
.+..+|+..+..+......+.... +|. . ..+.. .....++++.+++++|++.+.........+ +..+
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 356788888888876654433211 111 1 12222 112357777899999999987544333334 4457
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhC
Q 017776 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 321 (366)
Q Consensus 277 ~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~kl 321 (366)
+|+|+|||+|+|++||+.+++++++.|+..+.+.+ .++.+||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 99999999999999999999999999999998888 4899999983
No 87
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.18 E-value=6.6e-10 Score=99.39 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=90.1
Q ss_pred cceEEeCcccCHHHHHHHHHHHH--HcCcCccC-----CH-------HHHHhc---c-CcEEEEEE--CCEEEEEEEEee
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLV--ESGALVRR-----TD-------EELLKA---L-DSFYVVER--EGQIIACAALFP 264 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~--~~~~~~~~-----~~-------e~l~~~---~-~~~~v~~~--dg~iVG~~~l~~ 264 (366)
.+.||+++++|.+.+.+++.+.. ...+.... .. ..+... - ...+++.. ++++||++.+..
T Consensus 17 rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~ 96 (194)
T PRK10809 17 RLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSN 96 (194)
T ss_pred cEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEe
Confidence 47899999999999999987632 11222111 01 111111 1 12344432 679999999975
Q ss_pred ecC--CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-cCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 265 FFK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 265 ~~~--~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~-~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
... ...+++ .++|+|+|||+|+|+.+++.+++++.+ .|++++.+.+ .+|.++|+|+||+..+..
T Consensus 97 ~~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 97 VVRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred ecCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 432 134677 488999999999999999999999976 6999999988 589999999999988753
No 88
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.17 E-value=4.1e-10 Score=107.11 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=86.1
Q ss_pred EeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc-------CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccC
Q 017776 209 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 209 R~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~-------~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~ 281 (366)
.+++++|++++.+|...........+++.+.. ..+ ...+++..++++||++.+.+... ...++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPARG-TDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCCC-CcceEEEEEECHh
Confidence 36788999999999987666544445554433 322 23677778899999999885432 3468999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecc
Q 017776 282 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 282 ~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~ 328 (366)
|||+|+|++||+++++.+. ..+.+.+ ..+++||+++||+....
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred hcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 9999999999999999864 2344444 47899999999998753
No 89
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.16 E-value=1.6e-10 Score=110.27 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=68.1
Q ss_pred cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCe
Q 017776 246 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 324 (366)
Q Consensus 246 ~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~ 324 (366)
.+++.++++++|||+.+.. .+|..++|+|+|||+|+|++||+++++++++.|+..+++.+ +.+..||+|+||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~ 80 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFK 80 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCE
Confidence 3666777899999998862 26899999999999999999999999999999999999998 4678999999999
Q ss_pred Eec
Q 017776 325 ECS 327 (366)
Q Consensus 325 ~~g 327 (366)
..+
T Consensus 81 ~~~ 83 (297)
T cd02169 81 ELA 83 (297)
T ss_pred Eec
Confidence 888
No 90
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.16 E-value=8.2e-10 Score=92.84 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=86.3
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCc---Ccc-CCHHHHHhcc-----------CcEEEEEE-C-CEEEEEEEEeee-cC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGA---LVR-RTDEELLKAL-----------DSFYVVER-E-GQIIACAALFPF-FK 267 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~---~~~-~~~e~l~~~~-----------~~~~v~~~-d-g~iVG~~~l~~~-~~ 267 (366)
++||+++++|++.+.++.+......+ ..+ .+.+.....+ ..+|++.. + +++||++.+... ..
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 57999999999999999853322222 111 1433322211 12344443 3 479999999533 45
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH-HHcCCCEEEEEe----HHHHHHHHhCCCe
Q 017776 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFR 324 (366)
Q Consensus 268 ~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a-~~~g~~~v~l~t----~~a~~~Y~klGF~ 324 (366)
...++++ +.|.|+|||+|+|+.++..+++++ ...++.++.+.+ .++.++++|+||+
T Consensus 82 ~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 6889996 899999999999999999999999 688999999888 5899999999996
No 91
>PRK13688 hypothetical protein; Provisional
Probab=99.13 E-value=2.6e-10 Score=99.07 Aligned_cols=108 Identities=18% Similarity=0.350 Sum_probs=78.1
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeeec---------CCCeEEEEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAA 275 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~---------~~~~~~L~~ 275 (366)
+..||++..+|++++.++....+... ....++++..+++++|++.+.... ....++|..
T Consensus 17 ~~~~~~~~~~dl~~l~~l~~~~f~~~------------~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~ 84 (156)
T PRK13688 17 FKKFREFGNQELSMLEELQANIIEND------------SESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWK 84 (156)
T ss_pred HHHHHHhcHHHHHHHHhhhhhEeecC------------CCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEE
Confidence 44578888888888888854333111 123567788899999998774321 235679999
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 276 l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
++|+|+|||||+|++|++++.+ .++. +.+.. +.+.+||+|+||+.++..
T Consensus 85 l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 85 LEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 9999999999999999986543 3443 33333 578899999999998765
No 92
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.12 E-value=2e-10 Score=106.01 Aligned_cols=66 Identities=21% Similarity=0.122 Sum_probs=54.6
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~~l 72 (366)
+.+|+.|.|||+++.. |..+ .++|.+|+.+|.+|+|++|+|+|||+|+ + +++++|++++.+++.++
T Consensus 112 ~~~l~~g~ipVi~g~~----g~~~-~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~ 184 (229)
T cd04239 112 IRHLEKGRIVIFGGGT----GNPG-FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK 184 (229)
T ss_pred HHHHhCCCEEEEeCcc----CCCC-CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHH
Confidence 5678999999999665 4443 5899999999999999999999999965 2 24789999998776655
No 93
>PRK08210 aspartate kinase I; Reviewed
Probab=99.07 E-value=4.6e-10 Score=112.10 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=67.0
Q ss_pred cccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~~~~~ 70 (366)
+.+|+.|.|||+++. |.+..|+++|+ ++|.+|+.+|.+|+|++++|+|||+|+. +++++|++|+.+|+.
T Consensus 127 ~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~ 206 (403)
T PRK08210 127 LEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVF 206 (403)
T ss_pred HHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHH
Confidence 467899999999998 88999999999 6999999999999999999999999652 368999999999999
Q ss_pred HHHHHh
Q 017776 71 SLIRQR 76 (366)
Q Consensus 71 ~l~~~~ 76 (366)
++...|
T Consensus 207 ~l~~~G 212 (403)
T PRK08210 207 QMAYQG 212 (403)
T ss_pred HHHHCC
Confidence 987543
No 94
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.05 E-value=4.3e-09 Score=102.07 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=71.5
Q ss_pred ccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhC
Q 017776 243 ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSR 321 (366)
Q Consensus 243 ~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~kl 321 (366)
..+.++++++++++|||+.+.. ..|.+++|+|+|||+|+|++||.++++.+++.|+..+++.| +...+||+++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEYC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHc
Confidence 4467788888999999999862 25889999999999999999999999999999999999999 4567899999
Q ss_pred CCeEeccc
Q 017776 322 GFRECSIE 329 (366)
Q Consensus 322 GF~~~g~~ 329 (366)
||.+....
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99998753
No 95
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.05 E-value=6.4e-10 Score=102.76 Aligned_cols=63 Identities=25% Similarity=0.180 Sum_probs=51.0
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEA 69 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~ 69 (366)
+++|++|.|||+++-. |.. ..++|.+|+.+|.+|+|++|+|+|||+|+ + +++++|++++.+++
T Consensus 114 ~~~l~~g~vPVv~g~~----~~~-~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~ 183 (231)
T PRK00358 114 IRHLEKGRVVIFAAGT----GNP-FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEV 183 (231)
T ss_pred HHHHHCCCEEEEECCC----CCC-CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHH
Confidence 4689999999997521 322 35899999999999999999999999965 2 36899999987763
No 96
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.05 E-value=8.5e-10 Score=105.64 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=65.7
Q ss_pred ccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHH
Q 017776 3 ERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 71 (366)
Q Consensus 3 ~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~ 71 (366)
.+++.|.|||+++ +|.+..|++.++ |+|..|+.+|.+|+|++|+++|||+|+ | ++.+++++|+.+|+.+
T Consensus 179 ~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~e 258 (298)
T cd04244 179 PMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAME 258 (298)
T ss_pred HHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHH
Confidence 4678899999999 699999999999 999999999999999999999999965 2 2588999999999999
Q ss_pred HHHH
Q 017776 72 LIRQ 75 (366)
Q Consensus 72 l~~~ 75 (366)
+...
T Consensus 259 l~~~ 262 (298)
T cd04244 259 LAYF 262 (298)
T ss_pred HHhC
Confidence 9743
No 97
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.02 E-value=1.3e-09 Score=99.94 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=85.6
Q ss_pred ccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHHHHHHH
Q 017776 3 ERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 3 ~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~~l~~~ 75 (366)
++|+.|.|||+.- .. -++++|++|+.+|.+|+|++|+|+|||+++ + +++++|++++.+++.++..+
T Consensus 98 ~~l~~g~ipv~~G--~~-----~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~ 170 (221)
T TIGR02076 98 EAMSLGKIVVMGG--TH-----PGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGS 170 (221)
T ss_pred HHHHcCCEEEEcC--CC-----CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcC
Confidence 4577888999874 22 247999999999999999999999999955 2 35799999998887776532
Q ss_pred hhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhcc
Q 017776 76 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 155 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (366)
+. ++.|.+
T Consensus 171 ~~----------------------------------------------------~~~g~~-------------------- 178 (221)
T TIGR02076 171 SS----------------------------------------------------VKAGSN-------------------- 178 (221)
T ss_pred CC----------------------------------------------------ccCCCC--------------------
Confidence 11 001111
Q ss_pred ccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 156 ~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
|..++.++..+.+.|++ ++|+++..++.+. .++.....||.|
T Consensus 179 -~~~~~~a~~~~~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i 220 (221)
T TIGR02076 179 -EVVDPLAAKIIERSKIR-TIVVNGRDPENLE-KVLKGEHVGTII 220 (221)
T ss_pred -ceeHHHHHHHHHHCCCc-EEEECCCCccHHH-HHHCCCCCCeEe
Confidence 55567777777777876 9999999998755 456666678876
No 98
>PRK06635 aspartate kinase; Reviewed
Probab=98.99 E-value=1.4e-09 Score=108.53 Aligned_cols=74 Identities=26% Similarity=0.314 Sum_probs=66.3
Q ss_pred CcccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHH
Q 017776 1 MRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEA 69 (366)
Q Consensus 1 i~~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~ 69 (366)
|+.+|+.|.|||+++ +|.++.|++.++ |+|.+|+.+|.+|+|++|+|+|||+|+ | ++++++++++.+|+
T Consensus 121 l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~ 200 (404)
T PRK06635 121 IREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEM 200 (404)
T ss_pred HHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHH
Confidence 356889999999999 699999999999 999999999999999999999999965 2 35789999999999
Q ss_pred HHHHH
Q 017776 70 DSLIR 74 (366)
Q Consensus 70 ~~l~~ 74 (366)
.++..
T Consensus 201 ~~l~~ 205 (404)
T PRK06635 201 LELAS 205 (404)
T ss_pred HHHHH
Confidence 88864
No 99
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.98 E-value=1.7e-09 Score=100.09 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=94.7
Q ss_pred CcccccCCceEEEcCcccC--------CCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc--c---cCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNLGYS--------SSGEVLNCNTYEVATACALAIEADKLICIIDGPIL--D---ESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~--------~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~--~---~~~~~i~~l~~~ 67 (366)
|+.|+++|.+||.+--|-. -.|---.||.|.+++.||..++||-||+|||++.+ + ++.+.+.+++++
T Consensus 177 Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gkp~q~~L~~v~~~ 256 (312)
T COG0549 177 IKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQALDRVTVD 256 (312)
T ss_pred HHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCCccchhhcccCHH
Confidence 5789999999988854432 23667789999999999999999999999999933 3 678899999999
Q ss_pred HHHHHHHHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCccccccccccc
Q 017776 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (366)
++++++.++. |+.|+
T Consensus 257 e~~~yl~eg~-----------------------------------------------------------------Fa~GS 271 (312)
T COG0549 257 EMEKYLAEGQ-----------------------------------------------------------------FAAGS 271 (312)
T ss_pred HHHHHHhcCC-----------------------------------------------------------------CCCCC
Confidence 9999997754 45555
Q ss_pred chhhhhccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
|.+|+++|+.....+-+++.|.+-.. +.+.+ ....||.|.
T Consensus 272 ---------M~PKVeAai~Fv~~~gk~A~ItsLe~----~~~~l-~g~~GT~I~ 311 (312)
T COG0549 272 ---------MGPKVEAAISFVENTGKPAIITSLEN----AEAAL-EGKAGTVIV 311 (312)
T ss_pred ---------ccHHHHHHHHHHHcCCCceEECcHHH----HHHHh-ccCCCcEec
Confidence 99999999999999878777754222 22222 345677764
No 100
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=98.98 E-value=2e-09 Score=108.73 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=66.0
Q ss_pred cccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccc-------cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~~-------~~~~~i~~l~~~~~~ 70 (366)
+.+|+.|.|||+++ +|.++.|++.++ |+|.+|+.+|.+|+|++|+|+|||+|+. ++.+++++|+.+|+.
T Consensus 162 ~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~ 241 (441)
T TIGR00657 162 EPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEML 241 (441)
T ss_pred HHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHH
Confidence 56788999999999 688999999998 8999999999999999999999999652 257899999999999
Q ss_pred HHHHH
Q 017776 71 SLIRQ 75 (366)
Q Consensus 71 ~l~~~ 75 (366)
++...
T Consensus 242 el~~~ 246 (441)
T TIGR00657 242 ELASF 246 (441)
T ss_pred HHHhc
Confidence 98743
No 101
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=98.95 E-value=2.9e-09 Score=97.77 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=87.0
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~~l~~ 74 (366)
..+|+.|.|||+.-.- + ++.+|.+|+.+|.+|+|++|+|+|||+|+ + +++++|++++.+++.++..
T Consensus 97 ~~~l~~g~vpv~~G~~--~-----~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~ 169 (221)
T cd04253 97 LEAMFTGKIVVMGGTE--P-----GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVG 169 (221)
T ss_pred HHHHHcCCeEEEECCC--C-----CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHcc
Confidence 3578899999998532 1 46889999999999999999999999965 2 3489999999888777642
Q ss_pred HhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhc
Q 017776 75 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 154 (366)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (366)
... +..|.+
T Consensus 170 ~~~----------------------------------------------------~~~g~~------------------- 178 (221)
T cd04253 170 KSS----------------------------------------------------WKAGSN------------------- 178 (221)
T ss_pred CCC----------------------------------------------------cCCCCC-------------------
Confidence 211 001101
Q ss_pred cccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCcccc
Q 017776 155 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 155 ~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi 200 (366)
+..++.++..+.+.|++ ++|+++..++. +.+++.....||.|
T Consensus 179 --~~~d~~a~~~~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I 220 (221)
T cd04253 179 --EPFDPLAAKIIERSGIK-TIVVDGRDPEN-LERALKGEFVGTII 220 (221)
T ss_pred --cchHHHHHHHHHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEe
Confidence 34566677778888987 89999998886 55677777788876
No 102
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=97.28 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=94.6
Q ss_pred CcccccCCceEEEcCcccCCCC-CeeecCHHHHHHHHHHHcCCCEEEEEecCcc-cccCCc-ccccCCHHHHHHHHHHhh
Q 017776 1 MRERLDGGCLVILSNLGYSSSG-EVLNCNTYEVATACALAIEADKLICIIDGPI-LDESGH-LIRFLTLQEADSLIRQRV 77 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~g~~~~g-~~~nin~D~~A~~~A~al~a~kLi~ltd~~~-~~~~~~-~i~~l~~~~~~~l~~~~~ 77 (366)
|+++|+.|+|||+.-.-+..++ -.--++.|+++..+|+.|+||+++|+|||+| ++.++. ++......+++....-+.
T Consensus 120 i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~g 199 (252)
T COG1608 120 IKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGG 199 (252)
T ss_pred HHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcC
Confidence 4578999999999985554443 6778999999999999999999999999994 566655 555445555555432111
Q ss_pred hhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhhcccc
Q 017776 78 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 157 (366)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (366)
++.++ .+|| |
T Consensus 200 -------------------------------s~~~D------------------------------VTGG---------i 209 (252)
T COG1608 200 -------------------------------SGGTD------------------------------VTGG---------I 209 (252)
T ss_pred -------------------------------cCccc------------------------------chhh---------H
Confidence 10011 2233 9
Q ss_pred HHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccc
Q 017776 158 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 158 ~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~ 201 (366)
..||+++.+..+.+.+ +.++++..++. +..++.....||.|.
T Consensus 210 ~~Kl~~~~~~~~~~~~-vyi~ng~~~~n-i~~~l~G~~vGT~I~ 251 (252)
T COG1608 210 AKKLEALLEIARYGKE-VYIFNGNKPEN-IYRALRGENVGTRID 251 (252)
T ss_pred HHHHHHHHHHHhcCce-EEEECCCCHHH-HHHHhcCCCCceEec
Confidence 9999999988888888 99999999987 445556777888764
No 103
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=98.95 E-value=2.6e-09 Score=106.54 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=66.9
Q ss_pred cccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~ 70 (366)
+.+++.|.|||+++ +|.+..|+..++ ++|.+|+.+|.+|+|++|+|+|||+|+ | ++.+++++|+.+|+.
T Consensus 123 ~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~ 202 (401)
T TIGR00656 123 LPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEAL 202 (401)
T ss_pred HHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHH
Confidence 46788999999999 799999999998 699999999999999999999999965 2 367899999999999
Q ss_pred HHHHHh
Q 017776 71 SLIRQR 76 (366)
Q Consensus 71 ~l~~~~ 76 (366)
++...|
T Consensus 203 ~l~~~G 208 (401)
T TIGR00656 203 ELATFG 208 (401)
T ss_pred HHHHcC
Confidence 997543
No 104
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=98.94 E-value=3.5e-09 Score=97.92 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=51.8
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~ 70 (366)
+.+|++|.|||++ | ..|.. .+++|.+|+.+|.+|+|++|+|+|||+++ + ++.+++++++.+++.
T Consensus 114 ~~~l~~g~ipV~~--g--~~G~~-~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~ 184 (231)
T cd04254 114 IRHLEKGRVVIFA--G--GTGNP-FFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVL 184 (231)
T ss_pred HHHHHCCCEEEEE--C--CcCCC-CCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHH
Confidence 5688999999999 2 23444 55899999999999999999999999955 2 257889999877653
No 105
>PRK06291 aspartate kinase; Provisional
Probab=98.90 E-value=6.2e-09 Score=105.78 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=64.8
Q ss_pred cccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~ 70 (366)
+.+++.|.|||+++ +|.++.|++.|+ ++|..|+.+|.+|+|++|+++|||+|+ | ++.+++++|+.+|+.
T Consensus 182 ~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~ 261 (465)
T PRK06291 182 EPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAM 261 (465)
T ss_pred HHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHH
Confidence 45788999999999 699999999999 999999999999999999999999965 2 368899999999988
Q ss_pred HHH
Q 017776 71 SLI 73 (366)
Q Consensus 71 ~l~ 73 (366)
++.
T Consensus 262 ~l~ 264 (465)
T PRK06291 262 ELS 264 (465)
T ss_pred HHH
Confidence 885
No 106
>PRK14558 pyrH uridylate kinase; Provisional
Probab=98.84 E-value=1.2e-08 Score=94.20 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=52.6
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 71 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~ 71 (366)
+.+|+.|.|||++... | .-.+++|.+|+.+|..|+|+.|+++|||+|+ | ++++++++++..|+.+
T Consensus 112 ~~ll~~g~vpV~~G~~----~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~ 183 (231)
T PRK14558 112 ELYFRAGYIVIFAGGT----S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIK 183 (231)
T ss_pred HHHHHCCCEEEEECCC----C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHH
Confidence 5688999999999642 2 3356789999999999999999999999965 2 3578999998766544
No 107
>PRK08841 aspartate kinase; Validated
Probab=98.83 E-value=1.3e-08 Score=101.04 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=65.8
Q ss_pred cccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~ 70 (366)
+++++.|.|||+++. |.++.|++.++ ++|..|+.+|.+|+|+.|+++|||+|+ | ++.+++++|+-+|+.
T Consensus 122 ~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ 201 (392)
T PRK08841 122 TELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSME 201 (392)
T ss_pred HHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHH
Confidence 467889999999995 88999999999 999999999999999999999999965 2 357899999999988
Q ss_pred HHHHH
Q 017776 71 SLIRQ 75 (366)
Q Consensus 71 ~l~~~ 75 (366)
++...
T Consensus 202 ela~~ 206 (392)
T PRK08841 202 AMARK 206 (392)
T ss_pred HHHhc
Confidence 88643
No 108
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.81 E-value=2.2e-08 Score=78.14 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=48.0
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEecc
Q 017776 271 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 271 ~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~ 328 (366)
++|..++|+|+|||+|+|+.++..+.+.+.+.|... ++.+ ..|+++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTP-FLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEE-EEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHcCCEEEEE
Confidence 789999999999999999999999999998888654 3444 58999999999998754
No 109
>PRK07431 aspartate kinase; Provisional
Probab=98.81 E-value=1.7e-08 Score=105.53 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=63.3
Q ss_pred CcccccCCceEEEcCc-ccC--CCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHH
Q 017776 1 MRERLDGGCLVILSNL-GYS--SSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQ 67 (366)
Q Consensus 1 i~~ll~~g~ipvi~~~-g~~--~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~ 67 (366)
|+++|+.|.|||+++. |.+ ..|++.++ ++|.+|+.+|.+|+|++|+|+|||+|+ | +++++|++|+.+
T Consensus 121 l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~ 200 (587)
T PRK07431 121 IQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCD 200 (587)
T ss_pred HHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHH
Confidence 3567899999999975 543 45888876 999999999999999999999999965 2 258899999999
Q ss_pred HHHHHHHH
Q 017776 68 EADSLIRQ 75 (366)
Q Consensus 68 ~~~~l~~~ 75 (366)
|+.++...
T Consensus 201 e~~el~~~ 208 (587)
T PRK07431 201 EMLELASL 208 (587)
T ss_pred HHHHHHhC
Confidence 99998643
No 110
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.81 E-value=4.1e-09 Score=89.28 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=87.9
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEE-ECCEEEEEEEEeeec----CCCeEEEEEEEEcc
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSP 280 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~-~dg~iVG~~~l~~~~----~~~~~~L~~l~V~p 280 (366)
+.||.++++|+-.+..+--....+.+......-....+...-||++ .+|+|||++...-.. ++..++|..++|..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 4689999988877666532222222222222222223334556776 789999999886433 34578999999999
Q ss_pred CCcCCcHHHHHHHHHHHHHH-HcCCCEEEEEe----HHHHHHHH-hCCCeEeccc
Q 017776 281 ECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT----TRTADWFK-SRGFRECSIE 329 (366)
Q Consensus 281 ~~RgqGiG~~Ll~~l~~~a~-~~g~~~v~l~t----~~a~~~Y~-klGF~~~g~~ 329 (366)
.||+.|+|++||....+... ..+.+.|.+.+ ..|.++|+ .+||++.+.+
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 99999999999999776664 34677888888 47899998 7999998865
No 111
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.80 E-value=4.2e-08 Score=85.79 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHHHHHc-----C--cCccCCHHHHHhccCcEEEEEECC-EEEEEEEEeeecCCC--eEEEEEEEEccCCc
Q 017776 214 TDLSGIKQIIQPLVES-----G--ALVRRTDEELLKALDSFYVVEREG-QIIACAALFPFFKEK--CGEVAAIGVSPECR 283 (366)
Q Consensus 214 ~Di~~i~~L~~~~~~~-----~--~~~~~~~e~l~~~~~~~~v~~~dg-~iVG~~~l~~~~~~~--~~~L~~l~V~p~~R 283 (366)
++++...+|+...... . |....-..++......++++..++ ++|||..+....+.+ ..++..+-|.+.||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 6777777777652221 1 222223445555556777777766 899999998655544 77888889999999
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 284 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 284 gqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
|+|||+.||+.++..+.....+.|.+.+ .++..||.++||......
T Consensus 134 ~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~s 183 (202)
T KOG2488|consen 134 GKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEES 183 (202)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCC
Confidence 9999999999999999888888777777 699999999999987644
No 112
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=98.80 E-value=2.1e-08 Score=92.81 Aligned_cols=64 Identities=23% Similarity=0.188 Sum_probs=51.2
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEec-Cccc-c------cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-D------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd-~~~~-~------~~~~~i~~l~~~~~~ 70 (366)
+.+|+.|.|||++.. .|. -.+++|.+|+.+|..|+||.|+|+|| |+++ + ++.+++++++.+++.
T Consensus 115 ~~ll~~g~VpV~~g~----~g~-~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~ 186 (233)
T TIGR02075 115 IKHLEKGKVVIFSGG----TGN-PFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEAL 186 (233)
T ss_pred HHHHHCCCEEEEECC----CCC-CCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHH
Confidence 468999999998732 122 36889999999999999999999999 9965 2 347889989877644
No 113
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=84.46 Aligned_cols=93 Identities=25% Similarity=0.334 Sum_probs=74.3
Q ss_pred HHHhccCcEEEEEECCEEEEEEEEeeecC-CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC-CCEEEEEe-HHHH
Q 017776 239 ELLKALDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTA 315 (366)
Q Consensus 239 ~l~~~~~~~~v~~~dg~iVG~~~l~~~~~-~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g-~~~v~l~t-~~a~ 315 (366)
++.....++++...+|++++|+.+.+... .....|+++.|+|++||+|+|++||..+++.+.+.. -+.+.+.. ...+
T Consensus 44 Dl~~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq 123 (155)
T COG2153 44 DLLGDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQ 123 (155)
T ss_pred ccccccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHH
Confidence 33345567888877999999999997432 233679999999999999999999999999997653 45566766 5789
Q ss_pred HHHHhCCCeEeccccc
Q 017776 316 DWFKSRGFRECSIEMI 331 (366)
Q Consensus 316 ~~Y~klGF~~~g~~~l 331 (366)
.||.++||+.++..++
T Consensus 124 ~fYa~~GFv~~~e~yl 139 (155)
T COG2153 124 DFYASFGFVRVGEEYL 139 (155)
T ss_pred HHHHHhCcEEcCchhh
Confidence 9999999999986543
No 114
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=81.31 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=84.9
Q ss_pred cCHHHHHHHHHHHHHcCcCccCC--HHHHHhccC-----cEEEEEECCEEEEEEEEeeecC-CCeEEEEEEEEccCCcCC
Q 017776 214 TDLSGIKQIIQPLVESGALVRRT--DEELLKALD-----SFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 214 ~Di~~i~~L~~~~~~~~~~~~~~--~e~l~~~~~-----~~~v~~~dg~iVG~~~l~~~~~-~~~~~L~~l~V~p~~Rgq 285 (366)
.|.+++.+--..+....|.-..+ ...+.+..+ ..+..+...+++|...+.+... ....++..++|+...||+
T Consensus 19 H~rPELlk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~ 98 (225)
T KOG3397|consen 19 HDRPELLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGL 98 (225)
T ss_pred cccHHHHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccc
Confidence 56666666555555555543322 112222222 1333455678999999987643 467899999999999999
Q ss_pred cHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEec
Q 017776 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECS 327 (366)
Q Consensus 286 GiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g 327 (366)
|+|+.||+.++.+++..|.+.+++.|..-.+||+++||+...
T Consensus 99 GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~lGYe~c~ 140 (225)
T KOG3397|consen 99 GFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESLGYEKCD 140 (225)
T ss_pred cHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhhcccccC
Confidence 999999999999999999999999997778999999999765
No 115
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.66 E-value=6.8e-08 Score=81.96 Aligned_cols=147 Identities=20% Similarity=0.145 Sum_probs=106.5
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEE-CCEEEEEEEEeee--cCCCeEEEEEEEEccCC
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPEC 282 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~-dg~iVG~~~l~~~--~~~~~~~L~~l~V~p~~ 282 (366)
.++|+.+.+|+-..-.+.-..-.+.+..+.....+..+-..+.+++. ++++.|++.-... .....+++..+.|.|+|
T Consensus 2 tt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~ 81 (173)
T KOG3234|consen 2 TTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDY 81 (173)
T ss_pred CccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhH
Confidence 35788888887776666555566677777777788777777777764 4678898876432 22356899999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccccccHHHHhhhc--CCCCceeEEeecCCCC
Q 017776 283 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRIN--LSRNSKYYMKKLLPDT 356 (366)
Q Consensus 283 RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~~lp~~~~~~y~--~~r~s~vl~k~L~~~~ 356 (366)
|+.|+|+.||..+++.....+...+.+.+ +-|+.+|+|+||..-...- ..|. ++.+..-|.|.|..|.
T Consensus 82 Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi------~YY~~g~deda~dMRKalSrD~ 155 (173)
T KOG3234|consen 82 RRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVI------EYYSVGPDEDAYDMRKALSRDV 155 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeee------eeeccCCCcchHhhhhhhccCc
Confidence 99999999999999999777666666666 5799999999999765320 1111 2344455556666665
Q ss_pred CC
Q 017776 357 SG 358 (366)
Q Consensus 357 ~~ 358 (366)
..
T Consensus 156 dk 157 (173)
T KOG3234|consen 156 DK 157 (173)
T ss_pred cc
Confidence 54
No 116
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.63 E-value=5e-08 Score=86.37 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=87.9
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeeecCC---------CeEEEEE
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKE---------KCGEVAA 275 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~---------~~~~L~~ 275 (366)
.+.++..++.++..+..|....+...+...+.++-+.. .+..-++..++..+|..++...... ...+|..
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~ 94 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILS 94 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEe
Confidence 47899999999999999977666555544432222221 1111122223444554444332111 1388999
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHcC-CCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 276 IGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 276 l~V~p~~RgqGiG~~Ll~~l~~~a~~~g-~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
+.|.|.||.+|+|+.|+.++.+.+.+.. ++.+++.+ ..+..||+++||+++...
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~ 153 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERL 153 (187)
T ss_pred ecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeecc
Confidence 9999999999999999999999998877 78888888 478999999999998753
No 117
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.62 E-value=2.3e-07 Score=85.54 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=64.9
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEE-EEEe--HHHHHHHHhCCCeEe
Q 017776 250 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML-FLLT--TRTADWFKSRGFREC 326 (366)
Q Consensus 250 ~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v-~l~t--~~a~~~Y~klGF~~~ 326 (366)
.+.+|+||..+.... ..+..+.|..++++|+|||||++++|+..+.+..-..|...+ ++.+ +.|.+.|+|+||+..
T Consensus 182 ~~~d~~iVa~A~t~a-~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riGF~~~ 260 (268)
T COG3393 182 LEGDGKIVAKAETAA-ENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIGFREI 260 (268)
T ss_pred EccCCcEEEeeeccc-cCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhCCeec
Confidence 344569999998874 345789999999999999999999999999999988886654 3423 689999999999998
Q ss_pred cc
Q 017776 327 SI 328 (366)
Q Consensus 327 g~ 328 (366)
|.
T Consensus 261 g~ 262 (268)
T COG3393 261 GE 262 (268)
T ss_pred ce
Confidence 84
No 118
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.56 E-value=4.7e-07 Score=63.76 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=53.9
Q ss_pred EEEEECCEEEEEEEEeeecC-CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEE
Q 017776 248 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 309 (366)
Q Consensus 248 ~v~~~dg~iVG~~~l~~~~~-~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l 309 (366)
+++..+++++|++.+.+... ....++..++|+|+|||+|+|++++..+++++.+.+++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45667899999999986432 467899999999999999999999999999999989988875
No 119
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.51 E-value=8.2e-07 Score=90.97 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=66.3
Q ss_pred cEEEEEE---CCEEEEEEEEeeecC-------CCeEEEEEEEE-----------ccCCcCCcHHHHHHHHHHHHHHHcCC
Q 017776 246 SFYVVER---EGQIIACAALFPFFK-------EKCGEVAAIGV-----------SPECRGQGQGDKLLDYIEKKAASLGL 304 (366)
Q Consensus 246 ~~~v~~~---dg~iVG~~~l~~~~~-------~~~~~L~~l~V-----------~p~~RgqGiG~~Ll~~l~~~a~~~g~ 304 (366)
..|+.+. ++.++|++.+....+ ...+.|..+.| +|+|||+|+|++||+++++.+++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 4555554 578999999985322 12445555553 59999999999999999999999999
Q ss_pred CEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 305 DMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 305 ~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
+.+.+.+ ..+.+||+|+||+..+..
T Consensus 492 ~~i~v~s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 492 EKILVISGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CEEEEeeCchHHHHHHHCCCEEEcce
Confidence 9999876 589999999999987654
No 120
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=98.47 E-value=9.9e-07 Score=85.35 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=59.4
Q ss_pred cccccCCceEEEcCcccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~~ 71 (366)
..+++.|.|||++....+.+|...++ ++|..|+.+|.+|+|+.++++|||+|+ + ++.+++++++.+|+.+
T Consensus 151 ~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~e 230 (327)
T TIGR02078 151 YEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKI 230 (327)
T ss_pred HHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHH
Confidence 35688999999998665778887775 799999999999999999999999965 2 2456899999988875
Q ss_pred H
Q 017776 72 L 72 (366)
Q Consensus 72 l 72 (366)
+
T Consensus 231 l 231 (327)
T TIGR02078 231 A 231 (327)
T ss_pred H
Confidence 5
No 121
>PRK08373 aspartate kinase; Validated
Probab=98.46 E-value=1e-06 Score=85.75 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=61.8
Q ss_pred cccccCCceEEEcCcccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~~~ 71 (366)
..+|+.|.|||++....+.+|++..+ ++|..|+.+|.+|+|++++|+|||+|+ + ++.+++++|+.+|+.+
T Consensus 161 ~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~e 240 (341)
T PRK08373 161 YELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALI 240 (341)
T ss_pred HHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHH
Confidence 45688999999998766778987775 899999999999999999999999965 2 2467999999999997
Q ss_pred HH
Q 017776 72 LI 73 (366)
Q Consensus 72 l~ 73 (366)
+.
T Consensus 241 la 242 (341)
T PRK08373 241 AA 242 (341)
T ss_pred HH
Confidence 64
No 122
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.2e-06 Score=74.64 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=66.1
Q ss_pred CEEEEEEEEeeec---CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH-HcCCCEEEEEe----HHHHHHHHhCCCeE
Q 017776 254 GQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT----TRTADWFKSRGFRE 325 (366)
Q Consensus 254 g~iVG~~~l~~~~---~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~-~~g~~~v~l~t----~~a~~~Y~klGF~~ 325 (366)
+++||.+.+.... ....++++ +.+.|+|+|+|+|+.++..+++++- ..+++++.+.| .++.++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIG-YWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEE-EEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 5899999999765 35677885 7779999999999999999999995 58999999988 58999999999999
Q ss_pred ecccc
Q 017776 326 CSIEM 330 (366)
Q Consensus 326 ~g~~~ 330 (366)
.+...
T Consensus 156 eg~~~ 160 (187)
T COG1670 156 EGELR 160 (187)
T ss_pred hhhhh
Confidence 88653
No 123
>PRK14557 pyrH uridylate kinase; Provisional
Probab=98.44 E-value=7.9e-07 Score=82.97 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=81.7
Q ss_pred ccccCCceEEEcCc-ccCCCCCeeecCHHHHHHHHHHHcCCCEEEEE-ecCccc---c----cCCcccccCCHHHHHHHH
Q 017776 3 ERLDGGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPIL---D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 3 ~ll~~g~ipvi~~~-g~~~~g~~~nin~D~~A~~~A~al~a~kLi~l-td~~~~---~----~~~~~i~~l~~~~~~~l~ 73 (366)
..|++|.|||++.- |. -.+.+|++|+.+|..++||.|+++ |||+|+ | +++++|++++..|+.
T Consensus 120 ~~l~~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~--- 190 (247)
T PRK14557 120 HHLDNGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV--- 190 (247)
T ss_pred HHHhCCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---
Confidence 34789999998763 32 345699999999999999999999 599965 2 357899999866542
Q ss_pred HHhhhhhHHHHhHHhhhhccccccccCCCCCCccccCCCCCccchhhhhhccCCCccCCCCCCcccccccccccchhhhh
Q 017776 74 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 153 (366)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
..+.+
T Consensus 191 ~~~~~--------------------------------------------------------------------------- 195 (247)
T PRK14557 191 RQNIQ--------------------------------------------------------------------------- 195 (247)
T ss_pred ccCHH---------------------------------------------------------------------------
Confidence 11110
Q ss_pred ccccHHHHHHHHHHHHcCCceEEeeccccCcchhhhhhhcCCCccccccCc
Q 017776 154 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 204 (366)
Q Consensus 154 ~~~~~~~l~~A~~al~~Gv~rv~iv~g~~~~~ll~elfs~~g~gTmi~~d~ 204 (366)
.| ...++..|...|++ ++|.++..++. +..++..+..||.|.+..
T Consensus 196 --~~--~~~A~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 196 --VM--DQAALLLARDYNLP-AHVFNFDEPGV-MRRICLGEHVGTLINDDA 240 (247)
T ss_pred --HH--HHHHHHHHHHCCCc-EEEEeCCCChH-HHHHHcCCCCcEEEecCc
Confidence 02 23356667788997 99999999986 445666777899997654
No 124
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.44 E-value=2.9e-06 Score=64.97 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=58.1
Q ss_pred EEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhC
Q 017776 249 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 321 (366)
Q Consensus 249 v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~kl 321 (366)
.+..+|+.+|++.+.. +++...|....|.|++||||+|+.|++.+++++++.|. +|...|+-+.++++|+
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~-kv~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGL-KVVPTCSYVAKYFRRH 72 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT--EEEETSHHHHHHHHH-
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC-EEEEECHHHHHHHHhC
Confidence 3455688999999874 56889999999999999999999999999999999876 5567788888998875
No 125
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.41 E-value=3.1e-06 Score=73.25 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=70.5
Q ss_pred cEEEEEECCEEEEEEEEeeecC----CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHH
Q 017776 246 SFYVVEREGQIIACAALFPFFK----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADW 317 (366)
Q Consensus 246 ~~~v~~~dg~iVG~~~l~~~~~----~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~ 317 (366)
.+|....|+++||++.+...-+ ...++|+ ..|.|+.||+|+|+++++.+++.|+++|++.|.+.| .+|.+.
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkv 148 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKV 148 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHH
Confidence 4666667899999999985432 2467895 899999999999999999999999999999999998 488999
Q ss_pred HHhCCCeEeccc
Q 017776 318 FKSRGFRECSIE 329 (366)
Q Consensus 318 Y~klGF~~~g~~ 329 (366)
-+++|=......
T Consensus 149 I~~NGGile~~~ 160 (174)
T COG3981 149 IEANGGILENEF 160 (174)
T ss_pred HHhcCCEEeEEE
Confidence 999998776643
No 126
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.35 E-value=1.2e-06 Score=72.12 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=94.2
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHHc-CcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeee----cC----------C
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALDSFYVVEREGQIIACAALFPF----FK----------E 268 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~~-~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~----~~----------~ 268 (366)
+.+.++.....|..+++.|.+....+ .|+ ..+.+..-....|++..+|.+.|+...+.. .+ +
T Consensus 6 mp~~~~D~~apd~aavLaLNNeha~elswL---e~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe 82 (167)
T COG3818 6 MPILIRDVRAPDLAAVLALNNEHALELSWL---ELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYE 82 (167)
T ss_pred cceehhhhcCCchhhHHhccchhhhhcccc---CHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCC
Confidence 34556677777888888887654222 222 344444444444577777777766554321 11 3
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe------HHHHHHHHhCCCeEeccccccHH
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIEMIPEE 334 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t------~~a~~~Y~klGF~~~g~~~lp~~ 334 (366)
+..+++++.|....||+|+|++|...+.+.++..|+..+.+++ +.+..|...+||.++|...+...
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihgg 154 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGG 154 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecc
Confidence 6789999999999999999999999999999999999998888 46788889999999998877644
No 127
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=98.34 E-value=2.8e-06 Score=81.30 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=59.1
Q ss_pred CceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHHH
Q 017776 8 GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 8 g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~~ 75 (366)
+.|||++.. |.++.|++.-+ .+|..|+.+|.+|+|++|+++|||+|+ | ++.+++++|+.+|+.++...
T Consensus 181 ~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~ 259 (295)
T cd04259 181 AQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATM 259 (295)
T ss_pred CceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHc
Confidence 579999975 88899988764 899999999999999999999999965 2 35789999999999999754
No 128
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.31 E-value=1.2e-05 Score=75.03 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=89.5
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEEC-CEEEEEEEEeeecCCCeEEEEEEEEccCCc
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~d-g~iVG~~~l~~~~~~~~~~L~~l~V~p~~R 283 (366)
++.++.+.+.|...+..+-.-+...... +..+++.+.++..+ +++++|.++.- .-|.|++|+|.+|
T Consensus 3 ~~~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~q 69 (352)
T COG3053 3 NYTFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQ 69 (352)
T ss_pred ceEEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhcc
Confidence 4567788888888777776655555543 22345566655554 99999998872 2588999999999
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEecc
Q 017776 284 GQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 284 gqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~ 328 (366)
|-|+.-+|+.++.+.+.++|...+++.| +....||+.+||.++..
T Consensus 70 GeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~~ 115 (352)
T COG3053 70 GEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIAS 115 (352)
T ss_pred cccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEeec
Confidence 9999999999999999999999999999 78899999999998753
No 129
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=98.30 E-value=3.2e-06 Score=80.81 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=62.2
Q ss_pred ccccC-CceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHH
Q 017776 3 ERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 3 ~ll~~-g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~ 70 (366)
.++.. +.|||+... |.++.|++..+ .+|..|+.+|.+|+|++++++|||+|+ | ++.+++++|+.+|+.
T Consensus 173 ~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~ 252 (293)
T cd04243 173 QLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAM 252 (293)
T ss_pred HHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHH
Confidence 34444 889999975 88899999976 489999999999999999999999965 2 357899999999999
Q ss_pred HHHHHh
Q 017776 71 SLIRQR 76 (366)
Q Consensus 71 ~l~~~~ 76 (366)
++...|
T Consensus 253 ~l~~~G 258 (293)
T cd04243 253 ELAYFG 258 (293)
T ss_pred HHHhCC
Confidence 987543
No 130
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.29 E-value=1.7e-05 Score=71.11 Aligned_cols=103 Identities=21% Similarity=0.311 Sum_probs=66.0
Q ss_pred CcEEEEEECC--EEEEEEEEeeecC------------------------------------CCeEEEEEEEEccCCcCCc
Q 017776 245 DSFYVVEREG--QIIACAALFPFFK------------------------------------EKCGEVAAIGVSPECRGQG 286 (366)
Q Consensus 245 ~~~~v~~~dg--~iVG~~~l~~~~~------------------------------------~~~~~L~~l~V~p~~RgqG 286 (366)
+.+|+...++ +++|++.+..... -....|-+|+|+|++|++|
T Consensus 27 h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G 106 (196)
T PF13718_consen 27 HRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRMG 106 (196)
T ss_dssp EEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSS
T ss_pred ceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcCC
Confidence 4688888888 9999988853110 0457799999999999999
Q ss_pred HHHHHHHHHHHHH-------------------------HHcCCCEEE---EEeHHHHHHHHhCCCeEeccccccHHHHhh
Q 017776 287 QGDKLLDYIEKKA-------------------------ASLGLDMLF---LLTTRTADWFKSRGFRECSIEMIPEERRKR 338 (366)
Q Consensus 287 iG~~Ll~~l~~~a-------------------------~~~g~~~v~---l~t~~a~~~Y~klGF~~~g~~~lp~~~~~~ 338 (366)
+|+++++.+++++ +..++..+- -.|..-.+|+.|+||.++....-+...
T Consensus 107 ~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~~--- 183 (196)
T PF13718_consen 107 YGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNEA--- 183 (196)
T ss_dssp HHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--TT---
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCcccc---
Confidence 9999999999999 355666542 233577899999999998765443221
Q ss_pred hcCCCCceeEEeec
Q 017776 339 INLSRNSKYYMKKL 352 (366)
Q Consensus 339 y~~~r~s~vl~k~L 352 (366)
....|.+|+|.|
T Consensus 184 --SGe~S~imlr~l 195 (196)
T PF13718_consen 184 --SGEHSAIMLRPL 195 (196)
T ss_dssp --T---EEEEEEE-
T ss_pred --cCceeeeEEeec
Confidence 236678888765
No 131
>PRK14556 pyrH uridylate kinase; Provisional
Probab=98.25 E-value=3.8e-06 Score=78.05 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=47.1
Q ss_pred cccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc-c------cCCcccccCCHHHH
Q 017776 2 RERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-D------ESGHLIRFLTLQEA 69 (366)
Q Consensus 2 ~~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~-~------~~~~~i~~l~~~~~ 69 (366)
.+.|+.|.|||++.- . | .=.+.+|++|+.+|..++||.|+++|||+|+ + ++.+++++++..++
T Consensus 130 ~~~l~~g~vvi~~gg-~---G-~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~ 199 (249)
T PRK14556 130 NQELAKGRVLIFAGG-T---G-NPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEV 199 (249)
T ss_pred HHHHhCCCEEEEECC-C---C-CCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhh
Confidence 356889999997652 1 2 2245579999999999999999999999965 2 24567777766553
No 132
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=98.03 E-value=3.4e-05 Score=67.83 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=82.7
Q ss_pred hhhhhhhcCCCccccccCccceEE-eCccc-CHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEe
Q 017776 186 LLLELFKRDGMGTMVASDLYEGTR-TAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 263 (366)
Q Consensus 186 ll~elfs~~g~gTmi~~d~~~~iR-~a~~~-Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~ 263 (366)
|.+|||++.|.||+|.++..+... ....- |.+.+.+++.+.+......+...+.+.......|+. +..-|++.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~d---~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYVD---EDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEEE---TTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEEe---CCceEEEEEE
Confidence 678999999999999998664444 33344 899999998877744444444455554444444443 2333444444
Q ss_pred e---ecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe---HHHHHHHHh--CCCeE
Q 017776 264 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFKS--RGFRE 325 (366)
Q Consensus 264 ~---~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t---~~a~~~Y~k--lGF~~ 325 (366)
+ ......++|+.|+|.|..||.|++..++..+.+... .++-.+ .+..+||-+ -|+-.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p-----~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDFP-----KLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-S-----SEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhcc-----ceEEEecCCCCcccEEEEeeEEEEE
Confidence 3 233469999999999999999999999999876653 233333 466777733 46654
No 133
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=98.02 E-value=3.1e-05 Score=74.16 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=57.6
Q ss_pred CceEEEcCc-ccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHH
Q 017776 8 GCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 8 g~ipvi~~~-g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~ 74 (366)
+.|||+... |.+..|++-.+- +|..|+.+|.+|+|+.|+++||++|+ | ++.+.+++++-+|+.++..
T Consensus 180 ~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~ 257 (294)
T cd04257 180 GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSY 257 (294)
T ss_pred CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh
Confidence 889999975 778889988654 89999999999999999999999855 2 3578999999999988863
No 134
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.95 E-value=0.00033 Score=58.12 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=66.9
Q ss_pred CcccCHHHHHHHHHHHHHcCcCccCCHHHHH---hccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcH
Q 017776 211 AKVTDLSGIKQIIQPLVESGALVRRTDEELL---KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQ 287 (366)
Q Consensus 211 a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~---~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGi 287 (366)
++..|.-++.+++ ...+.+.+. +....+|++.-|++++|.+.+.. ++..+.|..+.|.+-=|++|+
T Consensus 10 ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRrRGV 78 (128)
T PF12568_consen 10 LSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRRRGV 78 (128)
T ss_dssp --HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SSSSH
T ss_pred CCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeeccccccH
Confidence 3455566666665 112233333 33457999999999999999985 347999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEe--------HHHHHHHHhCCCeEec
Q 017776 288 GDKLLDYIEKKAASLGLDMLFLLT--------TRTADWFKSRGFRECS 327 (366)
Q Consensus 288 G~~Ll~~l~~~a~~~g~~~v~l~t--------~~a~~~Y~klGF~~~g 327 (366)
|+.|++.+.+.+. .++...+.. .....|...+||...+
T Consensus 79 G~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 79 GLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred HHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 9999999999884 455555544 2345889999997643
No 135
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.92 E-value=0.00029 Score=66.28 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=63.8
Q ss_pred CHHHHHhccCcEEEEEECCEEEEEE-EEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HH
Q 017776 236 TDEELLKALDSFYVVEREGQIIACA-ALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TR 313 (366)
Q Consensus 236 ~~e~l~~~~~~~~v~~~dg~iVG~~-~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~ 313 (366)
+.+++... ..-|++.+++++|+-| +...+ ++..+| .|.++|+|||||+|+.+...++..|.++|+.-.+-.. ..
T Consensus 157 s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~~~~--~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~ 232 (265)
T PF12746_consen 157 SYEDFLKN-GFGFCILHDGEIVSGCSSYFVY--ENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLA 232 (265)
T ss_dssp SHHHHHHH---EEEEEETTEEEEEEEEEEEE--TTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHH
T ss_pred CHHHHHhc-CcEEEEEECCEEEEEEEEEEEE--CCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHH
Confidence 45555444 3445666788887644 44433 367899 5999999999999999999999999999987765433 68
Q ss_pred HHHHHHhCCCeEeccc
Q 017776 314 TADWFKSRGFRECSIE 329 (366)
Q Consensus 314 a~~~Y~klGF~~~g~~ 329 (366)
+.++=+|+||+.....
T Consensus 233 S~~lA~kLGf~~~~~Y 248 (265)
T PF12746_consen 233 SIALAEKLGFHFDFEY 248 (265)
T ss_dssp HHHHHHHCT--EEEEE
T ss_pred HHHHHHHcCCccccee
Confidence 9999999999987653
No 136
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=97.90 E-value=8e-05 Score=71.05 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=63.9
Q ss_pred ccccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHH
Q 017776 3 ERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 71 (366)
Q Consensus 3 ~ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~ 71 (366)
+.++.+.|||++.. |.+++|++-.+ -+|..|+.+|.+|+|+.+.+.|||+|+ | ++.+.+++|+-+|+.+
T Consensus 169 ~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~e 248 (288)
T cd04245 169 KLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRE 248 (288)
T ss_pred HHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHH
Confidence 45667889999975 88999999999 999999999999999999999999965 3 4578999999999999
Q ss_pred HHHH
Q 017776 72 LIRQ 75 (366)
Q Consensus 72 l~~~ 75 (366)
+...
T Consensus 249 la~~ 252 (288)
T cd04245 249 LSYA 252 (288)
T ss_pred HHHC
Confidence 8643
No 137
>PRK05925 aspartate kinase; Provisional
Probab=97.90 E-value=6.9e-05 Score=75.63 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=60.5
Q ss_pred cccCCceEEEcCc-ccCCCCCeee---cCHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHH
Q 017776 4 RLDGGCLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 4 ll~~g~ipvi~~~-g~~~~g~~~n---in~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l 72 (366)
.++.+.|||++.. |.+++|++-. .++|..|+.+|.+|+|+.++++||++|+ | ++.++|++++-+|+.++
T Consensus 161 ~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~el 240 (440)
T PRK05925 161 ALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNL 240 (440)
T ss_pred hccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHH
Confidence 3467789999986 8899998876 6899999999999999999999999965 2 35789999999888887
Q ss_pred HH
Q 017776 73 IR 74 (366)
Q Consensus 73 ~~ 74 (366)
..
T Consensus 241 a~ 242 (440)
T PRK05925 241 AS 242 (440)
T ss_pred Hh
Confidence 53
No 138
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.85 E-value=0.00019 Score=75.89 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=60.0
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEE---EeHHHHHHHHhCCCeEeccccccHHHHhhhcCCCCc
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL---LTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNS 345 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l---~t~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s 345 (366)
..+.|-+|+|+|++|++|||++|++.+.++++ .++..+-+ .+..-.+|+.|+||.++....--++.. ...+
T Consensus 530 ~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls~~rn~~S-----Geys 603 (758)
T COG1444 530 VGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLSPTRNASS-----GEYT 603 (758)
T ss_pred ceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEecCccCcCC-----Ccee
Confidence 34679999999999999999999999999997 45665532 236789999999999998653222211 2455
Q ss_pred eeEEeecCC
Q 017776 346 KYYMKKLLP 354 (366)
Q Consensus 346 ~vl~k~L~~ 354 (366)
.+++|-|++
T Consensus 604 ~i~lkpLs~ 612 (758)
T COG1444 604 AIVLKPLSD 612 (758)
T ss_pred EEEEecCCH
Confidence 777787754
No 139
>PRK09084 aspartate kinase III; Validated
Probab=97.84 E-value=9.9e-05 Score=74.82 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=61.9
Q ss_pred ccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHH
Q 017776 3 ERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 71 (366)
Q Consensus 3 ~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~ 71 (366)
.+++.+ |||++. +|.++.|++-.+ .+|..|+.+|.+|+|+.++++|||+|+ | ++.+++++|+-+|+.+
T Consensus 170 ~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~e 248 (448)
T PRK09084 170 PLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAE 248 (448)
T ss_pred HhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHH
Confidence 356778 999987 588999999877 999999999999999999999999965 2 4578999999999998
Q ss_pred HHHH
Q 017776 72 LIRQ 75 (366)
Q Consensus 72 l~~~ 75 (366)
+...
T Consensus 249 la~~ 252 (448)
T PRK09084 249 MATF 252 (448)
T ss_pred HHhC
Confidence 8643
No 140
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.83 E-value=8.2e-05 Score=59.32 Aligned_cols=64 Identities=30% Similarity=0.396 Sum_probs=55.6
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEE
Q 017776 245 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 309 (366)
Q Consensus 245 ~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l 309 (366)
..+|+...+|+.+|.+...+. +++...|.+-+|.+++||||+|++|+..+++.+++.|.+.+=+
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~~-~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYDR-GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred ceEEEEecCCcEEEEEEEecC-CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 468889999999999988854 4578999999999999999999999999999999998755533
No 141
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=97.79 E-value=0.0001 Score=80.63 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=57.1
Q ss_pred ceEEEcCc-ccCCCCCeee---cCHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHHH
Q 017776 9 CLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 9 ~ipvi~~~-g~~~~g~~~n---in~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~~ 75 (366)
.|||++.. |.++.|++.- ..+|..|+.+|.+|+|++|+++||++|+ | ++.+++++|+-+|+.++...
T Consensus 191 ~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~ 268 (861)
T PRK08961 191 QVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATT 268 (861)
T ss_pred eEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHC
Confidence 49999875 8888888765 6899999999999999999999999965 2 34689999999999988643
No 142
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.74 E-value=4.3e-05 Score=73.15 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=70.4
Q ss_pred CcEEEEEECCEEEEEEEEeee---cCC---CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHH
Q 017776 245 DSFYVVEREGQIIACAALFPF---FKE---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 318 (366)
Q Consensus 245 ~~~~v~~~dg~iVG~~~l~~~---~~~---~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y 318 (366)
..++|++.+.++++-+...++ +.+ .++.|..+++.|+|||+|+.++||.+.++..++.|+...+|.. -+.+||
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P-~s~~iY 117 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP-FSGGIY 117 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc-CchhhH
Confidence 468899999999988777653 222 4678999999999999999999999999999999998876655 779999
Q ss_pred HhCCCeEecc
Q 017776 319 KSRGFRECSI 328 (366)
Q Consensus 319 ~klGF~~~g~ 328 (366)
+|.||...+.
T Consensus 118 rKfGye~asn 127 (389)
T COG4552 118 RKFGYEYASN 127 (389)
T ss_pred hhccccccce
Confidence 9999998763
No 143
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.73 E-value=0.00017 Score=78.33 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=60.6
Q ss_pred ccCCceEEEcCc-ccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHH
Q 017776 5 LDGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 5 l~~g~ipvi~~~-g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~ 73 (366)
.+.+.|||++.. |.++.|++..+- +|..|+.+|.+|+|+.++++||++|+ | ++.+++++|+-+|+.++.
T Consensus 179 ~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~ 258 (819)
T PRK09436 179 IPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELS 258 (819)
T ss_pred hcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHH
Confidence 346889999985 888899999887 99999999999999999999999965 2 457899999999988885
Q ss_pred H
Q 017776 74 R 74 (366)
Q Consensus 74 ~ 74 (366)
.
T Consensus 259 ~ 259 (819)
T PRK09436 259 Y 259 (819)
T ss_pred h
Confidence 3
No 144
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=97.72 E-value=0.00029 Score=67.32 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=60.3
Q ss_pred cCCceEEEcCc-ccCCCCCeee---cCHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHH
Q 017776 6 DGGCLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 6 ~~g~ipvi~~~-g~~~~g~~~n---in~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~ 74 (366)
..+.|||++.. |.++.|++-. ..+|..|+.+|.+|+|+.++++||++|+ | ++.+.+++|+-+|+.++..
T Consensus 176 ~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~ 255 (292)
T cd04258 176 LAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT 255 (292)
T ss_pred hcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 45689999975 8888898885 6789999999999999999999999965 2 3578999999999999975
Q ss_pred Hh
Q 017776 75 QR 76 (366)
Q Consensus 75 ~~ 76 (366)
.|
T Consensus 256 ~G 257 (292)
T cd04258 256 FG 257 (292)
T ss_pred CC
Confidence 43
No 145
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=97.58 E-value=0.00066 Score=65.31 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=58.8
Q ss_pred CCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHHH
Q 017776 7 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 7 ~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~~ 75 (366)
.+.|||++.. |.++.|++-.+ -+|..|+.+|..|+|+.++++|||+|+ | ++.+.|++|+-+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 4679999974 87888888764 589999999999999999999999965 2 45789999999999998643
No 146
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00051 Score=69.37 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=65.1
Q ss_pred cccccCCceEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHH
Q 017776 2 RERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEAD 70 (366)
Q Consensus 2 ~~ll~~g~ipvi~~-~g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~ 70 (366)
..+++.|.|||++- +|.+++|++.-+ =+|.-|+.||.+|+||.+-+.|||+|+ | ++.++|+.|+-+|+.
T Consensus 168 ~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ 247 (447)
T COG0527 168 LRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEAL 247 (447)
T ss_pred HHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHH
Confidence 45788999999997 788899888764 589999999999999999999999976 3 468999999999999
Q ss_pred HHHHHh
Q 017776 71 SLIRQR 76 (366)
Q Consensus 71 ~l~~~~ 76 (366)
+|..-|
T Consensus 248 ELA~~G 253 (447)
T COG0527 248 ELAYLG 253 (447)
T ss_pred HHHHCC
Confidence 996543
No 147
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.51 E-value=0.0003 Score=54.81 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeE
Q 017776 250 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRE 325 (366)
Q Consensus 250 ~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~ 325 (366)
...+|++|-++... ..+++..-++.|+|||||+.+.++....+.+.++|+.. +..+ ..++++..++||..
T Consensus 4 lgpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 4 LGPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred cCCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHHHCCCee
Confidence 44578888888777 46788889999999999999999999999999999854 4555 58899999999998
Q ss_pred ec
Q 017776 326 CS 327 (366)
Q Consensus 326 ~g 327 (366)
..
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 54
No 148
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.40 E-value=0.0026 Score=56.68 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=79.9
Q ss_pred ccCHHHHHHHHHHHHHcC--cCccC----CHHHHHhccCcEEEEEECCEEEEEEEEeeecC-------------------
Q 017776 213 VTDLSGIKQIIQPLVESG--ALVRR----TDEELLKALDSFYVVEREGQIIACAALFPFFK------------------- 267 (366)
Q Consensus 213 ~~Di~~i~~L~~~~~~~~--~~~~~----~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~------------------- 267 (366)
.++++++.++.++.+.+. |..+. ..+++...-..+++..++|+++||+.+.|...
T Consensus 7 ~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~ 86 (182)
T PF00765_consen 7 RRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPR 86 (182)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---S
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCC
Confidence 445667777777766543 33221 12233222234666677899999999986321
Q ss_pred -CCeEEEEEEEEccCCcC------CcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEecc
Q 017776 268 -EKCGEVAAIGVSPECRG------QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 268 -~~~~~L~~l~V~p~~Rg------qGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~ 328 (366)
+..+|+.+|+|+|+.++ .-+...|+..+.++|.++|++.+...+ ....++|++.||.....
T Consensus 87 ~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 87 SPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRRL 155 (182)
T ss_dssp STTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEES
T ss_pred CCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEEC
Confidence 37899999999998542 246789999999999999999998777 67899999999997654
No 149
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.32 E-value=0.00037 Score=53.46 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=40.3
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCC
Q 017776 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 323 (366)
Q Consensus 276 l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF 323 (366)
++|+|+|||+|+|++|+..++++++..|+. ....+..+|.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 999999999999999999999999988776 44688999999999
No 150
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.31 E-value=0.00018 Score=61.11 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=77.5
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCcc-C-CHHHHHhcc------C--------cEEEEEECCEEEEEEEEeeecC-
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVR-R-TDEELLKAL------D--------SFYVVEREGQIIACAALFPFFK- 267 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~-~-~~e~l~~~~------~--------~~~v~~~dg~iVG~~~l~~~~~- 267 (366)
...||+.-++|..++..| ....|+.. + +++.+...+ . ++. -...+.+||++.-..++.
T Consensus 11 ~~~irp~i~e~~q~~~~L----ea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~-~~~~~tLIghIigs~~~~E 85 (190)
T KOG4144|consen 11 APRIRPGIPESCQRRHTL----EASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFL-TLCEGTLIGHIIGSLWDKE 85 (190)
T ss_pred cccCCCCChHHHHHHhcc----ccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhh-hhccccceehhhcccCcch
Confidence 456888888887777776 33333211 1 111111111 1 111 112578888775543221
Q ss_pred -------------CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHc-CCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 268 -------------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 268 -------------~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~-g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
.....|+.++|+|+||.||+|..|+...++....+ -..++.+.+ ..-..||+++||+.++..
T Consensus 86 ~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp~ 162 (190)
T KOG4144|consen 86 RLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGPC 162 (190)
T ss_pred hhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeeccc
Confidence 24588999999999999999999998877766444 234555666 578999999999999874
No 151
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.31 E-value=0.0027 Score=61.62 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=74.1
Q ss_pred cceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----------------C--cEEEEEE--CCEEEEEEEEee
Q 017776 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------D--SFYVVER--EGQIIACAALFP 264 (366)
Q Consensus 205 ~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----------------~--~~~v~~~--dg~iVG~~~l~~ 264 (366)
|+.|||++.+|+++|.+|-...-.--...|.+++.+.+.+ + .+||.++ .|+++|++++..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 4679999999999999997654332234555555444422 1 4677775 599999999952
Q ss_pred ec-----------------------------------CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH---HcCCCE
Q 017776 265 FF-----------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA---SLGLDM 306 (366)
Q Consensus 265 ~~-----------------------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~---~~g~~~ 306 (366)
.- -.+..+|+.++++|+||+.|.|+.|-+.-.=.+. ++=-++
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~ 160 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADR 160 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SE
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchh
Confidence 10 1267789999999999999999988655444443 333446
Q ss_pred EEEEe------HHHHHHHHhCCCeEeccc
Q 017776 307 LFLLT------TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 307 v~l~t------~~a~~~Y~klGF~~~g~~ 329 (366)
+..+- ...-.||+.+|-...+.+
T Consensus 161 viAElrG~~De~G~SPFWdalG~~FF~md 189 (342)
T PF04958_consen 161 VIAELRGVSDEDGRSPFWDALGRHFFDMD 189 (342)
T ss_dssp EEEE--B---TT---HHHHHTGGGTS---
T ss_pred eeeeccCCcCCCCCCchHHHhhccccCCC
Confidence 65554 356789998887666543
No 152
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.26 E-value=0.0044 Score=57.72 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=83.0
Q ss_pred ceEEeCc-ccCHHHHHHHHHHHHHc--CcCcc------CCHHHHHhccCcEEEEEE-CCEEEEEEEEeeec---------
Q 017776 206 EGTRTAK-VTDLSGIKQIIQPLVES--GALVR------RTDEELLKALDSFYVVER-EGQIIACAALFPFF--------- 266 (366)
Q Consensus 206 ~~iR~a~-~~Di~~i~~L~~~~~~~--~~~~~------~~~e~l~~~~~~~~v~~~-dg~iVG~~~l~~~~--------- 266 (366)
+.++.+. ..++.++.++..+.+.. +|..+ ...+.+.....++++.+. +|++|||+.+.+..
T Consensus 8 ~~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p 87 (241)
T TIGR03694 8 FEIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFP 87 (241)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEecccccccccccc
Confidence 4455554 34477888887776543 44311 112222221123444433 58999999997520
Q ss_pred --------------------CCCeEEEEEEEEccCCcCC--------c--------------------HHHHHHHHHHHH
Q 017776 267 --------------------KEKCGEVAAIGVSPECRGQ--------G--------------------QGDKLLDYIEKK 298 (366)
Q Consensus 267 --------------------~~~~~~L~~l~V~p~~Rgq--------G--------------------iG~~Ll~~l~~~ 298 (366)
.+..+|+.+++|+|+||++ | +...|+..+.++
T Consensus 88 ~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 167 (241)
T TIGR03694 88 FEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIAL 167 (241)
T ss_pred HHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHH
Confidence 1257899999999999974 2 557799999999
Q ss_pred HHHcCCCEEEEEe-HHHHHHHHhCCCeEec
Q 017776 299 AASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 299 a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g 327 (366)
+...|++.++..+ +.-.+++.++|+....
T Consensus 168 a~~~Gi~~~~~v~~~~l~r~l~r~G~~~~~ 197 (241)
T TIGR03694 168 SSANGITHWYAIMEPRLARLLSRFGIQFRQ 197 (241)
T ss_pred HHHCCCcEEEEEeCHHHHHHHHHhCCceEE
Confidence 9999999998888 5678899999987643
No 153
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0077 Score=51.07 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=81.6
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCc--CccCCHHH---HHh----ccC--cEEEEEEC---------CEEEEEEEEeee
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGA--LVRRTDEE---LLK----ALD--SFYVVERE---------GQIIACAALFPF 265 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~--~~~~~~e~---l~~----~~~--~~~v~~~d---------g~iVG~~~l~~~ 265 (366)
..+-|.++.+++...+++....-... ..+.+.+. ++. +-+ .|+|.+.+ ...||=+.++..
T Consensus 14 vILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt 93 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLT 93 (185)
T ss_pred EEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEe
Confidence 45778888888888888765332221 22322111 111 112 35565211 236776666543
Q ss_pred cCC---------CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH-HcCCCEEEEEe----HHHHHHHHhCCCeEecc
Q 017776 266 FKE---------KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 266 ~~~---------~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~-~~g~~~v~l~t----~~a~~~Y~klGF~~~g~ 328 (366)
.++ ..+++.-+...|..||+|+|+..+..++.++. ..++...++.. .++.++|+|++|..+-.
T Consensus 94 ~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ 170 (185)
T KOG4135|consen 94 TSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFY 170 (185)
T ss_pred cCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeee
Confidence 221 35788888899999999999999999999995 44666666666 58999999999998754
No 154
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.09 E-value=0.0017 Score=62.89 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=63.6
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----------------CcEEEEEE--CCEEEEEEEEeeec-
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPFF- 266 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~v~~~--dg~iVG~~~l~~~~- 266 (366)
+.|||++..|+++|.+|-...-.--...|.+++.+.+.+ ..+||.++ .|+++|++++...-
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 679999999999999996544322234555555555433 14677774 58999999985210
Q ss_pred ----------------------------------CCCeEEEEEEEEccCCcCCcHHHHHHHH
Q 017776 267 ----------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLDY 294 (366)
Q Consensus 267 ----------------------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll~~ 294 (366)
-.+..+|+.++++|+||+.|.|+.|-+.
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 0156789999999999999999887543
No 155
>PRK09034 aspartate kinase; Reviewed
Probab=97.08 E-value=0.0034 Score=63.85 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred cccCCceEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHH
Q 017776 4 RLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 4 ll~~g~ipvi~~~-g~~~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l 72 (366)
++..+.|||++.. |.++.|++..+ -+|..|+.+|.+|+|+.+.+-|||+|+ | ++.+.+++|+-+|+.+|
T Consensus 170 ~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~el 249 (454)
T PRK09034 170 LRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMREL 249 (454)
T ss_pred HHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHH
Confidence 3456679999974 88899998874 689999999999999999999999965 3 45789999999999999
Q ss_pred HHHh
Q 017776 73 IRQR 76 (366)
Q Consensus 73 ~~~~ 76 (366)
...|
T Consensus 250 a~~G 253 (454)
T PRK09034 250 SYAG 253 (454)
T ss_pred HhCC
Confidence 6443
No 156
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.01 E-value=0.017 Score=47.87 Aligned_cols=98 Identities=18% Similarity=0.083 Sum_probs=70.4
Q ss_pred cccCHHHHHHHHHHHHHcC---cCccCCHHHHH---hcc-----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEcc
Q 017776 212 KVTDLSGIKQIIQPLVESG---ALVRRTDEELL---KAL-----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 280 (366)
Q Consensus 212 ~~~Di~~i~~L~~~~~~~~---~~~~~~~e~l~---~~~-----~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p 280 (366)
.++|++.+.+++....... ...+.+.+.+. ... -.++++..+|++||+...... .+..+.....++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~--~~~~~~~~~g~~~ 104 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRH--GGTLYYWYGGYDP 104 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEE--CCEEEEEEEEECH
Confidence 4566777777776543333 22233333222 222 256778889999998877643 3577777889999
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 281 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 281 ~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
+|+..+.|..|+..+++++.+.|++.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 105 EYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred hhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999999999999999999999998887654
No 157
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.00 E-value=0.013 Score=53.19 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=77.9
Q ss_pred ccCHHHHHHHHHHHHHc--CcCccC----CHHHHHhccCcEEEEE-ECCEEEEEEEEeeec-------------------
Q 017776 213 VTDLSGIKQIIQPLVES--GALVRR----TDEELLKALDSFYVVE-REGQIIACAALFPFF------------------- 266 (366)
Q Consensus 213 ~~Di~~i~~L~~~~~~~--~~~~~~----~~e~l~~~~~~~~v~~-~dg~iVG~~~l~~~~------------------- 266 (366)
.+++.++.++-.+.+.. +|..+. ..+++...-.++++.. .+|+++||+.+.+..
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 34566777777666544 333221 1222222222344444 568999999986421
Q ss_pred -CCCeEEEEEEEEccCCcCC---c----HHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEec
Q 017776 267 -KEKCGEVAAIGVSPECRGQ---G----QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 267 -~~~~~~L~~l~V~p~~Rgq---G----iG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g 327 (366)
.+..+|+.+++|+|+++.. + +...|+..+.+++...|++.++..+ +.-.++|.++||....
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQR 164 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeEE
Confidence 1368899999999986422 2 5678999999999999999998777 4667899999988754
No 158
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.77 E-value=0.0042 Score=60.03 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----------------CcEEEEEE--CCEEEEEEEEeeec---
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPFF--- 266 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~v~~~--dg~iVG~~~l~~~~--- 266 (366)
|||++..|+++|.+|-...-.--...|.+++.+.+.+ ..+||.++ .|+++|++++...-
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999996544322234555555555433 14677775 58999999985210
Q ss_pred --------------------------------CCCeEEEEEEEEccCCcCCcHHHHHHH
Q 017776 267 --------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 293 (366)
Q Consensus 267 --------------------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll~ 293 (366)
-.+..+|+.++++|+||+.|.|+.|-+
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 015678999999999999999987754
No 159
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=96.75 E-value=0.0038 Score=54.74 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=52.5
Q ss_pred ccCCceEEEcCccc----CCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCccc---ccCCcccccCCHHHHH
Q 017776 5 LDGGCLVILSNLGY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL---DESGHLIRFLTLQEAD 70 (366)
Q Consensus 5 l~~g~ipvi~~~g~----~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd~~~~---~~~~~~i~~l~~~~~~ 70 (366)
...+.+||+=|-.. ++--...-|-+|.+|.-||+.+++.++|+.|||+|+ +++++++.+|+..+..
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~ 162 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLK 162 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhcc
Confidence 34566778887654 556677889999999999999999999999999965 3456788888776644
No 160
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.68 E-value=0.0045 Score=59.76 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=60.6
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc-----------------CcEEEEEE--CCEEEEEEEEeeec--
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALFPFF-- 266 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~-----------------~~~~v~~~--dg~iVG~~~l~~~~-- 266 (366)
|||++..|+++|.+|-...-.--...|.+++.+.+.+ ..+||.++ .|+++|++++...-
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 7999999999999996543222234454544444322 14677774 58999999985210
Q ss_pred ---------------------------------CCCeEEEEEEEEccCCcCCcHHHHHHHH
Q 017776 267 ---------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLDY 294 (366)
Q Consensus 267 ---------------------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll~~ 294 (366)
-.+..+|+.++++|+||+.|.|+.|-+.
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 0156789999999999999999887543
No 161
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.61 E-value=0.0056 Score=59.09 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----------------CcEEEEEE--CCEEEEEEEEeeec---
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPFF--- 266 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~v~~~--dg~iVG~~~l~~~~--- 266 (366)
|||++..|+++|.+|-...-.--...|.+++.+.+.+ ..+||.++ .|+++|++++...-
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999996543222133444444443322 14667774 58999999985210
Q ss_pred --------------------------------CCCeEEEEEEEEccCCcCCcHHHHHHHH
Q 017776 267 --------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLDY 294 (366)
Q Consensus 267 --------------------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll~~ 294 (366)
-.+..+|+.++++|+||+.|.|+.|-+.
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 0156789999999999999999887543
No 162
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=96.50 E-value=0.013 Score=47.95 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHhccCcEEEEEECCEEEEEEEEeeecC---CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe--H
Q 017776 238 EELLKALDSFYVVEREGQIIACAALFPFFK---EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--T 312 (366)
Q Consensus 238 e~l~~~~~~~~v~~~dg~iVG~~~l~~~~~---~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t--~ 312 (366)
..++.+....|.+..+|.+||++.+..... .....+..+++...|||+|+|++....+.+..+ |...|-... +
T Consensus 30 ~~w~~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~EN~ 107 (143)
T COG5628 30 TYWRDPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVRENT 107 (143)
T ss_pred hhhcCcccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEeccCC
Confidence 344445556667777899999998864221 234557788999999999999999999887764 444443222 6
Q ss_pred HHHHHHHhCCCe
Q 017776 313 RTADWFKSRGFR 324 (366)
Q Consensus 313 ~a~~~Y~klGF~ 324 (366)
+|..|+++.-+.
T Consensus 108 PA~~fwK~~~~t 119 (143)
T COG5628 108 PARAFWKRVAET 119 (143)
T ss_pred hhHHHHHhhhcc
Confidence 899999996554
No 163
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.50 E-value=0.026 Score=50.05 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=51.9
Q ss_pred CCEEEEEEEEeeec------CCCeEEEEEEEEccCCcCCcHHHHHHHHHH-HHHHHcCCCEEEEEeHHHHHHHHh-CCCe
Q 017776 253 EGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIE-KKAASLGLDMLFLLTTRTADWFKS-RGFR 324 (366)
Q Consensus 253 dg~iVG~~~l~~~~------~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~-~~a~~~g~~~v~l~t~~a~~~Y~k-lGF~ 324 (366)
..++|+.+.+..+. +....+++.++++|+|||+|+++ |+..+. +..+..+-..+-..+..+.++|.+ +||.
T Consensus 55 T~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~~~N~~~~~~~~~~~~w~k~~G~~ 133 (181)
T PF06852_consen 55 TDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSVDDNSVAQGNVKMSNFWHKMFGFD 133 (181)
T ss_pred CCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccCCCceeeecCHHHHHHHHHHhCCC
Confidence 35688888776543 23578999999999999999996 554444 444443333333333677888877 7998
Q ss_pred Eecc
Q 017776 325 ECSI 328 (366)
Q Consensus 325 ~~g~ 328 (366)
..+.
T Consensus 134 ~~~h 137 (181)
T PF06852_consen 134 DYGH 137 (181)
T ss_pred CCcc
Confidence 8776
No 164
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.02 Score=52.45 Aligned_cols=66 Identities=27% Similarity=0.245 Sum_probs=50.8
Q ss_pred ccccCCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEec-Cccc-------ccCCcccccCCHHHHHHHH
Q 017776 3 ERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 3 ~ll~~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd-~~~~-------~~~~~~i~~l~~~~~~~l~ 73 (366)
+.|+.|-|||++. | +|..| -..|++|+..|..++||-|+..|. |+|+ +++.+...+|+-.|+.+..
T Consensus 120 ~~l~~grVvIf~g-G---tg~P~-fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~ 193 (238)
T COG0528 120 RHLEKGRVVIFGG-G---TGNPG-FTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193 (238)
T ss_pred HHHHcCCEEEEeC-C---CCCCC-CchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhc
Confidence 4678888988875 2 22322 246999999999999999999995 9865 3568899999998876553
No 165
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=96.46 E-value=0.031 Score=53.56 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCceEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCcccc--------cCCcccccCCHHHHHHHHHH
Q 017776 7 GGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD--------ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 7 ~g~ipvi~~~g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~~--------~~~~~i~~l~~~~~~~l~~~ 75 (366)
.+.|||++..+.+..|++-.+. +|.-|+.||.+|+|+.+.+-|||++.. ++.+.|++|+-+|+.+|..-
T Consensus 189 ~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~lsY~EA~ELA~~ 268 (304)
T cd04248 189 RDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGRTNYDVADQLANL 268 (304)
T ss_pred CCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCccCHHHHHHHHHc
Confidence 5679999998877889988764 899999999999999999999997432 34578889999999999654
Q ss_pred h
Q 017776 76 R 76 (366)
Q Consensus 76 ~ 76 (366)
|
T Consensus 269 G 269 (304)
T cd04248 269 G 269 (304)
T ss_pred C
Confidence 3
No 166
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.26 E-value=0.073 Score=47.89 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=80.0
Q ss_pred cccCHHHHHHHHHHHHHcC--cCcc----CCHHHHHhccCcEEEE-EECCEEEEEEEEeeec------------------
Q 017776 212 KVTDLSGIKQIIQPLVESG--ALVR----RTDEELLKALDSFYVV-EREGQIIACAALFPFF------------------ 266 (366)
Q Consensus 212 ~~~Di~~i~~L~~~~~~~~--~~~~----~~~e~l~~~~~~~~v~-~~dg~iVG~~~l~~~~------------------ 266 (366)
.++-++++..+..+.+.+. |... ...+++.+.--.+.++ ..+|+++||+.+.+..
T Consensus 13 ~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~ 92 (209)
T COG3916 13 FPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPP 92 (209)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCC
Confidence 3444566777766655443 3222 2223332222345555 6789999999997522
Q ss_pred --CCCeEEEEEEEEcc--CCcCCc----HHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEecc
Q 017776 267 --KEKCGEVAAIGVSP--ECRGQG----QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 267 --~~~~~~L~~l~V~p--~~RgqG----iG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~ 328 (366)
+++.+|..+|+|++ .-+..| ++..|+.-+.+++...|++.|...| ....+.+++.||.....
T Consensus 93 P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~ri 163 (209)
T COG3916 93 PSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLTRI 163 (209)
T ss_pred CCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEEc
Confidence 12788999999997 333332 4788999999999999999998888 57789999999987643
No 167
>PRK09181 aspartate kinase; Validated
Probab=96.14 E-value=0.034 Score=56.86 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=58.7
Q ss_pred CCceEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCcccc--------cCCcccccCCHHHHHHHHHH
Q 017776 7 GGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD--------ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 7 ~g~ipvi~~~g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~~--------~~~~~i~~l~~~~~~~l~~~ 75 (366)
.+.|||++..+.++.|++-.+- +|.-|+.+|.+|+|+.+-+-|||++.. ++.+.|++|+-+|+.+|..-
T Consensus 195 ~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~ 274 (475)
T PRK09181 195 TKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIGRTNYDVADQLANL 274 (475)
T ss_pred CCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcCccCHHHHHHHHHc
Confidence 5789999988767788888754 899999999999999999999998442 35678889999999999654
Q ss_pred h
Q 017776 76 R 76 (366)
Q Consensus 76 ~ 76 (366)
|
T Consensus 275 G 275 (475)
T PRK09181 275 G 275 (475)
T ss_pred C
Confidence 4
No 168
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.12 E-value=0.013 Score=63.67 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=61.1
Q ss_pred CceEEEcCc-ccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHHHHh
Q 017776 8 GCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 8 g~ipvi~~~-g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~~~~ 76 (366)
+.|||++.. |.++.|++-.+- +|.-|+.+|++|+|+.+.+.|||+|+ | ++.+.|++|+-+|+.+|..-|
T Consensus 185 ~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~G 264 (810)
T PRK09466 185 GKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLA 264 (810)
T ss_pred CeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcC
Confidence 379999964 778899988765 89999999999999999999999965 3 457899999999999998766
Q ss_pred hh
Q 017776 77 VK 78 (366)
Q Consensus 77 ~~ 78 (366)
.+
T Consensus 265 ak 266 (810)
T PRK09466 265 AP 266 (810)
T ss_pred cc
Confidence 53
No 169
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.02 Score=59.72 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=64.0
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCC-------------CEE-----------------------------
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-------------DML----------------------------- 307 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~-------------~~v----------------------------- 307 (366)
-+.|-+++|+|+|+++|||++.++-+.++...+.. +++
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 45788999999999999999999999888754311 111
Q ss_pred ------EEEe-----HHHHHHHHhCCCeEeccccccHHHHhhhcCCCCceeEEeecCCCCCCCc
Q 017776 308 ------FLLT-----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTSGII 360 (366)
Q Consensus 308 ------~l~t-----~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L~~~~~~~~ 360 (366)
++.+ ..-.+|++|+||.++...+.+.... ..++-+|+|.|.++.++|-
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lT-----GEHtcimLk~L~~~e~~wl 752 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLT-----GEHTCIMLKTLEGDESGWL 752 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccc-----cceeEEEEecCCCcccchH
Confidence 0111 3568999999999998765553321 4688899999999999885
No 170
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=95.72 E-value=0.014 Score=58.22 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=45.5
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 279 ~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
...||.+|+|++||+.+++.|++.+...+.+.. -.+..+|+|+||+..|..
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCc
Confidence 578999999999999999999999888887766 589999999999987754
No 171
>PLN02551 aspartokinase
Probab=95.54 E-value=0.045 Score=56.57 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred cCCceEEEcCc-ccC-CCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHH
Q 017776 6 DGGCLVILSNL-GYS-SSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 6 ~~g~ipvi~~~-g~~-~~g~~~ni---n~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~ 73 (366)
+.+.|||++.. |.+ ++|++-.+ =+|.-|+.+|.+|+|+.+-+.|||+|+ | ++.+.+++|+-+|+.+|.
T Consensus 230 ~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA 309 (521)
T PLN02551 230 DDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELA 309 (521)
T ss_pred cCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHH
Confidence 45689999985 888 89998875 489999999999999999999999965 3 457899999999999997
Q ss_pred HHhh
Q 017776 74 RQRV 77 (366)
Q Consensus 74 ~~~~ 77 (366)
.-|.
T Consensus 310 ~~Ga 313 (521)
T PLN02551 310 YFGA 313 (521)
T ss_pred hCCC
Confidence 6554
No 172
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.28 E-value=0.042 Score=55.20 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=88.9
Q ss_pred ccceEEeCcccCHHHHHHHHHHHHHcCcCcc-CCHHHHHhc--cCcEEE--EE-----ECCEEEEEEEEeeecCCCeEEE
Q 017776 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVR-RTDEELLKA--LDSFYV--VE-----REGQIIACAALFPFFKEKCGEV 273 (366)
Q Consensus 204 ~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~-~~~e~l~~~--~~~~~v--~~-----~dg~iVG~~~l~~~~~~~~~~L 273 (366)
+.+++++....+++.|.+|.+...+...... .+++++... ...+.+ +. -|.-+||++.+.. .++.++|
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~I 489 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWFI 489 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEEh
Confidence 3478899999999999999876555444333 345555552 223322 22 2345788887773 3467888
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe------HHHHHHHHhCCCeEeccc
Q 017776 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 274 ~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t------~~a~~~Y~klGF~~~g~~ 329 (366)
+.+...=..-|+++=.+||..+++.|...|+..++..- .....||+++||+..+..
T Consensus 490 Dt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~en 551 (574)
T COG3882 490 DTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGEN 551 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccccc
Confidence 87776655669999999999999999999999887655 256899999999966644
No 173
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=95.02 E-value=0.025 Score=42.14 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=25.9
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
..-|..|+|+|.+|++||+++||+.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 345789999999999999999999877654
No 174
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.89 E-value=0.055 Score=50.72 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=58.8
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhcc----------------CcEEEEEE--CCEEEEEEEEee---
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP--- 264 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~v~~~--dg~iVG~~~l~~--- 264 (366)
+.+||++..|++++.+|-...-.--...|.+.+.+...+ ..++|.++ .|+++|++++..
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vG 81 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVG 81 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeec
Confidence 568999999999999996543222233454544444432 24677776 699999988852
Q ss_pred ----ecC----------------------------CCeEEEEEEEEccCCcCCcHHHHH
Q 017776 265 ----FFK----------------------------EKCGEVAAIGVSPECRGQGQGDKL 291 (366)
Q Consensus 265 ----~~~----------------------------~~~~~L~~l~V~p~~RgqGiG~~L 291 (366)
+++ .+..+|..++++|+||.-+.|+.|
T Consensus 82 l~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 82 LNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred cCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhh
Confidence 110 145678999999999977777655
No 175
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=94.40 E-value=0.13 Score=45.80 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=37.4
Q ss_pred EEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 255 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 255 ~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
.++|+-.=... ......|.||.|.|.||++|+|+.|++..-+.++..+
T Consensus 66 h~vGyFSKEk~-s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKE-SWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS--TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEec-ccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 47787776533 2356789999999999999999999999999987665
No 176
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.12 E-value=0.19 Score=40.17 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=40.3
Q ss_pred EEEEECCEEEEEEEEeeec-CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 248 YVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 248 ~v~~~dg~iVG~~~l~~~~-~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
+-+..++...||+.+.+.. +....+|+.|+|.|..||+|+++.|+..+.+..
T Consensus 11 ~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 11 HAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred eEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3344455667777776432 247899999999999999999999999888764
No 177
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=93.55 E-value=0.13 Score=49.94 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=70.5
Q ss_pred ccCHHHHHHHHHHHHHcCcCccCCHHHHHhccCcEEEEEECCEEEEEEEEeee--cCCCeEEEEEEEEccCCcC-CcHHH
Q 017776 213 VTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QGQGD 289 (366)
Q Consensus 213 ~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~~~~v~~~dg~iVG~~~l~~~--~~~~~~~L~~l~V~p~~Rg-qGiG~ 289 (366)
.-|++.+..++++.+............+...+...+|. |.-.|.+.+... .+++..|++.|+|.++.|| -|+++
T Consensus 344 ~Ldl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd 420 (495)
T COG5630 344 DLDLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISD 420 (495)
T ss_pred hcCcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHH
Confidence 34678899998887776654332222232333444554 344566666533 3458899999999999999 89999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeHHHHHHH--HhCCCeEe
Q 017776 290 KLLDYIEKKAASLGLDMLFLLTTRTADWF--KSRGFREC 326 (366)
Q Consensus 290 ~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y--~klGF~~~ 326 (366)
.++.-+-+.....=+.+-+.. +++.+|| +.-||-..
T Consensus 421 ~vfniM~e~fP~eL~WRSR~~-N~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 421 AVFNIMREEFPNELFWRSRHN-NQVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHHhCcHhhhhhhccc-Ccchheeeehhhehhhc
Confidence 999988877753334444333 3566666 33455544
No 178
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=93.02 E-value=0.38 Score=38.41 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.5
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 250 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 250 ~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
+..++..=||+.+.+...+..++|+.|+|.|..||+|+++.|+..+.+..
T Consensus 14 ~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 14 IYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 33344445666665322247899999999999999999999999888764
No 179
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=92.86 E-value=1.3 Score=42.82 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=76.3
Q ss_pred cCHHHHHHHHHHHHHcCcCccCCHHHHHhc---c---CcEEEEE-ECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCc
Q 017776 214 TDLSGIKQIIQPLVESGALVRRTDEELLKA---L---DSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 286 (366)
Q Consensus 214 ~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~---~---~~~~v~~-~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqG 286 (366)
+|+++..+++.......-....+.+.+..- + ..++++. .+|+++|.+.+.... +..+......+++++..+
T Consensus 158 ~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~--~~~~~~~~g~~~~~~~~~ 235 (330)
T TIGR03019 158 GDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFR--DEVLPYYAGGLREARDVA 235 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeC--CEEEEEeccChHHHHhhC
Confidence 457777777765443332223444443321 1 1355666 689998877666433 333332456789999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeH----HHHHHHHhCCCeEeccc
Q 017776 287 QGDKLLDYIEKKAASLGLDMLFLLTT----RTADWFKSRGFRECSIE 329 (366)
Q Consensus 287 iG~~Ll~~l~~~a~~~g~~~v~l~t~----~a~~~Y~klGF~~~g~~ 329 (366)
-...|+-.++++|.++|++....... ...+|-++.||+++...
T Consensus 236 ~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~ 282 (330)
T TIGR03019 236 ANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLH 282 (330)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccce
Confidence 99999999999999999998877652 44566677899988754
No 180
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=92.69 E-value=0.26 Score=46.58 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=42.3
Q ss_pred cEEEEEE----CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 246 SFYVVER----EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 246 ~~~v~~~----dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
.|+|+.+ +..+||+-.=.... .....|+||.|.|.||++|+|+-|++..-+..+..|
T Consensus 128 lFYVl~e~d~~g~h~vGYFSKEK~s-~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 128 LFYVMTEVDDHGSHIVGYFSKEKVS-AEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEEEecCCCcEEEEEeceeccc-cCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 3555532 24578877665332 234679999999999999999999999998887654
No 181
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=92.47 E-value=0.18 Score=48.69 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=42.0
Q ss_pred cCCcCCcHHHHHHHHHHHHHH-HcCCCEEEEEe-HHHHHHHHhCCCeEeccc
Q 017776 280 PECRGQGQGDKLLDYIEKKAA-SLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 280 p~~RgqGiG~~Ll~~l~~~a~-~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~ 329 (366)
..||.||+|..||+.+++.|+ ++|-..+-+.. ..+.++|+|+||+..|..
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChh
Confidence 358999999999999999996 56777776665 588999999999987754
No 182
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=1.4 Score=40.21 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=70.8
Q ss_pred EEeC-cccCHHHHHHHHHHHHHcCcCccCCHHHHHh---ccCcEEEEEEC-CEEEEEEEEee-ecCCC-eEEEEEEEEcc
Q 017776 208 TRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLK---ALDSFYVVERE-GQIIACAALFP-FFKEK-CGEVAAIGVSP 280 (366)
Q Consensus 208 iR~a-~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~---~~~~~~v~~~d-g~iVG~~~l~~-~~~~~-~~~L~~l~V~p 280 (366)
+|.+ .+.++++..++....+............+.. .....+.++.+ |++||...-+| ..... .-|=+.+.|.|
T Consensus 5 vrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e 84 (266)
T COG3375 5 VRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVRE 84 (266)
T ss_pred EEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccc
Confidence 4444 4677888888877665554433333333332 22345555554 59999887776 22222 34556789999
Q ss_pred CCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 281 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 281 ~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
++++.|+|-+|-..--+++.++|+..+...-
T Consensus 85 ~~k~sglg~aLK~~Qre~a~~~G~tli~WTf 115 (266)
T COG3375 85 EVKGSGLGVALKMKQRERALSMGYTLIAWTF 115 (266)
T ss_pred cccccchhhhhHHHHHHHHHhcCeeeEEEec
Confidence 9999999999999999999999998885544
No 183
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=91.63 E-value=2.8 Score=37.46 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=77.5
Q ss_pred EEeCcccCHHHHHHHHHHHHHcCcC-ccCCHHHHHhccC------cEEEEEEC-CEEEEEEEEeeecC-----C-----C
Q 017776 208 TRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------SFYVVERE-GQIIACAALFPFFK-----E-----K 269 (366)
Q Consensus 208 iR~a~~~Di~~i~~L~~~~~~~~~~-~~~~~e~l~~~~~------~~~v~~~d-g~iVG~~~l~~~~~-----~-----~ 269 (366)
+|+++++|++++.++++.....--. ...+.+++..++- ..+|.+++ |+|-.+++++..+. + .
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 9999999999999999987655333 4457778777663 35666655 59999998886432 1 3
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEec
Q 017776 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 270 ~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g 327 (366)
.+++. .++... =--+.||..++-.|++.|+....... -....|.+.+.|-+-.
T Consensus 111 aAY~f-Y~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~Gd 164 (190)
T PF02799_consen 111 AAYSF-YYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGD 164 (190)
T ss_dssp EEEEE-EEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEE
T ss_pred eeeee-eeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCC
Confidence 45553 333332 24567899999999999999887777 2344788999998754
No 184
>PTZ00064 histone acetyltransferase; Provisional
Probab=91.31 E-value=0.72 Score=46.73 Aligned_cols=57 Identities=23% Similarity=0.188 Sum_probs=42.3
Q ss_pred cEEEEE-E---CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 246 SFYVVE-R---EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 246 ~~~v~~-~---dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
.|||+. . +-.+||+..=.... .....|.||.|.|.||++|+|+.|++..-+..+..|
T Consensus 357 lFYVLtE~D~~G~HiVGYFSKEK~S-~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 357 LFYIVTEVDEEGCHIVGYFSKEKVS-LLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred EEEEEEEecCCCcEEEEEecccccC-cccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 355553 2 24678877655322 234579999999999999999999999998887654
No 185
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=91.25 E-value=3.7 Score=34.38 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=49.4
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEE
Q 017776 247 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL 310 (366)
Q Consensus 247 ~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~ 310 (366)
.+-...+|++||++.+...++ ...-+. .+-+|++..+++|+-.+-.-+++|++.|.+.+++-
T Consensus 41 ~~~~~~~~kLiav~v~D~l~~-glSaVY-~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLG 102 (128)
T PF04377_consen 41 HLEYRLDGKLIAVAVVDILPD-GLSAVY-TFYDPDYSKRSLGTYSILREIELARELGLPYYYLG 102 (128)
T ss_pred EEEEEeCCeEEEEEEeecccc-hhhhee-eeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeC
Confidence 445567899999988875443 344453 45599999999999999999999999999998873
No 186
>PLN03239 histone acetyltransferase; Provisional
Probab=91.15 E-value=0.46 Score=46.14 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred cEEEEEE----CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 246 SFYVVER----EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 246 ~~~v~~~----dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
.|+|+.+ +-.+||+-+=... ......|+||.|.|.||++|+|+-|++..-+..+..|
T Consensus 186 lFYVl~e~D~~g~h~vGYFSKEK~-s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 186 LFYVLCEVDERGFHPVGYYSKEKY-SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred EEEEEEEecCCceEEEEEeeeccc-CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 3556543 2357777655532 2234579999999999999999999999998887654
No 187
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=90.66 E-value=0.18 Score=50.25 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=46.8
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEE-----e----HHHHHHHHhCCCeEe
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-----T----TRTADWFKSRGFREC 326 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~-----t----~~a~~~Y~klGF~~~ 326 (366)
..+.|..+.|||+||+-|+|..-+..+.+|..++-+...+-. + .+-..||++.||+..
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 356799999999999999999999999999988766655433 2 123579999999965
No 188
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=90.08 E-value=8.2 Score=35.88 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=50.7
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 247 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 247 ~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
++-...+|++||++.+.... +...-+ ..+-+|++-.+++|+-.+-.-+++|++.|...+++.-
T Consensus 146 ~~ey~~~g~LiaVav~D~l~-d~lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY 208 (240)
T PRK01305 146 FIEFRGDGKLVAVAVTDVLD-DGLSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGY 208 (240)
T ss_pred EEEEEeCCeEEEEEEEeccC-CceeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeE
Confidence 44455789999999888554 344455 3577999999999999999999999999999988744
No 189
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=89.98 E-value=0.36 Score=47.61 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=38.8
Q ss_pred EEEEEECCEEEEEEEEeeec--CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHc
Q 017776 247 FYVVEREGQIIACAALFPFF--KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASL 302 (366)
Q Consensus 247 ~~v~~~dg~iVG~~~l~~~~--~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~ 302 (366)
|||..+.+. .||++++.-. ......+.||-|.|.||++|+|+-|++.--+..+..
T Consensus 236 FYVlte~d~-~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 236 FYVLTECDS-YGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred EEEEEecCC-cceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 566654332 3455555422 224567999999999999999999999888777543
No 190
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=89.75 E-value=1.7 Score=40.71 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEeccccccHHHHhhhcCCCCceeEEeecCCCCC
Q 017776 285 QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTS 357 (366)
Q Consensus 285 qGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s~vl~k~L~~~~~ 357 (366)
.+-...|+..+.+.|++.|+..|++.+ .....+|++.||...+.- | ..|+. ....+|.|-|.++|.
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i--~----~~f~g-~~~~~~~~~~~~~r~ 86 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKI--P----GYFNG-HDAYFMSKYLDEDRR 86 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEec--c----cccCC-CceEEEEEcCchHhC
Confidence 345789999999999999999999999 466799999999998753 2 23333 344555576665544
No 191
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=89.37 E-value=0.43 Score=48.01 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=42.1
Q ss_pred cEEEEEE----CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 246 SFYVVER----EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 246 ~~~v~~~----dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
.|||+.+ +-.+||+..=.... .....|.||.|.|.||++|+|+.|++..-+..+..|
T Consensus 279 lFYvl~e~d~~g~h~vGyFSKEk~s-~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 279 LFYVLCECDDRGCHMVGYFSKEKHS-EEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred EEEEEEEecCCCcEEEEEecccccC-cCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 3556542 34788887665332 234579999999999999999999998888876554
No 192
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=89.15 E-value=3.3 Score=40.34 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=81.2
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHc-CcCccCCHHHHHhccC------cEEEEEE-CCEEEEEEEEeeecCC---------
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFKE--------- 268 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~-~~~~~~~~e~l~~~~~------~~~v~~~-dg~iVG~~~l~~~~~~--------- 268 (366)
--+|++++.|++++.+|+...... ......+.+++..++- ..||++. +|+|-+|++++..+..
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~kt 340 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKT 340 (421)
T ss_pred CCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcce
Confidence 348999999999999999876443 4445567777777653 2355554 8999999999864431
Q ss_pred -CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCCCeEec
Q 017776 269 -KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 269 -~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klGF~~~g 327 (366)
..+|+. ..|..+ ---..|+..++-.++..|+....... -....|+++++|-+-.
T Consensus 341 l~aaYly-Y~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~Gd 396 (421)
T KOG2779|consen 341 LQAAYLY-YNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGD 396 (421)
T ss_pred eeeeeEE-EeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCC
Confidence 234442 334333 22567888888888888888766555 3567899999998754
No 193
>PRK14852 hypothetical protein; Provisional
Probab=88.55 E-value=3.1 Score=46.07 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=83.6
Q ss_pred eEEeC-cccCHHHHHHHHHH-HHHcCcCccCCHHHHHhcc-----CcEEEEEECCEEEEEEEEeeecC------------
Q 017776 207 GTRTA-KVTDLSGIKQIIQP-LVESGALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK------------ 267 (366)
Q Consensus 207 ~iR~a-~~~Di~~i~~L~~~-~~~~~~~~~~~~e~l~~~~-----~~~~v~~~dg~iVG~~~l~~~~~------------ 267 (366)
.+|.+ +.+|+..+..|... +...++..+-.-..+...+ ...|+....+.+++...+.+...
T Consensus 30 ~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~ 109 (989)
T PRK14852 30 AIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKP 109 (989)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHH
Confidence 46666 46778888888766 4556665443222222222 13466655466677666653211
Q ss_pred ---------CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHh-CCCeEecc
Q 017776 268 ---------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKS-RGFRECSI 328 (366)
Q Consensus 268 ---------~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~k-lGF~~~g~ 328 (366)
...+++..++++|+.|.+-+=-.+++.+.+++...++..+++.+ ++=..||++ +||++.+.
T Consensus 110 eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 110 EVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccc
Confidence 15789999999998888777678888888888888999999888 466899997 79999874
No 194
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=88.22 E-value=5.1 Score=35.56 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=68.6
Q ss_pred EECCEEEEEEEEeeecC---------------------------CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC
Q 017776 251 EREGQIIACAALFPFFK---------------------------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 251 ~~dg~iVG~~~l~~~~~---------------------------~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g 303 (366)
+.+|++++++++..-.+ ....||+.++.. +.|.++.|+..+.+.....|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 56889999998864211 145678887754 68999999999999999999
Q ss_pred CCEEEEEe-HHHHHHHHhCCCeEeccccccH-------HHHhhhcCCCCceeEEee
Q 017776 304 LDMLFLLT-TRTADWFKSRGFRECSIEMIPE-------ERRKRINLSRNSKYYMKK 351 (366)
Q Consensus 304 ~~~v~l~t-~~a~~~Y~klGF~~~g~~~lp~-------~~~~~y~~~r~s~vl~k~ 351 (366)
++.+.... .+-.+++.|+|..........+ ..|..|+...+ +|+.-.
T Consensus 117 ~~w~vfTaT~~lr~~~~rlgl~~~~La~Ad~~rl~~~~~~WGsYY~~~P-~V~a~~ 171 (179)
T PF12261_consen 117 FEWVVFTATRQLRNLFRRLGLPPTVLADADPSRLGDDRASWGSYYDHQP-QVMAGD 171 (179)
T ss_pred CCEEEEeCCHHHHHHHHHcCCCceeccccCHhHcCcChhhhhhhhcCCC-eEEEEE
Confidence 99875554 5789999999999886433322 24666664443 444433
No 195
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=87.07 E-value=9.1 Score=33.24 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=61.9
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcC-------cCccCCHHHHHhccC------cEE-EEE--ECCEEEEEEEEeeec---
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESG-------ALVRRTDEELLKALD------SFY-VVE--REGQIIACAALFPFF--- 266 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~-------~~~~~~~e~l~~~~~------~~~-v~~--~dg~iVG~~~l~~~~--- 266 (366)
..-..++.+|-..+.+++.-+.... +....+.+-+.-.+. .|. .+. ..+++|||+...+..
T Consensus 24 F~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv 103 (162)
T PF01233_consen 24 FEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRV 103 (162)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEE
Confidence 3455555555555555555443332 223344444433222 222 222 369999999887621
Q ss_pred -C--CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEE
Q 017776 267 -K--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 307 (366)
Q Consensus 267 -~--~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v 307 (366)
+ -...+|-.++|++..|.++++--|++.+-+.+...|+..-
T Consensus 104 ~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 104 RDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp TTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred eeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 1 2578899999999999999999999999999988887654
No 196
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=85.35 E-value=1.8 Score=34.31 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=33.8
Q ss_pred cEEEEEECCEEEEEEEEeeec----------------------CCCeEEEEEEEEccCCcCCcHHHHHH
Q 017776 246 SFYVVEREGQIIACAALFPFF----------------------KEKCGEVAAIGVSPECRGQGQGDKLL 292 (366)
Q Consensus 246 ~~~v~~~dg~iVG~~~l~~~~----------------------~~~~~~L~~l~V~p~~RgqGiG~~Ll 292 (366)
++++.+.+.++||++.+.... ....++++.++|+|+||++.....|+
T Consensus 32 h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 444444333599999886311 12678999999999999998777765
No 197
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=84.80 E-value=24 Score=30.11 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=64.8
Q ss_pred ceEEeCcccCHHHHHHHHHHHHH---cCc----------CccCC--HHHHHhccCcEEEEE-ECCEEEEEEEEeeecCC-
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVE---SGA----------LVRRT--DEELLKALDSFYVVE-REGQIIACAALFPFFKE- 268 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~---~~~----------~~~~~--~e~l~~~~~~~~v~~-~dg~iVG~~~l~~~~~~- 268 (366)
|.+|+..+.|++.+..+-..... ..+ ..+.+ --.++....+-|++. +++++.||+..-..+.+
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGd 80 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGD 80 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SS
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCC
Confidence 46899999999999888322110 000 01111 122333445666666 88999999977664433
Q ss_pred -CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeH-HHHHHHHhCCCeEec
Q 017776 269 -KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 269 -~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~-~a~~~Y~klGF~~~g 327 (366)
....+..+.+.|. +......-||+.+.+.+-..++-.+.+..+ ....--+.-||...+
T Consensus 81 rptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 81 RPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp SEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred CceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 4566666655554 446888889999999999999999988774 334445566777655
No 198
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=84.59 E-value=12 Score=35.46 Aligned_cols=105 Identities=13% Similarity=-0.008 Sum_probs=62.4
Q ss_pred ceEEeC---cccCHHHHHHHHHHHHHcCcC--ccCC---HHHHHhccCcEEEEEE-CCEEEEEEEEeeecCCCeEEEEEE
Q 017776 206 EGTRTA---KVTDLSGIKQIIQPLVESGAL--VRRT---DEELLKALDSFYVVER-EGQIIACAALFPFFKEKCGEVAAI 276 (366)
Q Consensus 206 ~~iR~a---~~~Di~~i~~L~~~~~~~~~~--~~~~---~e~l~~~~~~~~v~~~-dg~iVG~~~l~~~~~~~~~~L~~l 276 (366)
..+.+. ++++.+++.++...+...... .... ...+.......+++.. +|+++|++.+.+....+...++-.
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~ 212 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFE 212 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCccEEEEEE
Confidence 345555 678888888888777655410 0000 1111111235777777 999999999998764455666545
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 277 ~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
--+|+ --+|+-..|+..+.+.+++.|++.+.+..
T Consensus 213 k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 213 KADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp EE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred ecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 55565 45799999999999999988999987544
No 199
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=82.84 E-value=2.8 Score=34.53 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=33.5
Q ss_pred EEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe--HHHHHHHHh
Q 017776 272 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKS 320 (366)
Q Consensus 272 ~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t--~~a~~~Y~k 320 (366)
.|-.++|++..|++|+|++|.+++++.-.-. ...+-+.. ..-..|.+|
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~~-p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEENVS-PHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHcCCC-cccceecCCcHHHHHHHHH
Confidence 4557999999999999999999988764221 22222333 356677766
No 200
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.60 E-value=5.8 Score=41.01 Aligned_cols=127 Identities=12% Similarity=0.145 Sum_probs=84.2
Q ss_pred CccceEEeCcccCHHHHHHHHHHHH-HcCcCccCC-HHHHHhcc----------CcEEEEEE-CCEEEEEEEEee----e
Q 017776 203 DLYEGTRTAKVTDLSGIKQIIQPLV-ESGALVRRT-DEELLKAL----------DSFYVVER-EGQIIACAALFP----F 265 (366)
Q Consensus 203 d~~~~iR~a~~~Di~~i~~L~~~~~-~~~~~~~~~-~e~l~~~~----------~~~~v~~~-dg~iVG~~~l~~----~ 265 (366)
.++..|||.+..|-..+..+...+. ..+...++. ...+..+. +.++++++ +++++|++.... +
T Consensus 677 ~~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F 756 (891)
T KOG3698|consen 677 CMFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLF 756 (891)
T ss_pred ceeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchh
Confidence 3568899999999999999987765 333333322 22332221 24555554 566999887641 0
Q ss_pred c-----------------------CC--------------------------------CeEEEEEEEEccCCcCCcHHHH
Q 017776 266 F-----------------------KE--------------------------------KCGEVAAIGVSPECRGQGQGDK 290 (366)
Q Consensus 266 ~-----------------------~~--------------------------------~~~~L~~l~V~p~~RgqGiG~~ 290 (366)
. .+ +..-+-..++..+.-.-++.++
T Consensus 757 ~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~ 836 (891)
T KOG3698|consen 757 SRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKK 836 (891)
T ss_pred hhceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHH
Confidence 0 00 0000112334444556789999
Q ss_pred HHHHHHHHHHHcCCCEEEEEe----HHHHHHHHhCCCeEeccc
Q 017776 291 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 291 Ll~~l~~~a~~~g~~~v~l~t----~~a~~~Y~klGF~~~g~~ 329 (366)
++.-++-..+..|.+-.++.+ ..-++||.++||..++..
T Consensus 837 m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 837 MIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred HHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 999999999999999888888 367899999999987765
No 201
>PHA01733 hypothetical protein
Probab=76.06 E-value=13 Score=32.07 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=60.4
Q ss_pred EEeCcccCHHHHHH-HHHH----HHHcCcCccCCHH-HHHhccCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccC
Q 017776 208 TRTAKVTDLSGIKQ-IIQP----LVESGALVRRTDE-ELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 208 iR~a~~~Di~~i~~-L~~~----~~~~~~~~~~~~e-~l~~~~~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~ 281 (366)
|||+|.+|+..+.. +... .+.-+. .+.... -+...-...+....+|+++|.++..+...++.+....+..+.=
T Consensus 5 IrpaT~~d~~~l~~n~r~~Dr~E~ealg~-~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v 83 (153)
T PHA01733 5 NRPATQADATEVAQNLRQEDREEIEGLGH-SPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAI 83 (153)
T ss_pred cccccHHHHHHHHccCCHHHHHHHHHhCC-CcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecHHh
Confidence 78888888765554 2211 111111 221111 1111223435566689999999888632345555554554443
Q ss_pred CcCCcHHHHHHHHHHHHHHH-cCCCEEEEEe----HHHHHHHHhCCCeEec
Q 017776 282 CRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECS 327 (366)
Q Consensus 282 ~RgqGiG~~Ll~~l~~~a~~-~g~~~v~l~t----~~a~~~Y~klGF~~~g 327 (366)
.+ +-+..++.+..+..+ ..+..++=.+ ..+++|.+.+||+...
T Consensus 84 ~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~ 131 (153)
T PHA01733 84 EK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLR 131 (153)
T ss_pred Hh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeec
Confidence 33 333344444444432 2333332222 5889999999999764
No 202
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=75.84 E-value=6.9 Score=34.36 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=60.2
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-HHHHHHHHhCC---CeEe--c---cccccHHHHhhh
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRG---FREC--S---IEMIPEERRKRI 339 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t-~~a~~~Y~klG---F~~~--g---~~~lp~~~~~~y 339 (366)
-.++++.+.|.|+.+|.|++..+ +.+.-..+++|+..-|..+ +...+.+++++ ...+ + +..+|......-
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlp 162 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLP 162 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHhccchhhcccCceeeccCccccCCCC
Confidence 36899999999999999999976 6777778899999999988 45566666654 3211 0 122221111000
Q ss_pred -cCCCCceeEEeecCCCCCCCccCCC
Q 017776 340 -NLSRNSKYYMKKLLPDTSGIIVDRA 364 (366)
Q Consensus 340 -~~~r~s~vl~k~L~~~~~~~~~~~~ 364 (366)
..-....+++.-+..+.+.|-.|..
T Consensus 163 pTr~ed~lv~V~Pi~r~~seWP~Gt~ 188 (196)
T PF02474_consen 163 PTRIEDVLVVVLPIGRSMSEWPAGTL 188 (196)
T ss_pred CcccccceEEEEcCCCccccCCCCcc
Confidence 0002345666677677777766543
No 203
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=73.62 E-value=14 Score=38.44 Aligned_cols=66 Identities=23% Similarity=0.215 Sum_probs=56.7
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 245 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 245 ~~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
..+.+.+.+|+++|++.+.+.......-++-+--+|+.- +|+-..|+..+..+++++|++++.+.-
T Consensus 393 ~~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 393 FPVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred ceeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 356677788999999999986666778888888888886 799999999999999999999998755
No 204
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=72.30 E-value=1.8 Score=41.85 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCccccccCccceEEeCcccCHHHHHHHHHHHHHcCcCccCCHHHHHhccC--cEEEEEECC----EEEEEEEEeeecCC
Q 017776 195 GMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALD--SFYVVEREG----QIIACAALFPFFKE 268 (366)
Q Consensus 195 g~gTmi~~d~~~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~~e~l~~~~~--~~~v~~~dg----~iVG~~~l~~~~~~ 268 (366)
-.|..+.++.++.+..+.-.-..-+-+-+.- ...-|+. ...+.-+++ .|+|..+.| ++||+..=... +.
T Consensus 186 pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCL-lsKlFLd---~KtLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK~-S~ 260 (395)
T COG5027 186 PPGNEIYRDKYISFFEIDGRKQRLYCRNLCL-LSKLFLD---HKTLYYDVDPFLFYVLTERGDTGCHLVGYFSKEKE-SE 260 (395)
T ss_pred CCCceeeecCceEEEEEcCcchhhHHHHHHH-HHHHHhc---CceeEEeccceEEEEEEEcCCcceeeeeeechhhc-cc
Confidence 4566777777777777765443322221111 1111111 112222333 356665433 35666554422 33
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 300 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~ 300 (366)
....++|+-+.|.||++|+|+-|++..-...+
T Consensus 261 ~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 261 QDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred ccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 55789999999999999999999876544443
No 205
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=5.1 Score=36.75 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=53.5
Q ss_pred ceEEeCcccCHHHHHHHHHHH-----HHcCcCccCC-HHHHHhccCc--EEEEEEC----CEEEEEEEE-----eeecC-
Q 017776 206 EGTRTAKVTDLSGIKQIIQPL-----VESGALVRRT-DEELLKALDS--FYVVERE----GQIIACAAL-----FPFFK- 267 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~-----~~~~~~~~~~-~e~l~~~~~~--~~v~~~d----g~iVG~~~l-----~~~~~- 267 (366)
..+|+..+.-...+.++++.+ ...++..+.+ .+.+.+.... +++.++. +.+.|++-+ +.+++
T Consensus 21 h~lrp~~p~~~~~v~eiId~LgklSAkaq~l~~piTsadKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~ 100 (264)
T KOG4601|consen 21 HDLRPYGPKRYWAVAEIIDCLGKLSAKAQGLKRPITSADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNE 100 (264)
T ss_pred hhcccCCcchhHHHHHHHHHHHHhhHHHhccccccchHHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccH
Confidence 346666655556666666543 2334444443 3334323232 2222221 346665543 33322
Q ss_pred -----CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 268 -----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 268 -----~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
+....|-.|||+++.|++|.|++|++++++.-
T Consensus 101 ~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~kE 137 (264)
T KOG4601|consen 101 QNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKKE 137 (264)
T ss_pred hhhhccCCceEEEEEeehhhhhcCchHHHHHHHHHhc
Confidence 23445668999999999999999999988754
No 206
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=65.53 E-value=31 Score=27.96 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCeEEEEEEEEccCCcC-CcHHHHHHHHHHHH
Q 017776 268 EKCGEVAAIGVSPECRG-QGQGDKLLDYIEKK 298 (366)
Q Consensus 268 ~~~~~L~~l~V~p~~Rg-qGiG~~Ll~~l~~~ 298 (366)
...++|+.|+|.+..|| .|++..++..+.+.
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~ 68 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLDG 68 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHHc
Confidence 46789999999999997 89999999988874
No 207
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=62.50 E-value=11 Score=36.91 Aligned_cols=46 Identities=15% Similarity=0.409 Sum_probs=35.5
Q ss_pred EEEEEEEEeeec---CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH
Q 017776 255 QIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 300 (366)
Q Consensus 255 ~iVG~~~l~~~~---~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~ 300 (366)
.++|+..++.+. +.-...|.-+.+.|.||++|+|..|++.+.+...
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~ 247 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYL 247 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhc
Confidence 356776666532 2345678899999999999999999999996654
No 208
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=60.35 E-value=64 Score=31.01 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=62.2
Q ss_pred EEEEECCEEEEEEEEeeecC-----CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcC--------CCEEEEEe---
Q 017776 248 YVVEREGQIIACAALFPFFK-----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG--------LDMLFLLT--- 311 (366)
Q Consensus 248 ~v~~~dg~iVG~~~l~~~~~-----~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g--------~~~v~l~t--- 311 (366)
.++...+.||+.+.+.+..+ .-...|..+.|..-|..-|+=.-|+++++-+.|+.. -..+.+.+
T Consensus 172 ~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~Y 251 (304)
T PF11124_consen 172 HIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVY 251 (304)
T ss_pred eEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEee
Confidence 33334578999999987432 245678899999999999999999999977665521 22444444
Q ss_pred ---HHHHHHHHhCCCeEec-ccccc
Q 017776 312 ---TRTADWFKSRGFRECS-IEMIP 332 (366)
Q Consensus 312 ---~~a~~~Y~klGF~~~g-~~~lp 332 (366)
....+..++.||..+. ...++
T Consensus 252 SFD~~~~k~L~~~gF~~i~ss~~ln 276 (304)
T PF11124_consen 252 SFDKDMKKTLKKKGFKKISSSFKLN 276 (304)
T ss_pred eccHHHHHHHHHCCCeeeecceecC
Confidence 5788999999999988 44444
No 209
>PHA00432 internal virion protein A
Probab=58.31 E-value=24 Score=29.87 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=42.4
Q ss_pred cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccC--CcCCcHHHHHHHHHHHHHHHcCCCEE----EEEeHHHHHHHH
Q 017776 246 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE--CRGQGQGDKLLDYIEKKAASLGLDML----FLLTTRTADWFK 319 (366)
Q Consensus 246 ~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~--~RgqGiG~~Ll~~l~~~a~~~g~~~v----~l~t~~a~~~Y~ 319 (366)
.++....+|.++++.+-. ....+.+..=+|..- ...+..-+.++.++.+..++ +..+ ......+++|.+
T Consensus 38 ~~~~~~~~G~~~aI~Gn~---G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~~--yp~LwNyV~~~N~~hir~Lk 112 (137)
T PHA00432 38 ECVTLSLDGFVLAIGGNQ---GDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLDQ--YPSLWNYVWVGNKSHIRFLK 112 (137)
T ss_pred eEEEEecCCeEEEEecCC---CCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHHh--hhhhheeeecCCHHHHHHHH
Confidence 577777889998877311 112234433333321 11233444444444433333 3333 333368899999
Q ss_pred hCCCeEecc
Q 017776 320 SRGFRECSI 328 (366)
Q Consensus 320 klGF~~~g~ 328 (366)
.+||+....
T Consensus 113 ~lGf~f~~e 121 (137)
T PHA00432 113 SIGAVFHNE 121 (137)
T ss_pred HcCeeeecc
Confidence 999998654
No 210
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=55.06 E-value=72 Score=36.40 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=49.2
Q ss_pred EECCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 251 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 251 ~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
+.+|+++|++.+.+.. .+...++.+--+|+. -+|+-..|+..+++++++.|++.+.+.-
T Consensus 427 d~~G~i~af~s~~p~~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 427 DADGQVVALLSFVPWG-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred CCCCeEEEEEEEeeeC-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 3479999999999865 345777766667775 6899999999999999999999998765
No 211
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=54.86 E-value=63 Score=25.68 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=34.5
Q ss_pred CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 253 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 253 dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
++..-|++.+. ......++|+.|+|.+..++.|++..++..+.+..
T Consensus 17 de~y~~~AIvt-~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~ 62 (98)
T cd03173 17 DEPLEGVAIVT-YEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF 62 (98)
T ss_pred cCCccEEEEEe-cCCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC
Confidence 33334444444 22346899999999999999999999999888663
No 212
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=54.60 E-value=1.3e+02 Score=29.96 Aligned_cols=114 Identities=17% Similarity=-0.004 Sum_probs=70.5
Q ss_pred CcccCHHHHHHHHHHHHHcCcCccC-C---HHHHHhccC---cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEEccCCc
Q 017776 211 AKVTDLSGIKQIIQPLVESGALVRR-T---DEELLKALD---SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 211 a~~~Di~~i~~L~~~~~~~~~~~~~-~---~e~l~~~~~---~~~v~~~dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~R 283 (366)
+++++++.+..+|.......+..+. + ...+...+. .++++..+|++||++.+... ++..+-.......++.
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~--~~~LyGRYwG~~~~~~ 287 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRG--DDTLYGRYWGCDEEIP 287 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEe--CCEEEEeeeccccccc
Confidence 3556778888888887666654443 2 333333332 35677889999999988743 2444433344445554
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHhCCCeEeccc
Q 017776 284 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIE 329 (366)
Q Consensus 284 gqGiG~~Ll~~l~~~a~~~g~~~v~l~t~~a~~~Y~klGF~~~g~~ 329 (366)
+.= -....-..+++|-++|++++..-+.. ..=...||+++...
T Consensus 288 ~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqG--EHK~~RGf~P~~t~ 330 (370)
T PF04339_consen 288 FLH-FELCYYQGIEYAIEHGLRRFEPGAQG--EHKIARGFEPVPTY 330 (370)
T ss_pred Ccc-hHHHHHHHHHHHHHcCCCEEECCcch--hHHHHcCCccccce
Confidence 432 34455678889999999998766532 11124699987643
No 213
>PLN00083 photosystem II subunit R; Provisional
Probab=52.85 E-value=19 Score=27.94 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCceEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEec
Q 017776 7 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID 50 (366)
Q Consensus 7 ~g~ipvi~~~g~~~~g~~~nin~D~~A~~~A~al~a~kLi~ltd 50 (366)
.|+=||-+|-.++++|..|.-+--.-|..+|..|+--.|++++.
T Consensus 55 DgYSPIY~p~eWs~sGD~Y~GgL~~WA~tlaglLg~GAllVy~T 98 (101)
T PLN00083 55 DEYSPIYTPQEFKTDGDKYEGDLKLAAAAVAGVIGTGALAILLT 98 (101)
T ss_pred cccCCccChhhcCCCcchhhccHHHHHHHHHHHHccceeEEEec
Confidence 46889999999999999999887778888999888876665543
No 214
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=52.29 E-value=44 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCEEEEEe---HHHHHHHHhCCCeEecccccc
Q 017776 304 LDMLFLLT---TRTADWFKSRGFRECSIEMIP 332 (366)
Q Consensus 304 ~~~v~l~t---~~a~~~Y~klGF~~~g~~~lp 332 (366)
+..+-+.| .++.+||+++||+......++
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~ 35 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLELGLELEGRAEIE 35 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHHcCCEEccccccC
Confidence 45666666 689999999999987665444
No 215
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=51.52 E-value=70 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.174 Sum_probs=26.8
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
-..-|.+++|.+..|++|+++.|+..+....
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 3456899999999999999999999877655
No 216
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=50.89 E-value=66 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=44.0
Q ss_pred ECCEEEEEEEEeee----cC--CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCC
Q 017776 252 REGQIIACAALFPF----FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD 305 (366)
Q Consensus 252 ~dg~iVG~~~l~~~----~~--~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~ 305 (366)
...++|||+...|. .+ -.+.+|-.++||+.-|+++++--|++.+-+.+.-.|+.
T Consensus 143 ~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIf 202 (421)
T KOG2779|consen 143 SSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIF 202 (421)
T ss_pred cCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhh
Confidence 45699999988762 11 25789999999999999999999999999988655544
No 217
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=49.71 E-value=14 Score=36.73 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=53.3
Q ss_pred cCCceEEEcC-cc-cCCCCCee---ecCHHHHHHHHHHHcCCCEEEEEecCccc---c----cCCcccccCCHHHHHHHH
Q 017776 6 DGGCLVILSN-LG-YSSSGEVL---NCNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 6 ~~g~ipvi~~-~g-~~~~g~~~---nin~D~~A~~~A~al~a~kLi~ltd~~~~---~----~~~~~i~~l~~~~~~~l~ 73 (366)
..+.+||+.. +| .-++|-+- ..-.|..|+.||++|++|.|=.--||+|+ | +..++++.++.+|+.+|.
T Consensus 257 ken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELa 336 (559)
T KOG0456|consen 257 KENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELA 336 (559)
T ss_pred cCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHH
Confidence 4577898885 45 23443322 24579999999999999999888898854 3 457899999999999986
Q ss_pred HHh
Q 017776 74 RQR 76 (366)
Q Consensus 74 ~~~ 76 (366)
=-|
T Consensus 337 YfG 339 (559)
T KOG0456|consen 337 YFG 339 (559)
T ss_pred hhh
Confidence 433
No 218
>PHA02769 hypothetical protein; Provisional
Probab=49.51 E-value=13 Score=30.30 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH---HHcCCCEEEEEe--HHHHHHHHhCCCeEeccc
Q 017776 288 GDKLLDYIEKKA---ASLGLDMLFLLT--TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 288 G~~Ll~~l~~~a---~~~g~~~v~l~t--~~a~~~Y~klGF~~~g~~ 329 (366)
|.-|+.++...+ +..|.+.++..- ..+..+|.|.||+.+|..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccc
Confidence 566666655555 455666655444 588999999999999865
No 219
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=45.45 E-value=94 Score=30.08 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCc-CccCCHHHHHhccC------------cEEEEEECCEEEEEEEEeeecC-----
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD------------SFYVVEREGQIIACAALFPFFK----- 267 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~-~~~~~~e~l~~~~~------------~~~v~~~dg~iVG~~~l~~~~~----- 267 (366)
.-+|++..+|++++.+|+.+....-. ......+++..... .+.|-+-+|+|-+|.+++..+.
T Consensus 259 ~GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n 338 (451)
T COG5092 259 EGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIEN 338 (451)
T ss_pred cccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecC
Confidence 45899999999999999987644322 23334445444331 1234455799999888875431
Q ss_pred -----CCeEEEEEEEEccCCcCCc------H---HHHHHHHHHHHHHHcCCCEEEEEeH-HHHHHHHhCCCeEec
Q 017776 268 -----EKCGEVAAIGVSPECRGQG------Q---GDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 268 -----~~~~~L~~l~V~p~~RgqG------i---G~~Ll~~l~~~a~~~g~~~v~l~t~-~a~~~Y~klGF~~~g 327 (366)
-..++|...+-+..+..-- + -..|+..++-.++..|+......+. ...-|...++|-+-.
T Consensus 339 ~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~Gd 413 (451)
T COG5092 339 KKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGD 413 (451)
T ss_pred ccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCCC
Confidence 1456777666665443311 1 2234444555566667766555552 234566778887653
No 220
>PRK00756 acyltransferase NodA; Provisional
Probab=45.27 E-value=57 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=42.0
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEeH-HHHHHHH---hCCCeEe
Q 017776 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFK---SRGFREC 326 (366)
Q Consensus 269 ~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t~-~a~~~Y~---klGF~~~ 326 (366)
-.++++.+.|.|+..|.||+..+ +.+.--.+++++..-+-.+. ...+-.+ +.|...+
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~r~g~~ti 144 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRNHVERLCRNGLATI 144 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHHHHHHHhccCccee
Confidence 46899999999999999999877 56777778889999888773 2223223 5565543
No 221
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=42.22 E-value=1.8e+02 Score=27.40 Aligned_cols=100 Identities=20% Similarity=0.148 Sum_probs=66.4
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccCC-HHHH---HhccCc---EEEEEECCEEEEEEEEeeecCCCeEEEE--EE
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRT-DEEL---LKALDS---FYVVEREGQIIACAALFPFFKEKCGEVA--AI 276 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~~-~e~l---~~~~~~---~~v~~~dg~iVG~~~l~~~~~~~~~~L~--~l 276 (366)
-.++++..=.-+++.++|..++...|...-+ .+.+ ...+.+ -.|+.-+|+|+++=.+.....+.-.+++ .-
T Consensus 127 G~v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNg 206 (264)
T PF07395_consen 127 GSVRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYING 206 (264)
T ss_pred CEEEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCeEEEecccC
Confidence 3578887778888999999888887764432 2333 333332 3567789999999888765444434333 45
Q ss_pred EEccCCcCCcHHHHHH----HHHHHHHHHcCCC
Q 017776 277 GVSPECRGQGQGDKLL----DYIEKKAASLGLD 305 (366)
Q Consensus 277 ~V~p~~RgqGiG~~Ll----~~l~~~a~~~g~~ 305 (366)
.+||+++.--.|+-|| +.+.++|+++|-.
T Consensus 207 G~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 207 GYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred ccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 7899999998888874 4455555555443
No 222
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=39.40 E-value=36 Score=26.88 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=16.9
Q ss_pred EEEEEe---HHHHHHHHhCCCeEec
Q 017776 306 MLFLLT---TRTADWFKSRGFRECS 327 (366)
Q Consensus 306 ~v~l~t---~~a~~~Y~klGF~~~g 327 (366)
.+.+.| .+|.+||+++||+...
T Consensus 3 ~i~l~V~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEeccHHHHHHHHHHhCceecC
Confidence 345555 6999999999998753
No 223
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=37.18 E-value=48 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHHcCCC-EEEEEecCcc
Q 017776 27 CNTYEVATACALAIEAD-KLICIIDGPI 53 (366)
Q Consensus 27 in~D~~A~~~A~al~a~-kLi~ltd~~~ 53 (366)
.++|++...|+.||..+ .++=|||..|
T Consensus 20 ~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 20 QSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 57899999999999999 9999999753
No 224
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=36.57 E-value=98 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 017776 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 268 ~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a 299 (366)
+..++|+.|.|..+-++.|++..+...+.+..
T Consensus 31 ~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~ 62 (98)
T cd04263 31 GEVATLATFTITKSGWLNNVADNIFTAIKKDH 62 (98)
T ss_pred CCCEEEEEEEEccccccccHHHHHHHHHHhhC
Confidence 57899999999999999999999999887663
No 225
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.31 E-value=91 Score=28.90 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEe-------HHHHHHHHhCCCeEeccccc
Q 017776 289 DKLLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIEMI 331 (366)
Q Consensus 289 ~~Ll~~l~~~a~~~g~~~v~l~t-------~~a~~~Y~klGF~~~g~~~l 331 (366)
..-...+.+-++..|.++|-+.+ .....||++.||+++....+
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~ 154 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCL 154 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeecc
Confidence 33455666677888999999998 36789999999999875433
No 226
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=4.1e+02 Score=24.90 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCEEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Q 017776 253 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 253 dg~iVG~~~l~~~~~~~~~~L~~l~V~p~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t 311 (366)
.|++|+++......+ +..-+. .+-+|++...++|+-.+-.=+.+|++.|...+++.-
T Consensus 159 ~G~LvAVavtDvL~d-GlSsVY-~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGY 215 (253)
T COG2935 159 EGKLVAVAVTDVLPD-GLSSVY-TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGY 215 (253)
T ss_pred CCcEEEEEeeecccC-cceeEE-EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 789999988876553 344443 466999999999999999999999999999998855
No 227
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.22 E-value=1.8e+02 Score=29.09 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=53.9
Q ss_pred cEEEEEEC-CEEEEEEEEeeecCCCeEEEEEEEEcc--CCcCCcHHHHHHHHHHHHHHHcCCCEEEEEe-----------
Q 017776 246 SFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSP--ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----------- 311 (366)
Q Consensus 246 ~~~v~~~d-g~iVG~~~l~~~~~~~~~~L~~l~V~p--~~RgqGiG~~Ll~~l~~~a~~~g~~~v~l~t----------- 311 (366)
.++.+.++ ++++|.+.+..........+..+-==| +|...-+-..++..+.++++++++-.+.+..
T Consensus 36 ~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g 115 (406)
T PF02388_consen 36 ERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDG 115 (406)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS
T ss_pred EEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhccccc
Confidence 34555555 677665545432211111121111124 6888888999999999999876655554433
Q ss_pred --------HHHHHHHHhCCCeEeccccccHHHHhhhcC-CCCceeEEeecCC
Q 017776 312 --------TRTADWFKSRGFRECSIEMIPEERRKRINL-SRNSKYYMKKLLP 354 (366)
Q Consensus 312 --------~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~-~r~s~vl~k~L~~ 354 (366)
......++++||...+... .|.. .-+...+++.|.+
T Consensus 116 ~~~~~~~~~~~~~~l~~~G~~~~g~~~-------~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 116 EPIEGEENDELIENLKALGFRHQGFTK-------GYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp -EEEE-S-THHHHHHHHTT-CCTS-SS-------STTSSSS-SEEEEEEGCC
T ss_pred ccccCcchHHHHHHHHhcCceecCccc-------CCCcccCccEEEEEECCC
Confidence 1346889999999987552 2222 2344667788866
No 228
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=29.99 E-value=2.9e+02 Score=26.56 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=58.7
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHcCcCccC---CHHHHHh---ccCc---EEEEEECCEEEEEEEEeeecCCCeEEEE--
Q 017776 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRR---TDEELLK---ALDS---FYVVEREGQIIACAALFPFFKEKCGEVA-- 274 (366)
Q Consensus 206 ~~iR~a~~~Di~~i~~L~~~~~~~~~~~~~---~~e~l~~---~~~~---~~v~~~dg~iVG~~~l~~~~~~~~~~L~-- 274 (366)
-.++++..=--+++..+|.+++...|-... ..+.+.+ .+.+ -.|+.-+|+|+|+=.+..-..+.-.+++
T Consensus 155 G~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~i 234 (298)
T PRK15312 155 GSVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNVYFDVP 234 (298)
T ss_pred CEEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcEEEecc
Confidence 347777777778899999998888776443 2444433 2322 3577789999999888754444333332
Q ss_pred EEEEccCCcCCcHHHHHH
Q 017776 275 AIGVSPECRGQGQGDKLL 292 (366)
Q Consensus 275 ~l~V~p~~RgqGiG~~Ll 292 (366)
.-.+||+++.--.|+-||
T Consensus 235 NgG~Dpe~~~~spGSIL~ 252 (298)
T PRK15312 235 NGAVKNECMPLSPGSILM 252 (298)
T ss_pred cCccCcccccCCCccEEE
Confidence 457899999888887764
No 229
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.97 E-value=4.1e+02 Score=23.62 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEe--------------------HHHHHHHHhCCCeEeccccccHHHHhhhcCCCCce
Q 017776 287 QGDKLLDYIEKKAASLGLDMLFLLT--------------------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSK 346 (366)
Q Consensus 287 iG~~Ll~~l~~~a~~~g~~~v~l~t--------------------~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~s~ 346 (366)
||...+..+++.+.++|.+.-.+.+ ..+.++.++.|...+..+---...++.+-+-....
T Consensus 70 Y~d~ai~~Li~~m~~~Ga~~~~l~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~ 149 (184)
T PRK13497 70 YGVHLMELLINGLLKQGARRDRLEAKIFGGAKTIATFSNVGEQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGR 149 (184)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHEEEEEEeCchhccccccHHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCe
Confidence 8999999999999998877433322 25688999999999876643333333333344567
Q ss_pred eEEeecCCC
Q 017776 347 YYMKKLLPD 355 (366)
Q Consensus 347 vl~k~L~~~ 355 (366)
+++|++...
T Consensus 150 v~~k~~~~~ 158 (184)
T PRK13497 150 ARQYPLTGA 158 (184)
T ss_pred EEEEEcCch
Confidence 788888543
No 230
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.64 E-value=65 Score=25.56 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=16.4
Q ss_pred EEEEe---HHHHHHHHhCCCeEec
Q 017776 307 LFLLT---TRTADWFKSRGFRECS 327 (366)
Q Consensus 307 v~l~t---~~a~~~Y~klGF~~~g 327 (366)
+.+.+ .++.+||+.+||+...
T Consensus 4 v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 4 INLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEeecCCHHHHHHHHHHCCCEEcc
Confidence 34445 6899999999999764
No 231
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=25.67 E-value=69 Score=25.03 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=18.9
Q ss_pred CCEEEEEe---HHHHHHHHhCCCeEecc
Q 017776 304 LDMLFLLT---TRTADWFKSRGFRECSI 328 (366)
Q Consensus 304 ~~~v~l~t---~~a~~~Y~klGF~~~g~ 328 (366)
+..+.+.| .++.+||+.+||+....
T Consensus 4 l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 4 IAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 34556666 58999999999988654
No 232
>PF04725 PsbR: Photosystem II 10 kDa polypeptide PsbR; InterPro: IPR006814 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight intrinsic protein PsbR found in PSII, which is also known as the 10 kDa polypeptide. The PsbR gene is found only in the nucleus of green algae and higher plants. PsbR may provide a binding site for the extrinsic oxygen-evolving complex protein PsbP to the thylakoid membrane. PsbR has a transmembrane domain to anchor it to the thylakoid membrane, and a charged N-terminal domain capable of forming ion bridges with extrinsic proteins, allowing PsbR to act as a docking protein. PsbR may be a pH-dependent stabilising protein that functions at both donor and acceptor sides of PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0042651 thylakoid membrane
Probab=24.13 E-value=1.2e+02 Score=23.85 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCceEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEe
Q 017776 7 GGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICII 49 (366)
Q Consensus 7 ~g~ipvi~~~g~~~~g~~~nin---~D~~A~~~A~al~a~kLi~lt 49 (366)
.|+=||-.|-.++++|..|... --.-|..+|..|+.-.|++.+
T Consensus 48 DgYSPIY~p~~Ws~~GD~Y~gGt~gL~~WA~~l~glL~~Gallvy~ 93 (99)
T PF04725_consen 48 DGYSPIYTPDEWSPSGDVYVGGTTGLLIWAVTLAGLLGGGALLVYN 93 (99)
T ss_pred cccCCCcChhhcCCCCCeecCChhhHHHHHHHHHHHHcccceeEEe
Confidence 4778999999999999999986 344566777777766665554
No 233
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.65 E-value=86 Score=24.39 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.5
Q ss_pred CCEEEEEe---HHHHHHHHhCCCeEecc
Q 017776 304 LDMLFLLT---TRTADWFKSRGFRECSI 328 (366)
Q Consensus 304 ~~~v~l~t---~~a~~~Y~klGF~~~g~ 328 (366)
+..+.+.+ ..+.+||+.+||+....
T Consensus 3 i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 45666666 58999999999998643
No 234
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.60 E-value=5.9e+02 Score=23.57 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEe----------------------HHHHHHHHhCCCeEeccccccHHHHhhhcCCCC
Q 017776 287 QGDKLLDYIEKKAASLGLDMLFLLT----------------------TRTADWFKSRGFRECSIEMIPEERRKRINLSRN 344 (366)
Q Consensus 287 iG~~Ll~~l~~~a~~~g~~~v~l~t----------------------~~a~~~Y~klGF~~~g~~~lp~~~~~~y~~~r~ 344 (366)
||...|..+++.+.+.|.+.-.+.+ ..+..+.++.|...+..+--....++.+-+-..
T Consensus 81 Ygd~Ame~Li~~m~~~Ga~r~~L~AKifGGA~m~~~~~~~~IG~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~T 160 (233)
T PRK13489 81 YGAYAMEVLINELIKAGGRRERFEAKVFGGAAVLAGMTTINIGDRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRT 160 (233)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHEEEEEEECccccCCCCcCChhHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCC
Confidence 8999999999999998877433322 246789999999998766433333334333455
Q ss_pred ceeEEeecCCCCCC
Q 017776 345 SKYYMKKLLPDTSG 358 (366)
Q Consensus 345 s~vl~k~L~~~~~~ 358 (366)
..+++|++....++
T Consensus 161 G~v~Vk~~~~~~~~ 174 (233)
T PRK13489 161 GRAMVKKLRLQVPG 174 (233)
T ss_pred CEEEEEEcCCCCCc
Confidence 68888888655543
No 235
>PLN00053 photosystem II subunit R; Provisional
Probab=23.39 E-value=1.2e+02 Score=24.42 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCceEEEcCcccCCCCCeeecCHH---HHHHHHHHHcCCCEEEEEe
Q 017776 7 GGCLVILSNLGYSSSGEVLNCNTY---EVATACALAIEADKLICII 49 (366)
Q Consensus 7 ~g~ipvi~~~g~~~~g~~~nin~D---~~A~~~A~al~a~kLi~lt 49 (366)
.|+=||-+|--++++|..|....- .-|..+|..|..-.|+..+
T Consensus 66 DgYSPIY~~~ews~~Gd~Y~ggttgL~~wa~~l~gll~~gallvyn 111 (117)
T PLN00053 66 DGYSPIYTPDEWSPSGDVYVGGTTGLLIWAVTLAGLLAGGALLVYN 111 (117)
T ss_pred cccCCCcChhhcCCCCCeeeCChhhHHHHHHHHHHHHcccceeEEe
Confidence 478899999999999999998844 3456677777766655544
No 236
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=23.36 E-value=1.8e+02 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCEEEEEe--------HHHHHHHHhCCCeEec
Q 017776 292 LDYIEKKAASLGLDMLFLLT--------TRTADWFKSRGFRECS 327 (366)
Q Consensus 292 l~~l~~~a~~~g~~~v~l~t--------~~a~~~Y~klGF~~~g 327 (366)
++.+.++|+..|++++=+.. ..-.++++..||++.+
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~s 86 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYS 86 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEE
Confidence 56788899999999997655 2346788899999886
No 237
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.34 E-value=1.5e+02 Score=27.05 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=25.6
Q ss_pred HHHHHcCCCEEEEEe-------HHHHHHHHhCCCeEecc
Q 017776 297 KKAASLGLDMLFLLT-------TRTADWFKSRGFRECSI 328 (366)
Q Consensus 297 ~~a~~~g~~~v~l~t-------~~a~~~Y~klGF~~~g~ 328 (366)
+-.+..+.+++.+.| .+-..|+++.||+.+..
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 344667899998888 26789999999999864
No 238
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=20.56 E-value=1.3e+02 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=18.5
Q ss_pred EEEEEe---HHHHHHHHh-CCCeEeccc
Q 017776 306 MLFLLT---TRTADWFKS-RGFRECSIE 329 (366)
Q Consensus 306 ~v~l~t---~~a~~~Y~k-lGF~~~g~~ 329 (366)
.+.+.+ .++.+||++ +||+.....
T Consensus 3 Hi~i~V~D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 3 HVEFYVGNAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEEeCCHHHHHHHHHHhcCCeEEEec
Confidence 455555 589999999 999987654
No 239
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.07 E-value=77 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCeEeccc
Q 017776 312 TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 312 ~~a~~~Y~klGF~~~g~~ 329 (366)
.++.+||+.+||+.....
T Consensus 13 ~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 13 AESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHhCCeeEecC
Confidence 689999999999987543
Done!