BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017777
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 595 bits (1535), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/364 (77%), Positives = 318/364 (87%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQI+P SDEEANL AMQL SASVLPM+LKSA+ELDLLEIIAKAGP A +SP
Sbjct: 1 MGSTG-ETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IASQLPT NPDA +LDR+LRLLA Y +L CS+R DGKV+RLYGLA V K+L KNE
Sbjct: 60 IEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S L LMNQDKVLMESWY+LKDAVL+GGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE Y GFEGL S+VDVGGG GA +N I+SKYP+IKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVS+PK DA+F+KWICHDWSDEHC+KFLKNCYEALP NGKVIVAE I
Sbjct: 240 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K V+H+D IMLAHNPGGKERT++EF LAK AGFQGF+V +AFNTYIM
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 270/368 (73%), Positives = 314/368 (85%), Gaps = 2/368 (0%)
Query: 1 MGST-SSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKA-GPDAFM 58
MGST ++E QI P SDEEANL AMQL SA+VLPM LK+AIELD+LEI+AK+ P ++
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 59 SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118
SP +IA+QLPT NP+A +LDR+LRLLASYSV+ +LR LP GKVERLYGLAPVCKFLTK
Sbjct: 61 SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 119 NEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFN 178
NEDGV+L+ L+ DKVL+E W+YLKDA+LEGGIPFNKAYGMN FDYHG D R NK+FN
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFN 180
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
GMSS+STITMKKILE Y GFEGL ++VDVGGG GA +MI++KYPSI INFDLPHVIQ
Sbjct: 181 KGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
DAPAF GVEH+GGDMF VPKGDAIFIKWICHDWSDEHC+K LKNCY ALP +GKVIVAE
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
ILP +PD S+A+KVVIH D +MLA+NPGGKERTE+EF+ALA A+GF+GF+V S AFNTY
Sbjct: 301 YILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY 360
Query: 359 IMEFLKSA 366
+MEFLK+A
Sbjct: 361 VMEFLKTA 368
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 283/365 (77%), Gaps = 6/365 (1%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST+++ A +DE+A + A+QL S+SVLPM LK+AIEL LLEI+ AG + ++P
Sbjct: 5 MGSTAADM----AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKS-LTP 59
Query: 61 KDIASQLPTK-NPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
++A++LP+ NP+A ++DRILRLLASY+V+ C + DG++ R YG APVCKFLT N
Sbjct: 60 TEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPN 119
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNN 179
EDGV+++ L LMNQDKVLMESWYYLKDAVL+GGIPFNKAYGM+AF+YHG D RFN++FN
Sbjct: 120 EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNE 179
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
GM +HS I KK+LE Y GFEGL ++VDVGGG+GAT+ I + YP+IKG+NFDLPHVI +
Sbjct: 180 GMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239
Query: 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299
AP FPGV HVGGDMF VP GD I +KWI HDWSD+HC LKNCY+ALP +GKV++ +
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299
Query: 300 ILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359
ILPV P+ + +S+ V HVD IMLAHNPGG+ER E+EF+ALA+ AGF G + N +
Sbjct: 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359
Query: 360 MEFLK 364
+EF K
Sbjct: 360 IEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 343 bits (881), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 247/367 (67%), Gaps = 7/367 (1%)
Query: 4 TSSETQISP-AQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGP-DAFMSPK 61
T + QIS ++ +++ A L AM LT+ V P VL +AI+L+L EIIAKA P AFMSP
Sbjct: 7 TKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPS 66
Query: 62 DIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
+IAS+LP T++ D LDR+LRLLASYSVL + R + DG ER+YGL+ V K+L +
Sbjct: 67 EIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 126
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP-FNKAYGMNAFDYHGKDLRFNKIFN 178
E L+ L++ W K+AV++ I F +G+ +++ GKD + N+IFN
Sbjct: 127 ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFN 186
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
M MK++LE Y GFEG++++VDVGGG G L +IISKYP IKGINFDLP VI+
Sbjct: 187 KSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE 246
Query: 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
+AP G+EHVGGDMF SVP+GDA+ +K +CH+WSDE C++FL NC++AL NGKVI+ E
Sbjct: 247 NAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
ILP P+TS SK+V +D +M GG+ERTE+++ L+K +GF FQV AFN+
Sbjct: 307 FILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
Query: 359 -IMEFLK 364
+MEF K
Sbjct: 366 GVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/367 (47%), Positives = 237/367 (64%), Gaps = 7/367 (1%)
Query: 4 TSSETQISP-AQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGP-DAFMSPK 61
T + QIS ++ +++ A L A LT+ V P VL +AI+L+L EIIAKA P AF SP
Sbjct: 7 TKEDNQISATSEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPS 66
Query: 62 DIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
+IAS+LP T++ D LDR LRLLASYSVL + R + DG ER+YGL+ V K+L +
Sbjct: 67 EIASKLPASTQHSDLPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPD 126
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP-FNKAYGMNAFDYHGKDLRFNKIFN 178
E L+ L++ W K+AV++ I F +G+ +++ GKD + N+IFN
Sbjct: 127 ESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFN 186
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
K+ LE Y GFEG++++VDVGGG G L +IISKYP IKGINFDLP VI+
Sbjct: 187 KSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE 246
Query: 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
+AP G+EHVGGD F SVP+GDA +K +CH+WSDE C++FL NC++AL NGKVI+ E
Sbjct: 247 NAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
ILP P+TS SK+V +D + GG+ERTE+++ L+K +GF FQV AFN+
Sbjct: 307 FILPEEPNTSEESKLVSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
Query: 359 -IMEFLK 364
+ EF K
Sbjct: 366 GVXEFYK 372
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 169/330 (51%), Gaps = 21/330 (6%)
Query: 30 ASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89
A V M LK +IE+++ II G +S Q+P+ D + R++R LA
Sbjct: 26 AFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN---VQRLMRYLAHNG 82
Query: 90 VLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQ-----DKVLMESWYYL 144
+ N E Y L + L K ++LCL D L S++ L
Sbjct: 83 FFEI-ITNQELENEEEAYALTVASELLVKG------TELCLAPMVECVLDPTLSTSFHNL 135
Query: 145 KDAVLEGGIP-FNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLN 203
K V E + F G + +++ K+ +N ++N+ ++S S + + + FEGL
Sbjct: 136 KKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLE 195
Query: 204 SVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAI 263
S+VDVGGG G T +I +P + + FD P V+++ + +VGGDMF+SVPK DA+
Sbjct: 196 SIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAV 255
Query: 264 FIKWICHDWSDEHCVKFLKNCYEALPVN---GKVIVAESILPVTPDTSLASKVVIHVDCI 320
+K + HDW+D+ C+K LK C EA+ + GKVIV + ++ D + +++ + ++
Sbjct: 256 LLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNVT 315
Query: 321 MLAHNPGGKERTEQEFRALAKAAGFQGFQV 350
+ N GKER E+E++ L AGFQ +++
Sbjct: 316 ISCVN--GKERNEEEWKKLFIEAGFQDYKI 343
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 168/341 (49%), Gaps = 26/341 (7%)
Query: 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVL 78
+A L + A + M LK A+E+++ II G +S Q+P+ +
Sbjct: 15 KAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN---V 71
Query: 79 DRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQ----- 133
R++R LA K E Y L + L + SDLCL
Sbjct: 72 RRLMRYLAHNGFFEII------TKEEESYALTVASELLVRG------SDLCLAPMVECVL 119
Query: 134 DKVLMESWYYLKDAVLEGGIP-FNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKI 192
D L S++ LK + E + F G +D+ K+ +N FN+ M+S S + +
Sbjct: 120 DPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL 179
Query: 193 LENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGD 252
+ F+GL S+VDVGGG G T +I +P +K I FD P V+++ + +VGGD
Sbjct: 180 RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGD 239
Query: 253 MFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVN---GKVIVAESILPVTPDTSL 309
MF S+P DA+ +K+I H+W+D+ C++ LK C EA+ + GKV + + ++ D +
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299
Query: 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350
+++ + +D M N GKER E+E++ L AGFQ +++
Sbjct: 300 VTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKI 338
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 155/323 (47%), Gaps = 26/323 (8%)
Query: 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96
LK A+E ++ II G +S Q+P+ L R L + ++
Sbjct: 33 LKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLXRYLAHNGFFEIIT---- 88
Query: 97 NLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQ-----DKVLMESWYYLKDAVLEG 151
K E Y L + L + SDLCL D L S++ LK + E
Sbjct: 89 -----KEEESYALTVASELLVRG------SDLCLAPXVECVLDPTLSGSYHELKKWIYEE 137
Query: 152 GIP-FNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGG 210
+ F G +D+ K+ +N FN+ +S S + + + F+GL S+VDVGG
Sbjct: 138 DLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGG 197
Query: 211 GIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICH 270
G G T +I +P +K I FD P V+++ + +VGGD F S+P DA+ +K+I H
Sbjct: 198 GTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILH 257
Query: 271 DWSDEHCVKFLKNCYEALPVN---GKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327
+W+D+ C++ LK C EA+ + GKV + + ++ D + +++ + D N
Sbjct: 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACLN-- 315
Query: 328 GKERTEQEFRALAKAAGFQGFQV 350
GKER E+E++ L AGFQ +++
Sbjct: 316 GKERNEEEWKKLFIEAGFQHYKI 338
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 15/338 (4%)
Query: 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91
V M LKSA+EL + + I G M+ ++AS L +P +L R LRLL
Sbjct: 21 VSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKL-HPSKVNILHRFLRLLTHNGFF 77
Query: 92 NCSLRNLPDGKVERL--YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVL 149
++ +G E Y L P K L + LS + ++ W K
Sbjct: 78 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFN 136
Query: 150 EGG--IPFNKAYGMNAFDYHGKDLRFNKI--FNNGMSSHSTITMKKILENYKGFEGLNSV 205
E F A G + +D+ KD + + F + M+S S + + EN + FEGL S+
Sbjct: 137 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 196
Query: 206 VDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFI 265
VDVGGG G +I +P +K FD P V+ + + VGGDMF S+P DA+ +
Sbjct: 197 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 256
Query: 266 KWICHDWSDEHCVKFLKNCYEALP---VNGKVIVAESILPVTPDTSLASKVVIHVDCIML 322
KW+ HDW+DE +K LKN EA+ +GKVI+ + + T D +++ + D +ML
Sbjct: 257 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML 316
Query: 323 AHNPGGKERTEQEFRALAKAAGFQGFQVVS-SAFNTYI 359
GKERT+QE+ L AGF +++ S F + I
Sbjct: 317 TMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 353
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 15/338 (4%)
Query: 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91
V M LKSA+EL + + I G M+ ++AS L +P +L R LRLL
Sbjct: 22 VSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKL-HPSKVNILHRFLRLLTHNGFF 78
Query: 92 NCSLRNLPDGKVERL--YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVL 149
++ +G E Y L P K L + LS + ++ W K
Sbjct: 79 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFN 137
Query: 150 EGG--IPFNKAYGMNAFDYHGKDLRFNKI--FNNGMSSHSTITMKKILENYKGFEGLNSV 205
E F A G + +D+ KD + + F + M+S S + + EN + FEGL S+
Sbjct: 138 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 197
Query: 206 VDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFI 265
VDVGGG G +I +P +K FD P V+ + + VGGDMF S+P DA+ +
Sbjct: 198 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 257
Query: 266 KWICHDWSDEHCVKFLKNCYEALP---VNGKVIVAESILPVTPDTSLASKVVIHVDCIML 322
KW+ HDW+DE +K LKN EA+ +GKVI+ + + T D +++ + D +ML
Sbjct: 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML 317
Query: 323 AHNPGGKERTEQEFRALAKAAGFQGFQVVS-SAFNTYI 359
GKERT+QE+ L AGF +++ S F + I
Sbjct: 318 TMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 354
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 15/338 (4%)
Query: 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91
V M LKSA+EL + + I G M+ ++AS L +P +L R LRLL
Sbjct: 18 VSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKL-HPSKVNILHRFLRLLTHNGFF 74
Query: 92 NCSLRNLPDGKVERL--YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVL 149
++ +G E Y L P K L + LS + ++ W K
Sbjct: 75 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFN 133
Query: 150 EGG--IPFNKAYGMNAFDYHGKDLRFNKI--FNNGMSSHSTITMKKILENYKGFEGLNSV 205
E F A G + +D+ KD + + F + M+S S + + EN + FEGL S+
Sbjct: 134 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 193
Query: 206 VDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFI 265
VDVGGG G +I +P +K FD P V+ + + VGGDMF S+P DA+ +
Sbjct: 194 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 253
Query: 266 KWICHDWSDEHCVKFLKNCYEALP---VNGKVIVAESILPVTPDTSLASKVVIHVDCIML 322
KW+ HDW+DE +K LKN EA+ +GKVI+ + + T D +++ + D +ML
Sbjct: 254 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML 313
Query: 323 AHNPGGKERTEQEFRALAKAAGFQGFQVVS-SAFNTYI 359
GKERT+QE+ L AGF +++ S F + I
Sbjct: 314 TMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 350
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 120/282 (42%), Gaps = 21/282 (7%)
Query: 78 LDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVL 137
L R+LRLLA V+ S DG+ + L L +++ V L D
Sbjct: 72 LRRVLRLLAVRDVVRES-----DGR----FALTDKGAAL-RSDSPVPARAGILXFTDTXF 121
Query: 138 MESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYK 197
+ + A+ F +G + Y D ++ G + S IL
Sbjct: 122 WTXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSA-AEHLILARAG 180
Query: 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ----DAPAFPGV-EHVGGD 252
F +V DVGGG G L ++ ++P ++G+ D V+ DAP G + V GD
Sbjct: 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240
Query: 253 MFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK 312
VP D +K I H+W DE V+ L NC P +G+V+V ++++P D + +
Sbjct: 241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQSKE 300
Query: 313 VVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA 354
D LA G+ERT E L AAG + +VV ++
Sbjct: 301 ----XDFXXLAART-GQERTAAELEPLFTAAGLRLDRVVGTS 337
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 15/215 (6%)
Query: 140 SWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGF 199
+W L +V G F+ A G + + +D + ++FN S S ++ Y F
Sbjct: 142 AWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-F 200
Query: 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGD 252
G + VD+GGG G+ ++ +P ++G + P V ++A E + GD
Sbjct: 201 SGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGD 260
Query: 253 MFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS 311
F ++P G D IK + HDW D+ V+ L+ A + +++V ++++ P S
Sbjct: 261 FFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLF 320
Query: 312 KVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346
+ +L GG ER+E EF AL + +G +
Sbjct: 321 VDL------LLLVLVGGAERSESEFAALLEKSGLR 349
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 141 WYYLKDAVLEGGIPFNKAYGMNA-------FDYHGKDLRFNKIFNNGMSSHSTITMKKIL 193
W +L DAV EG + + +G+ A + G+ L+F + S + + +L
Sbjct: 117 WGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWS----VNGRSVL 172
Query: 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP---AFPGVEHVG 250
+ + D+GGG GA +S YP K FD+P V+ A +F E +
Sbjct: 173 TAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231
Query: 251 ---GDMFVS-VPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD 306
GD F +P+ D + + HDW+D C L+ Y G ++V ES+L D
Sbjct: 232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL----D 287
Query: 307 TSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349
++ + + + G+ERT + L +AGF+ FQ
Sbjct: 288 EDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 121/291 (41%), Gaps = 31/291 (10%)
Query: 80 RILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLME 139
R++RLL ++ + R DG Y P L E + D+ L ++
Sbjct: 60 RLMRLLVAFEIFQGDTR---DG-----YANTPTSHLLRDVEG--SFRDMVLFYGEE-FHA 108
Query: 140 SWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKI--LENYK 197
+W +A+L G F A+G + + Y + + F M + S + +I L +++
Sbjct: 109 AWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKA-SNLAFHEIPRLLDFR 167
Query: 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP-------AFPGVEHVG 250
G S VDVGGG G I+ PS +G+ D + A A V VG
Sbjct: 168 G----RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVG 223
Query: 251 GDMFVSVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309
GDM VP GD + I D + ++ L NC EA+ +G+V+V E + + + +
Sbjct: 224 GDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPM 283
Query: 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
+ +H L G+ RT +E L GF ++V T ++
Sbjct: 284 SVLWDVH-----LFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMI 329
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 144/374 (38%), Gaps = 43/374 (11%)
Query: 5 SSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIA 64
SS + P + +D++ ++L L + V PM L+ A L L+ D ++ D
Sbjct: 2 SSSSPGEPLEPTDQDLDVLLKNLGNL-VTPMALRVAATLRLV--------DHLLAGADTL 52
Query: 65 SQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGL------APVCKFLTK 118
+ L + L R++R L VL + + RL L A +L
Sbjct: 53 AGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDL 112
Query: 119 NEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFN 178
N V+ +DL L D V G + YG ++ D+ F+
Sbjct: 113 N-GAVSHADLAFTG-----------LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFD 160
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP---- 234
MS + + + Y + + V+DVGGG G L I + P ++G +L
Sbjct: 161 ALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219
Query: 235 ---HVIQDAPAFPGVEHVGGDMFVSVP-KGDAIFIKWICHDWSDEHCVKFLKNCYEALPV 290
DA V GD F +P D + + ++ +WSDE + L+ C AL
Sbjct: 220 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP 279
Query: 291 NGKVIVAE--SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348
G+++V + + D ++ + + + M GG+ RT E LA +AG
Sbjct: 280 GGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM-----GGRVRTRDEVVDLAGSAGLALA 334
Query: 349 QVVSSAFNTYIMEF 362
+S T +F
Sbjct: 335 SERTSGSTTLPFDF 348
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 140 SWYYLKDAVLEGGIPFNKAYGMNAF-DYHGK-DLRFNKIFNNGMSSHSTITMKKILENYK 197
S+ L DA+ G + YG + D G+ DLR + F++ ++ + Y
Sbjct: 123 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRAS--FDSLLACDQDVAFDAPAAAYD 180
Query: 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVG 250
+ + V+DVGGG G I + P + ++ + A ++ V+ V
Sbjct: 181 -WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVE 239
Query: 251 GDMFVSVP-KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309
GD F +P K DAI + ++ +W D V+ L C EAL G++++ E D
Sbjct: 240 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER-----DDLHE 294
Query: 310 AS--KVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345
S + +D ML GG RT +++ LA +AG
Sbjct: 295 NSFNEQFTELDLRMLVFL-GGALRTREKWDGLAASAGL 331
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 40/293 (13%)
Query: 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96
+K+AIELDL +A+ PKD+A T D +V R+ LL + +
Sbjct: 48 MKAAIELDLFSHMAEG-------PKDLA----TLAADTGSVPPRLEMLLETLRQMRVI-- 94
Query: 97 NLPDGKVERL----YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGG 152
NL DGK Y +P K ++ V + + + D + S +G
Sbjct: 95 NLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKA-MAFLADDFYMGLSQAVRGQKNFKGQ 153
Query: 153 IPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGI 212
+P+ +L F +I S++ ++ +LE K +G+ ++DVGGGI
Sbjct: 154 VPYPPVT-------REDNLYFEEIHR----SNAKFAIQLLLEEAK-LDGVKKMIDVGGGI 201
Query: 213 GATLNMIISKYPSIKGINFDLP---HVIQDAPAFPGV----EHVGGDMFV-SVPKGDAIF 264
G ++ +P + +LP ++ + A GV + D++ S P+ DA+
Sbjct: 202 GDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVL 261
Query: 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL--PVTPDTSLASKVVI 315
I + +++ K ++A+ G++++ + ++ P P+ S ++
Sbjct: 262 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL 314
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 12/227 (5%)
Query: 144 LKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLN 203
L D V G + YG ++ D+ F+ S + + + Y + +
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALXSCDEDLAYEAPADAYD-WSAVR 184
Query: 204 SVVDVGGGIGATLNMIISKYPSIKGINFDLP-------HVIQDAPAFPGVEHVGGDMFVS 256
V+DVGGG G L I + P ++G +L DA V GD F
Sbjct: 185 HVLDVGGGNGGXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 257 VP-KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315
+P D + + ++ +WSDE + L+ C AL G+++V + V D A +
Sbjct: 245 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA-DVEGDG--ADRFFS 301
Query: 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEF 362
+ + GG+ RT E LA +AG +S T +F
Sbjct: 302 TLLDLRXLTFXGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDF 348
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 251 GDMFVSVPKGDAIFI-KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309
G F +P G ++ + HDW D V L+ C EA G V+V E+ V D
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA---VAGDEHA 282
Query: 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345
+ +D ML + GGKER+ E LA AG
Sbjct: 283 GTG----MDLRMLTYF-GGKERSLAELGELAAQAGL 313
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 189 MKKILENYKGFEGLNSVVDVGGGIGA-TLNMIISKYPSIKGINFDLPHVIQDAPAFPGVE 247
+++ L G + +D G GIG T +++ + + ++ ++Q A + G E
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-AKTYLGEE 125
Query: 248 H--------VGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
G F P D I+I+W+ +D+H +FL+ C +L NG +++ +
Sbjct: 126 GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185
Query: 299 SI 300
++
Sbjct: 186 NM 187
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKG 260
G + +D G GIG +++K + + + H +++A VG + S
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHXLEEAKRELAGXPVGKFILASXETA 152
Query: 261 -------DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299
D I I+W +D VKF K+C +AL NG + E+
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 214 ATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWS 273
A + + S+Y +I G F++ + G D D + + H +
Sbjct: 208 ARIQGVASRYHTIAGSAFEVDY--------------GNDY-------DLVLLPNFLHHFD 246
Query: 274 DEHCVKFLKNCYEALPVNGKVIVAESIL---PVTPDTSLASKVVIHVDCIMLAHNPGGKE 330
C + L+ AL V GKVIV + I +TP + A +V LA P G
Sbjct: 247 VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLV------XLATTPNGDA 300
Query: 331 RTEQEFRALAKAAGFQGFQVVS 352
T E+ + AGF Q+ S
Sbjct: 301 YTFAEYESXFSNAGFSHSQLHS 322
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP 234
F +V+D+ GG G L ++ ++P + G +DLP
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP 212
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 147 AVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILE 194
AV++ P K Y +N G+ +FN++F N +T KKI E
Sbjct: 305 AVIDQAFPRVKEYSLNGHTLPGQVQQFNQVFINNHRITPEVTYKKINE 352
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 117 TKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFD 165
T +G L+DL + DK+ E W LK V++GG K G ++F
Sbjct: 192 TAKVNGTPLTDL--IGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQ 238
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 205 VVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ----DAPAFPGVEHVGG------DMF 254
++D+GG G + ++ DLP ++ G E + G D
Sbjct: 183 LLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD 242
Query: 255 VSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
V P G DA+++ +S+E + L +++ + KV + E++
Sbjct: 243 VPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINF-DLPHVIQ 238
G S+ + +LEN + F G S+ D+ T N IIS S+ + + HVI
Sbjct: 186 GKLSYRSYWSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVIC 245
Query: 239 DAPAFPGVEHVGGDMFVSVP-KGDAIFIKW 267
P EH+ + P D++ +KW
Sbjct: 246 VTPKLVE-EHLKSAQYKKPPITVDSVCLKW 274
>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
Length = 295
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINF-DLPHVIQ 238
G S+ + +LEN + F G S+ D+ T N IIS S+ + + HVI
Sbjct: 203 GKLSYRSYWSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVIC 262
Query: 239 DAPAFPGVEHVGGDMFVSVP-KGDAIFIKW 267
P EH+ + P D++ +KW
Sbjct: 263 VTPKLVE-EHLKSAQYKKPPITVDSVCLKW 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,161,403
Number of Sequences: 62578
Number of extensions: 484357
Number of successful extensions: 1164
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 32
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)